Query 012897
Match_columns 454
No_of_seqs 323 out of 2474
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.5E-63 3.2E-68 452.5 45.2 442 2-453 72-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 5.8E-60 1.3E-64 397.7 34.2 443 3-452 78-526 (526)
3 KOG0166 Karyopherin (importin) 100.0 9.4E-43 2E-47 317.0 25.7 362 2-367 115-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.7E-41 5.9E-46 285.1 18.4 360 2-365 120-496 (526)
5 PLN03200 cellulose synthase-in 100.0 2.3E-37 5.1E-42 321.9 40.6 408 1-423 194-767 (2102)
6 PLN03200 cellulose synthase-in 100.0 2.9E-37 6.3E-42 321.2 41.0 411 1-422 409-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 6.3E-31 1.4E-35 224.4 22.1 395 3-420 92-493 (550)
8 KOG4224 Armadillo repeat prote 100.0 1E-30 2.3E-35 223.1 22.8 389 5-430 135-532 (550)
9 PF05804 KAP: Kinesin-associat 100.0 6.8E-25 1.5E-29 212.0 36.7 381 11-420 264-649 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.3E-24 5E-29 208.3 30.8 356 1-371 295-655 (708)
11 KOG1048 Neural adherens juncti 99.9 7.2E-20 1.6E-24 173.2 26.6 366 40-423 234-687 (717)
12 KOG0168 Putative ubiquitin fus 99.9 4.8E-19 1E-23 167.1 26.4 385 2-403 173-655 (1051)
13 KOG1048 Neural adherens juncti 99.8 8.6E-18 1.9E-22 159.3 22.7 360 2-369 239-688 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 7.8E-16 1.7E-20 148.1 35.1 394 2-419 44-461 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 2.1E-16 4.6E-21 151.9 31.1 369 41-420 40-420 (503)
16 KOG4500 Rho/Rac GTPase guanine 99.8 2.7E-16 5.9E-21 138.2 24.4 396 5-415 51-514 (604)
17 KOG2122 Beta-catenin-binding p 99.8 2.8E-16 6.1E-21 155.8 26.0 353 14-370 212-606 (2195)
18 KOG4199 Uncharacterized conser 99.8 5.6E-16 1.2E-20 132.1 24.1 310 6-322 117-444 (461)
19 KOG1222 Kinesin associated pro 99.8 1.9E-15 4E-20 134.9 27.4 384 1-406 309-698 (791)
20 KOG2171 Karyopherin (importin) 99.7 5.7E-15 1.2E-19 145.4 28.9 359 2-370 124-554 (1075)
21 KOG4199 Uncharacterized conser 99.7 1.1E-14 2.3E-19 124.4 26.2 317 38-363 103-442 (461)
22 KOG1222 Kinesin associated pro 99.7 6.8E-15 1.5E-19 131.4 25.6 377 11-416 278-659 (791)
23 KOG2171 Karyopherin (importin) 99.7 1.2E-14 2.6E-19 143.1 29.5 351 7-369 91-508 (1075)
24 KOG2023 Nuclear transport rece 99.7 9.7E-16 2.1E-20 141.6 18.1 393 3-420 97-617 (885)
25 KOG4500 Rho/Rac GTPase guanine 99.7 5.8E-14 1.2E-18 123.8 28.2 357 2-363 93-517 (604)
26 PRK09687 putative lyase; Provi 99.7 4E-15 8.8E-20 131.4 20.0 257 38-362 22-279 (280)
27 KOG1293 Proteins containing ar 99.7 5.6E-14 1.2E-18 130.4 24.7 362 4-368 17-536 (678)
28 PRK09687 putative lyase; Provi 99.7 1.9E-14 4.2E-19 127.1 20.2 249 2-319 29-279 (280)
29 KOG2122 Beta-catenin-binding p 99.7 3.9E-15 8.5E-20 147.9 16.9 268 12-282 313-603 (2195)
30 PRK13800 putative oxidoreducta 99.6 8.4E-14 1.8E-18 143.6 26.7 270 2-362 627-896 (897)
31 PRK13800 putative oxidoreducta 99.6 3.8E-13 8.1E-18 138.9 27.5 276 39-417 621-896 (897)
32 KOG2023 Nuclear transport rece 99.6 2.6E-14 5.7E-19 132.3 15.7 315 82-422 128-507 (885)
33 PF04826 Arm_2: Armadillo-like 99.6 2.6E-13 5.7E-18 117.0 20.1 239 164-411 10-253 (254)
34 PF04826 Arm_2: Armadillo-like 99.6 2.9E-13 6.2E-18 116.8 19.6 197 36-239 9-207 (254)
35 PF01602 Adaptin_N: Adaptin N 99.5 3.4E-12 7.4E-17 126.1 23.3 321 2-366 48-370 (526)
36 cd00020 ARM Armadillo/beta-cat 99.5 1.3E-12 2.9E-17 101.5 14.2 119 34-154 2-120 (120)
37 KOG1293 Proteins containing ar 99.5 3.6E-11 7.9E-16 112.0 25.3 361 45-421 15-534 (678)
38 PF01602 Adaptin_N: Adaptin N 99.5 2.6E-11 5.6E-16 119.8 26.0 348 9-419 19-368 (526)
39 PTZ00429 beta-adaptin; Provisi 99.5 1.5E-10 3.3E-15 114.6 30.6 365 2-420 74-471 (746)
40 cd00256 VATPase_H VATPase_H, r 99.5 9.1E-11 2E-15 107.9 27.0 322 82-419 53-424 (429)
41 PTZ00429 beta-adaptin; Provisi 99.5 4.3E-10 9.4E-15 111.5 32.9 287 3-322 39-326 (746)
42 KOG0168 Putative ubiquitin fus 99.4 4.7E-11 1E-15 114.0 22.9 260 41-304 169-437 (1051)
43 cd00020 ARM Armadillo/beta-cat 99.4 2.4E-12 5.2E-17 100.0 11.8 118 204-322 3-120 (120)
44 cd00256 VATPase_H VATPase_H, r 99.4 8E-11 1.7E-15 108.3 23.2 313 7-322 65-425 (429)
45 KOG1241 Karyopherin (importin) 99.4 2.1E-11 4.5E-16 115.2 17.2 356 4-371 98-483 (859)
46 KOG0213 Splicing factor 3b, su 99.3 5.5E-11 1.2E-15 111.9 13.4 341 2-365 722-1065(1172)
47 KOG1241 Karyopherin (importin) 99.3 1.5E-09 3.2E-14 102.9 22.5 356 8-369 186-588 (859)
48 KOG1059 Vesicle coat complex A 99.2 7.5E-09 1.6E-13 97.7 25.5 214 2-237 150-365 (877)
49 KOG0946 ER-Golgi vesicle-tethe 99.2 5.6E-08 1.2E-12 92.8 29.1 325 40-370 23-404 (970)
50 KOG2160 Armadillo/beta-catenin 99.2 5.5E-09 1.2E-13 91.7 19.9 190 178-369 95-286 (342)
51 KOG2759 Vacuolar H+-ATPase V1 99.2 4.8E-09 1E-13 93.3 18.9 274 3-280 121-438 (442)
52 KOG2160 Armadillo/beta-catenin 99.1 6.2E-09 1.3E-13 91.4 18.5 187 6-195 93-282 (342)
53 KOG2759 Vacuolar H+-ATPase V1 99.1 1.1E-08 2.4E-13 91.0 19.6 309 10-322 80-438 (442)
54 COG5215 KAP95 Karyopherin (imp 99.1 2.8E-08 6E-13 91.6 19.8 347 11-369 149-533 (858)
55 KOG1789 Endocytosis protein RM 99.1 8E-07 1.7E-11 87.7 30.3 331 11-348 1740-2142(2235)
56 PF03224 V-ATPase_H_N: V-ATPas 99.0 2.8E-09 6.2E-14 96.9 12.4 228 83-313 56-305 (312)
57 KOG1062 Vesicle coat complex A 99.0 1.7E-07 3.8E-12 89.9 24.3 177 213-420 318-495 (866)
58 COG5181 HSH155 U2 snRNP splice 99.0 8E-10 1.7E-14 102.3 8.4 265 82-366 604-871 (975)
59 KOG1062 Vesicle coat complex A 99.0 8.9E-08 1.9E-12 91.8 22.0 109 166-287 313-422 (866)
60 KOG0213 Splicing factor 3b, su 99.0 3.8E-07 8.2E-12 86.8 25.5 379 3-418 643-1063(1172)
61 KOG1061 Vesicle coat complex A 99.0 5.9E-08 1.3E-12 93.0 20.2 336 2-370 55-420 (734)
62 KOG1824 TATA-binding protein-i 99.0 9.5E-08 2.1E-12 93.0 20.6 352 2-368 11-405 (1233)
63 KOG1061 Vesicle coat complex A 99.0 2.9E-08 6.3E-13 95.0 16.0 173 5-194 95-267 (734)
64 COG5215 KAP95 Karyopherin (imp 98.9 2.8E-07 6E-12 85.2 21.4 351 8-368 190-588 (858)
65 KOG0946 ER-Golgi vesicle-tethe 98.9 3.4E-06 7.3E-11 81.1 29.0 343 3-347 129-535 (970)
66 PF03224 V-ATPase_H_N: V-ATPas 98.9 3.3E-08 7.1E-13 90.0 15.5 227 126-355 57-304 (312)
67 KOG4413 26S proteasome regulat 98.9 4E-06 8.6E-11 72.6 25.7 358 3-365 89-484 (524)
68 COG5181 HSH155 U2 snRNP splice 98.9 2.1E-07 4.5E-12 86.8 19.1 337 40-419 605-946 (975)
69 KOG1517 Guanine nucleotide bin 98.9 6.2E-08 1.3E-12 95.2 16.3 270 10-290 450-742 (1387)
70 KOG1824 TATA-binding protein-i 98.9 5.4E-08 1.2E-12 94.7 15.2 272 86-370 9-291 (1233)
71 KOG0212 Uncharacterized conser 98.9 1E-07 2.2E-12 87.8 16.2 322 36-368 81-409 (675)
72 KOG1059 Vesicle coat complex A 98.9 1E-06 2.2E-11 83.7 22.5 275 39-345 144-422 (877)
73 KOG1242 Protein containing ada 98.8 1.4E-06 3E-11 81.9 22.3 341 3-371 103-450 (569)
74 KOG1242 Protein containing ada 98.8 3.8E-06 8.2E-11 79.1 25.1 344 40-420 97-444 (569)
75 COG5369 Uncharacterized conser 98.8 5.4E-08 1.2E-12 89.1 11.2 307 100-418 407-739 (743)
76 COG5369 Uncharacterized conser 98.8 1.3E-07 2.8E-12 86.7 13.5 286 32-320 424-739 (743)
77 KOG0212 Uncharacterized conser 98.8 8.5E-07 1.8E-11 81.9 18.8 345 2-363 90-442 (675)
78 KOG1060 Vesicle coat complex A 98.8 3.5E-06 7.7E-11 81.0 23.2 318 3-369 115-462 (968)
79 KOG3678 SARM protein (with ste 98.8 3E-07 6.4E-12 83.1 15.2 273 75-363 173-450 (832)
80 KOG3678 SARM protein (with ste 98.8 5.5E-07 1.2E-11 81.4 16.4 274 32-322 173-452 (832)
81 PF14664 RICTOR_N: Rapamycin-i 98.8 4.6E-06 1E-10 76.8 22.7 334 65-420 8-364 (371)
82 KOG1517 Guanine nucleotide bin 98.7 4.4E-07 9.6E-12 89.4 15.6 228 13-243 487-738 (1387)
83 KOG1060 Vesicle coat complex A 98.7 8.7E-06 1.9E-10 78.4 23.5 355 2-422 41-460 (968)
84 KOG0211 Protein phosphatase 2A 98.7 1.8E-06 3.9E-11 85.4 19.7 376 5-417 246-661 (759)
85 KOG0211 Protein phosphatase 2A 98.7 2.5E-06 5.5E-11 84.4 19.1 374 10-424 212-629 (759)
86 TIGR02270 conserved hypothetic 98.6 6.2E-06 1.3E-10 76.9 20.5 210 41-323 88-297 (410)
87 KOG2973 Uncharacterized conser 98.6 4.1E-06 9E-11 71.9 16.9 270 1-280 8-315 (353)
88 KOG0915 Uncharacterized conser 98.6 4.3E-06 9.3E-11 85.9 19.1 373 3-407 825-1232(1702)
89 KOG1058 Vesicle coat complex C 98.6 9.7E-06 2.1E-10 77.7 19.9 358 3-423 27-466 (948)
90 PF05536 Neurochondrin: Neuroc 98.6 0.00011 2.3E-09 71.7 27.4 375 2-398 11-458 (543)
91 KOG1789 Endocytosis protein RM 98.5 3.8E-05 8.2E-10 76.4 22.9 290 7-305 1783-2142(2235)
92 KOG2973 Uncharacterized conser 98.5 4.7E-05 1E-09 65.6 20.7 271 127-420 6-315 (353)
93 KOG1240 Protein kinase contain 98.5 1.1E-05 2.4E-10 81.1 18.2 296 83-419 423-724 (1431)
94 KOG4413 26S proteasome regulat 98.5 0.00019 4.2E-09 62.4 22.9 328 82-417 82-436 (524)
95 KOG2259 Uncharacterized conser 98.5 3.6E-05 7.7E-10 72.9 19.8 220 129-366 203-440 (823)
96 TIGR02270 conserved hypothetic 98.5 0.00013 2.7E-09 68.3 23.5 211 82-363 54-265 (410)
97 PF14664 RICTOR_N: Rapamycin-i 98.4 4.6E-05 1E-09 70.3 19.6 340 17-367 4-366 (371)
98 KOG4646 Uncharacterized conser 98.4 6.4E-06 1.4E-10 61.7 11.0 154 250-419 16-169 (173)
99 KOG2259 Uncharacterized conser 98.4 1.5E-05 3.2E-10 75.4 16.1 249 87-358 203-468 (823)
100 COG5240 SEC21 Vesicle coat com 98.4 2.8E-05 6.1E-10 72.4 17.2 282 5-322 273-555 (898)
101 KOG1077 Vesicle coat complex A 98.4 0.00071 1.5E-08 64.9 26.3 350 41-423 113-491 (938)
102 COG1413 FOG: HEAT repeat [Ener 98.4 0.00015 3.3E-09 67.2 22.3 245 2-323 49-305 (335)
103 KOG4646 Uncharacterized conser 98.4 5.6E-06 1.2E-10 62.0 9.8 115 39-156 16-130 (173)
104 PF12460 MMS19_C: RNAPII trans 98.3 0.00041 8.9E-09 66.0 24.5 345 3-369 6-398 (415)
105 PF12348 CLASP_N: CLASP N term 98.3 2E-05 4.4E-10 68.5 14.4 189 6-202 17-213 (228)
106 COG5231 VMA13 Vacuolar H+-ATPa 98.3 4.8E-05 1E-09 65.8 15.5 267 140-421 123-429 (432)
107 KOG1991 Nuclear transport rece 98.3 0.001 2.2E-08 66.4 26.1 107 7-116 429-537 (1010)
108 COG1413 FOG: HEAT repeat [Ener 98.3 0.0002 4.3E-09 66.4 20.3 249 39-364 43-303 (335)
109 PF05536 Neurochondrin: Neuroc 98.2 0.00013 2.8E-09 71.1 19.3 237 83-322 6-261 (543)
110 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00018 3.9E-09 62.3 17.7 230 46-279 156-427 (432)
111 COG5240 SEC21 Vesicle coat com 98.2 0.00047 1E-08 64.6 21.5 307 61-419 248-554 (898)
112 COG5096 Vesicle coat complex, 98.2 0.0043 9.2E-08 61.7 28.9 169 5-196 28-196 (757)
113 PF10165 Ric8: Guanine nucleot 98.2 0.00023 5.1E-09 67.8 20.0 264 18-284 3-341 (446)
114 KOG0915 Uncharacterized conser 98.2 0.00055 1.2E-08 71.2 22.6 342 11-366 972-1345(1702)
115 KOG1240 Protein kinase contain 98.2 2.8E-05 6.1E-10 78.4 13.4 302 40-369 423-729 (1431)
116 PF00514 Arm: Armadillo/beta-c 98.2 4.2E-06 9E-11 50.3 4.7 41 71-111 1-41 (41)
117 KOG2062 26S proteasome regulat 98.2 7.4E-05 1.6E-09 71.7 15.0 242 40-325 414-656 (929)
118 PF00514 Arm: Armadillo/beta-c 98.1 5.3E-06 1.2E-10 49.8 4.6 41 282-322 1-41 (41)
119 PF12348 CLASP_N: CLASP N term 98.1 3.3E-05 7.1E-10 67.2 10.9 187 176-370 17-211 (228)
120 COG5096 Vesicle coat complex, 98.1 0.002 4.2E-08 64.0 23.5 136 2-155 61-196 (757)
121 KOG1077 Vesicle coat complex A 98.1 0.00077 1.7E-08 64.7 19.8 291 3-317 118-428 (938)
122 KOG1943 Beta-tubulin folding c 98.1 0.0027 6E-08 64.1 24.4 262 38-322 340-611 (1133)
123 KOG1078 Vesicle coat complex C 98.0 0.0015 3.2E-08 63.6 21.1 286 83-419 246-531 (865)
124 KOG1991 Nuclear transport rece 98.0 0.0041 8.9E-08 62.3 24.6 303 14-327 390-716 (1010)
125 KOG2734 Uncharacterized conser 98.0 0.0021 4.6E-08 58.4 20.6 239 17-260 105-371 (536)
126 KOG2734 Uncharacterized conser 98.0 0.0066 1.4E-07 55.4 23.3 262 103-368 105-403 (536)
127 PF13646 HEAT_2: HEAT repeats; 98.0 2.3E-05 5E-10 56.6 6.6 87 41-150 1-88 (88)
128 PF13513 HEAT_EZ: HEAT-like re 98.0 1E-05 2.2E-10 52.4 3.9 55 265-320 1-55 (55)
129 KOG2274 Predicted importin 9 [ 98.0 0.0012 2.6E-08 65.3 19.3 316 6-334 460-792 (1005)
130 KOG1078 Vesicle coat complex C 97.9 0.00059 1.3E-08 66.3 16.4 260 41-322 247-532 (865)
131 PF12755 Vac14_Fab1_bd: Vacuol 97.9 5.2E-05 1.1E-09 55.1 7.2 95 267-365 2-96 (97)
132 PF13646 HEAT_2: HEAT repeats; 97.9 2.4E-05 5.2E-10 56.5 5.2 87 168-276 1-88 (88)
133 KOG1943 Beta-tubulin folding c 97.9 0.045 9.7E-07 55.8 28.8 339 2-366 347-706 (1133)
134 KOG1248 Uncharacterized conser 97.8 0.016 3.6E-07 59.4 25.4 236 129-369 658-902 (1176)
135 KOG4535 HEAT and armadillo rep 97.8 8.9E-05 1.9E-09 67.8 8.6 303 10-323 269-604 (728)
136 PF10165 Ric8: Guanine nucleot 97.8 0.0041 8.9E-08 59.5 20.2 229 5-237 41-337 (446)
137 KOG1967 DNA repair/transcripti 97.8 0.00029 6.3E-09 69.5 11.6 189 84-278 817-1022(1030)
138 KOG4535 HEAT and armadillo rep 97.8 0.00012 2.6E-09 67.0 8.1 275 3-280 302-603 (728)
139 KOG1020 Sister chromatid cohes 97.7 0.067 1.5E-06 56.5 28.1 389 2-419 822-1253(1692)
140 PF09759 Atx10homo_assoc: Spin 97.7 0.00022 4.9E-09 51.7 7.9 67 56-122 2-70 (102)
141 PF13513 HEAT_EZ: HEAT-like re 97.7 4.9E-05 1.1E-09 49.1 4.0 55 180-235 1-55 (55)
142 KOG1248 Uncharacterized conser 97.7 0.0041 8.8E-08 63.6 18.7 242 44-290 658-909 (1176)
143 PF12460 MMS19_C: RNAPII trans 97.7 0.0048 1E-07 58.8 18.4 300 9-324 56-396 (415)
144 KOG0567 HEAT repeat-containing 97.7 0.0061 1.3E-07 51.8 16.4 256 41-363 5-278 (289)
145 KOG2274 Predicted importin 9 [ 97.6 0.0058 1.3E-07 60.6 18.3 244 43-294 453-703 (1005)
146 PF12717 Cnd1: non-SMC mitotic 97.6 0.0019 4E-08 53.6 12.8 93 179-281 1-93 (178)
147 PF08569 Mo25: Mo25-like; Int 97.5 0.0033 7E-08 57.2 14.2 202 77-280 71-283 (335)
148 KOG0414 Chromosome condensatio 97.5 0.0039 8.4E-08 63.6 15.7 146 163-324 916-1066(1251)
149 KOG1058 Vesicle coat complex C 97.5 0.0045 9.8E-08 60.1 15.2 219 84-324 245-465 (948)
150 PF12717 Cnd1: non-SMC mitotic 97.5 0.0039 8.5E-08 51.6 13.4 93 221-323 1-93 (178)
151 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00028 6E-09 51.3 5.5 87 142-229 3-89 (97)
152 KOG2025 Chromosome condensatio 97.5 0.022 4.8E-07 55.3 18.9 128 141-276 62-189 (892)
153 smart00185 ARM Armadillo/beta- 97.4 0.00044 9.5E-09 41.4 5.2 39 72-110 2-40 (41)
154 PF11841 DUF3361: Domain of un 97.4 0.0081 1.8E-07 47.5 12.9 130 202-332 5-141 (160)
155 PF05918 API5: Apoptosis inhib 97.4 0.024 5.2E-07 54.7 18.6 297 42-369 26-349 (556)
156 KOG0567 HEAT repeat-containing 97.4 0.017 3.6E-07 49.3 15.2 224 41-321 38-279 (289)
157 smart00185 ARM Armadillo/beta- 97.3 0.00065 1.4E-08 40.6 5.0 38 284-321 3-40 (41)
158 PF12719 Cnd3: Nuclear condens 97.3 0.035 7.5E-07 50.4 18.1 171 39-220 26-209 (298)
159 PF09759 Atx10homo_assoc: Spin 97.3 0.0013 2.8E-08 47.8 6.9 67 224-290 2-69 (102)
160 KOG3036 Protein involved in ce 97.2 0.024 5.2E-07 47.7 14.6 141 14-156 97-249 (293)
161 KOG1967 DNA repair/transcripti 97.2 0.0033 7.1E-08 62.5 10.6 192 126-321 817-1023(1030)
162 PF08569 Mo25: Mo25-like; Int 97.2 0.086 1.9E-06 48.1 19.0 201 165-369 75-287 (335)
163 KOG2032 Uncharacterized conser 97.2 0.095 2.1E-06 48.9 18.9 269 81-365 253-531 (533)
164 PF11841 DUF3361: Domain of un 97.2 0.011 2.3E-07 46.8 11.3 127 116-242 3-136 (160)
165 KOG2032 Uncharacterized conser 97.1 0.056 1.2E-06 50.4 17.3 153 254-420 262-416 (533)
166 PF04078 Rcd1: Cell differenti 97.1 0.0078 1.7E-07 51.6 11.1 187 9-199 8-222 (262)
167 KOG4151 Myosin assembly protei 97.1 0.017 3.7E-07 56.8 14.8 239 116-362 496-738 (748)
168 PF05004 IFRD: Interferon-rela 97.1 0.018 3.9E-07 52.2 14.1 185 4-194 51-256 (309)
169 KOG4151 Myosin assembly protei 97.1 0.02 4.4E-07 56.4 15.0 242 71-319 493-738 (748)
170 COG5116 RPN2 26S proteasome re 97.1 0.029 6.3E-07 53.1 15.2 134 170-326 520-654 (926)
171 KOG2062 26S proteasome regulat 97.1 0.088 1.9E-06 51.6 18.7 133 210-366 521-654 (929)
172 KOG4653 Uncharacterized conser 97.1 0.01 2.2E-07 58.7 12.8 224 42-276 730-960 (982)
173 KOG4653 Uncharacterized conser 97.0 0.017 3.7E-07 57.2 13.5 189 85-284 730-922 (982)
174 PF05004 IFRD: Interferon-rela 97.0 0.033 7.1E-07 50.5 14.5 191 129-322 48-257 (309)
175 PF11864 DUF3384: Domain of un 97.0 0.39 8.5E-06 46.5 27.0 253 9-280 42-330 (464)
176 KOG1020 Sister chromatid cohes 96.9 0.72 1.6E-05 49.3 24.9 382 5-423 864-1298(1692)
177 KOG2956 CLIP-associating prote 96.9 0.039 8.4E-07 51.0 13.9 147 125-280 330-477 (516)
178 KOG2956 CLIP-associating prote 96.9 0.058 1.2E-06 50.0 14.8 173 54-237 301-477 (516)
179 KOG0414 Chromosome condensatio 96.8 0.015 3.2E-07 59.7 11.4 161 39-220 919-1083(1251)
180 PF04078 Rcd1: Cell differenti 96.8 0.056 1.2E-06 46.5 13.1 141 14-156 68-220 (262)
181 KOG1243 Protein kinase [Genera 96.8 0.025 5.4E-07 55.0 12.2 192 163-370 327-520 (690)
182 KOG3036 Protein involved in ce 96.7 0.31 6.8E-06 41.3 17.9 187 9-197 37-249 (293)
183 PF12719 Cnd3: Nuclear condens 96.7 0.099 2.1E-06 47.4 15.2 170 82-262 26-209 (298)
184 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0034 7.3E-08 47.0 4.5 71 40-110 44-114 (119)
185 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0039 8.4E-08 46.6 4.7 73 250-322 43-115 (119)
186 PRK14707 hypothetical protein; 96.6 1.7 3.6E-05 48.5 26.8 358 41-419 165-529 (2710)
187 PRK14707 hypothetical protein; 96.6 1.7 3.8E-05 48.4 25.8 360 38-419 205-570 (2710)
188 COG5098 Chromosome condensatio 96.6 0.06 1.3E-06 52.3 13.3 180 166-368 892-1079(1128)
189 PF13764 E3_UbLigase_R4: E3 ub 96.5 0.75 1.6E-05 47.1 21.5 210 80-304 115-361 (802)
190 PF08045 CDC14: Cell division 96.5 0.12 2.6E-06 44.8 13.8 109 309-431 107-218 (257)
191 COG5656 SXM1 Importin, protein 96.5 0.24 5.2E-06 48.8 16.7 297 14-324 388-713 (970)
192 KOG3665 ZYG-1-like serine/thre 96.5 0.46 9.9E-06 48.3 19.5 194 105-317 494-692 (699)
193 PF05918 API5: Apoptosis inhib 96.4 1.1 2.3E-05 43.7 21.8 167 8-194 34-206 (556)
194 PF11701 UNC45-central: Myosin 96.3 0.02 4.3E-07 46.2 7.6 144 211-362 6-156 (157)
195 PF11864 DUF3384: Domain of un 96.3 1.2 2.5E-05 43.3 23.1 287 10-322 4-330 (464)
196 KOG2025 Chromosome condensatio 96.2 0.24 5.2E-06 48.5 15.2 105 38-149 84-188 (892)
197 PF06025 DUF913: Domain of Unk 96.2 0.45 9.7E-06 44.5 16.8 188 15-203 3-240 (379)
198 COG5218 YCG1 Chromosome conden 96.2 0.75 1.6E-05 44.2 17.8 109 161-275 86-194 (885)
199 KOG1243 Protein kinase [Genera 96.1 0.18 3.9E-06 49.4 14.0 228 33-280 287-515 (690)
200 KOG1525 Sister chromatid cohes 96.1 1.7 3.8E-05 46.7 22.0 148 208-366 259-406 (1266)
201 KOG1820 Microtubule-associated 96.0 0.18 3.9E-06 51.4 14.1 189 83-280 254-443 (815)
202 PF08045 CDC14: Cell division 96.0 0.14 3E-06 44.5 11.5 101 10-111 105-207 (257)
203 KOG0413 Uncharacterized conser 96.0 0.92 2E-05 46.3 18.1 93 10-109 591-683 (1529)
204 PF11701 UNC45-central: Myosin 95.9 0.053 1.2E-06 43.7 8.3 146 251-416 4-155 (157)
205 PF07814 WAPL: Wings apart-lik 95.9 0.46 1E-05 44.3 15.5 275 41-324 23-357 (361)
206 PF14500 MMS19_N: Dos2-interac 95.9 0.72 1.6E-05 40.7 15.7 219 43-280 3-237 (262)
207 PF02985 HEAT: HEAT repeat; I 95.9 0.012 2.7E-07 32.4 3.1 29 40-69 1-29 (31)
208 PF02985 HEAT: HEAT repeat; I 95.9 0.017 3.6E-07 31.9 3.6 29 167-195 1-29 (31)
209 KOG1820 Microtubule-associated 95.9 0.15 3.2E-06 52.0 12.7 191 168-368 255-446 (815)
210 PLN03076 ARF guanine nucleotid 95.8 1.5 3.2E-05 49.3 20.6 265 7-280 1148-1489(1780)
211 KOG1949 Uncharacterized conser 95.7 2.3 4.9E-05 42.0 19.1 190 211-425 177-376 (1005)
212 PF14668 RICTOR_V: Rapamycin-i 95.6 0.13 2.8E-06 35.0 7.8 66 268-336 4-70 (73)
213 KOG3665 ZYG-1-like serine/thre 95.6 2 4.3E-05 43.8 19.5 175 231-418 494-695 (699)
214 PF14500 MMS19_N: Dos2-interac 95.6 1.3 2.9E-05 39.0 16.2 219 3-238 6-238 (262)
215 KOG1993 Nuclear transport rece 95.5 3.2 7E-05 41.6 19.5 303 10-326 501-816 (978)
216 PF11865 DUF3385: Domain of un 95.4 0.18 4E-06 40.7 9.6 147 39-194 10-156 (160)
217 KOG1566 Conserved protein Mo25 95.4 1.8 4E-05 38.3 15.8 203 76-280 73-286 (342)
218 PF12530 DUF3730: Protein of u 95.3 1.2 2.6E-05 38.7 15.0 201 85-307 3-217 (234)
219 PF07814 WAPL: Wings apart-lik 95.3 1.4 3E-05 41.2 16.1 274 84-367 23-357 (361)
220 PF03378 CAS_CSE1: CAS/CSE pro 95.3 0.57 1.2E-05 44.7 13.7 223 94-328 42-278 (435)
221 PF06371 Drf_GBD: Diaphanous G 95.2 0.031 6.6E-07 46.8 4.7 95 15-110 83-186 (187)
222 COG5218 YCG1 Chromosome conden 95.2 3.2 6.9E-05 40.2 19.7 108 38-155 90-197 (885)
223 PF13251 DUF4042: Domain of un 95.2 0.63 1.4E-05 38.3 11.9 142 56-197 2-176 (182)
224 KOG1822 Uncharacterized conser 95.1 6.9 0.00015 43.5 24.2 274 84-365 878-1189(2067)
225 PF12530 DUF3730: Protein of u 95.1 2.1 4.4E-05 37.3 16.0 141 41-196 2-152 (234)
226 COG5656 SXM1 Importin, protein 95.0 4.4 9.5E-05 40.5 22.9 282 81-371 407-717 (970)
227 KOG1566 Conserved protein Mo25 95.0 2.1 4.4E-05 38.0 14.8 203 118-324 73-288 (342)
228 PF14668 RICTOR_V: Rapamycin-i 95.0 0.15 3.2E-06 34.7 6.4 67 13-82 4-70 (73)
229 KOG1992 Nuclear export recepto 94.9 4.8 0.0001 40.7 25.8 390 9-425 52-532 (960)
230 KOG1949 Uncharacterized conser 94.9 0.63 1.4E-05 45.7 12.8 147 40-194 175-330 (1005)
231 cd03567 VHS_GGA VHS domain fam 94.8 0.25 5.4E-06 38.7 8.4 93 294-393 39-137 (139)
232 COG5116 RPN2 26S proteasome re 94.8 0.25 5.4E-06 47.1 9.6 152 46-221 523-675 (926)
233 PF13764 E3_UbLigase_R4: E3 ub 94.8 5.1 0.00011 41.3 19.4 216 35-256 113-382 (802)
234 PF08506 Cse1: Cse1; InterPro 94.7 2.2 4.8E-05 39.9 15.8 214 181-415 111-370 (370)
235 PF11707 Npa1: Ribosome 60S bi 94.7 2.8 6.1E-05 38.6 16.5 157 210-366 58-238 (330)
236 PLN03076 ARF guanine nucleotid 94.7 2.2 4.8E-05 47.9 18.0 278 87-368 1142-1492(1780)
237 KOG2137 Protein kinase [Signal 94.7 0.78 1.7E-05 45.3 12.9 208 142-367 290-498 (700)
238 PF11707 Npa1: Ribosome 60S bi 94.7 2.3 5.1E-05 39.2 15.8 159 252-420 58-237 (330)
239 PF13251 DUF4042: Domain of un 94.6 0.87 1.9E-05 37.5 11.2 143 223-366 1-175 (182)
240 KOG2933 Uncharacterized conser 94.5 0.21 4.5E-06 43.9 7.9 146 83-237 89-234 (334)
241 PF08506 Cse1: Cse1; InterPro 94.5 1.2 2.6E-05 41.6 13.4 149 118-275 204-370 (370)
242 PF04063 DUF383: Domain of unk 94.5 0.36 7.7E-06 40.2 8.9 110 4-116 3-137 (192)
243 KOG2999 Regulator of Rac1, req 94.4 1.1 2.4E-05 42.7 12.7 152 3-158 90-246 (713)
244 PF06025 DUF913: Domain of Unk 94.4 1.7 3.8E-05 40.7 14.2 119 16-135 80-207 (379)
245 KOG2933 Uncharacterized conser 94.4 0.27 5.9E-06 43.2 8.2 146 165-324 87-236 (334)
246 PF01603 B56: Protein phosphat 94.3 0.5 1.1E-05 44.9 10.8 226 1-240 138-373 (409)
247 PF01603 B56: Protein phosphat 94.3 2 4.3E-05 40.9 14.7 261 14-288 108-378 (409)
248 KOG2137 Protein kinase [Signal 94.1 1.3 2.9E-05 43.8 13.1 230 9-262 286-520 (700)
249 COG5098 Chromosome condensatio 94.1 1.1 2.3E-05 44.2 12.3 144 40-198 893-1040(1128)
250 KOG0413 Uncharacterized conser 94.0 4.9 0.00011 41.4 16.9 129 95-236 944-1072(1529)
251 cd03568 VHS_STAM VHS domain fa 94.0 0.37 7.9E-06 38.1 7.7 75 294-368 38-113 (144)
252 KOG0891 DNA-dependent protein 94.0 0.96 2.1E-05 51.7 13.4 268 5-281 490-764 (2341)
253 cd03568 VHS_STAM VHS domain fa 94.0 0.33 7.2E-06 38.3 7.5 73 337-421 38-111 (144)
254 cd03569 VHS_Hrs_Vps27p VHS dom 93.9 0.54 1.2E-05 37.1 8.5 75 294-368 42-117 (142)
255 PF10363 DUF2435: Protein of u 93.5 0.32 6.9E-06 35.0 6.0 84 210-304 5-88 (92)
256 KOG2611 Neurochondrin/leucine- 93.5 7 0.00015 37.0 16.1 191 86-280 15-225 (698)
257 cd03569 VHS_Hrs_Vps27p VHS dom 93.4 0.51 1.1E-05 37.2 7.6 73 337-421 42-115 (142)
258 PF04063 DUF383: Domain of unk 93.4 0.83 1.8E-05 38.1 9.1 105 217-323 4-133 (192)
259 cd03567 VHS_GGA VHS domain fam 93.2 0.6 1.3E-05 36.6 7.6 72 337-420 39-116 (139)
260 PF12231 Rif1_N: Rap1-interact 93.2 7.6 0.00016 36.5 18.2 307 5-322 2-352 (372)
261 PF11865 DUF3385: Domain of un 93.1 0.92 2E-05 36.7 8.8 37 250-286 10-46 (160)
262 PF14225 MOR2-PAG1_C: Cell mor 93.1 5.9 0.00013 34.9 15.6 213 2-236 13-253 (262)
263 PF08167 RIX1: rRNA processing 92.9 0.6 1.3E-05 38.0 7.6 114 82-199 25-147 (165)
264 PF12031 DUF3518: Domain of un 92.9 0.57 1.2E-05 39.8 7.4 79 56-135 140-227 (257)
265 COG5209 RCD1 Uncharacterized p 92.7 0.85 1.8E-05 38.2 8.1 139 15-155 119-269 (315)
266 PF12830 Nipped-B_C: Sister ch 92.6 2.4 5.2E-05 35.3 11.0 140 3-155 15-168 (187)
267 KOG1525 Sister chromatid cohes 92.6 18 0.00039 39.4 20.1 127 292-421 258-406 (1266)
268 PF06371 Drf_GBD: Diaphanous G 92.6 0.51 1.1E-05 39.4 7.2 109 41-153 68-186 (187)
269 smart00638 LPD_N Lipoprotein N 92.4 7.1 0.00015 39.3 16.2 135 166-320 393-543 (574)
270 PF03378 CAS_CSE1: CAS/CSE pro 92.4 4.1 8.9E-05 39.0 13.5 274 40-322 27-324 (435)
271 cd03572 ENTH_epsin_related ENT 92.4 2.4 5.1E-05 32.3 9.6 99 306-422 14-121 (122)
272 KOG1993 Nuclear transport rece 92.3 14 0.00031 37.4 19.3 315 3-329 533-871 (978)
273 cd03561 VHS VHS domain family; 91.8 1.1 2.4E-05 35.0 7.6 72 337-420 38-112 (133)
274 PF14726 RTTN_N: Rotatin, an a 91.8 1.5 3.2E-05 31.9 7.5 70 334-417 28-97 (98)
275 smart00638 LPD_N Lipoprotein N 91.5 15 0.00031 37.1 17.2 134 126-278 395-543 (574)
276 PF10363 DUF2435: Protein of u 91.2 0.85 1.8E-05 32.8 5.8 74 252-328 5-78 (92)
277 KOG1848 Uncharacterized conser 91.1 18 0.00039 39.1 17.1 62 350-419 1070-1131(1610)
278 smart00288 VHS Domain present 91.1 1.8 3.8E-05 33.8 8.0 74 294-367 38-113 (133)
279 PF01347 Vitellogenin_N: Lipop 91.1 5.4 0.00012 40.5 13.8 164 83-274 432-616 (618)
280 KOG1832 HIV-1 Vpr-binding prot 91.0 2.8 6E-05 42.7 10.8 311 7-325 364-776 (1516)
281 KOG1992 Nuclear export recepto 90.9 13 0.00028 37.8 15.2 306 36-346 358-705 (960)
282 PF01347 Vitellogenin_N: Lipop 90.9 12 0.00026 38.0 16.1 198 83-315 396-615 (618)
283 KOG2611 Neurochondrin/leucine- 90.5 16 0.00035 34.7 16.4 186 5-194 20-224 (698)
284 smart00288 VHS Domain present 89.9 1.6 3.5E-05 34.0 6.9 73 337-421 38-112 (133)
285 PF08167 RIX1: rRNA processing 89.8 2 4.2E-05 35.0 7.6 112 208-323 25-144 (165)
286 cd03561 VHS VHS domain family; 89.7 2.7 5.8E-05 32.8 8.0 76 294-369 38-116 (133)
287 KOG1822 Uncharacterized conser 89.4 27 0.00058 39.3 17.1 232 40-279 877-1126(2067)
288 KOG2229 Protein required for a 89.1 1.9 4.2E-05 40.7 7.7 141 250-413 16-159 (616)
289 PF08324 PUL: PUL domain; Int 88.8 7.1 0.00015 34.7 11.2 156 42-200 66-236 (268)
290 PF00790 VHS: VHS domain; Int 88.6 2.3 4.9E-05 33.6 7.0 74 294-367 43-120 (140)
291 KOG2999 Regulator of Rac1, req 88.6 25 0.00054 34.2 20.3 166 167-334 84-254 (713)
292 PF12074 DUF3554: Domain of un 88.5 6.5 0.00014 36.5 11.1 217 36-261 19-255 (339)
293 PF04388 Hamartin: Hamartin pr 88.3 7.6 0.00016 39.6 12.0 152 2-175 10-161 (668)
294 PF12231 Rif1_N: Rap1-interact 88.0 24 0.00052 33.2 21.7 218 138-365 59-303 (372)
295 PF00790 VHS: VHS domain; Int 87.6 2.6 5.6E-05 33.2 6.7 72 337-420 43-118 (140)
296 KOG0891 DNA-dependent protein 87.4 20 0.00043 41.8 15.4 269 44-322 486-763 (2341)
297 PF12031 DUF3518: Domain of un 87.2 4.4 9.6E-05 34.7 8.0 84 223-307 139-230 (257)
298 cd00197 VHS_ENTH_ANTH VHS, ENT 87.1 3.5 7.6E-05 31.1 7.0 71 337-419 38-114 (115)
299 PF14726 RTTN_N: Rotatin, an a 86.2 9.2 0.0002 27.8 8.3 90 11-103 2-92 (98)
300 COG5209 RCD1 Uncharacterized p 86.0 4.8 0.00011 33.9 7.5 136 226-364 118-267 (315)
301 KOG1788 Uncharacterized conser 85.9 52 0.0011 35.0 17.5 394 4-420 475-937 (2799)
302 cd03565 VHS_Tom1 VHS domain fa 85.7 6.9 0.00015 30.8 8.1 74 294-367 39-117 (141)
303 PF12074 DUF3554: Domain of un 85.1 32 0.00069 31.9 14.7 214 99-326 4-239 (339)
304 PF14225 MOR2-PAG1_C: Cell mor 84.7 28 0.0006 30.8 16.8 177 83-280 65-254 (262)
305 cd03572 ENTH_epsin_related ENT 84.6 15 0.00033 28.0 9.1 87 274-365 24-119 (122)
306 PF13001 Ecm29: Proteasome sta 84.6 35 0.00077 33.6 14.2 222 177-424 248-492 (501)
307 PF12830 Nipped-B_C: Sister ch 84.4 23 0.00049 29.6 13.1 71 40-116 9-79 (187)
308 KOG2199 Signal transducing ada 84.4 9.1 0.0002 35.2 9.0 73 293-365 45-118 (462)
309 PF13001 Ecm29: Proteasome sta 84.3 11 0.00023 37.2 10.5 175 7-196 248-444 (501)
310 cd03565 VHS_Tom1 VHS domain fa 84.1 7.8 0.00017 30.5 7.8 72 337-420 39-115 (141)
311 PF10521 DUF2454: Protein of u 84.0 29 0.00062 31.2 12.4 72 83-154 120-203 (282)
312 PF10521 DUF2454: Protein of u 83.9 13 0.00029 33.3 10.3 71 39-110 119-202 (282)
313 PF04869 Uso1_p115_head: Uso1 81.9 41 0.00088 30.7 12.5 169 41-239 36-233 (312)
314 KOG4464 Signaling protein RIC- 81.8 23 0.00049 33.0 10.5 135 127-261 48-198 (532)
315 PF10274 ParcG: Parkin co-regu 81.8 16 0.00034 30.1 8.8 77 164-241 36-113 (183)
316 PF10274 ParcG: Parkin co-regu 81.6 25 0.00054 29.0 9.9 71 250-322 38-109 (183)
317 PF12054 DUF3535: Domain of un 81.2 17 0.00037 35.0 10.4 81 10-95 101-181 (441)
318 PF04869 Uso1_p115_head: Uso1 81.2 43 0.00094 30.5 12.4 158 166-323 34-232 (312)
319 KOG1848 Uncharacterized conser 80.6 96 0.0021 34.1 16.4 96 94-194 854-957 (1610)
320 PF04388 Hamartin: Hamartin pr 80.4 20 0.00042 36.7 10.9 64 221-284 81-144 (668)
321 KOG1410 Nuclear transport rece 80.3 68 0.0015 32.2 18.2 282 6-303 16-355 (1082)
322 KOG0889 Histone acetyltransfer 79.9 84 0.0018 38.2 16.2 161 162-323 1122-1307(3550)
323 KOG2005 26S proteasome regulat 79.6 72 0.0016 32.0 15.3 69 251-327 641-709 (878)
324 cd08050 TAF6 TATA Binding Prot 79.3 16 0.00034 33.9 9.2 112 165-278 209-338 (343)
325 KOG1988 Uncharacterized conser 79.2 74 0.0016 32.9 13.9 247 3-280 31-281 (970)
326 PF06685 DUF1186: Protein of u 78.7 45 0.00097 29.2 12.9 95 80-186 71-174 (249)
327 KOG0392 SNF2 family DNA-depend 78.2 13 0.00028 39.8 8.8 234 38-280 76-325 (1549)
328 cd08050 TAF6 TATA Binding Prot 78.1 28 0.00061 32.3 10.5 110 126-236 212-339 (343)
329 PF12726 SEN1_N: SEN1 N termin 77.7 42 0.0009 35.0 12.7 136 5-155 450-586 (727)
330 PF08324 PUL: PUL domain; Int 77.4 8.7 0.00019 34.2 6.8 111 7-120 121-240 (268)
331 PF08767 CRM1_C: CRM1 C termin 76.9 50 0.0011 30.3 11.7 186 224-421 43-245 (319)
332 KOG2199 Signal transducing ada 76.8 7.3 0.00016 35.7 5.9 74 336-421 45-119 (462)
333 KOG2149 Uncharacterized conser 76.6 28 0.00061 32.3 9.7 114 167-282 59-172 (393)
334 KOG0803 Predicted E3 ubiquitin 76.4 1.1E+02 0.0024 33.9 15.3 194 1-198 46-266 (1312)
335 KOG1087 Cytosolic sorting prot 75.9 11 0.00023 36.3 7.1 72 337-420 39-112 (470)
336 KOG1832 HIV-1 Vpr-binding prot 75.3 20 0.00043 37.0 8.9 159 30-198 592-776 (1516)
337 KOG0392 SNF2 family DNA-depend 74.5 39 0.00085 36.5 11.0 239 165-426 76-331 (1549)
338 PF12783 Sec7_N: Guanine nucle 73.3 42 0.00091 27.3 9.4 107 9-119 35-154 (168)
339 KOG2073 SAP family cell cycle 73.2 1.3E+02 0.0027 31.7 17.4 179 165-348 189-377 (838)
340 KOG2149 Uncharacterized conser 72.6 26 0.00057 32.5 8.4 114 251-367 59-172 (393)
341 PF06685 DUF1186: Protein of u 72.4 67 0.0015 28.1 12.9 73 38-122 72-153 (249)
342 PF04821 TIMELESS: Timeless pr 71.5 74 0.0016 28.3 13.1 171 165-366 12-209 (266)
343 KOG0301 Phospholipase A2-activ 70.5 1.2E+02 0.0027 30.4 15.9 164 46-219 551-727 (745)
344 KOG1410 Nuclear transport rece 70.5 1.3E+02 0.0027 30.5 18.1 315 84-422 7-336 (1082)
345 KOG2213 Apoptosis inhibitor 5/ 70.5 94 0.002 29.0 17.7 231 95-346 37-289 (460)
346 KOG0301 Phospholipase A2-activ 70.1 70 0.0015 32.0 11.0 139 10-156 558-706 (745)
347 PF12054 DUF3535: Domain of un 70.1 31 0.00067 33.3 8.9 307 96-416 101-439 (441)
348 PF09324 DUF1981: Domain of un 70.1 8.5 0.00018 27.3 3.9 70 122-191 15-84 (86)
349 KOG2011 Sister chromatid cohes 69.7 43 0.00092 35.7 10.1 137 48-193 296-433 (1048)
350 PF12463 DUF3689: Protein of u 69.6 33 0.00071 31.0 8.3 80 291-370 93-178 (303)
351 KOG2005 26S proteasome regulat 69.3 1.3E+02 0.0029 30.3 14.3 73 38-113 47-127 (878)
352 KOG2549 Transcription initiati 69.1 90 0.0019 30.6 11.3 140 86-236 211-369 (576)
353 PF08216 CTNNBL: Catenin-beta- 69.1 6.6 0.00014 29.0 3.2 43 57-100 63-105 (108)
354 PF08389 Xpo1: Exportin 1-like 68.6 22 0.00048 27.9 6.7 141 55-232 3-148 (148)
355 KOG2011 Sister chromatid cohes 68.4 85 0.0018 33.6 11.9 138 260-420 297-435 (1048)
356 PF01417 ENTH: ENTH domain; I 68.3 24 0.00052 27.0 6.5 99 305-422 15-123 (125)
357 PF09758 FPL: Uncharacterised 68.1 25 0.00054 27.9 6.4 124 71-194 15-148 (149)
358 PF04499 SAPS: SIT4 phosphatas 67.9 28 0.00061 33.9 8.1 83 286-368 55-151 (475)
359 cd00197 VHS_ENTH_ANTH VHS, ENT 66.9 27 0.00059 26.2 6.5 70 294-363 38-113 (115)
360 KOG2549 Transcription initiati 66.3 56 0.0012 31.9 9.4 136 5-153 216-369 (576)
361 PF08711 Med26: TFIIS helical 66.1 19 0.0004 22.6 4.6 36 384-419 13-49 (53)
362 PF12463 DUF3689: Protein of u 65.2 1.1E+02 0.0023 27.8 11.3 78 165-242 94-178 (303)
363 KOG2676 Uncharacterized conser 63.5 10 0.00022 34.5 3.8 63 59-121 375-439 (478)
364 KOG2038 CAATT-binding transcri 61.9 2E+02 0.0043 29.7 16.8 89 10-110 318-408 (988)
365 COG5537 IRR1 Cohesin [Cell div 61.7 1.8E+02 0.0038 29.1 13.6 102 174-280 283-386 (740)
366 smart00802 UME Domain in UVSB 61.1 45 0.00097 24.8 6.4 80 250-334 11-95 (107)
367 COG5537 IRR1 Cohesin [Cell div 60.7 1.5E+02 0.0032 29.6 11.1 134 94-237 287-422 (740)
368 smart00509 TFS2N Domain in the 60.4 41 0.00089 23.1 5.7 36 384-419 35-70 (75)
369 PF12726 SEN1_N: SEN1 N termin 60.2 2.2E+02 0.0049 29.7 26.2 114 294-422 442-555 (727)
370 KOG2021 Nuclear mRNA export fa 60.0 2.1E+02 0.0046 29.4 12.5 294 9-309 264-592 (980)
371 KOG2073 SAP family cell cycle 59.5 2.4E+02 0.0051 29.8 14.1 39 117-155 183-221 (838)
372 PF09758 FPL: Uncharacterised 59.4 39 0.00086 26.8 6.1 125 196-320 14-147 (149)
373 PF04499 SAPS: SIT4 phosphatas 57.7 1.9E+02 0.0042 28.3 12.0 74 327-400 53-127 (475)
374 PF08767 CRM1_C: CRM1 C termin 56.9 1.6E+02 0.0035 27.0 12.2 178 141-321 43-243 (319)
375 KOG4524 Uncharacterized conser 56.6 43 0.00094 35.0 7.3 89 129-218 808-899 (1014)
376 PF04064 DUF384: Domain of unk 56.3 52 0.0011 21.2 5.8 43 383-425 11-54 (58)
377 cd00183 TFIIS_I N-terminal dom 55.9 60 0.0013 22.3 6.0 36 384-419 37-72 (76)
378 PF11229 DUF3028: Protein of u 55.2 2.1E+02 0.0046 27.9 14.9 228 125-364 98-352 (589)
379 PF13925 Katanin_con80: con80 54.3 1.1E+02 0.0024 24.8 8.2 74 123-197 27-100 (164)
380 KOG2085 Serine/threonine prote 53.9 1.4E+02 0.003 28.2 9.3 85 71-156 166-250 (457)
381 PF08064 UME: UME (NUC010) dom 53.9 69 0.0015 23.8 6.4 79 250-333 11-94 (107)
382 PF11791 Aconitase_B_N: Aconit 52.9 42 0.00092 26.5 5.2 45 98-154 79-123 (154)
383 KOG0803 Predicted E3 ubiquitin 52.8 2.8E+02 0.006 31.0 12.8 107 210-322 43-153 (1312)
384 KOG4524 Uncharacterized conser 51.5 3.3E+02 0.0071 29.0 17.6 94 250-346 803-899 (1014)
385 PF09324 DUF1981: Domain of un 51.3 75 0.0016 22.4 6.0 69 160-233 11-84 (86)
386 KOG4464 Signaling protein RIC- 50.3 2.3E+02 0.005 26.9 20.2 93 41-134 47-149 (532)
387 KOG1924 RhoA GTPase effector D 49.6 3.2E+02 0.0069 28.3 16.2 152 223-415 207-359 (1102)
388 PF08216 CTNNBL: Catenin-beta- 49.5 20 0.00043 26.5 2.8 42 15-59 65-106 (108)
389 PF07539 DRIM: Down-regulated 49.4 1.2E+02 0.0026 23.9 7.4 84 80-176 15-98 (141)
390 PF12765 Cohesin_HEAT: HEAT re 48.8 12 0.00027 22.2 1.4 25 208-232 18-42 (42)
391 PF14663 RasGEF_N_2: Rapamycin 47.8 55 0.0012 24.7 5.2 31 83-113 9-39 (115)
392 PF06012 DUF908: Domain of Unk 47.5 92 0.002 28.7 7.6 64 55-119 237-305 (329)
393 KOG2213 Apoptosis inhibitor 5/ 47.4 2.5E+02 0.0054 26.4 11.3 53 223-281 39-91 (460)
394 KOG1087 Cytosolic sorting prot 45.1 59 0.0013 31.5 6.0 73 294-366 39-113 (470)
395 PF12397 U3snoRNP10: U3 small 44.6 88 0.0019 23.7 6.0 68 83-156 7-76 (121)
396 PF06012 DUF908: Domain of Unk 43.7 1.2E+02 0.0026 28.0 7.8 48 29-76 253-304 (329)
397 PF08713 DNA_alkylation: DNA a 42.9 2E+02 0.0044 24.2 12.3 140 43-207 55-196 (213)
398 PLN03205 ATR interacting prote 42.8 2.3E+02 0.0049 26.7 8.9 177 40-217 324-544 (652)
399 PF07923 N1221: N1221-like pro 42.7 81 0.0018 28.5 6.4 109 292-400 59-200 (293)
400 KOG0889 Histone acetyltransfer 42.3 6E+02 0.013 31.8 13.8 78 223-301 1248-1327(3550)
401 PF04510 DUF577: Family of unk 41.5 2E+02 0.0043 23.6 11.4 155 252-420 5-164 (174)
402 KOG1086 Cytosolic sorting prot 41.2 1.4E+02 0.0029 28.3 7.3 30 394-423 176-205 (594)
403 PF11791 Aconitase_B_N: Aconit 40.7 1.9E+02 0.004 23.1 7.7 100 168-280 24-123 (154)
404 PF08713 DNA_alkylation: DNA a 40.6 48 0.001 28.1 4.5 77 208-292 120-196 (213)
405 PF14663 RasGEF_N_2: Rapamycin 39.2 60 0.0013 24.5 4.2 39 40-80 9-47 (115)
406 smart00567 EZ_HEAT E-Z type HE 39.0 38 0.00082 18.0 2.3 28 11-50 2-29 (30)
407 KOG2140 Uncharacterized conser 38.9 2.2E+02 0.0048 27.9 8.5 106 293-420 238-343 (739)
408 PF08389 Xpo1: Exportin 1-like 38.9 38 0.00082 26.5 3.4 64 39-106 82-148 (148)
409 PF07571 DUF1546: Protein of u 38.0 1.1E+02 0.0023 22.0 5.1 59 8-68 18-77 (92)
410 PF11935 DUF3453: Domain of un 37.6 1.4E+02 0.0031 26.0 6.9 72 344-420 1-72 (239)
411 PF08064 UME: UME (NUC010) dom 37.2 99 0.0021 22.9 5.1 69 166-239 11-85 (107)
412 PF12397 U3snoRNP10: U3 small 37.2 1.8E+02 0.0039 21.9 9.3 68 40-113 7-76 (121)
413 cd03562 CID CID (CTD-Interacti 36.0 1.6E+02 0.0035 21.9 6.3 90 137-235 17-106 (114)
414 KOG2022 Nuclear transport rece 33.5 6.1E+02 0.013 26.9 18.9 134 182-326 483-623 (982)
415 KOG2152 Sister chromatid cohes 32.8 5.8E+02 0.012 26.4 10.5 64 112-176 363-426 (865)
416 KOG2153 Protein involved in th 32.5 5.5E+02 0.012 26.1 11.3 68 207-278 323-390 (704)
417 COG5095 TAF6 Transcription ini 32.1 3.9E+02 0.0084 24.2 11.9 135 174-320 206-357 (450)
418 PF03130 HEAT_PBS: PBS lyase H 32.0 50 0.0011 17.2 2.0 26 141-176 1-26 (27)
419 smart00802 UME Domain in UVSB 31.2 2.2E+02 0.0048 21.1 6.3 68 39-111 11-83 (107)
420 KOG2256 Predicted protein invo 31.1 5.8E+02 0.013 25.9 11.0 29 83-111 283-311 (661)
421 PF07923 N1221: N1221-like pro 30.9 75 0.0016 28.7 4.2 57 35-92 56-126 (293)
422 PF14631 FancD2: Fanconi anaem 30.4 1.7E+02 0.0037 33.2 7.4 136 39-183 431-571 (1426)
423 KOG1988 Uncharacterized conser 30.0 6.9E+02 0.015 26.4 12.3 249 44-323 29-282 (970)
424 PF14666 RICTOR_M: Rapamycin-i 29.4 3.8E+02 0.0081 23.2 12.8 132 9-154 77-225 (226)
425 KOG4231 Intracellular membrane 28.9 1.1E+02 0.0025 29.6 5.0 69 210-279 330-398 (763)
426 PF04821 TIMELESS: Timeless pr 28.9 4.2E+02 0.009 23.6 15.8 37 202-238 172-209 (266)
427 COG5095 TAF6 Transcription ini 28.9 4.4E+02 0.0095 23.8 9.4 136 91-237 207-359 (450)
428 KOG2676 Uncharacterized conser 28.0 79 0.0017 29.0 3.7 60 228-288 376-437 (478)
429 PF06367 Drf_FH3: Diaphanous F 27.6 3.6E+02 0.0078 22.4 7.8 73 337-416 22-97 (197)
430 PF12783 Sec7_N: Guanine nucle 27.3 3.3E+02 0.0072 22.0 10.7 99 308-420 37-146 (168)
431 PF05997 Nop52: Nucleolar prot 27.2 99 0.0021 26.5 4.1 66 2-69 6-72 (217)
432 COG5110 RPN1 26S proteasome re 26.5 6.6E+02 0.014 25.1 17.2 265 33-316 41-341 (881)
433 cd06561 AlkD_like A new struct 26.2 1.9E+02 0.0042 24.0 5.8 73 211-290 108-180 (197)
434 PF01365 RYDR_ITPR: RIH domain 26.0 1.8E+02 0.0039 24.6 5.6 101 74-177 35-153 (207)
435 PF08623 TIP120: TATA-binding 25.3 3.4E+02 0.0073 22.2 6.5 94 9-109 40-145 (169)
436 PF14666 RICTOR_M: Rapamycin-i 25.1 4.5E+02 0.0098 22.7 12.8 146 37-194 49-224 (226)
437 PF08623 TIP120: TATA-binding 25.0 2.8E+02 0.0061 22.7 6.0 76 138-217 40-115 (169)
438 KOG2038 CAATT-binding transcri 24.7 8.2E+02 0.018 25.6 24.0 103 82-194 304-408 (988)
439 COG4370 Uncharacterized protei 24.7 34 0.00073 30.7 0.8 15 439-453 58-72 (412)
440 PF04510 DUF577: Family of unk 24.6 4E+02 0.0086 21.9 9.6 152 209-366 4-165 (174)
441 PF10257 RAI16-like: Retinoic 23.3 6.2E+02 0.013 23.7 11.2 130 202-334 3-169 (353)
442 KOG1851 Uncharacterized conser 23.2 1E+03 0.022 27.4 11.1 149 41-195 1528-1678(1710)
443 PF01365 RYDR_ITPR: RIH domain 23.0 1.6E+02 0.0036 24.8 4.7 100 33-135 37-153 (207)
444 PRK09169 hypothetical protein; 22.9 1.4E+03 0.03 27.7 25.1 14 179-192 329-342 (2316)
445 PF03542 Tuberin: Tuberin; In 22.2 6.6E+02 0.014 23.6 10.5 144 83-239 142-305 (356)
446 PF08454 RIH_assoc: RyR and IP 21.9 1.8E+02 0.004 21.7 4.2 40 221-260 66-106 (109)
447 TIGR03504 FimV_Cterm FimV C-te 21.7 1.7E+02 0.0036 17.6 3.2 28 391-418 17-44 (44)
448 KOG2312 Predicted transcriptio 21.1 17 0.00038 36.0 -1.7 122 220-345 47-170 (847)
449 PF07539 DRIM: Down-regulated 20.6 1.9E+02 0.0041 22.8 4.2 37 384-420 10-46 (141)
450 PF09450 DUF2019: Domain of un 20.6 15 0.00033 27.0 -1.7 24 1-24 52-75 (106)
451 PF14868 DUF4487: Domain of un 20.6 7.9E+02 0.017 24.8 9.2 60 138-197 493-554 (559)
452 PF14631 FancD2: Fanconi anaem 20.2 4.2E+02 0.009 30.3 8.0 128 135-269 445-572 (1426)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-63 Score=452.49 Aligned_cols=442 Identities=71% Similarity=1.105 Sum_probs=412.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.|++++.+..+...++++++.+..++++.++..|++|.++.+|...+++.++..|+|+|.|++.++.+..+.+++.
T Consensus 72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a 151 (514)
T KOG0166|consen 72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA 151 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence 45678999999999999999999998889999999999999999999877669999999999999999999999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (454)
|+++.++.++.+++..+++.|+|+|+|++.+++.+|+.++..|++.+|+.++.......+.+.+.|+|+|||++. |.+.
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999966555689999999999999998 7888
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
+.....++|.|..++.+.|+++...++|++++++.+.++.++.+++.|+++.|+.+|.+.++.++..|+++++|++.+++
T Consensus 232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
.+.+.+++.|.++.|..++...+...+|++|||+++|++.++.++++.+++.|++|.|+.+++..+.++|++|+||++|+
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL 391 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 99999999999999999999553777999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 400 (454)
+..+++++..++.+.|+++.|..+|...|.++...++.+|.++++.++...... . +.+..++++.||+++++.|+
T Consensus 392 ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ 466 (514)
T KOG0166|consen 392 TSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQ 466 (514)
T ss_pred cccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhh
Confidence 999999999999999999999999999999999999999999999999875321 1 67999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCcCCCccccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897 401 SHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVPSGGFNF 453 (454)
Q Consensus 401 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+|+|++++.+|.++|++||..|++++..+ ..++ +|.|... .|+|||||
T Consensus 467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~-~~~~-~~~~~~~---~~~~~f~f 514 (514)
T KOG0166|consen 467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQ-PTTS-QFTFQVQ---APDGGFNF 514 (514)
T ss_pred ccccHHHHHHHHHHHHHhcCCCccccccc-cccc-ccccCCC---CCCCCCCC
Confidence 99999999999999999999886665444 2222 5555444 89999998
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.8e-60 Score=397.73 Aligned_cols=443 Identities=58% Similarity=0.905 Sum_probs=405.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.|.|+|-+.+..|...++++++.+..++++.+++.|++|.++++|.......++..|+|+|.|++++.....+.+++.|
T Consensus 78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~ 157 (526)
T COG5064 78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAG 157 (526)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCC
Confidence 34789999999999999999999998999999999999999999995544368899999999999999999999999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGK-PQPP 160 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (454)
++|.++++|.+++.+++++++|+|+|++.+++.+|+.++..|.+++++.++..+ .+..+.+.+.|+|+|||+.. |.+.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999543 35689999999999999998 7777
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.......+|.|.+++.+.|+++...|+|++++++....+.++.+++.|+...|+.+|.+++..++..|++.++|++.+++
T Consensus 238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
.+.+.+++.|.++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|.|+.++...+..++++||||+.|.
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred cceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897 321 TSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 398 (454)
Q Consensus 321 ~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 398 (454)
.+++ -++.+.++.+.|+++.|.++|...+.++.+.++.++.++++.++.++.. ++...|.|...+++.|+++.+..
T Consensus 397 tsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~--~~~nin~ya~~vE~Aggmd~I~~ 474 (526)
T COG5064 397 TSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR--YGKNINIYAVYVEKAGGMDAIHG 474 (526)
T ss_pred hccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh--ccCCccHHHHHHHhcccHHHHHH
Confidence 8876 4688999999999999999999999999999999999999998876543 22277889999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCCcc--ccCCCCCCCCCCCCCCCCCCCCCCcc
Q 012897 399 LQSHDNNEIYEKAVKILETYWLEEDDET--IAAGDGPQPGFPYAGNEVQVPSGGFN 452 (454)
Q Consensus 399 l~~~~~~~v~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
++++.|.+++.+|-.+|+.||.+|+.-| .|+-.+.-|+|+-+.+ |.|.||
T Consensus 475 ~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~----~qg~f~ 526 (526)
T COG5064 475 LQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN----QQGNFN 526 (526)
T ss_pred hhhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc----ccCCCC
Confidence 9999999999999999999999887444 5666666445544443 666664
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-43 Score=316.97 Aligned_cols=362 Identities=26% Similarity=0.410 Sum_probs=324.0
Q ss_pred ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|++|. .+++.+|..|+|+|++++++. ++....+++.|.+|.|++++.+++ .+++++|+|+|+|++.+++.+|+.+++
T Consensus 115 V~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd~vl~ 192 (514)
T KOG0166|consen 115 VEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRDYVLS 192 (514)
T ss_pred HHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHHHHHh
Confidence 56775 566999999999999999998 788889999999999999999999 999999999999999999999999999
Q ss_pred CCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897 81 HGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ 158 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 158 (454)
.|+++.|+.++...+. .+.++++|+|.|+|++..+....-.-..+++.|..++ .+.|+++...++|++++|+.+. +.
T Consensus 193 ~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~ 271 (514)
T KOG0166|consen 193 CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEK 271 (514)
T ss_pred hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHH
Confidence 9999999999998665 8899999999999976532222222234688899998 8889999999999999999887 44
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhc
Q 012897 159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 237 (454)
.......|++|.|+.+|.+.++.++..|+++++|++.+++.+.+.+++.++++.|..++. ++...+++.|||+++|++.
T Consensus 272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 455667899999999999999999999999999999999999999999999999999998 5667799999999999999
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 316 (454)
++....+.+++.++++.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+|+.++.+|...+.++...++.+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999998 689999999999999999999988899999999999
Q ss_pred HHHhcCCCC-------HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 317 ISNATSGGT-------HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 317 L~~l~~~~~-------~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
|.++...+. ......+.+.|+++.+..+-.+.+.++...|...+.+.+..+
T Consensus 431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999987542 233455667899999999999999999999999999988654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-41 Score=285.09 Aligned_cols=360 Identities=26% Similarity=0.361 Sum_probs=314.8
Q ss_pred cccc-cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGV-WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L-~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++++ .......+.+|+|+|++++++. ......+++.|++|.++++|.+++ .+++++++|+|+|++.+++.+|+.+.+
T Consensus 120 vefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~ 197 (526)
T COG5064 120 VEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQ 197 (526)
T ss_pred HHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHh
Confidence 4555 4556778999999999999997 677778899999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-
Q 012897 81 HGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP- 157 (454)
Q Consensus 81 ~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 157 (454)
.|+++.++.++.+. +..+.+++.|+|+|+|+...+....-.-...++.|.+++ ...|+++...|+|++++|+..+.
T Consensus 198 ~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 198 CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHH
Confidence 99999999999874 358899999999999964422111111122578888888 88899999999999999998873
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
........|+.+.|+.+|.+++..++..+++.++|+...++.+.+.+++.|+++.+..+|.++...+|+.|||+++|++.
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 33444557888999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC---CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA 314 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 314 (454)
++.+..+.+++.+++|.|+.+|.+. +-.++++|||+++|...+ .|+.++++++.|+|..|+.+|...+..+.+.++
T Consensus 357 Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~L 435 (526)
T COG5064 357 GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL 435 (526)
T ss_pred CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence 9999999999999999999999999 999999999999999973 678899999999999999999988888888889
Q ss_pred HHHHHhcCCCCHH----------HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 315 WAISNATSGGTHE----------QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 315 ~aL~~l~~~~~~~----------~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
.++.|+...+..+ ...++.+.|+++.+..+-++.+..+..++...+..++.
T Consensus 436 D~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 436 DAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred HHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 9999998866332 23444558999999999999999999999888888874
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=321.91 Aligned_cols=408 Identities=22% Similarity=0.259 Sum_probs=327.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+++.|+++++..|..|+++|..++.+. .+....+++.|++|.|+++|.+++++.+|+.|+|+|++++.++++.+..+++
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~ 272 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 356789999999999999999988775 4578889999999999999987654799999999999999999999999999
Q ss_pred CCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHH---------------------
Q 012897 81 HGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSPR-----------CRDL--------------------- 119 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~~~~--------------------- 119 (454)
.|+++.|+.++.+++ ..++++++|+|+|+|.+.+. .+..
T Consensus 273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~ 352 (2102)
T PLN03200 273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA 352 (2102)
T ss_pred CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence 999999999998654 34699999999999975322 1000
Q ss_pred ----HHh-cCChHHHHHHhc-----------------------------------------hhhhhhHHHHHHHHHHhhc
Q 012897 120 ----VLS-QGALIPLLAQLN-----------------------------------------ERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 120 ----~~~-~~~i~~l~~~l~-----------------------------------------~~~~~~~~~~a~~~L~~l~ 153 (454)
.+. ..+.+.|++++. ...+.+++..++|+|++++
T Consensus 353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC 432 (2102)
T ss_pred hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence 000 011233333331 2234678999999999999
Q ss_pred CCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHH
Q 012897 154 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232 (454)
Q Consensus 154 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 232 (454)
.+. .........+++|.|+.+|.+++..++..+++++++++..++.+...+.+.|+++.|+.+|.+++..+++.|+|+|
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL 512 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL 512 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 875 3344455688999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred hHhhccCccchhhhhccCChHHHHHhhcCCc-------------------------------------------------
Q 012897 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH------------------------------------------------- 263 (454)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~------------------------------------------------- 263 (454)
+|++.+.+.....+.+.|+++.|+++|++..
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL 592 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 9999754433322324455555555554440
Q ss_pred -----------------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHH
Q 012897 264 -----------------------------KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAA 314 (454)
Q Consensus 264 -----------------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 314 (454)
+..+++.|+|+|.+++.++++....++..|+++.++.++..++.++++.++
T Consensus 593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA 672 (2102)
T PLN03200 593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA 672 (2102)
T ss_pred hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence 444555555555555555556566677788999999999998999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897 315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE 394 (454)
Q Consensus 315 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 394 (454)
|+|.+++......+..++.+.|+++.|++++++.+.+++..++.+|.++++.++. ...+...|+++
T Consensus 673 ~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~ 738 (2102)
T PLN03200 673 RALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEALAEDIIL 738 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHH
Confidence 9999999887878788889999999999999999999999999999999987664 34556689999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Q 012897 395 KIENLQSHDNNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 395 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 423 (454)
.|.+++.+.+++.++.|.+.+..+.....
T Consensus 739 ~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 739 PLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988876555
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=321.21 Aligned_cols=411 Identities=19% Similarity=0.198 Sum_probs=362.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
||.+|...+.++|..++++|..++.+. .+..+.+.+.|++|.|+++|.+++ +.+|..|+++|++++.++++.+..+++
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466778889999999999999999876 677889999999999999999998 899999999999999988899999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|+++.|+++| .+.+.+.+..++|+|.+++.......
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999988777778888889999999999 66688999999999999975421110
Q ss_pred --------------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897 161 --------------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202 (454)
Q Consensus 161 --------------------------------------~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 202 (454)
.....++++.|+.+++++++.+++.|+|+|.+++....+...
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 001247899999999999999999999999999999888888
Q ss_pred HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
.++..|+++.++.+|++.+.+++..++++|++++.+.. .++..+++.|+++.|+++|++. +.+++..|+.+|.|++..
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~ 724 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD 724 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999997443 3345678899999999999998 999999999999999986
Q ss_pred CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH--HHHHHHcCCcHHHhhccCCCCHHHHHH--HH
Q 012897 282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ--IKYLVREGCIKPLCDLFVCPDPRIVTV--CL 357 (454)
Q Consensus 282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~~l~~~~~~v~~~--al 357 (454)
. +....+...|+++.|++++++++++.|++|+|+|.+++...+.+. ..++...|.+..|+++|+..|.+.... ++
T Consensus 725 ~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al 803 (2102)
T PLN03200 725 P-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL 803 (2102)
T ss_pred c-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence 4 455677788999999999999999999999999999999876554 356677899999999999998887765 99
Q ss_pred HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897 358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
.+|..+.+..+.... ..+.|..+++..+++++|.+...+.+|.++++|..+|+++..+.
T Consensus 804 ~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 804 EALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 999999987665543 45568999999999999988889999999999999999988654
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.3e-31 Score=224.45 Aligned_cols=395 Identities=21% Similarity=0.233 Sum_probs=333.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
..+++.|+.+|..|..++.+++-. .+..-.+++.+++..|+.-+..+. .++|..++.|+++++. ..+++..+...|
T Consensus 92 ~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~kiA~sG 167 (550)
T KOG4224|consen 92 ALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVKIARSG 167 (550)
T ss_pred HHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhhhhhcc
Confidence 356888999999999999999866 455555677788888877777777 6999999999999999 588899999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
++..+..+-++.+..++.++..+|.++. +..+.|+.+...|+++.|+.++ +..+.+++..++.+++++.-+...++..
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999888899999999999999996 5567899999999999999999 8889999999999999999876555555
Q ss_pred hhhc--hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 163 QVRP--ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 163 ~~~~--~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
...+ ++|.|+.++++++++++-.|..+|.+++.... .+..+.+.|.+|.++.+++++.-....+...|+.|++-+.-
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 5544 99999999999999999999999999997755 45678999999999999999988888999999999987654
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
..-.+.+.|++..|+.+|....+.+++..|..+|.|++..+...+..+.+.|.+|.+..++.++...++.....++..+
T Consensus 325 -Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 -NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred -cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 3345788999999999999886777999999999999988888888999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHH-----hccHHH
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEE-----AEGLEK 395 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~g~~~~ 395 (454)
+.. ......+.+.|.++.|+.+..+.+.+++..+..+|.|+...-+. |.+.++- .|.-..
T Consensus 404 al~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 404 ALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQGIQGR 468 (550)
T ss_pred Hhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcchhHHHH
Confidence 884 35567889999999999999999999999999999999864332 3322221 233345
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 396 IENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
|.++..++..-+...+.+.|..+++
T Consensus 469 L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 469 LARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5666666666677777777666654
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-30 Score=223.11 Aligned_cols=389 Identities=19% Similarity=0.251 Sum_probs=323.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
+.++..++|..++.++.+++.. ......+...|.+.++.++-++.+ ..+|..+..+|.+++. +.++|+.++..|++
T Consensus 135 mmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 135 MMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENRRVLVHAGGL 210 (550)
T ss_pred hcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhhhhhhccCCc
Confidence 4567788999999999999987 567777889999999999877777 8999999999999998 88999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG--ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
|.|+.++.+.+..++..|+.++++++-+ ...|+.+.+.+ .++.|+.++ +++++.++..|..+|.+++.+.......
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~ei 288 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREI 288 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHH
Confidence 9999999999999999999999999754 45788888887 899999999 8889999999999999999986555556
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-CcchhhHHHHHhHhhccCcc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~ 241 (454)
...|.+|.++++++++-.........|+.|++.+.- +...+.+.|++..|+.+|..++ ++++..|..+|.+++...+.
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 668999999999999988888999999999987644 3356888999999999998865 55999999999999998888
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
....+.+.|.++.+..++.+. .-.+|.+...+++.++.. +..+..+.+.|+++.|+.+..+.+.+++.+|+.+|.|++
T Consensus 368 n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 368 NVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 888999999999999999998 888999999999988864 444668889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH------cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH
Q 012897 322 SGGTHEQIKYLVR------EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK 395 (454)
Q Consensus 322 ~~~~~~~~~~l~~------~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 395 (454)
+ +.+....+++ .|.-..|..++.+.+.-++..+.|.+..++..... +
T Consensus 446 s--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~-------------------------~ 498 (550)
T KOG4224|consen 446 S--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL-------------------------P 498 (550)
T ss_pred h--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc-------------------------c
Confidence 8 4455555554 24455677788888888888888888888764322 2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCCccccCC
Q 012897 396 IENLQSHDNNEIYEKAVKILETYWLEEDDETIAAG 430 (454)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 430 (454)
+..+..++ .++-+.+..+.++.-...+.++.||.
T Consensus 499 ~~~~i~~~-ddii~~~~~~~~r~~~~g~~~~~~g~ 532 (550)
T KOG4224|consen 499 LTAFIQSS-DDIIELLNDIVARDANNGEYEDGEGD 532 (550)
T ss_pred HHHHHhCc-hhHHHHHHHHHHHhccCCcccCCCCc
Confidence 33333333 34446666677766655555554443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=6.8e-25 Score=212.00 Aligned_cols=381 Identities=22% Similarity=0.192 Sum_probs=313.9
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
.+...|...|.+++.+ ......|...|+++.|+++|.+++ .++...++.+|.+++. ..+++..+.+.|+++.|.++
T Consensus 264 qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence 3445677778888877 577788999999999999999998 8999999999999999 77899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHH
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 170 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 170 (454)
+.+++.+++..++++|.|++. ++..|..+...|+++.|+.++. ++..+..++.+|++++.+..........+++|.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 999999999999999999975 4568999999999999999994 345667799999999998766666667889999
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897 171 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY 249 (454)
Q Consensus 171 l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 249 (454)
+++++- .+++.+...++..+.|++.+.. +.+.+.+.++++.|+........ ...++++.|++.+.+.....+.
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~-- 489 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV-- 489 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--
Confidence 998764 4567777778888899987754 55778888889999888755333 2345788999987754443332
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHH
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHE 327 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~ 327 (454)
+++..|+.++..+.+.+...++.++|+|+...+.+..+.+.+.+++|.+.+.+..+ ++++..+++..++.++. ++.
