BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012897
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/429 (85%), Positives = 399/429 (93%), Gaps = 2/429 (0%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
M+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQFEA
Sbjct: 79 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 138
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
L+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+HSNDE
Sbjct: 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 258
Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318
Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++GPLVN
Sbjct: 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
LLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
ENILKVGE +K + A DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW+
Sbjct: 439 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496
Query: 421 EEDDETIAA 429
+E+D+T+ A
Sbjct: 497 DEEDDTMGA 505
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/429 (85%), Positives = 399/429 (93%), Gaps = 2/429 (0%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
M+ GV+SDD++LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV+FL RED+PQLQFEA
Sbjct: 41 MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 100
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSENTKVVIDHGAVPIFVKLL S SDDVREQAVWALGNVAGDSP+CRDLV
Sbjct: 101 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 160
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE 180
L+ GAL+PLLAQLNE KLSMLRNATWTLSNFCRGKPQP F+Q RPALPALA+L+HSNDE
Sbjct: 161 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 220
Query: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240
EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIVTGDD
Sbjct: 221 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 280
Query: 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300
QTQCII + ALP LL LLT + KKSIKKEACWTISNITAGN+DQIQAVI+AG++GPLVN
Sbjct: 281 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 340
Query: 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360
LLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGL
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 400
Query: 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420
ENILKVGE +K + A DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW+
Sbjct: 401 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 458
Query: 421 EEDDETIAA 429
+E+D+T+ A
Sbjct: 459 DEEDDTMGA 467
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 178
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
DD QTQ I+ AL L L S K+SIKKEACWTISNITAGNR QIQ VIDA + L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
+++LQ AEF +KEAAWAI+NATSGG+ EQIKYLV GCIKPLCDL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
GLENIL++GE E K GT +N Y L+EEA GL+KIE LQSH+N EIY+KA ++E
Sbjct: 381 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 418 YWLEEDDET 426
Y+ ED+++
Sbjct: 438 YFGTEDEDS 446
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 481 bits (1238), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/429 (60%), Positives = 313/429 (72%), Gaps = 7/429 (1%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFE 59
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RFVEFL R++ LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
+AW LTNIASG S T++VI GAVPIF++LL+S +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-FDQVRPALPALAQLVHSN 178
VL L PLL +++ +L+M RNA W LSN CRGK PP F +V P L L+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
DD QTQ I+ AL L L S K+SIKKEACWTISNITAGNR QIQ VIDA + L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358
+++LQ AEF +KEAAWAI+NATSGG+ EQIKYLV GCIKPLCDL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 359 GLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417
GLENIL++GE E K GT +N Y L+EEA GL+KIE LQSH+N EIY+KA ++E
Sbjct: 384 GLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 418 YWLEEDDET 426
Y+ ED+++
Sbjct: 441 YFGTEDEDS 449
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 475 bits (1222), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/435 (59%), Positives = 316/435 (72%), Gaps = 12/435 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 150
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 211 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 330 NDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 449 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506
Query: 417 TYWLEED---DETIA 428
TY+ EE+ DET+A
Sbjct: 507 TYFGEEEDAVDETMA 521
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 158 QPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 216
Q + Q++ LP + Q ++S+D +E L+ LS I VI+AGV PRLVE
Sbjct: 79 QQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138
Query: 217 LGHPSPSVL-IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275
+ P +L + A + NI +G QT+ ++ A+P + LL ++ +K++A W +
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWAL 197
Query: 276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
N+ + D V+ + P++ L + + + + A W +SN G
Sbjct: 198 GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 264/460 (57%), Positives = 323/460 (70%), Gaps = 17/460 (3%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 362 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 417 TYWLEED---DETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453
TY+ EE+ DET+A + F + N Q FNF
Sbjct: 420 TYFGEEEDAVDETMAPQNAGNT-FGFGSNVNQ----QFNF 454
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/435 (59%), Positives = 315/435 (72%), Gaps = 12/435 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 5 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 64 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 362 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 419
Query: 417 TYWLEED---DETIA 428
TY+ EE+ DET+A
Sbjct: 420 TYFGEEEDAVDETMA 434
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/423 (59%), Positives = 308/423 (72%), Gaps = 9/423 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 62
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 122
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 123 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 242 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 300
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 301 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 360