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~ 567 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPE 567 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHH
Confidence 57777888888776889999999999999876544444444689999999999875 56799999999999987 667
Q ss_pred HHHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCH
Q 012897 328 QIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 405 (454)
Q Consensus 328 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 405 (454)
....+.+.|+++.|+++++. .|.+++...+.++++++...+. ...++.+.++...+..+.++.|+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCCCH
Confidence 77888899999999999985 5678999999999999987543 35577889999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 012897 406 EIYEKAVKILETYWL 420 (454)
Q Consensus 406 ~v~~~a~~~l~~~~~ 420 (454)
++++.|..++.-..+
T Consensus 635 ~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 635 EIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888887665443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=2.3e-24 Score=208.33 Aligned_cols=356 Identities=19% Similarity=0.235 Sum_probs=294.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|++.|.+++.++...++..|.+++.. .++...|.+.|+++.|.+++.+++ .+++..++++|.|++. +++.|..+++
T Consensus 295 Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R~~mV~ 370 (708)
T PF05804_consen 295 LVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELRSQMVS 370 (708)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence 46778999999999999999999887 578999999999999999999998 8999999999999999 8899999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|++|.|+.+|.++ ..+..++.+|.+++.+. ..+..+...++++.+++++...+++.+...+++++.|++.+.....
T Consensus 371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq 447 (708)
T PF05804_consen 371 LGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ 447 (708)
T ss_pred CCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence 99999999999764 46677999999998654 5788888889999999998777778888889999999999876555
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccC
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 239 (454)
.....++++.|+...-+....+ .+..+.|++.+.+.... .+. +.+..|+..+.. .+++....++.+|+|+...+
T Consensus 448 lm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~-~f~-~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKE-LFV-DFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHH-HHH-HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 5555678888887654333322 34688999988754433 332 577777777766 46788999999999999766
Q ss_pred ccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHH
Q 012897 240 DFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWA 316 (454)
Q Consensus 240 ~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a 316 (454)
......+.+.++++.+...|..+. .+++.-+++..++.++.. +.....+.+.|+++.|+.+++.. |.++..+.+++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence 666666667899999999997552 457888999999988854 67777778999999999999874 78999999999
Q ss_pred HHHhcCCCCHHHHHHHH-HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897 317 ISNATSGGTHEQIKYLV-REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 317 L~~l~~~~~~~~~~~l~-~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~ 371 (454)
+.++..+. +.+..+. +.+++..|++++.++++.++..|-.+|.-+...++...
T Consensus 602 f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 602 FYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999963 4455554 47899999999999999999999999999998876643
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=7.2e-20 Score=173.16 Aligned_cols=366 Identities=21% Similarity=0.233 Sum_probs=285.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR--CR 117 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~ 117 (454)
-+|..+.+|.+.+ +.++..|+.-+-.+|.++.+.+..+.+.|+|+.|+.+|.+++.+++.+++++|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4778889999999 99999999999999999999999999999999999999999999999999999999965544 77
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--------------ChhHH
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--------------DEEVL 183 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------------~~~v~ 183 (454)
-.+.+.++++.+++++....|.++++.+..+|+||+++ +..........++.|..-+-.+ +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999998778999999999999999998 3445555566666666543211 35688
Q ss_pred HHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHhcCC------CCCcchhhHHHHHhHhhccCc----------------
Q 012897 184 TDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD---------------- 240 (454)
Q Consensus 184 ~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~---------------- 240 (454)
.++..||.|++....+..+.+.+ .|++..|+..+++ .+..-.++++-++.|+++.-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 99999999999877766676666 4788888888752 355566777777777764221
Q ss_pred -------------------------------------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-
Q 012897 241 -------------------------------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN- 282 (454)
Q Consensus 241 -------------------------------------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~- 282 (454)
...+.++...++..-+.+|....++.+.+.++.+|.|++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000112222344554555554447889999999999999842
Q ss_pred ---HHHHHHH-HhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC------HHH
Q 012897 283 ---RDQIQAV-IDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD------PRI 352 (454)
Q Consensus 283 ---~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~------~~v 352 (454)
...+..+ .+..+++.|++++..++..|...++.+|.|++.. ... +.++..++++.|+.+|.... .++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2233334 4678999999999999999999999999999984 333 34456889999999997543 578
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHHHHhcCcCC
Q 012897 353 VTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 353 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 423 (454)
...++..|.+++..... ....+.+.+++++|..|.. ..++++.+.|..++..+|+..|
T Consensus 629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999965443 2445666999999998854 4567899999999999998655
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.8e-19 Score=167.10 Aligned_cols=385 Identities=20% Similarity=0.281 Sum_probs=304.6
Q ss_pred cccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|+.. |+..|++|+..|+.++...+.+....+.-.-++|.|+.+|++..+.+++..|+++|.+++..-|.....+++
T Consensus 173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~ 252 (1051)
T KOG0168|consen 173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD 252 (1051)
T ss_pred HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence 4567666 999999999999999887656666555556689999999999888999999999999999988999999999
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.+.||.|+.-|.. ...++.++++.+|-.|++..+ ..++..|++...+.++ +-.+..+++.|+.+..|+|..-...
T Consensus 253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999997776 789999999999999997665 5788899999999999 7788999999999999999987777
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCC----CcchhhHHHHH
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTV 232 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L 232 (454)
.+......+|.|..+|...|.+..+.++.|+..++. +.++..+.+...+++....+++.-.. ..+....++.+
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 777788999999999999999999999999999974 46677888999999999999986542 23445567777
Q ss_pred hHhhccCccchhhhhccCChHHHHHhhcCCc-------------chhHHHHHH---------------------------
Q 012897 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSH-------------KKSIKKEAC--------------------------- 272 (454)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-------------~~~v~~~a~--------------------------- 272 (454)
..++.+++-....+.+.++...+..+|.... .|.-.....
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~ 488 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV 488 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence 7788777766666766676666666663210 000000000
Q ss_pred -------------------------HHHH-------------H---------HhcCCHHHHHHHHhCCChHHHHHHhhhc
Q 012897 273 -------------------------WTIS-------------N---------ITAGNRDQIQAVIDAGLVGPLVNLLQNA 305 (454)
Q Consensus 273 -------------------------~~L~-------------n---------l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 305 (454)
..+. + +....++..+.+. ..++|.|++.+.+.
T Consensus 489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSs 567 (1051)
T KOG0168|consen 489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSS 567 (1051)
T ss_pred cccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhcc
Confidence 0001 0 0001122222333 34788888888876
Q ss_pred -chhhHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHH
Q 012897 306 -EFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQY 383 (454)
Q Consensus 306 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 383 (454)
++.||..++.||..+....+.+.+..++. ..+-..+-.++.+.+..+..-+++...-++++-+. .|
T Consensus 568 A~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd------------~F 635 (1051)
T KOG0168|consen 568 ANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD------------TF 635 (1051)
T ss_pred CCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH------------Hh
Confidence 99999999999999999888888777665 45667788899999999999999999999987443 48
Q ss_pred HHHHHHhccHHHHHHHhcCC
Q 012897 384 AQLVEEAEGLEKIENLQSHD 403 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~~ 403 (454)
...|+++|++..+.+|....
T Consensus 636 ~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 636 SPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred hhhHhhhhHHHHHHHHhccC
Confidence 88999999999999997643
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.80 E-value=8.6e-18 Score=159.27 Aligned_cols=360 Identities=20% Similarity=0.226 Sum_probs=273.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHH
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVI 79 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~ 79 (454)
++.|.+.++.+|-.|+..+..++... ......+-+.|.++.|+.+|.+.. .+++.+|+++|.|+..+... ++-.+.
T Consensus 239 i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai~ 316 (717)
T KOG1048|consen 239 ISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAIK 316 (717)
T ss_pred HHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhhh
Confidence 45678899999999999999988775 555667778899999999999999 99999999999999986655 888889
Q ss_pred hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hh------------hhhhHHHHH
Q 012897 80 DHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ER------------AKLSMLRNA 145 (454)
Q Consensus 80 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~------------~~~~~~~~a 145 (454)
+.++++.++.+|.. .|.++++....+|+||++. +..+..++. ..+..|...+. .. .+.++..++
T Consensus 317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 99999999999997 8999999999999999866 344444443 34555554442 11 136789999
Q ss_pred HHHHHhhcCCCC--CCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCCh-----H-------------
Q 012897 146 TWTLSNFCRGKP--QPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTN-----D------------- 199 (454)
Q Consensus 146 ~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~-----~------------- 199 (454)
..+|.|++.... ...+....|.+..|+..++ ..|.+.++++...+.|++..-. .
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~ 474 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG 474 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence 999999998652 2233345788888887775 3467778899999998874311 0
Q ss_pred -------------HHHH----------------------HHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccch
Q 012897 200 -------------KIQA----------------------VIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 200 -------------~~~~----------------------~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~ 243 (454)
..+. +....++..-+.++ .+.++.+.++++.+|.|++.+.....
T Consensus 475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 0000 11111233322233 23456788999999999998765332
Q ss_pred h----hh-hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc------chhhHHH
Q 012897 244 Q----CI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA------EFDIKKE 312 (454)
Q Consensus 244 ~----~~-~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v~~~ 312 (454)
. .+ .+..+++.++++|..+ +..+...++.+|.|++.+. . .+.++...+++.|++.+... +.++...
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~-r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI-R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc-h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 2 23 5678999999999999 9999999999999999752 2 33556688999999999764 3688889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhh
Q 012897 313 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 313 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~ 369 (454)
++.+|.++... +....+.+.+.+.++.|+.+.++. ++++.+++...|..+..+.+-
T Consensus 632 vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 632 VCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 567778889999999999988764 568888888888888776553
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.80 E-value=7.8e-16 Score=148.05 Aligned_cols=394 Identities=16% Similarity=0.163 Sum_probs=288.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+.+|++.+.+....++..|.+++... ..... ..++.+.|...|.+++ +.+|..+++.+.++..++......+.+.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 45677888888889999999998774 22221 5567899999999999 9999999999999998777778888889
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 160 (454)
++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++. ..
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999766544 5566777788888888 555778899999999999877633 33
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcc------hhhHHHHHhH
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSV------LIPALRTVGN 234 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v------~~~a~~~L~~ 234 (454)
.....|+++.++..+.++|.-++.+++..+..++. .+...+.+.+.|+++.|..++.+...+- ....+...++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 34457899999999999999999999999999998 4556688899999999999997643222 2233466677
Q ss_pred hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH-HhC-CC----hHHHHHHhhhcchh
Q 012897 235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV-IDA-GL----VGPLVNLLQNAEFD 308 (454)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~~~ 308 (454)
++...+....... ..++..+..++.+. ++..+..|.-+++.++.. .+....+ ... +. +........++..+
T Consensus 276 la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 276 LARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 7764332221111 24556667777777 899999999999999854 5555555 332 23 34444444556788
Q ss_pred hHHHHHHHHHHhcCCCCH---HHH----HHHH---HcCCcH-HHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 012897 309 IKKEAAWAISNATSGGTH---EQI----KYLV---REGCIK-PLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTAT 377 (454)
Q Consensus 309 v~~~a~~aL~~l~~~~~~---~~~----~~l~---~~~~i~-~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 377 (454)
+|..++.++.++...... +.. .... ..+... .++.+++.+=|+++.+++..|..++...--
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-------- 424 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-------- 424 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH--------
Confidence 999999999999654432 111 1111 124445 788899988899999999999999875322
Q ss_pred ccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 378 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 378 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
...+....|.++-+..-....+.+.++.=-.++..+.
T Consensus 425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2445566666666655444455555433333444444
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.80 E-value=2.1e-16 Score=151.91 Aligned_cols=369 Identities=17% Similarity=0.177 Sum_probs=279.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 120 (454)
.+.+..+|+..+ .+....++.+|..+.... ..... ..++.+.|...|.++++.+|..+++.+.++..++......+
T Consensus 40 ~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 40 EPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 344888898887 677788888999888722 22222 45678999999999999999999999999998887777788
Q ss_pred HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 012897 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200 (454)
Q Consensus 121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 200 (454)
.+.+.++.++.++ .+++..+...|+.+|..++............+.++.|..++...++.+|..++.++.+++..+++.
T Consensus 116 ~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8889999999999 888999999999999999987654444445666889999998888999999999999999999988
Q ss_pred HHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh-----HHHHHHHHH
Q 012897 201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS-----IKKEACWTI 275 (454)
Q Consensus 201 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~-----v~~~a~~~L 275 (454)
...+.+.|+++.++..+.+++.-++.+++.++..++. .+...+.+.+.|+++.|..++.+..... .-.......
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 8889999999999999999888899999999999999 6667888999999999999997652222 222334566
Q ss_pred HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHH-HHc-----CCcHHHhhccCCCC
Q 012897 276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL-VRE-----GCIKPLCDLFVCPD 349 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~i~~L~~~l~~~~ 349 (454)
++++...+..+.... ..++..+.+++.+.++..+..|..+++.++. +.+....+ ... .++..+.....+..
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777764444332222 3466777788888899999999999999987 44555555 322 24555556666778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH-HHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 350 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE-KIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 350 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
.+++..++.++.+++..........-.. ....+...+. .+... .+..+.+.+=++++..+..++..+..
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~-~~~~w~~~~~-~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILS-ITESWYESLS-GSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHH-HHHHHHHHhc-CCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 8999999999999987655311100000 0111112222 22222 56777888889999999998887654
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.77 E-value=2.7e-16 Score=138.25 Aligned_cols=396 Identities=14% Similarity=0.090 Sum_probs=279.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+...+..++..+..++.+.+.++. +...+.-+..+.++.|.+...+++ .++..++.++|+|+|..+.+.|..+.+.|
T Consensus 51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 344566778888888888875531 112333466778888999999987 89999999999999999999999999999
Q ss_pred ChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-h-----------------
Q 012897 83 AVPIFVKLLAS-------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-A----------------- 137 (454)
Q Consensus 83 ~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~----------------- 137 (454)
+-..++..|+. .+.+....+...|.|...++.+.+..+.+.|+++.|...+.-+ .
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls 209 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS 209 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence 98888887764 2357777888999999999999999999999999877665210 0
Q ss_pred ---------------------------hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-CChh-------H
Q 012897 138 ---------------------------KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEE-------V 182 (454)
Q Consensus 138 ---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~-------v 182 (454)
.++..+.+...+...+.++...-.....|.+..++.+++. .+.. .
T Consensus 210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l 289 (604)
T KOG4500|consen 210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL 289 (604)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence 1223333444444444443222223335555666666654 1111 1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897 183 LTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261 (454)
Q Consensus 183 ~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 261 (454)
...++....-+... ++..+.+...+ ++..+..++.+.+......+.-+++|+++... .+..+++.+++..|++++..
T Consensus 290 ~k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 290 FKRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HHhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHH
Confidence 12222222222223 33445555545 88899999999999999999999999999665 45568888999999999954
Q ss_pred C----cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 012897 262 S----HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC 337 (454)
Q Consensus 262 ~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 337 (454)
. .+-.++..++.+|.|+.-..+ ++..++..|+.+.++.+++...|++...-+.++.-+....+.-..+.......
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l 446 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPEL 446 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccCC-chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHH
Confidence 1 144677788999999987422 34467788999999999999999999999999987766432222222233466
Q ss_pred cHHHhhccCCCCHH-HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 012897 338 IKPLCDLFVCPDPR-IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415 (454)
Q Consensus 338 i~~L~~~l~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 415 (454)
++.|++.-+++|.. +.-.+.+.+..+++...... ....+.+.|+++....+....+-.+++.|...+
T Consensus 447 ~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd-----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal 514 (604)
T KOG4500|consen 447 FEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD-----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL 514 (604)
T ss_pred HHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh-----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence 88888888888765 77778888888887643321 445667799999999998888888888776644
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.76 E-value=2.8e-16 Score=155.79 Aligned_cols=353 Identities=20% Similarity=0.213 Sum_probs=272.4
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH---
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV--- 88 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~--- 88 (454)
..-++.|..+.+. .+....+...|.++.|+++|.-++ +.+.+..|-.+|.|+....++....-.+..++..|-
T Consensus 212 ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 212 EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4556667677665 566777889999999999998765 257899999999999986655543333323333322
Q ss_pred -------HhhCC-----CC--HHHHH-HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-----------hhhhhHH
Q 012897 89 -------KLLAS-----PS--DDVRE-QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----------RAKLSML 142 (454)
Q Consensus 89 -------~lL~~-----~~--~~v~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----------~~~~~~~ 142 (454)
.+++. .. .+.+. .|+.+|..+ +.++++|..+.+.|+++.+-+++.. ..+..++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~-SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKL-SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHh-hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 22222 11 23333 455666666 4667899999999999999988742 2245799
Q ss_pred HHHHHHHHhhcCCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhc-C
Q 012897 143 RNATWTLSNFCRGKPQP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELL-G 218 (454)
Q Consensus 143 ~~a~~~L~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll-~ 218 (454)
+++..+|.||+..+... ......+++..++..|.+..+++.......|.||+...+.+...++ +.|-+..|.... .
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999987333 3334589999999999999989999999999999987766655554 457777777664 5
Q ss_pred CCCCcchhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCC---cchhHHHHHHHHHHHHhc---CCHHHHHHHHh
Q 012897 219 HPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHS---HKKSIKKEACWTISNITA---GNRDQIQAVID 291 (454)
Q Consensus 219 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~---~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~ 291 (454)
...+......+.+||||+.++.+.+..+- -.|.+..|+.+|... ..-.+.+.+..+|.|++. .++.+++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 55667888999999999998877765554 458999999999643 144677889999998886 46777878889
Q ss_pred CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
.+.+..|++.|++.+..+..++|.+|.||... +++..+.|++.|.+..|..++.+++..+..-+..+|.|++..-...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 99999999999999999999999999999887 4556688899999999999999999999999999999999876433
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=5.6e-16 Score=132.13 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=255.2
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
.+++..+-..++.+|..+..+. + .+.+..+...++++|.... +.++....+.++..-|..++.++..+++.++.
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q--p---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ--P---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC--c---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4677888899999998888764 2 2456677888999987643 37888888999999998899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897 85 PIFVKLLAS-PSDDVREQAVWALGNVAGDSP---------RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 85 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (454)
+.+...|.. +...+.+.+.|+++.+..+++ .+...+...+++..|++.+.-..++.+....+.+|..|+-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999987765 344577778999999876543 2345667777889999999767789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcCCC-hh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--CCCCcchhhH
Q 012897 155 GKPQPPFDQVRPALPALAQLVHSND-EE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPA 228 (454)
Q Consensus 155 ~~~~~~~~~~~~~l~~l~~ll~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a 228 (454)
.++........|++..++.++.+.+ .. ....++..|..++-+++ ....+++.|+.+.++.++. ..+|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 7766777778999999999998743 33 45678888888886544 5577899999999999873 3678899999
Q ss_pred HHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch
Q 012897 229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF 307 (454)
Q Consensus 229 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 307 (454)
+.+++.++-..++....+++.|+-...++.|+ ++....++++|||.+.|++..+.++...++ ..+++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCc
Confidence 99999999999999999999999999999996 444668999999999999998888887777 4678889999999899
Q ss_pred hhHHHHHHHHHHhcC
Q 012897 308 DIKKEAAWAISNATS 322 (454)
Q Consensus 308 ~v~~~a~~aL~~l~~ 322 (454)
.....|..+|..+-.
T Consensus 430 tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHhcCc
Confidence 999999999988855
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.9e-15 Score=134.91 Aligned_cols=384 Identities=16% Similarity=0.157 Sum_probs=286.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+|++|.-++.++.......|.++... .++...|...|++..|++++...+ ++++..++..+.|++- +...+..++.
T Consensus 309 LVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~KMv~ 384 (791)
T KOG1222|consen 309 LVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRPKMVN 384 (791)
T ss_pred HHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccHHHhh
Confidence 36677888888888888888888776 578888999999999999999999 9999999999999998 7788999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|.+|.+..++.+.. -...|+..+..++.+. ..+..+...++++.+++.+....+.++-...+...-|+|.+..+.+
T Consensus 385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ 461 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ 461 (791)
T ss_pred ccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence 999999999997643 3344677888886544 4677777778888888877677777777777777789998876666
Q ss_pred hhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc
Q 012897 161 FDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 161 ~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 238 (454)
.......+..|... +.+.|+-+ ...+.|++.+.......+++ .+..|...++. .++.....++.+++|+...
T Consensus 462 lvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~ 535 (791)
T KOG1222|consen 462 LVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVT 535 (791)
T ss_pred EEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccC
Confidence 66666677776654 55555543 34567788776544444543 45666666654 4566788899999999876
Q ss_pred CccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHH
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAW 315 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~ 315 (454)
.-.+...+-+.+.+|.+-..|..+. ..++.-....+++.++.. ..+...+...++++.++++++.. +.+...+...
T Consensus 536 dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qiiy 614 (791)
T KOG1222|consen 536 DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIY 614 (791)
T ss_pred CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHH
Confidence 6667777778899999999987542 345666777777777754 34444555789999999999874 7788888889
Q ss_pred HHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897 316 AISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE 394 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 394 (454)
++..+..+ ...+..++. ...-..+++++.+.+.++++.|-.+|.-+...+....+.... -+.....+.+++
T Consensus 615 VF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~------EkFrwHNsQWLe 686 (791)
T KOG1222|consen 615 VFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAG------EKFRWHNSQWLE 686 (791)
T ss_pred HHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhh------hhcccchhHHHH
Confidence 99888885 344555554 566778999999999999999999999998887776653221 122334455555
Q ss_pred HHHHHhcCCCHH
Q 012897 395 KIENLQSHDNNE 406 (454)
Q Consensus 395 ~l~~l~~~~~~~ 406 (454)
-.+.-+.++++.
T Consensus 687 MVEs~q~ddsEq 698 (791)
T KOG1222|consen 687 MVESQQRDDSEQ 698 (791)
T ss_pred HHHHhhccchhh
Confidence 555545544443
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.7e-15 Score=145.36 Aligned_cols=359 Identities=19% Similarity=0.215 Sum_probs=253.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---hhhHHH
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS---ENTKVV 78 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~ 78 (454)
+++.+|+|+..|..|+..|..+........... -..+.+.+.+.+.+++++ +|..|+++++.++...+ ..++.+
T Consensus 124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~ 200 (1075)
T KOG2171|consen 124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKF 200 (1075)
T ss_pred HHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHH
Confidence 567799999999999999999876542222111 112577788899999855 99999999999887443 333333
Q ss_pred HhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhc
Q 012897 79 IDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 79 ~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~ 153 (454)
. ..+|.++..+. .++......++.+|..++...+.+-...+. .++...+++.. ++-++.+|..|+.+|..++
T Consensus 201 ~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 201 R--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS 277 (1075)
T ss_pred H--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3 45666666554 466777788888888888666543222211 12333333332 2234556666666555554
Q ss_pred CCCCC----------------------------------------------------------CChhhhhchHHHHHHhh
Q 012897 154 RGKPQ----------------------------------------------------------PPFDQVRPALPALAQLV 175 (454)
Q Consensus 154 ~~~~~----------------------------------------------------------~~~~~~~~~l~~l~~ll 175 (454)
+..+. ........+++.+-.++
T Consensus 278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 43100 00011133455666777
Q ss_pred cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897 176 HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL 255 (454)
Q Consensus 176 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 255 (454)
.+.+..-|.+++.+|+.++.+..+.+...+. .+++.++..+.++++.||.+||.+++.++..-....+.-....+++.|
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 8899999999999999999998877776555 788999999999999999999999999998766666666677888999
Q ss_pred HHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChH-HHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHH
Q 012897 256 LGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVG-PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLV 333 (454)
Q Consensus 256 ~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 333 (454)
+..+.+..++.++..|+.++-|++.. ..+.+...+ .+++. .+..+++++.+.+++.+..+|+..+......+.+|+-
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d 515 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD 515 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 99999987889999999999999984 344444444 34566 5555666779999999999999999877777777765
Q ss_pred HcCCcHHHhhccCCCC----HHHHHHHHHHHHHHHHhhhhh
Q 012897 334 REGCIKPLCDLFVCPD----PRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 334 ~~~~i~~L~~~l~~~~----~~v~~~al~~L~~l~~~~~~~ 370 (454)
. .++.|..++.+.+ ..++-++..|+.-+-....+.
T Consensus 516 ~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 516 R--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred H--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 5 7888888888655 346777777777776554443
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-14 Score=124.39 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=249.1
Q ss_pred cCCHHHHHHh---hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 012897 38 SGVVPRFVEF---LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGD 112 (454)
Q Consensus 38 ~~~l~~L~~l---L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~ 112 (454)
.|..+.++-. -.+++ ..+...++.+|..+..+.|+. ++..++..++.+|.. .+.++....+.++..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3555544433 33445 778889999999998866654 466789999998864 6688888889999999988
Q ss_pred ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC----------hhhhhchHHHHHHhhcCC-Chh
Q 012897 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP----------FDQVRPALPALAQLVHSN-DEE 181 (454)
Q Consensus 113 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~~-~~~ 181 (454)
.+.+|+.+++.++++.+.+.+.......+.+..+|+++.|..++..+. .....+++..|+..+.-. +|.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 888999999999999999888766666899999999999998763321 112245677788877643 688
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-Cc---chhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PS---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 257 (454)
+....+.+|..++..+ +....+.+.|++..++.++.+.+ .. ..+.++..|..++ +++..+..+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 9999999999998764 46688999999999999998843 33 3456777777777 46678888999999999988
Q ss_pred hhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012897 258 LLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHEQIKYLVR 334 (454)
Q Consensus 258 ~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 334 (454)
++. +..+|.+..+++.+++-++..+|++-..+++.|+-...++.++.. ...++++++|.+.|+...+ .+++..++.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~ 414 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA 414 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence 873 444889999999999999998899998999999988888888763 6789999999999999874 455555554
Q ss_pred cCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897 335 EGCIKPLCDLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 335 ~~~i~~L~~~l~~~~~~v~~~al~~L~~l 363 (454)
.+++.|+..-...++.+...+-.+|..+
T Consensus 415 -~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 415 -NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 4588888888888887777766666665
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.8e-15 Score=131.37 Aligned_cols=377 Identities=19% Similarity=0.131 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
.+...|+..|.+++.. ...-..|.+.+++..|++.|..++ .++.......|.+++- ..+++..+.+.|+++.|+++
T Consensus 278 qLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence 4445677778888866 455667888999999999999999 7999999999999988 67888899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHH
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPA 170 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 170 (454)
+....++++...+..+.|++.+. ..+...+..|.+|.+..++..+.. ..-|+..++.++.++....+.....+++.
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~ 429 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKL 429 (791)
T ss_pred cCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence 99999999999999999997554 578888999999999999954332 34466778888887766666677889998
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897 171 LAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY 249 (454)
Q Consensus 171 l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 249 (454)
+.+.+- ..+.++-...+..-.|+|-+.. +.+.+.+...+..|+..--.....+ -++.+.|++.+.......++
T Consensus 430 lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fi-- 503 (791)
T KOG1222|consen 430 LMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFI-- 503 (791)
T ss_pred HHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHH--
Confidence 887654 4455554444444456665433 3355666666777766542222222 34556677766553444444
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCHH
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTHE 327 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~ 327 (454)
..+.-|..+++...+.....++..+++|+....-+-.+.+.+.+.+|.+-..+..+ ..++......+++.++. +..
T Consensus 504 dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~~ 581 (791)
T KOG1222|consen 504 DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DLD 581 (791)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hhH
Confidence 34556777777665667888899999999875444444455788999999999875 56688888888888887 445
Q ss_pred HHHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCH
Q 012897 328 QIKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN 405 (454)
Q Consensus 328 ~~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 405 (454)
....+...++++.|+++++. .+.+.+...+..+..+++.... ..-++++...-..+..++++.|.
T Consensus 582 cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLMHDkN~ 648 (791)
T KOG1222|consen 582 CARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLMHDKNA 648 (791)
T ss_pred HHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHHhcccH
Confidence 55666788999999999985 5567777788888888876222 35577778778889999999999
Q ss_pred HHHHHHHHHHH
Q 012897 406 EIYEKAVKILE 416 (454)
Q Consensus 406 ~v~~~a~~~l~ 416 (454)
++++-+...+.
T Consensus 649 eiRkVCDn~Ld 659 (791)
T KOG1222|consen 649 EIRKVCDNALD 659 (791)
T ss_pred HHHHHHHHHHH
Confidence 99877665544
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.2e-14 Score=143.11 Aligned_cols=351 Identities=15% Similarity=0.161 Sum_probs=251.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 86 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 86 (454)
...+.+|..-+..+..++++.-++ -..++++.|.+..++++ +..|+.|+.+|..+...........+ ..+.+.
T Consensus 91 E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~l 163 (1075)
T KOG2171|consen 91 ETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRL 163 (1075)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHH
Confidence 345788888888888888775222 45678999999999999 99999999999999873332222111 134566
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
+.+.+.+++..+|..++++++.++...+ ..++.+. ..+|.++..+. +..+.+....++.+|..+....+..-
T Consensus 164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 6677777776699999999999874442 2222222 24666666663 34466667888888888887765555
Q ss_pred hhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHH--HHh-----------------------------
Q 012897 161 FDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAV--IEA----------------------------- 207 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~----------------------------- 207 (454)
......++.....+..+. ++.+|..|+.+|..+++..+...+.. +..
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 555666777777766654 57788888888877765422221110 000
Q ss_pred --------------------------CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897 208 --------------------------GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261 (454)
Q Consensus 208 --------------------------~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 261 (454)
-+++.+-.+++++++.-|.+++.+|+.++.++.+.....++ .+++.++..|.+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC
Confidence 13444555567777788999999999999988766554333 788999999999
Q ss_pred CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH-
Q 012897 262 SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK- 339 (454)
Q Consensus 262 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~- 339 (454)
+ ++.||..|+.+++.++.+-...++.-....+++.|+..+.+. +++|+..|+.++.|++....++....-. .+++.
T Consensus 401 p-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~ 478 (1075)
T KOG2171|consen 401 P-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEK 478 (1075)
T ss_pred C-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHH
Confidence 9 999999999999999986444455555567888999988875 7899999999999999987766543312 24566
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 340 PLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 340 ~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
.+..+++++.+.+++.++.+|..+....+.
T Consensus 479 ~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 479 KLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 455566778899999999999999876554
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=9.7e-16 Score=141.57 Aligned_cols=393 Identities=18% Similarity=0.219 Sum_probs=252.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-- 80 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-- 80 (454)
.++.+.++-+|--.-..++.+.+...-.. ...++|.|..+|.+++ ....+-|..+|.+++.++.+..+.-..
T Consensus 97 ~~lgd~~~lIr~tvGivITTI~s~~~~~~-----wpelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 97 HGLGDASPLIRATVGIVITTIASTGGLQH-----WPELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred hhccCchHHHHhhhhheeeeeeccccccc-----chhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 34455555555554445555554431111 1457999999999999 788999999999999977665544221
Q ss_pred --CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 81 --HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 81 --~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
.-.+|.++.+.+++++.+|..|+.++..+.-..+.. .... ...++.+..+- .+.+++||++.|.++..|..-.+
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcH
Confidence 136899999999999999999999999876443321 1111 11344444444 78899999999999999998877
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH--HHH--------------------------------
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK--IQA-------------------------------- 203 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~~-------------------------------- 203 (454)
..-.....+++..++...++.|++|...||.....++...... ...
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 7777778889999999998889889888888887777543110 000
Q ss_pred ---------------------------------------------------------HHHhCcHHHHHHh----cCCCCC
Q 012897 204 ---------------------------------------------------------VIEAGVCPRLVEL----LGHPSP 222 (454)
Q Consensus 204 ---------------------------------------------------------~~~~~~i~~L~~l----l~~~~~ 222 (454)
++...+++.++.+ |.++++
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W 407 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEW 407 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchh
Confidence 1111222222222 334455
Q ss_pred cchhhHHHHHhHhhccCccchhhhhcc--CChHHHHHhhcCCcchhHHHHHHHHHHHHhcC--CHHHHHHHHhCCChHHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITY--GALPYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPL 298 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L 298 (454)
.+|+++..+++.++.++-.. ++.. .+++.++.+|.+. .+-||.-.||+|+..+.- ... ....+ ..++..|
T Consensus 408 ~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f-~pvL~~l 481 (885)
T KOG2023|consen 408 KVREAGVLALGAIAEGCMQG---FVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYF-KPVLEGL 481 (885)
T ss_pred hhhhhhHHHHHHHHHHHhhh---cccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhh-HHHHHHH
Confidence 66777777777777654322 1111 3678899999999 999999999999988751 111 21222 1245566
Q ss_pred HHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcc
Q 012897 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATA 378 (454)
Q Consensus 299 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 378 (454)
++.+-+++.+|++.|+.++..+-.....+..+++-. .+..|+..+..-..+-......++..+.......-..
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~----- 554 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK----- 554 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc-----
Confidence 666677899999999999999988766666555433 4555555555333333333455566665544332211
Q ss_pred cccHHHHHHHHhccHHHHHHHhcC------------------------CCHHHHHHHHHHHHHhcC
Q 012897 379 DVNQYAQLVEEAEGLEKIENLQSH------------------------DNNEIYEKAVKILETYWL 420 (454)
Q Consensus 379 ~~~~~~~~l~~~g~~~~l~~l~~~------------------------~~~~v~~~a~~~l~~~~~ 420 (454)
..|.+++. .-.+++.+.+-++ -.+.|++++..+++...+
T Consensus 555 --~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q 617 (885)
T KOG2023|consen 555 --PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQ 617 (885)
T ss_pred --HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHH
Confidence 11333332 3333444433322 236789999999997654
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.70 E-value=5.8e-14 Score=123.84 Aligned_cols=357 Identities=13% Similarity=0.093 Sum_probs=258.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC---C---ChhHHHHHHHHHHHhcCCCchhh
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE---D---YPQLQFEAAWALTNIASGTSENT 75 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~---~---~~~v~~~a~~~L~~l~~~~~~~~ 75 (454)
.+..+|+|.++..+..++|.+++..+ .+.+..+.+.|+-..+++.|+.- + ..+....+...|.|...++.+.+
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~ 171 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR 171 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence 35567889999999999999999887 78888999999977777777642 1 24566677888999999999999
Q ss_pred HHHHhCCChHHHHHhhCC--CCHHHHHH--------------------------------------------HHHHHHHh
Q 012897 76 KVVIDHGAVPIFVKLLAS--PSDDVREQ--------------------------------------------AVWALGNV 109 (454)
Q Consensus 76 ~~~~~~g~i~~L~~lL~~--~~~~v~~~--------------------------------------------a~~~L~~l 109 (454)
..+++.|+++.|...+.- .+....+. +..+++..
T Consensus 172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ 251 (604)
T KOG4500|consen 172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA 251 (604)
T ss_pred HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 999999999988776532 22222222 22222222
Q ss_pred hCCChhhHHHHHhcCChHHHHHHhchhh-------hhhHHHHHHHHHHhhcCCCCCCChhhhhc-hHHHHHHhhcCCChh
Q 012897 110 AGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWTLSNFCRGKPQPPFDQVRP-ALPALAQLVHSNDEE 181 (454)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~l~~l~~ll~~~~~~ 181 (454)
+. ++..+-.+.+.|.+..+..++.+-+ .......++....-+..+++........+ ++..+..+++++|..
T Consensus 252 ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~ 330 (604)
T KOG4500|consen 252 AE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSN 330 (604)
T ss_pred hc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchh
Confidence 21 1122333445566666666664311 22344455555555555443333334344 899999999999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHH
Q 012897 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 256 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 256 (454)
.+..+..+|+|++++++.. ..+++.+++..|+.++.. ++.+++.+++.+|.|++--. ..+..+...|+.+.++
T Consensus 331 l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL 408 (604)
T KOG4500|consen 331 LITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAIL 408 (604)
T ss_pred HHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHH
Confidence 9999999999999987655 558888999999999844 56778899999999998743 3666788999999999
Q ss_pred HhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchh-hHHHHHHHHHHhcCCCC-HHHHHHHH
Q 012897 257 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFD-IKKEAAWAISNATSGGT-HEQIKYLV 333 (454)
Q Consensus 257 ~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~-~~~~~~l~ 333 (454)
..++.. .|.+...-..+++.+..+-+.....+. +...+..|+++-+++|.. |..+..+.+.-+..+.. .+....+.
T Consensus 409 ~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvp 487 (604)
T KOG4500|consen 409 LQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVP 487 (604)
T ss_pred HHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhcc
Confidence 999999 888888888888888766554444555 345788999999888765 88888888888887642 23445556
Q ss_pred HcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897 334 REGCIKPLCDLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l 363 (454)
++|+++.++.++...+-.++..++-++..+
T Consensus 488 ksg~ik~~Vsm~t~~hi~mqnEalVal~~~ 517 (604)
T KOG4500|consen 488 KSGGIKEKVSMFTKNHINMQNEALVALLST 517 (604)
T ss_pred ccccHHHHHHHHHHhhHHHhHHHHHHHHHH
Confidence 789999999999877766666666555544
No 26
>PRK09687 putative lyase; Provisional
Probab=99.69 E-value=4e-15 Score=131.37 Aligned_cols=257 Identities=15% Similarity=0.144 Sum_probs=202.6
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
.--++.|...|.+.+ ..+|..|++.|..+-. ...++.+..++.++++.+|..++++|+.+-.... ..
T Consensus 22 ~~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~~ 88 (280)
T PRK09687 22 KLNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-CQ 88 (280)
T ss_pred hccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-ch
Confidence 345788999999999 8999999999988764 2457888888999999999999999999953221 11
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
. ..++.|..++..++++.|+..++.+|++++...... ....+..+...+.++++.|+..++++|+.+..
T Consensus 89 ~-----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 89 D-----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred H-----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 1 236667777558889999999999999997543211 23456667788888899999999999976642
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
...++.|+.++.++++.+|..|+.+|+.+...++ ...+.|+..|.+. ++.||..|+++|+.
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLAL 218 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHc
Confidence 1367889999999999999999999999943333 4567899999988 99999999999998
Q ss_pred HhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHH
Q 012897 278 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVC 356 (454)
Q Consensus 278 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~a 356 (454)
+.. + .+++.|++.+++++ ++..++.+|+++-. ++ .++.|..+++ ++|+.++..+
T Consensus 219 ~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 219 RKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence 642 2 46888999998765 67889999998854 22 5888888886 7899999999
Q ss_pred HHHHHH
Q 012897 357 LEGLEN 362 (454)
Q Consensus 357 l~~L~~ 362 (454)
.+++..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 888754
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.66 E-value=5.6e-14 Score=130.36 Aligned_cols=362 Identities=15% Similarity=0.112 Sum_probs=254.0
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
.+.+.||+....|.....+++.+. ++....+++.|.++.++.++...+ .++.+...+.++.....+.......+.+.+
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~ 95 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII 95 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence 355678999999999999998887 455557899999999999988765 267777788888888888889999999999
Q ss_pred ChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 83 AVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 83 ~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.++.|+.++.+++ ..+++..++++.++...++..... .....++..+.-++ ..+...+...-+....+++......
T Consensus 96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhh
Confidence 9999999999988 899999999999998655422111 11122233333333 2233344444445555555554344
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHH---HhccCChHHHHH----HHHhCcHHH--HHHhcCCCCC--------
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALS---YLSDGTNDKIQA----VIEAGVCPR--LVELLGHPSP-------- 222 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~----~~~~~~i~~--L~~ll~~~~~-------- 222 (454)
......++.+.+.-++...+...|..++.+++ ++..+++..... +.+.++.+. +..++++++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 44445667777777777777778888888887 555554433222 112222221 1111221111
Q ss_pred --------------------------------------------------------------------------------
Q 012897 223 -------------------------------------------------------------------------------- 222 (454)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (454)
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence
Q ss_pred ---------------------------------------------------------cchhhHHHHHhHhhccCccchhh
Q 012897 223 ---------------------------------------------------------SVLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 223 ---------------------------------------------------------~v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
.++.++|.++-++++.-......
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22333444444443321111111
Q ss_pred hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897 246 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 246 ~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 325 (454)
+-...+...+++++..+ +..++..+.++++|+..........++..|+|+.+..++.+.++.++..+.|+|.++..+++
T Consensus 415 ~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 22346778899999888 88999999999999998666667788899999999999999999999999999999999877
Q ss_pred HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 326 HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 326 ~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
......+...-....+..+.+++++.|++.++..|.|+.....
T Consensus 494 e~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 494 EEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 6666666666667788889999999999999999999986533
No 28
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=1.9e-14 Score=127.09 Aligned_cols=249 Identities=16% Similarity=0.113 Sum_probs=193.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|.++|..+|..|+++|..+-.. .+++.+..++++++ +.+|..++++|+.+-... .. ..
T Consensus 29 ~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-----~~ 89 (280)
T PRK09687 29 FRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-----QD 89 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-----hH
Confidence 4567899999999999999876422 24677888889988 999999999999987521 11 12
Q ss_pred CChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 82 GAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 82 g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
..++.|..+ ++++++.||..++.+|++++......... .+..+...+ .+++..|+..++++|..+..
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~-----a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPK-----IVEQSQITA-FDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchH-----HHHHHHHHh-hCCCHHHHHHHHHHHhccCC------
Confidence 356778776 67789999999999999997443211111 244455555 66688999999999977643
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
...++.|+.++.++++.++..++.+|+.+....+ .+++.|+..+.+.++.||..|++.|+.+-. +
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~ 222 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD--K 222 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC--h
Confidence 3578999999999999999999999999843332 356778899999999999999999988542 1
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISN 319 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~ 319 (454)
..++.|++.|.++ + ++..++.+|+++.. + ..+|.|.++++ .+|..++..+.+++..
T Consensus 223 ---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 223 ---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 5688999999887 4 78889999998853 2 36888999997 6799999999998853
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=3.9e-15 Score=147.89 Aligned_cols=268 Identities=20% Similarity=0.170 Sum_probs=226.2
Q ss_pred HHH-HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-----------ChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 12 LQL-EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 12 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
-++ .|+..|.++..+ .++...|-+.|+++.+-+++.-.. +..+|..|..+|.||+.++..++..+.
T Consensus 313 H~lcaA~~~lMK~SFD--EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC 390 (2195)
T KOG2122|consen 313 HQLCAALCTLMKLSFD--EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC 390 (2195)
T ss_pred hhhHHHHHHHHHhhcc--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 344 777788887766 688999999999999988775321 246899999999999998887777776
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 80 D-HGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 80 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
. .|+++.++..|.+..+++.+....+|.||+ .-+...+..+.+.|-+..|+........+......+.+||||+.+..
T Consensus 391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct 470 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT 470 (2195)
T ss_pred hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence 4 599999999999999999999999999998 44445677778888899998887677788889999999999999883
Q ss_pred --CCChhhhhchHHHHHHhhcCC----ChhHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhH
Q 012897 158 --QPPFDQVRPALPALAQLVHSN----DEEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228 (454)
Q Consensus 158 --~~~~~~~~~~l~~l~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 228 (454)
...+....|++.+|+.+|.-. .-.+++.+..+|.|++. ......+.+.+..++..|++.|++..-.+..++
T Consensus 471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence 334555689999999999643 56688899999988763 345566778889999999999999999999999
Q ss_pred HHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897 229 LRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 282 (454)
Q Consensus 229 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~ 282 (454)
|.+|+||+..+++..+.+++.|.++.|..++.+. +..+-..++.+|.|+....
T Consensus 551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999 8889999999999998754
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.64 E-value=8.4e-14 Score=143.64 Aligned_cols=270 Identities=19% Similarity=0.191 Sum_probs=211.5
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|.++|+.+|..|+..|..+... ..++.|+..|.+++ +.+|..|+.+|..+....
T Consensus 627 ~~~L~D~d~~VR~~Av~~L~~~~~~------------~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---------- 683 (897)
T PRK13800 627 APYLADPDPGVRRTAVAVLTETTPP------------GFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---------- 683 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhhhcch------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----------
Confidence 4678899999999999999886422 25788999998888 899999999998875311
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
...+.|...|.++++.+|..++..|..+.... ...++..+ .++++.++..++.+|..+-.
T Consensus 684 ~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 684 PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-------
Confidence 12357778888899999999999998874221 23456667 78889999999999987621
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
.+.+..++.++++.|+..++.+|..+..... ..++.|..+++++++.+|..|+.+|+.+....
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-- 806 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPP-- 806 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc--
Confidence 1346778999999999999999998865322 23677889999999999999999999885421
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
.....+...|.++ ++.||..|+++|+.+.. ...++.|+.+++++++.||..|+++|..+.
T Consensus 807 --------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 --------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred --------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 1235688889888 99999999999987742 235688999999999999999999999972
Q ss_pred CCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897 322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 362 (454)
Q Consensus 322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~ 362 (454)
.++. ..+.|...+++.++.|+..+..+|..
T Consensus 867 --~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 867 --GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred --CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2332 35667788999999999999988863
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.61 E-value=3.8e-13 Score=138.89 Aligned_cols=276 Identities=17% Similarity=0.197 Sum_probs=217.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
..++.|+..|.+++ +.+|..|+..|..+.. .+.++.|...|+++++.+|..++..|..+....+
T Consensus 621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 35778999999999 9999999999998753 3468999999999999999999999988853222
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
..+.+...| +++++.++..++.+|..+.... ...++..|.++++.++..++.+|..+-.
T Consensus 685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 124566677 5688999999999998875321 2456788999999999999999987521
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
.+.|..++.++++.+|..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|+.+
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL 802 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence 2346678999999999999999998865322 2367888999998 899999999999988
Q ss_pred hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897 279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358 (454)
Q Consensus 279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~ 358 (454)
.... ..++.+...+.++++.||..|+++|..+... ..++.|..+++++++.|+..+.+
T Consensus 803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235688889999999999999999877431 24688999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417 (454)
Q Consensus 359 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (454)
+|..+ . .+ ....+.|...+++++++|+..|...|+.
T Consensus 861 aL~~~-~-~~---------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRW-P-GD---------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhcc-C-CC---------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99986 1 11 0113567788889999999999988763
No 32
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.6e-14 Score=132.26 Aligned_cols=315 Identities=18% Similarity=0.194 Sum_probs=222.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC----ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG----ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
.++|.|+++|.+++....+-|..+|..+|.+++..-+.-.... .++.++++. +++++.+|..|+.++-.+.-...
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 4689999999999999999999999999988765433211111 467777777 77899999999999988876654
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
..-......++..+..+-.+.+++||...|.++..+....++....-+. ++++.+++..++.++.|...||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 4445556788899999999999999999999999998776655444443 788888888899999999999999999987
Q ss_pred cCccchhhhhc--cCChHHHHHhhcCCc----------------------------------------------------
Q 012897 238 GDDFQTQCIIT--YGALPYLLGLLTHSH---------------------------------------------------- 263 (454)
Q Consensus 238 ~~~~~~~~~~~--~~~l~~L~~~L~~~~---------------------------------------------------- 263 (454)
.. -....+.. ..++|.|++-|....
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 54 22222221 145555555442110
Q ss_pred ---chhHHHHHHHHHHHHhcCCHHHHHHHHhCCC----hHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897 264 ---KKSIKKEACWTISNITAGNRDQIQAVIDAGL----VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG 336 (454)
Q Consensus 264 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (454)
+..+|+-.+.+|.-++. +....+ +|.|-+.|.++++.+|+.+..|++.++.++-.-..+++- .
T Consensus 365 ~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--e 434 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--E 434 (885)
T ss_pred ccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--H
Confidence 02233333333333322 222333 455555556678999999999999999976554444443 3
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (454)
+++.|+.+++++.+-||..++|.|++..+.-..... ..-|... ++.|.+..-+.|.+||+.|.....
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~-------~~~f~pv------L~~ll~~llD~NK~VQEAAcsAfA 501 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR-------DEYFKPV------LEGLLRRLLDSNKKVQEAACSAFA 501 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh-------HhhhHHH------HHHHHHHHhcccHHHHHHHHHHHH
Confidence 789999999999999999999999999775544321 1112333 334455566788999999999888
Q ss_pred HhcCcC
Q 012897 417 TYWLEE 422 (454)
Q Consensus 417 ~~~~~~ 422 (454)
++-++.
T Consensus 502 tleE~A 507 (885)
T KOG2023|consen 502 TLEEEA 507 (885)
T ss_pred HHHHhc
Confidence 775433
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.59 E-value=2.6e-13 Score=117.01 Aligned_cols=239 Identities=19% Similarity=0.199 Sum_probs=184.8
Q ss_pred hhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 164 VRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 164 ~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
..+-++.++.+|+. .|+.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|++++.|++...+..
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35677899999984 6899999999999998765 455677888999999999999999999999999999999765433
Q ss_pred hhhhhccCChHHHHHhh-cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 243 TQCIITYGALPYLLGLL-THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
. .++ ..++.+.+.. ..+.+..++..+..+|.|++..+.. ..++ .+.++.++.++..++..+|..++++|.|++
T Consensus 89 -~-~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 -E-QIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -H-HHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 2 233 2455555543 3333678999999999999864322 2333 347999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhhhh-hccCCcccccHHHHHHHHhc-cHHHHHH
Q 012897 322 SGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEK-NMGTATADVNQYAQLVEEAE-GLEKIEN 398 (454)
Q Consensus 322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-~~~~l~~ 398 (454)
. ++.....++..+++..++.+++.. +.++...++..+.|+-+.-.+.. ...++.+..+.....|.+.+ .-++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 8 678888999999999999999976 56788889999999965433321 11111114444567788777 6788999
Q ss_pred HhcCCCHHHHHHH
Q 012897 399 LQSHDNNEIYEKA 411 (454)
Q Consensus 399 l~~~~~~~v~~~a 411 (454)
+.+|++++|+.++
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999875
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=2.9e-13 Score=116.77 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=163.2
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897 36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
.+.+-++.|+.+|+...+|.+++.++.++++.+. .+..++.+.+.|+++.+..++.++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 4556689999999987669999999999999887 88999999999999999999999999999999999999986554
Q ss_pred hHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 116 CRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
.+..+.. .++.+++.... .-+..++..++.+|.+|+..... .......+|.++.+|.+++..++.+++++|.|++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 4444332 46666665433 34788999999999999876433 2234568999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhccC
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 239 (454)
.+.. ....++..+++..++.++... +.++...++..+.|+..+-
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 8755 457788889999999999775 6788999999999997643
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=3.4e-12 Score=126.06 Aligned_cols=321 Identities=19% Similarity=0.205 Sum_probs=206.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.++|...+.-+.-++..+.... +..-.+ +++.+.+-|.+++ +.++..|++++++++. ++....
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~--~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~~---- 114 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED--PELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAEP---- 114 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS--HHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHHH----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc--hhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhhH----
Confidence 46677888999988888888887663 222222 4677888888888 8999999999999884 555444
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
+++.+.+++.++++.+|..|+.++.++....|..- ... .++.+.+++ .+.++.++..|+.++..+ ...+....
T Consensus 115 -l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 115 -LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp -HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 36888888999999999999999999986555421 111 377788888 778899999999999998 22111111
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
......++.+.+++...++..+..++..+..++...+..... ..+++.+..++.+.++.+...++.++..+.....
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence 344566667777778888999999999998888765544311 3456666666666677777777777776654222
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHh
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNA 320 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l 320 (454)
.-..+++.+..++.++ ++.+|..++..|..++...+... . .....+..+. +++..+|..++..|..+
T Consensus 264 -----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 264 -----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp -----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred -----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence 1224566777777766 77777777777777776442221 1 1222223333 55667777777777777
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhcc-CCCCHHHHHHHHHHHHHHHHh
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLF-VCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l-~~~~~~v~~~al~~L~~l~~~ 366 (454)
+.. ..... +++.|...+ +..+++++..++..+..+...
T Consensus 332 ~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 332 ANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp --H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred ccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 642 22222 344555555 333555555555555555443
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.48 E-value=1.3e-12 Score=101.47 Aligned_cols=119 Identities=36% Similarity=0.614 Sum_probs=110.2
Q ss_pred HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897 34 EVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 113 (454)
Q Consensus 34 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 113 (454)
.+++.|+++.+++++.+++ +.++..++++|.+++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3678899999999999998 899999999999999977999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897 114 PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 114 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (454)
+..+..+...|.++.+++.+ .+.+.+++..++++|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888899999999999 66688999999999999873
No 37
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.48 E-value=3.6e-11 Score=112.04 Aligned_cols=361 Identities=17% Similarity=0.155 Sum_probs=238.9
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897 45 VEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS 122 (454)
Q Consensus 45 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 122 (454)
+.-+.+.+ |+..-.|..-..|.+.+.+.....+++.|.++.++.+++. +.++.....+.++..+..........+.+
T Consensus 15 l~~L~~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 15 LYRLLHLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHhhhcCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 33445556 6777788888888888888888899999999999999986 45677766777777777665566777888
Q ss_pred cCChHHHHHHhchhhh-hhHHHHHHHHHHhhcCCCCCCCh---hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 123 QGALIPLLAQLNERAK-LSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 123 ~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
...++.+++++ .+++ ..++...+.++..+....+.... .....+++.+..++..+...+...-+....+++...
T Consensus 94 ~~~ll~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~- 171 (678)
T KOG1293|consen 94 IIELLKLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK- 171 (678)
T ss_pred HhhHHHHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-
Confidence 88899999999 5555 88999999999999887643333 233556666666665455555555555555555444
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHh---HhhccCccchhhhh----ccCCh-------------------
Q 012897 199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG---NIVTGDDFQTQCII----TYGAL------------------- 252 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~l------------------- 252 (454)
.....+.+.++.+.+.-++..-+..+|.+|+.+++ ++...++.....+. +.++.
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 33345566666666666665555556666666666 44333321111110 00000
Q ss_pred ----------------------------------------------------------------------------HHHH
Q 012897 253 ----------------------------------------------------------------------------PYLL 256 (454)
Q Consensus 253 ----------------------------------------------------------------------------~~L~ 256 (454)
+...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 0000
Q ss_pred HhhcC---------------------------------------------------CcchhHHHHHHHHHHHHhcCCHHH
Q 012897 257 GLLTH---------------------------------------------------SHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 257 ~~L~~---------------------------------------------------~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
+++.. ..+..++..|+.++.++++.-...
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 002233344444444444321111
Q ss_pred HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
...+-...++.+|++++..++..++..+..+|+|+.-.-. .....++..|+++.+.+++.+.++.++..++|+|++++-
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 1112245678899999999999999999999999977533 445778899999999999999999999999999999986
Q ss_pred hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897 366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
.++...+ ..+-.-=+...|..+.++++..|++.+-.+++++...
T Consensus 491 ~~de~~k------------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 491 NCDEEEK------------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cchHHHH------------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 6554432 2222222245677889999999999999999987755
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.47 E-value=2.6e-11 Score=119.82 Aligned_cols=348 Identities=19% Similarity=0.225 Sum_probs=247.1
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
+..-+..+++.+..+...+ .+. .-+.+.+++++.+.+ ...+..+...+..+...+++.... +++.+.
T Consensus 19 ~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~ 85 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL-----IINSLQ 85 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH-----HHHHHH
Confidence 6777787887777765553 211 146788899999877 899999998999988866663322 478888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchH
Q 012897 89 KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 168 (454)
Q Consensus 89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 168 (454)
+-|.++++.+|..|++++++++ .++.... .++.+.+++ .++++.||+.|+.++..+....+. ..... ++
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~ 154 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPD--LVEDE-LI 154 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHH--HHHHH-HH
Confidence 8899999999999999999996 3333333 366777777 788899999999999999876432 11112 68
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897 169 PALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 248 (454)
Q Consensus 169 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 248 (454)
+.+..++.+.++.++..|+.++..+ ...+.....+. ..++..+.+++...++-.+..+++++..++...+.....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--- 229 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--- 229 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---
Confidence 9999999999999999999999999 33332211122 245666777778888999999999999988755533311
Q ss_pred cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897 249 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 328 (454)
Q Consensus 249 ~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (454)
..+++.+..++.+. ++.+..+++.++..+....+ .-..+++.|..++.++++.++..++.+|..++... +..
T Consensus 230 ~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~ 301 (526)
T PF01602_consen 230 NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPA 301 (526)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHH
T ss_pred HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chh
Confidence 35778899999888 99999999999998875432 12346888999999999999999999999998864 221
Q ss_pred HHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHH
Q 012897 329 IKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNE 406 (454)
Q Consensus 329 ~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~ 406 (454)
+. ........+. ++++.++..++..|..+..... +... ++.|.... +..+++
T Consensus 302 ---v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n--------------~~~I------l~eL~~~l~~~~d~~ 355 (526)
T PF01602_consen 302 ---VF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESN--------------VKEI------LDELLKYLSELSDPD 355 (526)
T ss_dssp ---HG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH--------------HHHH------HHHHHHHHHHC--HH
T ss_pred ---hh---hhhhhhheecCCCChhHHHHHHHHHhhcccccc--------------hhhH------HHHHHHHHHhccchh
Confidence 11 2223333444 7889999999999999985432 2222 33344444 454666
Q ss_pred HHHHHHHHHHHhc
Q 012897 407 IYEKAVKILETYW 419 (454)
Q Consensus 407 v~~~a~~~l~~~~ 419 (454)
++..+...+..+.
T Consensus 356 ~~~~~i~~I~~la 368 (526)
T PF01602_consen 356 FRRELIKAIGDLA 368 (526)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH
Confidence 7666666555433
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.47 E-value=1.5e-10 Score=114.62 Aligned_cols=365 Identities=14% Similarity=0.103 Sum_probs=209.5
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++++.++|.+++.-....+.+.+... ++.. .+ .++.|.+-+++++ |.+|..|+++++++-. ++....
T Consensus 74 vk~~~S~d~elKKLvYLYL~~ya~~~-pela-lL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~---- 140 (746)
T PTZ00429 74 VKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY---- 140 (746)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH----
Confidence 34556666666666666666665442 1111 11 3566677777777 7888888877777664 333222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
+++.+.+.+.+.++-||..|+.++.++....+. .+...+.++.+.+++ .+.++.|..+|+.+|..+....+. ..
T Consensus 141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l 214 (746)
T PTZ00429 141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KI 214 (746)
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hh
Confidence 356667777788888888888888888655442 333445667777776 677888888888888888765432 23
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD- 240 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~- 240 (454)
......+..++..+..-++..+...+.+|....-...... ..++..+...|++.++.|...|++++.++....+
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 3445566666677766677777777777765432222111 2567778888899999999999999998875432
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------h-C--
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-------------------------D-A-- 292 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-------------------------~-~-- 292 (454)
.....+. ..+...++.++ +. ++.++..++..+.-+....+.....-+ + .
T Consensus 290 ~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv 366 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVA 366 (746)
T ss_pred HHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccH
Confidence 1111111 01223444443 44 566777777666555443332211100 0 0
Q ss_pred -CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897 293 -GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 293 -~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~ 371 (454)
.++..|.+...+.+.+++..+..+++.++..-+ .. ...++..|+++++.+.. +...++..+.++++..++
T Consensus 367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~-- 437 (746)
T PTZ00429 367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE-- 437 (746)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc--
Confidence 122333333334456666667777766665322 11 12356666666654433 333456666666553221
Q ss_pred hccCCcccccHHHHHHHHhccHHHHHHH---hcCCCHHHHHHHHHHHHHhcC
Q 012897 372 NMGTATADVNQYAQLVEEAEGLEKIENL---QSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~ 420 (454)
.+ .+..|... ..-.+++.+....|++..|-+
T Consensus 438 ----------~~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 438 ----------LL--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred ----------HH--------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 01 12223221 233556677777888888754
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.47 E-value=9.1e-11 Score=107.95 Aligned_cols=322 Identities=15% Similarity=0.182 Sum_probs=228.7
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 82 GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 82 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.++..++.++.. ..+++.+..+..+..+....+.....+.+. +...+++.++ ..++.-+...++.++..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 467778888876 668899999999999988777655555443 4677888888 566888999999999999876
Q ss_pred CCCCCh-hhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHH
Q 012897 156 KPQPPF-DQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRT 231 (454)
Q Consensus 156 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~ 231 (454)
.+.... .....+++.+...+.+. +...+.-++.++..+......+ ..+.+.++++.|+.+|+.. ..+++..++.|
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 532211 12223445556666654 4667778889999998776654 5677788999999999763 45788999999
Q ss_pred HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC------HHHHHHHHhCCChHHHHHHhhhc
Q 012897 232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN------RDQIQAVIDAGLVGPLVNLLQNA 305 (454)
Q Consensus 232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~i~~L~~ll~~~ 305 (454)
++-++...+ ........++++.++.+++.....++-+-++.++.|+...+ ......+++.|+.+.+-.+-..+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999997554 44555667999999999988768889999999999999732 22334556666665444443332
Q ss_pred --chhhHHHHHHH-------HHHhcCCC------------------C----HHHHHHHHHcC--CcHHHhhccC-CCCHH
Q 012897 306 --EFDIKKEAAWA-------ISNATSGG------------------T----HEQIKYLVREG--CIKPLCDLFV-CPDPR 351 (454)
Q Consensus 306 --~~~v~~~a~~a-------L~~l~~~~------------------~----~~~~~~l~~~~--~i~~L~~~l~-~~~~~ 351 (454)
|+++....-.. +..++... + .++...+.+++ +++.|+++++ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 55544222111 11111100 1 12334444443 4788999985 56788
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 352 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 352 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
+...||.=++.+++..+. .+..+.+.|+-+.+.++++|+|++|+..|...++.++
T Consensus 370 ~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888899999999987544 3667889999999999999999999999999998775
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.46 E-value=4.3e-10 Score=111.47 Aligned_cols=287 Identities=15% Similarity=0.102 Sum_probs=201.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.|++.+...+..|++.+...+... .+.. .+++.+++++.+++ ..++......+.+++...++..-.
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL----- 105 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL----- 105 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH-----
Confidence 4567788888888988877776554 2322 24667888999888 899999999999998855554322
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
.++.+.+=+.++++.+|..|+++++.+.. +...+. .+..+.+.+ .+.++.||+.|+.++..+....+ ...
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~p--elv 175 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDM--QLF 175 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCc--ccc
Confidence 47888888899999999999999999842 222222 255666677 78899999999999999987644 233
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
...++++.+..++.+.++.|+.+|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|.... +..
T Consensus 176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~ 250 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSD 250 (746)
T ss_pred cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC
Confidence 3457888899999999999999999999999876554322 23355677777777666666667777775432 222
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
.... ..++..+...|++. ++.|.-+|+.++.++... .++....+. ..+-+.++.+ .+++++++..++..|..++
T Consensus 251 ~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 251 KESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred cHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 1111 25678888889998 899999999999988753 233332222 1223445555 3456677777776665555
Q ss_pred C
Q 012897 322 S 322 (454)
Q Consensus 322 ~ 322 (454)
.
T Consensus 326 ~ 326 (746)
T PTZ00429 326 V 326 (746)
T ss_pred H
Confidence 4
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.7e-11 Score=114.01 Aligned_cols=260 Identities=18% Similarity=0.170 Sum_probs=207.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
+..|++-|+...++..+.+|+.-|+.+.. ++++....+--..++|.|+.+|++ .+.++.-.|+++|.++|...|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 55666667766348888888877777554 666666666556789999999997 5699999999999999988888888
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT- 197 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~- 197 (454)
.+++.+.++.++..|..-.-.++.++++.+|..+++.. .......|.+...+.+|+--...+++.|+.+..|+|..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999877778899999999999999874 445556788889999998888899999999999999652
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC---ccchhhhhccCChHHHHHhhcCCc---chhHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD---DFQTQCIITYGALPYLLGLLTHSH---KKSIKKEA 271 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~~L~~~~---~~~v~~~a 271 (454)
++....++ +.+|.|..+|++.+....+.++.|+..++... +...+.+...+.+....+++.-.+ +..+....
T Consensus 327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 23334444 57999999999999999999999999998754 344556777888888888886441 23455667
Q ss_pred HHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh
Q 012897 272 CWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 304 (454)
Q Consensus 272 ~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 304 (454)
...+..++++++.....+.+.++...|..++..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 778888888888888888888888888877753
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=2.4e-12 Score=100.02 Aligned_cols=118 Identities=37% Similarity=0.535 Sum_probs=109.0
Q ss_pred HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCH
Q 012897 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR 283 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~ 283 (454)
+.+.|+++.++.++.++++.++..++++|++++...+.....+.+.++++.++++|.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998777888888889999999999998 99999999999999999877
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 284 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 284 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
.....+.+.|+++.+++++...+..+++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777778889999999999999999999999999999863
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.42 E-value=8e-11 Score=108.32 Aligned_cols=313 Identities=12% Similarity=0.078 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHH-----cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQ-----SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
..++++....+..+..++... +.....+.+ ......++.+|.+++ ..+...|+.+|..+....+.........
T Consensus 65 ~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~~~~~~l~ 142 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAKMEGSDLD 142 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccccchhHHH
Confidence 355777777777777777764 333444444 356777888998888 8999999999999986443322111111
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-hhhHHHHHHHHHHhhcCCCCCC
Q 012897 82 GAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 82 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
-.++.+...++++ +...+..++.++..+.... .+|..+.+.++++.|+.++.... +..++..++.+++-|+.+.+..
T Consensus 143 ~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~ 221 (429)
T cd00256 143 YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAA 221 (429)
T ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHH
Confidence 1345566666654 4777888889999987554 58888888889999999996544 6789999999999999886544
Q ss_pred ChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhcCC--CCCcchhh---
Q 012897 160 PFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGT------NDKIQAVIEAGVCPRLVELLGH--PSPSVLIP--- 227 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~--- 227 (454)
......++++.++.+++. ..+++.+-++.++.|+.... ......++..++.+.+-.+... .++++...
T Consensus 222 ~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~ 301 (429)
T cd00256 222 EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKF 301 (429)
T ss_pred HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHH
Confidence 444447899999999975 47889999999999998643 1233446665665544444322 34433221
Q ss_pred -------HHHHHhHhh-----------ccCccc-hhhh--------hcc--CChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 228 -------ALRTVGNIV-----------TGDDFQ-TQCI--------ITY--GALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 228 -------a~~~L~~l~-----------~~~~~~-~~~~--------~~~--~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
...-++++- .-+|.. .+.+ .+. .+++.|..+|..+.++.+..-||.-++.+
T Consensus 302 L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~ 381 (429)
T cd00256 302 LTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEY 381 (429)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHH
Confidence 112222111 001111 1112 222 35788999996554888889999999999
Q ss_pred hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+...|..+..+-+.|+=..+++++.+++++||.+|+.|+..+..
T Consensus 382 vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 382 VRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99878877777788999999999999999999999999988754
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.1e-11 Score=115.19 Aligned_cols=356 Identities=14% Similarity=0.093 Sum_probs=230.8
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCC
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGA 83 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 83 (454)
.|.+..|...-.|+.++..++..+ -+ .. ...++++.|+..........+++.++.+++.+|.+-....-.-....+
T Consensus 98 tL~~~ep~~~s~Aaq~va~IA~~E-lP-~n--~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i 173 (859)
T KOG1241|consen 98 TLGSPEPRRPSSAAQCVAAIACIE-LP-QN--QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI 173 (859)
T ss_pred HcCCCCCCccchHHHHHHHHHHhh-Cc-hh--hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence 455666666667777777776664 11 11 124567777777777763469999999999999833222111122457
Q ss_pred hHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh-HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-
Q 012897 84 VPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL-IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP- 159 (454)
Q Consensus 84 i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~- 159 (454)
+..++.-... ++..+|-.|+.+|.|-......+-..-.+.+.+ +...+. .++++.+++..|..+|..+..-....
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778887765 678999999999988653221111111122222 222222 26789999999999999887542111
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH---------------HHHHH---HhCcHHHHHHhcCC--
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK---------------IQAVI---EAGVCPRLVELLGH-- 219 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---------------~~~~~---~~~~i~~L~~ll~~-- 219 (454)
..-+....+..-+..+.+++++|...++..-+++|...-+. ...+. -.+++|.|+.+|..
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 11112335555566677999999999999999888532210 01111 12577888888854
Q ss_pred -----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-HHHHHHHHhCC
Q 012897 220 -----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVIDAG 293 (454)
Q Consensus 220 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~ 293 (454)
.++....+|-.||.-++...... ++. .+++.+-.-++++ +..-|..|+.+++.+..+. +....+++ .+
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV-~q 406 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV-IQ 406 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH-hh
Confidence 23567788888887777543321 222 4555555667788 9999999999999999864 44444444 67
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~ 371 (454)
.+|.++.++.++...++..+.|+++.++................+..++.-++ +.|.+...++|++.++.+...+.-
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAA 483 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998889999999999999998754332222222334445544444 678899999999999997655443
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.28 E-value=5.5e-11 Score=111.93 Aligned_cols=341 Identities=14% Similarity=0.117 Sum_probs=222.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+.-++++.+..|...+..+.++.........+.-.+...+..++..++.++. +.. ..+..++.++. .-..|-.-.-.
T Consensus 722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt-~d~-vml~gfg~V~~-~lg~r~kpylp 798 (1172)
T KOG0213|consen 722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT-EDS-VMLLGFGTVVN-ALGGRVKPYLP 798 (1172)
T ss_pred hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-chh-hhhhhHHHHHH-HHhhccccchH
Confidence 3456788888888888888888776533334444445566667777776652 211 12223333332 00011111112
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ 158 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 158 (454)
.++..++..|+++++.+|.+++..++.++.--..+.+ .+-..| ..|.+.+ ....+++.-..+.++..++... -.
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHHHHhcccc
Confidence 3567788899999999999999999988732222211 111112 2345555 6678899888888888877553 12
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897 159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 238 (454)
....-..+++|.|..+|++...+++.+++..++.++...++....---..+.-.|+.+|...+.++|.+|..+++.++..
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 22233478999999999999999999999999999988776433222223444577778888889999999999998852
Q ss_pred CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 318 (454)
+--..++..|+.-|+.. +.+.|.-...+++-.+..+. . -.++|.|+.=...++..|+.-.+.+++
T Consensus 956 -------IGPqdVLatLlnnLkvq-eRq~RvcTtvaIaIVaE~c~----p---FtVLPalmneYrtPe~nVQnGVLkals 1020 (1172)
T KOG0213|consen 956 -------IGPQDVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCG----P---FTVLPALMNEYRTPEANVQNGVLKALS 1020 (1172)
T ss_pred -------cCHHHHHHHHHhcchHH-HHHhchhhhhhhhhhhhhcC----c---hhhhHHHHhhccCchhHHHHhHHHHHH
Confidence 22234566666666655 44444433334443333211 1 246888888777788899999999999
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
.+...-..-...++.. +.+.|.+.+-+.|+.-++.+..++.++.-
T Consensus 1021 f~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 9987654444455444 67778888888888888888888888864
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.5e-09 Score=102.95 Aligned_cols=356 Identities=16% Similarity=0.169 Sum_probs=234.7
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 87 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 87 (454)
.+..+|+.|+.+|.+-+...+...-..+-+.-+++..++.-++++ .+++..|+.||.++..-.-+.....+....+..-
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait 264 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT 264 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998765532222334444556778888888888 9999999999999998666666666666777888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChh----------------hHH--HHHhcCChHHHHHHhch-hh-----hhhHHH
Q 012897 88 VKLLASPSDDVREQAVWALGNVAGDSPR----------------CRD--LVLSQGALIPLLAQLNE-RA-----KLSMLR 143 (454)
Q Consensus 88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~----------------~~~--~~~~~~~i~~l~~~l~~-~~-----~~~~~~ 143 (454)
+..++++++++.-+++...+++|...-. ... .-.-.+.+|.|+++|.+ ++ +-..-.
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 8888999999999999999999842111 000 01112467778888853 22 112344
Q ss_pred HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc
Q 012897 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS 223 (454)
Q Consensus 144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 223 (454)
.|..+|.-++... .......++|.+-.-++++|..-+..+..+++.+..........-+..+.++.++.++.++.-.
T Consensus 345 AAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 345 AAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHHh---cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 4444444444332 1122346777777888899999999999999999887665545455558999999999998888
Q ss_pred chhhHHHHHhHhhccCccchh-hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH-----HHh---CCC
Q 012897 224 VLIPALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA-----VID---AGL 294 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-----l~~---~~~ 294 (454)
++..+.|+++.++.+.++.+. .......+..++.-|. . .|.+-.++||++.+++.+..+.... ... ..+
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 999999999999987663321 1122245556666664 3 5788999999999998432221100 000 123
Q ss_pred hHHHHHHhhh---cchhhHHHHHHHHHHhcCCCCHHHHHHHHHc--CCcHHHhhccC-----CCC----HHHHHHHHHHH
Q 012897 295 VGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQIKYLVRE--GCIKPLCDLFV-----CPD----PRIVTVCLEGL 360 (454)
Q Consensus 295 i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~L~~~l~-----~~~----~~v~~~al~~L 360 (454)
+..|+...+. .+..+|..|..+|..+..+.+++....+.+. -.+..|-+.++ ..+ .+++...+.+|
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 4444444433 3678999999999999998776654443321 12233333332 222 24666667777
Q ss_pred HHHHHhhhh
Q 012897 361 ENILKVGEA 369 (454)
Q Consensus 361 ~~l~~~~~~ 369 (454)
..+.++...
T Consensus 580 q~i~rk~~~ 588 (859)
T KOG1241|consen 580 QSIIRKVGS 588 (859)
T ss_pred HHHHHHccc
Confidence 777765443
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=7.5e-09 Score=97.69 Aligned_cols=214 Identities=16% Similarity=0.183 Sum_probs=155.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+.+|++.-|-+|..|...+.++.-.- ++..+ ..+|.|++-|.+++ |.++..|+.+++.++..+|.+.-.
T Consensus 150 ~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~---- 218 (877)
T KOG1059|consen 150 FTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ---- 218 (877)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc----
Confidence 34577888889999988888876553 22222 25889999999999 999999999999999877766433
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC
Q 012897 82 GAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP 159 (454)
Q Consensus 82 g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~ 159 (454)
.-|.+.++|.+ .|.=+....+..+++|+--.|..... .++++.+++....-..+...+..++..-+... ...
T Consensus 219 -LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 -LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred -ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 45778887764 33334445677888887666665555 47888888865555566666655554332111 113
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
......-+++.|--++.+.|+.++.-++.+++.+...++...+ ..-+.++.+|.+.++.+|..|+..+-.++.
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 3444566788888899999999999999999999988775544 234578899999999999999999888875
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.6e-08 Score=92.85 Aligned_cols=325 Identities=16% Similarity=0.165 Sum_probs=239.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSP--- 114 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~--- 114 (454)
.++.|++-+.+..-.+-|+.|+..|..++. +.|..+...| ++.|+..|+. .++++...++.++.++.+..+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 588999998887768889999999999987 6777776655 8889998876 679999999999999885442
Q ss_pred ---hh----------H-HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh---hhhhchHHHHHHhhcC
Q 012897 115 ---RC----------R-DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQVRPALPALAQLVHS 177 (454)
Q Consensus 115 ---~~----------~-~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~l~~ll~~ 177 (454)
.. . ..+...+.+..++..+ ...|-.||..++..+.++....+.... .....++..++.+|++
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 11 1 1234456788888888 778889999999999999887643222 2236788999999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC----CCcchhhHHHHHhHhhccCccchhhhhccCChH
Q 012897 178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP 253 (454)
Q Consensus 178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 253 (454)
..+.+|..++..|..++..++...+.+.=.+++..|+.++... ..-|...|+..|-|+...+......+.+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988876655555568999999999653 235788899999999998888888888999999
Q ss_pred HHHHhhcCCc--c-----hhH-----HHHHHHHHHHHhc-CCH-----HHHHHHHhCCChHHHHHHhhhc--chhhHHHH
Q 012897 254 YLLGLLTHSH--K-----KSI-----KKEACWTISNITA-GNR-----DQIQAVIDAGLVGPLVNLLQNA--EFDIKKEA 313 (454)
Q Consensus 254 ~L~~~L~~~~--~-----~~v-----~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a 313 (454)
.|.++|.... + +.. ...+..++..+.. +++ .+.+.+...+++..|+.++.++ ..+++..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998885321 1 111 1234455555554 221 2234566789999999999876 56788999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcC----------CcHHHhhccCCCC-HHHHHHHHHHHHHHHHhhhhh
Q 012897 314 AWAISNATSGGTHEQIKYLVREG----------CIKPLCDLFVCPD-PRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~----------~i~~L~~~l~~~~-~~v~~~al~~L~~l~~~~~~~ 370 (454)
..++.++.+++. .....+.+.. .+-.++.+..+.. +.+|.+++.|+..++......
T Consensus 338 iitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 999999988643 3333444311 1223444555544 578999999999888665543
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.5e-09 Score=91.72 Aligned_cols=190 Identities=20% Similarity=0.232 Sum_probs=158.8
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897 178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257 (454)
Q Consensus 178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 257 (454)
.+.+-+..++.-|..++.+-+. ...+...|+...++..+.+++..+|..|+++|+.++.+++.....+++.++++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 4566778888888888866543 456888899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 012897 258 LLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVRE 335 (454)
Q Consensus 258 ~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 335 (454)
++.+..+..+|..|.++++.+.+..+.....+...++...|.+.+++ .+..++..++..+..++.... .....+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence 99987577888999999999999888888888888889999999999 577888999999999988543 233344456
Q ss_pred CCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 336 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 336 ~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
++...+..+..+.+.++...++.++...+.....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7777788888888889999888888877765443
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.16 E-value=4.8e-09 Score=93.29 Aligned_cols=274 Identities=16% Similarity=0.144 Sum_probs=195.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
..|..+|+-+...+.+.+.++++... .........-....|-..++++.+++....+++||..+.. .++.|..++..+
T Consensus 121 ~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~ad 198 (442)
T KOG2759|consen 121 NLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIAD 198 (442)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecC
Confidence 45677888888889999999887652 2111100011233455666664447888889999999998 789999999999
Q ss_pred ChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 83 AVPIFVKLLA-S-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 83 ~i~~L~~lL~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
++..++..+. + .+..++-+.+.+++-|+.. |...+.+...+.++.|..++..+..+.|.+-++.++.|++...+...
T Consensus 199 g~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~ 277 (442)
T KOG2759|consen 199 GVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRE 277 (442)
T ss_pred cchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 9999999883 3 6789999999999999654 44556777888999999999888899999999999999998764322
Q ss_pred h------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHH-------hccC--------------Ch---------HHH
Q 012897 161 F------DQVRPALPALAQLVHS---NDEEVLTDACWALSY-------LSDG--------------TN---------DKI 201 (454)
Q Consensus 161 ~------~~~~~~l~~l~~ll~~---~~~~v~~~a~~~L~~-------l~~~--------------~~---------~~~ 201 (454)
. .+...-++..++.|.. +|+++....-..-.. ++.. +| ++.
T Consensus 278 ~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa 357 (442)
T KOG2759|consen 278 TKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENA 357 (442)
T ss_pred HHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhH
Confidence 2 1223333444444442 355543332222111 1110 00 111
Q ss_pred HHHHH--hCcHHHHHHhcCCC-CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 202 QAVIE--AGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 202 ~~~~~--~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
..+-+ ..++..|+.+|..+ +|.+..-||.=++.+++..|..+..+.+.|+=..++++|.++ +++||.+|..++..+
T Consensus 358 ~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 358 DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKL 436 (442)
T ss_pred HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 11222 14788899999765 588899999999999999998888888899999999999999 999999999998877
Q ss_pred hc
Q 012897 279 TA 280 (454)
Q Consensus 279 ~~ 280 (454)
..
T Consensus 437 m~ 438 (442)
T KOG2759|consen 437 MV 438 (442)
T ss_pred Hh
Confidence 64
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.2e-09 Score=91.40 Aligned_cols=187 Identities=21% Similarity=0.227 Sum_probs=158.7
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 85 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 85 (454)
.+.+++-+..|+..|..++.. .++...++..|++..++..+++++ +.+|..|+++++.++..+|.....+++.|+.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 456788899999999999977 788899999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHHHHHHHHHhhcCCCCCCC-hh
Q 012897 86 IFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPP-FD 162 (454)
Q Consensus 86 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~ 162 (454)
.|+..+.+ .+..++..|+.+++.+.+..+.....+...+++..|...+... .+...++.++..+..+........ ..
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999986 5577889999999999999888888888888899999999542 678899999999999998763333 33
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
...++...+..+....+.++...++.++..+..
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 334555566777777788888888887766553
No 53
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.13 E-value=1.1e-08 Score=91.00 Aligned_cols=309 Identities=14% Similarity=0.092 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHH-------HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEV-------IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
++.....+..+-.+++.. ...... .....-...+.+|.+.+ .-+...+.+++..++.........-...=
T Consensus 80 dd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la~~g~~~~~~~e~~~ 156 (442)
T KOG2759|consen 80 DDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLACFGNCKMELSELDV 156 (442)
T ss_pred HHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 455555555666666553 111111 11233567788888888 78888899999998873222111100001
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-chhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 83 AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 83 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
....|...+++ .+......++++|..+.... ++|..+...+++..++..+ ....+-.++.+.+.+++.|+.++....
T Consensus 157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae 235 (442)
T KOG2759|consen 157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE 235 (442)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence 23344445555 67788888999999997654 5888888888899999988 455578899999999999998875554
Q ss_pred hhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHH
Q 012897 161 FDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRT 231 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~ 231 (454)
.....+.++.|..++++. .++|.+-++.++.|++...+ .....++..++.+.+-.+... .++++....-..
T Consensus 236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455568899999999754 68899999999999997764 233345554554444444322 344433222111
Q ss_pred Hh-------Hhhcc--------------Cc---------cchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 232 VG-------NIVTG--------------DD---------FQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 232 L~-------~l~~~--------------~~---------~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
-. .++.. +| +....+.+ ..+++.|+.+|+...+|.+-.-||.-++.+.
T Consensus 316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV 395 (442)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence 11 11111 11 11111222 2468899999998867889999999999999
Q ss_pred cCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 280 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 280 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+..|+.+..+.+.|+=..++++++++|++||..|+.|+..+..
T Consensus 396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9989988888899999999999999999999999999988765
No 54
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.07 E-value=2.8e-08 Score=91.60 Aligned_cols=347 Identities=12% Similarity=0.043 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC----CChHH
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH----GAVPI 86 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~ 86 (454)
..+.+++..+..++.+..++..-.+...-++......++...+..+|..|+.+|.+-+. ..+..+... -+++.
T Consensus 149 ~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqv 225 (858)
T COG5215 149 SGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQV 225 (858)
T ss_pred HhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhhee
Confidence 55667777777777664221221111111223333445555557889999999887332 111112111 23455
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-----
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF----- 161 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~----- 161 (454)
.+..-+.++.+++..+..|+..+..-...+-+..++.-......+.+ ++++.++..++...-+.+|........
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 56666778999999999999998743333333333333233333444 778889999998888788765411111
Q ss_pred ------------hhhhchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897 162 ------------DQVRPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222 (454)
Q Consensus 162 ------------~~~~~~l~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 222 (454)
.....++|.|+++|... +..+-..|..||.-.+.... +.+++ .++..+-+-++++++
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~~w 380 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSESW 380 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCchh
Confidence 11356899999999752 44566677777766554322 22333 245555566788899
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 302 (454)
.-|+.+.-+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+. ..+-++..+...
T Consensus 381 ~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~ 456 (858)
T COG5215 381 ANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSAS 456 (858)
T ss_pred hhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHH
Confidence 9999999999999988776655556668889999999877 889999999999999865433222 223333333322
Q ss_pred hh---cchhhHHHHHHHHHHhcCCCCHHHH--H-HHHH--cCCcHHHhhccC--CCCHHHHHHHHHHHHHHHHhhhh
Q 012897 303 QN---AEFDIKKEAAWAISNATSGGTHEQI--K-YLVR--EGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 303 ~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~-~l~~--~~~i~~L~~~l~--~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
.- +.+.+..++.|...|+..+-.+... . .+.. ...+..|++.-+ ..+...|.....+|..++..+..
T Consensus 457 liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 457 LIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 21 3778889999999999875432210 1 1111 122333333222 23456777788888888776554
No 55
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8e-07 Score=87.68 Aligned_cols=331 Identities=15% Similarity=0.179 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHH----HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEE----VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 86 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~----~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 86 (454)
+-...++.+|.++++.. ++.... ..--|.++.+..++.....+.++..|+.++.-++. +.++...+.+.|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 35567899999999885 222221 12237788888888876658999999999988887 8899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---CCCChhh
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK---PQPPFDQ 163 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~ 163 (454)
|+.+|.+ -|..|+.++.+|..+++. ++......+.|++..+..++-...++..+.+++..+..+..++ +...+..
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9998875 478899999999999754 4566777888889888888877788999999999999999886 3333332
Q ss_pred hhchHHHHHHhhcC-------------CChh------HHHHHHHHHHHhccC--------------ChHHH---------
Q 012897 164 VRPALPALAQLVHS-------------NDEE------VLTDACWALSYLSDG--------------TNDKI--------- 201 (454)
Q Consensus 164 ~~~~l~~l~~ll~~-------------~~~~------v~~~a~~~L~~l~~~--------------~~~~~--------- 201 (454)
....-..++..+++ .+|+ .+...-..+..++.. -+++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 22222233333332 1222 222222233332210 00000
Q ss_pred --------HHHH-------------HhCcHHHHHHhcCCCCCc--chhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897 202 --------QAVI-------------EAGVCPRLVELLGHPSPS--VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258 (454)
Q Consensus 202 --------~~~~-------------~~~~i~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 258 (454)
+.++ -.++++.+..++..++++ ....-..++..+.+..+.....+-..|.+|.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0010 013555666666554433 22333344455556667677777788999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897 259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 338 (454)
Q Consensus 259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 338 (454)
+... +..+-..|..+|..++.. .-+...+.....+..++..++. .+....-|+.+|..+......+........|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 9777 666778899999988753 5566666666677777777664 345566899999999887666777777889999
Q ss_pred HHHhhccCCC
Q 012897 339 KPLCDLFVCP 348 (454)
Q Consensus 339 ~~L~~~l~~~ 348 (454)
+.|.++++..
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999999853
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.03 E-value=2.8e-09 Score=96.90 Aligned_cols=228 Identities=21% Similarity=0.263 Sum_probs=156.5
Q ss_pred ChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh------cCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897 83 AVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS------QGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 83 ~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (454)
....++.+|. +.++++....+..+..+..+.+...+.+.. .....++++++ ..+|..+...++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 3555555555 367999999999999999887765555444 23578888877 66699999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-----CC--CCCc
Q 012897 155 GKPQPPFDQVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----GH--PSPS 223 (454)
Q Consensus 155 ~~~~~~~~~~~~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~ 223 (454)
..+........+.++.++.++.+ ++.+++..++.++.++.... .....+.+.++++.+..++ .+ ...+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 87665555445666767666654 45667899999999998664 4557788889999999999 22 3467
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH-HHHHHHhCCChHHHHHHh
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-QIQAVIDAGLVGPLVNLL 302 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll 302 (454)
++..++.|++.++.. ++....+.+.++++.+..+++.....++.+-+..++.|+....++ ....++..++++.+-.+.
T Consensus 214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 889999999999974 446667777789999999998776889999999999999985443 666777776666655555
Q ss_pred hhc--chhhHHHH
Q 012897 303 QNA--EFDIKKEA 313 (454)
Q Consensus 303 ~~~--~~~v~~~a 313 (454)
..+ |+++....
T Consensus 293 ~rk~~Dedl~edl 305 (312)
T PF03224_consen 293 ERKWSDEDLTEDL 305 (312)
T ss_dssp SS--SSHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 443 66666543
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.7e-07 Score=89.89 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=101.0
Q ss_pred HHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897 213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 292 (454)
Q Consensus 213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 292 (454)
|-++|.+.+..+|.-++..|.......+...+ .--..++.+|+++ +..+|+.|...+-.+... .++..
T Consensus 318 LgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~---- 385 (866)
T KOG1062|consen 318 LGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV---- 385 (866)
T ss_pred HHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH----
Confidence 33344444444444444444444433322111 2234688889999 999999999888888753 33333
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh-hhhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG-EAEK 371 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~-~~~~ 371 (454)
++..|+.+|...+++.+...+.-+..++..-.++.+= .+..+...++..-.-|..-+...+..++..+ ....
T Consensus 386 -mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~ 458 (866)
T KOG1062|consen 386 -MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH 458 (866)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh
Confidence 4566888888889999998888888887755443321 2556666666655555555555555555443 2221
Q ss_pred hccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 372 NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 372 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
.. ....+...+.+ ..++..+.+.+.+-|.|+|.+|-+
T Consensus 459 ~y-----~~~rLy~a~~~-------~~~~~is~e~l~qVa~W~IGEYGd 495 (866)
T KOG1062|consen 459 EY-----AVLRLYLALSE-------DTLLDISQEPLLQVASWCIGEYGD 495 (866)
T ss_pred hH-----HHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHhhhhhH
Confidence 10 01111111111 113445556668888999988874
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.03 E-value=8e-10 Score=102.29 Aligned_cols=265 Identities=17% Similarity=0.146 Sum_probs=182.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR--DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
-++..++..|+++.+.+|..++...+.|+.--..+. +.+...| ..|.+.+ ....+++.-..+.+++.+.......
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 367788889999999999999998888763211111 1222222 2244444 5667888888888888877554222
Q ss_pred C-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897 160 P-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 160 ~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 238 (454)
. ..-..+++|.+..+|++...+++.+.+..++.++...++.+..---..+.-.|+..|.+.+.++|.+|..+++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 2 223478999999999999999999999999999988776433221223444577778888999999999999988752
Q ss_pred CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 318 (454)
+--..++..|+.-|+.. +.+.|.-...+++-.+..+. --.++|.|+.=...++..|+.-.+.+++
T Consensus 761 -------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 -------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred -------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 22224566777777665 54444444444444433111 1246777777777778889999999999
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
.+...-......++.. ..+.|.+.+.+.|+.-++.+...+.++.-.
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 9988655555555554 567777788889998888888888888654
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=8.9e-08 Score=91.84 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=82.6
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhh
Q 012897 166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
-.+..|-++|.+.|..+++-++..|..+...++...+ ..=..++.+|++++..++..|+..+-.++..+ ...
T Consensus 313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~- 384 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRSTILECLKDPDVSIKRRALELSYALVNES--NVR- 384 (866)
T ss_pred HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHH-
Confidence 3456777888888888888888888888877665433 22356899999999999999999988887533 333
Q ss_pred hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHH
Q 012897 246 IITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQ 287 (454)
Q Consensus 246 ~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~ 287 (454)
..++.|+..|.+. +++++...+.-+..++. ..|+.++
T Consensus 385 ----~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 385 ----VMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred ----HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh
Confidence 3456899999988 99999999988888886 3444433
No 60
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.01 E-value=3.8e-07 Score=86.78 Aligned_cols=379 Identities=14% Similarity=0.124 Sum_probs=230.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcCCCchhh
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENT 75 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~ 75 (454)
+...++|.+.+...++.+.+++... ......+...++|.+....... ++..+...+..+-
T Consensus 643 rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia----------- 709 (1172)
T KOG0213|consen 643 REFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIA----------- 709 (1172)
T ss_pred HhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHH-----------
Confidence 4457889999999999999988774 4445567777788777654322 1122222222221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhh
Q 012897 76 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 76 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l 152 (454)
..+.....+..++.-+.+.++..|...+.++.++...-. ..-..+ +...+..++..++ ++....+.-....++.+-
T Consensus 710 ~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 710 AKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred HHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 222223345666666777888888888877777653221 111111 1123455555553 233344555555555554
Q ss_pred cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897 153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 229 (454)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 229 (454)
... ........++..++..|++..+.++..++..++.++.- ..+. +.+...| -.|...|....+++.-..+
T Consensus 789 lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~lG--vvLyEylgeeypEvLgsIL 862 (1172)
T KOG0213|consen 789 LGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLG--VVLYEYLGEEYPEVLGSIL 862 (1172)
T ss_pred Hhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhh--HHHHHhcCcccHHHHHHHH
Confidence 322 22334456777888999999999999999999887632 1111 1122223 2466777778888887777
Q ss_pred HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH--HHHHhCCChHHHHHHhhhcch
Q 012897 230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI--QAVIDAGLVGPLVNLLQNAEF 307 (454)
Q Consensus 230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~ 307 (454)
.+|..++..-.-.+..---.+++|.|..+|++. +.+++.++...++.++...++.+ +++. .+--.|+++|++.+.
T Consensus 863 gAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWM--RIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWM--RICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHHHHHHHH
Confidence 766666542211111111237899999999999 99999999999999997544421 1121 123347788888889
Q ss_pred hhHHHHHHHHHHhcCCCCHHHH-HHHHH-----------------------c---CCcHHHhhccCCCCHHHHHHHHHHH
Q 012897 308 DIKKEAAWAISNATSGGTHEQI-KYLVR-----------------------E---GCIKPLCDLFVCPDPRIVTVCLEGL 360 (454)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~-~~l~~-----------------------~---~~i~~L~~~l~~~~~~v~~~al~~L 360 (454)
++|.+|...++.++..-.+... ..+.+ + .+++.|+.-...++..|+.-++.++
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence 9999999999998875433221 11111 1 2456666666677888999999999
Q ss_pred HHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 361 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
..++.+-.+..+. |.-. ..+.|+.-+.+.+..=++.|..++..+
T Consensus 1020 sf~Feyigemskd---------Yiya-----v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKD---------YIYA-----VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHHHHHHHhhh---------HHHH-----hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 9999876654432 2211 124444445555555555555555544
No 61
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=5.9e-08 Score=93.00 Aligned_cols=336 Identities=17% Similarity=0.174 Sum_probs=225.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+++...+|-+++.-+-..+.+.+... +.. ..+.++.+++=..+++ |.+|..|++.++.+-. +....
T Consensus 55 vk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e----- 120 (734)
T KOG1061|consen 55 VKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE----- 120 (734)
T ss_pred HhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----
Confidence 45666777788888888888887774 221 1245777877778888 8999998888777664 22222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 160 (454)
.+...+...+++.++.+|..+..+..++-..++ +.....|.+..|-.++ .+.++.|..+|+.+|..+....+. ..
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 246788889999999999999999999865443 5666778889999999 688999999999999999987653 33
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.......+..++..+..-+..-+...+.++.+..-.++.... .++..+...+.+.++.+...+...+.++.....
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 334455666666666666666666777777666544432222 456677888888888888888888888876444
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH-------------------------HHHHh-CC-
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI-------------------------QAVID-AG- 293 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~-------------------------~~l~~-~~- 293 (454)
... ..+-...-+.++.++.+. . .++.-+..-+.-+....++.. ..+.. .+
T Consensus 272 ~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl 348 (734)
T KOG1061|consen 272 QVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL 348 (734)
T ss_pred HHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence 322 222224555666666655 3 444444333332222222110 01111 11
Q ss_pred --ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 294 --LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 294 --~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
++..+......-+.+...++.+|+++++...... ++++..|.++++.+...+.+.++..+..++++.++.
T Consensus 349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 2222333333347788899999999998854321 578999999999888888888888999999876553
No 62
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.98 E-value=9.5e-08 Score=93.04 Aligned_cols=352 Identities=13% Similarity=0.120 Sum_probs=223.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.+.|-+.|..|+.-|.+=+... .-..+.--+..++..++++|.+.+ ++++..|+.|++-++..-++.+-.
T Consensus 11 lekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le---- 84 (1233)
T KOG1824|consen 11 LEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE---- 84 (1233)
T ss_pred HHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH----
Confidence 45678899999999999888766543 222333334467889999999999 999999999999999744443322
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh----ch-hhhhhHHHHHHHHHHhhcCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL----NE-RAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~~~~~a~~~L~~l~~~~ 156 (454)
..++.|+.-+-++-+..|..+.-.|......-++.........+.+.++..+ .. .+...++..++..+..+....
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 2355566654444555555444444333222222222222233333343333 22 233446777777776665543
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHh
Q 012897 157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNI 235 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l 235 (454)
...-.......+..+..-+.++-..++..++.+|+.++...+.. ++. +++..+..-|.. ..+.....-..+|+.+
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 22222244566777777788888999999999999998654422 222 556666666644 3445555667788888
Q ss_pred hccCccchhhhhccCChHHHHHhh---cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--------
Q 012897 236 VTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-------- 304 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-------- 304 (454)
++........-. ..+++.+.+.. ... +.++|+....++..+....+..+...+ ..++..+++.+..
T Consensus 241 ~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yisYDPNy~yd~ 317 (1233)
T KOG1824|consen 241 CRQAGHRFGSHL-DKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYISYDPNYNYDT 317 (1233)
T ss_pred HHHhcchhhccc-chhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHhccCCCCCCCC
Confidence 875543332211 25677888877 556 788999999999988876666553333 2233444433321
Q ss_pred --------------------------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897 305 --------------------------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358 (454)
Q Consensus 305 --------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~ 358 (454)
-++.||+.|+.++..+... ..+....+. ..+-+.++.-++..++.|+.-+..
T Consensus 318 ~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dvf~ 395 (1233)
T KOG1824|consen 318 EEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADVFH 395 (1233)
T ss_pred ccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHHHH
Confidence 0257999999999998874 334444433 356788999999999999888888
Q ss_pred HHHHHHHhhh
Q 012897 359 GLENILKVGE 368 (454)
Q Consensus 359 ~L~~l~~~~~ 368 (454)
++..+++.-.
T Consensus 396 ~yi~ll~qt~ 405 (1233)
T KOG1824|consen 396 AYIALLKQTR 405 (1233)
T ss_pred HHHHHHHcCC
Confidence 8888877543
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.9e-08 Score=95.03 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=102.8
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
..+.+|.+|..|++.+..+--. . +...+...+.+++++.+ +-+|..++-+..++-..+ .+.....|++
T Consensus 95 ~~d~np~iR~lAlrtm~~l~v~----~----i~ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~ 162 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLRVD----K----ITEYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLV 162 (734)
T ss_pred CCCCCHHHHHHHhhceeeEeeh----H----HHHHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchh
Confidence 4566777777776665544222 1 11235778999999999 999999999999888733 4556678999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
+.|..++.+.++.+..+|+.+|..+....+...........+..++..+ ..-++ -.-+.+|..++.+.+... .-.
T Consensus 163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al-~ec~E---W~qi~IL~~l~~y~p~d~-~ea 237 (734)
T KOG1061|consen 163 DALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL-NECTE---WGQIFILDCLAEYVPKDS-REA 237 (734)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH-HHhhh---hhHHHHHHHHHhcCCCCc-hhH
Confidence 9999999999999999999999999865542111111111233333333 11111 122233334444433333 222
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
..++..+...+.+.++.+...+...+.++.
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~ 267 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLV 267 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence 344445555555555555555555554444
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.95 E-value=2.8e-07 Score=85.22 Aligned_cols=351 Identities=17% Similarity=0.141 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 87 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 87 (454)
.+..+|+.|+++|..-+-.-+......--..-+++..++.-+.++ .+++..|..||.++..-.-.....+++.-.....
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999987321110011111112234566677777777 9999999999999987566666677776677777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHH----------------HHHhcCChHHHHHHhch-hh-----hhhHHHHH
Q 012897 88 VKLLASPSDDVREQAVWALGNVAGDSPRCRD----------------LVLSQGALIPLLAQLNE-RA-----KLSMLRNA 145 (454)
Q Consensus 88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----------------~~~~~~~i~~l~~~l~~-~~-----~~~~~~~a 145 (454)
...++++++++..+++...+.+|...-...- .....+++|-++++|.+ ++ +-.+-..|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 7888999999999999999888853211100 01123467888888853 22 22244444
Q ss_pred HHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcch
Q 012897 146 TWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVL 225 (454)
Q Consensus 146 ~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 225 (454)
..+|.-.+... .......++..+-.-+++++..-++.+..+++.+..........-+-...+|.+...+.++.-.++
T Consensus 349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 44444444332 112234455666667788888899999999999987765544444445778888888888888899
Q ss_pred hhHHHHHhHhhccCccchhhhhccCChHH-----HHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH---HHh---CCC
Q 012897 226 IPALRTVGNIVTGDDFQTQCIITYGALPY-----LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA---VID---AGL 294 (454)
Q Consensus 226 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-----L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~---l~~---~~~ 294 (454)
..++||++.++.+-. ..+-..+.++. ++.+.+ .+.+....+|...|+..+-++.... ++. ..+
T Consensus 426 ~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai 499 (858)
T COG5215 426 STTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAI 499 (858)
T ss_pred hHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHH
Confidence 999999999987543 22222233322 333333 4567788999999998754333211 110 112
Q ss_pred hHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHH---------cCCcHHHhhccCCCC----HHHHHHHHHH
Q 012897 295 VGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVR---------EGCIKPLCDLFVCPD----PRIVTVCLEG 359 (454)
Q Consensus 295 i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~i~~L~~~l~~~~----~~v~~~al~~ 359 (454)
+..|+...+ ..+...|..+..+|+.+....+......+.. ...+..+-+.+...| .+++...+..
T Consensus 500 ~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~v 579 (858)
T COG5215 500 LNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGV 579 (858)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 333333222 2366788888999999888765443332221 012233333333333 3455666666
Q ss_pred HHHHHHhhh
Q 012897 360 LENILKVGE 368 (454)
Q Consensus 360 L~~l~~~~~ 368 (454)
|..+++...
T Consensus 580 l~aiir~~~ 588 (858)
T COG5215 580 LEAIIRTRR 588 (858)
T ss_pred HHHHHHhcC
Confidence 666666543
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=3.4e-06 Score=81.10 Aligned_cols=343 Identities=12% Similarity=0.100 Sum_probs=220.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
..+...|..+|..|...|..+++..+.+..+.++ ..-++..|+.+|.+.. ..+|..++..|..++.+++...+.+.-.
T Consensus 129 ~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~IQKlVAFE 207 (970)
T KOG0946|consen 129 QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSIQKLVAFE 207 (970)
T ss_pred HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchHHHHHHHH
Confidence 3455678899999999999999887555555544 4577999999999999 8999999999999999999999998888
Q ss_pred CChHHHHHhhCCC----CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh--hh----------hhHHHHH
Q 012897 82 GAVPIFVKLLASP----SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--AK----------LSMLRNA 145 (454)
Q Consensus 82 g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~----------~~~~~~a 145 (454)
+++..|+.++... .--+.+.|+..|.||..++..+...+.+.+.++.|.++|... .+ ..-...+
T Consensus 208 NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~ 287 (970)
T KOG0946|consen 208 NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA 287 (970)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence 9999999999862 246888899999999998888999999999999999888421 11 1123345
Q ss_pred HHHHHhhcCCCCCCC-------hhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHHHHhC--------
Q 012897 146 TWTLSNFCRGKPQPP-------FDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAG-------- 208 (454)
Q Consensus 146 ~~~L~~l~~~~~~~~-------~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------- 208 (454)
+.+++.+..-..... ......++..|..++-++ ..+++..++.+++++.+.+..+...+.+..
T Consensus 288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 288 LQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCc
Confidence 566666655432111 122356777788777666 456788888899999888776666665531
Q ss_pred --cHHHHHHhcCC-CCCcchhhHHHHHhHhhccCccchhhhhcc-----------CCh--HHHHHhhcCCcchhHHHHHH
Q 012897 209 --VCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITY-----------GAL--PYLLGLLTHSHKKSIKKEAC 272 (454)
Q Consensus 209 --~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~l--~~L~~~L~~~~~~~v~~~a~ 272 (454)
++-.++.+... .....|.++++|+..+...+......++.. .+. ..++..+.+. ++---..++
T Consensus 368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l~s~-d~~~nwFt~ 446 (970)
T KOG0946|consen 368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGLSST-DSLDNWFTA 446 (970)
T ss_pred cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHHhhccc-hHHHHHHHH
Confidence 12223333333 456789999999988888776554433310 000 1122222222 322223334
Q ss_pred HHHHHHhcCCHHHHHHHHh--------CC---ChHHHHHHhhh---cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897 273 WTISNITAGNRDQIQAVID--------AG---LVGPLVNLLQN---AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 338 (454)
Q Consensus 273 ~~L~nl~~~~~~~~~~l~~--------~~---~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 338 (454)
-+|..+...+......+.. .. .+...+..+.. ..+..+..-+..|+.+..+++......+.+.+.+
T Consensus 447 v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~i 526 (970)
T KOG0946|consen 447 VILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVKDFLSESSII 526 (970)
T ss_pred HHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHHHccccHH
Confidence 4444444333333322221 01 11111222211 1233344456666777777665555555667888
Q ss_pred HHHhhccCC
Q 012897 339 KPLCDLFVC 347 (454)
Q Consensus 339 ~~L~~~l~~ 347 (454)
+.|...+-.
T Consensus 527 q~Ltt~l~~ 535 (970)
T KOG0946|consen 527 QYLTTQLMD 535 (970)
T ss_pred HHHHHHHhh
Confidence 888876654
No 66
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.94 E-value=3.3e-08 Score=90.00 Aligned_cols=227 Identities=14% Similarity=0.179 Sum_probs=159.2
Q ss_pred hHHHHHHhchh-hhhhHHHHHHHHHHhhcCCCCCCChhhhh-------chHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 126 LIPLLAQLNER-AKLSMLRNATWTLSNFCRGKPQPPFDQVR-------PALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 126 i~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
...++.++... .++++..+++..+..+....+........ .....+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55666777666 78899999999999999887644332221 24567777999999999999999999998776
Q ss_pred hHHHHHHHHhCcHHHHHHhcCC----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh------cCCcchhH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGH----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------THSHKKSI 267 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L------~~~~~~~v 267 (454)
+....... .+.++.++.++.+ ++..++..++.++.++.. .+..+..+++.++++.+..++ .+....++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 55434322 3556666666654 455677889999999996 455777888999999999999 44446788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897 268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346 (454)
Q Consensus 268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~ 346 (454)
+.+++.++..++. +++....+.+.++++.|+++++.. .++|.+-++.++.|++..........++..++++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999988875 477777888888999999999875 77899999999999999876657788888787777766654
Q ss_pred --CCCHHHHHH
Q 012897 347 --CPDPRIVTV 355 (454)
Q Consensus 347 --~~~~~v~~~ 355 (454)
.+|+++..-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 367776653
No 67
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4e-06 Score=72.58 Aligned_cols=358 Identities=14% Similarity=0.151 Sum_probs=236.7
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPP---IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
.+|..+|..++.-+++.+..++.+..... +..++..++++.++.++...+ .++...|...+..++. .+.....++
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaaleaiF 166 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALEAIF 166 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHHHhc
Confidence 46778899999999999999987753222 444568899999999999999 8999999999999998 777777777
Q ss_pred hCCChHHH--HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 80 DHGAVPIF--VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 80 ~~g~i~~L--~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
+......+ ..+-...+.-.|...+..+..+.+-++........+|.+..|..-+....|.-++..++.....|.....
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 76655443 2333345677788888889999888888888888899888888888556788889999999999987766
Q ss_pred CCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhcCCCCCcchhhHHH
Q 012897 158 QPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTND---KIQAVIEA--GVCPRLVELLGHPSPSVLIPALR 230 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~ 230 (454)
...+....+++..+.+++.-. +|--...++.....+.....- .-+...+. -.+...+.++...+++....|..
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD 326 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID 326 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence 667777788999998888643 443333344443333221100 00111111 12444555667788999999999
Q ss_pred HHhHhhccCccchhhhhccCC--h-HHHHHhhcCCcchhHHHHHHHHHHHHhc---CCHHH---------HHH-HHh---
Q 012897 231 TVGNIVTGDDFQTQCIITYGA--L-PYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQ---------IQA-VID--- 291 (454)
Q Consensus 231 ~L~~l~~~~~~~~~~~~~~~~--l-~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~~~~---------~~~-l~~--- 291 (454)
+++.+....+ ..+.+.+.|- . ..+....+.. ...-+..+..+|.+++. -.+++ ... +.+
T Consensus 327 alGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaa 404 (524)
T KOG4413|consen 327 ALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAA 404 (524)
T ss_pred HHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHh
Confidence 9999987443 5555555443 2 2334444433 33456677788888774 12221 111 111
Q ss_pred ----CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC---HHHHHHHHHHHHHHH
Q 012897 292 ----AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD---PRIVTVCLEGLENIL 364 (454)
Q Consensus 292 ----~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~---~~v~~~al~~L~~l~ 364 (454)
..-...+...++.+.++++..+..++..++.. +......+.+.++++.+.+.--..+ .+-+..++.++.+-+
T Consensus 405 qstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaeaf 483 (524)
T KOG4413|consen 405 QSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEAF 483 (524)
T ss_pred hccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHHH
Confidence 12344555566777899999999999999874 3444444555677776665443222 123444555555544
Q ss_pred H
Q 012897 365 K 365 (454)
Q Consensus 365 ~ 365 (454)
.
T Consensus 484 l 484 (524)
T KOG4413|consen 484 L 484 (524)
T ss_pred H
Confidence 3
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.91 E-value=2.1e-07 Score=86.75 Aligned_cols=337 Identities=13% Similarity=0.121 Sum_probs=215.4
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
++...+..|++.. |++|.+|+...+.++.--.. ..+.+...| ..|.+.|....+++.-..+.++..+.+... ++
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4556778899999 99999999888887751111 112233323 446666777788887777777766653221 11
Q ss_pred H-HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 118 D-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 118 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
. .--..++++.+.-+| .+.+..+..+....+..++...+...-. ..-.+.=-|+.+|.+.+.+++++|..+++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1 011246788899888 7788999999999999999887543221 112222346677888999999999999999875
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 196 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
.-..+ +++..|+.-|+..+-..|....-+++-.+..+. -..++|.|+.=..++ +..|+...+.++
T Consensus 760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 43322 455566666655555555444444554443322 124677777777788 888999999988
Q ss_pred HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH-HHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897 276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ-IKYLVREGCIKPLCDLFVCPDPRIVT 354 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~~l~~~~~~v~~ 354 (454)
+.+.....+.....+ .-+.|.|-+.+.+.|+.-|..|...+.+++.++..-. ...++ +++..|..-+-.+.|.++.
T Consensus 825 ~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllwpNIle~sPhvi~ 901 (975)
T COG5181 825 CFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhhhhccCCCcHHHH
Confidence 888763222222222 2467788888888999999999999999988652110 00111 1233333334457788888
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 355 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 355 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
....++..+...-.. .-.+.-+++-+=|++..|+++.-...+..+
T Consensus 902 ~~~Eg~e~~~~~lg~--------------------g~~m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 902 SFDEGMESFATVLGS--------------------GAMMKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHHHHHHhcc--------------------HHHHHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 777777766543211 112344566678888899888777666544
No 69
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=6.2e-08 Score=95.20 Aligned_cols=270 Identities=18% Similarity=0.228 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
.+-|+.|...-....+.++.++-+ +|.+++.|-++- =|..|+..|+....-.+-.......-|++|++++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 344555555555554444333322 555555554433 2667888888888877888888888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh--hhhhHHHHHHHHHHhhcCCCCCCChh-hhhc
Q 012897 90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER--AKLSMLRNATWTLSNFCRGKPQPPFD-QVRP 166 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~ 166 (454)
+|+++-.++|-..+.+.+.|..-++.++..++..++-..+++.+..+ -+++-+..++.+|..++.+.+..+.. ...+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 99999999999999999998877788888888888888888877442 24578899999999999886444333 3466
Q ss_pred hHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC----cc
Q 012897 167 ALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD----DF 241 (454)
Q Consensus 167 ~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~ 241 (454)
.+..++..+.++ .+-++..++-||+.+-.+.+...=.-.+.+..+.|+.+|.++-++||.+|+.+|+.+..+. ++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 778888888875 6888999999999998877655433455678999999999999999999999999998752 22
Q ss_pred chhhh------------hccCCh---HHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 242 QTQCI------------ITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 242 ~~~~~------------~~~~~l---~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
..... ++..+. -.++..++.. ++-+|.+.+-+|..+..+.........
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 22111 222222 2566677788 899999999999998876655544433
No 70
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.88 E-value=5.4e-08 Score=94.71 Aligned_cols=272 Identities=17% Similarity=0.169 Sum_probs=163.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh
Q 012897 86 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 165 (454)
Q Consensus 86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 165 (454)
.|++.+.+++.++|..|+.-|.+=.......-+.-.+...+..++++| .+.+.+|+..|..+++-|+.. .......
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsK---vke~~le 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSK---VKEDQLE 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhh---chHHHHH
Confidence 677778888899999888766543222111111112233577888888 888999999999999998843 2223334
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------CCCcchhhHHHHHhHhhccC
Q 012897 166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~ 239 (454)
..+..|..-+-++....+.-..-.|.....+-+..........+++.+...+.. +...++..++..++.+....
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 445555544434444443333223322222211122223333444444444432 33447888888887776543
Q ss_pred ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHH
Q 012897 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAI 317 (454)
Q Consensus 240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL 317 (454)
...... ++.+++..++.-+.+. ...+|+.|+.+|+.++.. +.+... +++..|.+-+... .+...+.-..+|
T Consensus 165 g~ll~~-fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 165 GTLLPN-FHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCL 237 (1233)
T ss_pred cccCcc-hHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHH
Confidence 322222 4557777888888888 889999999999999973 433332 3444555555443 344444555566
Q ss_pred HHhcCCCCHHHHHHHHHcCCcHHHhhcc---CCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 318 SNATSGGTHEQIKYLVREGCIKPLCDLF---VCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 318 ~~l~~~~~~~~~~~l~~~~~i~~L~~~l---~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
+.++.....+....+ ...++.+.++. +..+.++++.+++++..++..++.+
T Consensus 238 ~~i~r~ag~r~~~h~--~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSHL--DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHhcchhhccc--chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhh
Confidence 666654333322221 23577777777 7788899999999999999988764
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1e-07 Score=87.80 Aligned_cols=322 Identities=16% Similarity=0.096 Sum_probs=204.1
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897 36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
.-.+++++.+.++.+++ ..+|..|+..+.|++.. ...........+...+.++..+.+..++.. ...+-.+..+...
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcc
Confidence 44678999999999999 89999999999999972 222222223345666777776666666543 3333333221111
Q ss_pred hHH-HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 116 CRD-LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 116 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
-+. .+.-.+.++.+-..+ ...++..+...+.-|..|-..++..-..+...+++-|..+|.+++++++..+=.++.++-
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 111112234344444 455788888888877777665443444456788999999999999999876666665543
Q ss_pred c---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHH
Q 012897 195 D---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 271 (454)
Q Consensus 195 ~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a 271 (454)
. +++.. +-..+.++.++..+.++++.++..|+.-+..+..-.+... ...-.|++..+++++.+.+...++..+
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence 2 22211 1123577888889999999999999888887776544332 233457788888888777233455444
Q ss_pred HHHHHHHhc--CCHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC
Q 012897 272 CWTISNITA--GNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 348 (454)
Q Consensus 272 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~ 348 (454)
...-..+.. +++..... ++ ..+++.+...+.++..+.|..++.-+..+-...+.+... ........|..-++++
T Consensus 313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhcCc
Confidence 433222221 11211111 22 236777888888888899998888887776643322211 2345678888889999
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 012897 349 DPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 349 ~~~v~~~al~~L~~l~~~~~ 368 (454)
+.+|+..++..+.+++....
T Consensus 390 sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hhHHHHHHHHHHHHHhcCcc
Confidence 99999999999999987544
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1e-06 Score=83.68 Aligned_cols=275 Identities=15% Similarity=0.156 Sum_probs=189.0
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
++-+-++.+|++.. |-+|..|+.++..+...-|+..+ ..+|.|..-|.++++.++..|+.+++.|++.+|...-
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 34556778889988 99999999999999875555443 3589999999999999999999999999988876422
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHH--Hhcc
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALS--YLSD 195 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~a~~~L~--~l~~ 195 (454)
. .-|.+.+++..+.+.-+....+..++.|+-..| ..-..+++.+..++++.. ..+...++.++. +++.
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 2 356777888777788888888888888875532 233567888888888764 344555555543 2332
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 196 GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
..++... .+. -.++.|-.++.+.++.++.-++.+++.+....+...+ ..-..++.+|.+. ++.+|..|...+
T Consensus 289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccC-CchhHHHHHHHH
Confidence 2211111 111 2466777788899999999999999999976664443 2346789999999 999999999998
Q ss_pred HHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc
Q 012897 276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 345 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l 345 (454)
.-+.. .+++.. ++..|+..+... ....|...+.-+..+++..+...+.-|.+ ++..|+++.
T Consensus 361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa 422 (877)
T KOG1059|consen 361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA 422 (877)
T ss_pred HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence 87764 333433 344455555443 34667677776767766554443333322 344444443
No 73
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.4e-06 Score=81.93 Aligned_cols=341 Identities=18% Similarity=0.164 Sum_probs=219.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.+....+.+|.....++..+........... +.+.+.+++...+ ..-+..+.+.+..+..+ .....+.+.+
T Consensus 103 ~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~~~~~~~ 174 (569)
T KOG1242|consen 103 EELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIESLKEFG 174 (569)
T ss_pred HhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHhhhhhhh
Confidence 34556678888888888887765542333322 4667888888777 67788888888888863 3445566678
Q ss_pred ChHHHHHhhCCCCHHH-HHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 83 AVPIFVKLLASPSDDV-REQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v-~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
++..+.....+..... |+.++.+....+.. .+.....+.. .++.++... .+....++..+..+...+...-+
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~--- 248 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMRCLS--- 248 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHHhcC---
Confidence 8999999888754333 33333333322211 1111111111 244444444 45677888888888777765431
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
......++|.++.-+.........+++..++.++...+.+.. ..-..++|.+...|.+..+++|.++..+|..++..-+
T Consensus 249 ~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 249 AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 222344566665555555778888999999999888776655 4555899999999999999999999999999886332
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-C--CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-G--NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 317 (454)
. .. + ..+++.|++.+.++ ...+. .+...|+.-.. . .+... .-++|.|.+-+...+..+++.++.++
T Consensus 328 N-~d--I-~~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 328 N-PD--I-QKIIPTLLDALADP-SCYTP-ECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred c-HH--H-HHHHHHHHHHhcCc-ccchH-HHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhhhhHHHHH
Confidence 1 11 1 14678888888877 43222 22222221111 0 11100 12456666666667888999999999
Q ss_pred HHhcCCC-CHH-HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897 318 SNATSGG-THE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 318 ~~l~~~~-~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~ 371 (454)
.|++.-- ++. ..+++-+ +++.|-..+.+..|++|..+..+|..+.+......
T Consensus 397 dNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 9998854 232 2333333 67778788888899999999999988888655543
No 74
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.8e-06 Score=79.11 Aligned_cols=344 Identities=15% Similarity=0.103 Sum_probs=223.1
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
++..+..-+..+. +.+|.....+|..+......... ..+.+.+.+++......-+..+.+.++.+..+.. ...
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 4667777778888 88988888888777652211111 1346777788887778888888888888876543 234
Q ss_pred HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
+.+.+.+..+-..+.+..+..-++.+..+....+..-..........++|.++..+.+..+.++..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 44556677777777433333333334444444443333333444556777777778788899999888887766544332
Q ss_pred HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 200 KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 200 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
..- + .+++.++.-+....+.....++..++.++...+.... ..-..++|.+.+.|.+. .+++|+.+..++.+++
T Consensus 250 ~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 250 YAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFG 323 (569)
T ss_pred chh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 211 1 2344444444444788889999999999987775554 33448999999999999 9999999999999998
Q ss_pred c--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHH
Q 012897 280 A--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355 (454)
Q Consensus 280 ~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 355 (454)
. .+++ + ..++|.|++.+.++...+. .+...|+.-.... ++..... .++.|..-+...+..+...
T Consensus 324 svidN~d-I-----~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~ 391 (569)
T KOG1242|consen 324 SVIDNPD-I-----QKIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRK 391 (569)
T ss_pred HhhccHH-H-----HHHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhh
Confidence 7 3444 2 2367888888887653443 2333333221111 1111111 3666667777788888899
Q ss_pred HHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 356 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
+...+.|+.+.-+..+ ....|... .++.+........|+++.-+.+.+..+..
T Consensus 392 t~~IidNm~~LveDp~-------~lapfl~~-----Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPK-------DLAPFLPS-----LLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHHHHHHHHHhhcCHH-------HHhhhHHH-----HhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 9999999988764433 12223332 25677777777789999888888855554
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=5.4e-08 Score=89.10 Aligned_cols=307 Identities=13% Similarity=0.096 Sum_probs=196.0
Q ss_pred HHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCC
Q 012897 100 EQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN 178 (454)
Q Consensus 100 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~ 178 (454)
.+++.+|..++++-...|.-+.+..+.+.|+++| +.++..+...+...++++.-.. +........+++..+++++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3445555666665556677777888899999999 5566556666677777776554 4444556688999999999999
Q ss_pred ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc---chhhhhccC----
Q 012897 179 DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCIITYG---- 250 (454)
Q Consensus 179 ~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~---- 250 (454)
|..++....|.+..+..+.+...+ .++..-++..++.+..++...++.+++.++.|+...+.. ....+++..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999999877654322 345557789999999999999999999999999874332 222222221
Q ss_pred ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhc-----------chhhHHHHHHHHH
Q 012897 251 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNA-----------EFDIKKEAAWAIS 318 (454)
Q Consensus 251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~v~~~a~~aL~ 318 (454)
..+.+++.+... +|-.-...++.|.+++..+......+. +..++..+.+.+... ...+-..-.....
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 446677777777 666666778888888875444333333 234455454444321 1111111222222
Q ss_pred HhcCCCCHHHHHHHHHcCCc--HHHhhcc---CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccH
Q 012897 319 NATSGGTHEQIKYLVREGCI--KPLCDLF---VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL 393 (454)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~i--~~L~~~l---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 393 (454)
++....+. ... +.. +.+-.+= ..++.+.-.+..|.+.++....+..+... ..-+.+..+.+.|.-
T Consensus 645 ~l~e~~d~-f~r-----~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr----atveR~~iL~~~G~~ 714 (743)
T COG5369 645 NLSENSDK-FKR-----LVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR----ATVERIQILCANGIR 714 (743)
T ss_pred cccccccc-ccc-----ceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch----hhHHHHHHHHHccHH
Confidence 33221111 000 111 2221111 12344566677777777654333222110 222467889999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 394 EKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 394 ~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
+-++.+++++++.|++++..+++.+
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 76
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.3e-07 Score=86.67 Aligned_cols=286 Identities=16% Similarity=0.226 Sum_probs=192.6
Q ss_pred HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897 32 IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 111 (454)
Q Consensus 32 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 111 (454)
+.-+.+..+.+.|+++|..++ ..+.--+...++|.....+..+..+++.|++..+++++.+.+..+|....|++.++..
T Consensus 424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 344556778899999999988 7888888889999888788889999999999999999999999999999999999985
Q ss_pred CChh-hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC--CChhh------hhchHHHHHHhhcCCChhH
Q 012897 112 DSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PPFDQ------VRPALPALAQLVHSNDEEV 182 (454)
Q Consensus 112 ~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~------~~~~l~~l~~ll~~~~~~v 182 (454)
++.+ .+-..+..-++..++.+. .+++-.++.+++.+|.|++.+... ..... ..-+...++..++..+|-.
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~ 581 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME 581 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence 5443 344566667789999998 788889999999999999875421 11111 1336677888888888888
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhc----CC-------CCCcchhhHHHHHhHhhccCccchhhhhccC
Q 012897 183 LTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELL----GH-------PSPSVLIPALRTVGNIVTGDDFQTQCIITYG 250 (454)
Q Consensus 183 ~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll----~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 250 (454)
....+..|.+++..++.....+.+. +.+..+...| .. ....+...-.....++....+...+...-..
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p 661 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP 661 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence 8888999999887666554544443 3333333333 11 1122333334444444443332222221111
Q ss_pred ChHHHHHhhcCCcchhHHHHHHHHHHHHhc---C------CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 251 ALPYLLGLLTHSHKKSIKKEACWTISNITA---G------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
-.... +-=....+.+.-.+..|.+.|+.- + ..+.++.+.+.|+-+.+......+++.||+.+-.+|.++
T Consensus 662 ~~D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred Ccccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11100 000111144566677788777653 1 124555666777777777777777889999999999887
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=8.5e-07 Score=81.95 Aligned_cols=345 Identities=12% Similarity=0.084 Sum_probs=212.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH-HHHh
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-VVID 80 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~ 80 (454)
+.++++.|..+|..|+..+-+++...+.+.. ..-..+...+.++..+++ ..++.. ++.+-.+..+-.-.+. .+-=
T Consensus 90 ~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 90 LNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred HHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhccccccccCH
Confidence 4567888999999999999888766422222 222346777888888777 666543 3444333331111111 2222
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQ 158 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~ 158 (454)
.+++|.|-.-+...++..|...+.-|..+-. .|. .+.+. -...++.|.++| .+++.+++..+-.++.++...- ..
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666666666788888888777777632 222 22221 123567778888 7778888887777777766543 22
Q ss_pred CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc-chhhHHHH---HhH
Q 012897 159 PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS-VLIPALRT---VGN 234 (454)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-v~~~a~~~---L~~ 234 (454)
+........++.++.-+.++++.++..|+.-+..+..-.+.. -...-++++..++.++.+.++. ++..+... +..
T Consensus 243 P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 243 PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 222244677889999999999999999988887777655433 2234457888888888877663 44433322 222
Q ss_pred hhccCccchhhhhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897 235 IVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 313 (454)
Q Consensus 235 l~~~~~~~~~~~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 313 (454)
++. .+...+. ++. .++..+.+.+.+. ..+.|..+..-+..+-...+... ......+.+.|+.-+.+.+.+|...+
T Consensus 322 l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 322 LVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHHHHH
Confidence 222 1111111 332 4677888888888 88899888766666655444432 22246788999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897 314 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l 363 (454)
+..+.+++.......... ++..|.+++..+..-+...+--.+..+
T Consensus 398 L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 398 LSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 999999998654322211 344455555544333333333333333
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=3.5e-06 Score=80.96 Aligned_cols=318 Identities=18% Similarity=0.195 Sum_probs=196.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.|+++|+.+|-.|++.|..+--. ++..=++-.+-++..++. +.+|..|+.++-++-.-.++....+
T Consensus 115 k~L~DpN~LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL---- 181 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL---- 181 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH----
Confidence 356778888887777776554211 111112334456666777 8999999999999888777766644
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC--
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP-- 159 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~-- 159 (454)
++.+-.+|.+.++.+.-.|+.++-.+|-+.- .++ .+-...+.+++ .+-++--+...+..|..-++.. +.+
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~evCPerl----dLI-HknyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFEEVCPERL----DLI-HKNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHHHhchhHH----HHh-hHHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccc
Confidence 5667778888889998888888888874322 111 12245555555 3333333333444444334332 111
Q ss_pred -----------------------C---hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897 160 -----------------------P---FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213 (454)
Q Consensus 160 -----------------------~---~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 213 (454)
. ..-..-+++..-.+|.+.++.+..+++.+...++-.. ... .++..|
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaL 327 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKAL 327 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHH
Confidence 0 0111334555566788899999999999999988443 112 456677
Q ss_pred HHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897 214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDA 292 (454)
Q Consensus 214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 292 (454)
+.+|.+ +..++.-.+..+..++...+... .|.+-.++- +.....++..=..+|.+++.... + .
T Consensus 328 vrLLrs-~~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn--i-----~ 391 (968)
T KOG1060|consen 328 VRLLRS-NREVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESN--I-----S 391 (968)
T ss_pred HHHHhc-CCcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc--H-----H
Confidence 777754 45678888888888886544222 133333332 22133455556667777775321 1 1
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
.+++.+...+.+.+.++...+..+|+.++..... +...++.-|+.++++.+..|...++..|..++.....
T Consensus 392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 2455667777777767888888888888764321 2334677888888888888888888888888776554
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.77 E-value=3e-07 Score=83.05 Aligned_cols=273 Identities=17% Similarity=0.183 Sum_probs=181.8
Q ss_pred hHHHHhCCChHHHHHhhCCCCH--HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 75 TKVVIDHGAVPIFVKLLASPSD--DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 75 ~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
.+.+...|++..|+.++..++. .+|..|.+.|-.+.. .++++.+...| +..++.+.......+..+..+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3456667999999999999774 569999999998853 24677777776 666666665566788999999999999
Q ss_pred cCCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897 153 CRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 230 (454)
Q Consensus 153 ~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 230 (454)
..+.+.. ......+++..++-..+..+|.+..++..+|+|++-+ .......+++..+.+.|..+-.+.++-+|..||.
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 9987443 3345578888888888999999999999999998854 3445567888888899999888888889999999
Q ss_pred HHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhH
Q 012897 231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 310 (454)
Q Consensus 231 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 310 (454)
+.+.++...+ .-..+-+.|.+..+-.++.+. ++..-.. --...+.+. ....++.|+.++++...+.+
T Consensus 330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~-DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq 396 (832)
T KOG3678|consen 330 AVAVLATNKE-VEREVRKSGTLALVEPLVASL-DPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQ 396 (832)
T ss_pred HHhhhhhhhh-hhHHHhhccchhhhhhhhhcc-Ccchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhh
Confidence 9999987544 333455667666666666555 4421110 111111111 02245667777776555554
Q ss_pred HHHHHHHHHhcCCCCH-HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897 311 KEAAWAISNATSGGTH-EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 311 ~~a~~aL~~l~~~~~~-~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l 363 (454)
..++.-++-=+..... ...+.+.+-|.|..|-++.+++|.--...+-.+|.-+
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 4333333222111111 1223445568888888888876654334444444443
No 80
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.76 E-value=5.5e-07 Score=81.38 Aligned_cols=274 Identities=17% Similarity=0.159 Sum_probs=186.8
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 012897 32 IEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV 109 (454)
Q Consensus 32 ~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l 109 (454)
.+.+...|.+..|++++..++. ..++.+|.+.|-.+.. .++++.+...| ...++.+-+. ..++..+..+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3445567899999999999872 3469999999999885 67888888877 5555555543 5688999999999999
Q ss_pred hCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897 110 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDAC 187 (454)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~ 187 (454)
..++.+....+++.|++..++--. ...++.+.+.+..+|.|++.+. .....+.....-.-|+.+-.+.|+-++.+||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999988889999999999888777 5567999999999999998875 2222333344555666666677888999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhH
Q 012897 188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 267 (454)
Q Consensus 188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v 267 (454)
.+.+.++.+.. .-..+.++|.+..+-.++..-++.- +++......+ --....+..|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhh
Confidence 99999987654 3344556666665555555444321 1111110110 11124577899999877 5555
Q ss_pred HHHHHHHHHHHhc-CCHHH-HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 268 KKEACWTISNITA-GNRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 268 ~~~a~~~L~nl~~-~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+..+++-++.=+. .+... .+.+.+-|.|..|.++..+.+.-....|..+|.-+-.
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 5555544443322 12222 2234467889999999988776666666666665543
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.75 E-value=4.6e-06 Score=76.82 Aligned_cols=334 Identities=16% Similarity=0.070 Sum_probs=206.2
Q ss_pred HHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHH
Q 012897 65 TNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLR 143 (454)
Q Consensus 65 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~ 143 (454)
..+....+..+..+.-....+.+..++-+++.++|..+.+++..+..+.. .-..+...+.-..++.-+..+ .+..-+.
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 33333344444444333445555555555559999999999999987654 445556666555566666433 3556688
Q ss_pred HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCc
Q 012897 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPS 223 (454)
Q Consensus 144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 223 (454)
+|+..++.+..... .......+++..++.+..+.++..+..|+.+|+.++-.++ +.+...|++..+...+.++..+
T Consensus 87 QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 87 QALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHh
Confidence 99999998887642 2223457889999999999999999999999999998777 4477889999999999887666
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC------cch--hHHHHHHHHHHHHhcCCHHHHHHHHh-CCC
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS------HKK--SIKKEACWTISNITAGNRDQIQAVID-AGL 294 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~ 294 (454)
+....+.++-.+..... .++.+...--+..++.-+.+. .+. +.-..+..++..+...=+.......+ ...
T Consensus 163 ~~~~l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~ 241 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG 241 (371)
T ss_pred HHHHHHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH
Confidence 88888888888886443 444444333344444444222 122 23344455555554422221111111 247
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH------cCCc---HHHhhccCCCC---HHHHHHHHHHHHH
Q 012897 295 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR------EGCI---KPLCDLFVCPD---PRIVTVCLEGLEN 362 (454)
Q Consensus 295 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~i---~~L~~~l~~~~---~~v~~~al~~L~~ 362 (454)
+..|+..+..+++++|......+..+..-..+.....+.. .+-. ..+..-..... |.....-...+.+
T Consensus 242 lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~ 321 (371)
T PF14664_consen 242 LKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNH 321 (371)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHH
Confidence 8889999999999999999999999988654432211111 0111 00000000000 0000000011111
Q ss_pred HHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Q 012897 363 ILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWL 420 (454)
Q Consensus 363 l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~ 420 (454)
. ..-....|.+.|.++.|.++.... ++.+..+|.-++..++.
T Consensus 322 y----------------~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 322 Y----------------LALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred H----------------HHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 1 111345678899999999997666 89999999999887763
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4.4e-07 Score=89.43 Aligned_cols=228 Identities=16% Similarity=0.204 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC
Q 012897 13 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 92 (454)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 92 (454)
|+.|+..|..++.-. +..+..-..-|++|.++++|+++. .+++..-+.+..++..-++.+...+++.++-.++++.|.
T Consensus 487 RlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 566777777777665 667777788899999999999999 899999999999988878999999999999999999998
Q ss_pred C-C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh-hhhchH
Q 012897 93 S-P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD-QVRPAL 168 (454)
Q Consensus 93 ~-~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l 168 (454)
. + +++-|..++.+|+.++.+-+-.++...+.+.+...+..+..++.+-++..++-+|+.|-.+.+..+.. ...+..
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 6 3 36899999999999998877777888888888888888855456778889999999999887444443 446778
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcHH----HHHHhcCCCCCcchhhH
Q 012897 169 PALAQLVHSNDEEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVCP----RLVELLGHPSPSVLIPA 228 (454)
Q Consensus 169 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~i~----~L~~ll~~~~~~v~~~a 228 (454)
..|..+|.++-++||.+|+.+|+.+..+ .+++.... .+ +.+. .++.++++..+-++.+.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E-~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIE-DLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHH-HHHHhhHHHHHHHHhccchHHHHHH
Confidence 8999999999999999999999998765 23222211 11 2222 56667788888888888
Q ss_pred HHHHhHhhccCccch
Q 012897 229 LRTVGNIVTGDDFQT 243 (454)
Q Consensus 229 ~~~L~~l~~~~~~~~ 243 (454)
.-+++.++.+.....
T Consensus 724 ~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 724 VVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHHHhhHHHh
Confidence 888888887655443
No 83
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=8.7e-06 Score=78.38 Aligned_cols=355 Identities=14% Similarity=0.157 Sum_probs=179.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
...|.|.....+..|.+.|..++... .. ... .+|.+++...+.+ .+++...---|...+...++.. +.
T Consensus 41 ~~lLdSnkd~~KleAmKRIia~iA~G-~d-vS~-----~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--LL-- 108 (968)
T KOG1060|consen 41 KQLLDSNKDSLKLEAMKRIIALIAKG-KD-VSL-----LFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--LL-- 108 (968)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhcC-Cc-HHH-----HHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--ee--
Confidence 45677888888888888887776553 22 222 2555555555555 5555555545555554332221 11
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHH-----------------------------------hhCCChhhHHHHHhcCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGN-----------------------------------VAGDSPRCRDLVLSQGAL 126 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~-----------------------------------l~~~~~~~~~~~~~~~~i 126 (454)
-|..+-+-|.++|+.+|..|++++.. +-+-.++.+..+ +
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~ 182 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----E 182 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----H
Confidence 24444455555555555555555544 433333222221 1
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC---hHHHHH
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT---NDKIQA 203 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~ 203 (454)
..+-.+| .+.++-|.-.|+.+...+|-+ ......+-...+..+|.+-++.-+..++..|...+++. +.....
T Consensus 183 e~I~~LL-aD~splVvgsAv~AF~evCPe----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~ 257 (968)
T KOG1060|consen 183 EVIKKLL-ADRSPLVVGSAVMAFEEVCPE----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDS 257 (968)
T ss_pred HHHHHHh-cCCCCcchhHHHHHHHHhchh----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccc
Confidence 1111222 444444555555555544422 22233334444444444444444444444444433210 000000
Q ss_pred HH----------------------Hh---CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897 204 VI----------------------EA---GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258 (454)
Q Consensus 204 ~~----------------------~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 258 (454)
.. +. -+++..-.++.+.++.+..+++.+...++-.+. ...+++.|+.+
T Consensus 258 ~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrL 330 (968)
T KOG1060|consen 258 SLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRL 330 (968)
T ss_pred ccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHH
Confidence 00 00 012223334455566666777777766664321 11446677777
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897 259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREG 336 (454)
Q Consensus 259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (454)
|.+. ..+|...+..+..++...+... -|.+..+.- ++...++..=+..|.+++...+...
T Consensus 331 Lrs~--~~vqyvvL~nIa~~s~~~~~lF--------~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~-------- 392 (968)
T KOG1060|consen 331 LRSN--REVQYVVLQNIATISIKRPTLF--------EPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE-------- 392 (968)
T ss_pred HhcC--CcchhhhHHHHHHHHhcchhhh--------hhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH--------
Confidence 7544 3466666666666654433322 233333322 2234566666777888876443222
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (454)
.++-+..++++.+.++...++.+|+.+...-.... .-++.-|..++.+.++-|-..|...|.
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~------------------~tCL~gLv~Llsshde~Vv~eaV~vIk 454 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT------------------DTCLNGLVQLLSSHDELVVAEAVVVIK 454 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh------------------hHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 35667778888888888888888888865432211 223455666666667777777777777
Q ss_pred HhcCcC
Q 012897 417 TYWLEE 422 (454)
Q Consensus 417 ~~~~~~ 422 (454)
++++.+
T Consensus 455 ~Llq~~ 460 (968)
T KOG1060|consen 455 RLLQKD 460 (968)
T ss_pred HHHhhC
Confidence 766543
No 84
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.8e-06 Score=85.45 Aligned_cols=376 Identities=14% Similarity=0.118 Sum_probs=240.2
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
-+++++.++..++..+.++++...... ...++++.+.++..+.. ..+|..|...+.++........ -....+.
T Consensus 246 c~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~~ 318 (759)
T KOG0211|consen 246 CQDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSLT 318 (759)
T ss_pred ccccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhhh
Confidence 356678888888888888877664433 33557888888888888 6888888888777766211111 1223456
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhC--------------------CChhh--------------------HHHHHhcC
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAG--------------------DSPRC--------------------RDLVLSQG 124 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~--------------------~~~~~--------------------~~~~~~~~ 124 (454)
+.+++...+++..++.........++. +.... +..+....
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 777777777666666655544443331 10000 00111111
Q ss_pred ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 012897 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 204 (454)
Q Consensus 125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 204 (454)
.++.+-.+. .+.+..++...+..+..+.--.+ .........|.....+++.++.++.+..+.+..+-...+..-...
T Consensus 399 ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 399 ILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 122222222 33444555544444444332211 222335677888888999999999999887765543333222334
Q ss_pred HHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897 205 IEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284 (454)
Q Consensus 205 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~ 284 (454)
.....++.+..+-.+..+.++.+.++.+..++.... ..+++...-+.+...+.+. ...+|+.|+..+..++.....
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc
Confidence 445677778777777788999999999988886332 3455555666666777776 778999999999888863221
Q ss_pred HHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897 285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 285 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~ 364 (454)
.......++.++.+...++...|...+.++..++.....+. ..+.+++.+..+..++.+.|+..++..|..+.
T Consensus 552 ---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 552 ---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred ---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 22224467778887777778899999999887776544333 44568999999999999999999999999998
Q ss_pred HhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897 365 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILET 417 (454)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (454)
+.-... ..+....+.++.+-.+++.+++-+|......
T Consensus 625 ~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 625 KLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred hhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 764432 2233345667777778888887777665443
No 85
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.5e-06 Score=84.37 Aligned_cols=374 Identities=17% Similarity=0.128 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
.+.+..++..+........... ++....+..-++-++.. +.++..++.-+++++...+.... ..+.++.+..
T Consensus 212 ~~sr~sacglf~~~~~~~~~~~----vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~~---~s~v~~~~~~ 283 (759)
T KOG0211|consen 212 FQSRLSACGLFGKLYVSLPDDA----VKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEIV---KSEVLPTLIQ 283 (759)
T ss_pred hhcchhhhhhhHHhccCCChHH----HHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHHH---HhhccHHHhh
Confidence 3456778888888776663333 33334556666666767 99999999999999884444322 3467899999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhC--CCh-hhHHHHHhcCChHHHHHHhchhhhhhHHHH----------------------
Q 012897 90 LLASPSDDVREQAVWALGNVAG--DSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRN---------------------- 144 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~---------------------- 144 (454)
+..+....+|..|...+.++.. ..+ ..... ..+.+++.. .+.+..++..
T Consensus 284 L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~-----~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~ 357 (759)
T KOG0211|consen 284 LLRDDQDSVREAAVESLVSLLDLLDDDDDVVKS-----LTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLV 357 (759)
T ss_pred hhhcchhhHHHHHHHHHHHHHHhcCCchhhhhh-----hhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccch
Confidence 9999889999988888877763 222 11111 233444443 2222222222
Q ss_pred -----------------HHHHHHhhcCCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 012897 145 -----------------ATWTLSNFCRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 205 (454)
Q Consensus 145 -----------------a~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 205 (454)
+..-...++.... .........++|.+-.+..+.+..++.+.+..+..+....+. ...+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc
Confidence 2222222221110 011112234456666666777777777777666665433220 1111
Q ss_pred HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
....+.++..+++..+.++.+..+.+..+-..++...........++.+..+-... ...+|....+.+-.++....
T Consensus 436 -~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred -cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--
Confidence 14567777788888899999998887776655554444555667788888888777 88899998888888775322
Q ss_pred HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
..+.+...-+.+...+.+....++..|+..+..++..-..+. .....++.+..+..+++...|...+.++..+..
T Consensus 512 -~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w----~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEW----ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred -hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch----hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 233333344445555666678999999998888876433211 122357777777777778888888888887776
Q ss_pred hhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCC
Q 012897 366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDD 424 (454)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 424 (454)
..... +.....++.+..+..++.++|+-.+.+.+..+...-..
T Consensus 587 v~g~e----------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 587 VLGQE----------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred HhccH----------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 64432 22244468888999999999999999998887765443
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.65 E-value=6.2e-06 Score=76.91 Aligned_cols=210 Identities=18% Similarity=0.046 Sum_probs=111.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 120 (454)
+..|+..|.+.+ +.++..++.+|+.+-. .+..+.|+.+|++.++.++..++.++...-.
T Consensus 88 ~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGP-EGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------- 146 (410)
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------
Confidence 445555555555 5555555555554332 2334555555555555555555544444210
Q ss_pred HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 012897 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200 (454)
Q Consensus 121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 200 (454)
...+.+...+ ++.++.++..++.+|..+-.. ..++.|...+.+.++.|+..+++++..+.. +
T Consensus 147 ---~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~-- 208 (410)
T TIGR02270 147 ---DPGPALEAAL-THEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R-- 208 (410)
T ss_pred ---ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H--
Confidence 0133444444 455555666666655555432 334445555555566666666555544422 1
Q ss_pred HHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 201 IQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 201 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
.....+..+...........+..++... + ....++.|..+++++ .++..++++++.+..
T Consensus 209 -------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~---------~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 209 -------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--G---------GPDAQAWLRELLQAA---ATRREALRAVGLVGD 267 (410)
T ss_pred -------hHHHHHHHHHhccCccHHHHHHHHHHhC--C---------chhHHHHHHHHhcCh---hhHHHHHHHHHHcCC
Confidence 1112222222222222222222222222 0 114567778888766 389999999997743
Q ss_pred CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 281 GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 281 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
...++.|+..+... .++..|.+++..++-.
T Consensus 268 -----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 268 -----------VEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred -----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 24677788877643 4999999999999764
No 87
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.1e-06 Score=71.89 Aligned_cols=270 Identities=14% Similarity=0.179 Sum_probs=168.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+++++.+.+|.++..|...+..+.... ...-.-.+...++.+.+++.... + ...|+.++.|++. .+..++.+++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 467889999999999999998887651 11111123346788999998888 5 6789999999999 7888888887
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHH-hchhhh-hhHHHHHHHHHHhhc
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAQ-LNERAK-LSMLRNATWTLSNFC 153 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~-l~~~~~-~~~~~~a~~~L~~l~ 153 (454)
. ++..++..+.++...+....+..+.|++++........... .++..++.. ...+.+ ..-..+...++.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 7 88888888888877888888999999998776655443322 123333333 322222 133455666778887
Q ss_pred CCCCCCChhhhhchH--HHHHHhhcCCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH--------------
Q 012897 154 RGKPQPPFDQVRPAL--PALAQLVHSNDEEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRLV-------------- 214 (454)
Q Consensus 154 ~~~~~~~~~~~~~~l--~~l~~ll~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~-------------- 214 (454)
+....+........+ +.+..+-. .+..+| .-.+.+|.|+|...... ..+++. .+++.++
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 765433333332222 23333333 555554 44566788877654433 223321 2222222
Q ss_pred -------HhcC-----CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 215 -------ELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 215 -------~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+++. .+++.+|..-+.+|-.+|... ..++.+.+.|+.+.+-.+=+...+++++..+-.....+..
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 3331 245678999999999888743 3556666666666666665555466666655555555544
No 88
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=4.3e-06 Score=85.92 Aligned_cols=373 Identities=13% Similarity=0.113 Sum_probs=221.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDH 81 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~ 81 (454)
..+.|.+|..|..++.=|..+................+...+.++|.+.+ +-+|..|.+-++-+-. ++...++.
T Consensus 825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~---- 899 (1702)
T KOG0915|consen 825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS---- 899 (1702)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH----
Confidence 45678999999987766666655432222222223345688999999998 8889988888776655 33333333
Q ss_pred CChHHHHHhhCCC---------CHHHHH-------------HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhh
Q 012897 82 GAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKL 139 (454)
Q Consensus 82 g~i~~L~~lL~~~---------~~~v~~-------------~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 139 (454)
.+..|+.-|..+ +.++-+ ....=|++|+++-. +-+.+-.++++-+.+-.-
T Consensus 900 -LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 900 -LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW 971 (1702)
T ss_pred -HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence 345555544321 111111 11122333332110 001123334444222233
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897 140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 219 (454)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 219 (454)
.-+.-|+.-+..++..............+|.|...=-+++..|+.....+...+........+..+. ++++.|+.-+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence 3455566666666665433444455677888888777889999887777776677665555555554 788889999999
Q ss_pred CCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHH---HHHHHHHhcC-----CHHHHHHH
Q 012897 220 PSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEA---CWTISNITAG-----NRDQIQAV 289 (454)
Q Consensus 220 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a---~~~L~nl~~~-----~~~~~~~l 289 (454)
..+.+|+++|.+|..+..+.+... +.+ ..++..+...+++- ...||+.| +.+|+.++.. ++..-+..
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 999999999999999998865321 111 14555666666666 66777765 4555555531 11112222
Q ss_pred HhCCChHHHHHH-hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHH-HHHHHHHHHHhh
Q 012897 290 IDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV-CLEGLENILKVG 367 (454)
Q Consensus 290 ~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~-al~~L~~l~~~~ 367 (454)
+ ..++|.|+.- +.+.-+++|..++.++..++........+.+. .+++.|++.++.-++.+... ++++ .++-...
T Consensus 1128 l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ea 1203 (1702)
T KOG0915|consen 1128 L-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INIETEA 1203 (1702)
T ss_pred H-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhhHHHH
Confidence 2 2355555541 12567899999999999999876654444433 37888888888777766554 3333 3332211
Q ss_pred hhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHH
Q 012897 368 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI 407 (454)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v 407 (454)
..+...+..+.+-.++.++.+.++-+..+
T Consensus 1204 -----------lDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1204 -----------LDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred -----------HHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence 11113445555666777777766665444
No 89
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=9.7e-06 Score=77.65 Aligned_cols=358 Identities=15% Similarity=0.110 Sum_probs=185.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcH--HHHHH------cCCHHHH----------------------------HH
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPI--EEVIQ------SGVVPRF----------------------------VE 46 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~--~~~~~------~~~l~~L----------------------------~~ 46 (454)
+.|.+++.+.+..|.+.+..++.+...-+. -.+++ ..-++.| -+
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~Rk 106 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRK 106 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhh
Confidence 457788889999999888877655422211 11111 1111111 12
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897 47 FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126 (454)
Q Consensus 47 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 126 (454)
=|++++ +-+|-.+++.|+.+=. ++.. ...+|.+..+|.+...-+|++|+.++..+-.... ..+ -++-
T Consensus 107 DLQHPN-EyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap 173 (948)
T KOG1058|consen 107 DLQHPN-EYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP 173 (948)
T ss_pred hccCch-HhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence 245555 5666666666665543 3322 2467888889999999999999998888854311 111 1223
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh---cCCChhHHHHHHHHHHHhccCChHHHHH
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDKIQA 203 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 203 (454)
+.+-..|..+.|+..+++|...|...-.. ..+..+...+ .+-++.++......+...+...+....
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~- 242 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA- 242 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-
Confidence 33444555666777777776655443211 2222222222 223455555555555555544433322
Q ss_pred HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc------------------cchhhhh--------------ccCC
Q 012897 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD------------------FQTQCII--------------TYGA 251 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------------------~~~~~~~--------------~~~~ 251 (454)
..+..+..+|.+.++.++..|..+|.+++.... ...+.+. =.+.
T Consensus 243 ----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l 318 (948)
T KOG1058|consen 243 ----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL 318 (948)
T ss_pred ----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence 334455556655555555544444444442211 0111000 0022
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-----------cchhhHHHHHHHHHHh
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-----------AEFDIKKEAAWAISNA 320 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-----------~~~~v~~~a~~aL~~l 320 (454)
+--++..|.++ +-++|+.+......++.. .-+..++.+++. ++..-|+.-..++..+
T Consensus 319 ~mDvLrvLss~-dldvr~Ktldi~ldLvss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHcCcc-cccHHHHHHHHHHhhhhh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 23334444455 555665555555444432 112222222211 1223455666666666
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 400 (454)
+..-+ +. ...+++.|++.+.+.++.....++..+...+...++.+ ...+. ..++.+-
T Consensus 387 av~Fp-~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~ 443 (948)
T KOG1058|consen 387 AVKFP-EV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFP 443 (948)
T ss_pred hhcCh-HH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhh
Confidence 55422 22 12367888888888888877777777777776654422 11111 2223333
Q ss_pred cCCCHHHHHHHHHHHHHhcCcCC
Q 012897 401 SHDNNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 401 ~~~~~~v~~~a~~~l~~~~~~~~ 423 (454)
.-...+++.-|.|++..|...+.
T Consensus 444 ~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 444 QIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhcccccchhHHHHHHHHHhhhH
Confidence 44556778888888888887655
No 90
>PF05536 Neurochondrin: Neurochondrin
Probab=98.57 E-value=0.00011 Score=71.71 Aligned_cols=375 Identities=16% Similarity=0.134 Sum_probs=227.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHhcCCCch
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIASGTSE 73 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~~l~~~~~~ 73 (454)
++.|++.+.+-+..++..+++++...+... .+.+.+.=+.+.+-++|.++. ....+.-|+.+|..+|. .++
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~ 89 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPE 89 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-Chh
Confidence 356788888899999999999998753222 334667766788888888732 15678888999999998 555
Q ss_pred hhHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 74 NTKVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 74 ~~~~~~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
....---.+-||.|+..+.+.+. .+...++.+|..++ ..+..+..+.+.|.++.|.+.+.+ .+...+.++.++.++
T Consensus 90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNL 166 (543)
T ss_pred hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 54222223569999999988666 99999999999999 556678889999999999999844 556678888888888
Q ss_pred cCCCCCC----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-HHH----HHHhCcHHHHHHhcCC-CCC
Q 012897 153 CRGKPQP----PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-IQA----VIEAGVCPRLVELLGH-PSP 222 (454)
Q Consensus 153 ~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~----~~~~~~i~~L~~ll~~-~~~ 222 (454)
+...... .......+++.+...+.......+...+..|..+-...+.. ... -.-..+..-+..++++ ..+
T Consensus 167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~ 246 (543)
T PF05536_consen 167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP 246 (543)
T ss_pred HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence 7664321 12223456667777777777777888888888887655311 011 1112344445555554 345
Q ss_pred cchhhHHHHHhHhhccCccchhhhh-cc-----CChHHHHHhh---------------cCCcchhHHH--HHHH-H----
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCII-TY-----GALPYLLGLL---------------THSHKKSIKK--EACW-T---- 274 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~l~~L~~~L---------------~~~~~~~v~~--~a~~-~---- 274 (454)
.-|..++...+.+..... .+.++ +. .+.-.++++. ..+....... .+|+ +
T Consensus 247 ~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~ 324 (543)
T PF05536_consen 247 SQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHF 324 (543)
T ss_pred HHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 667777777666664311 11111 11 1222222221 1111111111 1111 1
Q ss_pred HHHHhc--------CCHHHHHHHHh--CCChHHHHHHhhhc------chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897 275 ISNITA--------GNRDQIQAVID--AGLVGPLVNLLQNA------EFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 338 (454)
Q Consensus 275 L~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 338 (454)
+..++. -.++....+.. .+.+...+++++.- ++.....+.++|+....-.+...++.+ .+++
T Consensus 325 I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll 402 (543)
T PF05536_consen 325 IGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--YGLL 402 (543)
T ss_pred HHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--HHHH
Confidence 112222 12333333331 34455555666542 333667788888888775554444443 3688
Q ss_pred HHHhhccCCCCH----------HHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897 339 KPLCDLFVCPDP----------RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 398 (454)
Q Consensus 339 ~~L~~~l~~~~~----------~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 398 (454)
+.++++.+.... +.+...+=+|..+... ...++.+...|+.+.+-+
T Consensus 403 ~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e--------------~~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 403 PFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE--------------EEGRKILLSNGGWKLLCD 458 (543)
T ss_pred HHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc--------------HHHHHHHHhCCcHHHHHH
Confidence 888888875332 3555666667776632 224677777888776654
No 91
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.8e-05 Score=76.39 Aligned_cols=290 Identities=15% Similarity=0.198 Sum_probs=193.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHH
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 86 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 86 (454)
..++.++.-|+..+..+.++ .+....+...+.+..|+.+|.+. |..|..++.+|..+++ +++......+.|++..
T Consensus 1783 ~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~y 1857 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMY 1857 (2235)
T ss_pred cCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhh
Confidence 45788999999998877766 68889999999999999998775 4789999999999999 8888888889999999
Q ss_pred HHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhhHHH-----------HHhcCChHHHHHHhchh-hh------hhHHHH
Q 012897 87 FVKLLAS-PSDDVREQAVWALGNVAGDS---PRCRDL-----------VLSQGALIPLLAQLNER-AK------LSMLRN 144 (454)
Q Consensus 87 L~~lL~~-~~~~v~~~a~~~L~~l~~~~---~~~~~~-----------~~~~~~i~~l~~~l~~~-~~------~~~~~~ 144 (454)
+..++.. .++..|.+++..++.+..+. |..+.. .++. .-+..+..+... ++ +..+..
T Consensus 1858 il~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD-~PEAaVH~fE~T~EnPELiWn~~~r~k 1936 (2235)
T KOG1789|consen 1858 ILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD-SPEAAVHMFESTSENPELIWNEVTRQK 1936 (2235)
T ss_pred hhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc-CHHHHHHHHhccCCCcccccCHhHHHH
Confidence 9988765 66999999999999987542 221111 1111 123333333211 11 122222
Q ss_pred HHHHHHhhcCC----C---CC--------------------------------------CChhhhhchHHHHHHhhcCCC
Q 012897 145 ATWTLSNFCRG----K---PQ--------------------------------------PPFDQVRPALPALAQLVHSND 179 (454)
Q Consensus 145 a~~~L~~l~~~----~---~~--------------------------------------~~~~~~~~~l~~l~~ll~~~~ 179 (454)
....+..+... . +. .......+.+..+..++..++
T Consensus 1937 vS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~ 2016 (2235)
T KOG1789|consen 1937 VSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPT 2016 (2235)
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCC
Confidence 22233222211 0 00 011223445555566665443
Q ss_pred hh--HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHH
Q 012897 180 EE--VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG 257 (454)
Q Consensus 180 ~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 257 (454)
++ .......++..+.+..+...+.+-.-|.+|.++..+...+..+-..|+++|..++.+ ..+.+.+.....+..+++
T Consensus 2017 peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~ 2095 (2235)
T KOG1789|consen 2017 PEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMK 2095 (2235)
T ss_pred cccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHH
Confidence 32 222222334444455565556666679999999999888888889999999999974 446666777777777888
Q ss_pred hhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhc
Q 012897 258 LLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNA 305 (454)
Q Consensus 258 ~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~ 305 (454)
.|+.. - ...--|+.+|..+.. ...+.+...++.|.+|.|+.+++..