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 361 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 417 TYW 419
TY+
Sbjct: 419 TYF 421
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/423 (59%), Positives = 308/423 (72%), Gaps = 9/423 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 62
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 63 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 122
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 123 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 242 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 300
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE+ KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 301 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 360
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENI+K+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 361 LDALENIIKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 418
Query: 417 TYW 419
TY+
Sbjct: 419 TYF 421
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 9/423 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 64
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 124
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 125 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 244 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 302
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 303 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 362
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 363 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 420
Query: 417 TYW 419
TY+
Sbjct: 421 TYF 423
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 9/423 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQ-LQFE 59
M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR VEF MRE+ P+ LQ E
Sbjct: 6 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 64
Query: 60 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119
AAWALTNIASGTS TKVV+D AVP+F++LL + S +V+EQA+WALGNVAGDS RD
Sbjct: 65 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 124
Query: 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG-KPQPPFDQVRPALPALAQLVHSN 178
VL A+ P+L N K S++R ATWTLSN CRG KPQP + V ALP LA+L++S
Sbjct: 125 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIVTG
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
+D QTQ +I G LP L LL S K++IKKEACWTISNITAGN +QIQAVIDA L+ PL
Sbjct: 244 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 302
Query: 299 VNLLQNAEFDIKKEAAWAISNATSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356
V LL+ AE KKEA WAISNA+SGG + I+YLV +GCIKPLCDL D RI+ V
Sbjct: 303 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 362
Query: 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416
L+ LENILK+GEA+K ++N+ A +E+A G+EKI N Q ++N++IYEKA KI+E
Sbjct: 363 LDALENILKMGEADKE--ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 420
Query: 417 TYW 419
TY+
Sbjct: 421 TYF 423
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 168 LPALAQLVHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL- 225
LP + Q ++S+D +E L+ LS I VI+AGV PRLVE + P +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
+ A + NI +G QT+ ++ A+P + LL ++ +K++A W + N+ + D
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323
V+ + P++ L + + + + A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 407 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 455
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 456 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 496
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 510
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 377 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 425
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 426 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 466
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/464 (49%), Positives = 306/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 420 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 460
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/449 (49%), Positives = 298/449 (66%), Gaps = 22/449 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 421 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 469
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPY 439
+ ++E Y+ +EE+++ + GF +
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSEGFAF 498
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 302/467 (64%), Gaps = 32/467 (6%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S + QL+AT RKLLS E+ PPI+ +I++G++P+FV FL R D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 121 LSQGALIPLLAQLNERAKLSM----LRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L S+ LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV++L A+F +KEA WA++N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ+H+N +Y+ +
Sbjct: 372 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQNHENESVYKAS 420
Query: 412 VKILETYWL--EEDDETIAAGDGPQPGFPYAGNEVQVPSGG---FNF 453
+ ++E Y+ EE+D+ + P G QV G FNF
Sbjct: 421 LSLIEKYFSVEEEEDQNVV------PETTSEGYTFQVQDGAPGTFNF 461
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/464 (48%), Positives = 304/464 (65%), Gaps = 26/464 (5%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AG RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +K AAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 440 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 488
Query: 412 VKILETYW-LEEDDETIAAGDGPQPGFPYAGNEVQVPS-GGFNF 453
+ ++E Y+ +EE+++ + GF + +VQ + G FNF
Sbjct: 489 LNLIEKYFSVEEEEDQNVVPETTSEGFAF---QVQDGAPGTFNF 529
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 405 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 453
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 454 LNLIEKYF 461
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 420 LNLIEKYF 427
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 397 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 445
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 446 LNLIEKYF 453
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 366 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 415 LNLIEKYF 422
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 366 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 415 LNLIEKYF 422
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 370 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 419 LNLIEKYF 426