T Consensus 2096 ~mkK~-~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2096 SMKKQ-P-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHhc-c-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 88655 2 344478888888876 3445555667899999999999764
No 92
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=4.7e-05 Score=65.62 Aligned_cols=271 Identities=14% Similarity=0.133 Sum_probs=174.9
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 206 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 206 (454)
..++.++ .+.++.++..|...+..++......-.......++.+.+++...++ ...|..++.|++.... ....++.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence 4567777 7788999999999888888762111222235577888899887776 7788899999987643 3344555
Q ss_pred hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh------ccCChHHHHHhhcCCcchhH-HHHHHHHHHHHh
Q 012897 207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII------TYGALPYLLGLLTHSHKKSI-KKEACWTISNIT 279 (454)
Q Consensus 207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~L~~~L~~~~~~~v-~~~a~~~L~nl~ 279 (454)
. ++..++..+.++...+...+|..++|+++........+. +.+.+........++.+... -...+.+++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 4 888888888888889999999999999986553322221 24555555566655433212 234566777887
Q ss_pred cCCHHHHHHHHhCCC--hHHHHHHhhhcchhhH-HHHHHHHHHhcCCCCHHHHHHHHH--cCCcHHH-------------
Q 012897 280 AGNRDQIQAVIDAGL--VGPLVNLLQNAEFDIK-KEAAWAISNATSGGTHEQIKYLVR--EGCIKPL------------- 341 (454)
Q Consensus 280 ~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~--~~~i~~L------------- 341 (454)
.. +..+..+.+... ...+..+-. .+..+| ...+.+|.|++.... .+ ..+.. ..+++.|
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h-~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LH-EVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hH-HHHhcchHHHHHHHHhhcCCccccCHH
Confidence 54 444555554332 333444333 444554 456777788665321 11 11111 1112221
Q ss_pred --------hhccC-----CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH-hcCCCHHH
Q 012897 342 --------CDLFV-----CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL-QSHDNNEI 407 (454)
Q Consensus 342 --------~~~l~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v 407 (454)
.+++. .+++.+++..+.+|..++.- ..-++.++.-|+.+.++.+ ...+++++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCcHHH
Confidence 13343 35688999999999998743 2248889999999999988 46688999
Q ss_pred HHHHHHHHHHhcC
Q 012897 408 YEKAVKILETYWL 420 (454)
Q Consensus 408 ~~~a~~~l~~~~~ 420 (454)
...+.++.+-+..
T Consensus 303 ~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 303 REACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888776655
No 93
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.48 E-value=1.1e-05 Score=81.14 Aligned_cols=296 Identities=15% Similarity=0.094 Sum_probs=189.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC----C
Q 012897 83 AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----P 157 (454)
Q Consensus 83 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~ 157 (454)
+++.+...+++ .....+..|+..|..++..... ...-..+++.++.++ .++...|+..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 45666666666 5677888899998888754321 222234688888888 7888999999999998887553 3
Q ss_pred CCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897 158 QPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 236 (454)
........-++|.|..++.+ ....++..-+.+|..++.... .+.+..--.....++.+++.+. ....
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset-------~~~~- 566 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET-------APEQ- 566 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc-------cccc-
Confidence 33344556788999999887 556677777778888775322 2222211122222344444330 0000
Q ss_pred ccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897 237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316 (454)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 316 (454)
........+. ..+-.....++.++ .+.||...+..|.-||..... .--+.-+++.|+..|++.|+.+|..-...
T Consensus 567 -~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 567 -NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred -ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 0111222222 24445666777777 788999888888888751110 00123468999999999999999877777
Q ss_pred HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHH
Q 012897 317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI 396 (454)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 396 (454)
|.-++..-.... .++..++.|.+-+.++++-|...|+++|..+++.+--.+.. +. ..++..
T Consensus 641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~---------v~------~i~~~v 701 (1431)
T KOG1240|consen 641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA---------VK------DILQDV 701 (1431)
T ss_pred ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH---------HH------HHHHhh
Confidence 766554322221 23457899999999999999999999999999865432210 11 223344
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc
Q 012897 397 ENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 397 ~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
--++-|+|.=|+..+..+|....
T Consensus 702 ~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 702 LPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred hhheeCchHHHHHHHHHHHHHHH
Confidence 45688999999999988766543
No 94
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00019 Score=62.44 Aligned_cols=328 Identities=13% Similarity=0.106 Sum_probs=199.4
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSP--RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
+..+.|-.-|..++..++..++..++.+..+++ ..... +.+.++++.++..+ -..+.++...|...+..++..+.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI-ggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI-GGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcHH
Confidence 455666666777889999999999988886655 23333 44778888888888 67788999999999999987753
Q ss_pred CCChhhhhchHH--HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhH
Q 012897 158 QPPFDQVRPALP--ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGN 234 (454)
Q Consensus 158 ~~~~~~~~~~l~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~ 234 (454)
.....+.+..+. .+.++-...+.-++...+..+..+..-++......-++|++..|..-++- .+.-++..++.....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 222222222222 22233334456677778888888888778777777888999998888876 566678888888888
Q ss_pred hhccCccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhc------CCHHHHHHHHhCCChHHHHHHhhhcch
Q 012897 235 IVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITA------GNRDQIQAVIDAGLVGPLVNLLQNAEF 307 (454)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~~~i~~L~~ll~~~~~ 307 (454)
++. ....++.+-+.|++..+..++.... +|.-+-.++...+.+.. -+++....-. .-+++...+++...|+
T Consensus 241 Lae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceal-iiaidgsfEmiEmnDp 318 (524)
T KOG4413|consen 241 LAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEAL-IIAIDGSFEMIEMNDP 318 (524)
T ss_pred HHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHH-HHHHHhhHHhhhcCCc
Confidence 876 3445667778899999999886431 34344445544444432 1333222111 1246667788888999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHcCC--cHH-HhhccCCCCHHHHHHHHHHHHHH---HHhhhhhhhccCCccccc
Q 012897 308 DIKKEAAWAISNATSGGTHEQIKYLVREGC--IKP-LCDLFVCPDPRIVTVCLEGLENI---LKVGEAEKNMGTATADVN 381 (454)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--i~~-L~~~l~~~~~~v~~~al~~L~~l---~~~~~~~~~~~~~~~~~~ 381 (454)
+....|..+++.+-++- +....+.+.|- .+. +....+.....-+..++.+|.++ ++..++....+. ...
T Consensus 319 daieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgk---aee 393 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGK---AEE 393 (524)
T ss_pred hHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccH---HHH
Confidence 99999999999997743 33344444432 222 33333322222233445555554 333333221110 011
Q ss_pred HHHHHH----HHh---ccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 012897 382 QYAQLV----EEA---EGLEKIENLQSHDNNEIYEKAVKILET 417 (454)
Q Consensus 382 ~~~~~l----~~~---g~~~~l~~l~~~~~~~v~~~a~~~l~~ 417 (454)
..+..+ .++ .-++....+...+.+++.-.+.+.+..
T Consensus 394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA 436 (524)
T KOG4413|consen 394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA 436 (524)
T ss_pred HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 111111 111 112334455677888988877766543
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3.6e-05 Score=72.90 Aligned_cols=220 Identities=14% Similarity=0.137 Sum_probs=145.8
Q ss_pred HHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC-----hHHHHH
Q 012897 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT-----NDKIQA 203 (454)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~ 203 (454)
+..+. .+.+..|+..|+.+|..|.... .....+....++++.+++..|+..|+..+.-..... .+..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 6778889999999988887642 222345677889999999999999977665544322 111122
Q ss_pred HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH--hcC
Q 012897 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI--TAG 281 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl--~~~ 281 (454)
-....++..+...+.+.+..+|..|.+.|+.+-.-+++.....++..++..+-..=..+ +......++- +++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG 350 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG 350 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence 22236788889999999999999999999998776555444444433333211111000 0111111111 110
Q ss_pred -----------CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897 282 -----------NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 350 (454)
Q Consensus 282 -----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~ 350 (454)
..+.-..++..|.-..++.-++++-.+||.+|...++.++...+ .+... .+..|++++++...
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP-~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP-GFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC-CcHHH-----HHHHHHHHhccHHH
Confidence 01112235567777888888888889999999999999988643 22222 58899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012897 351 RIVTVCLEGLENILKV 366 (454)
Q Consensus 351 ~v~~~al~~L~~l~~~ 366 (454)
.|+..++.+|..|...
T Consensus 425 ~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998765
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.45 E-value=0.00013 Score=68.30 Aligned_cols=211 Identities=18% Similarity=0.075 Sum_probs=139.8
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 82 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 82 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.+++.++..|. .++.+++..++.++... +.+. .+..++..+ .+.++.++..+..+|..+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCc------
Confidence 35778888884 56677777666555432 2221 267788888 66778899999998886543
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
....+.|..++.+.++.++..++.++.... ....+.+..+|+++++.++..|+.+|+.+...
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 366788999999999999988887776521 12345788888899999999999999887642
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
..++.|...+.+. ++.||..|++++..+.. +.. +..+..+...........+..++...
T Consensus 178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A---------~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLA---------WGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhH---------HHHHHHHHhccCccHHHHHHHHHHhC
Confidence 3345577778888 99999999999977632 322 23344434443444443333333333
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHH
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l 363 (454)
+.+ ..++.|..+++++. ++..++.++..+
T Consensus 237 ---~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~l 265 (410)
T TIGR02270 237 ---GGP---------DAQAWLRELLQAAA--TRREALRAVGLV 265 (410)
T ss_pred ---Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHc
Confidence 122 24556666666543 666777666655
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.42 E-value=4.6e-05 Score=70.30 Aligned_cols=340 Identities=14% Similarity=0.090 Sum_probs=208.4
Q ss_pred HHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--C
Q 012897 17 TTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--P 94 (454)
Q Consensus 17 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~ 94 (454)
+..|.++.... +.....+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|.. .
T Consensus 4 ~N~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 4 ANDLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCC
Confidence 34555666554 322333444445666666666667 8999999999999998 77788888888877777777765 4
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHh
Q 012897 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 174 (454)
Q Consensus 95 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l 174 (454)
+..=|++|+..+..+....... ..+..+++..++.+. .+.++..+..++.+|..++-. ++......|++..+...
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~--~~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGP--KEIPRGVVRALVAIA-EHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRA 155 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCc--ccCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHH
Confidence 4667889999998887442211 112345677888888 667788999999999999876 44556668899999988
Q ss_pred hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-------CC--cchhhHHHHHhHhhccCccchhh
Q 012897 175 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SP--SVLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 175 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
+-++..++....+.++..+......+ +.+...--++.++.-+.+. +. +....+..++..+.+.-+.....
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l 234 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL 234 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence 87776668888999999988765433 2222212244444444332 12 23445666666666544433222
Q ss_pred hhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHH------HHHHhCCChHHHHHHh---hhcchhhHHHHH
Q 012897 246 IITY-GALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQI------QAVIDAGLVGPLVNLL---QNAEFDIKKEAA 314 (454)
Q Consensus 246 ~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~------~~l~~~~~i~~L~~ll---~~~~~~v~~~a~ 314 (454)
..+. ..++.|+..|..+ .+.+|....-.+..+.. ..+.-. ......+-...--++- ............
T Consensus 235 ~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~ 313 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSS 313 (371)
T ss_pred ecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccc
Confidence 2222 6889999999999 88899999999888876 222110 0111111110000000 000000000000
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhh
Q 012897 315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 315 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~ 367 (454)
-=.++..+--.-....+.+.|+++.|+++..+. ++.+..+|.-.|..+++..
T Consensus 314 -~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 314 -KRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred -ccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 000111100111234457889999999999987 7888888888888887653
No 98
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.41 E-value=6.4e-06 Score=61.68 Aligned_cols=154 Identities=8% Similarity=0.023 Sum_probs=124.3
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 329 (454)
+.+..|+.-+....+.+.++....-|.|++-+ |.+...+.+.++++.++..+...+..++..++..|+|++. ++...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence 44566776666665888899988889998865 6677788889999999999999999999999999999998 66778
Q ss_pred HHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHH
Q 012897 330 KYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYE 409 (454)
Q Consensus 330 ~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~ 409 (454)
+.+.+.+.++.++..++++...+...++..+..+...+.. ++..+-...+++.+++...+.+.+.+.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rn 159 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERN 159 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHH
Confidence 8888999999999999999988888888777776543322 455666677788888888788888888
Q ss_pred HHHHHHHHhc
Q 012897 410 KAVKILETYW 419 (454)
Q Consensus 410 ~a~~~l~~~~ 419 (454)
.|...++..-
T Consensus 160 La~~fl~~~~ 169 (173)
T KOG4646|consen 160 LASAFLDKHV 169 (173)
T ss_pred HHHHHHHhhc
Confidence 8888777543
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.5e-05 Score=75.37 Aligned_cols=249 Identities=16% Similarity=0.137 Sum_probs=158.9
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC------CCCC
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK------PQPP 160 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~~ 160 (454)
+..+..+.+..+|.+|+..+..|... ....+. .....++++ .+.+..++..|+.+++...... ....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 55555666677777777776666542 112122 245567777 7778889988866655544332 1122
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc--
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-- 238 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 238 (454)
......++..+...+++....++..|..+|+.+-.-+.+.+...++.+++..+-..-. ..-+-..+..=+.++++
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~---ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT---AHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh---cccchHHHHhcCCcccCcc
Confidence 2334567788888999999999999999999887766666666666554442222110 01111122222222221
Q ss_pred ---------CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897 239 ---------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 309 (454)
Q Consensus 239 ---------~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 309 (454)
.++....++.+|.=..++.-|.+. -.+||..|+..++.|+..+|... ...+..|+++++++...|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHH
Confidence 122344567777778888888888 88999999999999998665533 235778999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897 310 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358 (454)
Q Consensus 310 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~ 358 (454)
|..|..+|..++.+.. +++..++.+...+.+..+++++....
T Consensus 427 RL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e 468 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE 468 (823)
T ss_pred HHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999877531 22234555666666666666554433
No 100
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.39 E-value=2.8e-05 Score=72.43 Aligned_cols=282 Identities=13% Similarity=0.087 Sum_probs=150.6
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
|++.-..+++++++++..++..+ ....+++ ..+..|-.+|+++. ...|..|+++|..++...|+.... +=
T Consensus 273 ls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~-~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~v-----cN 342 (898)
T COG5240 273 LSDKFEMVFLEAARAVCALSEEN---VGSQFVD-QTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVSV-----CN 342 (898)
T ss_pred hcCcchhhhHHHHHHHHHHHHhc---cCHHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceeee-----cC
Confidence 34444666666666666655442 0111111 13455556666666 566666666666666543332111 11
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
+-+-.++.+.+..+...|+..|..- +..+.-+.+ +..+..++ .+-+...+.-+..++..||...|..+..
T Consensus 343 ~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s-- 412 (898)
T COG5240 343 KEVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLS-- 412 (898)
T ss_pred hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHH--
Confidence 2333344445555544444444332 222222221 12222222 2223344444555555555544333332
Q ss_pred hchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch
Q 012897 165 RPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 165 ~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 243 (454)
.+..|...| +.+.-+...++..++..+....++..+ ..+..|..++.+.. ..+-++++|+-+.+..|...
T Consensus 413 --~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~ 483 (898)
T COG5240 413 --YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCE--YHQITVRILGILGREGPRAK 483 (898)
T ss_pred --HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCC
Confidence 233333333 345566777788888877776655444 34455666665433 33445566666655444222
Q ss_pred hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
. -...+..+..-+--. +..+|..|..+|..++....+ ......+...|.+++++.|.++|..|..++.++-.
T Consensus 484 ~---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 484 T---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred C---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 1 123455666655556 778999999999888763221 11223356678888999999999999999999854
No 101
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00071 Score=64.91 Aligned_cols=350 Identities=17% Similarity=0.156 Sum_probs=200.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
+..+.+=|.+.+ +.....|+.+++|+-. -+.+..+.. + |+ ++|.++ .+-++..++.+|..|.+..|..
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 344555556666 7888899999999876 344444332 1 33 555553 3678888888888888766542
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-------------CCChhHHHH
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-------------SNDEEVLTD 185 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-------------~~~~~v~~~ 185 (454)
+...+....++.+| .+.+..+...+...+..|+...+..........+..|..+.. -+.|.++..
T Consensus 183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 22234577888888 666677777888888888876543332222233333333221 135778888
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCc-----chhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897 186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPS-----VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258 (454)
Q Consensus 186 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~-----v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 258 (454)
.++.|.++-...+.... ..-.++++.++...+.+ ... ...+.+.-.-+++.+.+...+.+. ..+..|-++
T Consensus 261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 88888887433222211 11123455555555431 111 222334434445444443332222 466788888
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 012897 259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGC 337 (454)
Q Consensus 259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 337 (454)
+.+. +..+|.-|...++.++.... .. ..++.. .+.++..|+ ..|..+|+.|+..|..++...+... .
T Consensus 338 ls~r-E~NiRYLaLEsm~~L~ss~~-s~-davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------I 405 (938)
T KOG1077|consen 338 LSHR-ETNIRYLALESMCKLASSEF-SI-DAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------I 405 (938)
T ss_pred hhcc-cccchhhhHHHHHHHHhccc-hH-HHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------H
Confidence 8888 88999999999998887421 12 222222 666777887 5699999999999999988654432 3
Q ss_pred cHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhc------cHHHHHHHhcCCCHHHHHHH
Q 012897 338 IKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAE------GLEKIENLQSHDNNEIYEKA 411 (454)
Q Consensus 338 i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~l~~l~~~~~~~v~~~a 411 (454)
+.-+.+.+.+.++.+++-..-=..-+.+..- ..+.|...-...++.-.| ...++.++ --.+++++.+|
T Consensus 406 V~elLqYL~tAd~sireeivlKvAILaEKyA-----tDy~WyVdviLqLiriagd~vsdeVW~RvvQi-VvNnedlq~ya 479 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIVLKVAILAEKYA-----TDYSWYVDVILQLIRIAGDYVSDEVWYRVVQI-VVNNEDLQGYA 479 (938)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-----CCcchhHHHHHHHHHHhcccccHHHHHHhhee-EecchhhhHHH
Confidence 5566677777777766543322222222111 122232222233333222 22222222 22567888888
Q ss_pred HHHHHHhcCcCC
Q 012897 412 VKILETYWLEED 423 (454)
Q Consensus 412 ~~~l~~~~~~~~ 423 (454)
.+-+-.|++..-
T Consensus 480 ak~~fe~Lq~~a 491 (938)
T KOG1077|consen 480 AKRLFEYLQKPA 491 (938)
T ss_pred HHHHHHHHhhhH
Confidence 887777776433
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.38 E-value=0.00015 Score=67.20 Aligned_cols=245 Identities=28% Similarity=0.313 Sum_probs=168.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.+.++.++..|++.+..+-.. ..++.+..++.+.+ +.+|..|+.+|+.+-. .
T Consensus 49 ~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~-----------~ 104 (335)
T COG1413 49 LKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD-----------P 104 (335)
T ss_pred HHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC-----------h
Confidence 3456677888888888886555433 25889999999999 8999999998887764 2
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-----------hhhHHHHHHHHH
Q 012897 82 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----------KLSMLRNATWTL 149 (454)
Q Consensus 82 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----------~~~~~~~a~~~L 149 (454)
..++.++.++. +++..+|..+.++|+.+-... .+..++..+.+.. ...++..+...+
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 35788889888 589999999999999984321 2556666663322 113566666666
Q ss_pred HhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897 150 SNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 229 (454)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 229 (454)
..+-. ...++.+...+.+.+..++..+..+|..+.... ..+.+.+...+.+++..+|..++
T Consensus 174 ~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 174 GELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 65543 245677888888888889999998888877553 24556777888888888999988
Q ss_pred HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897 230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 309 (454)
Q Consensus 230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 309 (454)
..++.+-.. .....+...+... +..++..+...+... .. ......+...+.+....+
T Consensus 235 ~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~~~~~ 291 (335)
T COG1413 235 LALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLIDEANAV 291 (335)
T ss_pred HHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhhcchhhH
Confidence 888776532 2345677777777 666665555444411 10 122344555566667777
Q ss_pred HHHHHHHHHHhcCC
Q 012897 310 KKEAAWAISNATSG 323 (454)
Q Consensus 310 ~~~a~~aL~~l~~~ 323 (454)
+..+..++......
T Consensus 292 ~~~~~~~l~~~~~~ 305 (335)
T COG1413 292 RLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHHhhccc
Confidence 77777777766553
No 103
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=5.6e-06 Score=61.98 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=100.5
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
+.+..|+.-.+...+.+.+++...-|.|.+. +|.+...+.+.+++..++..|..++..+.+.++..|+|+|.+.. ..+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence 4567777777766558999999999999999 89999999999999999999999999999999999999997654 678
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
.+.+.++++.++..+ +++.+.+...++.++..|+...
T Consensus 94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 888999999999888 7777888889999999998765
No 104
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.33 E-value=0.00041 Score=66.00 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=202.0
Q ss_pred ccccCCCH---HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh-----
Q 012897 3 AGVWSDDS---SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN----- 74 (454)
Q Consensus 3 ~~L~s~d~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~----- 74 (454)
..|.++++ ......+.+|..++... ...+.++ ..++..+....+...+.+....++.+|.++.....+.
T Consensus 6 ~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~ 82 (415)
T PF12460_consen 6 ALLPDSDSSTDSNYERILEALAALSTSP--QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFED 82 (415)
T ss_pred hhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccch
Confidence 34444444 56678888888888662 3333332 2566666666654444677788888888876633222
Q ss_pred hHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------hh
Q 012897 75 TKVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------ER 136 (454)
Q Consensus 75 ~~~~~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~ 136 (454)
.....+..+++.+..+... . ++.+...+..++..++..-+..++.-. +..+..+.. ..
T Consensus 83 ~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~ 158 (415)
T PF12460_consen 83 NSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSS 158 (415)
T ss_pred HHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCcccc
Confidence 2334444578888776632 1 256666666777666654443333221 223333321 00
Q ss_pred ----hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 012897 137 ----AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 211 (454)
Q Consensus 137 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 211 (454)
.......-...++..+-. .........++..++.+.. ..++..+..++.+++.++...+.. + .++ +++.
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l~-~~l~ 232 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DLD-EFLD 232 (415)
T ss_pred ccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hHH-HHHH
Confidence 111222223333444333 3333234457777777754 456888889999998888552211 1 111 2333
Q ss_pred HHHHhc-CCCCCcchhhHHHHHhHhhcc----CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--
Q 012897 212 RLVELL-GHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-- 284 (454)
Q Consensus 212 ~L~~ll-~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~-- 284 (454)
.+...+ ....+..+..++.++..++.+ ..... ...+..|+.++.+ +.+...++..+.-+....++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l 304 (415)
T PF12460_consen 233 SLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVL 304 (415)
T ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhc
Confidence 344433 334455566665555444432 11111 1356678888876 46788888888877765222
Q ss_pred ------HHHHHHhC----CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897 285 ------QIQAVIDA----GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT 354 (454)
Q Consensus 285 ------~~~~l~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 354 (454)
.++.+.+. .++|.|++..+..+...+.....||.++..+-+...... .-..+++.|++.++.++++++.
T Consensus 305 ~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~~v~~ 383 (415)
T PF12460_consen 305 NKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDADVLL 383 (415)
T ss_pred CccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 23333333 356777777777666789999999999999766443221 1235899999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 012897 355 VCLEGLENILKVGEA 369 (454)
Q Consensus 355 ~al~~L~~l~~~~~~ 369 (454)
.++.+|..++...+.
T Consensus 384 s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 384 SSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHcCHH
Confidence 999999999986543
No 105
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.32 E-value=2e-05 Score=68.54 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=119.6
Q ss_pred cCCCHHHHHHHHHHHHHHhccC-CCCcHHHHHH--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 6 WSDDSSLQLEATTQFRKLLSIE-RSPPIEEVIQ--SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
.+.|++.|..|+..|..++.+. .......+.. ..++..+...+.+.. ..+...|+.++..++..-....+... ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 6788999999999999998875 1122222222 145667777887777 78999999999999873333333332 35
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC--CC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ--PP 160 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~ 160 (454)
++|.|++.+.++...++..|..+|..++...+.....+ ...+.... .+.++.++..++..+..+....+. ..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 78999999999999999999999999987655111111 23334444 788899999999999888776541 11
Q ss_pred hh---hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897 161 FD---QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202 (454)
Q Consensus 161 ~~---~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 202 (454)
.. ....+.+.+..++.+.++++|..+-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11 2356888999999999999999999999988765554433
No 106
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.30 E-value=4.8e-05 Score=65.75 Aligned_cols=267 Identities=14% Similarity=0.134 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897 140 SMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 219 (454)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 219 (454)
..+..-..++.......+........-+...|-++++.-++-.+.-|..|+.++......+.....+...-..++..+++
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n 202 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN 202 (432)
T ss_pred HHHHHHHHHHHHHccCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33444444444444443222111122334445555665567788889999999886655444444555566677777765
Q ss_pred --CCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-HHHHHHHH-hCC
Q 012897 220 --PSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNITAGN-RDQIQAVI-DAG 293 (454)
Q Consensus 220 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~-~~~ 293 (454)
+..+++...+.+++.++.... ..+ .++ ...+..++.+.+......|-+-++.++.|++... ...+..+. ..+
T Consensus 203 ~vg~~qlQY~SL~~iw~lTf~~~-~aq-di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~ 280 (432)
T COG5231 203 YVGVKQLQYNSLIIIWILTFSKE-CAQ-DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND 280 (432)
T ss_pred hhhhhhhHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc
Confidence 456889999999999986433 332 222 2455667777766546678888999999999833 33444433 333
Q ss_pred ChHHHHHHhhhc--chhhHHHHHHHHHHhcCC---------------------CCH--------HHHHHHHHc--CCcHH
Q 012897 294 LVGPLVNLLQNA--EFDIKKEAAWAISNATSG---------------------GTH--------EQIKYLVRE--GCIKP 340 (454)
Q Consensus 294 ~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~---------------------~~~--------~~~~~l~~~--~~i~~ 340 (454)
+.+....+.+.+ |.+++...-..=..+... .++ .+...+.+. ..++.
T Consensus 281 ~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~ 360 (432)
T COG5231 281 ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKV 360 (432)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHH
Confidence 544444444432 555543322222111110 000 112222222 24677
Q ss_pred HhhccCCCCHH-HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 341 LCDLFVCPDPR-IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 341 L~~~l~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
|.++++..++. ....|+.-+..+++..++ ....+..-|+-+.|.+|++|++++|+-.|.+.++.+.
T Consensus 361 L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE-------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 361 LKKYLQSNNPNTWICVACSDIFQLVRASPE-------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhcCCCCceEeeeHhhHHHHHHhCch-------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 77888877766 556677778888776544 4677888999999999999999999999999988876
Q ss_pred Cc
Q 012897 420 LE 421 (454)
Q Consensus 420 ~~ 421 (454)
.+
T Consensus 428 ~~ 429 (432)
T COG5231 428 SS 429 (432)
T ss_pred hh
Confidence 54
No 107
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.001 Score=66.43 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCC-CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897 7 SDDSSLQLEATTQFRKLLSIER-SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 85 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 85 (454)
.+|+.....|++.+..+++.-. ...-....+.=+++.+...++++- -.+|..|+|+++.++.. +....-.-..+++
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale 505 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALE 505 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHH
Confidence 3456667777887777764321 122223333335666777778888 89999999999999952 2222222334677
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhhCCChhh
Q 012897 86 IFVKLLA-SPSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 86 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
...++|. +.+..++..|+.+|..+.++.+..
T Consensus 506 ~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 506 LTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 7778777 677889999999999888766543
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.26 E-value=0.0002 Score=66.37 Aligned_cols=249 Identities=24% Similarity=0.294 Sum_probs=170.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
..++.+.+.+.+.+ +.++..+.+.++.+-. .-.++.+..++.+.++.+|..++.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 36888999999997 8999999999777664 246899999999999999999999888872 222
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCCh------------hHHHHH
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDE------------EVLTDA 186 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~v~~~a 186 (454)
.++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 3778888885578899999999999998654 335666666666542 234444
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh
Q 012897 187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 266 (454)
Q Consensus 187 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~ 266 (454)
...+..+. ....++.+...+.+....+|..+..+|+.+.... ..+...+...+.+. +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44444332 1245667777888888888899988888887654 24456777888888 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897 267 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346 (454)
Q Consensus 267 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~ 346 (454)
+|..++.+++.+-.. .....++..+...+..++..+..++...- .. .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence 888888888876532 24556777777777777666665555110 10 11333444455
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 012897 347 CPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 347 ~~~~~v~~~al~~L~~l~ 364 (454)
+.+..++..+...+..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 555555555555555543
No 109
>PF05536 Neurochondrin: Neurochondrin
Probab=98.25 E-value=0.00013 Score=71.07 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=163.2
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---hHHHHHhcCChHHHHHHhchh------hhhhHHHHHHHHHHhhc
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---CRDLVLSQGALIPLLAQLNER------AKLSMLRNATWTLSNFC 153 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~l~~~l~~~------~~~~~~~~a~~~L~~l~ 153 (454)
.++..+.+|+..+++-|..++..+.+++...+. .++.+.+.=+...+-++|... +....+.-++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467778899988888899999999999876553 234567766678888888532 34567888899999999
Q ss_pred CCCCCCChhhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHH
Q 012897 154 RGKPQPPFDQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTV 232 (454)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 232 (454)
..+.........+-+|.++.++.+.+. .+...++.+|..++.. +...+.+++.|.++.|...+.+ .+.....|+.++
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 976555556667889999999988777 9999999999999955 4455789999999999999877 667788899999
Q ss_pred hHhhccCccchhh---hhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH-HHHHHh----CCChHHHHHHhhh
Q 012897 233 GNIVTGDDFQTQC---IITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ-IQAVID----AGLVGPLVNLLQN 304 (454)
Q Consensus 233 ~~l~~~~~~~~~~---~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~----~~~i~~L~~ll~~ 304 (454)
.+++......... -.-..+++.+...+... ....+..++..|..+....+.. ...... ..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9988654311100 00013445555666655 6667788888888887654211 111111 2234445555555
Q ss_pred c-chhhHHHHHHHHHHhcC
Q 012897 305 A-EFDIKKEAAWAISNATS 322 (454)
Q Consensus 305 ~-~~~v~~~a~~aL~~l~~ 322 (454)
. .+.-|..+......+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4 45555555555554433
No 110
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.25 E-value=0.00018 Score=62.32 Aligned_cols=230 Identities=17% Similarity=0.200 Sum_probs=153.4
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897 46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLS 122 (454)
Q Consensus 46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 122 (454)
++++.-+ +-.+.-|+.++.++.. .++.|...- +...-..++..+++ +..+++-+.+.+++.++. ++.+.+.+-.
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 4444445 6678888999999988 666666553 44456778888876 668899999999999864 4444433322
Q ss_pred -cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh--hhhhc-hHHHHHHhhcC--CChhHHHHHHHHHHHhccC
Q 012897 123 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF--DQVRP-ALPALAQLVHS--NDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 123 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-~l~~l~~ll~~--~~~~v~~~a~~~L~~l~~~ 196 (454)
.+.+..++++......+.+.+-++.++.+++...+...+ ....+ +.+..-.++.. .|++++...-..=..+..+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 234667778877777889999999999999984322211 12223 33333333332 2444433322211111110
Q ss_pred ---------------------Ch---------HHHHHHHH--hCcHHHHHHhcCCCCCc-chhhHHHHHhHhhccCccch
Q 012897 197 ---------------------TN---------DKIQAVIE--AGVCPRLVELLGHPSPS-VLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 197 ---------------------~~---------~~~~~~~~--~~~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~ 243 (454)
++ .+.+.+.+ ..++..|..+++..++. ...-||.-++.+++..|+..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 00 11222222 14678888889887665 67778999999999999888
Q ss_pred hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
..+.+.|+-..++.++.++ +++||-+|..++..+.
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 8888999999999999999 9999999999987665
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.24 E-value=0.00047 Score=64.61 Aligned_cols=307 Identities=12% Similarity=0.119 Sum_probs=181.4
Q ss_pred HHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhh
Q 012897 61 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLS 140 (454)
Q Consensus 61 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 140 (454)
+++...+...+++.+..+ .|.|-..+++.-+.+.-.+++.+..++..+- ...... ..+..|-.+| ......
T Consensus 248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL-~s~rv~ 318 (898)
T COG5240 248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFL-KSTRVV 318 (898)
T ss_pred HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHH-hcchHH
Confidence 444555555455554443 4666667777667777778888888764331 111111 1244444455 666778
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897 141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220 (454)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 220 (454)
.+-.|+.+|..|+...|.... -+-+-+-.++.+.+..+..+|+..|..-. .++.+..++ ..+..++.+-
T Consensus 319 ~rFsA~Riln~lam~~P~kv~----vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv-----~~I~sfvhD~ 387 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVS----VCNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLV-----NLIPSFVHDM 387 (898)
T ss_pred HHHHHHHHHHHHHhhCCceee----ecChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHH-----HHHHHHHHhh
Confidence 899999999999876543322 22234556677777777777777765533 334444333 3444445444
Q ss_pred CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
+...+.-+..++..++-..+.... ..+..|...|.....-+.++.+.-++..+....|+.... ++..|+.
T Consensus 388 SD~FKiI~ida~rsLsl~Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~ 457 (898)
T COG5240 388 SDGFKIIAIDALRSLSLLFPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCT 457 (898)
T ss_pred ccCceEEeHHHHHHHHhhCcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Confidence 445555555555566554443322 345667777765546788999999999888766665533 4566888
Q ss_pred HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q 012897 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADV 380 (454)
Q Consensus 301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 380 (454)
++.+.. --+-+.+.|+-+-..++.... ...++..+..-+--.+..++..|+.||..+.-..+..
T Consensus 458 fIEDce--y~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------- 521 (898)
T COG5240 458 FIEDCE--YHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---------- 521 (898)
T ss_pred HHhhcc--hhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------
Confidence 887642 223344455544443321100 0113455555555567889999999998875322211
Q ss_pred cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 381 NQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 381 ~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
+.-......+.+.+++.+++|+++|.-.++.+-
T Consensus 522 ------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 ------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 111122345778899999999999998887654
No 112
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.0043 Score=61.65 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=128.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
+.+.+...+..|++.+...+... .+ .. -..+.+++.+.+.+ .+++...-.-|...+...|+..-. .+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-ms-----sLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-MS-----SLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-hH-----HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 56778888999998887766554 22 21 24677888888667 899998888888888866633222 47
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
+.+.+=++++|+.+|..|+++++.+= . ++.-.. .++++.+++ .++++.||+.|+.++..+-+-+ ......
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~-~-~el~~~-----~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR-V-KELLGN-----IIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC-h-HHHHHH-----HHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 88888899999999999999999882 2 222122 467788888 8889999999999999998653 233334
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
.|.+..+..++.+.+|.+..+|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777888888999999999999999988644
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.22 E-value=0.00023 Score=67.83 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=170.0
Q ss_pred HHHHHHhccCCCCcHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 18 TQFRKLLSIERSPPIEEVIQSGVVPRFVEFL---------MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 18 ~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
.+|+-+... ....+.+.....+..|.++- ....++.+...|++||+|+...++..+..+.+.|+.+.++
T Consensus 3 ~~LRiLsRd--~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 3 ETLRILSRD--PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHccC--cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 344433333 34555566666677777665 3333489999999999999998999999999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHHhchh----------------hhhhHHHHHH
Q 012897 89 KLLASP-----SDDVREQAVWALGNVAGDSPRCRDLVLSQ-GALIPLLAQLNER----------------AKLSMLRNAT 146 (454)
Q Consensus 89 ~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~ 146 (454)
..|+.. +.++.....++|.-++...+..+..+.+. +++..++..+... .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999875 78888889999988887777777666554 5666666655210 1445677788
Q ss_pred HHHHhhcCCCCCCChhhh----hchHHHHHHhh---c--CCChhHHHHHHHHHHHhccCChHH-------HH----HHHH
Q 012897 147 WTLSNFCRGKPQPPFDQV----RPALPALAQLV---H--SNDEEVLTDACWALSYLSDGTNDK-------IQ----AVIE 206 (454)
Q Consensus 147 ~~L~~l~~~~~~~~~~~~----~~~l~~l~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~-------~~----~~~~ 206 (454)
.++.|+....+....... ..++..+..++ . .+......+++.+|.|+--..... .. ....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 888999877644333222 33444444442 1 123456778888888773211111 00 0011
Q ss_pred hCcHHHHHHhcCC-----C---CCcchhhHHHHHhHhhccCccchhhhh----------------ccCChHHHHHhhcCC
Q 012897 207 AGVCPRLVELLGH-----P---SPSVLIPALRTVGNIVTGDDFQTQCII----------------TYGALPYLLGLLTHS 262 (454)
Q Consensus 207 ~~~i~~L~~ll~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~~L~~~ 262 (454)
...+..++.+|.. . -.+.....+.+|..++......++.+. ...+-..|+.++.++
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345555555532 1 124556677777787776543333221 224567899999998
Q ss_pred cchhHHHHHHHHHHHHhcCCHH
Q 012897 263 HKKSIKKEACWTISNITAGNRD 284 (454)
Q Consensus 263 ~~~~v~~~a~~~L~nl~~~~~~ 284 (454)
.+.+|..+...+-.+|..+..
T Consensus 321 -~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 321 -DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred -CchHHHHHHHHHHHHHhhhHH
Confidence 699999999999888865443
No 114
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00055 Score=71.19 Aligned_cols=342 Identities=16% Similarity=0.154 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
.-+..|+.-+..+++.. .....-.-..++|.|.+.=-+++ +.+|..-..+...+..++....+.... .++.-|+.-
T Consensus 972 nSk~GaAfGf~~i~~~a--~~kl~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~ 1047 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQA--GEKLEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVN 1047 (1702)
T ss_pred hcccchhhchHHHHHHH--HHhhhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHh
Confidence 33444555555555442 11111122346788888777788 888877777777777755566555554 567778888
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChh--hHHHHHhcCChHHHHHHhchhhhhhHHHHH---HHHHHhhcCCC-C----CCC
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPR--CRDLVLSQGALIPLLAQLNERAKLSMLRNA---TWTLSNFCRGK-P----QPP 160 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a---~~~L~~l~~~~-~----~~~ 160 (454)
+.+....+|+.++.+|..|....+. ..+.+.+ ....+.+.+ ++-.+.+|+.+ +.+|+.+|-.. . ...
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 8888999999999999999876553 2233221 234444444 55566676654 44555554332 1 112
Q ss_pred hhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchh-----------hH
Q 012897 161 FDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-----------PA 228 (454)
Q Consensus 161 ~~~~~~~l~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~-----------~a 228 (454)
......++|.+.. -+-+.-++++..++.++..++............ .+++.|+.....-++.+.. +|
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ea 1203 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEA 1203 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHH
Confidence 2233445555442 112567899999999999999877654443222 5666666666554443321 22
Q ss_pred HHHHhH-hhccCcc--chhhhh-------ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHH
Q 012897 229 LRTVGN-IVTGDDF--QTQCII-------TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPL 298 (454)
Q Consensus 229 ~~~L~~-l~~~~~~--~~~~~~-------~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 298 (454)
+..+.. .+..++- ....++ =...+|.+.++++.+-.-..|..++..+.-++........+.. -..+..+
T Consensus 1204 lDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al 1282 (1702)
T KOG0915|consen 1204 LDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRAL 1282 (1702)
T ss_pred HHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHH
Confidence 222111 1111110 000011 1245677777777664556677777777776642111111111 1245566
Q ss_pred HHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 299 VNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 299 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
+..+++.++.+++.-+.|.+.++....+++.+.++ +.+..-+-.+++.....++..+.+|...
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi-----e~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI-----ETLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH-----HHHHHHHhccCCCccchhHHHHHHHHHh
Confidence 66777789999999999999999998887777644 3333333223322224555555655443
No 115
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.19 E-value=2.8e-05 Score=78.41 Aligned_cols=302 Identities=17% Similarity=0.121 Sum_probs=187.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG---DSPRC 116 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~ 116 (454)
+++.+...++.-...+.+..|+..|..++....+ ...=.-++|.++.++.++...+|..|+.+|..+.. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3566777777655578899999999998872211 11112478999999999999999999999988753 22322
Q ss_pred HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
-..++..-.++.|-.++.+.....++..-+..|..|+... ..+. ....-.....++...+.+. . --.+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--~rFl-e~~q~~~~~g~~n~~nset-------~--~~~~ 567 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--YRFL-ELTQELRQAGMLNDPNSET-------A--PEQN 567 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--HHHH-HHHHHHHhcccccCccccc-------c--cccc
Confidence 2333333356677777744355556666666666665431 0000 0000001111223333220 0 0011
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
.....+.+.. .+-+.+..++.++.+-|+..-+..|.-||.+.... --+.-+++.|+..|.+. ++.+|..-...+.
T Consensus 568 ~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 568 YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIV 642 (1431)
T ss_pred cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence 1122232332 45566777888888888988888888888644321 12335788999999998 9988887777776
Q ss_pred HHhc--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897 277 NITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT 354 (454)
Q Consensus 277 nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 354 (454)
-++. +.. -++..++|.|.+-+.++.+-|...|+.+|..|+..+--+ +..-.+.++...-+|-.++.-+|.
T Consensus 643 gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~---K~~v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 643 GVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR---KPAVKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred ceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc---hHHHHHHHHhhhhheeCchHHHHH
Confidence 5554 211 123457888889999999999999999999998764321 111122445555567788888999
Q ss_pred HHHHHHHHHHHhhhh
Q 012897 355 VCLEGLENILKVGEA 369 (454)
Q Consensus 355 ~al~~L~~l~~~~~~ 369 (454)
.++..|..+.+.-..
T Consensus 715 ~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 715 AVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999888888765443
No 116
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.17 E-value=4.2e-06 Score=50.30 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.1
Q ss_pred CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897 71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 111 (454)
Q Consensus 71 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 111 (454)
+++.+..+++.|+++.|+++|.++++++++.++|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 117
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=7.4e-05 Score=71.72 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=140.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
+...|.+.|++.+++.++.-++.-|+-...++... .+.+.+-..|...+...-+.|...++-+...+.. .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence 44556666665554566666655555444322111 1234445555555544445554444444322211 01
Q ss_pred HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
.+..++..-....++.+++-..--+.-..... ..+.=+.+-+++.+.||-+|.....++.---....
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg- 551 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG- 551 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-
Confidence 23344444444445555554333222222111 12444567788888888888887776643211111
Q ss_pred HHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 200 KIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 200 ~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
+.+++..|++. .++.+.+||.+|..+|+.++...++. .+..+.+|..+.++.||..++.+|+-.
T Consensus 552 ------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIa 616 (929)
T KOG2062|consen 552 ------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIA 616 (929)
T ss_pred ------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhh
Confidence 12567777777 67889999999999999998766633 356777776665999999999999998
Q ss_pred hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897 279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 325 (454)
|.+.... ..+..|-.+..+...-||+.|+-++.-+....+
T Consensus 617 CAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 617 CAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 8864321 123444445556677788888888877765443
No 118
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.13 E-value=5.3e-06 Score=49.84 Aligned_cols=41 Identities=37% Similarity=0.713 Sum_probs=37.7
Q ss_pred CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
++++++.+++.|+++.|++++.++++++++.|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46778889999999999999999999999999999999963
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.10 E-value=3.3e-05 Score=67.22 Aligned_cols=187 Identities=18% Similarity=0.116 Sum_probs=121.2
Q ss_pred cCCChhHHHHHHHHHHHhccCC--hHHHHHHHH--hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCC
Q 012897 176 HSNDEEVLTDACWALSYLSDGT--NDKIQAVIE--AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA 251 (454)
Q Consensus 176 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 251 (454)
.+.+.+.+..++..|..++... ......+.. ..++..+...+.+....+...|+.++..++.......... -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678888999999998887655 222222222 1566777888888888899999999999997655444433 2367
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCC-hHHHHHHhhhcchhhHHHHHHHHHHhcCCCC--HHH
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNATSGGT--HEQ 328 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~ 328 (454)
++.|+..+.++ ...++..|..+|..++...+-. ..+ .+.+.....+.++.+|..++..+..++.... ...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899999888 8889999999999999864411 112 5567777888899999999999999987654 111
Q ss_pred HH-HHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 329 IK-YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 329 ~~-~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
.. ...-..+.+.+..++.+++++||..+-.++..+.+..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 1111346888999999999999999999999998765543
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.002 Score=63.95 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=105.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++...+.|.+++.-.-..|...+... +. .++- .++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 61 iK~~~trd~ElKrL~ylYl~~yak~~--P~--~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~----- 126 (757)
T COG5096 61 IKNVATRDVELKRLLYLYLERYAKLK--PE--LALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG----- 126 (757)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhccC--HH--HHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----
Confidence 34556788999999999999988875 21 1221 4788899999999 9999999999987764 23222
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.+++.+.+++.++++.+|..|+.++.++-.-++ +...+.|.+..+..++ .+.++.+...|+.+|..+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999975544 3444555566666666 889999999999999998755
No 121
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00077 Score=64.71 Aligned_cols=291 Identities=12% Similarity=0.112 Sum_probs=175.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+-|.|.|+..+.-|+.++.++-+.+ ....+ -+-+-++|.++++ +-++..|+.||..+...+|+.. -..
T Consensus 118 nDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~ 186 (938)
T KOG1077|consen 118 NDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPG 186 (938)
T ss_pred hhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---Chh
Confidence 3456777777778888877775442 22222 2223366666553 5688899999999988665542 234
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc------------hhhhhhHHHHHHHHH
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN------------ERAKLSMLRNATWTL 149 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~------------~~~~~~~~~~a~~~L 149 (454)
+....++.+|.+.+..+...+...+-.++...++........ .+..|.+... .-+.+-+....+.+|
T Consensus 187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlL 265 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLL 265 (938)
T ss_pred hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHH
Confidence 688999999999888888888888888886655432211100 1222222221 013466777777777
Q ss_pred HhhcCCCCCCChhhhhchHHHHHHhhcCC----C---hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897 150 SNFCRGKPQPPFDQVRPALPALAQLVHSN----D---EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222 (454)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~----~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 222 (454)
.++-...+.........++..++...+.. + ...+...+.-..+++.+-+..-+ ++. ..+..|-+++.+.+.
T Consensus 266 q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~-ll~-~~~~~Lg~fls~rE~ 343 (938)
T KOG1077|consen 266 QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE-LLS-RAVNQLGQFLSHRET 343 (938)
T ss_pred HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH-HHH-HHHHHHHHHhhcccc
Confidence 77632222222333344555554444421 1 12233334434444433332212 222 467788899999999
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 302 (454)
.+|.-++..++.++.... ....+-. . ...++..|+...+..+|+.|+-.|-.+|..+ +.+ .++..|++.+
T Consensus 344 NiRYLaLEsm~~L~ss~~-s~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak-----~IV~elLqYL 413 (938)
T KOG1077|consen 344 NIRYLALESMCKLASSEF-SIDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAK-----QIVAELLQYL 413 (938)
T ss_pred cchhhhHHHHHHHHhccc-hHHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHH-----HHHHHHHHHH
Confidence 999999999999997532 3333322 2 7888999996658899999999999998632 222 2455567777
Q ss_pred hhcchhhHHHHHHHH
Q 012897 303 QNAEFDIKKEAAWAI 317 (454)
Q Consensus 303 ~~~~~~v~~~a~~aL 317 (454)
..-++.+|+...-=+
T Consensus 414 ~tAd~sireeivlKv 428 (938)
T KOG1077|consen 414 ETADYSIREEIVLKV 428 (938)
T ss_pred hhcchHHHHHHHHHH
Confidence 666666665544433
No 122
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0027 Score=64.07 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=158.8
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
++++..|.+.+++.+ ..++-.|+..++.++...|.. + ...++...+.++.- +++..-..++.+|+.++...--.
T Consensus 340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 357888889999999 799999999999999866622 2 12356667776654 34666668999999998533211
Q ss_pred HHHHHhcCChHHHHHHhchh-------hhhhHHHHHHHHHHhhcCCCCCCCh-hhhhchHHH-HHHhhcCCChhHHHHHH
Q 012897 117 RDLVLSQGALIPLLAQLNER-------AKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPA-LAQLVHSNDEEVLTDAC 187 (454)
Q Consensus 117 ~~~~~~~~~i~~l~~~l~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~-l~~ll~~~~~~v~~~a~ 187 (454)
-..+. .+++.+++-+..+ ....+|..||.+++.+++....... .......+. +...+-+.+-.+|+.|.
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 11111 1355566555322 2457999999999999987522211 122223332 22334456677788888
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhH
Q 012897 188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSI 267 (454)
Q Consensus 188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v 267 (454)
.++....-..... . .+++ |+...+.-....|.++...++.-....+.+.+.+++ +.+.+-+.+- +..+
T Consensus 493 AAlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 493 AALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhcccccc-cHHH
Confidence 8886654321111 0 1111 222222223345566655565555555544444333 2223336677 8899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
|+.++++|.+++...++. .....++.++......+...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999999999988755543 235678888888888877777655555555544
No 123
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0015 Score=63.65 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=167.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
..+.+-.++.+..+.+.-.+++++.++....+. .... .+..+--++ +.+...+|..|..+|..++...|.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 455566667777777777888888887543321 1111 233333333 6777888888888888888765332211
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
+-.-|-.++.+.+-.+-..|...|..-. .......++ ..+..++.+-+.+.+.-+..++..+|...+.
T Consensus 320 ----cN~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm-----~qI~~fv~disDeFKivvvdai~sLc~~fp~- 387 (865)
T KOG1078|consen 320 ----CNLDLESLITDSNRSIATLAITTLLKTG--TESSVDRLM-----KQISSFVSDISDEFKIVVVDAIRSLCLKFPR- 387 (865)
T ss_pred ----cchhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHH-----HHHHHHHHhccccceEEeHHHHHHHHhhccH-
Confidence 1223445555555555555555554432 222333232 2333333333344444444445555543331
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
...+.+..|..+|+....-+.++....++..+...+++.. ..++..|+..+.+. +...-+...|.-+..
T Consensus 388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDc--e~~~i~~rILhlLG~ 456 (865)
T KOG1078|consen 388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDC--EFTQIAVRILHLLGK 456 (865)
T ss_pred ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 2235677888888765466788888888888887666544 34566788888754 233334555554444
Q ss_pred CCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC
Q 012897 323 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 402 (454)
Q Consensus 323 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 402 (454)
.++.. ......+..+.....-.+..++..++.+|.++...++... ....-.+.+.+++
T Consensus 457 EgP~a----~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D 514 (865)
T KOG1078|consen 457 EGPKA----PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLND 514 (865)
T ss_pred cCCCC----CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcC
Confidence 32111 0122356666666666788999999999999983222211 2223457788999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 012897 403 DNNEIYEKAVKILETYW 419 (454)
Q Consensus 403 ~~~~v~~~a~~~l~~~~ 419 (454)
.+.+++++|.-.+..+.
T Consensus 515 ~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 515 SDDEVRDRATFYLKNLE 531 (865)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 99999999988887666
No 124
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0041 Score=62.32 Aligned_cols=303 Identities=17% Similarity=0.155 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCh
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM------RE-DYPQLQFEAAWALTNIASG--TSENTKVVIDHGAV 84 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i 84 (454)
.+|...+..+.+..+.+.. .++++.+++.+. .+ +++.-+..|+.++++++.. .+..-+..++.=++
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 3556666666655423332 356777777777 22 2367788889999988851 11121222233346
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC---h
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP---F 161 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~---~ 161 (454)
+.+...++++.--+|..|+|+++.++...-. ....-..++....+.+..+.+-.|+..|+.+|..+..+.+... .
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6677778888899999999999999843322 2222223466777777567888999999999999998864332 2
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhcCC---CCC---cchhhHHHHHhH
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLGH---PSP---SVLIPALRTVGN 234 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~---~v~~~a~~~L~~ 234 (454)
....+.++.++++.+..+.+....++..+ +..+..-......+.. .+...+.+++.. .++ +-...|..+|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 33455666666777665555555544433 3333322222222222 566667777763 222 223344444443
Q ss_pred hh---ccCccchh--hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhh
Q 012897 235 IV---TGDDFQTQ--CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDI 309 (454)
Q Consensus 235 l~---~~~~~~~~--~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 309 (454)
+. ..-+.... .-++..+++.+-.+|++. -.++-++++..+.++....++.-..+. ++++.+.+.+.....+-
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dy 698 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDY 698 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHH
Confidence 33 21111111 122335667777777777 777888888888877764433322333 46777888887777777
Q ss_pred HHHHHHHHHHhcCCCCHH
Q 012897 310 KKEAAWAISNATSGGTHE 327 (454)
Q Consensus 310 ~~~a~~aL~~l~~~~~~~ 327 (454)
-....-+|.|+...+.+.
T Consensus 699 f~d~~~~l~N~vt~g~~~ 716 (1010)
T KOG1991|consen 699 FTDMMPALHNYVTYGTPS 716 (1010)
T ss_pred HHHHHHHHhhheeeCchh
Confidence 788888999888877653
No 125
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0021 Score=58.42 Aligned_cols=239 Identities=13% Similarity=0.138 Sum_probs=162.9
Q ss_pred HHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-----c----hhhHHHHhCCChHHH
Q 012897 17 TTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-----S----ENTKVVIDHGAVPIF 87 (454)
Q Consensus 17 ~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L 87 (454)
++.+.-++.. +...-.+++.+.++.|+.+|.+.+ .++....+..|..++..+ . ...+.+++.++++.|
T Consensus 105 IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 105 IQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3334444433 344446788999999999999999 899999999999998632 2 345667788999999
Q ss_pred HHhhCCCCH------HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhcCCCCC-C
Q 012897 88 VKLLASPSD------DVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQ-P 159 (454)
Q Consensus 88 ~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~-~ 159 (454)
++.+..-++ .-..+++..+-|+....+.....+.+.|.+.-|+..+. ...-..-..++..++.-+..+... .
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 998865332 33456677888998888888888888888888777553 223445667788888888777632 2
Q ss_pred ChhhhhchHHHHHHhh----cCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897 160 PFDQVRPALPALAQLV----HSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 230 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll----~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 230 (454)
...-.-.++..++.-+ .++ ..+..++...+|+.+.... .+...++...+++...-+++. ....+..+++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 2222223444444333 222 2456777778888776554 445667777777766666655 5566788999
Q ss_pred HHhHhhccCc--cchhhhhccCChHHHHHhhc
Q 012897 231 TVGNIVTGDD--FQTQCIITYGALPYLLGLLT 260 (454)
Q Consensus 231 ~L~~l~~~~~--~~~~~~~~~~~l~~L~~~L~ 260 (454)
+|-....+.+ ..+..+++..++..++..+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9988887766 45666777777777666653
No 126
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0066 Score=55.37 Aligned_cols=262 Identities=12% Similarity=0.077 Sum_probs=179.7
Q ss_pred HHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC---C-------hhhhhchHHHHH
Q 012897 103 VWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP---P-------FDQVRPALPALA 172 (454)
Q Consensus 103 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~-------~~~~~~~l~~l~ 172 (454)
+.-+.-++ ..|..-..+++.++++.++.+| .+.+.++....+..+..|+..+... . .....++++.|+
T Consensus 105 IQ~mhvlA-t~PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 105 IQEMHVLA-TMPDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHhhh-cChHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 33344444 4455667888999999999999 8888999999999999998776111 1 112356777777
Q ss_pred HhhcCCChh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchh
Q 012897 173 QLVHSNDEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 173 ~ll~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
+-+..-|.. -....+..+-|+..-.+......++.|++..|+..+.. +-......|..+++-+...+.+...
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 776543333 35667778888888888888888888999998886643 3445667777888888877766666
Q ss_pred hhhccCChHHHHHhhc-----CCc---chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897 245 CIITYGALPYLLGLLT-----HSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L~-----~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 316 (454)
.+-...++..+++-+. ++. ..+.-.+..-+|+.+... +.++..+++..++..+.-+++. ....+..+..+
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 6666778888887762 211 234555666667666655 5666677766677655444444 56677888888
Q ss_pred HHHhcCCCC-HHHHHHHHHcCCcHHHhhccC-C---------CCHHHHHHHHHHHHHHHHhhh
Q 012897 317 ISNATSGGT-HEQIKYLVREGCIKPLCDLFV-C---------PDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 317 L~~l~~~~~-~~~~~~l~~~~~i~~L~~~l~-~---------~~~~v~~~al~~L~~l~~~~~ 368 (454)
|-....+.. .+.+..+.+-.++..+...+- . ...+.-++.+..|..+++...
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~ 403 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD 403 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence 988776532 366777777777776666543 1 223567788888888887653
No 127
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=2.3e-05 Score=56.61 Aligned_cols=87 Identities=29% Similarity=0.438 Sum_probs=69.4
Q ss_pred HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 41 VPRFVEFL-MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 41 l~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
++.|++.| ++++ +.+|..++++|+.+-. + ..++.|..+++++++.+|..++++|+.+- .
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~------ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--D------ 60 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C------
Confidence 57899999 6666 9999999999995432 1 35899999999999999999999999883 1
Q ss_pred HHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLS 150 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 150 (454)
...++.|.+++.++.+..++..+..+|+
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1258889998866667778888888774
No 128
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=1e-05 Score=52.39 Aligned_cols=55 Identities=25% Similarity=0.600 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 265 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 265 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
+.+|..|+|+|++++...++...... ..+++.|+.+++++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999998887777776655 56899999999999889999999999875
No 129
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.96 E-value=0.0012 Score=65.26 Aligned_cols=316 Identities=12% Similarity=0.082 Sum_probs=189.7
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 85 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 85 (454)
.++-|.+...+.+.+.+.++.. .....+. .-.+...+..+.-...+-++..|+++++..++ ...... ...+++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild 533 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSST--VINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILD 533 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhh--ccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHH
Confidence 4556777778888888777652 1111111 11344555555555547889999999888884 222211 1246778
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh-chhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 86 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
.|.++....+.++....+.+|+..+..+|+.... .+..+.+....+. ....++.+...+-.++..++... ...-.+.
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence 8888888888999999999999999888865433 3334455555544 35567777777777777777642 2333344
Q ss_pred hchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccC
Q 012897 165 RPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~ 239 (454)
..++|.+++.+..++ .....-++..|..+.++.+.-....+-.-++|.+.++.-+ ++......+-.||..+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 678999999998776 5566667777777776654333444444677888887644 56678888888888888654
Q ss_pred ccchhhhhccCC------hHHHHHhhcCCcchhHHHHHHHHHHHHh----cCCHHHHHHHHhCCChH-HHHHHhhhcchh
Q 012897 240 DFQTQCIITYGA------LPYLLGLLTHSHKKSIKKEACWTISNIT----AGNRDQIQAVIDAGLVG-PLVNLLQNAEFD 308 (454)
Q Consensus 240 ~~~~~~~~~~~~------l~~L~~~L~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~ 308 (454)
.++...--..++ +..+..+|.. ++-..++..++.+. .+-+.-....++. ++. .+.++.+.+...
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 433221112222 2333344432 33334444444443 2222212221111 222 233444456788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHH
Q 012897 309 IKKEAAWAISNATSGGTHEQIKYLVR 334 (454)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~ 334 (454)
+......++.++...........+.+
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 88888999999987654444444433
No 130
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00059 Score=66.28 Aligned_cols=260 Identities=14% Similarity=0.153 Sum_probs=156.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh----
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC---- 116 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---- 116 (454)
.+.+-.++.+.. ..+...|+.++.++...+...... .+..|-.+++++...+|..|.++|..++...|..
T Consensus 247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 566777777777 788888888888877644333222 5677777778888888888888888887544321
Q ss_pred ----HHHHHhcC---ChHHHHHHhch---hhhhhHHHHHHHHHHhhcCCCCCCCh-----------hhhhchHHHHHHhh
Q 012897 117 ----RDLVLSQG---ALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGKPQPPF-----------DQVRPALPALAQLV 175 (454)
Q Consensus 117 ----~~~~~~~~---~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~-----------~~~~~~l~~l~~ll 175 (454)
...+-..+ ....+..+|.. ..-..+.......+..++.+...... ......++.|..+|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11111111 11222333321 11223444444455555444311111 11134555666666
Q ss_pred cC-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHH
Q 012897 176 HS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY 254 (454)
Q Consensus 176 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 254 (454)
+. +.-+-..+...++..+....++... .++..|..++.+. +...-+.++|.-+....+. .......+..
T Consensus 401 r~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---a~~Pskyir~ 470 (865)
T KOG1078|consen 401 REEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---APNPSKYIRF 470 (865)
T ss_pred HhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---CCCcchhhHH
Confidence 54 3345566677777776665444433 3445566655443 3556667777777665442 2233456677
Q ss_pred HHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 255 LLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 255 L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+.....-. +..+|..|..++.++...++.. ...+...|.+++.+.+.++|..|..++.++..
T Consensus 471 iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 471 IYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred Hhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 77776666 8889999999999998544322 24566778888999999999999999988863
No 131
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.92 E-value=5.2e-05 Score=55.06 Aligned_cols=95 Identities=18% Similarity=0.308 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897 267 IKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346 (454)
Q Consensus 267 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~ 346 (454)
.|+.++++|+.++.+-+......+ ..+++.++..+.+++++||..|+.+|.|++.....+...++. .+.+.|..++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 367788888888775555555555 358999999999999999999999999998865544444433 47888999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 012897 347 CPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 347 ~~~~~v~~~al~~L~~l~~ 365 (454)
++++.|+..+ +.|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999988665 67776654
No 132
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=2.4e-05 Score=56.51 Aligned_cols=87 Identities=32% Similarity=0.471 Sum_probs=70.3
Q ss_pred HHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhh
Q 012897 168 LPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246 (454)
Q Consensus 168 l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 246 (454)
+|.|++.+ +++++.++..++++|+.+. .. ..++.|..+++++++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 8889999999999999542 11 45888999999999999999999999874
Q ss_pred hccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 247 ITYGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
....++.|..++.++.+..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12467889999988746677999998875
No 133
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.045 Score=55.81 Aligned_cols=339 Identities=14% Similarity=0.128 Sum_probs=186.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
.+.+++.|..++-.|++-+.++.+..+....+.+ +...++++.-.+.+..-+.|+.+|+.++...--.-..+ .
T Consensus 347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~v-----i~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l--~ 419 (1133)
T KOG1943|consen 347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELADQV-----IGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL--E 419 (1133)
T ss_pred HHhccCCcchhhHHHHHHHHHHHccCcHHHHHHH-----HHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--H
Confidence 4678899999999999999999988643334444 44455655544435666789999999987321111111 1
Q ss_pred CChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 82 GAVPIFVKLLAS--------PSDDVREQAVWALGNVAGDSPRC-RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 82 g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
.++|.+++.|.- ....+|..|+.+++.+++..... -+.+. ......|+....-+.+...|+.|..++-..
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 356666665532 34679999999999887433221 11111 112223332222566778899999888877
Q ss_pred cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHH
Q 012897 153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRT 231 (454)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~ 231 (454)
.....+.. .+++. +...+--.-..+.++-..++.-....+.....+ +..++.. +.+=++.+|+.+.++
T Consensus 499 VGR~~n~p-----~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 499 VGRQGNFP-----HGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hccCCCCC-----Cchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHHHHHHHH
Confidence 65532221 11111 111111112223333333333222333333322 3333332 455578899999999
Q ss_pred HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH---HHHHHh---CC---ChHHHHHHh
Q 012897 232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ---IQAVID---AG---LVGPLVNLL 302 (454)
Q Consensus 232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~---~~---~i~~L~~ll 302 (454)
|.+++...+ .......++.++....+. +...|.....+.+.+....... ...+.+ .+ +++.+....
T Consensus 568 L~~Ls~~~p----k~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~ 642 (1133)
T KOG1943|consen 568 LHKLSLTEP----KYLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRY 642 (1133)
T ss_pred HHHHHHhhH----HhhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence 999886544 234457778888888888 8888877766666555321110 001111 12 233333322
Q ss_pred h-hc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 303 Q-NA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 303 ~-~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
- .+ ..-.+...+..+.++..... .....+...+.-..+.+.+..++ .++..+.+++..++..
T Consensus 643 ~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 643 FYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 2 22 24455666677777766433 33333333344445555554344 7888888888888653
No 134
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.016 Score=59.41 Aligned_cols=236 Identities=12% Similarity=0.045 Sum_probs=145.7
Q ss_pred HHHHhchhhhhhHHHHHHHHHHhhcCCCCCC--ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQP--PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 206 (454)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 206 (454)
+.....++.+..++..+..+|..++..++.. .......+...+..-+++.....+...+.||..+....+.....++.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3333435557889999999999999873221 22233455666677777778888899999998887665522222333
Q ss_pred hCcHHHHHHhcCCCCCcchhhHHHHHhHhhc--c-----CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVT--G-----DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~-----~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
..++.++-.+++.+...|..+..+|..++. . ++. ....++ .++..+...+-.. ...+......++..+.
T Consensus 738 -k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 738 -KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHIL 813 (1176)
T ss_pred -HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHHH
Confidence 334444444488888889998888888873 1 111 011111 2333333333333 3333333244444444
Q ss_pred cCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHH
Q 012897 280 AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359 (454)
Q Consensus 280 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~ 359 (454)
.........-.-.+++..+.-++.++.++++..|...+.-++..-+...... ....+++.+..++++...+++.++...
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3111111111113456667777888899999999999999988765444332 333478888888888889999999999
Q ss_pred HHHHHHhhhh
Q 012897 360 LENILKVGEA 369 (454)
Q Consensus 360 L~~l~~~~~~ 369 (454)
|..+++....
T Consensus 893 lekLirkfg~ 902 (1176)
T KOG1248|consen 893 LEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHhCH
Confidence 9999887553
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.83 E-value=8.9e-05 Score=67.76 Aligned_cols=303 Identities=17% Similarity=0.180 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-----CCchhhHHHHhCCCh
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS-----GTSENTKVVIDHGAV 84 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~g~i 84 (454)
..+|++|...|.-++... ....+.-..+...+...+.... |.++..+..++..+.. ..|+..+.-...|.+
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 467888888888877653 1122222334555666677778 9999999999888764 223333322222322
Q ss_pred HHHHH-------hhCCCCHHHHHHHHHHHHHhhCCC----hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897 85 PIFVK-------LLASPSDDVREQAVWALGNVAGDS----PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 85 ~~L~~-------lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 153 (454)
-.++- .-++..+..+...+..+.++.... +..+.. ....+..-..++++.-++..|..++..+.
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV 419 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV 419 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence 22111 112234566667777777775321 110100 11122222223444556777777777776
Q ss_pred CCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----ChH---HHHHHHHhCcHHHHHHhc---CCCCC
Q 012897 154 RGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG----TND---KIQAVIEAGVCPRLVELL---GHPSP 222 (454)
Q Consensus 154 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~~~i~~L~~ll---~~~~~ 222 (454)
-++ -.........+...+...+.+..-..+..+.|+++|++.. .+. ....+.. -.+..++..- ...+.
T Consensus 420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD 498 (728)
T ss_pred eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 665 2333344456666777777777778899999999998732 111 1121211 2233333332 22467
Q ss_pred cchhhHHHHHhHhhccCccc----hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH-HHhCCChHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA-VIDAGLVGP 297 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-l~~~~~i~~ 297 (454)
.|+.++.++|+|+...-+.. ...+++ +-+..+...--.+....||.++|.+++|+..+..--.+. -....+++.
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 89999999999998532211 111111 222222222222226789999999999999742210000 011335778
Q ss_pred HHHHhhh-cchhhHHHHHHHHHHhcCC
Q 012897 298 LVNLLQN-AEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 298 L~~ll~~-~~~~v~~~a~~aL~~l~~~ 323 (454)
|..++.+ .+.+||.+|+.+|..-...
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCCc
Confidence 8888766 5899999999999876654
No 136
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.82 E-value=0.0041 Score=59.46 Aligned_cols=229 Identities=15% Similarity=0.142 Sum_probs=143.9
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-----CChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-----DYPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
..+.++.+..+|+++|.|++-.. +...+.+.+.|..+.++..|+.. + .++..-..+.|.-++...+..+..++
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~ 118 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLI 118 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHH
Confidence 45678999999999999999886 55677788999999999999987 4 78889999999998887788887777
Q ss_pred hC-CChHHHHHhhCC---------C--------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch------
Q 012897 80 DH-GAVPIFVKLLAS---------P--------SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE------ 135 (454)
Q Consensus 80 ~~-g~i~~L~~lL~~---------~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~------ 135 (454)
+. +++..+...|.. . +......++.++.|+..+.+.... -.....++.++.++..
T Consensus 119 ~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~ 197 (446)
T PF10165_consen 119 EEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPP 197 (446)
T ss_pred HHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCC
Confidence 65 777777776521 1 345566788889998755443222 0112234445444422
Q ss_pred --hhhhhHHHHHHHHHHhhcCCCCC------------CChhhhhchHHHHHHhhc----CC----ChhHHHHHHHHHHHh
Q 012897 136 --RAKLSMLRNATWTLSNFCRGKPQ------------PPFDQVRPALPALAQLVH----SN----DEEVLTDACWALSYL 193 (454)
Q Consensus 136 --~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~l~~l~~ll~----~~----~~~v~~~a~~~L~~l 193 (454)
.+.......++.+|.++-..... .........+..++.+|+ .. ..+.....+.+|.++
T Consensus 198 ~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~ 277 (446)
T PF10165_consen 198 SSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRL 277 (446)
T ss_pred CCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHH
Confidence 12345677777777777221100 000111334455555553 21 235677788888888
Q ss_pred ccCChHHHHHHHHhCc-----------------HHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 194 SDGTNDKIQAVIEAGV-----------------CPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~-----------------i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
+...... +..++..+ -..|+.++.++.+.++..+...+..+|.
T Consensus 278 ~~~~~~~-Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 278 ARAAREV-RKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHhcHHH-HHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 8776443 44444433 3345555555555555555555555553
No 137
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.77 E-value=0.00029 Score=69.52 Aligned_cols=189 Identities=19% Similarity=0.141 Sum_probs=130.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 150 (454)
-..++.+|++ +++-..+..++.-+..+++.. |+.+. ..++|.+++... ......+..-..+|.
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence 3455555554 334444555555555444332 22322 235777777774 455667777788888
Q ss_pred hhcCCCCCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC---Ccchh
Q 012897 151 NFCRGKPQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS---PSVLI 226 (454)
Q Consensus 151 ~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~ 226 (454)
+...+-|... .......+|.|++.|.-+|..++..++.++.-+....+.....-+. .+++.++.+-.+++ ..+|.
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence 8887644322 2234678899999999999999999999998877655544333333 57777877776655 57899
Q ss_pred hHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 227 PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 227 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
.|+.||..+.+..|...-......++..|.+.|+++ ..-+|++|..+=.+.
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 999999999996665554556668899999999999 888999998765544
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00012 Score=66.97 Aligned_cols=275 Identities=20% Similarity=0.154 Sum_probs=150.2
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCC----CCcHHHHHHcCCHHHHH------Hh-hcCCCChhHHHHHHHHHHHhcCCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIER----SPPIEEVIQSGVVPRFV------EF-LMREDYPQLQFEAAWALTNIASGT 71 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~~l~~L~------~l-L~~~~~~~v~~~a~~~L~~l~~~~ 71 (454)
.++...+|.++..+++.+.++..+.. ++..+.-...+-+-.+. .. -.+.. +..+..++..+.++....
T Consensus 302 ~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 302 KCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEA 380 (728)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchh
Confidence 35667789999999999998864421 22222111122111111 11 11222 456667777777776522
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
.+....=.....+..+..+-++.+.-++..|++.++-+.-+.........-.+....++..+ .+..-..+..+.|++++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGN 459 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhh
Confidence 11110000011122222222345566777888888777655443333444444556666666 55567789999999999
Q ss_pred hcCCC----CCCChhhh--h-chHHHHHHhh---cCCChhHHHHHHHHHHHhccCChHH----HHHHHHhCcHHHHHHh-
Q 012897 152 FCRGK----PQPPFDQV--R-PALPALAQLV---HSNDEEVLTDACWALSYLSDGTNDK----IQAVIEAGVCPRLVEL- 216 (454)
Q Consensus 152 l~~~~----~~~~~~~~--~-~~l~~l~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~i~~L~~l- 216 (454)
++..- |....... . ..+..+...- .-.+.+|+.++.++|+|+..--+.. ...+.+ +-+..+...
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v 538 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTV 538 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccce
Confidence 97542 22222211 1 1222222211 1246789999999999987421111 011122 112222222
Q ss_pred cCCCCCcchhhHHHHHhHhhccCcc-chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 217 LGHPSPSVLIPALRTVGNIVTGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 217 l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
.......|+.++|.+++|+..+..- ....-+.....+.|..++.+..+.++|..|+.+|.--..
T Consensus 539 ~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 539 LTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred ecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2335678999999999999975432 122223335667788888776688999999999876654
No 139
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.067 Score=56.54 Aligned_cols=389 Identities=11% Similarity=0.023 Sum_probs=195.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+..|..+-..+|-.|+++|..+....+.-..+..+.. .+-.-+.++. ..||+.|+..++......++....++
T Consensus 822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~qyY-- 894 (1692)
T KOG1020|consen 822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSS-ASVREAALDLVGRFVLSIPELIFQYY-- 894 (1692)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccch-hHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence 4567777899999999999999877422222323333 3334445566 79999999999987765666554443
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--hhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
..+..-+.++...||..+++.+..+|...|.+... +....+++. .++...++..++.++..+...+...
T Consensus 895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 44555566788999999999999999887765333 333444443 3334458999999999998876222
Q ss_pred --ChhhhhchHHHHH-------HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcC---------
Q 012897 160 --PFDQVRPALPALA-------QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLG--------- 218 (454)
Q Consensus 160 --~~~~~~~~l~~l~-------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~--------- 218 (454)
.......-++..+ .+.....+.+..+.+..-.... .......+... ..+..+.+++.
T Consensus 966 ~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen 966 VNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence 1111111122111 1122223333333322211110 01111111111 12222222221
Q ss_pred ---CCCCcc-hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC----cchhHHHHHHHHHHHHhc---CCHHHHH
Q 012897 219 ---HPSPSV-LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS----HKKSIKKEACWTISNITA---GNRDQIQ 287 (454)
Q Consensus 219 ---~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~----~~~~v~~~a~~~L~nl~~---~~~~~~~ 287 (454)
.++..+ ..+.+.+|..++.-.+. ++....+..|.+.|.+. ...++-...+.++....- ..++..
T Consensus 1044 ~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesf- 1118 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESF- 1118 (1692)
T ss_pred hhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHH-
Confidence 112222 33455566666654442 22223444455555433 233344444444443332 111111
Q ss_pred HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC--CCHHHHHHHHH--cCCcHHHhhccCCC----CHHHHHHHHHH
Q 012897 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG--GTHEQIKYLVR--EGCIKPLCDLFVCP----DPRIVTVCLEG 359 (454)
Q Consensus 288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~--~~~i~~L~~~l~~~----~~~v~~~al~~ 359 (454)
+ ..+=..|+.++..........|.-+++.++.. .+........+ -+.++.+-.-..+. ........+.+
T Consensus 1119 --L-~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsift 1195 (1692)
T KOG1020|consen 1119 --L-ASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFT 1195 (1692)
T ss_pred --H-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHH
Confidence 1 11233445555444445555666666666552 12222222111 01222222221112 22344567777
Q ss_pred HHHHHHhhhhhhhccCCcccc-cHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 360 LENILKVGEAEKNMGTATADV-NQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 360 L~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
++-++++++..... ..|.. ..+.. ....+++..|..++.+.+.+++.+|..-+..++
T Consensus 1196 lG~l~Ryfdf~~~~--~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1196 LGLLSRYFDFPKPS--NDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred HHHHHHhccCCCcc--CCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777765543321 11111 11222 233566677777777777888888877766544
No 140
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.74 E-value=0.00022 Score=51.70 Aligned_cols=67 Identities=16% Similarity=0.354 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897 56 LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLS 122 (454)
Q Consensus 56 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 122 (454)
++...+++|++++..++...+.+.+.|+++.+++... ..+|-++++|++++.+++..+++.+..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567789999999999999999999999999999754 578999999999999999999988777655
No 141
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.72 E-value=4.9e-05 Score=49.12 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235 (454)
Q Consensus 180 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 235 (454)
+.++..++++|++++...+....... ..+++.|..+|.++++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999988777766544 48999999999999999999999999875
No 142
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.0041 Score=63.57 Aligned_cols=242 Identities=12% Similarity=0.101 Sum_probs=151.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 012897 44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCRDLV 120 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 120 (454)
+.....+.++..+|..+..+|..++.. +.......+ ..+.+.|..-+++.....+...+.+|..|....+ .....+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344444443389999999999999984 333322222 1344555556666667778888888888775444 222222
Q ss_pred HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc--CCC----CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFC--RGK----PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
. . .++-++-.+ ++.+...++.+..+|..++ ... ..+.......+++.+...+-.+...+....+.++..+.
T Consensus 737 ~-k-~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 P-K-LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred H-H-HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 2 2 233333333 6677888888888888887 221 22224455667777766655554444444355555555
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
.........-.-.+++..+..+|.+++++++..|+..+..++...+...-......+++.++.+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222235677777888999999999999999999987765433333335788888888877 88888888888
Q ss_pred HHHHhc-CCHHHHHHHH
Q 012897 275 ISNITA-GNRDQIQAVI 290 (454)
Q Consensus 275 L~nl~~-~~~~~~~~l~ 290 (454)
+-.++. ...+.++.++
T Consensus 893 lekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFL 909 (1176)
T ss_pred HHHHHHHhCHHHHHhhC
Confidence 888876 3344444444
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.68 E-value=0.0048 Score=58.78 Aligned_cols=300 Identities=16% Similarity=0.119 Sum_probs=165.8
Q ss_pred CHHHHHHHHHHHHHHhccCCCC----cHHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSP----PIEEVIQSGVVPRFVEFLMRED------YPQLQFEAAWALTNIASGTS-ENTKV 77 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~----~~~~~~~~~~l~~L~~lL~~~~------~~~v~~~a~~~L~~l~~~~~-~~~~~ 77 (454)
+.+.-...+..|..++...... ......+..+++.+.++..... ++.+...+..++..+...-+ +....
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556667777777776554222 2333444457887777664331 13455555555555555222 22222
Q ss_pred HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHHHH-hhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHH
Q 012897 78 VIDHGAVPIFVKLLA----------SPS--DDVREQAVWALGN-VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRN 144 (454)
Q Consensus 78 ~~~~g~i~~L~~lL~----------~~~--~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 144 (454)
+ +..+..++. ..+ .......+..+.. ++.-++...-. .....+..++.+.....++..+..
T Consensus 136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~ 209 (415)
T PF12460_consen 136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA 209 (415)
T ss_pred H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence 2 233333222 111 1112222222222 22222222111 111246667777656667888888
Q ss_pred HHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH----HHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897 145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL----SYLSDGTNDKIQAVIEAGVCPRLVELLGH 219 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 219 (454)
++.+++.+.-.-+... ....++..+..-+ ...++..+..++..+ ..+.-....... ..+..++.++.+
T Consensus 210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~ 282 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence 8888888875422222 3345555555444 333333344444443 333322222222 345667788876
Q ss_pred CCCcchhhHHHHHhHhhccCcc--------chhhhhcc----CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897 220 PSPSVLIPALRTVGNIVTGDDF--------QTQCIITY----GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287 (454)
Q Consensus 220 ~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~----~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 287 (454)
+++...+.+.++-+....+. ..+.+.+. .++|.+++..+.. +...|.....+|+++..+.|..+-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence 66788888888888876332 12222222 3466677777766 556888889999999986554332
Q ss_pred HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 324 (454)
.---..++|.|++.+..++.+++..++.+|..+....
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 1112458999999999999999999999999998865
No 144
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0061 Score=51.84 Aligned_cols=256 Identities=17% Similarity=0.199 Sum_probs=154.1
Q ss_pred HHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 41 VPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 41 l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
+..+.+.|.+.+ ...-+..|+..|.++... +.+..+.+...+.+...+...+.+|+......
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~------ 67 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDED------ 67 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccch------
Confidence 344555555533 123355666666666551 22566666666666677777778888775322
Q ss_pred HHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 120 VLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
.++.++..+.. +..+-++..|..+|..+.. ...++.+-+..+++-..++..+..++..+-..+.
T Consensus 68 -----Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 68 -----AVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred -----hhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 36677777643 3456677788888888772 2556677777766677777777777766543211
Q ss_pred HHHH----HH--H------HhCcHHHHHHhcCCCC-C-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcc
Q 012897 199 DKIQ----AV--I------EAGVCPRLVELLGHPS-P-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK 264 (454)
Q Consensus 199 ~~~~----~~--~------~~~~i~~L~~ll~~~~-~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~ 264 (454)
.... .. . ..+-+..+-..+.+.. + --|..|+..|.|+.. ...+..+.+-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccc-h
Confidence 0000 00 0 0011222222222211 1 113344444444321 12355677778888 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHh
Q 012897 265 KSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLC 342 (454)
Q Consensus 265 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~ 342 (454)
.-.|.+++++++.+-+. -.++.|.+.|.. +++-||..|+.||+.++.. + +++.|.
T Consensus 201 alfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHH
Confidence 88999999999988542 257778887765 4889999999999999751 2 467777
Q ss_pred hccCCCCHHHHHHHHHHHHHH
Q 012897 343 DLFVCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 343 ~~l~~~~~~v~~~al~~L~~l 363 (454)
+.+.++.+-|++.|.-+|.-.
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 888888888887776666544
No 145
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.64 E-value=0.0058 Score=60.65 Aligned_cols=244 Identities=16% Similarity=0.096 Sum_probs=156.3
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897 43 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVL 121 (454)
Q Consensus 43 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 121 (454)
.+...+..+..|.+...+.+++...+........ +.. -++...+..+. +..+.++..++++++..|+... . ...
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l-~~~- 527 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-L-LSL- 527 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-c-ccc-
Confidence 3334444444477777888888877763222211 111 13344444443 3557778888888888773221 1 110
Q ss_pred hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc--CCChhHHHHHHHHHHHhccCChH
Q 012897 122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH--SNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
.-+++..|.++. ...+.++......+|+..+..++.........+.|..+.++. ++||.+...+-.++..++....
T Consensus 528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~- 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA- 605 (1005)
T ss_pred chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-
Confidence 112455666666 666788999999999999998877767777778887777653 5678777777777776664321
Q ss_pred HHHHHHHhCcHHHHHHhcCCCC----CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 200 KIQAVIEAGVCPRLVELLGHPS----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 200 ~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
+...+. ...+|.+++.+..+. .....-++..|..+.++.+.-....+-.-..+.+.++.-+..+..+-..+..+|
T Consensus 606 ~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 606 NYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 112222 367899999998765 556677888888888876544333333456777777776554888899999999
Q ss_pred HHHhcCCHHHHHHHHhCCC
Q 012897 276 SNITAGNRDQIQAVIDAGL 294 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~ 294 (454)
+.+...+.++....-..+.
T Consensus 685 ra~Is~~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 685 RALISVTLEQLLTWHDEPG 703 (1005)
T ss_pred HHHHhcCHHHHHhhccCCC
Confidence 9988866666555544333
No 146
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.61 E-value=0.0019 Score=53.56 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897 179 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258 (454)
Q Consensus 179 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 258 (454)
++.+|.+++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..|....-- -++..++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHH
Confidence 578999999999999977665444 6688999999999999999999999999864321 1223344778888
Q ss_pred hcCCcchhHHHHHHHHHHHHhcC
Q 012897 259 LTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 259 L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
+.++ ++.+|..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999875
No 147
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.54 E-value=0.0033 Score=57.16 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=144.6
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-----HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
.+...+.+..|+..|..-+.+.|..+..++.++.......+ +.+.. ..-..+..++....++++.-.+...|+.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 44556889999999999999999999999999886543332 23322 1133334444344567777777788888
Q ss_pred hcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhH
Q 012897 152 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPA 228 (454)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a 228 (454)
.+++............+..+......++-++...|..++..+-..+......++.. .++.....++.+++.-++..+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 87775444444456677778888999999999999999999877666665666654 356778888999999999999
Q ss_pred HHHHhHhhccCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 229 LRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 229 ~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+..|+.+....... .+.+-+..-+..++.+|++. +..++.+|..++.-+..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 99999998644322 23344556789999999999 99999999999988776
No 148
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.0039 Score=63.64 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=116.7
Q ss_pred hhhchHHHHHHhhc----CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhc
Q 012897 163 QVRPALPALAQLVH----SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 163 ~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~ 237 (454)
....+.|.++...+ ..+|+++.+|.-+|+.++.-+...+. .-++.|+..+. ++++.+|.+++-+++-++.
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 44667888888885 45899999999999998865544333 45788888886 7899999999999999987
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 317 (454)
..+...+ ..-+.|...|.+. ++.+|+.|..+|++|....- +--.|.++.+..++.+++.+++.-|-..+
T Consensus 991 ~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 991 RFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred hcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6664433 4567899999999 99999999999999986422 22378999999999999999999888777
Q ss_pred HHhcCCC
Q 012897 318 SNATSGG 324 (454)
Q Consensus 318 ~~l~~~~ 324 (454)
..+...+
T Consensus 1060 ~Els~k~ 1066 (1251)
T KOG0414|consen 1060 KELSSKG 1066 (1251)
T ss_pred HHhhhcc
Confidence 7776654
No 149
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0045 Score=60.12 Aligned_cols=219 Identities=13% Similarity=0.094 Sum_probs=119.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 163 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (454)
+..+..+|.+.++.++..|..+|.+++.+....+.. ...+++++.+.++..+.--.+.-|..+.. .....
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~i 314 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKI 314 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHH
Confidence 444555555555555555555555554332211111 23344444333333333333333333331 12223
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
..+.+--++.+|.++|-+++..++.....++.... ..+..+++..+...--. =.+.+...|..-++++..++...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 35566667788889999999999998888875432 22222222111111000 01123456778888888888766654
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhc
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNAT 321 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 321 (454)
.. .+++.+++.+.+. ++..-......+.......|..+ ..++..|++-+.. ...++...|+|.++..+
T Consensus 394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr-----~~ii~~l~~~~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLR-----ASIIEKLLETFPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHH-----HHHHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence 44 5678899999888 76555555555555555444433 3345556655543 46677788888888777
Q ss_pred CCC
Q 012897 322 SGG 324 (454)
Q Consensus 322 ~~~ 324 (454)
...
T Consensus 463 e~~ 465 (948)
T KOG1058|consen 463 EGL 465 (948)
T ss_pred hhh
Confidence 653
No 150
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.51 E-value=0.0039 Score=51.63 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
++.+|.+++.+++-++...+...+ ..++.+...|.++ ++.||+.|+.+|..|.....-.. +..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 357899999999999976553333 6788999999999 99999999999999986422111 1233477888
Q ss_pred HhhhcchhhHHHHHHHHHHhcCC
Q 012897 301 LLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 301 ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999886
No 151
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.48 E-value=0.00028 Score=51.29 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 012897 142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 221 (454)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 221 (454)
+..++.+|...+..-+.........+++.++..+.+++..||.+|+.+|.+++.......-..+ ..++..|..++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence 4455666666665544445556688999999999999999999999999999976543322222 378888999999999
Q ss_pred CcchhhHH
Q 012897 222 PSVLIPAL 229 (454)
Q Consensus 222 ~~v~~~a~ 229 (454)
+.|+..|.
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99888773
No 152
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.022 Score=55.27 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897 141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220 (454)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 220 (454)
+...+...+..+-..+ .......+.+..+++...+++..||..+|..|..+.......-+.+++ ++...+...+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence 3444444444443332 223356778888888888999999999999999988744333233333 7778888888999
Q ss_pred CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
.+.||.+|+.+|+.+-...... +..+...+..+++.+++++||+.|+..+.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 9999999999999987322111 12456788888887779999998866554
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.44 E-value=0.00044 Score=41.38 Aligned_cols=39 Identities=38% Similarity=0.760 Sum_probs=35.6
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897 72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110 (454)
Q Consensus 72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 110 (454)
++.+..+.+.|+++.|+.++.++++.++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999986
No 154
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.39 E-value=0.0081 Score=47.51 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHhCcHHHHHHhcCCCCC------cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCc-chhHHHHHHHH
Q 012897 202 QAVIEAGVCPRLVELLGHPSP------SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWT 274 (454)
Q Consensus 202 ~~~~~~~~i~~L~~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~ 274 (454)
..+++.+++..|+.++.++.. .+...++.++..|..+.. .....++..++..+........ +..+...+...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 557778999999999977552 566678888888887543 3344666678888888887653 57889999999
Q ss_pred HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHH
Q 012897 275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYL 332 (454)
Q Consensus 275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 332 (454)
|-++...++.....+.+.-.++.|+..++..+++++.++...+..+...+++..++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999988777666666666799999999999999999999999999888776665543
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.39 E-value=0.024 Score=54.69 Aligned_cols=297 Identities=12% Similarity=0.091 Sum_probs=146.8
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897 42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 121 (454)
Q Consensus 42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 121 (454)
..++...+ ++ +..+..|+..+.......|+..+. ++..++.+..+.+..||..|++.|..+|.++++....+
T Consensus 26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 34555555 45 789999999999999988887766 47899999999999999999999999999887765554
Q ss_pred hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHHhcc-CC
Q 012897 122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSD-GT 197 (454)
Q Consensus 122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~a~~~L~~l~~-~~ 197 (454)
...|+++| ...++.-...+-.+|..+...++ .+.+..++..+. +.++.+++.++..|..-.. -.
T Consensus 98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 56788888 45555545555555555554321 345555555554 5788899999988854321 11
Q ss_pred hHHHH--HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc----CccchhhhhccCChHHHHHhhc-----CCcchh
Q 012897 198 NDKIQ--AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG----DDFQTQCIITYGALPYLLGLLT-----HSHKKS 266 (454)
Q Consensus 198 ~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~L~-----~~~~~~ 266 (454)
.+... .-.+.-++..+...|.+-..+--...+.+|..+-.. .....+. +++.+..... ...+++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~sD~e 240 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPSDPE 240 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SSSHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCcCHH
Confidence 11111 112223344555566542221122233334333321 1111111 2233332221 111333
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 012897 267 IKKEACWTISN----ITA--GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 340 (454)
Q Consensus 267 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 340 (454)
.-.....++.. ++. .+.....++.+ .++|.+-.+ ..+.+...+.++..++..........++ ..+...
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L-~~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLL-PSIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHH-HHHHHH
Confidence 33333333332 122 23344434443 466655554 4566777888888888765432222222 112233
Q ss_pred HhhccCC--CCH----HHHHHHHHHHHHHHHhhhh
Q 012897 341 LCDLFVC--PDP----RIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 341 L~~~l~~--~~~----~v~~~al~~L~~l~~~~~~ 369 (454)
|...+-. ..+ ..++..+.++.++.+..++
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 3333322 223 3566777777777766554
No 156
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.017 Score=49.30 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=138.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
+..+.+...+.+ ...+...+.+|+.... ...++.|+..+.. ..+-+|..|..+|+.+. .+.
T Consensus 38 i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~--- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE--- 100 (289)
T ss_pred HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---
Confidence 555666666555 5677777778777765 3568888888875 55888999999999985 222
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC-------------hhhhhchHHHHH-HhhcCCChhH-H
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-------------FDQVRPALPALA-QLVHSNDEEV-L 183 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-------------~~~~~~~l~~l~-~ll~~~~~~v-~ 183 (454)
..+.+-++. +++..++++.+..++..+-....... ......-+..+- .+++.+.+.. +
T Consensus 101 ------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~R 173 (289)
T KOG0567|consen 101 ------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFER 173 (289)
T ss_pred ------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHH
Confidence 234444444 56666666666666666543221000 001112233333 3333333333 4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-C
Q 012897 184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-S 262 (454)
Q Consensus 184 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~ 262 (454)
+.+...|.|+.. .+ .+..+..-+..++.-.|..+..+++++-.. -.++.|.+.|.. .
T Consensus 174 y~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~ 231 (289)
T KOG0567|consen 174 YRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDET 231 (289)
T ss_pred HhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhh
Confidence 556666666432 12 234455556667777899999999988642 235666666643 3
Q ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 263 HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 263 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
+++.||..|+.+|+.++. ++ .++.|.+.+.++++-|++.+..+|.-+-
T Consensus 232 E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 378999999999998864 33 3556777888888888888888876553
No 157
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.33 E-value=0.00065 Score=40.62 Aligned_cols=38 Identities=50% Similarity=0.733 Sum_probs=34.4
Q ss_pred HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 284 DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 284 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
+....+.+.|+++.|++++.+++++++..++|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35667788999999999999889999999999999986
No 158
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.30 E-value=0.035 Score=50.35 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=112.4
Q ss_pred CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CChhh
Q 012897 39 GVVPRFV-EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSPRC 116 (454)
Q Consensus 39 ~~l~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~ 116 (454)
++++.|+ ..+++.+ +.+|+.|+.+|+-.+--+.+.... .++.+...++..++.++..|+.++..+.. +....
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3455554 6778888 899999999999999855543333 36778888877899999999999998762 22211
Q ss_pred HHHH-------HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-c---CCChhHHHH
Q 012897 117 RDLV-------LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-H---SNDEEVLTD 185 (454)
Q Consensus 117 ~~~~-------~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~---~~~~~v~~~ 185 (454)
-... .....+..+.+.+ .+.+++++..++..++.|........ ...++..|+-+. . .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1123455666666 55588899999999999987753333 233344333332 2 235677777
Q ss_pred HHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897 186 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220 (454)
Q Consensus 186 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 220 (454)
...++-..+..++.+.. .+...+++.+..+...+
T Consensus 176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 77777777877776644 44446777777766543
No 159
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.29 E-value=0.0013 Score=47.84 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=56.7
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
++...+.+|+|++..++.....+.+.++++.+++... ++.+|.+|+.|.+++.|++.+++++...+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4667889999999999888888999999999998874 233889999999999999999888775554
No 160
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.24 E-value=0.024 Score=47.73 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHH
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 88 (454)
..|+..|.-++++ ++....+.+..+--.+-.+|... ..+-+|..++.+++.+.. ++.+....+...+++|..+
T Consensus 97 cnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 97 CNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4556555556666 67777787776555555555433 236789999999999998 5567778888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHH------HHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 89 KLLASPSDDVREQAVWALGNVAGDSPRCRDL------VLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~------~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
+.++.+++.-+..|+.++..+..++...... +.. ...+..++..+.+.++..+.+.++.+..+|+.++
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999988666433221 111 1134445555556778888888999888888763
No 161
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.18 E-value=0.0033 Score=62.47 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=129.8
Q ss_pred hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC---------C----ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHH
Q 012897 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ---------P----PFDQVRPALPALAQLVHSNDEEVLTDACWALSY 192 (454)
Q Consensus 126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~---------~----~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~ 192 (454)
...++.++. ++++-..+..++.-+..+.+. . +......++|.+++.+.+.....+..-+.+|.+
T Consensus 817 a~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 344555552 345555566666666555421 1 122346788999999887777778888888888
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcc--hhHHHH
Q 012897 193 LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHK--KSIKKE 270 (454)
Q Consensus 193 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~--~~v~~~ 270 (454)
+..+-+...-.---..++|.|++.|.-++..+|..++.++..+....+.....-+ .-+++.++.+-++..+ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence 8876654221111236788899999999999999999999998876553332222 2466777777666622 579999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
|..+|..+...-|...-......++..|...+.++..-||++|..+=.+..
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 999999999833332223334568888999999988899999988755543
No 162
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.18 E-value=0.086 Score=48.09 Aligned_cols=201 Identities=10% Similarity=0.092 Sum_probs=142.5
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH-----HHHHHHh--CcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
.+.+..|+..|..-+-+.+..+.....++.+..... .+.+.+. .++..|+..- +++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 578888888898889999999999998887653222 2223321 2333333333 456677777777777776
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC---CChHHHHHHhhhcchhhHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAA 314 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~ 314 (454)
. +...+.++....+..+.+....+ +-++-..|..++..+....+.....++.. .++.....++.+++.-+|.+++
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 4 44566778888888899999999 99999999999999877667666666643 3567788889999999999999
Q ss_pred HHHHHhcCCCCHH--HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 315 WAISNATSGGTHE--QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 315 ~aL~~l~~~~~~~--~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
..|+.+....... ...++.+..-+..++.+|.++...++..|...+.-++....+
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999998743221 134544566789999999999999999999888888765443
No 163
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.095 Score=48.93 Aligned_cols=269 Identities=14% Similarity=0.124 Sum_probs=142.0
Q ss_pred CCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 81 HGAVPIFVKLL----ASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 81 ~g~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.|.+..++..+ .+++..+|..|++.|++.++..|. .+... ...+..++.-|.++.+.+|+-.++.+|..+...
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 34444444433 457889999999999999987442 22221 224566666665677789999999998888765
Q ss_pred CCCCChh-hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhHHHH
Q 012897 156 KPQPPFD-QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPALRT 231 (454)
Q Consensus 156 ~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~ 231 (454)
....... ..-.+.-.+..+..+.+++.+.++...++.++.-.....+.+... +-...++-.++++++.+.. ||+.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~ 409 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRS 409 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHH
Confidence 4222222 223344456678889999999999988888764322222222221 2223344445666665544 4555
Q ss_pred HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHH-HHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhH
Q 012897 232 VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK-EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIK 310 (454)
Q Consensus 232 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 310 (454)
....+..+- ..+... +. +-+.++.. .+..+. ..-|+ ..+....++....+.. ...-++++.-+.++
T Consensus 410 ~~~~c~p~l-~rke~~--~~---~q~~ld~~-~~~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr 476 (533)
T KOG2032|consen 410 ELRTCYPNL-VRKELY--HL---FQESLDTD-MARFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQVR 476 (533)
T ss_pred HHHhcCchh-HHHHHH--HH---HhhhhHHh-HHHHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHHHH
Confidence 544443221 111100 11 11112111 111111 11121 1222223333322221 12222333334555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 311 KEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
..+...-.+....-.++.+.+.-...+...+..+...+-|+++..+..++..+..
T Consensus 477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555554555444344444443333455667777788889999999999887764
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.15 E-value=0.011 Score=46.82 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=99.4
Q ss_pred hHHHHHhcCChHHHHHHhchhhh-----hhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHH
Q 012897 116 CRDLVLSQGALIPLLAQLNERAK-----LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACW 188 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~ 188 (454)
+...+...+++..|++++.++.. .++...++.++..|..+...........++..++..+... +..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788899999999965442 5788889999999988753344444567888888888654 6889999999
Q ss_pred HHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 189 ALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 189 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
.|-+++.+++.....+.+.=-++.|+..|+.++++++..++..+-.+....++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988876666666566899999999999999999988887777655433
No 165
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.056 Score=50.36 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=99.6
Q ss_pred HHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh-hhcchhhHHHHHHHHHHhcCCCCHHH-HHH
Q 012897 254 YLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWAISNATSGGTHEQ-IKY 331 (454)
Q Consensus 254 ~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~ 331 (454)
.+..-..++ +..+|..|+..|+|.+.+.|+.+...... .+..++.-| +..+.+|..++..+|..+........ ..+
T Consensus 262 ~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~ 339 (533)
T KOG2032|consen 262 SLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY 339 (533)
T ss_pred HHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence 333344566 77899999999999999866655554432 344444444 44578999999999988876433222 222
Q ss_pred HHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 012897 332 LVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411 (454)
Q Consensus 332 l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 411 (454)
+. ++.-.+..++++.+++++..+...+..+.+......+.. |.+.+. +...++.--++++++.+...+
T Consensus 340 ~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~--------Fte~v~--k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 340 LL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF--------FTEQVK--KRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred ch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh--------hHHHHH--hccccceeeeCCCChHHHHHH
Confidence 22 245567788999999999999999999988766543221 344332 222333333677888887777
Q ss_pred HHHHHHhcC
Q 012897 412 VKILETYWL 420 (454)
Q Consensus 412 ~~~l~~~~~ 420 (454)
...+..+.+
T Consensus 408 r~~~~~c~p 416 (533)
T KOG2032|consen 408 RSELRTCYP 416 (533)
T ss_pred HHHHHhcCc
Confidence 766665544
No 166
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.14 E-value=0.0078 Score=51.58 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHH--HcCCHHHHHHh-------hcCCC-Ch---hHHHHHHHHHHHhcCCCchhh
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEF-------LMRED-YP---QLQFEAAWALTNIASGTSENT 75 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~l~~L~~l-------L~~~~-~~---~v~~~a~~~L~~l~~~~~~~~ 75 (454)
+++.|..|+..|.+-... .+...-+. .-|.+..|++= +..+. .+ .-...|+..|-.++. .++.+
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 678899998888876544 33333333 34666666542 23221 01 223344555556666 89999
Q ss_pred HHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897 76 KVVIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 149 (454)
Q Consensus 76 ~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 149 (454)
..+++..+.-.|..+|+.. -+.+|-.++.+++.+.. ++++.-..+...++++..++.+ +..++-.+..|..++
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence 9999999888888888652 36788999999999984 5566777888889999999999 556677777788888
Q ss_pred HhhcCCCCC--------CChhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChH
Q 012897 150 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 150 ~~l~~~~~~--------~~~~~~~~~l~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
..+..++.. ..+.....++..++ .+...+++.+..++++|...++.+...
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 877766411 12222344444443 445677899999999999999977543
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.017 Score=56.83 Aligned_cols=239 Identities=14% Similarity=0.089 Sum_probs=152.8
Q ss_pred hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh-hcCCCCCCChhhhhchHHHHHHhhcCCC-hhHHHHHHHHHHHh
Q 012897 116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN-FCRGKPQPPFDQVRPALPALAQLVHSND-EEVLTDACWALSYL 193 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~a~~~L~~l 193 (454)
.+...+..|+...|+++. ....+..+.....+|.. +.. ........++.+.+.++... ..-...++.++.|+
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f-----~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnL 569 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF-----PGERSYEVVKPLDSALHNDEKGLENFEALEALTNL 569 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC-----CCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcc
Confidence 344566677888888888 44455666666777762 111 11112344555555554332 22356788889999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc-cCChHHHHHhhcCCcchhHHHHHH
Q 012897 194 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEAC 272 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~ 272 (454)
+..+....+.+.+...++.+-.++..+++..+.+++..+.||.-++.-..+.+.+ ...++.....+... .......++
T Consensus 570 as~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 570 ASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred cCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 8777666666888778888888888899999999999999999876655555665 34556666666665 777777777
Q ss_pred HHHHHHhcCCHHHHHH-HHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHH
Q 012897 273 WTISNITAGNRDQIQA-VIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR 351 (454)
Q Consensus 273 ~~L~nl~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~ 351 (454)
.++..++.-...++.. .--......+..++.++++.++...+..+.|+.. ...+....+.....++.+...-.-....
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 7777565533333332 2234677888999999999999999999999544 3445555555555555554443333333
Q ss_pred HHHHHHHHHHH
Q 012897 352 IVTVCLEGLEN 362 (454)
Q Consensus 352 v~~~al~~L~~ 362 (454)
.+..+-.+|..
T Consensus 728 ~~~~~~~~l~~ 738 (748)
T KOG4151|consen 728 KREDAAPCLSA 738 (748)
T ss_pred hhhhhhhHHHH
Confidence 33333333333
No 168
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.12 E-value=0.018 Score=52.15 Aligned_cols=185 Identities=21% Similarity=0.237 Sum_probs=117.5
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC--CchhhHHHH
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG--TSENTKVVI 79 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~ 79 (454)
.+.......|..|+..+.+++... ...+.+. ...++..+.+.++.+. .+-+..|+.++.-++-. .......++
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 445566889999999999998774 2233322 2346778888898888 56677777777777653 223344444
Q ss_pred hCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHH--HHhch---------hhhhhHHH
Q 012897 80 DHGAVPIFVKLLASP--SDDVREQAVWALGNVA---GDSPRCRDLVLSQGALIPLL--AQLNE---------RAKLSMLR 143 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~i~~l~--~~l~~---------~~~~~~~~ 143 (454)
+ ...|.|...+.+. .+.+|..++.+|+-++ ...+......++ .+..+. ..... .+++.+..
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 4 4678888888763 4667777777777655 222222221111 122111 11211 12356788
Q ss_pred HHHHHHHhhcCCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 144 NATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 144 ~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
.|+.+.+-|...-+.... ......+|.+..+|.+++.+||..|..+|.-+.
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888777777755443222 334678999999999999999999999987664
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.02 Score=56.38 Aligned_cols=242 Identities=13% Similarity=0.057 Sum_probs=156.5
Q ss_pred CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897 71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALG-NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 149 (454)
Q Consensus 71 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 149 (454)
...-+...++.|+...|+.+...+.+..+.....+|. .+...... ....++.+...+..+....-...++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 5566667788899999999998888888888777777 33221111 1123555555554444333445678889
Q ss_pred HhhcCCCCCCChhh-hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCCCCCcchhh
Q 012897 150 SNFCRGKPQPPFDQ-VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGHPSPSVLIP 227 (454)
Q Consensus 150 ~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~ 227 (454)
.||+..+....... ....++.+-.++..+++..+..++..+.|+.....-....+.+. ...+.....+.........+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 99887764333333 34455666777888899999999999999997765555555552 33444444444455556666
Q ss_pred HHHHHhHhhccCccchh-hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcc
Q 012897 228 ALRTVGNIVTGDDFQTQ-CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE 306 (454)
Q Consensus 228 a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 306 (454)
++.++..++......+. ..--..+...+..++.+. +..++......+.|+.....+....+.....++.+..+-....
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66666655544443333 222346777888888888 9999999999999976665666666666666776666555444
Q ss_pred hhhHHHHHHHHHH
Q 012897 307 FDIKKEAAWAISN 319 (454)
Q Consensus 307 ~~v~~~a~~aL~~ 319 (454)
...++.+..+|..
T Consensus 726 a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 726 APKREDAAPCLSA 738 (748)
T ss_pred hhhhhhhhhHHHH
Confidence 4455555555443
No 170
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.029 Score=53.06 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=94.1
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897 170 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT 248 (454)
Q Consensus 170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 248 (454)
.+-+++.+.++-+|.....+++---.... +.+++..+++. .++.+.++|.+|.-+|+-+|....
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 56677777788777777666543211111 12567778887 678899999999999999886443
Q ss_pred cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 249 YGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 249 ~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
..+...+++|....++.||...+.+|+-.|.++.... .+..|-.++.+.+.-||+.|+.+++-+....++
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 3455667777655588999999999998888654432 244455666677788888888888887765544
No 171
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.088 Score=51.56 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=91.7
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 289 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 289 (454)
=+.+-.++.+.++-+|...+.+++.--.+.. +++.+..|+..--++.+.+||+.|+.+|+-++...++.
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---- 589 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---- 589 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh----
Confidence 3445566777888888887766643322221 22556677777444449999999999999998876663
Q ss_pred HhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 290 IDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 290 ~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
.+..+.+|... ++.||.-++.+|+-.+.+..... ++..|-.+.+++..-||+.|+-++.-++..
T Consensus 590 -----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 590 -----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred -----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 44566666654 99999999999998877643322 344455566666677999988888777653
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.01 Score=58.69 Aligned_cols=224 Identities=12% Similarity=0.075 Sum_probs=142.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897 42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 121 (454)
Q Consensus 42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 121 (454)
+.-+..+.++. +.++-.+++.|..+... .+....+...+++...+..|++.++-+--+|+..+..+|..-|
T Consensus 730 qeai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence 33445556666 78899999999999983 3566666778999999999999999999999998888885433
Q ss_pred hcCChHHHHHHhchhh---hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 122 SQGALIPLLAQLNERA---KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 122 ~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
..+++.+.+...... .++.+-..-.++.++..........+....+...++..++++...|..++..++++|....
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 234666666432211 1234444446666666554333344445667777788888888889999999999986544
Q ss_pred HHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccchhhhhc---cCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 199 DKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIIT---YGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
......+. .++..++.+.+ ++.+.+|++|+..+..+..+.....-.+.. ......+........+..++..|+.+
T Consensus 880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 33232222 34455555553 467789999999999988765532222221 12222333333333245555555555
Q ss_pred HH
Q 012897 275 IS 276 (454)
Q Consensus 275 L~ 276 (454)
+-
T Consensus 959 le 960 (982)
T KOG4653|consen 959 LE 960 (982)
T ss_pred HH
Confidence 44
No 173
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.017 Score=57.19 Aligned_cols=189 Identities=13% Similarity=0.146 Sum_probs=129.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
+.-+..+.++.+.++..++..+..+.... .....+...+++...+..+ .+.|+-+.-+|...+..||.-. .
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~ 800 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P 800 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence 33444555677888999999999998654 3345566677888888888 7788888888998888888652 2
Q ss_pred hchHHHHHHhh-cCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 165 RPALPALAQLV-HSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 165 ~~~l~~l~~ll-~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
..++|.+...- ... .++.+..+..++.+++..-.+....... -++..++..+++++...|..++..++++|....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 45677776633 222 2344555557777776544433333333 567778888888888889999999999997544
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~ 284 (454)
......+ ..+...++.+...+.+..+|+.|+..+..+..+...
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 2222211 134556666666665888999999999999876443
No 174
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.99 E-value=0.033 Score=50.48 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=114.9
Q ss_pred HHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh--hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC--ChHHHHHH
Q 012897 129 LLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPALAQLVHSNDEEVLTDACWALSYLSDG--TNDKIQAV 204 (454)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~ 204 (454)
.+..+ .+.....|..++..+..+.......... ....++..+.+.++.+..+-+..|+.++.-++-. .......+
T Consensus 48 ~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 33344 4455778888888888887665332222 2245677888888888776667777777766644 22233445
Q ss_pred HHhCcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhc-cCChHH--HHHhhcCC---------cchhHHHH
Q 012897 205 IEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPY--LLGLLTHS---------HKKSIKKE 270 (454)
Q Consensus 205 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~--L~~~L~~~---------~~~~v~~~ 270 (454)
++ .+.+.|.+.+.+.. ..+|..++.+|+.++.........+.. ...+.. .....+.. .++.+...
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 55 67888888887754 345667777777776532211111110 012231 11222211 13457777
Q ss_pred HHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 271 ACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 271 a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
|+.+-+-+... ........+ ...++.|..+|.+.+.+||..|..+|.-+..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 76555555543 232333333 3468999999999999999999999987755
No 175
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.98 E-value=0.39 Score=46.54 Aligned_cols=253 Identities=13% Similarity=0.073 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
.++.|..+...+..++.... .... ..+ ..+.+.+..+..++.-..-+.+|..|+.+..+. ..++.++.+.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~-~~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQD-SSSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHccc-cccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence 35678888888888776642 1111 111 123333344332444455566677777644343 224567777777
Q ss_pred HhhCC---------------------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhH
Q 012897 89 KLLAS---------------------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM 141 (454)
Q Consensus 89 ~lL~~---------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 141 (454)
..+.. .+.......+..+.++...+...-..-.-.+.+..++.+.....++..
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 76631 122333445566666665443322222222345566666555556666
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-
Q 012897 142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP- 220 (454)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~- 220 (454)
...++.++-.+..+. .........++..|....... +....+-.++.|++...... ..+..|..+|.++
T Consensus 194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence 677777777776654 223334455566666554333 56666777888888654322 3456677777322
Q ss_pred -----CCcchhhHHHHHhHhhccCccchhhhh-ccC--ChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 221 -----SPSVLIPALRTVGNIVTGDDFQTQCII-TYG--ALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 221 -----~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+..+..-|+..+..+..+.......-+ -.- +++.+...++.. ++.+-.+....+.++..
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 234556788888888876632222122 222 778888888877 77777777777777773
No 176
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.95 E-value=0.72 Score=49.35 Aligned_cols=382 Identities=13% Similarity=0.070 Sum_probs=188.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
+.+....||..|+..+....-.. ++...+. -..+..-+.+.. ..||..++.+++.+|...|..... +
T Consensus 864 ~~DssasVREAaldLvGrfvl~~-~e~~~qy-----Y~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf~~i------~ 930 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVLSI-PELIFQY-----YDQIIERILDTG-VSVRKRVIKILRDICEETPDFSKI------V 930 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhhcc-HHHHHHH-----HHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCChhhH------H
Confidence 45566788888888888765543 3444443 334666667777 799999999999999977765432 3
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHHHHHhc------hhhhhhHHHHHHHHHHhhcC
Q 012897 85 PIFVKLLAS---PSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPLLAQLN------ERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 85 ~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~ 154 (454)
....+++.. +...++..+..++.++--..+..+ .......-+...+.... .+..+.+....+..=.....
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~ 1010 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM 1010 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh
Confidence 445555543 444588888888888764332211 00000001111111111 11122222222111111000
Q ss_pred CC--CCCChhhhhchHHHHHHhhc-------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897 155 GK--PQPPFDQVRPALPALAQLVH-------------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH 219 (454)
Q Consensus 155 ~~--~~~~~~~~~~~l~~l~~ll~-------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 219 (454)
.. ...........+..+.+++. ..+.......+.+|.-++...+. ++....+-.|.+.|..
T Consensus 1011 ~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~----Llt~khv~tL~PYL~s 1086 (1692)
T KOG1020|consen 1011 KESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQ----LLTKKHVITLQPYLTS 1086 (1692)
T ss_pred hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCch----hccHHHHHHhhhHHhc
Confidence 00 01111111223333333332 11222334455566666655443 2222444555566654
Q ss_pred C-----CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC---CHHHHHHHHh
Q 012897 220 P-----SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG---NRDQIQAVID 291 (454)
Q Consensus 220 ~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~ 291 (454)
. ...+....+.++-...-.-..-.+.++. .+-..|+..+-.. ...+..+|+.|++.++.. +....+.+..
T Consensus 1087 ~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~-sLEe~L~~~i~k~-g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~ 1164 (1692)
T KOG1020|consen 1087 KASTIEEAQFLYYVIQILECVLPLVANPSESFLA-SLEEDLLKRIVKM-GMATVVEAVSCLGSLATKRTDGAKVVKACFS 1164 (1692)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHHHHHHhc-chHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 3 2233344444443333211111122221 2334455555444 555667777778777752 2232333221
Q ss_pred CCChHHHHHHhhhc--------chhhHHHHHHHHHHhcCCCC----------HHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897 292 AGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGT----------HEQIKYLVREGCIKPLCDLFVCPDPRIV 353 (454)
Q Consensus 292 ~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~----------~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 353 (454)
..-..++.+++. ....-...+.+++-++++.+ ......-...+++..|.-..+..+-.++
T Consensus 1165 --~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR 1242 (1692)
T KOG1020|consen 1165 --CYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELR 1242 (1692)
T ss_pred --HHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHH
Confidence 112222222222 22344566777777777431 1111223445667777777778888999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHH--HHHHHHHHHHhcCcCC
Q 012897 354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEI--YEKAVKILETYWLEED 423 (454)
Q Consensus 354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v--~~~a~~~l~~~~~~~~ 423 (454)
..|+.+|+.++-..+ ..|.+......+..+..+.+.+. +-.+.+.++.|+.+++
T Consensus 1243 ~~al~~Lg~~ci~hp----------------~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1243 RKALINLGFICIQHP----------------SLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred HHHHHHHHHHHhhCc----------------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999986432 23444445566666665555444 3455666666666554
No 177
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.90 E-value=0.039 Score=51.05 Aligned_cols=147 Identities=13% Similarity=0.166 Sum_probs=102.3
Q ss_pred ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHH-HHHhccCChHHHHH
Q 012897 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWA-LSYLSDGTNDKIQA 203 (454)
Q Consensus 125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~ 203 (454)
++..+++.+.+..++..+..|+..|..++...+..-.....-.+..++..-.+.++++...|..+ +..++.+.+...
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence 35667788866688899999999999999987655555555566666666667777766665554 444555554331
Q ss_pred HHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 204 VIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+..+..++...++.....+++.+..++..-...--..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 33344555556777777788888888865432222223347889999999999 99999999999987764
No 178
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.87 E-value=0.058 Score=49.96 Aligned_cols=173 Identities=14% Similarity=0.173 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHH
Q 012897 54 PQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLA 131 (454)
Q Consensus 54 ~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 131 (454)
.+-+..|+.-|..+.. ++.......+. .++..+++.|.+ .++..+..|+++|..++...+..-.. ...-.+..+++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D-stE~ai~K~Le 378 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD-STEIAICKVLE 378 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc-hHHHHHHHHHH
Confidence 4556677765555544 33333333322 356778888887 78899999999999999877631111 01113445555
Q ss_pred HhchhhhhhHHHHHH-HHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCc
Q 012897 132 QLNERAKLSMLRNAT-WTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGV 209 (454)
Q Consensus 132 ~l~~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~ 209 (454)
.- .+.+.++...|. .++..++.+.|. ..+..+..++.+.|......++..+..++..-+ +....++ .++
T Consensus 379 aa-~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di 449 (516)
T KOG2956|consen 379 AA-KDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI 449 (516)
T ss_pred HH-hCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence 55 334444444444 455566655443 234455666666788887888888888875533 2222233 378
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
.|.+++--.+.+..+|+.|++||..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 8888888899999999999999988764
No 179
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.015 Score=59.66 Aligned_cols=161 Identities=23% Similarity=0.243 Sum_probs=122.9
Q ss_pred CCHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 012897 39 GVVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSP 114 (454)
Q Consensus 39 ~~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~ 114 (454)
...|.+++..+++ ++|+++..|.-+|+.+..-+.+.... -+|.|+..+. ++++.+|.+++-+++-++-.-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3577777777543 23999999999999998866555443 3789999998 6999999999999999875444
Q ss_pred hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
..-+. ..+.+...+ .+.++.+++.|..+|.+|... .+....|.++.+..++.++++.++.-|=..+..++
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 32222 356677777 788999999999999999865 46667899999999999999999888877777777
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHP 220 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~ 220 (454)
...... + +++|.++..|.++
T Consensus 1064 ~k~n~i----y--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGNTI----Y--NLLPDILSRLSNG 1083 (1251)
T ss_pred hcccch----h--hhchHHHHhhccC
Confidence 554321 1 4677777777665
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.76 E-value=0.056 Score=46.51 Aligned_cols=141 Identities=11% Similarity=0.142 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC----ChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHH
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED----YPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~ 88 (454)
..|+..|..++++ ++....+++..+.-.|..+|+..+ .+.+|..++.+++.+.+ ++++....+.+..++|..+
T Consensus 68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 3556566666776 788899999988777777776543 25789999999999998 5678888899999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHH------HHH-hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 89 KLLASPSDDVREQAVWALGNVAGDSPRCRD------LVL-SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 89 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~------~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
..++.+++..+..|..++..+..++..... .+. -..++..++..+...+++.+.+..+.+-..|+.++
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 999999999999999999888755432211 111 12245556666667788999999999999999874
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.75 E-value=0.025 Score=55.02 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=138.0
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
+...++|.+++++...|..+|...+.-+-.....-. ...++..+++.+..-+.+.++.+|+..+.++..++..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence 556799999999999999999988887777665533 446777899999999999999999999999999885322
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCC-hHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGL-VGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
...+....++.+...=.+. +..+|....-+++.++.. .+.. ..++ ...+.+.+.+.-..-|..+.+++...
T Consensus 402 -~~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~-----R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 402 -KRNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV-----RKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred -hhhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh-----hccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 2234444555555554544 788999998889888764 2222 2232 34455556666777888888888766
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
...-+... +...+++.+.-+.-+++..++..+..++..++...++.
T Consensus 475 ~~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 475 QEYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 55432221 23457888888888888889988888888887665544
No 182
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.71 E-value=0.31 Score=41.33 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCC----CChhHHHHHHHHHHHhcCCCchhhHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF-------LMRE----DYPQLQFEAAWALTNIASGTSENTKV 77 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l-------L~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (454)
++..+..|+..|.+-....+.-....+..-|....+.+- |..+ ..+.=...|+..|-.+++ .++.+..
T Consensus 37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvAS-HpdTr~~ 115 (293)
T KOG3036|consen 37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVAS-HPDTRRA 115 (293)
T ss_pred CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhc-CcchHHH
Confidence 355666666666665443212222222233444444332 1111 102223455555555666 8999999
Q ss_pred HHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 78 VIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 78 ~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
+.+..+--.+-.+|.. +.+-+|-.++.+++.+.. ++.+.-..+...++++..++.+ ...++..+..|..++..
T Consensus 116 FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim-e~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 116 FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM-ESGSELSKTVATFILQK 194 (293)
T ss_pred HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH-hcccHHHHHHHHHHHHH
Confidence 9998877777777754 457889999999999984 4455667788889999999999 66677788888888888
Q ss_pred hcCCCCCCC--------hhhhhchHH-HHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 152 FCRGKPQPP--------FDQVRPALP-ALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 152 l~~~~~~~~--------~~~~~~~l~-~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
+..++.... +......+. .+.++.+.+++.+..++++|..+++.+.
T Consensus 195 IlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 195 ILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 877753221 112233333 3345566788999999999999998764
No 183
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.67 E-value=0.099 Score=47.42 Aligned_cols=170 Identities=17% Similarity=0.053 Sum_probs=109.6
Q ss_pred CChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 82 GAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 82 g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
++++.|+ ..+++.++.+|+.++.+|+-.|--+...... .++.+...+ +..++.++..|+.++..+........
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 6778899999999999999998655433222 256677777 55588999999999998875532111
Q ss_pred h---------hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC----CCCcchhh
Q 012897 161 F---------DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH----PSPSVLIP 227 (454)
Q Consensus 161 ~---------~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~ 227 (454)
. .....++..+.+.+.+.+++++..++..++.+.-...-.. ...++..|+-+--+ ++..+|..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1 1235678889999999999999999999998764432111 12333333333222 33455555
Q ss_pred HHHHHhHhhccCccchhhhhccCChHHHHHhhcCC
Q 012897 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 262 (454)
Q Consensus 228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~ 262 (454)
-...+-..+...... +..+...+++.+..+...+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 556666666655534 3455557777777776554
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.64 E-value=0.0034 Score=46.96 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=60.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 110 (454)
++..|+++|..++++.+...|+.=|+.++...|..+..+-+.|+=..++.++.+++++++..|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57889999965544888899999999999988999998888899999999999999999999999998774
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.62 E-value=0.0039 Score=46.62 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=60.6
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999665588888899999999999777777666678999999999999999999999999987754
No 186
>PRK14707 hypothetical protein; Provisional
Probab=96.61 E-value=1.7 Score=48.48 Aligned_cols=358 Identities=16% Similarity=0.113 Sum_probs=193.6
Q ss_pred HHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhH
Q 012897 41 VPRFVEFLM-REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 41 l~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
+..++..++ .+++.+.+..+...-.-++. .+..+..+ +...|-.+++.++. .++..+..+...-..++.+ ...+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence 334444443 34446666666666666665 33444333 45567777777776 4455555555444555544 4444
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHH-HhhcCCCCCCChhhh-hchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL-SNFCRGKPQPPFDQV-RPALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
..+-..+ +...++.|.+-++..+-..+..++ ..+..+.. ....+. .++-..+-.+-+-++..+-..+...|..=..
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~-l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPG-LRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHH-HHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 4443333 444555554545554444444444 44544422 222222 2333333344444566665555555544332
Q ss_pred CChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 196 GTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 196 ~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
..+...+ -++...+...+.-| +-++..+...|...|..-....+...+ -++..++..+++-++.-++..+...|+..
T Consensus 320 ~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 320 DDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred ccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 3333322 23333344444444 336666666665555554443443433 33445666666666554366777777777
Q ss_pred HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHH
Q 012897 275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVT 354 (454)
Q Consensus 275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~ 354 (454)
|..-..+.++..+.+-..|+-..|-.+-+=++..+...++.+|.--... +.+.++.|--.++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 7665556666665555444444444443446888888888888766654 556666655566677777777888877665
Q ss_pred HHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH-HHHHHHhc
Q 012897 355 VCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA-VKILETYW 419 (454)
Q Consensus 355 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a-~~~l~~~~ 419 (454)
.+...|..=+..... .+.-|.-.++...|..|...++......| .++..++.
T Consensus 477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Confidence 555555544433222 34455556666777888777776655444 44444444
No 187
>PRK14707 hypothetical protein; Provisional
Probab=96.58 E-value=1.7 Score=48.35 Aligned_cols=360 Identities=15% Similarity=0.099 Sum_probs=186.7
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChh
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWAL-GNVAGDSPR 115 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~~l~~~~~~ 115 (454)
.|+...|-.+-+-+++++.+..+...-..++. ....+..+ +...+-..++.|.. ++...-..++..+ ..++ +.+.
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~ 281 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPG 281 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHH
Confidence 34333443444445545655544444444444 44444333 44446666666665 5554444444444 4454 4444
Q ss_pred hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhc
Q 012897 116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~ 194 (454)
.++.+-..+ +...++-|.+-++..+-..+...|..=..+++.....+....+..+++-| +=++..+-..+..+|..=.
T Consensus 282 l~~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 282 LRKALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHHhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 555443333 34444555455666666655555443333332222222222233333333 3345555555555554433
Q ss_pred cCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHH
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW 273 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~ 273 (454)
..++...+ -++...+..++.-+ +-++......+...|..-.....+..+ -++...+...++-|+.-++..+...++.
T Consensus 361 ~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~ 438 (2710)
T PRK14707 361 VADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVS 438 (2710)
T ss_pred ccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHH
Confidence 33333323 33334455555555 447777777777777666655554444 4455666666666654437777777777
Q ss_pred HHHHHhcCCHHHHHHHHhCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHH-
Q 012897 274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPR- 351 (454)
Q Consensus 274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~- 351 (454)
.|.--..+..+..+.+--.++.. .++.++ =++..+...++..|..-... +.+.++.|.-.++...|-.+-+.++..
T Consensus 439 ~lA~~la~d~~l~~~~~p~~va~-~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~ 516 (2710)
T PRK14707 439 ALAGRLAHDTELCKALDPINVTQ-ALDALSKWPDTPICGQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPI 516 (2710)
T ss_pred HHHHHHhccHHHHhhcChHHHHH-HHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHH
Confidence 77666656566554443333333 333333 35777777777777655544 344555555556667777777777754
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 352 IVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 352 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
....+.+.-..+.... .....|...+....++.+..+++......+..-|...+
T Consensus 517 c~~A~~~lA~rl~~~~--------------~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 517 CAEAASALAERVVDEL--------------QLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred HHHHHHHHHHHhccch--------------hhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 3334444444444211 13444555555666777777776666555555555444
No 188
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.57 E-value=0.06 Score=52.27 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=123.7
Q ss_pred chHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCc
Q 012897 166 PALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 166 ~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.+-|.+.....+ .|+.++..|-.+|..+..-+..... .-+|.++..+. +++|.+|.+|.-.++.++....
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 6889999998888877644333322 56788888885 7999999999999988876443
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
.... ..-..|..-|.+. +..||+.+..++.++.....- --.|-++.+..++.+++.++...|-..+..+
T Consensus 967 ~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 2322 3346788888888 999999999999998864321 1267889999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCC---CCHHHHHHHHHHHHHHHHhhh
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~---~~~~v~~~al~~L~~l~~~~~ 368 (454)
+...+. ..+|++...-.+-.+ ++.. -...++.|..++....
T Consensus 1036 a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098 1036 AKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred Hhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence 885432 223455544444321 2222 2345566666665443
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.54 E-value=0.75 Score=47.08 Aligned_cols=210 Identities=15% Similarity=0.179 Sum_probs=127.4
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---hhhh----hhHHHHHHH
Q 012897 80 DHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAK----LSMLRNATW 147 (454)
Q Consensus 80 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~~~~~a~~ 147 (454)
+.|++..++..+.+ .........+..|...|. .+.+|+.+.+.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 56899999999876 234555666666666654 4678999999999999998885 2222 566666666
Q ss_pred HHHhhcCCCCCCChh-------------hhhchHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 012897 148 TLSNFCRGKPQPPFD-------------QVRPALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210 (454)
Q Consensus 148 ~L~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 210 (454)
++..+.......... ....-+..+++.+.+ .++.+....++.|-+++....+..+.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 666665443211110 022335566666654 468899999999999999988877766652 2
Q ss_pred HHHHHhcCC--CCCcchhhHHHHHhHhhccCc------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897 211 PRLVELLGH--PSPSVLIPALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 282 (454)
Q Consensus 211 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~ 282 (454)
...+.+=.. ....--...+.+++.++.+-+ ..++.+++.|++...+..|... -|.. ....
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~ 339 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD 339 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence 222222111 111111234666666665432 3455677778888777777655 4433 1112
Q ss_pred HHHHHHHHhCCChHHHHHHhhh
Q 012897 283 RDQIQAVIDAGLVGPLVNLLQN 304 (454)
Q Consensus 283 ~~~~~~l~~~~~i~~L~~ll~~ 304 (454)
.......+....+|..+++|..
T Consensus 340 s~eWk~~l~~psLp~iL~lL~G 361 (802)
T PF13764_consen 340 SPEWKEFLSRPSLPYILRLLRG 361 (802)
T ss_pred CHHHHHHhcCCcHHHHHHHHHH
Confidence 3445566666777777777653
No 190
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.52 E-value=0.12 Score=44.76 Aligned_cols=109 Identities=22% Similarity=0.249 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHH
Q 012897 309 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 387 (454)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 387 (454)
....|+.+|.-++.- .+.....+.+...++.|+++++ ...+.++..++.+|..++-.... ....|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~-------------N~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE-------------NQRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH-------------HHHHH
Confidence 445677777777665 3455667778899999999995 45688999999999999876544 35589
Q ss_pred HHhccHHHHHHHhcC--CCHHHHHHHHHHHHHhcCcCCCccccCCC
Q 012897 388 EEAEGLEKIENLQSH--DNNEIYEKAVKILETYWLEEDDETIAAGD 431 (454)
Q Consensus 388 ~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 431 (454)
++.+|+..+..+..+ .+.+++-++...+.-|+.+|..+..++..
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~ 218 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSS 218 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcccc
Confidence 999999999998644 57889999999999999988877665443
No 191
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.24 Score=48.78 Aligned_cols=297 Identities=16% Similarity=0.111 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCh
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIAS--GTSENTKVVIDHGAV 84 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i 84 (454)
.+|+..+..+.+..+.. .=.|+++.+.+.|... +++.-.+.|++.+.++.. ........+++.=++
T Consensus 388 laal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 34555555555543221 1257899999998432 124445667777777665 333444444555567
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
+.++..++++.--++..++..+..+..+ .++......+.+...+.+ .+.+-.++..|+.++.-+..+. .......
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s 537 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS 537 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence 7788888899899999999999998533 223333333466666777 4577889999999999888775 2222222
Q ss_pred h---chHHHHHHhhcCCChhHHHHHHHHHH-HhccCChHHHHHHHHhCcHHHHHHh----cCCCC------CcchhhHHH
Q 012897 165 R---PALPALAQLVHSNDEEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVEL----LGHPS------PSVLIPALR 230 (454)
Q Consensus 165 ~---~~l~~l~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~l----l~~~~------~~v~~~a~~ 230 (454)
. +.++.++.+-..-+.++...++..+. ..+..-......+.. .++..++++ +..++ ++-+.+|..
T Consensus 538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG 616 (970)
T COG5656 538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG 616 (970)
T ss_pred hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 3 33334444444445555544444332 222221122222222 233333333 32221 122344444
Q ss_pred HHhHhhc---cCccch--hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc
Q 012897 231 TVGNIVT---GDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA 305 (454)
Q Consensus 231 ~L~~l~~---~~~~~~--~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~ 305 (454)
.|..+.. .-+... -.-+.....|.+--++++. -.++-.+|+-.+-++.-.+.+.- . +.-|+.+.+.+++.+.
T Consensus 617 iL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~-p-imwgi~Ell~~~l~~~ 693 (970)
T COG5656 617 ILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE-P-IMWGIFELLLNLLIDE 693 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh-h-hhhHHHHHHHhccccc
Confidence 4444332 111111 1112335556666667777 77788888888877765333221 1 1134555555555554
Q ss_pred ch-hhHHHHHHHHHHhcCCC
Q 012897 306 EF-DIKKEAAWAISNATSGG 324 (454)
Q Consensus 306 ~~-~v~~~a~~aL~~l~~~~ 324 (454)
.. .-...+.-++.|+...+
T Consensus 694 ~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 694 ITAVYSEEVADALDNFITYG 713 (970)
T ss_pred chhhhHHHHHHHHHHHHHhC
Confidence 43 55677888888887766
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.45 E-value=0.46 Score=48.26 Aligned_cols=194 Identities=18% Similarity=0.142 Sum_probs=119.1
Q ss_pred HHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHH--HHHHhhcCCCh-h
Q 012897 105 ALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALP--ALAQLVHSNDE-E 181 (454)
Q Consensus 105 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~ 181 (454)
+++++....+.....+.+.++...+...+....+.++...++..+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777788888899999999999999766788899999999999997764443333322222 33334444444 6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHH-HHHhhc
Q 012897 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPY-LLGLLT 260 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~L~ 260 (454)
.-..++..|+.+...++.... ...+..+...+......-............... +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 777777777777655432111 111222222222222111111111222222333 666666
Q ss_pred CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHH
Q 012897 261 HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAI 317 (454)
Q Consensus 261 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL 317 (454)
.+..+.....|.|++.+++...++..+...+.++++.+.+.-... ...++..+...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 665788999999999999998888777777888888777654332 444444444444
No 193
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.39 E-value=1.1 Score=43.73 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 87 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 87 (454)
.++....-|+..|.+..... +...+. ++..++++..+.+ ..||..|+..|-.+|.++++....+ ...|
T Consensus 34 g~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL 101 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVSKV-----ADVL 101 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HHHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHhHH-----HHHH
Confidence 56788888999999988875 333333 5788999999999 9999999999999999877777665 5789
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc--hhhhhhHHHHHHHHHHhhcCCC--CCC--Ch
Q 012897 88 VKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN--ERAKLSMLRNATWTLSNFCRGK--PQP--PF 161 (454)
Q Consensus 88 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~--~~~--~~ 161 (454)
+++|.++++.-...+-.+|..+...++.. .+..+...+. ...++.+++.++..|..=...- ... ..
T Consensus 102 ~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~ 173 (556)
T PF05918_consen 102 VQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQK 173 (556)
T ss_dssp HHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---H
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchH
Confidence 99999988777777777777776444421 2444444442 2456778888887664333222 111 13
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
+...-++..+-+.|.+-...=-...+..|..+-
T Consensus 174 E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk 206 (556)
T PF05918_consen 174 EMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLK 206 (556)
T ss_dssp HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCc
Confidence 344455566667775433333333444455444
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.33 E-value=0.02 Score=46.19 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=100.6
Q ss_pred HHHHHhcC--CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897 211 PRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 288 (454)
Q Consensus 211 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 288 (454)
..++..+. ...+.+|..++-++..+.. ..+.-....+-+.+-..+... +.+-...++.++..+....++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444443 3567899999999888852 112223334445666666666 6678888999999999888888777
Q ss_pred HH-hCCChHHHHHHhh--hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHH-HHHHHHHHHHH
Q 012897 289 VI-DAGLVGPLVNLLQ--NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPR-IVTVCLEGLEN 362 (454)
Q Consensus 289 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~-v~~~al~~L~~ 362 (454)
++ ..|+++.+..++. .++..++..++.+|..-+. +.. +...+.+.+++.|.+.++. +++. ++..++-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~-~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKS-CRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHH-HHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHH-HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77 7889999999999 6789999999999987776 434 4444556789999999964 4455 66666555543
No 195
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.31 E-value=1.2 Score=43.32 Aligned_cols=287 Identities=14% Similarity=0.108 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
-..|..|++.|...+...+...+.. +-..--.++.....++.|..++..|..+......... ... ..+..
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence 4568888999988877742222211 2333345566665578999999999998874433111 111 11122
Q ss_pred hhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh--------------------------hhhHH
Q 012897 90 LLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--------------------------KLSML 142 (454)
Q Consensus 90 lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~ 142 (454)
.+. ...++.-..-+.+|..|+.+.... ...+.+..+.+..-+...- +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 222 233444445566666676554433 2245555666665552111 12233
Q ss_pred HHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCC---hHHHHHHHHhCcHHHHHHhc
Q 012897 143 RNATWTLSNFCRGK-PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELL 217 (454)
Q Consensus 143 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll 217 (454)
...+..+.++.... .........+++..++.+. ++.++.....++..+-.+.... ++... .++..|....
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~ 226 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV 226 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence 33444444444443 2223333344444444442 2233333344444443333211 11111 1222233332
Q ss_pred CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-----cchhHHHHHHHHHHHHhcCCHHHHHHHH-h
Q 012897 218 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-----HKKSIKKEACWTISNITAGNRDQIQAVI-D 291 (454)
Q Consensus 218 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~ 291 (454)
...+....+-.++.||+...-. . ..+..|..+|.++ .+..+.+.|+..+..+..+..+...+-+ -
T Consensus 227 --~~~~l~~~~w~~m~nL~~S~~g--~-----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~ 297 (464)
T PF11864_consen 227 --NSVSLCKPSWRTMRNLLKSHLG--H-----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF 297 (464)
T ss_pred --cccccchhHHHHHHHHHcCccH--H-----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence 2336777788888888863221 1 2356677777321 1455677888889888875422222222 1
Q ss_pred CC--ChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 292 AG--LVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 292 ~~--~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
.- +++.+...++.+++.+-......+.++..
T Consensus 298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 22 78888888888877777778888877773
No 196
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.24 Score=48.51 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
.+.+..+++...+++ ..+|..++..|..+.....+ ++.-+-.++...+..-+.+..+.+|.+|+.+|+.+-.+...-
T Consensus 84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 456667777777778 89999999999999984333 333334467788888888899999999999999996332211
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTL 149 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 149 (454)
+..+...+..+++.+++++|++.++..+
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 1234677888888899999999876544
No 197
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.22 E-value=0.45 Score=44.50 Aligned_cols=188 Identities=12% Similarity=0.131 Sum_probs=119.5
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-----------------------C------hhHHHHHH----
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-----------------------Y------PQLQFEAA---- 61 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----------------------~------~~v~~~a~---- 61 (454)
.|++.|-.++... +.....+.+.+++..+++.++..- . +.-|...+
T Consensus 3 ~av~~ld~~~~~~-~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL 81 (379)
T PF06025_consen 3 RAVRFLDTFIDSS-PDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL 81 (379)
T ss_pred HHHHHHHHHHhcc-HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence 4566666666654 455666778888888876543210 0 01123333
Q ss_pred HHHHHhcC---CCchhhHHHHh-CCChHHHHHhhCCCC---HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc
Q 012897 62 WALTNIAS---GTSENTKVVID-HGAVPIFVKLLASPS---DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN 134 (454)
Q Consensus 62 ~~L~~l~~---~~~~~~~~~~~-~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 134 (454)
+.+..+.. +..+....+++ ..+...|...+++.. +.+-..++.++..+....|..-..+.+.|.++.+++.+.
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 33333333 22333344455 455666777777643 788888999999999888888889999999999999885
Q ss_pred -h--hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC-------hhHHHHHHHHHHHhccCChHHHHH
Q 012897 135 -E--RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND-------EEVLTDACWALSYLSDGTNDKIQA 203 (454)
Q Consensus 135 -~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~ 203 (454)
. .++.++....-.++..||-+..........+.++.+++++.+++ .+........+-.+.++.+.....
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~ 240 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPD 240 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHH
Confidence 2 24678888888899999988755555555677888887776542 123333344445555665544443
No 198
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.19 E-value=0.75 Score=44.22 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=81.5
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....+.+..++..+.+.+..|+..++..|+.++..-.+. +..+-.+++..|...+-+..+.||..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4556788888888889999999999999999887654433 444555888889888889999999999999988864332
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
... ......+..+++..++.+||+.|+.-+
T Consensus 165 nee-----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 111 123456777777666889999886544
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.15 E-value=0.18 Score=49.37 Aligned_cols=228 Identities=15% Similarity=0.165 Sum_probs=150.0
Q ss_pred HHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897 33 EEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 111 (454)
Q Consensus 33 ~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 111 (454)
+.++...+++.|+..+.-++ ..++..- +-.++.... .++ ++.+++|.+++++..++..+|-..+.-+-+...
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltp-l~k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~ 359 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGDAASDFLTP-LFKLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID 359 (690)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhhhH-HHHhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh
Confidence 34455556777766665544 1222211 122222222 122 567899999999999999999877766666553
Q ss_pred CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897 112 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS 191 (454)
Q Consensus 112 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~ 191 (454)
. ..+.+.+..+++.+..-+ .+.++.+++..+.++..|+.--... ......+..+..+-.+.+..++.+..-|++
T Consensus 360 ~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 360 H---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred h---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeec
Confidence 3 345566677788888888 7888999999999988887542111 233456666666666677889999998999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHH
Q 012897 192 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEA 271 (454)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a 271 (454)
.++....... .+.-+...+..-+.++-..-|.++...+.......+ ..-+...+++.+..+..++ +..+|..|
T Consensus 434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a 506 (690)
T KOG1243|consen 434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDP-EKTVRDTA 506 (690)
T ss_pred ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCc-ccchhhHH
Confidence 8886643221 222223344445677777788888888766654333 2334557888888888888 88899988
Q ss_pred HHHHHHHhc
Q 012897 272 CWTISNITA 280 (454)
Q Consensus 272 ~~~L~nl~~ 280 (454)
..++..+-.
T Consensus 507 ~~~i~~fl~ 515 (690)
T KOG1243|consen 507 EKAIRQFLE 515 (690)
T ss_pred HHHHHHHHh
Confidence 888776654
No 200
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=1.7 Score=46.74 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=93.8
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 287 (454)
+++|.|..-|...+..+|..|...++.+......... =-........+.-+.+. +..||..++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 6788888888899999999999999999875442221 01124566677777777 889999999998888776555432
Q ss_pred HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
... ....+.. .+.|++++.....++..+.. . .....+... .+..+.+.+.+..+.||..|+..|..+.+.
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v--~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV--M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh--h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 2222222 22344444333332222211 1 111122223 666777778888999999999999999874
No 201
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.02 E-value=0.18 Score=51.38 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=133.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
+-+.+..-+.+++..-|..++..+...+.... ........+.+..++.....+.+..+...++.+|..++..-......
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34455555666888889999988888775543 11111122334555566557778888889999999988775444555
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc-
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF- 241 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~- 241 (454)
+...++|.++..+......++..+..++-.++....- ....+.++..+.+.++.++..+...+.......+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 6678889999999888888888887777666543221 14577888999999999999988888777765441
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
....-.-.+.++.++....+. +..||..|..+++-+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 111112236678888888888 89999999999887765
No 202
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.02 E-value=0.14 Score=44.45 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
......|+..|..++--. ++....+.+...++.|+.+|.....+.++..++.+|..+..+++.+...+-+.+++..++.
T Consensus 105 ~~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 445667888888887665 6667778888999999999965544899999999999999889999999999999999999
Q ss_pred hhCC--CCHHHHHHHHHHHHHhhC
Q 012897 90 LLAS--PSDDVREQAVWALGNVAG 111 (454)
Q Consensus 90 lL~~--~~~~v~~~a~~~L~~l~~ 111 (454)
++++ .+.+++-.++..|.-+..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 9987 458888888888877664
No 203
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.98 E-value=0.92 Score=46.28 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
..++..|+..+....+.... ..+.+.+ +-.|-.+.++.- ..++..++..|+.+....+... -+....+..|+.
T Consensus 591 ~~v~k~a~~~l~S~l~~cD~---~~~fe~~-L~iLq~lCrd~~-vsvrk~~~~Sltel~~~~pr~~--~~~~~wl~~li~ 663 (1529)
T KOG0413|consen 591 APVKKAACSLLKSYLSYCDE---ASKFEVV-LSILQMLCRDRM-VSVRKTGADSLTELMLRDPRLF--SLSSKWLHTLIS 663 (1529)
T ss_pred cccchhhHHHHHHHHhccch---hhcchhH-HHHHHHHhcCcc-hHHHHHHHHHHHHHHhhCchhh--hhhHHHHHHHHH
Confidence 46777777777777666411 1122222 444555555566 7889999999998887555443 334566777888
Q ss_pred hhCCCCHHHHHHHHHHHHHh
Q 012897 90 LLASPSDDVREQAVWALGNV 109 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l 109 (454)
++.+.+..+.+.+...|..+
T Consensus 664 ~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 664 MLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 88877777777777655544
No 204
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.94 E-value=0.053 Score=43.71 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=96.0
Q ss_pred ChHHHHHhhcC-CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH
Q 012897 251 ALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 329 (454)
Q Consensus 251 ~l~~L~~~L~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 329 (454)
.++.++..|.. ...+.+|..+.-++..+....++ . ...-+-+.+-..+...+.+-...+..++..+... .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~---~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDAARE---E-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH---H-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 34555666654 43778999999999888522122 1 1122334444555555666777889999888776 45555
Q ss_pred HHH-HHcCCcHHHhhccC--CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCH
Q 012897 330 KYL-VREGCIKPLCDLFV--CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNN 405 (454)
Q Consensus 330 ~~l-~~~~~i~~L~~~l~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~ 405 (454)
..+ ..+|+++.+..+.. .++..+...++.+|..-+.... +..+....+++-|.++. +++++
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~---------------~r~~I~~~~~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS---------------CRTFISKNYVSWLKELYKNSKDD 143 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH---------------HHHCCHHHCHHHHHHHTTTCC-H
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH---------------HHHHHHHHHHHHHHHHHccccch
Confidence 544 46789999999998 7888888888888776653322 33344466788999887 56666
Q ss_pred H-HHHHHHHHHH
Q 012897 406 E-IYEKAVKILE 416 (454)
Q Consensus 406 ~-v~~~a~~~l~ 416 (454)
. ++.+|.-.|-
T Consensus 144 ~~ir~~A~v~L~ 155 (157)
T PF11701_consen 144 SEIRVLAAVGLC 155 (157)
T ss_dssp H-CHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 6 7888876654
No 205
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.92 E-value=0.46 Score=44.30 Aligned_cols=275 Identities=19% Similarity=0.162 Sum_probs=139.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRD 118 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~ 118 (454)
+..+++-+.......+|..++--|+.-+. ++.++..+..+|.++.+++.+.+ ++..+...+ +.++.-++.+.. .-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 66677777755547889888888888888 89999999999999999999955 444244333 444444544443 223
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc---------CCChhHHHHHHHH
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---------SNDEEVLTDACWA 189 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~v~~~a~~~ 189 (454)
.+........+++++.-+....+..... ........ .........+...+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~ls-k~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLS-KVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhhhhhhh-HHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334444555566663000000000000 00000000 000111111112210 0112223334444
Q ss_pred HHHhc--------------cCChHHHHHHHHhCcHHHHHHhcCC----C-------CC-----cchhhHHHHHhHhhccC
Q 012897 190 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLGH----P-------SP-----SVLIPALRTVGNIVTGD 239 (454)
Q Consensus 190 L~~l~--------------~~~~~~~~~~~~~~~i~~L~~ll~~----~-------~~-----~v~~~a~~~L~~l~~~~ 239 (454)
+-.++ ...+...+.+...|++..++..+.+ . .+ .....++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44332 1111223445566778888777641 1 11 13455788888888766
Q ss_pred ccchhhhhcc--CChHHHH-HhhcCC--cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-----------
Q 012897 240 DFQTQCIITY--GALPYLL-GLLTHS--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ----------- 303 (454)
Q Consensus 240 ~~~~~~~~~~--~~l~~L~-~~L~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----------- 303 (454)
......++.. +.+..+. .++... ........++..+.|++..++.....+...++...+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6555444432 2232222 222222 13344567888889999887766666554433222221111
Q ss_pred ---hcchhhHHHHHHHHHHhcCCC
Q 012897 304 ---NAEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 304 ---~~~~~v~~~a~~aL~~l~~~~ 324 (454)
....+...-++.++.|++...
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 113455666777777777654
No 206
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.89 E-value=0.72 Score=40.71 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=124.5
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897 43 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 43 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~ 120 (454)
.|-..|.+++ +.+|..|+..|..+...-+.. .....-+..|+.++.+ .+......++..+..+.....-.....
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3556788888 899999999999988743322 1222335666665544 455555555666666653222111110
Q ss_pred HhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-CChhHHHHHHHHHHHhccCCh
Q 012897 121 LSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-NDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 121 ~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 198 (454)
...+..+.+... +......|..+...+..+..+....-......++..+++.++. .||.-...+...+..+...-+
T Consensus 79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 112233333221 2224567788888888887664211122335667777777764 478877777777766654433
Q ss_pred HHHHHHHHhCcHHHHHHhcC--------C-C-CC-c-chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchh
Q 012897 199 DKIQAVIEAGVCPRLVELLG--------H-P-SP-S-VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKS 266 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~--------~-~-~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~ 266 (454)
. . ...+.+...+. . + ++ . .+..--..|.+....++.. ..-.++.|++.|.++ .+.
T Consensus 157 ~--~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 157 I--S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPS 223 (262)
T ss_pred c--c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcH
Confidence 1 1 22333333321 1 1 11 2 2333334444444434322 235689999999999 889
Q ss_pred HHHHHHHHHHHHhc
Q 012897 267 IKKEACWTISNITA 280 (454)
Q Consensus 267 v~~~a~~~L~nl~~ 280 (454)
++..++.+|..++.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998886
No 207
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.88 E-value=0.012 Score=32.45 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIAS 69 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 69 (454)
++|.+++++++++ +++|..|+++|+.++.
T Consensus 1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 3789999999999 9999999999999875
No 208
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.88 E-value=0.017 Score=31.91 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.6
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 167 ALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
++|.+.+++.+++++||..|+.+|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.86 E-value=0.15 Score=52.03 Aligned_cols=191 Identities=14% Similarity=0.104 Sum_probs=131.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh-cCCCCCcchhhHHHHHhHhhccCccchhhh
Q 012897 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246 (454)
Q Consensus 168 l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 246 (454)
-+.+-.-+.+.+..-+..++..+............ ....+.+..++.. +.+.+..+...++.+|..++..........
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 33444455677888888888888877655431111 1111333333333 356677888889999999987655443322
Q ss_pred hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
..+..+.++..+... ...++..+..++-.++...+- ..+++.+...+.++++.++..+...+.......++
T Consensus 334 -~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 236778888888888 788888877777766653222 24678888999999999999988888777665442
Q ss_pred HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 327 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 327 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
.....-.-.++++.++...++.+.+||.+++.++..+++...
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 222222334678999999999999999999999999987543
No 210
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.79 E-value=1.5 Score=49.28 Aligned_cols=265 Identities=13% Similarity=0.066 Sum_probs=141.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCC--CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 7 SDDSSLQLEATTQFRKLLSIER--SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
+.+..+...|+..|++++...- .+....-.....+.++..++.+..+.++++..++|+.++..... .-+..| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence 4467889999999988765421 12111223345678888888776668999999999999876221 222334 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc--
Q 012897 85 PIFVKLL----ASPSDDVREQAVWALGNVAGDSPRC-----RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC-- 153 (454)
Q Consensus 85 ~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~-- 153 (454)
+.+..++ .+.++.+...+..++..++.+.-.. ...+ ...+..+..+..+..+.++--.|+..|+.++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 3333433 3467888888888888776432110 0111 1234444444433334445455555555431
Q ss_pred --CCC----------C-------------C------CChhhhhchHHHH---HHhhcCCChhHHHHHHHHHHHhccC---
Q 012897 154 --RGK----------P-------------Q------PPFDQVRPALPAL---AQLVHSNDEEVLTDACWALSYLSDG--- 196 (454)
Q Consensus 154 --~~~----------~-------------~------~~~~~~~~~l~~l---~~ll~~~~~~v~~~a~~~L~~l~~~--- 196 (454)
... . . .........+|.| ..+.....++||..|+..|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 100 0 0 0000112234444 4445677899999999999877632
Q ss_pred --ChHHHHHHHHhCcHHHHHHhcCCC----------------C-C--c----chhhHHHHHhHhhccCccchhhh--hcc
Q 012897 197 --TNDKIQAVIEAGVCPRLVELLGHP----------------S-P--S----VLIPALRTVGNIVTGDDFQTQCI--ITY 249 (454)
Q Consensus 197 --~~~~~~~~~~~~~i~~L~~ll~~~----------------~-~--~----v~~~a~~~L~~l~~~~~~~~~~~--~~~ 249 (454)
+++....+++ +++-.++..++.. + . + +...+..+|..++.--..+...+ +=.
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444454 4444444443210 0 0 0 12333344444443211121111 112
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+++..|..++..+ +..+-+.+..+|.++..
T Consensus 1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 4555666666777 77888888888888775
No 211
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=2.3 Score=42.05 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=120.3
Q ss_pred HHHHHhcCCCCCcchhhHHHHHhHhhccCcc-----chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 211 PRLVELLGHPSPSVLIPALRTVGNIVTGDDF-----QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 211 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
+.+..-|+-.+..||.+|+..+.++---.+. ....+++ +-...+.++|.++ -+.+|..|..-++.....
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~---- 250 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSK---- 250 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH----
Confidence 4455556778999999999998887532221 1223333 3346788999999 999999998888877642
Q ss_pred HHHHHhCCChHHHHHHhh-----hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897 286 IQAVIDAGLVGPLVNLLQ-----NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L 360 (454)
.+.++-..++..++.-+. +...+||......|..++.+. ..-.. .+ .++++|-..+.+....|+.+..+.|
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~-le-~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPL-LE-QLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhH-HH-HHHHhcchhhhccchhHHHHHHHHH
Confidence 233333334444443332 235689988999998887743 22122 11 2566777788888899999998888
Q ss_pred HHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 361 ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 361 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
..+=...- . .|...+. .-..|.+|..+.-+.-+..+.-++..|++...++
T Consensus 327 l~ik~vra-~-----------~f~~I~~---~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e 376 (1005)
T KOG1949|consen 327 LKIKAVRA-A-----------KFWKICP---MDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE 376 (1005)
T ss_pred HHHHhhhh-h-----------hhhcccc---HHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH
Confidence 87743210 0 0222222 2244556666666667777788888888876643
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.65 E-value=0.13 Score=34.98 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 012897 268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREG 336 (454)
Q Consensus 268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 336 (454)
.+.|.|++++++.. +.....+.+.++++.++++... +...+|..+..+|+-++. +.+-.+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999864 5556566678999999999876 588999999999999988 556555555443
No 213
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.61 E-value=2 Score=43.84 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=109.2
Q ss_pred HHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhc-chh
Q 012897 231 TVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNA-EFD 308 (454)
Q Consensus 231 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~ 308 (454)
++++....++..++.+++.+++..+...++.-....++..+...++|++...+..-.... +.--...+..++..- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 778888888889999999999999999998655778999999999999873221111111 100012233333333 336
Q ss_pred hHHHHHHHHHHhcCCCCH--------HHHHHHHH--------------cCCcHH-HhhccC-CCCHHHHHHHHHHHHHHH
Q 012897 309 IKKEAAWAISNATSGGTH--------EQIKYLVR--------------EGCIKP-LCDLFV-CPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 309 v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~i~~-L~~~l~-~~~~~v~~~al~~L~~l~ 364 (454)
.-..|+..|..+...+++ .....+.+ ...... +..++. +..+..+..|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677788888877775321 00011110 011122 333343 344567788888888888
Q ss_pred HhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHh
Q 012897 365 KVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETY 418 (454)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~ 418 (454)
..... ++..+.+.|++..+.++. .+...+++..+..++...
T Consensus 654 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 654 EQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 75433 577888899999998773 333566777777666544
No 214
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.58 E-value=1.3 Score=39.05 Aligned_cols=219 Identities=14% Similarity=0.093 Sum_probs=126.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR--EDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
..|.++|+.+|..|+..|..++..-+... ....-+..|+.++.+ .+ ......++..+..+.. ........ .