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 417 bits (1071), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 370 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 419 LNLIEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/428 (51%), Positives = 288/428 (67%), Gaps = 21/428 (4%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
+V G+ S++ QL+AT RKLLS E+ PPI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
AWALTNIASGTSE TK V+D GA+P F+ LLASP + EQAVWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSQGALIPLLAQLN----ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV 175
+ GA+ PLLA L LRN TWTLSN CR K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235
H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LLG ++ PALR +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295
VTG D QTQ +I GAL LLT+ K +I+KEA WT+SNITAG +DQIQ V++ GLV
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355
LV +L A+F +KEAAWAI+N TSGGT EQI YLV G I+PL +L D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 CLEGLENIL----KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411
L+ + NI K+GE EK + ++EE GL+KIE LQ H+N +Y+ +
Sbjct: 371 ILDAISNIFQAAEKLGETEK-----------LSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 412 VKILETYW 419
+ ++E Y+
Sbjct: 420 LNLIEKYF 427
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 17/252 (6%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
QAVIDAG + LV LL + I +EA WA+SN SGG +EQI+ ++ G + L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 347 CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 406
P+ +I+ L L NI G N+ Q V+EA LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 407 IYEKAVKILETY 418
I ++A + LE
Sbjct: 238 IQKEAQEALEKL 249
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 8/234 (3%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL+SP++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 157
+A+WAL N+A V+ GAL P L QL +L+ A W LSN G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 217
Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 218 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 271
P+ +L AL + NI +G + Q Q + GAL L L +H ++K I+KEA
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK-IQKEA 242
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 8/227 (3%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ EA
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EA 74
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A V
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KPQPPFDQVRPALPALAQLVHS 177
+ GAL P L QL +L+ A W LSN G + Q D ALPAL QL+ S
Sbjct: 135 IDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSS 191
Query: 178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV 224
+E++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 129/233 (55%), Gaps = 9/233 (3%)
Query: 95 SDDVREQ--AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152
SDD++EQ A + D V+ GAL P L QL +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 153 CRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 209
G + Q D ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG
Sbjct: 82 ASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
P LV+LL P+ +L AL + NI +G + Q Q +I GALP L+ LL+ S + I +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 198
Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
EA W +SNI +G +Q QAV +AG + L L + I+KEA A+ S
Sbjct: 199 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 32 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91
I+ VI +G +P V+ L + LQ EA WAL+NIASG +E + V + GA+ +L
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231
Query: 92 ASPSDDVREQAVWAL 106
+ ++ ++++A AL
Sbjct: 232 SHENEKIQKEAQEAL 246
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 117/197 (59%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 227
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFV 346
AVIDAG + LV LL + I +EA WA+SN SGG + K V+E +P L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 347 CPDPRIVTVCLEGLENI 363
P+ +I E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
QAV +AG L L + I+KEA A+ S
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 107/202 (52%), Gaps = 11/202 (5%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P V+ L SP + A+ L +A V+ GAL P L QL +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 144 NATWTLSNFCRGKPQPPFDQVRP-----ALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198
A W LSN G +Q++ ALPAL QL+ S +E++L +A WALS ++ G N
Sbjct: 73 EALWALSNIASGG----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258
++IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + GA P L L
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 259 LTHSHKKSIKKEACWTISNITA 280
+ ++K I+KEA + I +
Sbjct: 189 QSSPNEK-IQKEAQEALEKIQS 209
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 5/184 (2%)
Query: 13 QLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 70
Q E + RKL I + I+ VI +G +P V+ L + LQ EA WAL+NIASG
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASG 84
Query: 71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 130
+E + VID GA+P V+LL+SP++ + ++A+WAL N+A V+ GAL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 131 AQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA 189
QL +L+ A W LSN G Q + A PAL QL S +E++ +A A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEA 203
Query: 190 LSYL 193
L +
Sbjct: 204 LEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 117/196 (59%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 227
LP + Q ++S D++ L A LS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC 347
AVIDAG + LV LL + I +EA WA+SN SGG +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 PDPRIVTVCLEGLENI 363
+ +I E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 15/209 (7%)
Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
P++V+ L P L ALR + I +G + Q Q +I GALP L+ LL+ S + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329
EA W +SNI +G +QIQAVIDAG + LV LL + I +EA WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 389
+ ++ G + L L P+ +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLQSHDNNEIYEKAVKILETY 418
A LEK+E LQSH+N +I ++A + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
QAV +AG + L L + I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 104/191 (54%), Gaps = 7/191 (3%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P V+ L SP + A+ L +A V+ GAL P L QL +L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQ 72
Query: 144 NATWTLSNFCRG---KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200
A W LSN G + Q D ALPAL QL+ S +E++L +A WALS ++ G N++
Sbjct: 73 EALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 260
IQAVI+AG P LV+LL P+ +L AL + NI +G + Q Q + GAL L L +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 261 HSHKKSIKKEA 271
H ++K I+KEA
Sbjct: 191 HENEK-IQKEA 200
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 13 QLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 70
Q E + RKL I + I+ VI +G +P V+ L + LQ EA WAL+NIASG
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASG 84
Query: 71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLL 130
+E + VID GA+P V+LL+SP++ + ++A+WAL N+A V+ GAL P L
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL-PAL 143
Query: 131 AQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA 189
QL +L+ A W LSN G Q + AL L QL +E++ +A A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 190 LSYL 193
L L
Sbjct: 204 LEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
LP + Q ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346
QAVIDAG + LV LL + I +EA WA+SN SGG +EQ + + G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 347 CPDPRIVTVCLEGLENI 363
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 15/209 (7%)
Query: 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269
P++ + L + A R I++ + Q Q +I GALP L+ LL+ S + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329
EA W +SNI +G +QIQAVIDAG + LV LL + I +EA WA+SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE 389
+ ++ G + L L P+ +I+ L L NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLQSHDNNEIYEKAVKILETY 418
A LEK+E LQSH+N +I ++A + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI 226
ALPAL QL+ S +E++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286
AL + NI +G + Q Q +I GALP L+ LL+ S + I +EA W +SNI +G +Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 287 QAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322
QAV +AG + L L + I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 111 bits (277), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 7/187 (3%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
+P+ + L +D Q Q A + I S +E + VID GA+P V+LL+SP++ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG---KP 157
+A+WAL N+A V+ GAL P L QL +L+ A W LSN G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 217
Q D ALPAL QL+ S +E++L +A WALS ++ G N++ QAV EAG +L +L
Sbjct: 132 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 218 GHPSPSV 224
H + +
Sbjct: 190 SHENEKI 196
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA 60
M + SDD QL AT +F ++LS + + I+ VI +G +P V+ L + LQ EA
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EA 74
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
WAL+NIASG +E + VID GA+P V+LL+SP++ + ++A+WAL N+A V
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR-GKPQPPFDQVRPALPALAQLVHSND 179
+ GAL P L QL +L+ A W LSN G Q + AL L QL +
Sbjct: 135 IDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 180 EEVLTDACWALSYL 193
E++ +A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
Query: 143 RNATWTLSNFCRGKPQPPFDQVRPA--LPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200
+ A L+ G P + A + L +L+ S D EV +A AL+ ++ G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT 260
I+A+++AG LV+LL V A R + NI +G D + I+ G + L+ LLT
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 261 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320
+ + ++KEA ++NI +G + I+A++DAG V LV LL + + +++KEAA A++N
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363
SG T IK +V G ++ L L D + LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 171 LAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 230
L +L+ S D E +A L+ ++ G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290
+ NI +G D + I+ G + L+ LLT + + ++KEA ++NI +G + I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 291 DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 350
DAG V LV LL + + +++KEAA A++N S G E IK +V G ++ L L D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 351 RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 410
+ L NI A+ + +V +A G+E ++ L + ++E+ ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 411 AVKILETY----WLE 421
A + LE WLE
Sbjct: 232 AQRALENIKSGGWLE 246
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 123/277 (44%), Gaps = 49/277 (17%)
Query: 7 SDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWAL 64
S DS Q EA R L I P I+ ++ +G V V+ L D ++Q EAA AL
Sbjct: 13 STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARAL 68
Query: 65 TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 124
NIASG E K ++D G V + VKLL S +V+++A AL N+A ++ G
Sbjct: 69 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG 128
Query: 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLT 184
+ L+ +L+ S D EV
Sbjct: 129 GVEVLV------------------------------------------KLLTSTDSEVQK 146
Query: 185 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244
+A AL+ ++ G ++ I+A+++AG LV+LL V A R + NI +G +
Sbjct: 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206
Query: 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281
I+ G + L LLT + + ++KEA + NI +G
Sbjct: 207 AIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSG 242
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 160
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 161 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 218
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 219 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 277
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 278 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 180
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 181 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 237
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 238 QRLVQNCLWTLRNLSDAATKQEGM 261
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 78 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 137 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 255 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTS 336
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236
+ND E L LS + + A+ ++G P LV +LG P SVL A+ T+ N++
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIK-KEACWTISNITAGNRDQIQAVIDAGLV 295
+ + G L ++ LL ++ K + C I + GN++ ++ +G
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGP 320
Query: 296 GPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 353
LVN+++ ++ + W S +V G ++ L P R+V