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~-~~~~~~~~-~ 78 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVK-MKNFSPES-A 78 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHh-CcCCChhh-H
Confidence 35789999999999999999988753222 111124444444332 23 4445555777777664 22211111 1
Q ss_pred CCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 81 HGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVL--SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 81 ~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
..++..+.+-.. +.....|..+...+..+..... ..+. ..+.+..+++.+..+.||.-...+...+..+...-
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 122333333222 2335678888888888864422 2222 23457778888877788988888888888887664
Q ss_pred CCCChhhhhchHHHHHHhhc-----C-CCh-h-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhH
Q 012897 157 PQPPFDQVRPALPALAQLVH-----S-NDE-E-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPA 228 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~-----~-~~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 228 (454)
+. ......+...+....- . +|+ . .+...-..|.+.....+ .+..-.++.++..|.++.+.++..+
T Consensus 156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCCCcHHHHHH
Confidence 42 2222333333333221 1 122 1 23333334444333333 2233678999999999999999999
Q ss_pred HHHHhHhhcc
Q 012897 229 LRTVGNIVTG 238 (454)
Q Consensus 229 ~~~L~~l~~~ 238 (454)
+.+|..++..
T Consensus 229 L~tL~~c~~~ 238 (262)
T PF14500_consen 229 LQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHH
Confidence 9999888753
No 215
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=3.2 Score=41.65 Aligned_cols=303 Identities=11% Similarity=0.087 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCChHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID--HGAVPIF 87 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L 87 (454)
.-+|...++.+.+..+.......+ .-.-..+++++++.++--++..+++++.-...+-.-..+.+.. ......+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k----~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELK----PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHH----HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 345667777777766543111111 1234567888888865778889999998888743333333221 3445555
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh---c--hhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 88 VKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL---N--ERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 88 ~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---~--~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
.+++.. +.-+.|...+.+++.+.....+. +. .....+++++ - ..+++-++...+.+|.++...-.....
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~---I~--P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~ 651 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEH---IA--PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF 651 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hh--HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc
Confidence 566654 55666777777777765322211 10 0122222222 1 223455677777888888766444444
Q ss_pred hhhhchHHHHHHhhcCCChh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897 162 DQVRPALPALAQLVHSNDEE---VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 238 (454)
....-.+|++-...+-.+|+ ..+.+...-.....+.+.....+. +++|.+...+....+ ....++.++....--
T Consensus 652 ~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilL 728 (978)
T KOG1993|consen 652 EFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILL 728 (978)
T ss_pred cchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhh
Confidence 43344444444443322222 233333322222222222222222 456677766654432 233344444333221
Q ss_pred CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHH
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWA 316 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~a 316 (454)
.......-...|+.+.+..++.+- ..+-....+.++..+...++ ........++++.+..-+-. +.|.+...-+.+
T Consensus 729 d~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~v 806 (978)
T KOG1993|consen 729 DNTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLV 806 (978)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHH
Confidence 111111112235666677776655 44444555666666665544 44455567788888776643 367788888888
Q ss_pred HHHhcCCCCH
Q 012897 317 ISNATSGGTH 326 (454)
Q Consensus 317 L~~l~~~~~~ 326 (454)
++.+...++.
T Consensus 807 vaRi~l~n~~ 816 (978)
T KOG1993|consen 807 VARISLRNPS 816 (978)
T ss_pred HHHHHhcChH
Confidence 8888776443
No 216
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.43 E-value=0.18 Score=40.68 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=86.3
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
..++.|.++|+.+.++.+|.+++++|+.+-.-+|-..+.+.... +.-. -.+.+......... ........ +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~-~~~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLP-MMGISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHh-hccCCCch----H
Confidence 35788999999887699999999999999886665544322211 1000 01111112221111 11111112 2
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
...-...+..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222235777888885444344444566666666654444456777899999999999877788887776666554
No 217
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.39 E-value=1.8 Score=38.34 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=131.5
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH---HhcCChHHHHHHhchhh-hhhHHHHHHHHHHh
Q 012897 76 KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV---LSQGALIPLLAQLNERA-KLSMLRNATWTLSN 151 (454)
Q Consensus 76 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~ 151 (454)
..+.+.|.+..++..+..-+.+-+..++.+..++-...-..+... +.. -.+.+-.++.... .+++.-.+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 345678999999999999888888888888888864332222111 111 1222333332222 24444444444444
Q ss_pred hcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhcCCCCCcchhh
Q 012897 152 FCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV----CPRLVELLGHPSPSVLIP 227 (454)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~v~~~ 227 (454)
..++.........+..+.........++-++...|..+...+.......+..++..+. .+.--.++.+++.-++..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 4444333333334555666667777777788888888888877655545455554432 333556778899999999
Q ss_pred HHHHHhHhhccCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 228 ALRTVGNIVTGDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 228 a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+...++.+..+.+.. .+.+.+..-++.++.+|+.+ +..++-+|.....-...
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA 286 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA 286 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence 999999998655422 33344456788999999999 89999999988877765
No 218
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.35 E-value=1.2 Score=38.70 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=114.3
Q ss_pred HHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897 85 PIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 163 (454)
Q Consensus 85 ~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (454)
+.|+. .-+..+++++...+.+|..++.+...+... ++..+..+. ..++......+...+..+....+ ..+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~-~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLV-EQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHH-cCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 34444 334578999999999999998765222222 134444444 44445555556666666665432 111
Q ss_pred hhchHHHHHHh--hc--------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHH
Q 012897 164 VRPALPALAQL--VH--------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTV 232 (454)
Q Consensus 164 ~~~~l~~l~~l--l~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L 232 (454)
+.+..++.. ++ +...+.......++..+|...++. ...+++.+..++ .+.++.++..++..|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 333333322 11 122344555556788888776652 235677888888 778888899999999
Q ss_pred hHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC--CHHHHHHHHhCCChHHHHHHhhhcch
Q 012897 233 GNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLLQNAEF 307 (454)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~ 307 (454)
..++...--... .....+.+-+..+..+.+.+..+..+..+..+ +.+.. .-....++..+-++....+.
T Consensus 147 ~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~-~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 147 APLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEY-EELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhh-hHHHHHHHHHHHhhcccccc
Confidence 999943221111 34456666666665666666655555555442 12222 22334566666666665543
No 219
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.28 E-value=1.4 Score=41.20 Aligned_cols=274 Identities=17% Similarity=0.170 Sum_probs=138.8
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHH-HHHhhcCCCCCCCh
Q 012897 84 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW-TLSNFCRGKPQPPF 161 (454)
Q Consensus 84 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~ 161 (454)
+..++.-+.. ....+|..++.-|+.-|. ++.++..+...|....+++.+...++..+...+.. ++.-++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 5666666663 457788888888888775 46689999999999999999955544434444444 44444554444444
Q ss_pred hhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---C------CCCCcchhhHHHH
Q 012897 162 DQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---G------HPSPSVLIPALRT 231 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~------~~~~~v~~~a~~~ 231 (454)
.........+..++..... .+....- ...........+ ..+..+...+ . .....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3455666777777761100 0000000 000000011111 1122222222 1 1223445556666
Q ss_pred HhHhhc--------------cCccchhhhhccCChHHHHHhhcC----Cc-----------chhHHHHHHHHHHHHhcCC
Q 012897 232 VGNIVT--------------GDDFQTQCIITYGALPYLLGLLTH----SH-----------KKSIKKEACWTISNITAGN 282 (454)
Q Consensus 232 L~~l~~--------------~~~~~~~~~~~~~~l~~L~~~L~~----~~-----------~~~v~~~a~~~L~nl~~~~ 282 (454)
+-.++. ..+..++.+...|++..++.++.. .. +...-..+..+|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666641 111234455566788888888752 10 1112334556666666544
Q ss_pred HHHHHHHHh--CCChHHHHHH----hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHH---hhc----cC---
Q 012897 283 RDQIQAVID--AGLVGPLVNL----LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL---CDL----FV--- 346 (454)
Q Consensus 283 ~~~~~~l~~--~~~i~~L~~l----l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L---~~~----l~--- 346 (454)
.++..+++. .+.++.+... ...........+++.+.|+.... +..+..+...++...+ ... +.
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 444444442 2333333322 22234455678888888988764 3333333333222211 111 11
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhh
Q 012897 347 ----CPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 347 ----~~~~~v~~~al~~L~~l~~~~ 367 (454)
...-+....++++|.|+....
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeC
Confidence 112345666777777776543
No 220
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.26 E-value=0.57 Score=44.69 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC----CCCChhhhhchHH
Q 012897 94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALP 169 (454)
Q Consensus 94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~ 169 (454)
+|+-+....++++..+..........+... .+..+....+...++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 466677777777777655444443443221 22223333333445555555555555554432 2223345577889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCc---chhhHHHHHhHhhccCccchhh
Q 012897 170 ALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
.+..+|..+-.+..-++...++.+.+..+ .... ......+-.++...-++ -.-...+.|..+....+. .
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~---~ 193 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS---F 193 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG---G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch---h
Confidence 99999998888888888888888775544 1111 11112222222222222 223344555555543332 2
Q ss_pred hhccCCh----HHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHH
Q 012897 246 IITYGAL----PYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISN 319 (454)
Q Consensus 246 ~~~~~~l----~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~ 319 (454)
+...+-+ ..+-+++.++ .. -..+...|..+... ..+.....+ ..++..++.-+++ +.++..+.-+..++.
T Consensus 194 i~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 194 IVANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp ----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 2333333 3344555555 22 24566677666653 233333333 2345555555554 355555555555555
Q ss_pred hcCCCCHHH
Q 012897 320 ATSGGTHEQ 328 (454)
Q Consensus 320 l~~~~~~~~ 328 (454)
++....++.
T Consensus 270 ~~~~~g~~~ 278 (435)
T PF03378_consen 270 FAIKYGPDF 278 (435)
T ss_dssp HHHHH-HHH
T ss_pred HHHHcCHHH
Confidence 544333333
No 221
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.23 E-value=0.031 Score=46.83 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC--------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCChH
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE--------DYPQLQFEAAWALTNIASGTSENTKVVI-DHGAVP 85 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~ 85 (454)
..+..|...+...+...++.+++.|++..|+..|..- .+......++.||..+.. +......++ ..+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHH
Confidence 4555565556554344578888999999999877642 225788999999999998 445555555 468999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897 86 IFVKLLASPSDDVREQAVWALGNVA 110 (454)
Q Consensus 86 ~L~~lL~~~~~~v~~~a~~~L~~l~ 110 (454)
.++..|.+++..++..++.+|..+|
T Consensus 162 ~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887
No 222
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.22 E-value=3.2 Score=40.20 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=77.9
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
.|.+..+++.+.+++ ..+|..++++|..++. .-.-.+..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-.....-.
T Consensus 90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 356777777888888 8999999999999887 33333444556788888888888889999999999998863322211
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.. ....++..++.+++.+|++.|+ .++.-+
T Consensus 168 n~-----~~n~l~~~vqnDPS~EVRr~al---lni~vd 197 (885)
T COG5218 168 NR-----IVNLLKDIVQNDPSDEVRRLAL---LNISVD 197 (885)
T ss_pred HH-----HHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence 12 2346777777889999999765 455544
No 223
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.16 E-value=0.63 Score=38.30 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCC-Cch----hhHHHHh------CCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 012897 56 LQFEAAWALTNIASG-TSE----NTKVVID------HGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 123 (454)
Q Consensus 56 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (454)
+|..|+.+|..++.. ++. ....++- .+.-+.|+ -++.++++.+|..|+.++..+..+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 567777777777763 111 1111111 12333444 45678999999999999999886543322221111
Q ss_pred C-------------------ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC--hhhhhchHHHHHHhhcCCChhH
Q 012897 124 G-------------------ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--FDQVRPALPALAQLVHSNDEEV 182 (454)
Q Consensus 124 ~-------------------~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~l~~ll~~~~~~v 182 (454)
. .-..|+..+..+.+..+....+.++..+....|..+ ......++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 123345555556677888899999999998864433 3445677777888888999999
Q ss_pred HHHHHHHHHHhccCC
Q 012897 183 LTDACWALSYLSDGT 197 (454)
Q Consensus 183 ~~~a~~~L~~l~~~~ 197 (454)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998876543
No 224
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=6.9 Score=43.51 Aligned_cols=274 Identities=15% Similarity=0.139 Sum_probs=142.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChh
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFD 162 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 162 (454)
...++..+..+++..+-.+..+++.++..-+... . -....+..+..+.+..++-.|.-...+++.+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 4555566667888888888888888874322110 0 11124555666656666777777777888887776 334444
Q ss_pred hhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CC--CcchhhHHHHHh-----
Q 012897 163 QVRPALPALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PS--PSVLIPALRTVG----- 233 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~--~~v~~~a~~~L~----- 233 (454)
.....+..+..+-+++ .|.|+.+++.++..+...........++ ..+..+..++-. +. .++...--+++.
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 5566677777776654 5699999999999988665444333333 334444444433 21 222222222222
Q ss_pred -Hhh-------ccCcc-chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh
Q 012897 234 -NIV-------TGDDF-QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN 304 (454)
Q Consensus 234 -~l~-------~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 304 (454)
++. ..+.. ....-.....+....-++.++ ++.++..+..++.++-...+..... .-+++.++.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 222 11111 011111222233334444555 8889999999998876543332111 1245556665554
Q ss_pred cchhhHHHHHHHHHHhcCCCCHHHH---H--------------HHH-HcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHH
Q 012897 305 AEFDIKKEAAWAISNATSGGTHEQI---K--------------YLV-REGCIKPLCDLFVC-PDPRIVTVCLEGLENILK 365 (454)
Q Consensus 305 ~~~~v~~~a~~aL~~l~~~~~~~~~---~--------------~l~-~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~ 365 (454)
.-.-.|......+..+......+.+ . ... +.|+=..+..++.. .|.++.......+.+++.
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~ 1189 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLN 1189 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 4333333333334333332111100 0 001 23334445555553 345566666777766543
No 225
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.09 E-value=2.1 Score=37.26 Aligned_cols=141 Identities=23% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 120 (454)
++.|+.-+....++..+...++.|..++........ -++..+..+.+.+....+..+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455655455554599999999999999984412222 235667777777777777778888888875554321
Q ss_pred HhcCChHHHHHHh---------chhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHH
Q 012897 121 LSQGALIPLLAQL---------NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV-HSNDEEVLTDACWAL 190 (454)
Q Consensus 121 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L 190 (454)
+.+..++..+ ..+...+........+..+|...+. ....+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1233333331 0122334445555678888877655 4456788888888 788899999999999
Q ss_pred HHhccC
Q 012897 191 SYLSDG 196 (454)
Q Consensus 191 ~~l~~~ 196 (454)
..++..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999843
No 226
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=4.4 Score=40.50 Aligned_cols=282 Identities=15% Similarity=0.078 Sum_probs=155.6
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897 81 HGAVPIFVKLLAS--------PSDDVREQAVWALGNVAG--DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150 (454)
Q Consensus 81 ~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 150 (454)
+|+++.+...|.. .++.-.+.|++.++++.. ..+....-+++.-+++.++..+ +++..-++..+|..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 5889999998832 234556678888888764 2222222333333344444444 5566678889999999
Q ss_pred hhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc---CCCCCcchhh
Q 012897 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---GHPSPSVLIP 227 (454)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~ 227 (454)
.+..+ -..............+++.+++-.++..|+.++..+..+. +....+...+.+.+-++| +.-+-++...
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 98544 3333444566777788888888889999999998887664 233344444443333333 3333333333
Q ss_pred HHHH-HhHhhccCccchhhhhc---cCChHHHHHhhcCCc-----chhHHHHHHHHHHHHhc------CCHHHHHHHHhC
Q 012897 228 ALRT-VGNIVTGDDFQTQCIIT---YGALPYLLGLLTHSH-----KKSIKKEACWTISNITA------GNRDQIQAVIDA 292 (454)
Q Consensus 228 a~~~-L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~ 292 (454)
++.. +..++..-......+.. ..+++....++..++ ..+-+-.|.+.|..+.. ..+...+.+. .
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le-~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE-V 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-H
Confidence 3322 22222211111111111 133344444444331 11223345555544432 2344443333 3
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH-HHHHHHHHHHHHHHHhhhhhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP-RIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~al~~L~~l~~~~~~~~ 371 (454)
...|..--.+++.-.++-.+|+..+-+.... ..+..+ +--|+.+.+.+++.+... .-...+..++.|++.++.++-
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef 717 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEF 717 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence 3455554555666677777888887766542 112111 122567778888877664 556677889999999886543
No 227
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.96 E-value=2.1 Score=38.04 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=137.0
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh---hhh---hchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF---DQV---RPALPALAQLVHSNDEEVLTDACWALS 191 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~---~~~l~~l~~ll~~~~~~v~~~a~~~L~ 191 (454)
..+...|.+..+++.+ ...+-+.+..++.+..++.+..-.... .+. ...+..++.--.. .+++..++...+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4456677888888888 666778888888888888776522221 222 3344444444221 3555555555555
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCC----hHHHHHhhcCCcchhH
Q 012897 192 YLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGA----LPYLLGLLTHSHKKSI 267 (454)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~~L~~~~~~~v 267 (454)
...++ ....+.+..+.-+.....+++.+.-++...|..+...+..........++.... .+..-.++.+. +--+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 55544 345566777788888888888888888888888888887654433333433222 34466677777 8889
Q ss_pred HHHHHHHHHHHhcC--CHHH-HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897 268 KKEACWTISNITAG--NRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 268 ~~~a~~~L~nl~~~--~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 324 (454)
+..+...++.+..+ +... .+++.+..-+..++.+|.++...++.+|.....-+..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999998864 2222 233334567889999999999999999999888777654
No 228
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.96 E-value=0.15 Score=34.70 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 13 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 13 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
.+.|++++.++.+. +.-...+.+.++++.++++..+.+...+|-.+..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 57899999999887 45556666779999999999877668999999999999998 777777766655
No 229
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=4.8 Score=40.68 Aligned_cols=390 Identities=13% Similarity=0.155 Sum_probs=193.0
Q ss_pred CHHHHHHHHHHHHHHhccC-C--CCcHHHHHHc--CCH-HHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 012897 9 DSSLQLEATTQFRKLLSIE-R--SPPIEEVIQS--GVV-PRFVEFLMREDYPQLQFEAAWALTNIAS-GTSENTKVVIDH 81 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~-~--~~~~~~~~~~--~~l-~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~ 81 (454)
|+.+|..|+.++.+.++.+ . .+....+.+. ..+ ..++.++-+.. ..++..-..+|+-+.. +.|+....
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~DFP~kWpt---- 126 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRDFPDKWPT---- 126 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccccchhhHH----
Confidence 7899999999999998732 1 1111122221 122 23455666666 6899999999999886 33444433
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHH------HHhcC-ChHHHHHHhch--------hhhhh-----
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVA-GDSPRCRDL------VLSQG-ALIPLLAQLNE--------RAKLS----- 140 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~------~~~~~-~i~~l~~~l~~--------~~~~~----- 140 (454)
.++.|+.-+++.+..+....+.+-..+- +..+.+|.. ....+ .-.++..++.. ..+..
T Consensus 127 -Ll~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~l 205 (960)
T KOG1992|consen 127 -LLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNIL 205 (960)
T ss_pred -HHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 4677777777766555554444444343 222222211 11111 11233333321 11122
Q ss_pred --HHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCCC-------------hhHHHHHHHHHHHhccCChHHHHHH
Q 012897 141 --MLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSND-------------EEVLTDACWALSYLSDGTNDKIQAV 204 (454)
Q Consensus 141 --~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~-------------~~v~~~a~~~L~~l~~~~~~~~~~~ 204 (454)
+..-.+.....|...+ +.--.......++...+++..++ ..++...|..+.-.+...++..+.+
T Consensus 206 f~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~f 285 (960)
T KOG1992|consen 206 FGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPF 285 (960)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 2222333444444433 22222234566777777776332 2345566666666666655555544
Q ss_pred HHhCcHHHHHHhcCCCCCc-----chhhHHHHHhHhhccCccchh---------------------------hhhccCCh
Q 012897 205 IEAGVCPRLVELLGHPSPS-----VLIPALRTVGNIVTGDDFQTQ---------------------------CIITYGAL 252 (454)
Q Consensus 205 ~~~~~i~~L~~ll~~~~~~-----v~~~a~~~L~~l~~~~~~~~~---------------------------~~~~~~~l 252 (454)
+. +++.....++.+..++ +...|+..|.++++... +.. .+.+..-+
T Consensus 286 l~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~-y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pl 363 (960)
T KOG1992|consen 286 LP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPH-YAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPL 363 (960)
T ss_pred HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhh-hHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHH
Confidence 44 4555555566543332 34456666666664221 211 22333344
Q ss_pred HHHHHhhcCCcchhH-HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh---hcchhhHHHHHHHHHHhcCCCCHHH
Q 012897 253 PYLLGLLTHSHKKSI-KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ---NAEFDIKKEAAWAISNATSGGTHEQ 328 (454)
Q Consensus 253 ~~L~~~L~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (454)
..+-.-|+.. +-+. |+.|+-.+.-++...+.....++.. .+..+++-.. +.++.-+..+......++..+....
T Consensus 364 eYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~ 441 (960)
T KOG1992|consen 364 EYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK 441 (960)
T ss_pred HHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence 5555555544 4444 4556677777776544433333321 2222332222 2355566667777776666432110
Q ss_pred -----------HHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHH
Q 012897 329 -----------IKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIE 397 (454)
Q Consensus 329 -----------~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 397 (454)
...+.....++.|..-=-...|-++..+++-+..+=+ . .+ ...+ ...++.+.
T Consensus 442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~---q----------l~--~~~l--m~~~p~li 504 (960)
T KOG1992|consen 442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRN---Q----------LG--KEHL--MALLPRLI 504 (960)
T ss_pred cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecc---c----------CC--hHHH--HHHHHHHH
Confidence 0011111111111110012333344333322221110 0 00 1111 23467778
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 398 NLQSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 398 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
+.+..+..-|..+|...+++++.-++++
T Consensus 505 ~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 505 RFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HhccCcchHHHHHHHHHHHhccccccCc
Confidence 8889999999999999999999887763
No 230
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.63 Score=45.68 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=100.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIAS-GTS----ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 114 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 114 (454)
.=|.|.+-|+-.+ ..+|..|+..+.++.- .++ +..+.+++.. ...+.++|.++.+.+|..|+..+..+.+.
T Consensus 175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~-- 250 (1005)
T KOG1949|consen 175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK-- 250 (1005)
T ss_pred HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH--
Confidence 3445666778888 7999999999999875 222 3345555543 67889999999999999998887776531
Q ss_pred hhHHHHHhcCChH----HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHH
Q 012897 115 RCRDLVLSQGALI----PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWAL 190 (454)
Q Consensus 115 ~~~~~~~~~~~i~----~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L 190 (454)
+ ..++-..++. .+..-+..+...+|+......|..+..++ ........++|.+-..+.+....||.++...|
T Consensus 251 -f-We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 251 -F-WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred -H-HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence 1 1122222222 23333334556688888888888888764 23334456778888888888999999888888
Q ss_pred HHhc
Q 012897 191 SYLS 194 (454)
Q Consensus 191 ~~l~ 194 (454)
..+-
T Consensus 327 l~ik 330 (1005)
T KOG1949|consen 327 LKIK 330 (1005)
T ss_pred HHHH
Confidence 7664
No 231
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.83 E-value=0.25 Score=38.67 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=71.0
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~ 367 (454)
.+..+..-+.++++.++..|+..|-.+..++.......+.+.+++..|+.+++. .++.|+..++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455677778889999999999999999998888888888888999999999863 56789999999988887654
Q ss_pred hhhhhccCCcccccHHHHHHHHhccH
Q 012897 368 EAEKNMGTATADVNQYAQLVEEAEGL 393 (454)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~g~~ 393 (454)
.... ...+....++..|.+
T Consensus 119 ~~~p-------~~~~~Y~~Lk~~G~i 137 (139)
T cd03567 119 PHEP-------KIKEAYDMLKKQGII 137 (139)
T ss_pred cccc-------hHHHHHHHHHHCCCc
Confidence 4322 233345556656644
No 232
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.25 Score=47.13 Aligned_cols=152 Identities=22% Similarity=0.321 Sum_probs=98.5
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 012897 46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQG 124 (454)
Q Consensus 46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 124 (454)
+++.+.+ +-+|...+..+..--.+.. +.|++..++.. .++.++++|+.|+.+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 5555555444433222111 23567777776 6678899999999999998866543
Q ss_pred ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHH
Q 012897 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAV 204 (454)
Q Consensus 125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 204 (454)
.+...+++|.++.+.-++...+.+|.-.|.+... .-++..|-.+..+.++-+|..|+-+++-+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4667788887777888999888899888876421 2345566677788888899999988887764433322222
Q ss_pred HHhCcHHHHHHhcCCCC
Q 012897 205 IEAGVCPRLVELLGHPS 221 (454)
Q Consensus 205 ~~~~~i~~L~~ll~~~~ 221 (454)
+. ++...+.+.+.+..
T Consensus 660 v~-~I~k~f~~vI~~Kh 675 (926)
T COG5116 660 VK-RIIKKFNRVIVDKH 675 (926)
T ss_pred HH-HHHHHHHHHHhhhh
Confidence 22 45556666665443
No 233
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.76 E-value=5.1 Score=41.34 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=124.8
Q ss_pred HHHcCCHHHHHHhhcCCCC----hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC----CCC----HHHHHHH
Q 012897 35 VIQSGVVPRFVEFLMREDY----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA----SPS----DDVREQA 102 (454)
Q Consensus 35 ~~~~~~l~~L~~lL~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~----~~~----~~v~~~a 102 (454)
+.+.|++..|++++.+-.+ ..+....+..|...+. .+.+|+.+++.|+++.|+..+. .+. ..+.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456888888888876431 3455556666666666 7999999999999999999774 333 6777777
Q ss_pred HHHHHHhhCCChhhHHHH----H--------hcCChHHHHHHhchh---hhhhHHHHHHHHHHhhcCCCCCCChhhhhch
Q 012897 103 VWALGNVAGDSPRCRDLV----L--------SQGALIPLLAQLNER---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPA 167 (454)
Q Consensus 103 ~~~L~~l~~~~~~~~~~~----~--------~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 167 (454)
+.++..+........... . ....+..+++.+... .++.+....+.+|..|+.............+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 777776653222110000 0 111255666666432 3578888999999999987533222222222
Q ss_pred HHHHHHhhc-----CCChhHHHHHHHHHHHhccC------ChHHHHHHHHhCcHHHHHHhcCCCCCc-------------
Q 012897 168 LPALAQLVH-----SNDEEVLTDACWALSYLSDG------TNDKIQAVIEAGVCPRLVELLGHPSPS------------- 223 (454)
Q Consensus 168 l~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~------~~~~~~~~~~~~~i~~L~~ll~~~~~~------------- 223 (454)
-|.+ ++=. +.+.. ..+.+++.++.. .....+.+++.|++...+..+...-|.
T Consensus 272 ~p~l-~f~~~D~~~~~~~~---~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 272 KPYL-DFDKFDEEHSPDEQ---FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHhc-ChhhcccccCchHH---HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 2222 2111 11222 234555555432 134556688889998888887543222
Q ss_pred ---chhhHHHHHhHhhccCccchhhhhccCChHHHH
Q 012897 224 ---VLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 256 (454)
Q Consensus 224 ---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 256 (454)
-...++..|.-++.+.... +..+..++++.+-
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH 382 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLH 382 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHH
Confidence 2234667777777665432 3345555554333
No 234
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.75 E-value=2.2 Score=39.85 Aligned_cols=214 Identities=12% Similarity=0.132 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-----CcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-----PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL 255 (454)
Q Consensus 181 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 255 (454)
+++..++..+...+....+....++. ..+..+.++|..-. ..+...++..|+.++... .....+...+.+..+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~-~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESP-HHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSH-HHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcch-hHHHHhCCHHHHHHH
Confidence 45666677666666554444443333 45555666664422 234455677777665432 121111111122211
Q ss_pred -----HHh----------------------hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh---hc
Q 012897 256 -----LGL----------------------LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ---NA 305 (454)
Q Consensus 256 -----~~~----------------------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~ 305 (454)
++. +.......-|..|+..+..++...+.....++. +.+..++.-.. ..
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~ 267 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSN 267 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcc
Confidence 222 222212345677888888888654443333321 12332322211 23
Q ss_pred chhhHHHHHHHHHHhcCCCCH-----------HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhcc
Q 012897 306 EFDIKKEAAWAISNATSGGTH-----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMG 374 (454)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~~~~-----------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 374 (454)
++.-+..|+..++.++..+.. -....+....+++-|. --.+..|-++..|++.+..+-..-+.
T Consensus 268 ~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----- 341 (370)
T PF08506_consen 268 NWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----- 341 (370)
T ss_dssp -HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-----
T ss_pred cHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-----
Confidence 678888999999999886521 0234555666777776 22245677787788777776443221
Q ss_pred CCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 012897 375 TATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415 (454)
Q Consensus 375 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 415 (454)
..+ .+.++.+.+.+.+++.-|+.+|...|
T Consensus 342 ----------~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 ----------EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ----------HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ----------HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222 34578888899999999999988754
No 235
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.74 E-value=2.8 Score=38.62 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=110.2
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhc-cCccchhhhhcc-C-ChHHHHHhhcCCc----c--------hhHHHHHHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVT-GDDFQTQCIITY-G-ALPYLLGLLTHSH----K--------KSIKKEACWT 274 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~~L~~~~----~--------~~v~~~a~~~ 274 (454)
+..+...|......+...+++.|..++. ........+... . -.+.+..++.... . +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999998 444445545432 1 2234444542210 1 2788888777
Q ss_pred HHHHhc-CCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHh-cCCC--CHHHHHHHHHcCCcHHHhhccCCCC
Q 012897 275 ISNITA-GNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNA-TSGG--THEQIKYLVREGCIKPLCDLFVCPD 349 (454)
Q Consensus 275 L~nl~~-~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l-~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~ 349 (454)
+..+.. +++..+..++ +.+.+..+.+-+..+++++....+.++..- .... .......+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666655 6777777777 566788888888888899999999999854 3322 2233344556678899999888877
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 012897 350 P----RIVTVCLEGLENILKV 366 (454)
Q Consensus 350 ~----~v~~~al~~L~~l~~~ 366 (454)
+ .+...+-..|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 7888888888888754
No 236
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.73 E-value=2.2 Score=47.90 Aligned_cols=278 Identities=9% Similarity=0.062 Sum_probs=150.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDS---PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 163 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (454)
++..-.+++..++..|+..|..++..- .+....-.....+.++..++....+.++++.++.++.++.......-..-
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSG 1221 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSG 1221 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 333334456778888888888877311 11111122334577788777677788999999999999876542111112
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH----HHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhcc
Q 012897 164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 238 (454)
...++..+.......++.+...+..++..++...-.... ..+ ..++..+..+.... +..+-..|+..|++++..
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 233444444444466788888888888776643111000 000 13344444444333 356666777777655211
Q ss_pred C----c-----------------------cchhhhhc-----cCChHHH---HHhhcCCcchhHHHHHHHHHHHHhc---
Q 012897 239 D----D-----------------------FQTQCIIT-----YGALPYL---LGLLTHSHKKSIKKEACWTISNITA--- 280 (454)
Q Consensus 239 ~----~-----------------------~~~~~~~~-----~~~l~~L---~~~L~~~~~~~v~~~a~~~L~nl~~--- 280 (454)
- . .....+.+ ...++.| ..+..++ .++||..|+.+|-.+..
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence 0 0 00000000 1123333 3334555 88999999999877764
Q ss_pred --CCHHHHHHHHhCCChHHHHHHhhhc-----------------------chhhHHHHHHHHHHhcCCCCHHHHHHHH--
Q 012897 281 --GNRDQIQAVIDAGLVGPLVNLLQNA-----------------------EFDIKKEAAWAISNATSGGTHEQIKYLV-- 333 (454)
Q Consensus 281 --~~~~~~~~l~~~~~i~~L~~ll~~~-----------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~-- 333 (454)
-+++.+..+.. +++-+++..++.. +..+...+..+|..+..--. .+...+.
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~ 1457 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPL 1457 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 13444444443 4555555555321 00123334444444433111 1111111
Q ss_pred HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 334 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
-.+++..|..++..++..+......||.+++....
T Consensus 1458 L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1458 LKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 13567777778888888999999999999986544
No 237
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.68 E-value=0.78 Score=45.30 Aligned_cols=208 Identities=14% Similarity=0.104 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC
Q 012897 142 LRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS 221 (454)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 221 (454)
+..-+..|..+... .........++|.++..+.+ ...+-..+-.+..++...+ ...+...+++.|...++..+
T Consensus 290 Ks~Flk~Ls~~ip~--fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 290 KSSFLKGLSKLIPT--FPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHHHHhccCC
Confidence 33334444444433 23334446677777766632 2222223333333333322 12233466777777776422
Q ss_pred CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897 222 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 301 (454)
Q Consensus 222 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 301 (454)
-....+.++-++-.-.......-+...+++.|...+++. +..++..++..+..++..-+ ...++.-++|.+..+
T Consensus 363 --~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l 436 (700)
T KOG2137|consen 363 --PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNL 436 (700)
T ss_pred --cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcc
Confidence 122222233333110111112234457888999999999 99999999999998876322 133445577777776
Q ss_pred h-hhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 302 L-QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 302 l-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
. +..+..++.+++-++..++...+. ... -+.+..+..+.+..+|.+....+.+..+++-..
T Consensus 437 ~~~tt~~~vkvn~L~c~~~l~q~lD~--~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~ 498 (700)
T KOG2137|consen 437 AFKTTNLYVKVNVLPCLAGLIQRLDK--AAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALII 498 (700)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHH--HHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc
Confidence 4 345889999999999999843221 111 124666777888899999888888888776543
No 238
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.67 E-value=2.3 Score=39.15 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=116.8
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHh-CCC-hHHHHHHhhhc-----c--------hhhHHHHHH
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVID-AGL-VGPLVNLLQNA-----E--------FDIKKEAAW 315 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~~-----~--------~~v~~~a~~ 315 (454)
++.+...|.+. ...+...+...|..++. ......+.+.. -++ .+.+-.++... . +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 78899999888 77788899999999998 66666666663 222 33445554321 1 289999999
Q ss_pred HHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHH
Q 012897 316 AISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLE 394 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 394 (454)
.+..+...+++.....+.+ .+.+..+..-+..++++++...+.+|..-+-.+....+. .+..+-....+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~---------~K~~~fn~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS---------TKCKLFNEWTLS 207 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh---------hhhhhcCHHHHH
Confidence 9989888888777766665 577899999999988999999999999654444433221 233344456788
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHHhcC
Q 012897 395 KIENLQSHDNN----EIYEKAVKILETYWL 420 (454)
Q Consensus 395 ~l~~l~~~~~~----~v~~~a~~~l~~~~~ 420 (454)
+|..+-..+++ .+.+.+...+..+..
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 88888888887 899999998888775
No 239
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.56 E-value=0.87 Score=37.50 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=89.8
Q ss_pred cchhhHHHHHhHhhccCccc-hh----hhh-c-----c-CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQ-TQ----CII-T-----Y-GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~-~~----~~~-~-----~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
++|..|+.+|..++...+.. .. .++ + . .-...+.-++.++ ++++|..|+.++..+..++.......-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 36778888888888762311 10 111 1 1 2234445555666 999999999999999887654433322
Q ss_pred hCC-------------------ChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897 291 DAG-------------------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 350 (454)
Q Consensus 291 ~~~-------------------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~ 350 (454)
+.. +-..|+..++.+ +..+....+.++..+....+....+.=.-..++..+..++.+.|+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 111 122334444443 677888889999988887654433221112345666667778999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012897 351 RIVTVCLEGLENILKV 366 (454)
Q Consensus 351 ~v~~~al~~L~~l~~~ 366 (454)
.++..++.++..++..
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 9999999999888754
No 240
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.21 Score=43.94 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=97.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
.+...+..|.+.+.+....++..+..|+...++.....+.. .+..+++-+ +.....|-+.|+.++..+..........
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888889999999887666543333322 345556666 6667789999999999888764222222
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
...+.+-.|..--..++.-++..+-.+|..+..+-... .+++.|+..+++.++.++..++.+..++..
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 22222222222223345668899999998887654433 457778888999999999999887766653
No 241
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.48 E-value=1.2 Score=41.56 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=86.5
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHH
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALS 191 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~ 191 (454)
..+.+.+..+.+-+-+..+...+-+..|+..+..|+.... .....-+...+..++. +.+..-+..|+..++
T Consensus 204 ~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 204 EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 4455555555555555333345677888899999986421 1111112223334443 346677888888888
Q ss_pred HhccCChH------------HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh
Q 012897 192 YLSDGTND------------KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL 259 (454)
Q Consensus 192 ~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 259 (454)
.++..... ....++...++|.|. --.+..+-++..|++.+..+-..-+. +.+ .++++.++..|
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L 355 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHL 355 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHT
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHh
Confidence 88754321 234455556666665 11234456788889888887654331 112 25889999999
Q ss_pred cCCcchhHHHHHHHHH
Q 012897 260 THSHKKSIKKEACWTI 275 (454)
Q Consensus 260 ~~~~~~~v~~~a~~~L 275 (454)
.++ +.-|+..|+.++
T Consensus 356 ~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSS-SYVVHTYAAIAI 370 (370)
T ss_dssp TSS--HHHHHHHHHHH
T ss_pred CCC-CcchhhhhhhhC
Confidence 999 888998888765
No 242
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.46 E-value=0.36 Score=40.21 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=76.2
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHH----------------HHcCCHHHHHHhhcCC-----CChhHHHHHHH
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEV----------------IQSGVVPRFVEFLMRE-----DYPQLQFEAAW 62 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~l~~L~~lL~~~-----~~~~v~~~a~~ 62 (454)
.+.+.+....-.++-.|.|++... .....+ .+...+..|++++..+ +..+-....+.
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~ 80 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSD--SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS 80 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccch--HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence 344444455556666777776543 222212 1234577787777661 22455678889
Q ss_pred HHHHhcCCCchhhHHHHhC--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897 63 ALTNIASGTSENTKVVIDH--GA--VPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 63 ~L~~l~~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
+|.|++. .++.|..+.+. +. +..|+.++++.+..-|..++.+|.|+|.+....
T Consensus 81 vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 81 VLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred HHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 9999999 89999999875 34 788888999888888888999999999776644
No 243
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.37 E-value=1.1 Score=42.70 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=107.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
+.+.+++...+..|++.+..+... ......+++...+..|.+++.++.. .++...++.++..+.....-..+. +
T Consensus 90 e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~-~ 166 (713)
T KOG2999|consen 90 EILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES-V 166 (713)
T ss_pred HHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee-c
Confidence 456778888888888888888765 5668889999999999999998761 355666666666665432211111 1
Q ss_pred hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 80 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 80 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
...+|.....+.. ..+..+-..|+..+-++...++..+..+.+.-.+..++..+ +..+..++..|...+..+....+
T Consensus 167 ~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 167 SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHHHhhCC
Confidence 2233444444442 24456677788888888877777788888888899999999 77778888888888888876654
Q ss_pred C
Q 012897 158 Q 158 (454)
Q Consensus 158 ~ 158 (454)
.
T Consensus 246 ~ 246 (713)
T KOG2999|consen 246 D 246 (713)
T ss_pred h
Confidence 3
No 244
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.37 E-value=1.7 Score=40.65 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=90.4
Q ss_pred HHHHHHHHhc--cCCCCcHHHHHH-cCCHHHHHHhhcCCCC--hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 16 ATTQFRKLLS--IERSPPIEEVIQ-SGVVPRFVEFLMREDY--PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 16 a~~~L~~l~~--~~~~~~~~~~~~-~~~l~~L~~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
-++.+.+++. .......+.+++ ..+...|...+++... +.+-..|+.++..+....|.....+.+.|+++.+++.
T Consensus 80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~ 159 (379)
T PF06025_consen 80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA 159 (379)
T ss_pred HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence 3444444455 222334555666 5667777788887642 7888999999999999899999999999999999998
Q ss_pred hC-C---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch
Q 012897 91 LA-S---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 135 (454)
Q Consensus 91 L~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 135 (454)
+. . ++.++....-.+|+.+|-+.. ..+.+.+.+.+..+++++.+
T Consensus 160 i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 160 ITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCC
Confidence 88 4 678888888889999986654 55777778999999998844
No 245
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.27 Score=43.21 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=102.5
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
...+...+..|.+.+......++..+..++...++.....+. .++-.+++-+++....|...|+.+++.+...-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888899999999999999998777655555554 5666677777888889999999999998864332222
Q ss_pred hhhccCChHHHHHhh-c---CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 245 CIITYGALPYLLGLL-T---HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L-~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
. -+..++..| . .+ +..++..|-.+|..+..+-.. ..+++.|+..+....+.++..++..+.+.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~d-nrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQD-NRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H-----HHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2 223333333 2 23 456899999999988864222 12567788888888899998888887776
Q ss_pred cCCC
Q 012897 321 TSGG 324 (454)
Q Consensus 321 ~~~~ 324 (454)
....
T Consensus 233 v~rl 236 (334)
T KOG2933|consen 233 VIRL 236 (334)
T ss_pred ceec
Confidence 5543
No 246
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.31 E-value=0.5 Score=44.90 Aligned_cols=226 Identities=15% Similarity=0.099 Sum_probs=128.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|+..+.|+|+.-|......|+.+-... ...+..+...+...+.+.+.......-....++.++.+..+..-..+.-..
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~ 215 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK 215 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence 356789999999999999999887763 445566666678888888876654666778888999988753211111111
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.=....++.+.+.+. .........++..++..++.....+ +..+++.= ...+..-....+.-+..+...-+..
T Consensus 216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~ 289 (409)
T PF01603_consen 216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE 289 (409)
T ss_dssp HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence 112244444555433 3445555666666665555433332 33334333 2233333333444444554432211
Q ss_pred C-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCC-----CCCcchhhHHH
Q 012897 160 P-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGH-----PSPSVLIPALR 230 (454)
Q Consensus 160 ~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~-----~~~~v~~~a~~ 230 (454)
. ......+...+..++.+.+..|.+.|+..+.| + ....++.. .+++.+..-+.. =+..++..|..
T Consensus 290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 22335567788888999999998888876543 2 12223322 256666666533 15678888888
Q ss_pred HHhHhhccCc
Q 012897 231 TVGNIVTGDD 240 (454)
Q Consensus 231 ~L~~l~~~~~ 240 (454)
++..+...++
T Consensus 364 vl~~l~~~d~ 373 (409)
T PF01603_consen 364 VLKILMEMDP 373 (409)
T ss_dssp HHHHHHTTSH
T ss_pred HHHHHHHhCH
Confidence 8888876555
No 247
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.28 E-value=2 Score=40.88 Aligned_cols=261 Identities=12% Similarity=0.100 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC
Q 012897 14 LEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 93 (454)
Q Consensus 14 ~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 93 (454)
..+...|..+............++...+..|+.++.+++ ++-|.....+|..+.......|..+.. .+...+..++..
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e 185 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYE 185 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcC
Confidence 344555666665532222333556667889999999999 999999999999988755566655543 445666666654
Q ss_pred -CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHH
Q 012897 94 -PSDDVREQAVWALGNVAGDSP-RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPAL 171 (454)
Q Consensus 94 -~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l 171 (454)
....-...++.+++.+..+-. +.+..-.. -....++.+.....-.........++..++..++ .....++..+
T Consensus 186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~l 260 (409)
T PF01603_consen 186 TERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGL 260 (409)
T ss_dssp TS--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHH
Confidence 344455556777777764321 12111000 0011122222111122223333444444443221 1112233333
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc-
Q 012897 172 AQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY- 249 (454)
Q Consensus 172 ~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~- 249 (454)
++.=-..++.-..-.+.-+..+....+ .....+ ...++..+..++.+++..|.+.|+..+.|=- .. .++..
T Consensus 261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~~-----~~-~li~~~ 333 (409)
T PF01603_consen 261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNEY-----FL-SLISQN 333 (409)
T ss_dssp HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH-----HH-HHHHCT
T ss_pred HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH-----HH-HHHHhC
Confidence 333334454444445555555554332 222222 2367778888889999999999987764421 11 12221
Q ss_pred --CChHHHHHhhcC----CcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897 250 --GALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQA 288 (454)
Q Consensus 250 --~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 288 (454)
.+++.+...+.. .=+..+|..|..++..+..-+++....
T Consensus 334 ~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 334 SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 356666666533 115679999999999888866665444
No 248
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.12 E-value=1.3 Score=43.78 Aligned_cols=230 Identities=16% Similarity=0.157 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
|+..+-.-++.|-+++..- + ..+....++|.|+..+.+.. ..-..+-.+..++...+ ...+..-.++.|.
T Consensus 286 dn~qKs~Flk~Ls~~ip~f--p--~rv~~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~ 355 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTF--P--ARVLFQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLS---QNEFGPKMLPALK 355 (700)
T ss_pred CcHHHHHHHHHHHHhhccC--C--HHHHHHhhhhHHHHHhcccc---ccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence 4555555555565555442 1 22344567777777774432 11122222222232111 1111223566666
Q ss_pred HhhCCC-CHHHHHHHHHHHHHh---hCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhh
Q 012897 89 KLLASP-SDDVREQAVWALGNV---AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQV 164 (454)
Q Consensus 89 ~lL~~~-~~~v~~~a~~~L~~l---~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 164 (454)
..++.. +.++. +.++-++ ....+ ..-+...+++.|...+ ++.+..++..++..+..++..-+ -..+.
T Consensus 356 pi~~~~~~~~~~---l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD--~~~vk 426 (700)
T KOG2137|consen 356 PIYSASDPKQAL---LFILENMDLLKEKTP---PEEVKEKILPLLYRSL-EDSDVQIQELALQILPTVAESID--VPFVK 426 (700)
T ss_pred HHhccCCcccch---hhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhcc--HHHHH
Confidence 666642 22222 2222222 11111 1111222455555555 66778888888888888876532 22233
Q ss_pred hchHHHHHHh-hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch
Q 012897 165 RPALPALAQL-VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 165 ~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 243 (454)
..++|.+-.+ +.+.+..++.+++-|+..++.. .+...-.+.+..+....+..++.+....+.+..++.......
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g- 501 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG- 501 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence 5677777665 4567889999999999998832 222222234555666667788889888888888887654433
Q ss_pred hhhhccCChHHHHHhhcCC
Q 012897 244 QCIITYGALPYLLGLLTHS 262 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~ 262 (454)
..++...++|.++.+...+
T Consensus 502 ~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 502 VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred eeeehhhhhhhhhhhhhcc
Confidence 3466668888888888766
No 249
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.12 E-value=1.1 Score=44.16 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=102.7
Q ss_pred CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 012897 40 VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 40 ~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
.-|.+.+...+. +++.++..|.-+|..+..-+.+.... -+|.++..+. +++|.+|.+++-.++.+.-.-..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 344444444441 23899999999999887644443322 3788999887 69999999999999887532211
Q ss_pred hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
..+. ....|.+.| .+.+..|++.++.++..|.... .....|-++.+..+|.++|..+..-|-..+..++.
T Consensus 968 ~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 1111 245566677 6778899999999999987543 33457888999999999999998888778877775
Q ss_pred CCh
Q 012897 196 GTN 198 (454)
Q Consensus 196 ~~~ 198 (454)
.+.
T Consensus 1038 KdN 1040 (1128)
T COG5098 1038 KDN 1040 (1128)
T ss_pred ccc
Confidence 543
No 250
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.02 E-value=4.9 Score=41.41 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHh
Q 012897 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 174 (454)
Q Consensus 95 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l 174 (454)
.+.++..+.-+++++|--.....+. .+|.+++-|..+....++.+...+++.+|... -.+....+|.+...
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 3578889999999999544433332 48899999988888888888888888888642 23446789999999
Q ss_pred hcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897 175 VHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236 (454)
Q Consensus 175 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 236 (454)
|.++++-+++.++-.|.++....--. .+..++-.++.-+-+.+++++.-|=.+++.+.
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999987543211 11123333444444566677777766666665
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.97 E-value=0.37 Score=38.09 Aligned_cols=75 Identities=8% Similarity=0.028 Sum_probs=64.3
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~ 368 (454)
.+..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..++.. .++.|+..++..+........
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 456677778888999999999999999999988888888888999999999988 788999999998888865443
No 252
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=93.97 E-value=0.96 Score=51.69 Aligned_cols=268 Identities=14% Similarity=0.163 Sum_probs=153.1
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCC-----CcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERS-----PPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
+..+|++++..+...+..+...... +..-. +....+..+..+-....++.++......+. +.......
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhc
Confidence 4567899999998887777655311 11111 112233344443333333676666555443 23334455
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
+.+.+..+...+..+...++..+...+++++..+|...-.-+....+..+-++. .+.-..+...+..-+..+....+..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence 556677777788888899999999999999987764322222211121111111 1111111111111111111110111
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 238 (454)
........+..++..+.+.+..+...+..++..+|...........+ ..++.+.+.+.+ .+..-+.+++++++++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 11222445566777777888888888999999998765544444445 556666666644 5667788999999999875
Q ss_pred Cccchhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897 239 DDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 239 ~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
.........+ ..++..+...++......+|..+...++++...
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 5433322222 346677777777776777889999888877653
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.96 E-value=0.33 Score=38.31 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=62.0
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL 415 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l 415 (454)
++..|..-+.++++.++..++..|..+++.+... |...+...+.+..|.++... .++.|++++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 5777888888999999999999999999977653 67777778888999998777 8899999999999
Q ss_pred HHhcCc
Q 012897 416 ETYWLE 421 (454)
Q Consensus 416 ~~~~~~ 421 (454)
..+-..
T Consensus 106 ~~W~~~ 111 (144)
T cd03568 106 KQWADE 111 (144)
T ss_pred HHHHHH
Confidence 987643
No 254
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.86 E-value=0.54 Score=37.09 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=63.1
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~ 368 (454)
.+..|..-+.++++.++..|+..|-.+..++.......+.+.+++..|..++. ..++.|+..++..+........
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 46667777888999999999999999999887777777888899999999887 5677899999999988876543
No 255
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.50 E-value=0.32 Score=34.99 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAV 289 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 289 (454)
+...+..+.++.+.+|..++..|..+..... ....-..+++..++..++++ ++-+--.|..++..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence 4556777889999999999999999998655 11222346788889999999 999999999999999975554
Q ss_pred HhCCChHHHHHHhhh
Q 012897 290 IDAGLVGPLVNLLQN 304 (454)
Q Consensus 290 ~~~~~i~~L~~ll~~ 304 (454)
.+++.|++...+
T Consensus 77 ---~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ---EVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHhC
Confidence 245555555443
No 256
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.49 E-value=7 Score=36.99 Aligned_cols=191 Identities=17% Similarity=0.209 Sum_probs=121.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHHhch------hhhhhHHHHHHHHHHhhcCCC
Q 012897 86 IFVKLLASPSDDVREQAVWALGNVAGDSP---RCRDLVLSQGALIPLLAQLNE------RAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~ 156 (454)
.+..++...+++-|..++.....++...+ ..++.+++.-+.+.+-+++.. .++.-.+.-++..|..+|+.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35667777888888889999999885443 345667777777777777742 234445666778888999887
Q ss_pred CCCChhhhhchHHHHHHhhcCC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchh-hH
Q 012897 157 PQPPFDQVRPALPALAQLVHSN-DEE------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLI-PA 228 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~-~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~-~a 228 (454)
+.......-.-+|.+..++... +++ +...+-.||..++...... ..++..|.++.+.++-.-++...-. -+
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 6555555567788888888643 222 6788888999988875544 6688889999999876554443322 23
Q ss_pred HHHHhHhhccCccch---hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 229 LRTVGNIVTGDDFQT---QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 229 ~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+.++--...+..... ..+. ..+..+..=+... +...+.+.|..|..+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHh
Confidence 333333333222111 1111 1233333334444 55678888888886554
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.36 E-value=0.51 Score=37.21 Aligned_cols=73 Identities=18% Similarity=0.330 Sum_probs=61.0
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKIL 415 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 415 (454)
++..|..-+.++++.++..++..|..+++.+... |...+...+.++.|.++.. ..++.|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 5778888888999999999999999999875432 6777778888888988865 68889999999999
Q ss_pred HHhcCc
Q 012897 416 ETYWLE 421 (454)
Q Consensus 416 ~~~~~~ 421 (454)
..+...
T Consensus 110 ~~W~~~ 115 (142)
T cd03569 110 QAWALA 115 (142)
T ss_pred HHHHHH
Confidence 987753
No 258
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.36 E-value=0.83 Score=38.06 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=71.4
Q ss_pred cCCCCCcchhhHHHHHhHhhccCccchhhhh----------------ccCChHHHHHhhcCC-----cchhHHHHHHHHH
Q 012897 217 LGHPSPSVLIPALRTVGNIVTGDDFQTQCII----------------TYGALPYLLGLLTHS-----HKKSIKKEACWTI 275 (454)
Q Consensus 217 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~l~~L~~~L~~~-----~~~~v~~~a~~~L 275 (454)
+.+++......++..|+|+++... ....++ +...+..|+..+..+ ....-....+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 344555666777788888887443 222222 223567777777551 1234556788899
Q ss_pred HHHhcCCHHHHHHHHh--CCC--hHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 276 SNITAGNRDQIQAVID--AGL--VGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
.|++.. ++.++.+++ .+. +..|+.++++.+..-|.-++.+|.|++..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 999865 677777774 334 78888888888888888999999999984
No 259
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.19 E-value=0.6 Score=36.57 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=59.4
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK 410 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 410 (454)
++..|..-++++++.++..++..|..+++.+... |...+...+++..+.++... .++.|+++
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k 106 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK 106 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 5777888889999999999999999999876543 66777778888888888743 57899999
Q ss_pred HHHHHHHhcC
Q 012897 411 AVKILETYWL 420 (454)
Q Consensus 411 a~~~l~~~~~ 420 (454)
...++..+-.
T Consensus 107 il~li~~W~~ 116 (139)
T cd03567 107 IIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 260
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.18 E-value=7.6 Score=36.50 Aligned_cols=307 Identities=15% Similarity=0.128 Sum_probs=158.3
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCC-cHHHHHHcCCHHHHHHhhc----C------CCChhHHHHHHHHHHHhcCCCch
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSP-PIEEVIQSGVVPRFVEFLM----R------EDYPQLQFEAAWALTNIASGTSE 73 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~l~~L~~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~ 73 (454)
|...+.+-|..|...|.+.+...... ....+.+ -++.+++.++ + +.+..+..+|+++|+.+.. +++
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~ 78 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPE 78 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHH
Confidence 56678888999999999988765322 2222222 2455555433 2 1126788999999999987 555
Q ss_pred hhHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---h-hhhhhHHHH
Q 012897 74 NTKVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---E-RAKLSMLRN 144 (454)
Q Consensus 74 ~~~~~~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~ 144 (454)
....+-+.- ++...+..+.+ .+..+...++|+|..-- .++ .++....+..++..+. + -++..+...
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-f~~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-FSP----KIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCC----cccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 444443321 34555556654 34667777777776642 222 2233333444554442 1 345678888
Q ss_pred HHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh---HHHHH---HHHh----C-----c
Q 012897 145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN---DKIQA---VIEA----G-----V 209 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~---~~~~----~-----~ 209 (454)
.+.++.++....+..-......-+|.++..+-+....++..|...+..+...-+ ..... ..+. + +
T Consensus 154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~ 233 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLY 233 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHH
Confidence 888888888775444333334467777777667777777776666555432111 11111 1111 1 2
Q ss_pred HHHHHHhcCCCCCcchhhHHHH-HhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc---CCHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRT-VGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQ 285 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~~~~ 285 (454)
.+.+..++.+++......-+|. +..+. +.......-.-+..+...-..+.++ ++.+|..|..+=..+.. .++..
T Consensus 234 ~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~ 311 (372)
T PF12231_consen 234 CERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELT 311 (372)
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccc
Confidence 2335555555332222222222 22222 2221000011123445555566777 88899888766554443 22211
Q ss_pred HHHHHhCCChHHHHHHhhhc-ch----hhHHHHHHHHHHhcC
Q 012897 286 IQAVIDAGLVGPLVNLLQNA-EF----DIKKEAAWAISNATS 322 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~-~~----~v~~~a~~aL~~l~~ 322 (454)
....++- +..++...++.. .. +++..+...++++..
T Consensus 312 ~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 312 SPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred cHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 1112211 122233333332 23 666777777776654
No 261
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.06 E-value=0.92 Score=36.67 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=29.6
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHH
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQI 286 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~ 286 (454)
..++.|+.+|+++.+..+|.++..+++.+.+-+|...
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~ 46 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH 46 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH
Confidence 4577888999888779999999999999987544433
No 262
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=93.05 E-value=5.9 Score=34.94 Aligned_cols=213 Identities=19% Similarity=0.121 Sum_probs=122.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCC---CcHHHHHH------c-CCHHHH----HHhhcCCCChhHHHHHHHHHHHh
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERS---PPIEEVIQ------S-GVVPRF----VEFLMREDYPQLQFEAAWALTNI 67 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~---~~~~~~~~------~-~~l~~L----~~lL~~~~~~~v~~~a~~~L~~l 67 (454)
+.+|.+..+..=..|+..|.+++..-.- ...+.+.+ . |..+.+ .+-+.++. ..+.++..|..+
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L 89 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL 89 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence 4578888888889999999998766421 11222211 2 333333 44444443 355666677776
Q ss_pred cCC-------CchhhHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh
Q 012897 68 ASG-------TSENTKVVIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER 136 (454)
Q Consensus 68 ~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~ 136 (454)
+.. ..+.+-.+.-.+.+|.++.-+++++ ......++..|+.+|.... ...+..++....+.
T Consensus 90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~ 161 (262)
T PF14225_consen 90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG 161 (262)
T ss_pred hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence 652 1222333333456778888777766 2344456677888873221 11233344333222
Q ss_pred ---hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897 137 ---AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213 (454)
Q Consensus 137 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 213 (454)
...+....++..|+.-.. + ......+..+..+|.++-+.++..++..|..+...-+.... ...+++..+
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl 233 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL 233 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence 233444444444443221 1 12245667788999999999999999999988765443322 445688888
Q ss_pred HHhcCCCCCcchhhHHHHHhHhh
Q 012897 214 VELLGHPSPSVLIPALRTVGNIV 236 (454)
Q Consensus 214 ~~ll~~~~~~v~~~a~~~L~~l~ 236 (454)
.++++.+- -..|+.+|-...
T Consensus 234 lrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 234 LRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHhCCcc---HHHHHHHHHHHH
Confidence 88887653 445555554444
No 263
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.88 E-value=0.6 Score=38.00 Aligned_cols=114 Identities=23% Similarity=0.151 Sum_probs=76.5
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ--GALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--- 156 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--- 156 (454)
..+..+.++|+++++.-|-.++..+...+..++. +.+.+. ..+..++..+.+.....+.+.++.++..+...-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3567788899999999999999888888865432 222222 247788888877777888999999998887554
Q ss_pred CCCChhhh----hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897 157 PQPPFDQV----RPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 157 ~~~~~~~~----~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
+....+.. ..+++.++.+++. ......++.+|..+....+.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 22222322 3445555555543 56667777777777655443
No 264
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.86 E-value=0.57 Score=39.82 Aligned_cols=79 Identities=23% Similarity=0.273 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCCh
Q 012897 56 LQFEAAWALTNIASGTSENTKVVIDHG-------AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR-CRDLVLSQGAL 126 (454)
Q Consensus 56 v~~~a~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i 126 (454)
-|..|+++|++++- .+.+.+.+...+ ++..|..++.. +++..|+.|+-.|.+++..+.. .+....+.+.+
T Consensus 140 PqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 48899999999998 566666666554 34555555554 7789999999999999966554 45666677889
Q ss_pred HHHHHHhch
Q 012897 127 IPLLAQLNE 135 (454)
Q Consensus 127 ~~l~~~l~~ 135 (454)
..|+.++.+
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999943
No 265
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.73 E-value=0.85 Score=38.18 Aligned_cols=139 Identities=13% Similarity=0.186 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC---C-CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCChHHHHH
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR---E-DYPQLQFEAAWALTNIAS-GTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~---~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ 89 (454)
.|+..|.-+++. ++....+++..+--.+..+|.. + ..+.+|..++.+++.+.. +++...+.+....++|.++.
T Consensus 119 naL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 119 NALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 455445445554 4555555554332223333332 2 236789999999999998 56777888888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-------CChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-------GALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.++.+++--+..++.++..+..++.......... ..+..++..+.+.....+.+.++.+-..|+..
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 9999999999999999998877665432221111 11222232222334445555555555555544
No 266
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.63 E-value=2.4 Score=35.35 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=87.9
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+..-+++..++..|+..+..++...=-.+.. .+|.++.+..+++ +.++..|...+..+....+.....-...|
T Consensus 15 ~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 15 ELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVESRYSEG 87 (187)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456789999999999998888764222222 4899999999999 99999999999999886655554444434
Q ss_pred ChHHHHHhhCC--CCHH--H---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-------hhhHHHHHHHH
Q 012897 83 AVPIFVKLLAS--PSDD--V---REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-------KLSMLRNATWT 148 (454)
Q Consensus 83 ~i~~L~~lL~~--~~~~--v---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~a~~~ 148 (454)
+..-..+-.. ++.. . ....+..+..+...+...|..+ +..+++.+..+. ...-.....++
T Consensus 88 -i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fl 161 (187)
T PF12830_consen 88 -IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFL 161 (187)
T ss_pred -HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHH
Confidence 3333332221 1111 1 4455666667766555566654 556666663322 23345555555
Q ss_pred HHhhcCC
Q 012897 149 LSNFCRG 155 (454)
Q Consensus 149 L~~l~~~ 155 (454)
..+|+.-
T Consensus 162 a~nLA~l 168 (187)
T PF12830_consen 162 AENLATL 168 (187)
T ss_pred HHHHhcC
Confidence 5666544
No 267
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.62 E-value=18 Score=39.43 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=80.0
Q ss_pred CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 012897 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEK 371 (454)
Q Consensus 292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~ 371 (454)
.+++|.|-.-|.+++..+|..|...++.+.......... .........+.-+.+.+++||..++....+++...+...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~--~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSE--TYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcc--cchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 578999999999999999999999999998853221110 012345566666777788888888888777765533222
Q ss_pred hccCC----------cc------------cccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897 372 NMGTA----------TA------------DVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 372 ~~~~~----------~~------------~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
+.... .. ....+.-.+... .+......+.+.-..|+..|..-+..+|..
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 11000 00 011111112222 445555556778889999998888877764
No 268
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.61 E-value=0.51 Score=39.37 Aligned_cols=109 Identities=9% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhc-CCCchhhHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhh
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIA-SGTSENTKVVIDHGAVPIFVKLLAS---------PSDDVREQAVWALGNVA 110 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~~l~ 110 (454)
...+++.+.+.. ... ..+..|.... .........+++.||+..|+.+|.. .+......++.|+..+.
T Consensus 68 p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 68 PEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 445667776655 221 2222332222 2345677888888999999998853 34578888999999998
Q ss_pred CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897 111 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 153 (454)
.........+...+.+..++..+ .+++..++..++.+|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 66655555555567788888888 6788999999999998876
No 269
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.43 E-value=7.1 Score=39.28 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=81.8
Q ss_pred chHHHHHHhhcCC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhc----CCCCCcchhhHHHHHh
Q 012897 166 PALPALAQLVHSN----DEEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----GHPSPSVLIPALRTVG 233 (454)
Q Consensus 166 ~~l~~l~~ll~~~----~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll----~~~~~~v~~~a~~~L~ 233 (454)
..+..+..++.++ .+.++..++.+++++.. ..+.. ...+...+++.+...+ ...+...+...+++|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4556666776643 55677777777776653 22110 0111123455555544 3455666788899999
Q ss_pred HhhccCccchhhhhccCChHHHHHhhc--CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhh
Q 012897 234 NIVTGDDFQTQCIITYGALPYLLGLLT--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDI 309 (454)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~L~~~L~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v 309 (454)
|+.... .++.+...+. ...+..+|..|+++|.+++...+.. +-+.++.++.+ .++++
T Consensus 472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 987522 2334444443 2225689999999999987644443 34445666655 47889
Q ss_pred HHHHHHHHHHh
Q 012897 310 KKEAAWAISNA 320 (454)
Q Consensus 310 ~~~a~~aL~~l 320 (454)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 98888887655
No 270
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.41 E-value=4.1 Score=39.02 Aligned_cols=274 Identities=11% Similarity=0.102 Sum_probs=123.8
Q ss_pred CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 012897 40 VVPRFVEFLMRE---DYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 40 ~l~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
++..|..++..+ .++.+.....+++..+-..-......+++ ..+..+....++ .+|..-.....+++.+.+....
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 455566666553 22556666666665555443444444433 234444444455 4577777777777666532221
Q ss_pred hH-H--HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-CCChhhhhchHHHHHHh-hcCCChhHHHHHHHHH
Q 012897 116 CR-D--LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQL-VHSNDEEVLTDACWAL 190 (454)
Q Consensus 116 ~~-~--~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L 190 (454)
.. . .-++...++.+...| +..-.+..-++..+|+.|....+ ..........+|.+..- +-.....+ -...+.|
T Consensus 106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL 183 (435)
T PF03378_consen 106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLL 183 (435)
T ss_dssp GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHH
Confidence 11 1 123344577777777 44445666667777777665543 11112223333333311 11111111 2222233
Q ss_pred HHhccCChHHHHHHHHhC----cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc-hhhhhccCChHHHHHhhcCCcch
Q 012897 191 SYLSDGTNDKIQAVIEAG----VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ-TQCIITYGALPYLLGLLTHSHKK 265 (454)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~----~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~L~~~~~~ 265 (454)
..+....+.. +...+ ++..+-.++.+.. .-..+...|..+....+.. ....+ ..++..++.-|++.+..
T Consensus 184 ~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSF---IVANNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--H
T ss_pred HHHHHhCchh---hcchhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcH
Confidence 3333222221 11112 2222334444443 2255777777777655432 12222 24555666666655466
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHh---CCChHHHHHHh--hh----cchhhHHHHHHHHHHhcC
Q 012897 266 SIKKEACWTISNITA-GNRDQIQAVID---AGLVGPLVNLL--QN----AEFDIKKEAAWAISNATS 322 (454)
Q Consensus 266 ~v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll--~~----~~~~v~~~a~~aL~~l~~ 322 (454)
+..+..+..++.++. .+++..-..++ .|+...+..-+ .. ..+.-|+.++-+++++..
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~ 324 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLC 324 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHh
Confidence 777766666666654 34444434442 44444444421 11 123345566666666654
No 271
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.39 E-value=2.4 Score=32.27 Aligned_cols=99 Identities=10% Similarity=0.147 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHH
Q 012897 306 EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQ 385 (454)
Q Consensus 306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (454)
+...-.....=|.+++.. +...... +++.|.+-|+.+++.|+.++|.+|..++..+... |..
T Consensus 14 ~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~ 75 (122)
T cd03572 14 DEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKR 75 (122)
T ss_pred CCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHH
Confidence 333344444555566554 2222222 5788899999999999999999999999887532 443
Q ss_pred HH-HHhccHHHHHHHhc--------CCCHHHHHHHHHHHHHhcCcC
Q 012897 386 LV-EEAEGLEKIENLQS--------HDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 386 ~l-~~~g~~~~l~~l~~--------~~~~~v~~~a~~~l~~~~~~~ 422 (454)
.+ ..+..+..+.+... ..+..|+..|..++.-+|.++
T Consensus 76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 33 33444455555543 245679999999999988765
No 272
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=14 Score=37.44 Aligned_cols=315 Identities=12% Similarity=0.081 Sum_probs=169.2
Q ss_pred ccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHH--HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 3 AGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEV--IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 3 ~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
++|++. |-.+++.+++.++....+. +-..+.+ .-.+....+.++++.-..-+.+...+..++.+.....+......
T Consensus 533 nLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~ 611 (978)
T KOG1993|consen 533 NLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA 611 (978)
T ss_pred HhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455655 6778888888888777654 1111221 12344555666666544346677777777777653333322111
Q ss_pred hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHHhchh---hhhhHHHHHHHHHH
Q 012897 80 DHGAVPIFVKLLA--SPSDDVREQAVWALGNVAG----DSPRCRDLVLSQGALIPLLAQLNER---AKLSMLRNATWTLS 150 (454)
Q Consensus 80 ~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~ 150 (454)
..++..+-.+-+ ++.+-+|...+.++.++.. .++.+.. .+-+++++-.+. ++.-..+.+...-.
T Consensus 612 -~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~EDgmeLW~ 684 (978)
T KOG1993|consen 612 -STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLEDGMELWL 684 (978)
T ss_pred -HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence 112222222222 2557788888888888862 1121111 122334443221 12234444444333
Q ss_pred hhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 229 (454)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 229 (454)
....+.+.. ....-+.+|.+...++...+.++ .++..+.... -.+.. .-.....|++..+..++.+-..+-..+.+
T Consensus 685 ~~L~n~~~l-~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avL 761 (978)
T KOG1993|consen 685 TTLMNSQKL-TPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVL 761 (978)
T ss_pred HHHhccccc-CHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333333221 22235677888887775544443 3333333322 12222 22233447778888888776666677778
Q ss_pred HHHhHhhccCccchhhhhccCChHHHHHhh-cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh-CCChHHHH--------
Q 012897 230 RTVGNIVTGDDFQTQCIITYGALPYLLGLL-THSHKKSIKKEACWTISNITAGNRDQIQAVID-AGLVGPLV-------- 299 (454)
Q Consensus 230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~-------- 299 (454)
.++..+...++ ........++++.+..-+ ...+.|.+...-..+++.++-.+++....+++ ..-.+.++
T Consensus 762 kiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI 840 (978)
T KOG1993|consen 762 KIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWI 840 (978)
T ss_pred HHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88888876555 223344556776665544 33336777777788888887777766555542 22222333
Q ss_pred HHhhh-cchhhHHHHHHHHHHhcCCCCHHHH
Q 012897 300 NLLQN-AEFDIKKEAAWAISNATSGGTHEQI 329 (454)
Q Consensus 300 ~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~ 329 (454)
.+... .+++-|+--+-++..+...+.+...
T Consensus 841 ~~~~~I~~~k~rKl~~LalsSll~t~~~~il 871 (978)
T KOG1993|consen 841 LLFDHINHPKDRKLNTLALSSLLRTNNPDIL 871 (978)
T ss_pred HHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence 22222 3677777778888888877655443
No 273
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.83 E-value=1.1 Score=34.97 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=58.6
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc---CCCHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS---HDNNEIYEKAVK 413 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~---~~~~~v~~~a~~ 413 (454)
++..|..-++++++.++..++..|..+++.+... |...+.....+..+..+.. ..++.|+.++..
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ 105 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 5778888888999999999999999999876542 6667776677777888875 468899999999
Q ss_pred HHHHhcC
Q 012897 414 ILETYWL 420 (454)
Q Consensus 414 ~l~~~~~ 420 (454)
++..+..
T Consensus 106 ll~~W~~ 112 (133)
T cd03561 106 LILAWSE 112 (133)
T ss_pred HHHHHHH
Confidence 9988765
No 274
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=91.78 E-value=1.5 Score=31.89 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=58.0
Q ss_pred HcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 012897 334 REGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 413 (454)
Q Consensus 334 ~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 413 (454)
...++..|+..++.+.+.....++..+..+++.... ...+.+.|+.+-+.++...-+++.+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 345788888999988888888999999998876443 568888999999999998889999888888
Q ss_pred HHHH
Q 012897 414 ILET 417 (454)
Q Consensus 414 ~l~~ 417 (454)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8764
No 275
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.54 E-value=15 Score=37.08 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=79.4
Q ss_pred hHHHHHHhch---hhhhhHHHHHHHHHHhhcCCC----CCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHHHhc
Q 012897 126 LIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK----PQPPFDQVRPALPALAQLVH----SNDEEVLTDACWALSYLS 194 (454)
Q Consensus 126 i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~~l~ 194 (454)
+..+..++.. ..+..++..++.+++.+.... +.........+++.+...|. ..+...+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 4555566532 234556777777777665422 21112223456666665553 456666778888999876
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcC-C--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHH
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLG-H--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKE 270 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~ 270 (454)
... .+..+..++. + .+..+|..|+++|..++...+.. +-+.+++++.+ ..++++|..
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence 432 2334444443 2 34568999999999887644432 23556676654 336678888
Q ss_pred HHHHHHHH
Q 012897 271 ACWTISNI 278 (454)
Q Consensus 271 a~~~L~nl 278 (454)
|+..|...
T Consensus 536 A~~~lm~t 543 (574)
T smart00638 536 AVLVLMET 543 (574)
T ss_pred HHHHHHhc
Confidence 87777654
No 276
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.20 E-value=0.85 Score=32.80 Aligned_cols=74 Identities=8% Similarity=0.070 Sum_probs=56.6
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 328 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (454)
+...+..+.++ .+.+|..+...|..+..... ....-...++..+...++++++-|-.+|..+|..++...+...
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 45567777888 88899999999999998544 1111124577788888999999999999999999988654433
No 277
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=18 Score=39.14 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 350 PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 350 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
.+.....+.++.+++...-+.-. ..+.|.....+ .+.-+.++..+.++++...|.+.+++..
T Consensus 1070 tet~~ltisgIaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 34555667777777654333222 33334444432 2556677778889999988888877754
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.08 E-value=1.8 Score=33.80 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=60.9
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC--HHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~al~~L~~l~~~~ 367 (454)
++..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..+++.+. +.|+..++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45567777888999999999999999999988888788888889999999888644 348888888888876644
No 279
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.07 E-value=5.4 Score=40.54 Aligned_cols=164 Identities=17% Similarity=0.116 Sum_probs=93.5
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChhh---------HHHHHhcCChHHHHHHhc---hhhhhhHHHHHH
Q 012897 83 AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPRC---------RDLVLSQGALIPLLAQLN---ERAKLSMLRNAT 146 (454)
Q Consensus 83 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~ 146 (454)
.+..+..+++. .++.++..|+.+++.+....... .........++.+...+. ...+.+-+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 35556666654 45778888887777765211100 111122234666666664 234557788889
Q ss_pred HHHHhhcCCCCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CC
Q 012897 147 WTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PS 221 (454)
Q Consensus 147 ~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~ 221 (454)
.+|+|+-. ...++.+..++... ...+|..|+++|..++...+.. +.+.++.++.+ .+
T Consensus 512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTED 573 (618)
T ss_dssp HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-
T ss_pred HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCC
Confidence 99999854 25678888887765 6778999999999887665543 23455666644 45
Q ss_pred CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 222 PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 222 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
.++|.+|...|... +|.. ..+..+...+...++.+|.......
T Consensus 574 ~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 574 PEVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 67888887666442 2212 2355677777666566666554433
No 280
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.00 E-value=2.8 Score=42.65 Aligned_cols=311 Identities=16% Similarity=0.130 Sum_probs=151.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH------Hh
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV------ID 80 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------~~ 80 (454)
-+|..+...+++.|..++.+ ......+++.|++.+|+..=.-+ +...-...||..+.. .....+.+ +-
T Consensus 364 ~~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~-~q~~mervc~~p~~v~ 437 (1516)
T KOG1832|consen 364 LDDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGS-LQGIMERVCALPLVVI 437 (1516)
T ss_pred cccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence 35566777888888888877 45666778888877776553221 222223345555554 22222221 22
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh------------------hhhhHH
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER------------------AKLSML 142 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------------------~~~~~~ 142 (454)
..++..-+.+|.-....-+.++...++...... ..-+.+-..+.++.|+.++..- .+...-
T Consensus 438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr-ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~ 516 (1516)
T KOG1832|consen 438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVFR-AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMA 516 (1516)
T ss_pred HHHHHHHHHHHhcchhhccchHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhh
Confidence 345566666665433333333332222211100 1112233345566666666210 012233
Q ss_pred HHHHHHHHhhcCCC-----CC-CChhhhhchHHHHHHhhcCC------ChhHHHHHHHHHHHhccCCh-------HHHHH
Q 012897 143 RNATWTLSNFCRGK-----PQ-PPFDQVRPALPALAQLVHSN------DEEVLTDACWALSYLSDGTN-------DKIQA 203 (454)
Q Consensus 143 ~~a~~~L~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~------~~~v~~~a~~~L~~l~~~~~-------~~~~~ 203 (454)
...|.+|..-.... .. .......+..+..++-+... ..+..+.+++-+-.+....+ ...+.
T Consensus 517 ~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aen 596 (1516)
T KOG1832|consen 517 FHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAEN 596 (1516)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHH
Confidence 34444554433221 00 11111122222222222211 12223334443333322222 23345
Q ss_pred HHHhCcHHHHHHhcCCC-C-------CcchhhHHHHHhHhhccCccchhhhhc--------cCChHHHHHhhcC---Ccc
Q 012897 204 VIEAGVCPRLVELLGHP-S-------PSVLIPALRTVGNIVTGDDFQTQCIIT--------YGALPYLLGLLTH---SHK 264 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~~~-~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l~~L~~~L~~---~~~ 264 (454)
+.+.+.+..++.+..-+ + .+....|+.+|..+..-..-+ ..+.. ..++..++..-.- ..+
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeecccccccccC
Confidence 67777788888776442 2 234455666666655433322 22221 1133333332211 116
Q ss_pred hhHHHHHHHHHHHHhcCCHHH-----------------------------------HHHHHhCCChHHHHHHhhhcc---
Q 012897 265 KSIKKEACWTISNITAGNRDQ-----------------------------------IQAVIDAGLVGPLVNLLQNAE--- 306 (454)
Q Consensus 265 ~~v~~~a~~~L~nl~~~~~~~-----------------------------------~~~l~~~~~i~~L~~ll~~~~--- 306 (454)
+.++..|+.++.|+....|++ +..+...++|..|+.+++...
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 788899999888887543211 111224678999999998753
Q ss_pred --hhhHHHHHHHHHHhcCCCC
Q 012897 307 --FDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 307 --~~v~~~a~~aL~~l~~~~~ 325 (454)
..+|.-|+.+|.-++....
T Consensus 756 ~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcH
Confidence 4689999999999998543
No 281
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.94 E-value=13 Score=37.80 Aligned_cols=306 Identities=11% Similarity=0.071 Sum_probs=139.4
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCC--CCHHHHHHHHHHHHHhhCC
Q 012897 36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLAS--PSDDVREQAVWALGNVAGD 112 (454)
Q Consensus 36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~--~~~~v~~~a~~~L~~l~~~ 112 (454)
.+.+.+..+-+-|.-.|...-|..|+..+..++...+.....++. +.++.++. ...+ .+..-+..++..+..++..