Sbjct: 321 QALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
Query: 354 TVCLEGLENILKVGEAEKNM 373
CL L N+ ++ M
Sbjct: 378 QNCLWTLRNLSDAATKQEGM 397
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQF----------EAAWALTNIASGTSENTK 76
+ G +PR V+ L+R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 25/250 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 372
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 428
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ D A +
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY------GALPYLLGLLTH 261
G+ P +V+LL PS LI A TVG I C + GA+P L+ LL
Sbjct: 489 GL-PVVVKLLHPPSHWPLIKA--TVGLIRN----LALCPANHAPLREQGAIPRLVQLLVR 541
Query: 262 SHKKSIKKEA 271
+H+ + ++ +
Sbjct: 542 AHQDTQRRTS 551
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G + L+AQL ++ S+LRN +W +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-A 274
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ + ++ + + + A W LS + T +K G
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 332
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 391
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 312 VRTVLRAGDREDITEPAICALRHLTS 337
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 179 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 237
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 238 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 293
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 294 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 353
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 260
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 354 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 405
Query: 261 HSHKKSIKKEA 271
+H+ + ++ +
Sbjct: 406 RAHQDTQRRTS 416
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 186
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 187 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 243
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 244 QRLVQNCLWTLRNLSDAATKQEGM 267
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 84 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHSND 179
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 143 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 180 -EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 260
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 261 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 316
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 317 VRTVLRAGDREDITEPAICALRHLTS 342
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 187
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 188 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 244
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 245 QRLVQNCLWTLRNLSDAATKQEGM 268
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 85 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 144 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 261
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 262 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 317
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 318 VRTVLRAGDREDITEPAICALRHLTS 343
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 184
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 185 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 241
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 242 QRLVQNCLWTLRNLSDAATKQEGM 265
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 29/339 (8%)
Query: 6 WSDDSSLQLEATTQFRKLLSIERSPPI------------EEVIQSGVV--PRFVEFLMRE 51
+ DD+ L A + KLL+ E + +E + ++ P+ V ++R
Sbjct: 9 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 68
Query: 52 DYPQLQFEAAW----ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
E A L N+ S E + G +P VK+L SP D V A+ L
Sbjct: 69 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 127
Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 167
N+ + V G L ++A LN + + L T L G + +
Sbjct: 128 NLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASG 186
Query: 168 LP-ALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 225
P AL ++ + E++L L LS +++K A++EAG L L PS ++
Sbjct: 187 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLV 245
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
L T+ N+ Q G L LLG S ++ A +SN+T N
Sbjct: 246 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKN 301
Query: 286 IQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATS 322
V G + LV + A DI + A A+ + TS
Sbjct: 302 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 340
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 172
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 173 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 229
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 230 QRLVQNCLWTLRNLSDAATKQEGM 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 70 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 128
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 129 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 187
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 188 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 246
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 247 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 302
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 303 VRTVLRAGDREDITEPAICALRHLTS 328
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 170 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 228
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 229 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 284
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 285 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 344
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 260
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 345 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 396
Query: 261 HSHKKSIKKEA 271
+H+ + ++ +
Sbjct: 397 RAHQDTQRRTS 407
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 299 VRTVLRAGDREDITEPAICALRHLTS 324
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 166 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 224
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 225 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 280
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 281 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 340
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 260