T Consensus 358 FED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik 436 (960)
T KOG1992|consen 358 FEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK 436 (960)
T ss_pred hccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence 334445555555555552233556677777788744333333332 23444444 2233 3466667777777777643
Q ss_pred ChhhHHHHHhc----CChHHHHH----Hhch---hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChh
Q 012897 113 SPRCRDLVLSQ----GALIPLLA----QLNE---RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE 181 (454)
Q Consensus 113 ~~~~~~~~~~~----~~i~~l~~----~l~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~ 181 (454)
....+.-+... +.+..+.. -|.+ ...+-++..+ +..+............-.++|.++..|.++..-
T Consensus 437 ~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~a---IKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~v 513 (960)
T KOG1992|consen 437 GQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADA---IKYIYTFRNQLGKEHLMALLPRLIRFLEAESRV 513 (960)
T ss_pred cchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcc---cceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence 22111111111 11111111 1111 1112222222 222222223344445567899999999999999
Q ss_pred HHHHHHHHHHHhccCChH-HHHHHHHhCcHH-------HHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc---cC
Q 012897 182 VLTDACWALSYLSDGTND-KIQAVIEAGVCP-------RLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT---YG 250 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~ 250 (454)
+-.+|+.++-.+-..... ....+-...+.+ .++..++.+...--+..++++..+..-.+........ .+
T Consensus 514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~ 593 (960)
T KOG1992|consen 514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ 593 (960)
T ss_pred HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence 999999998776432221 111111122222 2222233332222223333333333222211111110 02
Q ss_pred ChHHHHHhhcCCcchhHHHHHHHHHH----HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 251 ALPYLLGLLTHSHKKSIKKEACWTIS----NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 251 ~l~~L~~~L~~~~~~~v~~~a~~~L~----nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
..+.+...-+++.+|..-......++ ..+..++..+..+ +...+|.+...+..+-.+.--.+...++.+......
T Consensus 594 Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 594 LTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22333334456655554443333333 3333444444333 345677777777766556666666666666543321
Q ss_pred ---HHH---------HHHH-HcCCcHHHhhccC
Q 012897 327 ---EQI---------KYLV-REGCIKPLCDLFV 346 (454)
Q Consensus 327 ---~~~---------~~l~-~~~~i~~L~~~l~ 346 (454)
+.. +.++ ..|-+++++.+++
T Consensus 673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 111 1222 3577888777765
No 282
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.86 E-value=12 Score=38.02 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=100.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---hhhhhHHHHHHHHHHhhcCCC-C-
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLSNFCRGK-P- 157 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~- 157 (454)
.+..+..++.+....-.+ +...|..+.......... .+..+..++.. ..++.++..|+.+++.+.... .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 566666666663322222 333343333222111112 24445555532 234556666776666665332 1
Q ss_pred --------CCChhhhhchHHHHHHhh----cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC---CC
Q 012897 158 --------QPPFDQVRPALPALAQLV----HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP---SP 222 (454)
Q Consensus 158 --------~~~~~~~~~~l~~l~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~ 222 (454)
.........+++.+...+ ...+..-+..++.+|+|+... ..++.+..++... ..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccch
Confidence 112222234444444444 456778888999999998531 3566777777665 56
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 301 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 301 (454)
.+|..|+++|..++...+.. +.+.+++++.+. .+.++|..|..+|...- |.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRCN---PSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CCH-------HHHHHHHHH
Confidence 78999999999886544422 345677777543 25678888876666531 221 134445555
Q ss_pred hhhc-chhhHHHHHH
Q 012897 302 LQNA-EFDIKKEAAW 315 (454)
Q Consensus 302 l~~~-~~~v~~~a~~ 315 (454)
+..+ +..|......
T Consensus 601 l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 601 LWNEPSNQVASFVYS 615 (618)
T ss_dssp HTT-S-HHHHHHHHH
T ss_pred HhhCchHHHHHHHHH
Confidence 5443 5566554443
No 283
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=90.46 E-value=16 Score=34.68 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCC--cHHHHHHcCCHHHHHHhhcCCC----Ch--hHHHHHHHHHHHhcCCCchhh-
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSP--PIEEVIQSGVVPRFVEFLMRED----YP--QLQFEAAWALTNIASGTSENT- 75 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~l~~L~~lL~~~~----~~--~v~~~a~~~L~~l~~~~~~~~- 75 (454)
+...+.+-|..|+...+++..+..-. +.+.+.+.-+.+.+-+++.+.+ .| -.+..++.+|...|. .++..
T Consensus 20 ~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~pElAs 98 (698)
T KOG2611|consen 20 LKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VPELAS 98 (698)
T ss_pred hcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Chhhcc
Confidence 34566778899999999998876332 3445777777888888887643 22 245566777777777 44432
Q ss_pred -HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHH
Q 012897 76 -KVVIDHGAVPIFVKLLAS-PS------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 147 (454)
Q Consensus 76 -~~~~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 147 (454)
+.++ +-||.|+..+.. .+ ..+.+.+..+|..+++.. .....++..|+++.+.+...-..-..-..-++.
T Consensus 99 h~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 99 HEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred CHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 2233 468999998865 22 237778888999998764 455677788999999877632111111112222
Q ss_pred HHHhhcCCC--CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 148 TLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 148 ~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
++.-+...- -.........++..+..=+...+.......|..|..+.
T Consensus 176 Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 176 VLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222221111 01111112223333333344456667777787777543
No 284
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.88 E-value=1.6 Score=34.01 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=58.4
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-C-HHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-N-NEIYEKAVKI 414 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~-~~v~~~a~~~ 414 (454)
++..|..-+.+++|.++..++..|..+++.+... |...+...++++.|..+...+ + +.|++++..+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l 105 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL 105 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5777888888999999999999999999876442 677788888888898886553 3 3399999999
Q ss_pred HHHhcCc
Q 012897 415 LETYWLE 421 (454)
Q Consensus 415 l~~~~~~ 421 (454)
+..+...
T Consensus 106 i~~W~~~ 112 (133)
T smart00288 106 IQEWADA 112 (133)
T ss_pred HHHHHHH
Confidence 9887653
No 285
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.84 E-value=2 Score=35.02 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=77.5
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc--cCChHHHHHhhcCCcchhHHHHHHHHHHHHhc---CC
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT--YGALPYLLGLLTHSHKKSIKKEACWTISNITA---GN 282 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~ 282 (454)
..+..+..+++++++.-|..++..+...+..++. +.+.+ ...+..++.+|+.+..+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667788999999999999999999888876532 22323 24678899999887677889999999988875 45
Q ss_pred HHHHHHHHhC---CChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 283 RDQIQAVIDA---GLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 283 ~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
++..+++... ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 5545454422 234444444443 56667777777777664
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.66 E-value=2.7 Score=32.77 Aligned_cols=76 Identities=8% Similarity=-0.038 Sum_probs=62.8
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC---CCHHHHHHHHHHHHHHHHhhhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC---PDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~---~~~~v~~~al~~L~~l~~~~~~ 369 (454)
++..|..-++++++.++..|+..|-.+..++.......+.+..++..|+.++.. .++.|+..++..+.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 466677788889999999999999999999888777777777888889998875 4778999999999888765443
No 287
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.42 E-value=27 Score=39.29 Aligned_cols=232 Identities=17% Similarity=0.093 Sum_probs=120.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
.+..++..+..++ |..+..+..++..++..-++ ...+ .+..+.+++-+.+ .++..|..-..+++.+-++......
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~-~~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS-APFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc-cchH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3445566677777 88888888888888862111 1111 1234555555655 4444444333344433221111111
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC---hhHHHHHHHHHH----
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND---EEVLTDACWALS---- 191 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~a~~~L~---- 191 (454)
.-.....+..++.+..++.++.|+..++.++..+...............+..+..++.+.. .++...--+++.
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 1111223556666665666779999999999998877643445555566666666665432 122221111111
Q ss_pred --Hhc-------cCChH-HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC
Q 012897 192 --YLS-------DGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH 261 (454)
Q Consensus 192 --~l~-------~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 261 (454)
++. ..+.. -....++...+....-++.++++-++.++..|+.++-...+.... -..++..+..++.+
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 111 11110 011122223333344455667888999999999998876653211 12345556666655
Q ss_pred CcchhHHHHHHHHHHHHh
Q 012897 262 SHKKSIKKEACWTISNIT 279 (454)
Q Consensus 262 ~~~~~v~~~a~~~L~nl~ 279 (454)
. .--.|.....++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 5 4444444444444443
No 288
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.12 E-value=1.9 Score=40.74 Aligned_cols=141 Identities=10% Similarity=0.094 Sum_probs=78.7
Q ss_pred CChHHHHHhhcCC---cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 250 GALPYLLGLLTHS---HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 250 ~~l~~L~~~L~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
.+...|..+|... -.+.+|...+.+|.-|-..+.- .-..++..++.++..++...|.-+..-|...+.+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i-----~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI-----VAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 4455666676543 1567888888888776543211 1123566677788877777776555544433332111
Q ss_pred HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHH
Q 012897 327 EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNE 406 (454)
Q Consensus 327 ~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~ 406 (454)
.....-....+-..+..+|..+++.-...++..+..+.+.. ++.++..+..+..-+-|.++.
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~------------------iW~d~~tV~i~~~acf~~~~k 152 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRN------------------IWNDSKTVNIITTACFSKVPK 152 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc------------------ccccchhHHHHHHHHhccCcH
Confidence 11111122233456777888888875556666666665432 222344445555557778888
Q ss_pred HHHHHHH
Q 012897 407 IYEKAVK 413 (454)
Q Consensus 407 v~~~a~~ 413 (454)
|.-.+..
T Consensus 153 i~vs~l~ 159 (616)
T KOG2229|consen 153 ILVSGLR 159 (616)
T ss_pred HHHhhhH
Confidence 7655544
No 289
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.78 E-value=7.1 Score=34.74 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=92.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh
Q 012897 42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
..+.+.+..-. ++-+--++..++-++. .+.....+...+ ....+..++.. ..+..+-.++++++|+.....
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~- 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP- 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence 34445544443 3445666666666666 455555554433 24444544432 567888899999999976544
Q ss_pred hHHHHHhcC--ChHHHHHHhchh---hhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhhc-C-CChhHHHHH
Q 012897 116 CRDLVLSQG--ALIPLLAQLNER---AKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVH-S-NDEEVLTDA 186 (454)
Q Consensus 116 ~~~~~~~~~--~i~~l~~~l~~~---~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~-~-~~~~v~~~a 186 (454)
.+..+.... .+...+..+... .+..++..++.++.|++... ..........++..+...+. . .+++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 455544432 222233323232 27788889999999987554 11122233446666666433 2 689999999
Q ss_pred HHHHHHhccCChHH
Q 012897 187 CWALSYLSDGTNDK 200 (454)
Q Consensus 187 ~~~L~~l~~~~~~~ 200 (454)
+.+++++....+..
T Consensus 223 LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 223 LVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHCCSHHH
T ss_pred HHHHHHHhccChhH
Confidence 99999999665443
No 290
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.63 E-value=2.3 Score=33.56 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC-HH---HHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-PR---IVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~-~~---v~~~al~~L~~l~~~~ 367 (454)
++..|..-+.++++.++..|+..|-.+..++.......+.+..++..|..++..+. .. |+..++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999887777777777778888998777433 33 8888888888776654
No 291
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.61 E-value=25 Score=34.17 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=115.6
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC----cchhhHHHHHhHhhccCccc
Q 012897 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP----SVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~ 242 (454)
....+...+.+++...+..++..+..++.. ......++....+..|.+++.+... ++...++.+++.+..... .
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 445677888888888777788888888755 4566778888999999999977643 455566666666655433 1
Q ss_pred hhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 243 TQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
....+...++..+..+..-. .+..+-..|...|-++..+++...+.+.+.--+..|+..++..+..++..|...+..+.
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11222333444444443211 14457778888888888877766666677778999999999999999999888888888
Q ss_pred CCCCHHHHHHHHH
Q 012897 322 SGGTHEQIKYLVR 334 (454)
Q Consensus 322 ~~~~~~~~~~l~~ 334 (454)
...+++.+..+.+
T Consensus 242 ~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDDKRFEMAK 254 (713)
T ss_pred hhCChHHHHHHHH
Confidence 8777666555544
No 292
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=88.47 E-value=6.5 Score=36.46 Aligned_cols=217 Identities=19% Similarity=0.145 Sum_probs=111.8
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897 36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
+...++..+..++....++......+.++..-+... ..-+...++..+.+-+.+..+.+|+..+..++........
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 444567778888887665777777777776655311 1111224567777777777777999988888887641111
Q ss_pred hHHHHHhcCChHHHHHHhchh---hhhhHH---HHHHHHHHhhcCCCCCCChhhhhchH--------HH-H--HHhhcC-
Q 012897 116 CRDLVLSQGALIPLLAQLNER---AKLSML---RNATWTLSNFCRGKPQPPFDQVRPAL--------PA-L--AQLVHS- 177 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~---~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~l--------~~-l--~~ll~~- 177 (454)
......-...++.+++.+.+- +-+... ..++.++..+.... ........... |. + -++...
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl 173 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LDKIDSKNISFWSLALDPKPSFLLSEKVYSKL 173 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-chhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence 111111122466666666321 111100 11111111111110 00000000000 00 0 022223
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHHHhHhhccCccchhhhhccCChHHH
Q 012897 178 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYL 255 (454)
Q Consensus 178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 255 (454)
.+++.....+.++..+..........-.....-..++.++.++ .+.+|..|+.++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 4555666677777776654333222111234566788888777 8899999999999998766643 333445555
Q ss_pred HHhhcC
Q 012897 256 LGLLTH 261 (454)
Q Consensus 256 ~~~L~~ 261 (454)
-..+..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 555543
No 293
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=88.28 E-value=7.6 Score=39.57 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=96.5
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+..|.|.|..+...+-..+...+...+.+ + ++..|++..-+.++ ..|+.+|..+=. |..+
T Consensus 10 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~----~----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K------ 69 (668)
T PF04388_consen 10 LSLLESNDLSVLEEIKALLQELLNSDREP----W----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK------ 69 (668)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhccchH----H----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH------
Confidence 34566777777777777777666553111 1 25556665444332 234445544322 2111
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
.++..|-..+. .+..|..++..|+.+....+..-..+.+...+..|+++|..+.+..+...|+.+|..|.-.-+..-.
T Consensus 70 ~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 70 HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhh
Confidence 22344444444 4578888999999999888888888888899999999998888999999999998888755443333
Q ss_pred hhhhchHHHHHHhh
Q 012897 162 DQVRPALPALAQLV 175 (454)
Q Consensus 162 ~~~~~~l~~l~~ll 175 (454)
.....++.+...++
T Consensus 148 ~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 148 PHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 294
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.99 E-value=24 Score=33.23 Aligned_cols=218 Identities=16% Similarity=0.164 Sum_probs=120.2
Q ss_pred hhhHHHHHHHHHHhhcCCCC---CCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 012897 138 KLSMLRNATWTLSNFCRGKP---QPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 212 (454)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 212 (454)
+..+..+|+.+++.+..++. .........++...+..+.++ +..+....+++|..--... .++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence 67888999999999987752 122222233555555555433 4456777777776532211 1223334444
Q ss_pred HHHhc---C--CCCCcchhhHHHHHhHhhccCccchhhhhcc-CChHHHHHhhcCCcchhHHHHHHHHHHHHhc--CCH-
Q 012897 213 LVELL---G--HPSPSVLIPALRTVGNIVTGDDFQTQCIITY-GALPYLLGLLTHSHKKSIKKEACWTISNITA--GNR- 283 (454)
Q Consensus 213 L~~ll---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~--~~~- 283 (454)
++..+ . -+...+....+.++.++....+... .-.. ..++.++..+-+. ...+|..|..++..+.. +..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence 44443 2 2455677888889988887555321 1112 3677777777777 66777776655544432 211
Q ss_pred HH---HHHHHhCCC---------hHHHHHHhhhcchhhHHHHHHHHHHhcCCCC-HHHHHHHHHcCCcHHHhhccCCCCH
Q 012897 284 DQ---IQAVIDAGL---------VGPLVNLLQNAEFDIKKEAAWAISNATSGGT-HEQIKYLVREGCIKPLCDLFVCPDP 350 (454)
Q Consensus 284 ~~---~~~l~~~~~---------i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~ 350 (454)
.. .....+... .+.|..++.+++.....-=+|...-+..+.. .+.-..+ +..+.....+++++++
T Consensus 211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence 11 112222222 2335666666333333333443333333322 1211221 2356777779999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012897 351 RIVTVCLEGLENILK 365 (454)
Q Consensus 351 ~v~~~al~~L~~l~~ 365 (454)
.++..|..+=..++.
T Consensus 289 ~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 289 QVKIQAFKAWRRLIY 303 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988777766
No 295
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.57 E-value=2.6 Score=33.24 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=56.3
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHH---HHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNE---IYEKAV 412 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~---v~~~a~ 412 (454)
++..|..-+.+++|.++..|+..|..+++.+... |...+.....+..|..+.. ..... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 5777888888899999999999999999876542 6677777778888888643 44444 899999
Q ss_pred HHHHHhcC
Q 012897 413 KILETYWL 420 (454)
Q Consensus 413 ~~l~~~~~ 420 (454)
.++..+-.
T Consensus 111 ~ll~~W~~ 118 (140)
T PF00790_consen 111 ELLQEWAE 118 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 296
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=87.41 E-value=20 Score=41.84 Aligned_cols=269 Identities=15% Similarity=0.171 Sum_probs=137.4
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhh---HHHH--hCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 44 FVEFLMREDYPQLQFEAAWALTNIASGTSENT---KVVI--DHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~--~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
+...+...+ ++++..+..+++.+........ .... ....+.++..+- .++++.++......+. ..+-
T Consensus 486 ~~~~~~~~~-~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADD-SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFD 558 (2341)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchh
Confidence 444555666 8999999777777665222200 0000 112233333322 2356665554444333 1111
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh-chHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
......+.+..+...+ .+..-.++..+...+++++..++........ ..+..+..+..+.-..+...+..-+..+...
T Consensus 559 ~~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS 637 (2341)
T ss_pred hhhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence 2222223344444444 5556677888888888888765411111111 1111111111122222222222222222222
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
.+..+.... ...+..++..+.+++..+...+..+++.||...........+ ..++.+.+.+.......-|..+.++++
T Consensus 638 ~~~~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~ 715 (2341)
T KOG0891|consen 638 SPVLISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALG 715 (2341)
T ss_pred HHHHHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence 222222222 245566777788888889999999999999866534433444 566667777665536667788899999
Q ss_pred HHhcCCHHHHHHHH-hCCChHHHHHHhhhc-chhhHHHHHHHHHHhcC
Q 012897 277 NITAGNRDQIQAVI-DAGLVGPLVNLLQNA-EFDIKKEAAWAISNATS 322 (454)
Q Consensus 277 nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 322 (454)
++.+...-...... ...++..+...+..+ ...++..+...++++..
T Consensus 716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 99864222111111 123455555555554 55667777777775544
No 297
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.18 E-value=4.4 Score=34.66 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=61.1
Q ss_pred cchhhHHHHHhHhhccCccchhhhhcc-------CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCC
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITY-------GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-DAGL 294 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~ 294 (454)
.-+..|+.+|+.++-... +...++.. .+...|..++...++.-.|+.|...|.+++.++......+. +.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 347789999999986432 33344433 34566777777666888999999999999997666654544 6789
Q ss_pred hHHHHHHhhhcch
Q 012897 295 VGPLVNLLQNAEF 307 (454)
Q Consensus 295 i~~L~~ll~~~~~ 307 (454)
|..|+.+++..+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 298
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.09 E-value=3.5 Score=31.11 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=52.6
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH------hcCCCHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL------QSHDNNEIYEK 410 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l------~~~~~~~v~~~ 410 (454)
++..|..-+.++++.++..++..|..+++.+... |...+.....+..+.++ -...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5677777788889999999999999999987653 55556555555555332 13457899999
Q ss_pred HHHHHHHhc
Q 012897 411 AVKILETYW 419 (454)
Q Consensus 411 a~~~l~~~~ 419 (454)
+..+++.+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 999988764
No 299
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.24 E-value=9.2 Score=27.82 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
++|..|+..+..=.... --....+. ....+..|+..++.+. +.....++..+..++. ++.....+.+-|+...|-+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 56777776665433322 12222233 4567888888899888 5688999999999888 7888888888898888666
Q ss_pred hhCCCCHHHHHHHH
Q 012897 90 LLASPSDDVREQAV 103 (454)
Q Consensus 90 lL~~~~~~v~~~a~ 103 (454)
+=..-++..+...-
T Consensus 79 lr~~~~~~~~~~id 92 (98)
T PF14726_consen 79 LRPNVEPNLQAEID 92 (98)
T ss_pred HHhcCCHHHHHHHH
Confidence 65555555554443
No 300
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.00 E-value=4.8 Score=33.88 Aligned_cols=136 Identities=10% Similarity=0.125 Sum_probs=86.5
Q ss_pred hhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC----CcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHH
Q 012897 226 IPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 226 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ 300 (454)
..|+..|.-++.+ ++.+..+++..+--.+...|.. .....+|..+..+++.+.. +++.....+....++|..++
T Consensus 118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 3455555555554 4456667776665555555532 2245688999999999998 67777777888899999999
Q ss_pred HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc--------CCcHHH-hhccCCCCHHHHHHHHHHHHHHH
Q 012897 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE--------GCIKPL-CDLFVCPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--------~~i~~L-~~~l~~~~~~v~~~al~~L~~l~ 364 (454)
+++.++.--+.-|+..+..+...+ ...+++... .++..+ .++.+.....+.+.+++|-.++.
T Consensus 197 Ime~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence 999988877888888888877643 333333221 111111 12333445566666666655554
No 301
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.90 E-value=52 Score=34.98 Aligned_cols=394 Identities=15% Similarity=0.122 Sum_probs=194.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC---CCchhhHHHHh
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVID 80 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~ 80 (454)
+|++.+.+++...+..+.++.+.. +++-...-+..-+|.++.-+..-. ..+|...+.+|-.-.. .-|+ +
T Consensus 475 FLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-q----- 546 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-Q----- 546 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-H-----
Confidence 356777778888888888877664 444444455667888887777655 4666666555533222 0111 1
Q ss_pred CCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh-----hhhHHHHHHHHHHhhcC
Q 012897 81 HGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA-----KLSMLRNATWTLSNFCR 154 (454)
Q Consensus 81 ~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-----~~~~~~~a~~~L~~l~~ 154 (454)
-+-.|+-+|+.+ +..+....+.....+.+.+..+++.+.+-|.++.|...+.++. +.. . .+.....
T Consensus 547 --ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---s---gvsehyd 618 (2799)
T KOG1788|consen 547 --ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---S---GVSEHYD 618 (2799)
T ss_pred --HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---h---hHHHHhh
Confidence 123455566654 3445555556666676777778888888888887776664321 110 0 0111111
Q ss_pred CCC-CCChhh---hhchHHHHHHhhcCCCh--hH------HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897 155 GKP-QPPFDQ---VRPALPALAQLVHSNDE--EV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222 (454)
Q Consensus 155 ~~~-~~~~~~---~~~~l~~l~~ll~~~~~--~v------~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 222 (454)
..+ ...+.. ....+-.--++.++.+. .+ ....-.+|..+..+..++...+.+..++..++.++ -++
T Consensus 619 rnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--ind 696 (2799)
T KOG1788|consen 619 RNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--IND 696 (2799)
T ss_pred cCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--ech
Confidence 111 100000 00111111122222211 11 11223456666677777777777888888888877 445
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCc-----------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSH-----------KKSIKKEACWTISNITAGNRDQIQAVID 291 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 291 (454)
+.|...++++..+....+.+. +..-+-.++..|++.- ..........++..+..-+......+-+
T Consensus 697 ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge 772 (2799)
T KOG1788|consen 697 EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE 772 (2799)
T ss_pred HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc
Confidence 678888888888876555432 2233445666665521 1123334444555554333333334456
Q ss_pred CCChHHHHHHhhh----------cchhhHHHHHHHHHH---hcCCCCHHHH-------------HHHHHcCCc-----HH
Q 012897 292 AGLVGPLVNLLQN----------AEFDIKKEAAWAISN---ATSGGTHEQI-------------KYLVREGCI-----KP 340 (454)
Q Consensus 292 ~~~i~~L~~ll~~----------~~~~v~~~a~~aL~~---l~~~~~~~~~-------------~~l~~~~~i-----~~ 340 (454)
.+++..|...+.. +|.-+-..-...|.. ++...++.++ ..+...|++ +.
T Consensus 773 atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~ 852 (2799)
T KOG1788|consen 773 ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERH 852 (2799)
T ss_pred cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHH
Confidence 6776666665532 111111111111111 1111111111 122222310 01
Q ss_pred HhhccC-----C-CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 012897 341 LCDLFV-----C-PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI 414 (454)
Q Consensus 341 L~~~l~-----~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 414 (454)
.+.++. . ..|.+. .-..+...+++.+++...-.-++|..++..+.+-..|....|.+..-...|+++-.-..+
T Consensus 853 viqlllElalevlvppfLt-SEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~l 931 (2799)
T KOG1788|consen 853 VIQLLLELALEVLVPPFLT-SESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNL 931 (2799)
T ss_pred HHHHHHHHHHHhhCCchhh-hhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHH
Confidence 111111 0 011111 112233444444443222222233566667777889999999888777777887776776
Q ss_pred HHHhcC
Q 012897 415 LETYWL 420 (454)
Q Consensus 415 l~~~~~ 420 (454)
++....
T Consensus 932 leSlaR 937 (2799)
T KOG1788|consen 932 LESLAR 937 (2799)
T ss_pred HHHHhh
Confidence 665543
No 302
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.65 E-value=6.9 Score=30.82 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=58.1
Q ss_pred ChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HhhccCC---CCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFVC---PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~~l~~---~~~~v~~~al~~L~~l~~~~ 367 (454)
.+..|..-+.. .++.++..|+..|-.+..++.......+.+.+++.. |+.+++. .+..|+..++..+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 34455555654 588899999999999999988888888888899987 8998873 34588999998888887544
No 303
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.15 E-value=32 Score=31.89 Aligned_cols=214 Identities=11% Similarity=0.055 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC
Q 012897 99 REQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN 178 (454)
Q Consensus 99 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 178 (454)
|.....+|..+.. .+ ....++..+..++.++.++......+.++..=+... .......++..+.+-+.+.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 4445555666543 21 222346677777777788887777777666544332 2223356777888888888
Q ss_pred ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhc----CCCCCcch---hhHHHHHhHhhccCccchhh-----
Q 012897 179 DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELL----GHPSPSVL---IPALRTVGNIVTGDDFQTQC----- 245 (454)
Q Consensus 179 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll----~~~~~~v~---~~a~~~L~~l~~~~~~~~~~----- 245 (454)
.+.+|..-+.+++...... ......+.. .+++.|...+ .++-+... ..++.++..+..........
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISF 152 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhh
Confidence 8888888888888776510 111122222 4666666666 33332221 11222221111101000000
Q ss_pred --hh-cc--C--ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHH
Q 012897 246 --II-TY--G--ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWA 316 (454)
Q Consensus 246 --~~-~~--~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~a 316 (454)
+. +. . .-+.++..+ . +++.....+.++..+..+.......-....+-..++.++-+. .+.+|+.|..+
T Consensus 153 ~~l~~~~kps~ll~~kvyskl--~-~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKL--A-SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhccCCCcchhcCHHHHhcc--C-CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00 00 0 012222222 2 333344445555555443222111100123455677777777 89999999999
Q ss_pred HHHhcCCCCH
Q 012897 317 ISNATSGGTH 326 (454)
Q Consensus 317 L~~l~~~~~~ 326 (454)
+..+......
T Consensus 230 l~~l~~~~~~ 239 (339)
T PF12074_consen 230 LKKLYASNPE 239 (339)
T ss_pred HHHHHHhChH
Confidence 9998876443
No 304
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=84.70 E-value=28 Score=30.82 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=95.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHhcCChHHHHHHhchhh---hhhHHHHHHHHHHhh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-------PRCRDLVLSQGALIPLLAQLNERA---KLSMLRNATWTLSNF 152 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~l 152 (454)
+-+.+++-+.+ ....+.++.++..+.... ...|-...-...+|.++..+.+.. .......++..|..+
T Consensus 65 lq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 65 LQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 33334444433 344555666676665321 112222222233555555553222 123455666788888
Q ss_pred cCCCCCCChhhhhchHHHHHHhhc---CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHH
Q 012897 153 CRGKPQPPFDQVRPALPALAQLVH---SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPAL 229 (454)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 229 (454)
+...... +.-..+..+.+ .+..+-...++..|+.-.. +. .+...+..++.+|.++.+.++..++
T Consensus 143 a~~~~~~------~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 143 AEAQGLP------NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHhCCCc------cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 8543222 11122222222 2233444555555544221 11 1224566788889888889999999
Q ss_pred HHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 230 RTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 230 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
.+|..+....+-... ...+.+..+++++.++ ...+|..+|-+...
T Consensus 210 ~iL~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 999999876554432 5556888999999877 34566666655543
No 305
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.64 E-value=15 Score=27.99 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc-CCcHHHhhccCCCC---
Q 012897 274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE-GCIKPLCDLFVCPD--- 349 (454)
Q Consensus 274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~~l~~~~--- 349 (454)
=|++++..++.... .++..|.+-|+..++.|+..++.+|.+++..+++.+...+... ..|..+.+.-...|
T Consensus 24 Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 34455554444332 3566788888888999999999999999999988877776653 44555555444333
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 012897 350 -----PRIVTVCLEGLENILK 365 (454)
Q Consensus 350 -----~~v~~~al~~L~~l~~ 365 (454)
..|+..|-.++..++.
T Consensus 99 Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhc
Confidence 2477777777777764
No 306
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.58 E-value=35 Score=33.60 Aligned_cols=222 Identities=14% Similarity=0.005 Sum_probs=119.0
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC--C---------CCCcchhhHHHHHhHhhccCccchhh
Q 012897 177 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG--H---------PSPSVLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 177 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
+++.+|...+-..|..+...-+ +..++..|+.+.. . .++.++... |..++.... ..
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kI---L~~L~kS~~---Aa 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKI---LSLLSKSVI---AA 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHH---HHHHHHhHH---HH
Confidence 3455666666666666553311 1234555555544 1 123344444 444443111 01
Q ss_pred hhccCChHHHHHhhcCC-cchhHHHHHHHHH---HHHhcC-CHHHH---HHHHhCCChHHHHH----HhhhcchhhHHHH
Q 012897 246 IITYGALPYLLGLLTHS-HKKSIKKEACWTI---SNITAG-NRDQI---QAVIDAGLVGPLVN----LLQNAEFDIKKEA 313 (454)
Q Consensus 246 ~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a 313 (454)
-.-..++..+...+.+. .+.++|..+...+ ...... .+... ...+..++.+.+-. --...+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 11123444444444433 1446666666666 444442 23322 23344555555510 0122477899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccH
Q 012897 314 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGL 393 (454)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 393 (454)
..+|+.++...+.-.. .+-+++..|.+-++.+.++++..+-++|..+.......... .. ...... ..
T Consensus 395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~-~~~~~~---~~ 461 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------ED-EQKRLL---LE 461 (501)
T ss_pred HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hh-HHHHHH---HH
Confidence 9999999997543221 12356888888888889999999999999987765432210 00 000000 01
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCC
Q 012897 394 EKIENLQSHDNNEIYEKAVKILETYWLEEDD 424 (454)
Q Consensus 394 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 424 (454)
..+.....+....++-.|.+-.+++|+.++-
T Consensus 462 ~l~~~~~~~~~~~~R~~avk~an~~fpf~d~ 492 (501)
T PF13001_consen 462 LLLLSYIQSEVRSCRYAAVKYANACFPFSDV 492 (501)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhCCccch
Confidence 1222333455566888889999999987763
No 307
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.42 E-value=23 Score=29.56 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=55.6
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
.++.++++..+++ ..++..|+..+..+....--+- ...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4677888888888 8999999999988876221110 136899999999999999999999999998655443
No 308
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.38 E-value=9.1 Score=35.16 Aligned_cols=73 Identities=7% Similarity=0.038 Sum_probs=61.9
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHH
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~ 365 (454)
+.+..+.+-++..++.|...|+..+..+..++....+..+.+.++..-|..+++ ...+.|+.+.-..+.....
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999988888888888899999998888 6778888877666666655
No 309
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.32 E-value=11 Score=37.18 Aligned_cols=175 Identities=16% Similarity=0.095 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc--C--------CCChhHHHHHHHHHHHhcCCCchhhH
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM--R--------EDYPQLQFEAAWALTNIASGTSENTK 76 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~--~--------~~~~~v~~~a~~~L~~l~~~~~~~~~ 76 (454)
+.+.++...|-..|.++.... -+..++..|..+.. . +-++.+|...+..|++-.. .
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~--------ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------A 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSL--------EDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------A 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCC--------CCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------H
Confidence 344566666666666655442 12234666666665 2 2236777777766665321 0
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHH---HHhhCCChhhHHHHHhcCChHHHHHHhc-------hhhhhhHHHH
Q 012897 77 VVIDHGAVPIFVKLLASP--SDDVREQAVWAL---GNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRN 144 (454)
Q Consensus 77 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~ 144 (454)
.-.....+..+...+.+. +..++..++..+ .......+...-..+...+...+...+. ...+...+..
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 001123444555555555 678888887777 5555433321111111111122222221 2346788999
Q ss_pred HHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
+..+|+.|+...+.. ....-..+..++.-|..+.++++..+-.||..++..
T Consensus 394 aYe~lG~L~~~~p~l-~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 394 AYETLGLLAKRAPSL-FSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHHccCccc-ccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 999999999876433 122356777788778888999999988888888743
No 310
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=84.08 E-value=7.8 Score=30.52 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=55.3
Q ss_pred CcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH-HHHHhcC---CCHHHHHHH
Q 012897 337 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQSH---DNNEIYEKA 411 (454)
Q Consensus 337 ~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~~---~~~~v~~~a 411 (454)
++..|..-+. ..++.++..++..|..+++.+... |...+...+.+.. |.++... .+.+|+.++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 4666666666 468999999999999999877643 6666777778876 7777652 356899999
Q ss_pred HHHHHHhcC
Q 012897 412 VKILETYWL 420 (454)
Q Consensus 412 ~~~l~~~~~ 420 (454)
..+++.+-.
T Consensus 107 l~li~~W~~ 115 (141)
T cd03565 107 LALIQAWAD 115 (141)
T ss_pred HHHHHHHHH
Confidence 999998765
No 311
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.97 E-value=29 Score=31.20 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=48.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-HHHHhcCChHHH----HHHhc-------hhhhhhHHHHHHHHHH
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-DLVLSQGALIPL----LAQLN-------ERAKLSMLRNATWTLS 150 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l----~~~l~-------~~~~~~~~~~a~~~L~ 150 (454)
++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+ ...+. ...+..+...+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999986554432 124445543333 23331 1344567777777777
Q ss_pred hhcC
Q 012897 151 NFCR 154 (454)
Q Consensus 151 ~l~~ 154 (454)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7744
No 312
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.94 E-value=13 Score=33.29 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDHGAVPIFVK----LLA--------SPSDDVREQAVWA 105 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~ 105 (454)
-++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+.-+
T Consensus 119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 36899999999998 9999999999999997333322 33566675554444 333 2445677777777
Q ss_pred HHHhh
Q 012897 106 LGNVA 110 (454)
Q Consensus 106 L~~l~ 110 (454)
+..++
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 77774
No 313
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=81.93 E-value=41 Score=30.68 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCC-----------ChHHHHHhhC------CCCHHHHH
Q 012897 41 VPRFVEFLMRED---YPQLQFEAAWALTNIASGTSENTKVVIDHG-----------AVPIFVKLLA------SPSDDVRE 100 (454)
Q Consensus 41 l~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-----------~i~~L~~lL~------~~~~~v~~ 100 (454)
+..|+..+-..+ .-++|..|+.|+.....++++.+..+++.- ....++..|- +.++--.-
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 444444433322 368999999999999998999888777521 1112333333 12232233
Q ss_pred HHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----
Q 012897 101 QAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH---- 176 (454)
Q Consensus 101 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---- 176 (454)
.|+.+|..+..+++..++.+.+- ........... ...++.+..+|.
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V--------------------------~~~~~~~ge~~----vtliq~v~~lL~~~l~ 165 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRV--------------------------TEGDESSGEEP----VTLIQTVSELLIASLR 165 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT----------------------------EE--STTS------EEHHHHHHHHTTT---
T ss_pred HHHHHHHHHHhcCHHHHHHHHcc--------------------------cCCCCCCCCCc----ccHHHHHHHHHHhhhh
Confidence 45555666655555554443321 00000001111 123333333332
Q ss_pred -CCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC-C--CCcchhhHHHHHhHhhccC
Q 012897 177 -SNDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH-P--SPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 177 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~--~~~v~~~a~~~L~~l~~~~ 239 (454)
+.++.++..-+..|..-...++.....++.. ..++.|+..... + +.-++--++..|+-+-..+
T Consensus 166 ~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 166 RNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp -T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred cCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 3456666666666665555666666667665 478888887533 2 3344555555565555433
No 314
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=81.81 E-value=23 Score=33.04 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=79.3
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----------CCChhHHHHHHHHHHHhccC
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------SNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~v~~~a~~~L~~l~~~ 196 (454)
..+...+.++.....+..++.++.-|+++.....-......++.|..+-+ ..+..+...++.||+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 34555554444455566677777777777644433344445555554432 12457889999999999999
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCC-----CCcchhhHHHHHhHhhcc-CccchhhhhccCChHHHHHhhcC
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHP-----SPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLTH 261 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~ 261 (454)
++...+..++......+.+.+... ...+...-++.|.-+..- .....+.+.+.++++.+.+++.+
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 888878888877777777766321 112222223333222221 22344455566777777777753
No 315
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.80 E-value=16 Score=30.12 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=59.8
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
....+|.++.-|+..+...+--|...+..+... ..+.+-.++. .++..+...|.+.++++...++.+|..++...+.
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 367889999999888888777888888777766 4444444443 6777888889999999999999999999765553
No 316
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.63 E-value=25 Score=28.99 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=53.1
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
..++.+++-|... +...+--|...+..+... ..+.+-.++ ..++..+...|++.++++...++.+|..++.
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4567777777766 555666777677666654 555555555 4578888899999999999999999999954
No 317
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=81.20 E-value=17 Score=34.98 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
...|..|+++|..+++.-..+....+.+ +.|+.+|+++. ..=|..|+.++...+...........-..+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3568899999999998864444443322 26889999988 677788888888887632221111101234566777
Q ss_pred hhCCCC
Q 012897 90 LLASPS 95 (454)
Q Consensus 90 lL~~~~ 95 (454)
.|.++.
T Consensus 176 ~L~~~~ 181 (441)
T PF12054_consen 176 ILENPE 181 (441)
T ss_pred HHcCCC
Confidence 777443
No 318
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=81.19 E-value=43 Score=30.51 Aligned_cols=158 Identities=11% Similarity=0.069 Sum_probs=94.0
Q ss_pred chHHHHHHhh-cCC---ChhHHHHHHHHHHHhccCChHHHHHHHHhC-----------cHHHHHHhcCCC------CCcc
Q 012897 166 PALPALAQLV-HSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAG-----------VCPRLVELLGHP------SPSV 224 (454)
Q Consensus 166 ~~l~~l~~ll-~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----------~i~~L~~ll~~~------~~~v 224 (454)
.++..|+.+. ... .-.+|.+|+.|+.....++++....++..- ....++..|-+. ++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 4444454443 222 467889999999998887776666555431 111244444322 2223
Q ss_pred hhhHHHHHhHhhccCccchhhhhcc------------CChHHHHHhhcC----CcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897 225 LIPALRTVGNIVTGDDFQTQCIITY------------GALPYLLGLLTH----SHKKSIKKEACWTISNITAGNRDQIQA 288 (454)
Q Consensus 225 ~~~a~~~L~~l~~~~~~~~~~~~~~------------~~l~~L~~~L~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 288 (454)
..-|+.+|..+...++..++.+..- ..++.+..+|.. ..++.++..-+..|+-...+++..+..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 4457788888888777665544321 134556665543 336777777788888888889999999
Q ss_pred HHhC-CChHHHHHHhhh---cchhhHHHHHHHHHHhcCC
Q 012897 289 VIDA-GLVGPLVNLLQN---AEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 289 l~~~-~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~ 323 (454)
++.. ..++.|++.... .+.-|+.-++..|+-+...
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 9865 479999997543 2566777777777666553
No 319
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=96 Score=34.14 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc------hhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhc
Q 012897 94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN------ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRP 166 (454)
Q Consensus 94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~------~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 166 (454)
+-.+++...+.++.++....-+ .+.. + -+.+.+.+. ......+.+.+..+|.-++.+. +........+
T Consensus 854 ~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 5567777777888877643221 1211 1 333444432 1234567888888888888876 5556666677
Q ss_pred hHHHHHHhhcC-CChhHHHHHHHHHHHhc
Q 012897 167 ALPALAQLVHS-NDEEVLTDACWALSYLS 194 (454)
Q Consensus 167 ~l~~l~~ll~~-~~~~v~~~a~~~L~~l~ 194 (454)
++..+..+-+. .|-.+--.|+..+.+++
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 77777777653 46666666666666655
No 320
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.41 E-value=20 Score=36.70 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH
Q 012897 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD 284 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~ 284 (454)
.+..|..++..|+.++...+.....+.+..++..|+++|..+.+..+...|+.+|..+.-.-+.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 4568999999999999988888888999999999999998876777888888888888764443
No 321
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=68 Score=32.25 Aligned_cols=282 Identities=12% Similarity=0.110 Sum_probs=144.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 85 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 85 (454)
.+.|+..|..|-++|..+..+ ++. +..-.-++.+++.|--+..|..+|.++..... ....--..++-.
T Consensus 16 ~s~D~~~R~~AE~~L~e~s~s--pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 16 ESTDPTARHRAEKALAELSES--PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred hcCCHHHHHHHHHHHHHHccC--HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 467899999999999988755 332 33344556677667888889999998887332 111112224456
Q ss_pred HHHHhhCCCCHH----HHHHHHHHHHHhhCCCh--hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897 86 IFVKLLASPSDD----VREQAVWALGNVAGDSP--RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--- 156 (454)
Q Consensus 86 ~L~~lL~~~~~~----v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--- 156 (454)
.++..+....|+ +....+..++.+....- ..+....-.+.+..+.+.+ +..+.+--.-++.+|..|..+-
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHHHHHHHhhCC
Confidence 777777764443 34444455555553211 1111112223456666666 3333333344445555554321
Q ss_pred -CCCCh------------hhhhchHHHHHHhhcCC-----Chh----HHHHHHHHHHHhc------cC------------
Q 012897 157 -PQPPF------------DQVRPALPALAQLVHSN-----DEE----VLTDACWALSYLS------DG------------ 196 (454)
Q Consensus 157 -~~~~~------------~~~~~~l~~l~~ll~~~-----~~~----v~~~a~~~L~~l~------~~------------ 196 (454)
+.... .....++..-..+|+.. +++ +...++..-.+.. ..
T Consensus 163 ~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQ 242 (1082)
T KOG1410|consen 163 DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQ 242 (1082)
T ss_pred CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccccccccee
Confidence 00000 01122233333333321 111 2222222211111 00
Q ss_pred -ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc-----CccchhhhhccCChHHHHHhhcCCc---chhH
Q 012897 197 -TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-----DDFQTQCIITYGALPYLLGLLTHSH---KKSI 267 (454)
Q Consensus 197 -~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l~~L~~~L~~~~---~~~v 267 (454)
...-...+.+...++.+..+..+-.+.....++.||..++.- +...+...+. ..+.-...++.++. ++.-
T Consensus 243 IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il~np~~LsD~~n 321 (1082)
T KOG1410|consen 243 IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRILENPQGLSDPAN 321 (1082)
T ss_pred cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCcCCCCcch
Confidence 011122355667788888888888889999999999999852 1111111111 22333334444431 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh
Q 012897 268 KKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 303 (454)
Q Consensus 268 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 303 (454)
-.+-|..|+.+-. .-+..+++.....+.+++++.
T Consensus 322 yHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 322 YHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence 5667777777643 233445666666676776654
No 322
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.90 E-value=84 Score=38.19 Aligned_cols=161 Identities=8% Similarity=0.025 Sum_probs=82.1
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh--Cc--HHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
.....++..++.-+.++++.|+..+..+|.+++.........+++. ++ ++.+..-+....-..+...+.++..+..
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~ 1201 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS 1201 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH
Confidence 3446777788888888999999999999999886653222322221 11 1111111122222333334444444443
Q ss_pred cCccchhh---hh-------------ccCChHHHHHhhcCC---cchhHHHHHHHHHHHHhcCCHHHHH--HHHhCCChH
Q 012897 238 GDDFQTQC---II-------------TYGALPYLLGLLTHS---HKKSIKKEACWTISNITAGNRDQIQ--AVIDAGLVG 296 (454)
Q Consensus 238 ~~~~~~~~---~~-------------~~~~l~~L~~~L~~~---~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~ 296 (454)
..+..... +. +..... +.+..... .....|..+..+++.+....+.... .-...+++.
T Consensus 1202 l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~ 1280 (3550)
T KOG0889|consen 1202 LGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIA 1280 (3550)
T ss_pred cCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHH
Confidence 33321110 00 000001 11111111 0123455666666555542222111 111346778
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 297 PLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 297 ~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
.+...+....+++...+..++.+....
T Consensus 1281 v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1281 VFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 888888888999999999999888664
No 323
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=79.55 E-value=72 Score=32.03 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=54.3
Q ss_pred ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHH
Q 012897 251 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE 327 (454)
Q Consensus 251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 327 (454)
.+..+-.+|.-+ ++.+|+..-.+++-++..+|. -+++..|-++....+.++..++..+++-+-.+.+..
T Consensus 641 ~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq-------~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 641 VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQ-------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCc-------chHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Confidence 456677777778 889999999999988887775 357888888888889999999999888776654433
No 324
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.27 E-value=16 Score=33.89 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred hchHHHHHHhhcCC-------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC----------CCCcchhh
Q 012897 165 RPALPALAQLVHSN-------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH----------PSPSVLIP 227 (454)
Q Consensus 165 ~~~l~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~ 227 (454)
..++|.++.++... +.......+..+..|..+..-..+..+. .+++.++.++-. ..+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45566666666432 5666777777888887776655554444 478888877722 33578999
Q ss_pred HHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcch-hHHHHHHHHHHHH
Q 012897 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNI 278 (454)
Q Consensus 228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~-~v~~~a~~~L~nl 278 (454)
|+.+|+.++........ -+...+...+.+.+.++..+ .....|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999974432221 23345555666666554233 2355566555554
No 325
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.18 E-value=74 Score=32.90 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=138.5
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-C
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-H 81 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 81 (454)
++|+++-...+.++...+-++....+.+ .++. ..+=.|.+....++ ..+|...+++...-- .....+.. .
T Consensus 31 kGlr~~~t~eqpeavvr~~RLFek~Pfp---ifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q~g----~hln~v~n~a 101 (970)
T KOG1988|consen 31 KGLRSGKTSEQPEAVVRFPRLFEKYPFP---IFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQSG----KHLNKVLNGA 101 (970)
T ss_pred hcccccccccchHHHHHHHHHHhhCCch---hhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhhcc----ccchhhhhhh
Confidence 3455555666666666666665553111 1222 23445667777777 677777777766322 22222221 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
.++..+.....+.|+.-|..++.+++.+..--|+ .+..+.++..-..+.++--.+.++.+....+....
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk---- 170 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK---- 170 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh----
Confidence 3344444455668899999999999988654443 33455555544344444445566666666655421
Q ss_pred hhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc
Q 012897 162 DQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 238 (454)
....++...+..++...+ ...+...+.++..+..+.. ....+....++++.. +..+....-+.++++++..
T Consensus 171 ~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasr 244 (970)
T KOG1988|consen 171 DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASR 244 (970)
T ss_pred hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHHHHHH
Confidence 111233334444444332 3445666667777664322 112344556666644 4445555667777787753
Q ss_pred CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
.-. .-.+-...+.+.++.+....++..+.|.+.+++.
T Consensus 245 s~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 245 SLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 221 1225567788888865467788888888877764
No 326
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.69 E-value=45 Score=29.19 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=55.8
Q ss_pred hCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHH
Q 012897 80 DHGAVPIFVKLLASPSDD--------VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLS 150 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~ 150 (454)
+....+.++++++.++.. +-+....++..++ .|-+..+.+++.+ +-+.-++..++.+|.
T Consensus 71 e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 346789999999765432 2222233333333 2345666666643 346778999999999
Q ss_pred hhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 012897 151 NFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA 186 (454)
Q Consensus 151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a 186 (454)
.+....+..+.....-+-..+-..+...+..+....
T Consensus 139 ~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~L 174 (249)
T PF06685_consen 139 FLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSL 174 (249)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHH
Confidence 999887665555544444444444554444433333
No 327
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=78.21 E-value=13 Score=39.79 Aligned_cols=234 Identities=16% Similarity=0.140 Sum_probs=119.8
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH-HHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHH
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTK-VVIDHGAVPIFVKLL--AS--------PSDDVREQAVWAL 106 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~lL--~~--------~~~~v~~~a~~~L 106 (454)
.+.++.|+..+-++. .++|+-+..+++.+......... ...+.- +-.++..+ .. --..+|+.++++|
T Consensus 76 ~s~~e~L~~~~~~~~-we~rhg~~i~lrei~~~h~~~~~~~~led~-~~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQ-WEIRHGAAIALREILKTHGDSLSYELLEDL-LIRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred HHHHHHHHHHhcCch-hhhhcCcchhhhhHHHHhcchhhHHHHHHH-HHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 346777888888888 79999999999988763322111 111211 11121111 11 1146888888888
Q ss_pred HHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHH
Q 012897 107 GNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDA 186 (454)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a 186 (454)
..+..+...... ...+..+.+++.+. .-+++.-.+..+.+...-....-......+++..+..+.+.+..++..|
T Consensus 154 ~~~l~~~~~s~~----~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 154 GAYLKHMDESLI----KETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHHhhhhHhh----HHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 887654322111 11355555655332 2222222222222211100011112234566777888888999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC--cchhhHHHHHhHhhccCcc---chhhhhccCChHHHHHhhcC
Q 012897 187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP--SVLIPALRTVGNIVTGDDF---QTQCIITYGALPYLLGLLTH 261 (454)
Q Consensus 187 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~~L~~ 261 (454)
...+.-+..........-+ ..++..+...+..-+. .-.......+..++...+. ..+.-.+.++++.+...+++
T Consensus 229 a~~l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKI-AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHH-HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 8888776644311111100 1233333333322211 0011111222222222210 01112235888999999998
Q ss_pred CcchhHHHHHHHHHHHHhc
Q 012897 262 SHKKSIKKEACWTISNITA 280 (454)
Q Consensus 262 ~~~~~v~~~a~~~L~nl~~ 280 (454)
. -..++..++.++..+..
T Consensus 308 ~-i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 308 T-ISSVRRAALETLAMLLE 325 (1549)
T ss_pred H-HHHHHHHHHHHHHHHHh
Confidence 8 88899999999888876
No 328
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.12 E-value=28 Score=32.28 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=68.9
Q ss_pred hHHHHHHhchh-----h-hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC----------CChhHHHHHHHH
Q 012897 126 LIPLLAQLNER-----A-KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS----------NDEEVLTDACWA 189 (454)
Q Consensus 126 i~~l~~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----------~~~~v~~~a~~~ 189 (454)
+|.++..+.+. . +.......+..+..|..++...-..+...++|.++.++-. ++..+|..|...
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 55566555321 1 4667777888888888887555556677888988877732 235789999999
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC--cchhhHHHHHhHhh
Q 012897 190 LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP--SVLIPALRTVGNIV 236 (454)
Q Consensus 190 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l~ 236 (454)
+..++........ -+...+...+.+.+.++.. ....-|+..|..+.
T Consensus 292 l~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 292 LAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 9999865332212 2333555566666655432 23555666665553
No 329
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.69 E-value=42 Score=34.98 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=82.1
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-CCC
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-HGA 83 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 83 (454)
+.++++..-...+.++..+..-....... ...-++.-..-.+..- ..+......+|..++...++....+.. .+.
T Consensus 450 ~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~~d~~~ 525 (727)
T PF12726_consen 450 LDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELLSDPDA 525 (727)
T ss_pred hcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHcCcch
Confidence 44566666666666666665443211111 1111222222222222 456777888999999877777766664 689
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
...+..++-+++.++.+.|..+|...... ..|.. .+-.++ +..-........+.+..+...
T Consensus 526 ~~~i~s~lfsp~~~l~qaA~~llk~~~d~--~~R~e--------~i~~ll-~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 526 AQAIWSLLFSPDDDLYQAAQDLLKQAFDV--DGRLE--------AIQALL-QSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred hhHHHhheeCCChHHHHHHHHHHHHHhcC--CcHHH--------HHHHHH-HHhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998742 22222 222333 222334555666666666654
No 330
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.41 E-value=8.7 Score=34.19 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcC--CHHHHHHhhcCC----CChhHHHHHHHHHHHhcCCCchhh-HHHH
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPRFVEFLMRE----DYPQLQFEAAWALTNIASGTSENT-KVVI 79 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~--~l~~L~~lL~~~----~~~~v~~~a~~~L~~l~~~~~~~~-~~~~ 79 (454)
+..+..++-+++.+.|+... ......+.+.. .+-..+..+... + ..++..++..+.|++......+ ..-.
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~ 197 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEW 197 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred CCcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 45788999999999999887 34455444332 233333333333 4 7899999999999975111111 0001
Q ss_pred hCCChHHHHHhh-CC-CCHHHHHHHHHHHHHhhCCChhhHHHH
Q 012897 80 DHGAVPIFVKLL-AS-PSDDVREQAVWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 80 ~~g~i~~L~~lL-~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 120 (454)
....+..+.+.+ .. .+++....++.+++++....+......
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~ 240 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLA 240 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 112355666633 33 689999999999999996665544443
No 331
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=76.93 E-value=50 Score=30.28 Aligned_cols=186 Identities=10% Similarity=0.104 Sum_probs=102.1
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHH-hh---cCC----cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCCh
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLG-LL---THS----HKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~L---~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 295 (454)
+++..++.+.......+.. +. +...+++.++. +| +.. .++++-.-....+..+.....+....+. ..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 5566666666666544422 22 33355666555 33 112 1333433333334444332223333343 2356
Q ss_pred HHHHHHhhhc---chhhHHHHHHHHHHhcCCCCHHHHHHH--HHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhh
Q 012897 296 GPLVNLLQNA---EFDIKKEAAWAISNATSGGTHEQIKYL--VREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE 370 (454)
Q Consensus 296 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~ 370 (454)
...+.++..+ -|+.|..-...|..+...........- .-..++..++-.+++.++++...++.++..++....+.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777653 477887777777777654321111000 00125777788889999999999999999999887761
Q ss_pred hhccCCcccccHHHHHHHHhccHHHHHHH----hcCCCHHHHHHHHHHHHHhcCc
Q 012897 371 KNMGTATADVNQYAQLVEEAEGLEKIENL----QSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
. .++...+-+.-.++.++.+ .........+.-..++..++..
T Consensus 200 ~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 200 N---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred C---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 1 1144444445555555543 4555555566667788888853
No 332
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=76.80 E-value=7.3 Score=35.73 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=59.0
Q ss_pred CCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc-CCCHHHHHHHHHH
Q 012897 336 GCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS-HDNNEIYEKAVKI 414 (454)
Q Consensus 336 ~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~ 414 (454)
+++..|.+-+++.++.|+..++..+..+...+.+. |+..+....+...+..++. +..+.|.++...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHH
Confidence 36888999999999999999999999998877653 4555555666677777776 7788899988888
Q ss_pred HHHhcCc
Q 012897 415 LETYWLE 421 (454)
Q Consensus 415 l~~~~~~ 421 (454)
+..+-++
T Consensus 113 v~eWsee 119 (462)
T KOG2199|consen 113 VKEWSEE 119 (462)
T ss_pred HHHHHHH
Confidence 8877763
No 333
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.64 E-value=28 Score=32.35 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhh
Q 012897 167 ALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCI 246 (454)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 246 (454)
-+.-++..+.+.+.+++..++..|..+..+.+.... .-...+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 355677778899999999999999888766444333 2223577788888888999999998888888665332222222
Q ss_pred hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897 247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 282 (454)
Q Consensus 247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~ 282 (454)
.-.-+++.+...|.+. .+.+|..++..+.-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 2223456677777788 8999999999999888744
No 334
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.40 E-value=1.1e+02 Score=33.91 Aligned_cols=194 Identities=10% Similarity=0.136 Sum_probs=101.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|++.|...|+..+..|+..|.++....+.+....+. .-......++..+++ .++|..+-.++.++...-........+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il-~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~lsp~LK 123 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGIL-PEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLSPFLK 123 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhH-HHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 356678889999999999999998775333322211 001223345666777 999999999999988622222122221
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHHhc------------------hhhhhh
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS--QGALIPLLAQLN------------------ERAKLS 140 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~------------------~~~~~~ 140 (454)
..++..+-...+.+..+...|...+..... ....+....- ..+...+.+.+. +.....
T Consensus 124 -~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R 201 (1312)
T KOG0803|consen 124 -SLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR 201 (1312)
T ss_pred -hhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence 233333333334455555555555555432 1111111111 111112222210 011234
Q ss_pred HHHHHHHHHHhhcCCC-CCCChh----hhhchH--HHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 141 MLRNATWTLSNFCRGK-PQPPFD----QVRPAL--PALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 141 ~~~~a~~~L~~l~~~~-~~~~~~----~~~~~l--~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
+...++.++..+.... ...... ....++ ..+-+++.+..+.++.+...++..++..-.
T Consensus 202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 5556666666555332 111111 112222 355677888888999888888888876543
No 335
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.94 E-value=11 Score=36.33 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=59.0
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cC-CCHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SH-DNNEIYEKAVKI 414 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~-~~~~v~~~a~~~ 414 (454)
++..|.+.+.+.++.++..||..|..+++.+... |...+.+.+++..+..+- ++ .+..|++++..+
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~------------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~L 106 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS------------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILEL 106 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHH
Confidence 5777778888888999999999999999877654 677888888888877664 44 678899999999
Q ss_pred HHHhcC
Q 012897 415 LETYWL 420 (454)
Q Consensus 415 l~~~~~ 420 (454)
|+.+.+
T Consensus 107 I~~W~~ 112 (470)
T KOG1087|consen 107 IDTWQQ 112 (470)
T ss_pred HHHHHH
Confidence 998764
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.31 E-value=20 Score=36.95 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=97.2
Q ss_pred CcHHHHHHcCCHHHHHHhhcCCC-C------hhHHHHHHHHHHHhcCCCchhhHHHHhC--------CChHHHHHhhCC-
Q 012897 30 PPIEEVIQSGVVPRFVEFLMRED-Y------PQLQFEAAWALTNIASGTSENTKVVIDH--------GAVPIFVKLLAS- 93 (454)
Q Consensus 30 ~~~~~~~~~~~l~~L~~lL~~~~-~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 93 (454)
+..+.+...+.+..++++..-+. | .+....|+.+|.-+.. -|..+..+..+ .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 44667778888888888876542 1 2455667777766665 56666666542 245555443322
Q ss_pred ---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchH
Q 012897 94 ---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPAL 168 (454)
Q Consensus 94 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l 168 (454)
-+++++..|+.+|.|+....|.++......-+- ..=-..+...+......+.+.-+++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 379999999999999987666655443211000 00000111222334555555556665554 4678
Q ss_pred HHHHHhhcCC-----ChhHHHHHHHHHHHhccCCh
Q 012897 169 PALAQLVHSN-----DEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 169 ~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~ 198 (454)
.+|+++|.-. -+.++..||.+|.-+++.+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 8888888743 35688999999999987754
No 337
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=74.53 E-value=39 Score=36.48 Aligned_cols=239 Identities=16% Similarity=0.173 Sum_probs=126.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHH-HHHHHhCcHHHHHHh---------cCC-CCCcchhhHHHHHh
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVEL---------LGH-PSPSVLIPALRTVG 233 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~l---------l~~-~~~~v~~~a~~~L~ 233 (454)
.+++..|+.-+-++..++|.-+..+++.+...+.... ...++ ..+-.++.. ..+ --..+|+.++++|+
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~le-d~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLE-DLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHH-HHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 4566677777777778888777777777654322111 11122 111111111 111 12468999999999
Q ss_pred HhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897 234 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 313 (454)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 313 (454)
.+..+.... .-...+..+.+++..+ ..+++......+........+....+. ..+++..++-+++.+.+++..|
T Consensus 155 ~~l~~~~~s----~~~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 155 AYLKHMDES----LIKETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHhhhhH----hhHHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHH
Confidence 988754321 1124567788888877 777776666555544331111111111 2356677777888889999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC------HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHH
Q 012897 314 AWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD------PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLV 387 (454)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 387 (454)
+..+.-.+..........+.. ++..+...+..-+ ..++. .+..++...+. ..-+..+=
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~----ll~~l~~~~ev----------l~l~~~~n 292 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMH----LLDELCIENEV----------LDLFEQQN 292 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHH----HHHHHhhhHHH----------HHHHHHhh
Confidence 988887766431111222211 2222222222111 11111 11111111110 00012222
Q ss_pred HHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCCcc
Q 012897 388 EEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDET 426 (454)
Q Consensus 388 ~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 426 (454)
.+.|.++.+-..+.|.-..++..+...+..+++.++.++
T Consensus 293 ~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~ 331 (1549)
T KOG0392|consen 293 LEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSD 331 (1549)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 224666777777888888888888999988888774433
No 338
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=73.28 E-value=42 Score=27.28 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHHhccCC-----CC---cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 9 DSSLQLEATTQFRKLLSIER-----SP---PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+...+.-++..+..++...+ .+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~ 110 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKL 110 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45677788888888776541 22 3455677788888999888888 8999999999999886 23333221
Q ss_pred -C-CChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHH
Q 012897 81 -H-GAVPIFVK-LLASPS--DDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 81 -~-g~i~~L~~-lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
. =+++.++. ++.+++ ...|..++.++..+|.+..-..+.
T Consensus 111 ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 111 ELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 1 13444444 555433 568888999999999765444333
No 339
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.17 E-value=1.3e+02 Score=31.67 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=87.7
Q ss_pred hchHHHHHHhhcC-CChhHHHHHHHHHHHhccC-----C-hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 165 RPALPALAQLVHS-NDEEVLTDACWALSYLSDG-----T-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 165 ~~~l~~l~~ll~~-~~~~v~~~a~~~L~~l~~~-----~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
...++.++.++.. .++.++..+...|+.+++. . +.....+...+.+..|+..+-.+. .-....+..+..+.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~-~s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG-TSLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC-cchhhHHHHHHHHHH
Confidence 6789999998874 4678888888888888765 3 335555666677777777664422 222223333333332
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCC---hHHHHHHhhhcchhhHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL---VGPLVNLLQNAEFDIKKEAA 314 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~---i~~L~~ll~~~~~~v~~~a~ 314 (454)
.....+..+........+.+-.... ++.+....+.++..-. .+..+.+.+... ++.=...+..+=...|...+
T Consensus 268 ll~~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~ 343 (838)
T KOG2073|consen 268 LLNPRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIV 343 (838)
T ss_pred hcCcccccccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHHH
Confidence 2221111111000111122222222 3344444444433221 111112221111 11111122222234566777
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC
Q 012897 315 WAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP 348 (454)
Q Consensus 315 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~ 348 (454)
..+..+....+....+.+...+.++.+++++...
T Consensus 344 eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 344 ELIAELLHCSNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred HHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 7777777766666666666666666666665543
No 340
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=26 Score=32.55 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=82.6
Q ss_pred ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHH
Q 012897 251 ALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK 330 (454)
Q Consensus 251 ~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 330 (454)
.+.-++..+++. +..+|..|...+..+....+.....-. ..+++.+..++.+.+..+|.....++-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 467799999999 999999999999888765555443222 357788888888889999999999998877655444322
Q ss_pred HHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 331 YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 331 ~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
.+. .=+++.+...+.+..++++.-++..+..++...
T Consensus 137 p~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 111 123555556666777888888888888887765
No 341
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.38 E-value=67 Score=28.14 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=50.2
Q ss_pred cCCHHHHHHhhcCCCCh-------hHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHH
Q 012897 38 SGVVPRFVEFLMREDYP-------QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS--DDVREQAVWALGN 108 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~ 108 (454)
...++.++++++.++.. .+-+....++..++ .|-++.|..++.+++ .-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 34788999999877621 12222233333333 366888888888754 6788999999999
Q ss_pred hhCCChhhHHHHHh
Q 012897 109 VAGDSPRCRDLVLS 122 (454)
Q Consensus 109 l~~~~~~~~~~~~~ 122 (454)
++...+..|+.+.+
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 99888877887654
No 342
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=71.54 E-value=74 Score=28.29 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=89.1
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
.+++.-|...++..++..+ .+..+++. -.++..+++|.|...- .++.+...+++.|.+|+.--+ .
T Consensus 12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~---------~~iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~P~~--~- 76 (266)
T PF04821_consen 12 LECLKDLKRFLRRDDEDQR-DVRRQLGE---------WNIVQKDLIPILISYK--DDDKLFLACLRLLVNLTWPIE--L- 76 (266)
T ss_pred HHHHHHHHHHHHHhCcchH-HHHHHHHH---------hchhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCCCHH--H-
Confidence 3566677777877766655 44444432 1244445666555543 367788999999999985211 1
Q ss_pred hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh-----------hcchhhHHHH
Q 012897 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ-----------NAEFDIKKEA 313 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----------~~~~~v~~~a 313 (454)
+.+ - .+.+...+.........+. .....+.+.+++..++..+. ..+..+.+.+
T Consensus 77 -~~~--~---------~~~~~~~~~~~~~l~~~l~----~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lv 140 (266)
T PF04821_consen 77 -LVE--S---------QPKDKNQRRNIPELLKYLQ----SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELV 140 (266)
T ss_pred -hcc--C---------CCCChHHHHHHHHHHHHHH----HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHH
Confidence 000 0 0001111111111111111 11122222333333333321 1245566777
Q ss_pred HHHHHHhcCCCC---------------HHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHh
Q 012897 314 AWAISNATSGGT---------------HEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV 366 (454)
Q Consensus 314 ~~aL~~l~~~~~---------------~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~ 366 (454)
+..+.|++...+ ......|.++|+...|+.+.++. ..+.....++++..+++.
T Consensus 141 L~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 141 LTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 777888776521 12334556788899999888876 334445778888888764
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.49 E-value=1.2e+02 Score=30.43 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=82.2
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897 46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS 122 (454)
Q Consensus 46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 122 (454)
..+..-. ++.+.-|+.+|+-+..+.......+. .+.++..++..+. .++.-+-.++++|.|+..+ +..++.+..
T Consensus 551 ~~l~~wp-~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s 627 (745)
T KOG0301|consen 551 AILLQWP-VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMS 627 (745)
T ss_pred HHHhcCC-HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHH
Confidence 3333444 57778888888877764433332222 1234445555444 5577778899999999766 555555443
Q ss_pred cCChHHHHHHhc---hhhhhhHHHHHHHHHHhhcCC--CCCCChhhhhchHHHHHHhh----cC-CChhHHHHHHHHHHH
Q 012897 123 QGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRG--KPQPPFDQVRPALPALAQLV----HS-NDEEVLTDACWALSY 192 (454)
Q Consensus 123 ~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~l~~l~~ll----~~-~~~~v~~~a~~~L~~ 192 (454)
. ...++..+. ..++..++........|++-- ....+ .+..+.+...+ .. .+-+.....+.+|++
T Consensus 628 ~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Algt 701 (745)
T KOG0301|consen 628 R--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGT 701 (745)
T ss_pred H--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 2 222322221 122233333332222222211 11111 22333333332 21 233456677888888
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCC
Q 012897 193 LSDGTNDKIQAVIEAGVCPRLVELLGH 219 (454)
Q Consensus 193 l~~~~~~~~~~~~~~~~i~~L~~ll~~ 219 (454)
++...+.. ..+...--+..++..+++
T Consensus 702 L~t~~~~~-~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 702 LMTVDASV-IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred hccccHHH-HHHHHhcCHHHHHHHHHH
Confidence 88776544 334444456666666544
No 344
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.48 E-value=1.3e+02 Score=30.51 Aligned_cols=315 Identities=15% Similarity=0.132 Sum_probs=150.8
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 84 VPIFVKLL-ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 84 i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
++.+++-| .+.++.-|..|=..|..++ .+|++ +....-++.++..+--.--|..+|..+..........
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s-~spec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELS-ESPEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-cCHHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 45555544 3577888888888888885 44444 2222223334455555666667777777665434444
Q ss_pred hhhchHHHHHHhhcCCChh----HHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897 163 QVRPALPALAQLVHSNDEE----VLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~----v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 235 (454)
..-.+-..+++.+.+..|+ +....+..++.+... .....+..++ +.+..+.+.++.++.+-..-++.+|..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FR-d~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFR-DPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhh-hhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 4445566777888776554 444444455555432 1111122232 6677788888887776666677777777
Q ss_pred hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC--CHHHHHHHHhCCChHHHHHHhhhc-chhh---
Q 012897 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG--NRDQIQAVIDAGLVGPLVNLLQNA-EFDI--- 309 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~~L~~ll~~~-~~~v--- 309 (454)
+..-.. ........--..+..-+.+..-.++-.-|+..|...... +.+.. .|.+..++.+--.. +.+.
T Consensus 156 vqemN~-~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q-----~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 156 VQEMNQ-ADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQ-----LGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHhhC-CCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhH-----hhHHHHHHHHHhhhcccccccc
Confidence 642110 000000001112222222221223333444444333311 11111 12222222211000 0000
Q ss_pred -HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHH
Q 012897 310 -KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE 388 (454)
Q Consensus 310 -~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 388 (454)
-.+...-+++.-. +...+..+.+...+..+.++..+-.+..-..++.||..+.......- +.. .-..|...+.
T Consensus 230 s~DEssed~ctVQI--PTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLF---N~a-eRa~yl~~Lv 303 (1082)
T KOG1410|consen 230 STDESSEDLCTVQI--PTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLF---NGA-ERAKYLQHLV 303 (1082)
T ss_pred ccccccccccceec--CcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh---CCH-HHHHHHHHHH
Confidence 0000000111111 22233445555667777888888888888888888888765433211 000 1112333333
Q ss_pred HhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897 389 EAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 389 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
.|..+.|++=+.-.++.-+..-..++.++-...
T Consensus 304 -~Gvk~il~np~~LsD~~nyHeFCRllaRlktNY 336 (1082)
T KOG1410|consen 304 -EGVKRILENPQGLSDPANYHEFCRLLARLKTNY 336 (1082)
T ss_pred -HHHHHHHhCCcCCCCcchHHHHHHHHHHHHhhh
Confidence 455555555455555666665566666654433
No 345
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=70.45 E-value=94 Score=29.03 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHh
Q 012897 95 SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQL 174 (454)
Q Consensus 95 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l 174 (454)
+..-++.|...+.+...+-|..... ++..-+.++ .+.+..++++|+.-|-.+|.++ ....+.+.|+++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 3444555666666665554443333 345555666 6677888899988888888773 112233344444
Q ss_pred hc------------CCChhHHHHHHHHHHH-hccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 175 VH------------SNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 175 l~------------~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
|. ..|..++..++..|.. +..-.++....-++..++..+...|.+-..+--...+..|+++......
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k 184 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTK 184 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCC
Confidence 32 2366777777766653 3333333333444445555555555554333334455556665543311
Q ss_pred c-hhhhhcc-CChHHHHHh--hcCCcchhHHHHHHHHHHH----HhcCCHHH-HHHHHhCCChHHHHHHhhhcchhhHHH
Q 012897 242 Q-TQCIITY-GALPYLLGL--LTHSHKKSIKKEACWTISN----ITAGNRDQ-IQAVIDAGLVGPLVNLLQNAEFDIKKE 312 (454)
Q Consensus 242 ~-~~~~~~~-~~l~~L~~~--L~~~~~~~v~~~a~~~L~n----l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~~ 312 (454)
. ...+.+. ....-+..+ +.-. +++....-..|+.. ++.+.+.. .-..+...++|.- ......+.+..
T Consensus 185 ~~~a~lqeLa~~~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~---fdkl~e~rkL~ 260 (460)
T KOG2213|consen 185 AGEARLQELAEEQEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH---FDKLTEERKLD 260 (460)
T ss_pred CCHHHHHHHHHHHhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccc---cccchHHHHHH
Confidence 1 1111100 000000000 2222 33444333333332 22332221 1122234444441 11113567778
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC
Q 012897 313 AAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV 346 (454)
Q Consensus 313 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~ 346 (454)
.+.+|..|+...+.+.... .++.++++|.
T Consensus 261 lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk 289 (460)
T KOG2213|consen 261 LLKALAEMSSYTTAQAARQ-----MLPSIVELLK 289 (460)
T ss_pred HHHHHHHhCccchHHHHHH-----HHHHHHHHHH
Confidence 8889999988765444433 3444444443
No 346
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.14 E-value=70 Score=32.03 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCc--HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPP--IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 87 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 87 (454)
++.+.-|+..|+-+..+..... ......+..+..++..+. .+ +..+..++++|.|+.. ++..++.+... ...+
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~-~an~ll~vR~L~N~f~-~~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-AD-PANQLLVVRCLANLFS-NPAGRELFMSR--LESI 632 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cc-hhHHHHHHHHHHHhcc-CHHHHHHHHHH--HHHH
Confidence 4456667766666665541111 111122345556666655 44 7788999999999998 46666666543 2333
Q ss_pred HHhh----CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHH----hchhhhhhHHHHHHHHHHhhcCCC
Q 012897 88 VKLL----ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQ----LNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 88 ~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~----l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
...+ ..++..++........|++-. ..+.-.+.+..+.+... +..-.+-+.....+.+|.+|+..+
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 3322 224456665555555554310 00000112233333333 222234445666777888887764
No 347
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=70.12 E-value=31 Score=33.28 Aligned_cols=307 Identities=14% Similarity=0.158 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhhCCChhh-HHHHHhcCChH-HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh-hhchHHHHH
Q 012897 96 DDVREQAVWALGNVAGDSPRC-RDLVLSQGALI-PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ-VRPALPALA 172 (454)
Q Consensus 96 ~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l~ 172 (454)
...|..++.+|+.++..-+.. ... ... .|+..| .+....-+..++.++...+.......... ...+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 455778888999887543221 111 123 466677 55666666677777777776542111111 345566777
Q ss_pred HhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH-----HHHHhcC---CCCCc--chhhHHHHHhHh----hcc
Q 012897 173 QLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP-----RLVELLG---HPSPS--VLIPALRTVGNI----VTG 238 (454)
Q Consensus 173 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-----~L~~ll~---~~~~~--v~~~a~~~L~~l----~~~ 238 (454)
.+|..+.+..=......+..+-.........+.+.|.++ .|-...+ ...+. -...|-.+.... ...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 777754332222233333333333333444444545422 1211111 11111 112222222211 110
Q ss_pred Cc-cchh---hhhcc--CChHHHHHhhc---CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chh
Q 012897 239 DD-FQTQ---CIITY--GALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFD 308 (454)
Q Consensus 239 ~~-~~~~---~~~~~--~~l~~L~~~L~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~ 308 (454)
-. ..+. ..++. .-+..-+...+ ...+..|+..++.++..+..- |+.. ..+|..|++-++.+ +..
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Een~~ 328 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREENEL 328 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccccHH
Confidence 00 0000 00000 00011111111 111333444444445444332 2211 34677788888765 889
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC---CHHHH--HHHHHHHHHHHHhhhhhhhccCCcccccHH
Q 012897 309 IKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRIV--TVCLEGLENILKVGEAEKNMGTATADVNQY 383 (454)
Q Consensus 309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~--~~al~~L~~l~~~~~~~~~~~~~~~~~~~~ 383 (454)
++..++.+|..+..... . .+.=-...++..|+.++-.+ .|.+. ...-..+..+.+.................-
T Consensus 329 LQ~rsA~slA~Li~~~~-~-rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~ 406 (441)
T PF12054_consen 329 LQQRSAESLARLIQLCV-D-RKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQK 406 (441)
T ss_pred HHHHHHHHHHHHHHHHh-C-CCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhh
Confidence 99999999988865321 0 00000112455555555321 12211 111122222222111100000000011223
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897 384 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (454)
...+.+-|+...|..|...-.+++.++.-++.+
T Consensus 407 ~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw~ 439 (441)
T PF12054_consen 407 EARIQRRGAELALEQLAKRFGSSLFEKLPKLWE 439 (441)
T ss_pred hhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHHh
Confidence 446889999999999999988888877665544
No 348
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=70.07 E-value=8.5 Score=27.27 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=43.0
Q ss_pred hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHH
Q 012897 122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALS 191 (454)
Q Consensus 122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~ 191 (454)
+...+.++..++....+.++++..+.++.++.......-..-...++..+-....++++.+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3345778888876777889999999999999876421111112233333444444556777776666553
No 349
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.65 E-value=43 Score=35.66 Aligned_cols=137 Identities=9% Similarity=-0.014 Sum_probs=87.0
Q ss_pred hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCCh
Q 012897 48 LMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQGAL 126 (454)
Q Consensus 48 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i 126 (454)
.++-. +++|..++..|+-... ..-..+++...+.++-..|.+.+.+||..++.+|-.|...... .+-..+-...=
T Consensus 296 YRDV~-~~IRaiCiqeLgiWi~---~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 296 YRDVD-PDIRAICIQELGIWIK---SYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred cccCc-hHHHHHHHHHHHHHHH---hccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 34455 8999999999988876 3345677888999999999999999999999999999855221 11111111222
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 193 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l 193 (454)
..++++...+-+..|+...+..+..+.... .....-+-.+..++-+.++.++..+...+..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 344444434455666666665555443321 11122234556677777777777777766543
No 350
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=69.62 E-value=33 Score=31.00 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=64.4
Q ss_pred hCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCH-HHHHHHHHcCCcHHHhhccCCCC---HHHHHHHHHHHHHHH
Q 012897 291 DAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTH-EQIKYLVREGCIKPLCDLFVCPD---PRIVTVCLEGLENIL 364 (454)
Q Consensus 291 ~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~i~~L~~~l~~~~---~~v~~~al~~L~~l~ 364 (454)
+.|++..++..+... +...|-..+.++-.+.++.+. ....++.+.|+++.++..+-++. ..+.+...+.|+.++
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 467888888888764 677888999999999998877 56668889999999999766543 468889999999999
Q ss_pred Hhhhhh
Q 012897 365 KVGEAE 370 (454)
Q Consensus 365 ~~~~~~ 370 (454)
+.....