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 341 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 392
Query: 261 HSHKKSIKKEA 271
+H+ + ++ +
Sbjct: 393 RAHQDTQRRTS 403
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 170
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 171 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 227
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 228 QRLVQNCLWTLRNLSDAATKQEGM 251
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 68 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 126
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 127 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 185
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 186 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 244
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 245 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 300
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 301 VRTVLRAGDREDITEPAICALRHLTS 326
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 168 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 226
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 227 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 282
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 283 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 342
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 260
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 343 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 394
Query: 261 HSHKKSIKKEA 271
+H+ + ++ +
Sbjct: 395 RAHQDTQRRTS 405
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 183
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 184 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGM 264
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 81 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 140 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 258 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTS 339
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 131/339 (38%), Gaps = 29/339 (8%)
Query: 6 WSDDSSLQLEATTQFRKLLSIERSPPI------------EEVIQSGVV--PRFVEFLMRE 51
+ DD+ L A + KLL+ E + +E + ++ P+ V ++R
Sbjct: 10 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 69
Query: 52 DYPQLQFEAAW----ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
E A L N+ S E + G +P VK+L SP D V A+ L
Sbjct: 70 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 128
Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 167
N+ + V G L ++A LN + + L T L G + +
Sbjct: 129 NLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASG 187
Query: 168 LP-ALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 225
P AL ++ + E++L L LS +++K A++EAG L L PS ++
Sbjct: 188 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLV 246
Query: 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285
L T+ N+ Q G L LLG S ++ A +SN+T N
Sbjct: 247 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKN 302
Query: 286 IQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATS 322
V G + LV + A DI + A A+ + TS
Sbjct: 303 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 341
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 185
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 186 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 242
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 243 QRLVQNCLWTLRNLSDAATKQEGM 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 83 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 142 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 259
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 260 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 316 VRTVLRAGDREDITEPAICALRHLTS 341
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 181
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 182 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 238
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 239 QRLVQNCLWTLRNLSDAATKQEGM 262
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 79 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 138 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 255
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 256 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 312 VRTVLRAGDREDITEPAICALRHLTS 337
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G L+AQL ++ S+LRN +W +
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 167
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ ++ + + + A W LS + T +K G
Sbjct: 168 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 225
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 226 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 284
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 285 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L ++ LL ++ K + C I + GN++ ++
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 168
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+++ ++ + W S +V G ++ L P
Sbjct: 169 SGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 225
Query: 350 PRIVTVCLEGLENILKVGEAEKNM 373
R+V CL L N+ ++ M
Sbjct: 226 QRLVQNCLWTLRNLSDAATKQEGM 249
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 11/266 (4%)
Query: 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120
A L N+ S E + G +P VK+L SP D V A+ L N+ + V
Sbjct: 66 AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 124
Query: 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP-ALAQLVHS-N 178
G L ++A LN + + L T L G + + P AL ++ +
Sbjct: 125 RLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 183
Query: 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238
E++L L LS +++K A++EAG L L PS ++ L T+ N+
Sbjct: 184 YEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 242
Query: 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298
Q G L LLG S ++ A +SN+T N V G + L
Sbjct: 243 ATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Query: 299 VNLLQNA--EFDIKKEAAWAISNATS 322
V + A DI + A A+ + TS
Sbjct: 299 VRTVLRAGDREDITEPAICALRHLTS 324
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP 94
++ SG V + Y +L + + L + S S N +++ G + L P
Sbjct: 166 ILASGGPQALVNIMRTYTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDP 224
Query: 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF-C 153
S + + +W L N++ + + + G L+ LL ++++ A LSN C
Sbjct: 225 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS----DDINVVTCAAGILSNLTC 280
Query: 154 RG-KPQPPFDQVRPALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQA----VIEA 207
K + QV + ++ + D E +T+ A AL +L+ + A +
Sbjct: 281 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 340
Query: 208 GVCPRLVELLGHPSPSVLIPALRTVGNI-------VTGDDFQTQCIITYGALPYLLGLLT 260
G+ P +V+LL PS LI A TVG I + Q GA+P L+ LL
Sbjct: 341 GL-PVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQ-----GAIPRLVQLLV 392
Query: 261 HSHKKSIKKEA 271
+H+ + ++ +
Sbjct: 393 RAHQDTQRRTS 403
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 98 VREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAK------LSMLRNATWTLS 150
+R A AL N+ GD L +G L+AQL ++ S+LRN +W +
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWR-A 158
Query: 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210
+ K V+ ++ + + + A W LS + T +K G
Sbjct: 159 DVNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGAL 216
Query: 211 PRLVELLGHPSPSVLIPA-------LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH 263
LV L + S + + LR V +++ ++ Q + L LL L SH
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SH 275
Query: 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319
+I AC T+ N++A N +A+ D G V L NL+ + I +A A+ N
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 128 PLLAQLNERAKLSML----RNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 183
P+L R +SML R T NF + F V P LP + L+H DE V
Sbjct: 139 PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198
Query: 184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 216
A AL +L+ NDK++ V V RL EL
Sbjct: 199 ASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 30/161 (18%)
Query: 42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 101
P+ VE Q Q A TN+ T+ V+ D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 102 AVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSML-----RNATWTLSNFCRG- 155
A +A+ D+ RD + L NE ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232
Query: 156 KPQPPFDQV---------RPALPAL-AQLVHSNDEEVLTDA 186
K +D + + LP L L +D E++T A
Sbjct: 233 KKNTVYDDIIEAAGELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 265
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 6 WSDDSSLQLEATTQFRKLLSIERSPPI------------EEVIQSGVV--PRFVEFLMRE 51
+ DD+ L A + KLL+ E + +E + ++ P+ V ++R
Sbjct: 4 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 63
Query: 52 DYPQLQFEAAW----ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
E A L N+ S E + G +P VK+L SP D V A+ L
Sbjct: 64 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 122
Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNE 135
N+ + V G L ++A LN+
Sbjct: 123 NLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV++LG P SVL A+ T+
Sbjct: 66 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 121
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 265
N++ + + G L ++ LL ++ K
Sbjct: 122 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK 154
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 6 WSDDSSLQLEATTQFRKLLSIERSPPI------------EEVIQSGVV--PRFVEFLMRE 51
+ DD+ L A + KLL+ E + +E + ++ P+ V ++R
Sbjct: 4 YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 63
Query: 52 DYPQLQFEAAW----ALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG 107
E A L N+ S E + G +P VK+L SP D V A+ L
Sbjct: 64 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 122
Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNE 135
N+ + V G L ++A LN+
Sbjct: 123 NLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 178 NDEEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232
N +V T C A LS+ +G + A+ ++G P LV+ LG P SVL A+ T+
Sbjct: 12 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKXLGSPVDSVLFYAITTL 67
Query: 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA-CWTISNITAGNRDQIQAVID 291
N++ + + G L + LL ++ K + C I + GN++ ++
Sbjct: 68 HNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQI--LAYGNQESKLIILA 125
Query: 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATS--GGTHEQIKYLVREGCIKPLCDLFVCPD 349
+G LVN+ + ++ + W S +V G + L P
Sbjct: 126 SGGPQALVNIXRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPS 182
Query: 350 PRIVTVCLEGLENI 363
R+V CL L N+
Sbjct: 183 QRLVQNCLWTLRNL 196
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 37 QSGVVPRFVEFLMREDY----------PQLQFEAAWALTNIASGTS----------ENTK 76
+ G +PR V+ L+R Q QF I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 112
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 265 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 319
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 320 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 375
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 376 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 409
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 265 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 319
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 320 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 375
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 376 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 409
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 265 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 319
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 320 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 375
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 376 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 409
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 265 KSIKKEACWTISNITAGNRD----QIQAVIDAGLVGPLV-NLLQNAEFDIKKEAAWAISN 319
+S ++ T N AG D Q Q AGLVG LV + L N E D ++ + A+
Sbjct: 182 QSTDAQSALTARNDLAGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELISTAMLL 241
Query: 320 ATSGGTHEQIKYLVREGCI----KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGT 375
+G HE + I P + D +V +E L L + +
Sbjct: 242 LIAG--HETTASMTSLSVITLLDHPEQYAALRADRSLVPGAVEELLRYLAIADIAGGR-V 298
Query: 376 ATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 409
ATAD+ QL+ EG+ + ++ + D +YE
Sbjct: 299 ATADIEVEGQLIRAGEGVIVVNSIANRDGT-VYE 331
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 430
Query: 144 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 201
+ T WTLS + QPP ++P + L + + +++ V AC A
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF----------- 479
Query: 202 QAVIEAGVCPRLVELLGH 219
A +E C LV L +
Sbjct: 480 -ATLEEEACTELVPYLAY 496
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 417
Query: 144 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195