T Consensus 173 K~n~~~ 178 (303)
T PF12463_consen 173 KFNRDA 178 (303)
T ss_pred CCCHHH
Confidence 876653
No 351
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=69.31 E-value=1.3e+02 Score=30.30 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=49.7
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh-------hHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSEN-------TKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNV 109 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l 109 (454)
.+-++.+++-+++++ ++++..|+..+......+... .+.+.. -...|.....+ .++..+..++.+|+-|
T Consensus 47 k~dLellVervqdpd-~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 47 KGDLELLVERVQDPD-PDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 456899999999999 999999999999887633221 222221 12333333333 5577888889999988
Q ss_pred hCCC
Q 012897 110 AGDS 113 (454)
Q Consensus 110 ~~~~ 113 (454)
|-..
T Consensus 124 amt~ 127 (878)
T KOG2005|consen 124 AMTM 127 (878)
T ss_pred heee
Confidence 8443
No 352
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.09 E-value=90 Score=30.56 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-------hhhhhHHHHHHHHHHhhcCCCCC
Q 012897 86 IFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-------RAKLSMLRNATWTLSNFCRGKPQ 158 (454)
Q Consensus 86 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~ 158 (454)
.+.+.+-+.++..+..|+..|..=+ .... .++.++.++.. ..+-......+..++.|..++..
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~TDs----GL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLETDS----GLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhccCc----cHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3333444456666666665554321 1111 24455555432 13567788888899999988655
Q ss_pred CChhhhhchHHHHHHhhcC----------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchh
Q 012897 159 PPFDQVRPALPALAQLVHS----------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLI 226 (454)
Q Consensus 159 ~~~~~~~~~l~~l~~ll~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 226 (454)
.-..+...++|.++.++-+ +...+|.-+...+..++.+....... +...+...+...+.++ ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 5556678888888877643 23557888888888888776555443 5557777777777664 344556
Q ss_pred hHHHHHhHhh
Q 012897 227 PALRTVGNIV 236 (454)
Q Consensus 227 ~a~~~L~~l~ 236 (454)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 6666666554
No 353
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=69.06 E-value=6.6 Score=28.97 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHH
Q 012897 57 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVRE 100 (454)
Q Consensus 57 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~ 100 (454)
....+..+..++. .|+.-..+++.|+++.|+.+|.++|.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3556778888888 788999999999999999999998877643
No 354
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=68.65 E-value=22 Score=27.92 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHhcCCC-chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHh
Q 012897 55 QLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQL 133 (454)
Q Consensus 55 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 133 (454)
-++...+.++..++... |+.- .++++.+++.+.+ ++......+.+|..+..+-... ..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~-----~~---------- 61 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF-----RR---------- 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS-----HC----------
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh-----hc----------
Confidence 45666777777777521 1111 2456777777766 4666666676666664211100 00
Q ss_pred chhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 012897 134 NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSND----EEVLTDACWALSYLSDGTNDKIQAVIEAGV 209 (454)
Q Consensus 134 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 209 (454)
......-+...-..+..- ...++..+.+.+.... ..+...++.++.......+ ...+...++
T Consensus 62 -~~~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~ 127 (148)
T PF08389_consen 62 -SSLSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNL 127 (148)
T ss_dssp -CHSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSH
T ss_pred -hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHH
Confidence 000001111111111111 1233444445444322 7778888888888776443 345666778
Q ss_pred HHHHHHhcCCCCCcchhhHHHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRTV 232 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L 232 (454)
++.+..++ .++.++..|+.||
T Consensus 128 l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 128 LNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHhC
Confidence 88888888 4445688887775
No 355
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.43 E-value=85 Score=33.58 Aligned_cols=138 Identities=9% Similarity=0.009 Sum_probs=88.3
Q ss_pred cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH
Q 012897 260 THSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK 339 (454)
Q Consensus 260 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~ 339 (454)
++- .+.+|..+...|+-.+...|+ .+++...+..+=-.|.+.+..||..++.+|..+.........-.+..+.+-.
T Consensus 297 RDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 445 789999999999988876565 4566667777777888899999999999999998863322222222334556
Q ss_pred HHhhcc-CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 340 PLCDLF-VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 340 ~L~~~l-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
.++++. ...+..|+...+.........+ .+. ..-+..+-.+.-+.+++++..|...+..-
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g------------------~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG------------------LLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc------------------ccC-hhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 677776 3344555554443333322111 111 12234566778888888888887766554
Q ss_pred cC
Q 012897 419 WL 420 (454)
Q Consensus 419 ~~ 420 (454)
+.
T Consensus 434 ~~ 435 (1048)
T KOG2011|consen 434 LF 435 (1048)
T ss_pred hh
Confidence 43
No 356
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=68.33 E-value=24 Score=27.05 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=58.7
Q ss_pred cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc---CCCCHHHHHHHHHHHHHHHHhhhhhhhccCCccccc
Q 012897 305 AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF---VCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVN 381 (454)
Q Consensus 305 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 381 (454)
++.......+.-|...+... ..+.. ++..|...+ +.+++.+..+++..|..++..+...
T Consensus 15 d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------- 76 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------- 76 (125)
T ss_dssp SSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-----------
T ss_pred CCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-----------
Confidence 34445555666677776643 33333 466666766 5677889999999999999987653
Q ss_pred HHHHHHH-HhccHHHHHHHhc--C----CCHHHHHHHHHHHHHhcCcC
Q 012897 382 QYAQLVE-EAEGLEKIENLQS--H----DNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 382 ~~~~~l~-~~g~~~~l~~l~~--~----~~~~v~~~a~~~l~~~~~~~ 422 (454)
|..-++ ....++.+.++.. . ....|+.+|..+++-+.+++
T Consensus 77 -~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 77 -FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp -HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred -HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 344442 2233344443322 1 12359999999998776643
No 357
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=68.08 E-value=25 Score=27.85 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=80.5
Q ss_pred CchhhHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC--ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHH
Q 012897 71 TSENTKVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGD--SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATW 147 (454)
Q Consensus 71 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 147 (454)
+++.-+.+.+.+++..+++.++. ....++.+.+.++.-+... ++..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45677888888999999999987 6677877777777666532 22222334455566666665445567888888888
Q ss_pred HHHhhcCCCCCCChh--h-----hhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 148 TLSNFCRGKPQPPFD--Q-----VRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 148 ~L~~l~~~~~~~~~~--~-----~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
.|..++..-...... . .-+....-+++..+++.-+|.++-..+.++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 888887654222211 1 1223344556777888888887776666543
No 358
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=67.87 E-value=28 Score=33.89 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=57.4
Q ss_pred HHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCC------------CHHHHHHHHHcCCcHHHhhccC-CCCHH
Q 012897 286 IQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGG------------THEQIKYLVREGCIKPLCDLFV-CPDPR 351 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~------------~~~~~~~l~~~~~i~~L~~~l~-~~~~~ 351 (454)
..-+.+.++++.|+.++... ++.++.+|+..|..+.... +.+....+.+...+..|++.+= .....
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s 134 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGS 134 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcc
Confidence 33344789999999999753 7789999998887775532 2344566667777888777443 23355
Q ss_pred HHHHHHHHHHHHHHhhh
Q 012897 352 IVTVCLEGLENILKVGE 368 (454)
Q Consensus 352 v~~~al~~L~~l~~~~~ 368 (454)
....++..+..+++...
T Consensus 135 ~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 135 SLVNGVSILIELIRKNN 151 (475)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 66677788888887653
No 359
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=66.90 E-value=27 Score=26.22 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=52.0
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhc----c--CCCCHHHHHHHHHHHHHH
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL----F--VCPDPRIVTVCLEGLENI 363 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~----l--~~~~~~v~~~al~~L~~l 363 (454)
++..|..-+.+.++.++..|+..|-.+..++.+.....+.+..++..++.. . ...+..|+..++..+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666777778999999999999999999988888887777666666542 1 123567888887776554
No 360
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=66.35 E-value=56 Score=31.86 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=75.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcCCCchhhHH
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENTKV 77 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (454)
+-++|+..+..|+..|.. ..-... .+|.++.++..+ ++-.+....++..+.|.. ++...-.
T Consensus 216 ~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~le 283 (576)
T KOG2549|consen 216 CTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLE 283 (576)
T ss_pred HhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchh
Confidence 344566666666655532 112222 366677666543 225667777888888887 6655544
Q ss_pred HHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchh-hhhhHHHHHH
Q 012897 78 VIDHGAVPIFVKLLAS----------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNER-AKLSMLRNAT 146 (454)
Q Consensus 78 ~~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~ 146 (454)
-.-+.++|.++.++-+ ....+|..|+..+..+|..-.....- ....++..+.+.+.+. .......-++
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai 362 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAI 362 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence 4445678888887743 23568888998888888543322121 2333455555555333 2333444444
Q ss_pred HHHHhhc
Q 012897 147 WTLSNFC 153 (454)
Q Consensus 147 ~~L~~l~ 153 (454)
..|..|.
T Consensus 363 ~gL~~lg 369 (576)
T KOG2549|consen 363 AGLSELG 369 (576)
T ss_pred HHHHHhh
Confidence 4444443
No 361
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=66.14 E-value=19 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhc
Q 012897 384 AQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETYW 419 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~ 419 (454)
.+.+.+.+.-..+..+..+ ++++++..|..++..+-
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 5678888888999999888 99999999999998753
No 362
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=65.21 E-value=1.1e+02 Score=27.78 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=57.6
Q ss_pred hchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChH--HHHHHHHhCcHHHHHHhcCCCC---CcchhhHHHHHhHhhc
Q 012897 165 RPALPALAQLVHSN--DEEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLGHPS---PSVLIPALRTVGNIVT 237 (454)
Q Consensus 165 ~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~ 237 (454)
.|.+..++..+... +...+-+.+.|+-...+..+. ....+.+.|+++.++..+-++. ..+.......||.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56777777766543 566788888888888776554 3345778899999999886543 3578889999999998
Q ss_pred cCccc
Q 012897 238 GDDFQ 242 (454)
Q Consensus 238 ~~~~~ 242 (454)
++...
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87643
No 363
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.52 E-value=10 Score=34.47 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897 59 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVL 121 (454)
Q Consensus 59 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 121 (454)
+..+.++++|...++..+.+.+.|+++.++.-. ++.+|-+++..+.++.+|..++.++++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 356789999999999999999999999988743 457899999999999999988877766554
No 364
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=61.88 E-value=2e+02 Score=29.68 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 89 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 89 (454)
++++..++..+..++.+. ++.- ..++..++.-|.+++ ..+...|...|.+|....|..+..+ +..+..
T Consensus 318 ~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer 385 (988)
T KOG2038|consen 318 EEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDEIER 385 (988)
T ss_pred HHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHH
Confidence 688889999999998875 3222 235677888888888 6888888888888888777766444 344555
Q ss_pred hhCCCC--HHHHHHHHHHHHHhh
Q 012897 90 LLASPS--DDVREQAVWALGNVA 110 (454)
Q Consensus 90 lL~~~~--~~v~~~a~~~L~~l~ 110 (454)
++-.++ ....-.|+.+|..+.
T Consensus 386 ~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 386 LAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHcccCccccceeehhhhhhhhH
Confidence 554443 334445666666654
No 365
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=61.72 E-value=1.8e+02 Score=29.06 Aligned_cols=102 Identities=7% Similarity=-0.091 Sum_probs=69.7
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccch--hhhhccCC
Q 012897 174 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGA 251 (454)
Q Consensus 174 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~ 251 (454)
-..+-++.++..+...|+.-+..-|+. +.+-.++...-..|.+.+..+|.....++-.++...+... ..+. ..+
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~-eRF 358 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV-ERF 358 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH-HHH
Confidence 334456777777777777666554533 4444466667777888899999999999999998766332 1122 256
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
...+++++..+ ..-||..+...+..+..
T Consensus 359 k~rILE~~r~D-~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 359 KDRILEFLRTD-SDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHhhc-cchhhHHHHHHHHHHHH
Confidence 67788888777 44488888877776654
No 366
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=61.15 E-value=45 Score=24.79 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=52.7
Q ss_pred CChHHHHHhhcCCc---chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCC
Q 012897 250 GALPYLLGLLTHSH---KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 250 ~~l~~L~~~L~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 324 (454)
|++..+...+.+.+ ...-|+.+..++..+..-....+ ..+.|.++..|++. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45566666665552 33458888888888776322222 23567777777763 7789999999998888766
Q ss_pred CHHHHHHHHH
Q 012897 325 THEQIKYLVR 334 (454)
Q Consensus 325 ~~~~~~~l~~ 334 (454)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6665555443
No 367
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=60.68 E-value=1.5e+02 Score=29.57 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh--hhhchHHHH
Q 012897 94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD--QVRPALPAL 171 (454)
Q Consensus 94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l 171 (454)
-++.+|..++..++-.+..-|. .+....++...-..| .+.+..++.....++..|+...+..... ....+-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 5677888888888777665553 233333455555566 6778899999999999999987665522 235566677
Q ss_pred HHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 172 AQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 172 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
+.++..+..-||..++..+..+..-. .++..-+..+..++-+..++-+......+.++|.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 88887776668888888877654221 2222334455566666666655544445555553
No 368
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=60.45 E-value=41 Score=23.05 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=30.2
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 384 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
.+.+...+.-..+..+..|++++|...|..++..+-
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 566777777788899999999999999999988653
No 369
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.15 E-value=2.2e+02 Score=29.73 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=69.2
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
+...+...+..+++.+....+.++.++.......... ...-...-..-.+..-..+.....++|.++....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~------ 512 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFD------ 512 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 3445556666667777777777777776532111100 0001111111111111234444555555555543
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
.+....++.+.+....+-.+.=++++++++.|..++...++.+
T Consensus 513 ------~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 513 ------PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred ------HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 3346788999999999999999999999999999999999744
No 370
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=59.99 E-value=2.1e+02 Score=29.44 Aligned_cols=294 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
+|.-++.-+..|............+.+.+.+....+.+++..-. .++...--....++.....+.....+.. .++.++
T Consensus 264 kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~g-vel~~i~s~lnseld~~~kqn~l~~ll~-~vpyll 341 (980)
T KOG2021|consen 264 KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFG-VELTIIISQLNSELDTLYKQNVLSILLE-IVPYLL 341 (980)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcc-eeeehhHhhhhhccCHHHHHHHHHHHHH-HHHHHH
Q ss_pred HhhCCCCHHHHHHHHHHHHHhh-----CCChhhHHHHHhcCChHHHHHHhchhh----------------hhhHHHHHHH
Q 012897 89 KLLASPSDDVREQAVWALGNVA-----GDSPRCRDLVLSQGALIPLLAQLNERA----------------KLSMLRNATW 147 (454)
Q Consensus 89 ~lL~~~~~~v~~~a~~~L~~l~-----~~~~~~~~~~~~~~~i~~l~~~l~~~~----------------~~~~~~~a~~ 147 (454)
++|.+...++-......+.... ...-.......-...+..+.+.+..++ ..++|...--
T Consensus 342 q~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~ 421 (980)
T KOG2021|consen 342 QFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKN 421 (980)
T ss_pred HHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcH------HHHHHhcCC--
Q 012897 148 TLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC------PRLVELLGH-- 219 (454)
Q Consensus 148 ~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i------~~L~~ll~~-- 219 (454)
.+..+..-+|..-.......+..-+..-..++....+.|++-+.++++.-....-..-+..+. ..+.-++++
T Consensus 422 fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv 501 (980)
T KOG2021|consen 422 FQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQV 501 (980)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccc
Q ss_pred CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh------cCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCC
Q 012897 220 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL------THSHKKSIKKEACWTISNITAGNRDQIQAVIDAG 293 (454)
Q Consensus 220 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L------~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 293 (454)
...+.+.-.+..+..+++ ...-.-.+...+|.++..+ .+. +..||..|.+...++...-....-.+++.
T Consensus 502 ~~h~h~lVqLlfmE~ivR---Y~kff~~esq~ip~vL~aFld~rglhn~-ne~Vr~RawYLF~RfVKlLkkqlvpfie~- 576 (980)
T KOG2021|consen 502 LAHDHELVQLLFMELIVR---YNKFFSTESQKIPLVLNAFLDSRGLHNK-NENVRLRAWYLFTRFVKLLKKQLVPFIEE- 576 (980)
T ss_pred ccCCchHHHHHHHHHHHH---HHHHHhcchhhhHHHHHHHccchhcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred ChHHHHHHhhhcchhh
Q 012897 294 LVGPLVNLLQNAEFDI 309 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v 309 (454)
++..+-++++...+..
T Consensus 577 iln~iqdlL~~~vtt~ 592 (980)
T KOG2021|consen 577 ILNKIQDLLHIKVTTI 592 (980)
T ss_pred HHHHHHHHHcCcCCCc
No 371
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.55 E-value=2.4e+02 Score=29.81 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
-+.+.....++.++.++....++.++..|...|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 345556678999999998777888999998888888877
No 372
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=59.36 E-value=39 Score=26.76 Aligned_cols=125 Identities=10% Similarity=0.129 Sum_probs=83.1
Q ss_pred CChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhcc--CccchhhhhccCChHHHHHhhcCCcchhHHHHHH
Q 012897 196 GTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTG--DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEAC 272 (454)
Q Consensus 196 ~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~ 272 (454)
+++...+.+++..++..+..+++. ....++.+.+.+++-+..+ ++.....++.++.+..++..--+-.+.++...=.
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 445567788888999999999977 5677888888888888764 3334455677777777776554443667777777
Q ss_pred HHHHHHhc-CCHHHHHHHHh--CCChHH---HHHHhhhcchhhHHHHHHHHHHh
Q 012897 273 WTISNITA-GNRDQIQAVID--AGLVGP---LVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 273 ~~L~nl~~-~~~~~~~~l~~--~~~i~~---L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
..|..++. -+++..+.+.+ .+-.|. -++++.+++.-+|..+...+.++
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 77777775 23444444442 234444 44556667777777666666554
No 373
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=57.67 E-value=1.9e+02 Score=28.25 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897 327 EQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400 (454)
Q Consensus 327 ~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 400 (454)
.....+.+.++++.|+..|+ ..++.++..|...|..+++...+.....+..-.++.....+.....+++|...+
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~m 127 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIM 127 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHH
Confidence 44566677899999999997 455778889999999998877644322111114577888888888888886653
No 374
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=56.90 E-value=1.6e+02 Score=27.04 Aligned_cols=178 Identities=11% Similarity=0.117 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHH-hhc----C----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 012897 141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVH----S----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 211 (454)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~-ll~----~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 211 (454)
+++..+..+.......+... .....++|.++. +|. + .++++.......+..+.....+....+++ .++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~-~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPE-EVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HH-HHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 44455555555544432222 233455665554 332 1 24556555555555555443444455555 5667
Q ss_pred HHHHhcCCC---CCcchhhHHHHHhHhhccCccchhhhhc---cCChHHHHHhhcCCcchhHHHHHHHHHHHHhc----C
Q 012897 212 RLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCIIT---YGALPYLLGLLTHSHKKSIKKEACWTISNITA----G 281 (454)
Q Consensus 212 ~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~----~ 281 (454)
..+.++..+ -|+.|..-...|..+...+....-.+-. ..++..+...+++. +.++...++.++..+.. .
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHhc
Confidence 777777553 4677887777777777654322111100 13566777778888 99999999998887765 2
Q ss_pred CHHHHHHHHhCC---ChHHHHHHhhhc-chhhHHHHHHHHHHhc
Q 012897 282 NRDQIQAVIDAG---LVGPLVNLLQNA-EFDIKKEAAWAISNAT 321 (454)
Q Consensus 282 ~~~~~~~l~~~~---~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 321 (454)
+++....+.+.- ++..++..+.+. +...-..-+..|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 345444554433 333344444443 2223333345555554
No 375
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.62 E-value=43 Score=34.97 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHhchhhhhhHHHHHHHHHHhhc---CCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 012897 129 LLAQLNERAKLSMLRNATWTLSNFC---RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 205 (454)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 205 (454)
-..+| .+++..++..++.+|..-. ...++.-........|.++..+...|+-+...|+.++.+++....+....-+
T Consensus 808 ~~~~L-S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~ 886 (1014)
T KOG4524|consen 808 GIHLL-SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRF 886 (1014)
T ss_pred HHHHh-cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444 6677778888887776432 2223344455678889999999999999999999999999987766555544
Q ss_pred HhCcHHHHHHhcC
Q 012897 206 EAGVCPRLVELLG 218 (454)
Q Consensus 206 ~~~~i~~L~~ll~ 218 (454)
-.+++|.+-+++.
T Consensus 887 l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 887 LEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHH
Confidence 4477777776553
No 376
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=56.31 E-value=52 Score=21.24 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHhccHHHHHHH-hcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 383 YAQLVEEAEGLEKIENL-QSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 383 ~~~~l~~~g~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
-+..+.+.|+.+.+..+ ...++++|...+..+++-+..+|.+.
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 57889999999999988 45568999999999998777665543
No 377
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=55.86 E-value=60 Score=22.27 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=30.6
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 384 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
...+.+.+.-..+..+..|++++++..|..++..+-
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 557777887888999999999999999999988653
No 378
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=55.22 E-value=2.1e+02 Score=27.94 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=112.5
Q ss_pred ChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-----------CCCChhhhhchHHHHHHhhc----CCC----hhHHHH
Q 012897 125 ALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-----------PQPPFDQVRPALPALAQLVH----SND----EEVLTD 185 (454)
Q Consensus 125 ~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----------~~~~~~~~~~~l~~l~~ll~----~~~----~~v~~~ 185 (454)
++..+.+++..+....++.++.|.|++|-... ++....-...++...+.++- .+. +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 56777777766677788899999998773221 11111122445555555553 222 334444
Q ss_pred HHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC
Q 012897 186 ACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS 262 (454)
Q Consensus 186 a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~ 262 (454)
++.-+...... .+-+.. -++..|+.+ +-.++++..++.....=+..+. ....++..=+.|.++.-+
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sL--- 246 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSL--- 246 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhh---
Confidence 55555443322 222222 223334333 2245677666655444443332 233444444444555444
Q ss_pred cchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHH
Q 012897 263 HKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPL 341 (454)
Q Consensus 263 ~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L 341 (454)
+...++..+.-+.-... -+++.++.+++.-++..+-..-...++++...++.-|..-....++.+-..-.-....+.+
T Consensus 247 -s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 247 -SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred -hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 33456666655655555 3556666666532333222222234678888888888776665444332221113355566
Q ss_pred hhccCC----CCHHHHHHHHHHHHHHH
Q 012897 342 CDLFVC----PDPRIVTVCLEGLENIL 364 (454)
Q Consensus 342 ~~~l~~----~~~~v~~~al~~L~~l~ 364 (454)
.+++-+ .+-++-.....||..+.
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMt 352 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMT 352 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcC
Confidence 665532 22233334455555443
No 379
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=54.25 E-value=1.1e+02 Score=24.82 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=53.2
Q ss_pred cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 123 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
.+.+...+..+....|..+....+.++.+.... ..-.......++|.+..+|.+..+.-+..++..+..+....
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKF 100 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 344555555555557778887777777754443 33455566789999999999999999999999988877543
No 380
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=53.91 E-value=1.4e+02 Score=28.20 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=52.1
Q ss_pred CchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHH
Q 012897 71 TSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLS 150 (454)
Q Consensus 71 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 150 (454)
++...+.++++.++-.|+.+++++++.-|+..-.+|.++.+.-..+|..+. .+.-..+.+.+.....-.=....+.+|+
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlg 244 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILG 244 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHH
Confidence 466677788889999999999999999999998888888653333333322 1222233344322222222334445555
Q ss_pred hhcCCC
Q 012897 151 NFCRGK 156 (454)
Q Consensus 151 ~l~~~~ 156 (454)
.+....
T Consensus 245 SiIngf 250 (457)
T KOG2085|consen 245 SIINGF 250 (457)
T ss_pred HhcCcc
Confidence 555443
No 381
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=53.86 E-value=69 Score=23.77 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=52.6
Q ss_pred CChHHHHHhhcC---CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCC
Q 012897 250 GALPYLLGLLTH---SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 250 ~~l~~L~~~L~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~ 324 (454)
|++..+-..+.+ ..+...|..+...+..+..-....+ ..+.|.++..|+. +.++++..++.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-----~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-----SSARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445555555555 3366788899999988886333333 2356677777766 35689999999988888776
Q ss_pred CHHHHHHHH
Q 012897 325 THEQIKYLV 333 (454)
Q Consensus 325 ~~~~~~~l~ 333 (454)
+++....+.
T Consensus 86 ~~~~l~~ll 94 (107)
T PF08064_consen 86 DEEDLGPLL 94 (107)
T ss_pred CHHHHHHHH
Confidence 666555443
No 382
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=52.86 E-value=42 Score=26.53 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897 98 VREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 98 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (454)
-+..|+..|+.+.+.-. +..|+.+| .+.+.++...|+.+|.+...
T Consensus 79 s~~~Av~LLGtM~GGYN-----------V~~LI~~L-~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGYN-----------VQPLIDLL-KSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp -HHHHHHHHTTS-SSTT-----------HHHHHHGG---G-TTTHHHHHHHHHT--T
T ss_pred CHHHHHHHHhhccCCCc-----------HHHHHHHH-cCCcHHHHHHHHHHHHhhHH
Confidence 35556677777654321 67778887 66677788888887776543
No 383
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=2.8e+02 Score=31.05 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChH----HHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP----YLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~----~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
+..+++-+...++..+..|+..++.+....+ ..... ++++ ...++..+. +..||...-.++..+...-...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~--~e~~~--~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSD--TEELK--GILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhccccc--chHHh--hhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778899999999999999986443 22222 2332 333444566 8899999999998887643333
Q ss_pred HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
....++ .+++...-..-+.+..|...|...+.....
T Consensus 118 lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 118 LSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 333332 233333332233456666666666666655
No 384
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.48 E-value=3.3e+02 Score=29.02 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=68.5
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHh---cCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNIT---AGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~---~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
.++..-..+|.++ +..+|..|..++.... ...++..-+++ ....|.++..+..+++-+...|..+|.++...+..
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4555666777888 8899999998887443 34444444555 45789999999999999999999999999998765
Q ss_pred HHHHHHHHcCCcHHHhhccC
Q 012897 327 EQIKYLVREGCIKPLCDLFV 346 (454)
Q Consensus 327 ~~~~~l~~~~~i~~L~~~l~ 346 (454)
....++.+ +++|.+-.++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 55555443 56666665443
No 385
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.26 E-value=75 Score=22.44 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=43.9
Q ss_pred ChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh----cCCCCCcchhhHHHHHh
Q 012897 160 PFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL----LGHPSPSVLIPALRTVG 233 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~~~~~~v~~~a~~~L~ 233 (454)
.......++..+..++ +..+.+++.-.+.|+..+........ ++| -+.++.. ..++++.+...|..++.
T Consensus 11 ~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 11 NFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444566777777775 45688999999999999987654433 333 3333333 34456667666666553
No 386
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=50.31 E-value=2.3e+02 Score=26.86 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=60.0
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhC--C--------CCHHHHHHHHHHHHHhh
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA--S--------PSDDVREQAVWALGNVA 110 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~--------~~~~v~~~a~~~L~~l~ 110 (454)
-..++..|..+-.+..+...+..+.-++. +......+.....++.|+.+-+ . ++..+...++.||+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34455566655433445556666666666 3444444443344555555432 1 34577888999999999
Q ss_pred CCChhhHHHHHhcCChHHHHHHhc
Q 012897 111 GDSPRCRDLVLSQGALIPLLAQLN 134 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~l~~~l~ 134 (454)
..++..+....+......+++.+.
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~ 149 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVL 149 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHH
Confidence 999989999988888888877764
No 387
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.58 E-value=3.2e+02 Score=28.34 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 302 (454)
.....+++|+..+....-.....+-....+-.+...+... .+.++..++.+++.+|.-..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalciV~e------------------- 266 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCIVGE------------------- 266 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHheeeh-------------------
Confidence 3456677777777654332222233344566677777666 78888888888888875322
Q ss_pred hhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHhhhhhhhccCCccccc
Q 012897 303 QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKVGEAEKNMGTATADVN 381 (454)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 381 (454)
....+..+.+|+.++.....+. ...|++.+... +..+...|...+..+....+...- --
T Consensus 267 ----e~~~ekvl~aiT~~ae~~~veR---------F~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf-------Rl 326 (1102)
T KOG1924|consen 267 ----ENGLEKVLEAITTIAEAKPVER---------FRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF-------RL 326 (1102)
T ss_pred ----hhHHHHHHHHHHHHHhhcchhh---------hhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH-------HH
Confidence 2223334455555554322222 33445555544 445555555555555443333221 11
Q ss_pred HHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHH
Q 012897 382 QYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKIL 415 (454)
Q Consensus 382 ~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 415 (454)
..+..+.+.|.-+.|..+....|+. .+...+++
T Consensus 327 hlR~E~mr~gL~~~l~~l~~i~n~~-ldvqlkvf 359 (1102)
T KOG1924|consen 327 HLRSEFMRDGLHKYLPDLTEINNDI-LDVQLKVF 359 (1102)
T ss_pred HHHHHHHHHhHHHHHHHhhhhccHH-HHHHHHHH
Confidence 1455566788888888886665443 33334433
No 388
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=49.54 E-value=20 Score=26.55 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=30.4
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHH
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFE 59 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~ 59 (454)
..++.+..++.. ++.-..+++.|.++.|+.+|.+.+ .++...
T Consensus 65 ~~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN-~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLATA--PELYPELVELGAVPSLLGLLSHEN-TDIAID 106 (108)
T ss_pred HHHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCC-cceehc
Confidence 345556555554 455667889999999999999998 676543
No 389
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=49.41 E-value=1.2e+02 Score=23.90 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=48.2
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
....-..+..+|.+++++++..|+.|+...-. +..... -+.|-.++ + +...+.. +..+. +..+....
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l~pY------~d~L~~Ll-d--d~~frde-L~~f~-~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYLTPY------KDNLENLL-D--DKTFRDE-LTTFN-LSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHhH------HHHHHHHc-C--cchHHHH-HHhhc-ccCCcCCC
Confidence 34456778889999999999999999988632 211111 13344444 2 1223332 22111 22222334
Q ss_pred ChhhhhchHHHHHHhhc
Q 012897 160 PFDQVRPALPALAQLVH 176 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~ 176 (454)
.......++|.++.+|-
T Consensus 82 ~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILY 98 (141)
T ss_pred CHHHHhHHHHHHHHHHH
Confidence 55566788898888873
No 390
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=48.79 E-value=12 Score=22.19 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.1
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHH
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTV 232 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L 232 (454)
.+...+...+.++++.+|.+|+..|
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5666777888999999999998754
No 391
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=47.84 E-value=55 Score=24.66 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=28.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDS 113 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 113 (454)
+++.|+..|.++++++...|+.+|...|.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4789999999999999999999999999766
No 392
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=47.55 E-value=92 Score=28.73 Aligned_cols=64 Identities=25% Similarity=0.417 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 55 QLQFEAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP---SDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
.+|..|+.++..+.. .+.....++..+ ++.-|+.+++.+ ...++..|+.+|..++.......+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 345555555555554 667777787777 999999999863 4789999999999998766654443
No 393
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.44 E-value=2.5e+02 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=37.4
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
.-..-|...+.+.-.+.+.... ..+..-+.+..+. +-.+|+.|..-|-.+|.+
T Consensus 39 k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhhh-----HHHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 3445566667777666554443 3455677788888 889999999999888876
No 394
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.07 E-value=59 Score=31.47 Aligned_cols=73 Identities=10% Similarity=0.009 Sum_probs=58.8
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC--CHHHHHHHHHHHHHHHHh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKV 366 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~~ 366 (454)
++..|.+-+.+.++.++..|+..|-.+..++...+-..+.+.++++-++.+.+.. +.+|+..++..|...-..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 4556667777778899999999888888888877777888899999999988865 567999988888777543
No 395
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=44.64 E-value=88 Score=23.70 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=46.2
Q ss_pred ChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhH-HHHHHHHHHhhcCCC
Q 012897 83 AVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSM-LRNATWTLSNFCRGK 156 (454)
Q Consensus 83 ~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~-~~~a~~~L~~l~~~~ 156 (454)
++|.+...|. +..++.+..+..+++.++...+-. +. .+..+++.+........ .+.++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4677888888 678999999999999998655422 22 24455555434433333 478888888888654
No 396
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=43.65 E-value=1.2e+02 Score=27.96 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCcHHHHHHcC--CHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhH
Q 012897 29 SPPIEEVIQSG--VVPRFVEFLMRED--YPQLQFEAAWALTNIASGTSENTK 76 (454)
Q Consensus 29 ~~~~~~~~~~~--~l~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 76 (454)
......+...+ ++..|+++++.++ ...++..|+.+|..++.......+
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 44556666666 9999999998764 368999999999999985544444
No 397
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=42.85 E-value=2e+02 Score=24.17 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=83.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHHHH
Q 012897 43 RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSPRCRDLV 120 (454)
Q Consensus 43 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~~ 120 (454)
.+..+..++. .+.+..|+.++.......+. ..++.+-..+.. ++..+.... ..+++.+....+
T Consensus 55 l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~------ 119 (213)
T PF08713_consen 55 LADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP------ 119 (213)
T ss_dssp HHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG------
T ss_pred HHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH------
Confidence 3445566666 67777777777654431110 134555555555 556666655 444555432111
Q ss_pred HhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHH
Q 012897 121 LSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDK 200 (454)
Q Consensus 121 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 200 (454)
...+.+.+-+ .++++-+++.++.++...... .....++..+...+.+++.-++..+.|+|..++..+++.
T Consensus 120 ---~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 120 ---EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp ---GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred ---HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 1233344444 677788888887665544433 233456666777778889999999999999999988877
Q ss_pred HHHHHHh
Q 012897 201 IQAVIEA 207 (454)
Q Consensus 201 ~~~~~~~ 207 (454)
...++..
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 398
>PLN03205 ATR interacting protein; Provisional
Probab=42.76 E-value=2.3e+02 Score=26.68 Aligned_cols=177 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcC---CCchhhHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhh--
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIAS---GTSENTKVVIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVA-- 110 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~-- 110 (454)
.++.|+.+..-++ ..+...++++|..+.. ++......--+.+++..+--+.+- ..+.++-.|+.++.-+.
T Consensus 324 LlEaLLdLC~v~n-~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAET-AVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCc-hhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhc
Q ss_pred CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh---------------------cCCCCC---CChhhhhc
Q 012897 111 GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF---------------------CRGKPQ---PPFDQVRP 166 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l---------------------~~~~~~---~~~~~~~~ 166 (454)
++...-|+.+-...+++.+-++|.+....-|+..++..|.-| +.++.. ........
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHH
Q ss_pred hHHHHHHhhcCC-----ChhHHHHHHHHHHHhccCChHHHHHHHHh------CcHHHHHHhc
Q 012897 167 ALPALAQLVHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEA------GVCPRLVELL 217 (454)
Q Consensus 167 ~l~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll 217 (454)
++.-|..++... +.++...++..|+.++.......+.++.. +++-.+++.|
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqvL 544 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHLL 544 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHHH
No 399
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=42.66 E-value=81 Score=28.51 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC------C-------HHHHHHHHHcCCcHHHhhccCC--------CC-
Q 012897 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG------T-------HEQIKYLVREGCIKPLCDLFVC--------PD- 349 (454)
Q Consensus 292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~------~-------~~~~~~l~~~~~i~~L~~~l~~--------~~- 349 (454)
...+..+++-+...+...|..|+.+|..++.+. . ..+...+.+.|+++.|..+++. .+
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~~~~~~~~~~~ 138 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMFIENSWSCDDQ 138 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence 446777888888888889999999999998765 1 2234456678999998888752 00
Q ss_pred -----------HHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh
Q 012897 350 -----------PRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ 400 (454)
Q Consensus 350 -----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~ 400 (454)
..-...++.+|+-++..................+...+.+.+.+..|..+.
T Consensus 139 ~~~~~~~~~~~~~el~~~LTilY~~vev~r~~~~~~~~~~~~~~~~~~L~~p~ll~~L~~~i 200 (293)
T PF07923_consen 139 DSNLPAVSLADSTELRVLLTILYFMVEVARRDRDSPEWMAIVREFIMELEEPNLLVFLFKMI 200 (293)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHhcCCcHHHHHHHHH
Confidence 123446677777777665544111110001233444554556665555543
No 400
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.33 E-value=6e+02 Score=31.81 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=47.0
Q ss_pred cchhhHHHHHhHhhccCccchh--hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQ--CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
..|..+...++......+.... .-...+++..+.+.|... .+++...+..++..........-...++.+.=|.|..
T Consensus 1248 ~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~ 1326 (3550)
T KOG0889|consen 1248 RLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMN 1326 (3550)
T ss_pred cchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHh
Confidence 3477777777777665443211 122346788888888888 7888888888877776653333334444433344444
Q ss_pred H
Q 012897 301 L 301 (454)
Q Consensus 301 l 301 (454)
+
T Consensus 1327 l 1327 (3550)
T KOG0889|consen 1327 L 1327 (3550)
T ss_pred h
Confidence 3
No 401
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=41.47 E-value=2e+02 Score=23.56 Aligned_cols=155 Identities=11% Similarity=0.117 Sum_probs=83.8
Q ss_pred hHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHH
Q 012897 252 LPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 331 (454)
Q Consensus 252 l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 331 (454)
=+.|+.+|... .++......|+.+.+.-...+ .....+..+.|.+.+.+.+..-...|......+...-..+....
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 35677777544 334455555555554211111 11256777778887766444444667777777763224455544
Q ss_pred HHHcCCcHHHhhccCCCC-HHHHHH--HH-HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCH-H
Q 012897 332 LVREGCIKPLCDLFVCPD-PRIVTV--CL-EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNN-E 406 (454)
Q Consensus 332 l~~~~~i~~L~~~l~~~~-~~v~~~--al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~-~ 406 (454)
+.++ +.+.+.+.|..+. .++... |+ .++...+..-+... ....+.+++.. .++.+..+.+...+ .
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~-------~~~~vk~L~~~--mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM-------RVDLVKELLPK--MVKSVKELVERGMEVG 150 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHH--HHHHHHHHHHcccHHH
Confidence 4443 6677777776553 233222 22 33333333333221 11223344332 56778888888888 7
Q ss_pred HHHHHHHHHHHhcC
Q 012897 407 IYEKAVKILETYWL 420 (454)
Q Consensus 407 v~~~a~~~l~~~~~ 420 (454)
.-.+|..-+++++.
T Consensus 151 ~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 151 FLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788777776653
No 402
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.20 E-value=1.4e+02 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCC
Q 012897 394 EKIENLQSHDNNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 394 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 423 (454)
..|.+|+.+.+++--+.|-++|.++-.+|+
T Consensus 176 klL~rLLkSn~PeDLqaANkLIK~lVkeee 205 (594)
T KOG1086|consen 176 KLLARLLKSNHPEDLQAANKLIKTLVKEEE 205 (594)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 567788888888877788888877776555
No 403
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=40.70 E-value=1.9e+02 Score=23.08 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh
Q 012897 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII 247 (454)
Q Consensus 168 l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 247 (454)
...++.+|+.+...-....+..|.+=..-..+. ..-++.+++..+..-=.....--+..|+..|+.+.-+..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 345566665554433334444444432211111 123333333333332111222235567777777654321
Q ss_pred ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 248 TYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 248 ~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
+..|+.+|.+. +..+...|+.+|.+-..
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 56899999888 88899999999987654
No 404
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=40.57 E-value=48 Score=28.09 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=53.7
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 287 (454)
...+.+...+.++++-++..++.++...... .... ..+..+...+.++ +..++....|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567778888888888888887776555543 1111 2344555566777 889999999999999998888777
Q ss_pred HHHhC
Q 012897 288 AVIDA 292 (454)
Q Consensus 288 ~l~~~ 292 (454)
.++..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 405
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=39.18 E-value=60 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=31.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+++.|+..|.+++ +++...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4788999999999 899999999999999844 55555543
No 406
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=38.98 E-value=38 Score=17.97 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR 50 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~ 50 (454)
.+|..|+.+|.++-.. ..++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~~------------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE------------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH------------hHHHHHHHHhcC
Confidence 5788999999987322 135667766654
No 407
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=38.95 E-value=2.2e+02 Score=27.91 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=58.8
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN 372 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~ 372 (454)
.++-.+.+-....|..+..++..++..+... +....++ +++.|.-+|..+..+-+..|+..|..+-..-....
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI~flkecGakL~~VS- 310 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVS- 310 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhC-
Confidence 3444556666667888888888888888753 2222222 46777778887665555555555544421111100
Q ss_pred ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
.. .-.|+++++..+++.. ++-.+...+|+.+|+
T Consensus 311 ------------pr-~~n~IfErlR~ILhe~--Eld~rvqy~iEtlf~ 343 (739)
T KOG2140|consen 311 ------------PR-ALNGIFERLRYILHEG--ELDRRVQYMIETLFQ 343 (739)
T ss_pred ------------hH-HHhHHHHHHHHHHhHh--hHHHHHHHHHHHHHH
Confidence 00 0134456666665443 355566666776664
No 408
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.90 E-value=38 Score=26.52 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=43.6
Q ss_pred CCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 012897 39 GVVPRFVEFLMREDY---PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWAL 106 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L 106 (454)
.+++.+.+.+..... +++...++.++..... --....+.+.+.++.+..++.+ +.++..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 345555556655442 6788899999999887 3344556667899999999954 44477777664
No 409
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=38.02 E-value=1.1e+02 Score=22.03 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhc
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-PQLQFEAAWALTNIA 68 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~~l~ 68 (454)
++..+|..|+..|..++..... ...-+...+...+.+.+.+++. .....-|+..|..+-
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~--~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSS--SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999877422 2223344678888888886652 456778888888773
No 410
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=37.63 E-value=1.4e+02 Score=26.02 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=44.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 344 LFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 344 ~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
+++++++.+.+.++.+..+++...-..-. ... ..+.....+. +.-..+.++..+.++.++-.|.+.+++.-.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~--~~~-~~~~~W~~~~--~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWIC--VNP-SDEQLWESMN--ELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS----H-HHHHHHHHHH--HHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHc--CCc-hHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 46778899999998888888664211110 000 1222233332 223566677888899999999999998653
No 411
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=37.23 E-value=99 Score=22.93 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=42.7
Q ss_pred chHHHHHHhhcC----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccC
Q 012897 166 PALPALAQLVHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 166 ~~l~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~ 239 (454)
|++..+...+.+ .+..-+..++.++..+......... .+.+.++.+|+. ..++++..++.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 344444444443 4556688888888888764333333 345556666644 34578899988888877643
No 412
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=37.18 E-value=1.8e+02 Score=21.94 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh-CCCCHHH-HHHHHHHHHHhhCCC
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSDDV-REQAVWALGNVAGDS 113 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v-~~~a~~~L~~l~~~~ 113 (454)
++|.+.+.|...+.++.+..+..+++.++...+ ..+. .+..+++.+ .+....- ...++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 578889999944438999999999999998332 2222 334444432 2222222 477888888888443
No 413
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=36.03 E-value=1.6e+02 Score=21.87 Aligned_cols=90 Identities=8% Similarity=0.053 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 012897 137 AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 216 (454)
Q Consensus 137 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 216 (454)
..+.+..-..|++.+... ...++..+.+.+....+.-+..++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 344555555666655422 24566667777777777777777777777776644333444444445556555
Q ss_pred cCCCCCcchhhHHHHHhHh
Q 012897 217 LGHPSPSVLIPALRTVGNI 235 (454)
Q Consensus 217 l~~~~~~v~~~a~~~L~~l 235 (454)
....++.++....+.+.-.
T Consensus 88 ~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 88 YEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHhCCHHHHHHHHHHHHHc
Confidence 5666666776665555443
No 414
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.54 E-value=6.1e+02 Score=26.92 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHH
Q 012897 182 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLL 256 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 256 (454)
..++++..+..++.+....-. ..++.++....+ .+++....+...++.++..-.+.- ..=.-.++.|+
T Consensus 483 ~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~ 555 (982)
T KOG2022|consen 483 RTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLF 555 (982)
T ss_pred HHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHH
Confidence 455666666666654332212 335666665432 367788888888888775322111 11225678888
Q ss_pred HhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCCH
Q 012897 257 GLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 257 ~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 326 (454)
+-|..+ +.-..+...|..+|...++...... .+++...-+.+... .+..+.....+++.+...-.+
T Consensus 556 ~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~-d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~p 623 (982)
T KOG2022|consen 556 QGLHNS---KESEQAISTLKTLCETCPESLDPYA-DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKP 623 (982)
T ss_pred HHhcCc---hHHHHHHHHHHHHHHhhhhhCchHH-HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccH
Confidence 888655 3445666668888887666555444 34555555555543 567788888899888775543
No 415
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.82 E-value=5.8e+02 Score=26.44 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=38.2
Q ss_pred CChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc
Q 012897 112 DSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 176 (454)
Q Consensus 112 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~ 176 (454)
..|.+|..+.+.|++..+++.+.+........-+..+|.+|.... ...+.....-+..++++|+
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d-~lnmdldf~Slelmi~LL~ 426 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRD-KLNMDLDFLSLELMIHLLR 426 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhh-hhcccccchhHHHHHHHHh
Confidence 446789999999999999999976555444444444555554332 1111112233445556664
No 416
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.47 E-value=5.5e+02 Score=26.07 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
.+++..++.++.++...++..++.++-.+..+.... -....++..+..+++.. +-.+...+..++.++
T Consensus 323 ~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g---~~sl~~Vr~i~~llK~r-n~~v~~~~~~~~lsL 390 (704)
T KOG2153|consen 323 QKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGG---SGSLAIVRIINSLLKTR-NYEVLPDMITTFLSL 390 (704)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCcc---chhHHHHHHHHHHhhhh-cccchhhHHHHHHhc
Confidence 356667777777787888888999998888754311 11223455555555555 555555555555544
No 417
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.09 E-value=3.9e+02 Score=24.19 Aligned_cols=135 Identities=12% Similarity=0.147 Sum_probs=62.6
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC------CCCcchhhHHHHHhHhhccCccchhhhh
Q 012897 174 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDDFQTQCII 247 (454)
Q Consensus 174 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 247 (454)
++...+...+.+|+.+|.+=+ ... .++|.+++++.. .+-......+...+.+..+..-.....+
T Consensus 206 l~dEs~~~~r~aAl~sLr~ds-----Glh-----QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~ 275 (450)
T COG5095 206 LLDESDEQTRDAALESLRNDS-----GLH-----QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL 275 (450)
T ss_pred HHHHHHHHHHHHHHHHhccCc-----cHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH
Confidence 345566777777777775421 112 345666666533 2223333334444444433221222111
Q ss_pred ccCChHHHHHhhc-----CC----cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH-Hhhhc-chhhHHHHHHH
Q 012897 248 TYGALPYLLGLLT-----HS----HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN-LLQNA-EFDIKKEAAWA 316 (454)
Q Consensus 248 ~~~~l~~L~~~L~-----~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~-ll~~~-~~~v~~~a~~a 316 (454)
..++|.++.++- +. +.-.+|.-|+..+...+...+.....+ +..+...+.. ++... .....--|+..
T Consensus 276 -hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktL-kPRvtrTllKafLD~~k~~sT~YGalkg 353 (450)
T COG5095 276 -HQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTL-KPRVTRTLLKAFLDREKTESTQYGALKG 353 (450)
T ss_pred -HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhh-chHHHHHHHHHHHhcccccchhhhhhhh
Confidence 245565555551 11 122478888888887776433333222 2233333333 33332 33444455555
Q ss_pred HHHh
Q 012897 317 ISNA 320 (454)
Q Consensus 317 L~~l 320 (454)
+.-+
T Consensus 354 ls~l 357 (450)
T COG5095 354 LSIL 357 (450)
T ss_pred hhhh
Confidence 5544
No 418
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=32.04 E-value=50 Score=17.18 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc
Q 012897 141 MLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH 176 (454)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~ 176 (454)
++..+.++|+.+-. ...++.|++.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46778888888765 356666666653
No 419
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=31.16 E-value=2.2e+02 Score=21.14 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCHHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhC
Q 012897 39 GVVPRFVEFLMRED---YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAG 111 (454)
Q Consensus 39 ~~l~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~ 111 (454)
|++..+-+.+.+.+ +..-+..++.++..+..-.. ..+ ..+.|.+..+|++ ..++++..++.+...+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g---~~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG---KHI--SSALPQIMACLQSALEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55666666666654 34558888888887776211 111 1345667777766 678899999988888764
No 420
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=31.10 E-value=5.8e+02 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAG 111 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 111 (454)
++..++.+-..++..+|..|..++..+|.
T Consensus 283 liK~~V~vWstge~~~rv~Afl~l~~l~~ 311 (661)
T KOG2256|consen 283 LIKAVVHVWSTGEESLRVLAFLCLIDLCR 311 (661)
T ss_pred HHHHHheeeccCCcchhhHHHHHHHHHHH
Confidence 34555555666888999999999998884
No 421
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.94 E-value=75 Score=28.74 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=42.3
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--------------chhhHHHHhCCChHHHHHhhC
Q 012897 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--------------SENTKVVIDHGAVPIFVKLLA 92 (454)
Q Consensus 35 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~~~~~g~i~~L~~lL~ 92 (454)
..+...+..+++-|.+++ ...|..|+++|..++.+. ..+...+.+.|+++.+..+|.
T Consensus 56 ~~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344567888999999988 899999999999998754 223344556777777777764
No 422
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.41 E-value=1.7e+02 Score=33.20 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=74.5
Q ss_pred CCHHHHHH----hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 012897 39 GVVPRFVE----FLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 114 (454)
Q Consensus 39 ~~l~~L~~----lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 114 (454)
..++.++. +|.+.+ +.++.-+......+...... +.+..++..|+..+.+++..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 45555544 456677 88888888887777764422 2334467888888876666566789999999986444
Q ss_pred hhHHHHHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHH
Q 012897 115 RCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVL 183 (454)
Q Consensus 115 ~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~ 183 (454)
. .+.. ...+..++..+ ..-+..-.+....+|+.++.............+--.+-+.|.+.++...
T Consensus 506 ~---~l~~fa~~l~giLD~l-~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K 571 (1426)
T PF14631_consen 506 S---ELQPFATFLKGILDYL-DNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYK 571 (1426)
T ss_dssp H---HHHHTHHHHHGGGGGG-GG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHH
T ss_pred H---HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHH
Confidence 3 2221 12344444444 3344455566677777777543221112222333334456666666653
No 423
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.98 E-value=6.9e+02 Score=26.45 Aligned_cols=249 Identities=10% Similarity=0.050 Sum_probs=123.0
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-
Q 012897 44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLS- 122 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~- 122 (454)
|=+-++++. ...+-.+...+.++-...|.- .+++ ...=.|...+..++..+|-..+++...--.+- ..+..
T Consensus 29 ldkGlr~~~-t~eqpeavvr~~RLFek~Pfp--ifiN-s~llrLaDaF~~Gn~llRf~V~rv~~q~g~hl----n~v~n~ 100 (970)
T KOG1988|consen 29 LDKGLRSGK-TSEQPEAVVRFPRLFEKYPFP--IFIN-SQLLRLADAFPVGNNLLRFAVLRVDQQSGKHL----NKVLNG 100 (970)
T ss_pred Hhhcccccc-cccchHHHHHHHHHHhhCCch--hhhh-HHHHHHHHHhccCcHHHHHHHHHHHhhccccc----hhhhhh
Confidence 334455555 344555555555555533322 2222 22334445555678888887777766421111 11111
Q ss_pred cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCChHHH
Q 012897 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGTNDKI 201 (454)
Q Consensus 123 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 201 (454)
...+..+.... .+.|+..+...+.+++.+..--+.. ...+.++ .-+.+.++--.+.++.+..+.+..+.+..
T Consensus 101 aE~lrri~~V~-hsnDp~aRAllL~ilg~~s~lipEf------n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA 173 (970)
T KOG1988|consen 101 AEFLRRIFYVD-HSNDPVARALLLRILGQLSALIPEF------NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFA 173 (970)
T ss_pred hhhhheeEEee-cCCCHHHHHHHHHHHHHhhhhcccc------cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhH
Confidence 11111111111 4557778888888888776543222 2233333 44555555556777777777775544332
Q ss_pred HHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 202 QAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 202 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
. ++...+-.++.. -.+..+...+.++..+.... ..........+.++......+--.....++.+++
T Consensus 174 ~-----si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~~tps~d~~v~fL~stT~La 242 (970)
T KOG1988|consen 174 C-----SICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLA 242 (970)
T ss_pred H-----HHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhcCCCcccceeeehhhhHHHH
Confidence 2 222333333332 23456667777777776432 2222344556666654423333333445555555
Q ss_pred cCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCC
Q 012897 280 AGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSG 323 (454)
Q Consensus 280 ~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 323 (454)
...-..+ .+-+..+.+.++.+ ...++..++|-+.+++..
T Consensus 243 srs~~ai-----~eq~d~l~q~~ked~~kivr~~vl~kl~~La~r 282 (970)
T KOG1988|consen 243 SRSLVAI-----SEQSDVLLQFLKEDERKIVRLKVLRKLDFLAKR 282 (970)
T ss_pred HHHHHHh-----HHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 4221111 23455566666643 455666677766666553
No 424
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=29.36 E-value=3.8e+02 Score=23.20 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC------------Ch-hHH----HHHHHHHHHhcCCC
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED------------YP-QLQ----FEAAWALTNIASGT 71 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~------------~~-~v~----~~a~~~L~~l~~~~ 71 (454)
++.....++..+..+++. ++......+.++++.+.+.|..-+ ++ .+. ..=...|+.++. +
T Consensus 77 ~~~y~~vGc~L~~~Ll~~--~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~ 153 (226)
T PF14666_consen 77 NQKYVRVGCQLLETLLSS--PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-T 153 (226)
T ss_pred chHHHHHHHHHHHHHHcC--cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-C
Confidence 355556677777777766 566666778899999888876542 01 111 222456777777 7
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
+.....+-+.++.+.+..+.+.++. ......++.++=...+. ....++.......+..++..|...|..
T Consensus 154 ~~Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~---------~~R~iLsKaLt~~s~~iRl~aT~~L~~ 222 (226)
T PF14666_consen 154 PNGLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDG---------HPRIILSKALTSGSESIRLYATKHLRV 222 (226)
T ss_pred hhHHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCcc---------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888999999999887543 12222244444222221 223333333266777899999988877
Q ss_pred hcC
Q 012897 152 FCR 154 (454)
Q Consensus 152 l~~ 154 (454)
+.+
T Consensus 223 llr 225 (226)
T PF14666_consen 223 LLR 225 (226)
T ss_pred Hhc
Confidence 653
No 425
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.92 E-value=1.1e+02 Score=29.58 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 210 CPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 210 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
...+-.+..+.+++++.++..++++++.........+-+...-..++..+..+ .+++-+.+..++.-+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 33344444668899999999999999987765554444555566778888888 8888888888877665
No 426
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.89 E-value=4.2e+02 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhcc
Q 012897 202 QAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 202 ~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 238 (454)
..+.+.++...|+.+.++. ..+.....+.++..+..+
T Consensus 172 ~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 172 WALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 3345557777777777664 333444555555555543
No 427
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.86 E-value=4.4e+02 Score=23.84 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=71.8
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-----hhhhhHHHHHHHHHHhhcCCCCCCChhhhh
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVR 165 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 165 (454)
++..+...|..|+.+|.+=+ ...+. ++.++..+.. -.+-+.....+...+.|..+...--.....
T Consensus 207 ~dEs~~~~r~aAl~sLr~ds----GlhQL------vPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 207 LDESDEQTRDAALESLRNDS----GLHQL------VPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHhccCc----cHHHH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 34456777777777665532 12121 3444444421 123445555556666676665433444556
Q ss_pred chHHHHHHhhc-----CCCh-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CC-CCCcchhhHHHHHh
Q 012897 166 PALPALAQLVH-----SNDE-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GH-PSPSVLIPALRTVG 233 (454)
Q Consensus 166 ~~l~~l~~ll~-----~~~~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~~~L~ 233 (454)
..+|.++.++- +... .+|.-|+..+..++.+.+.... -++..+...+++.. .. .......-|+++++
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Yk-tLkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYK-TLKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhh-hhchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 77776665542 2222 3677777777777765443322 33334555544433 32 23455666777776
Q ss_pred Hhhc
Q 012897 234 NIVT 237 (454)
Q Consensus 234 ~l~~ 237 (454)
.+..
T Consensus 356 ~l~k 359 (450)
T COG5095 356 ILSK 359 (450)
T ss_pred hhch
Confidence 6654
No 428
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.96 E-value=79 Score=29.03 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=47.7
Q ss_pred HHHHHhHhhccCccchhhhhccCChHHHHHhh--cCCcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLL--THSHKKSIKKEACWTISNITAGNRDQIQA 288 (454)
Q Consensus 228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 288 (454)
..+.++++|+..+.....+-+.++++.++.-. ++. +|-+++....++.++...+.++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~ 437 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKI 437 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHH
Confidence 66789999998887777788888888877655 344 8899999999999999876665443
No 429
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.56 E-value=3.6e+02 Score=22.42 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=49.1
Q ss_pred CcHHHhhccCC---CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHH
Q 012897 337 CIKPLCDLFVC---PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVK 413 (454)
Q Consensus 337 ~i~~L~~~l~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 413 (454)
=...++..+.. ...+....++..+..++...+.... --..+..|...|..+.+.++...+++.+......
T Consensus 22 RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~-------R~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~~ 94 (197)
T PF06367_consen 22 RFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNF-------RVHLRNEFERLGLLDILEKLRNLEDDDLQEQIDI 94 (197)
T ss_dssp TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHH-------HHHHHHHHHHTTHHHHHHHHTTS--HHHHHHHHH
T ss_pred cHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHH-------HHHHHHHHHHCCcHHHHHHHHhcchHHHHHHHHH
Confidence 35667777763 5567888888888888877654432 2225778899999999999999988888766554
Q ss_pred HHH
Q 012897 414 ILE 416 (454)
Q Consensus 414 ~l~ 416 (454)
..+
T Consensus 95 f~~ 97 (197)
T PF06367_consen 95 FEE 97 (197)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 430
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.34 E-value=3.3e+02 Score=21.95 Aligned_cols=99 Identities=16% Similarity=0.048 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCCCCH--------HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCccc
Q 012897 308 DIKKEAAWAISNATSGGTH--------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATAD 379 (454)
Q Consensus 308 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 379 (454)
..+.-+++.+..+...... .....+++..+.+.|...+.++++.+...+++.+..++......-+
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk------- 109 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLK------- 109 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4445555555555544322 1334456677888888888888899999999999999865433211
Q ss_pred ccHHHHHHHHhccHHHH-HHHhcCCC--HHHHHHHHHHHHHhcC
Q 012897 380 VNQYAQLVEEAEGLEKI-ENLQSHDN--NEIYEKAVKILETYWL 420 (454)
Q Consensus 380 ~~~~~~~l~~~g~~~~l-~~l~~~~~--~~v~~~a~~~l~~~~~ 420 (454)
..+. =.+..+ ..++.+++ ..-+..+..++..++.
T Consensus 110 -----~ele--~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 110 -----LELE--VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred -----HHHH--HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 1111 111222 33455444 3556667777777664
No 431
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=27.23 E-value=99 Score=26.51 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=46.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCC-cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSP-PIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIAS 69 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 69 (454)
++.|.+.|+.+|..|++.|...+...... ....+. .+-..|.-++-..|.|.+|+..+.-|+.+..
T Consensus 6 ~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 6 AKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 46788999999999999999998775332 222222 2344455555555558899988888888876
No 432
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=6.6e+02 Score=25.07 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-----CCChHHHHHhhCC-CCHHHHHHHHHHH
Q 012897 33 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID-----HGAVPIFVKLLAS-PSDDVREQAVWAL 106 (454)
Q Consensus 33 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~g~i~~L~~lL~~-~~~~v~~~a~~~L 106 (454)
......|-++.|++-+++++ ++++..++..|..+...+........+ ..--..+++...+ .++..+.+.+.+|
T Consensus 41 ed~~lk~dLellVeriqd~d-~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDil 119 (881)
T COG5110 41 EDAMLKGDLELLVERIQDPD-IDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADIL 119 (881)
T ss_pred hhhhhcccHHHHHHHhhCCC-hHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHHH
Q ss_pred HHhh-CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhhcCCChhHH
Q 012897 107 GNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLVHSNDEEVL 183 (454)
Q Consensus 107 ~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~ 183 (454)
+.+| ..+...+...........+..+- .=.+.-++.-+..+=....... ..+.+.....+--.++.++-..+.+.
T Consensus 120 S~l~m~yse~~kh~sL~YRl~g~i~D~~-~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~- 197 (881)
T COG5110 120 SALCMVYSENGKHKSLAYRLEGNIIDLK-EWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEF- 197 (881)
T ss_pred HHHeeecccccchhhHHHHhhcccCCHH-HHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccch-
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC--------------------cchhhHHHHHhHhhccCccch
Q 012897 184 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP--------------------SVLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 184 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--------------------~v~~~a~~~L~~l~~~~~~~~ 243 (454)
+.++.+.+-|.++.++++....+. ...+.|..+-..+-.... ..
T Consensus 198 ---------------dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~-av 261 (881)
T COG5110 198 ---------------DAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTR-AV 261 (881)
T ss_pred ---------------HHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHH-HH
Q ss_pred hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhc----chhhHHHHHHH
Q 012897 244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNA----EFDIKKEAAWA 316 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~----~~~v~~~a~~a 316 (454)
.-.+..+-...+.+......++..+++..+.|+..-. .+.+..+.++..|-+..-...+..+ .|.+-+.....
T Consensus 262 ~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng~lsdhf~ylgkELnl~~PkvpedI~K~ 341 (881)
T COG5110 262 VGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNGYLSDHFRYLGKELNLDKPKVPEDILKG 341 (881)
T ss_pred HHHHhcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCCcHHHHHHHHHHHhcCCCCCChHHHHHh
No 433
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.22 E-value=1.9e+02 Score=23.96 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=50.3
Q ss_pred HHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 211 PRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 211 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
+.+.....+++.-++..+..++...... ..... ..++.+-.++.++ +..|+....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5677788888888888887777666543 11111 2344455555556 889999999999999987776655544
No 434
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=25.98 E-value=1.8e+02 Score=24.55 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=40.3
Q ss_pred hhHHHHhCCChHHHHHhhCC---CC---------------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch
Q 012897 74 NTKVVIDHGAVPIFVKLLAS---PS---------------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 135 (454)
Q Consensus 74 ~~~~~~~~g~i~~L~~lL~~---~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 135 (454)
..+.+.+.|++..++.+|.. .. .++...+...|..+|.++..+...+... ++.+...+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHH
Confidence 34455566666666666643 11 3667788899999998887776666542 3322222211
Q ss_pred hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC
Q 012897 136 RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS 177 (454)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~ 177 (454)
.. ...--.+..++..+..+.+..........+..++.++..
T Consensus 113 ~~-~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 LQ-IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIELLRK 153 (207)
T ss_dssp CC-H-TTHHHHHHHHHHHTT----------------------
T ss_pred hh-ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHH
Confidence 10 000113445555666654333333333446666666654
No 435
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.28 E-value=3.4e+02 Score=22.24 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 88 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 88 (454)
--++|..|..++..++... ....+ + ..+++.+..-|.+ + .+++..+...|.+++...|.....-++ .+++.+-
T Consensus 40 GLelRK~ayE~lytlLd~~-~~~~~-~--~~~~~~v~~GL~D-~-~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~ 112 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTC-LSRID-I--SEFLDRVEAGLKD-E-HDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLR 112 (169)
T ss_dssp GGHHHHHHHHHHHHHHHST-CSSS--H--HHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-HHhCC-H--HHHHHHHHhhcCC-c-HHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHH
Confidence 3689999999999998764 22222 1 1236667777777 6 899999999999999855554443332 5677777
Q ss_pred HhhCC----C--------CHHHHHHHHHHHHHh
Q 012897 89 KLLAS----P--------SDDVREQAVWALGNV 109 (454)
Q Consensus 89 ~lL~~----~--------~~~v~~~a~~~L~~l 109 (454)
..|.. . ..+..+.+++++..+
T Consensus 113 ~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 113 KTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 76642 1 235566666666666
No 436
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.13 E-value=4.5e+02 Score=22.72 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=89.0
Q ss_pred HcCCHHHHHHhhcCCC------------ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCC----------
Q 012897 37 QSGVVPRFVEFLMRED------------YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP---------- 94 (454)
Q Consensus 37 ~~~~l~~L~~lL~~~~------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---------- 94 (454)
....+..|+.+..... .+......+..+..+.. +++....+...++++.+.+.|..-
T Consensus 49 ~~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~ 127 (226)
T PF14666_consen 49 STKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHD 127 (226)
T ss_pred cChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccc
Confidence 3455666666544211 13445556777777777 677777777888888888877431
Q ss_pred ---C-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhc
Q 012897 95 ---S-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRP 166 (454)
Q Consensus 95 ---~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 166 (454)
+ ..+-......|+.++... .....+-+.++...+..+......+++... ++.+|=-. ....
T Consensus 128 ~lfs~~~l~~tl~~~Yf~~IG~lS~~~-~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~-------~~~~ 196 (226)
T PF14666_consen 128 PLFSPQRLSTTLSRGYFLFIGVLSSTP-NGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYS-------VDGH 196 (226)
T ss_pred cccCHHHHHhhHHHHHHHHHHHHhCCh-hHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCC-------CccH
Confidence 1 123344456778886544 445666677888888888854434333333 33343111 0111
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 167 ALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 167 ~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
.=..+-+.|.+++..+|.+|...|..+.
T Consensus 197 ~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 197 PRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2235667888999999999998887664
No 437
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.96 E-value=2.8e+02 Score=22.66 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc
Q 012897 138 KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 217 (454)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 217 (454)
.-++|..|..++..+........ ....++..+..-+.+ +.+++.-+...+.+++...+.....-++ .+++.+-..+
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 46899999999999977542221 245567778888877 8999999999999998877654333222 4555555555
No 438
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.69 E-value=8.2e+02 Score=25.60 Aligned_cols=103 Identities=15% Similarity=0.228 Sum_probs=70.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
.+|+.|..+-.++-+.++..++.++..+....|+-... .+..++..+ .+++..+...|...|..|....|+...
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCccee
Confidence 35666666666777999999999999998777764333 356777777 667778888899999999887776665
Q ss_pred hhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc
Q 012897 162 DQVRPALPALAQLVHSN--DEEVLTDACWALSYLS 194 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~ 194 (454)
.+...+ ..++-.+ +.....+++.+|..+.
T Consensus 378 Vvi~EI----er~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 378 VVIDEI----ERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred ehHHHH----HHHHcccCccccceeehhhhhhhhH
Confidence 554333 3333222 3445566666666554
No 439
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.68 E-value=34 Score=30.65 Aligned_cols=15 Identities=40% Similarity=0.859 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCccC
Q 012897 439 YAGNEVQVPSGGFNF 453 (454)
Q Consensus 439 ~~~~~~~~~~~~~~~ 453 (454)
-.+--.+.|||||+|
T Consensus 58 ligpv~~mPSGGf~y 72 (412)
T COG4370 58 LIGPVLTMPSGGFIY 72 (412)
T ss_pred eecccccCCCCCccc
Confidence 344456899999998
No 440
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=24.61 E-value=4e+02 Score=21.88 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=73.7
Q ss_pred cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh-cCCHHHHH
Q 012897 209 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT-AGNRDQIQ 287 (454)
Q Consensus 209 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~-~~~~~~~~ 287 (454)
+-|.|+.+|+..+ +.....+.|+.++..-.... .....+..+-|.+.+.+. ...-...|......|. .-..+.+.
T Consensus 4 ikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 4 IKPLLISCLTMQE--TKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred hHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHH
Confidence 3456677775543 33444455555443211111 113456666666666554 2333366777777776 23344444
Q ss_pred HHHhCCChHHHHHHhhhc-chhhHHHHH------HHHHHhcCCCC-HHHHHHHHHcCCcHHHhhccCCCCH-HHHHHHHH
Q 012897 288 AVIDAGLVGPLVNLLQNA-EFDIKKEAA------WAISNATSGGT-HEQIKYLVREGCIKPLCDLFVCPDP-RIVTVCLE 358 (454)
Q Consensus 288 ~l~~~~~i~~L~~ll~~~-~~~v~~~a~------~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~~l~~~~~-~v~~~al~ 358 (454)
++++. +.+...+.|..+ +.++....+ .+...+..... .+..+.+.. ..++.+.++++.+.. .....++.
T Consensus 80 ~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~-~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 80 PFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLP-KMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred HHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHHH
Confidence 55543 666666666654 233332111 11222222222 122233222 245555566666665 66666776
Q ss_pred HHHHHHHh
Q 012897 359 GLENILKV 366 (454)
Q Consensus 359 ~L~~l~~~ 366 (454)
-+..+++.
T Consensus 158 ~~e~~v~~ 165 (174)
T PF04510_consen 158 DFESFVSR 165 (174)
T ss_pred HHHHHHHH
Confidence 66666654
No 441
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=23.34 E-value=6.2e+02 Score=23.67 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=78.5
Q ss_pred HHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh-hcC---Cc-chhHHHHHHHHH
Q 012897 202 QAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LTH---SH-KKSIKKEACWTI 275 (454)
Q Consensus 202 ~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~-L~~---~~-~~~v~~~a~~~L 275 (454)
+.+++.+++..+..+-.. ..+.++..+++.+.++....... .+....+...+.++ +.. +. ...+...-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 345666778888877654 45678888888888888654322 23344566666666 432 21 234555555666
Q ss_pred HHHhc---CCHHHHHHHHhCC--------------------------ChHHHHHHhhhcchhhHHHHHHHHHHhcCCC--
Q 012897 276 SNITA---GNRDQIQAVIDAG--------------------------LVGPLVNLLQNAEFDIKKEAAWAISNATSGG-- 324 (454)
Q Consensus 276 ~nl~~---~~~~~~~~l~~~~--------------------------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 324 (454)
..+|. ..|.....+.+.+ ++..|+..+.++ -.+-..|..++.-++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 55553 4565555544221 356677777665 567777777777776655
Q ss_pred CHHHHHHHHH
Q 012897 325 THEQIKYLVR 334 (454)
Q Consensus 325 ~~~~~~~l~~ 334 (454)
++....++.+
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555566665
No 442
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.16 E-value=1e+03 Score=27.37 Aligned_cols=149 Identities=11% Similarity=-0.002 Sum_probs=74.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDL 119 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 119 (454)
+..+..+..++.+..++..++..+......+..........++-..+..++.+.+..+|+.|+.+|+.+...+.. ...
T Consensus 1528 l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~- 1606 (1710)
T KOG1851|consen 1528 LRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS- 1606 (1710)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-
Confidence 444554444554478888777666655542211112222234556677788888889999999999988643321 000
Q ss_pred HHhcCChHHHHHHh-chhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhcc
Q 012897 120 VLSQGALIPLLAQL-NERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSD 195 (454)
Q Consensus 120 ~~~~~~i~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~ 195 (454)
.......... ..+.+......|...|+.+....|..-.....+.+..+....+ +...+...+-.++...-+
T Consensus 1607 ----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~-e~~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1607 ----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR-ESAAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred ----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC-CchHHHHHHHHHHHHHHH
Confidence 0011111111 1333444555666677776655443332222222222222222 234555555556655543
No 443
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.04 E-value=1.6e+02 Score=24.82 Aligned_cols=100 Identities=14% Similarity=0.167 Sum_probs=44.8
Q ss_pred HHHHHcCCHHHHHHhhcCCCC-----------------hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCC
Q 012897 33 EEVIQSGVVPRFVEFLMREDY-----------------PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS 95 (454)
Q Consensus 33 ~~~~~~~~l~~L~~lL~~~~~-----------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~ 95 (454)
+.+...|++..++.+|..+.. ..+...+...|..++.++.++...+.+. ++.+...+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 345566888888887765321 3466788889999999888888777653 343333332211
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch
Q 012897 96 DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE 135 (454)
Q Consensus 96 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 135 (454)
...-..+..++..+..+++.....+.+.. +..++.++..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp H-TTHHHHHHHHHHHTT-----------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHH
Confidence 11112456667777777776655555443 7777777744
No 444
>PRK09169 hypothetical protein; Validated
Probab=22.93 E-value=1.4e+03 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=5.8
Q ss_pred ChhHHHHHHHHHHH
Q 012897 179 DEEVLTDACWALSY 192 (454)
Q Consensus 179 ~~~v~~~a~~~L~~ 192 (454)
++.-..+++++|+.
T Consensus 329 ~aQ~vAN~LNALSK 342 (2316)
T PRK09169 329 NAQAVANALNALSK 342 (2316)
T ss_pred CHHHHHHHHHHHhc
Confidence 33334444444443
No 445
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=22.23 E-value=6.6e+02 Score=23.57 Aligned_cols=144 Identities=14% Similarity=0.096 Sum_probs=72.8
Q ss_pred ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch-----------------hhhhhHHHH
Q 012897 83 AVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE-----------------RAKLSMLRN 144 (454)
Q Consensus 83 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----------------~~~~~~~~~ 144 (454)
+++.++.+|++ .+.++....+.-|..... ++..+...+ +..|.+.+.+ -...++...
T Consensus 142 ~~~~il~~L~~e~dWeV~s~VL~hLp~qL~----Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~ 216 (356)
T PF03542_consen 142 WFSVILQCLEHETDWEVYSYVLVHLPSQLS----NKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVC 216 (356)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhh----hhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHH
Confidence 56777777765 567776665555544332 222222222 4333332210 013466777
Q ss_pred HHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCC
Q 012897 145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSP 222 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~ 222 (454)
...+|..|..+...-.......++..+..-+.+. ....++.+|.-.+..-+.... +.++.++..|+. ..+
T Consensus 217 ~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~-----k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 217 VFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMK-----KLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhccch
Confidence 7777777776654334444455666666655442 334455555544443333322 233444444432 234
Q ss_pred cchhhHHHHHhHhhccC
Q 012897 223 SVLIPALRTVGNIVTGD 239 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~ 239 (454)
.+....+..|+.++.-.
T Consensus 289 ~~Ai~ILEFLs~L~~lP 305 (356)
T PF03542_consen 289 NMAIHILEFLSSLSRLP 305 (356)
T ss_pred hhHHHHHHHHHHHhhCc
Confidence 45556777777777644
No 446
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.93 E-value=1.8e+02 Score=21.66 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=27.2
Q ss_pred CCcchhhHHHHHhHhhcc-CccchhhhhccCChHHHHHhhc
Q 012897 221 SPSVLIPALRTVGNIVTG-DDFQTQCIITYGALPYLLGLLT 260 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~ 260 (454)
+.++...++.+|..++.+ +.+....+.+..++..+..+|.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 345566677777777777 4555666667777777777664
No 447
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.71 E-value=1.7e+02 Score=17.62 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=21.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 391 EGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 391 g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
|.-+.|+.++...+...+..|..+++.+
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 3445677777888899999999888753
No 448
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=21.14 E-value=17 Score=35.98 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=79.6
Q ss_pred CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHhCCChHH
Q 012897 220 PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGP 297 (454)
Q Consensus 220 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~ 297 (454)
.-..+...|+...+|++.-.. ..+-....+..+-+.+.+. +..+.-.+..+|.++|. +++..+..++....+..
T Consensus 47 ~ws~~~Vqal~s~~nlaqpt~---~e~S~~~~L~t~t~Gi~S~-drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~ 122 (847)
T KOG2312|consen 47 QWSQMQVQALQSNANLAQPTS---GESSLIKQLLTPTRGISSP-DRFLIMRALEILPPLCGREGNPQVICQVLSNDAYGF 122 (847)
T ss_pred ccchhhhHhhhhhcccCCcch---hhhhHHHHHhhhccCCCCC-CceeEeeccccCcccccCCCCceeehhhhchHHHHH
Confidence 344577889999999987221 1111112333444445566 66777788888888886 57777777777778888
Q ss_pred HHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc
Q 012897 298 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 345 (454)
Q Consensus 298 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l 345 (454)
.+..+.-.|.-+....+.+|..|...++..........+.+..|+.+.
T Consensus 123 iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 123 IVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSLS 170 (847)
T ss_pred HHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhccc
Confidence 888887777777777778888777665543333333345666666654
No 449
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.65 E-value=1.9e+02 Score=22.81 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 384 AQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
+.........+.+..++.+++++||..|.++|-.|-+
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3344445556777889999999999999999887654
No 450
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.56 E-value=15 Score=27.00 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLL 24 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~ 24 (454)
|+.+|+++|+.||..|+.....+.
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHcCCChhHHHHHHHHHHHhC
Confidence 456789999999999987765543
No 451
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=20.56 E-value=7.9e+02 Score=24.77 Aligned_cols=60 Identities=12% Similarity=-0.060 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHhhcCCC-CCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 138 KLSMLRNATWTLSNFCRGK-PQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~-~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
...++-..+..|+.+.... +.... ............+|++.+.-+...|+.+.+..+...
T Consensus 493 p~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 493 PDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred CccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 3345666666666665543 11111 122222223334566778888888888888887654
No 452
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=20.21 E-value=4.2e+02 Score=30.32 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=64.7
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 012897 135 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 214 (454)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 214 (454)
.+.++.++..+......+.... .......++..|+..+-+++..-...|+.+|..++...+...... +..+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 3445666666666666665543 122345678888877767776666788999999987555433321 12333344
Q ss_pred HhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHH
Q 012897 215 ELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269 (454)
Q Consensus 215 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~ 269 (454)
..+.+=+..-......+|+.++........ -+...+.-.+-+.|.+. ++..++
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~ 572 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKR 572 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHH
Confidence 444443333345556777777653321111 12222333344455555 554443
Done!