+ T WTLS + QPP ++P + L + + +++ V AC A + L +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P+ +LL V+E + LG +A + ++ LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKK-ALVR 455
Query: 144 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195
+ T WTLS + QPP ++P + L + + +++ V AC A + L +
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 33/179 (18%)
Query: 48 LMREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWAL 106
++ D L++ A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 107 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGK--------- 156
G V +L +P + QL ++ + +R T + L C GK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 641
Query: 157 ---PQPPFDQVR-PALPALAQLVHSNDEEVLTD-ACWALSYLSDGTNDKIQAVIEAGVC 210
+ P D VR A+ AL+ ++ E++ A ++LS TN + + + G C
Sbjct: 642 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 700
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 140
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 141 MLRNATWTLSNF 152
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 33 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92
E+ I V+P E + D+ + + A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMK 418
Query: 93 SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLSMLRNATWTLS 150
PS VR+ W +G + P + ++ L PLL L E A+ + N W S
Sbjct: 419 DPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 151 NF 152
+
Sbjct: 476 SL 477
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 140
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 141 MLRNATWTLSNF 152
+ N W S+
Sbjct: 341 VASNVCWAFSSL 352
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 140
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 141 MLRNATWTLSNF 152
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--RAKLS 140
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 141 MLRNATWTLSNF 152
+ N W S+
Sbjct: 466 VASNVCWAFSSL 477
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 31 PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWA---------LTNIASGTS--------- 72
P++E + V+PR V+ L++ + AA + I G +
Sbjct: 394 PLQE---AAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARD 450
Query: 73 -ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 131
N + +P+FV+LL S ++++ A L +A D D + ++GA PL+
Sbjct: 451 PMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDAEGASAPLME 509
Query: 132 QLNER 136
L+ R
Sbjct: 510 LLHSR 514
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 101 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 155
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEA 487
Query: 156 KPQPPFDQVRPAL 168
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100
V FVE + D + + A A +I G + + H A+P + L+ S V+E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 101 QAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSN----FCRG 155
W +G +A D G + L L + K++ N +WT+ N
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEA 487
Query: 156 KPQPPFDQVRPAL 168
P P ++ PAL
Sbjct: 488 TPSPIYN-FYPAL 499
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 75
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 76 KVVIDHGAVPIFVKLLASPSDDVREQA 102
+ +I G P V L D+++E+A
Sbjct: 128 RKIISRGFTPRAVGRL---HDELQERA 151
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 75
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 76 KVVIDHGAVPIFVKLLASPSDDVREQA 102
+ +I G P V L D+++E+A
Sbjct: 135 RKIISRGFTPRAVGRL---HDELQERA 158
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 75
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 76 KVVIDHGAVPIFVKLLASPSDDVREQA 102
+ +I G P V L D+++E+A
Sbjct: 118 RKIISRGFTPRAVGRL---HDELQERA 141
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 75
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 76 KVVIDHGAVPIFVKLLASPSDDVREQA 102
+ +I G P V L D+++E+A
Sbjct: 119 RKIISRGFTPRAVGRL---HDELQERA 142
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT 75
A T+ + I R + ++GV+PRF + RED +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 76 KVVIDHGAVPIFVKLLASPSDDVREQA 102
+ +I G P V L D+++E+A
Sbjct: 126 RKIISRGFTPRAVGRL---HDELQERA 149
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLR 143
+P+ +LL V+E + LG +A + L + LIP L Q K +++R
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPE--LIPHLIQCLSDKK-ALVR 455
Query: 144 NAT-WTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI 201
+ T WTLS + QPP ++P L + + +++ V AC A
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAF----------- 504
Query: 202 QAVIEAGVCPRLVELLGH 219
A +E C LV L +
Sbjct: 505 -ATLEEEACTELVPYLAY 521
>pdb|1WCU|A Chain A, Cbm29_1, A Family 29 Carbohydrate Binding Module From
Piromyces Equi
Length = 153
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 383 YAQLVEEAEGLEKIENLQSHDNNEIYE----KAVKILETYWLEEDDET----IAAGDGPQ 434
Y Q+ E EGL K++ ++ +D E + ++ Y E DDE I DGP
Sbjct: 65 YLQVKTETEGLVKVQGVRGYDETEAFNVGSFRSSSDFTEYKFEVDDEYQFDRIIVQDGPA 124
Query: 435 PGFP 438
P
Sbjct: 125 SNIP 128
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 49 MREDYPQLQFEAAWALTNIASGTSENTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALG 107
+ D L++ A+ + +GT N+ V + H AV + +DDVR AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT-WTLSNFCRGKP-QPPFDQVR 165
V +L +P + QL ++ + +R T + L C GK Q D +
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653
Query: 166 P 166
P
Sbjct: 654 P 654
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNAT 146
V L A SD R +W+LG++ G PR R+ V L+ +LA +S++ N
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECV----ELVRVLA-----PNISVIGNHD 66
Query: 147 WTLSNFCRGK 156
W C G+
Sbjct: 67 WA----CIGR 72
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 135
A+P ++L+ PS VR+ A W +G + P + ++ L PLL L E
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIE 458
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 319 NATSGGTHEQIKY-----LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 373
+AT E+++Y LV + + P+ L D I +C G +NIL V A +
Sbjct: 217 SATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIARTSD 276
Query: 374 GTATA---DVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAV 412
T D+ +Y+Q++ + G+E I +S + N ++ KA+
Sbjct: 277 HIETLYELDI-EYSQVLAKECGVENIRRAESLNGNPLFSKAL 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,837,371
Number of Sequences: 62578
Number of extensions: 571173
Number of successful extensions: 2476
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 193
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)