Query 012897
Match_columns 454
No_of_seqs 323 out of 2474
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.5E-59 5E-64 457.2 43.0 441 1-453 62-510 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.8E-58 6E-63 452.3 43.8 440 2-453 82-529 (529)
3 4b8j_A Importin subunit alpha- 100.0 6.6E-49 2.3E-53 386.0 45.3 424 2-427 80-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 6.7E-47 2.3E-51 371.6 44.9 420 2-425 93-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 3E-45 1E-49 353.3 42.6 421 2-425 26-448 (450)
6 3ul1_B Importin subunit alpha- 100.0 6.7E-39 2.3E-43 311.8 27.7 363 1-367 105-480 (510)
7 3tpo_A Importin subunit alpha- 100.0 1.8E-38 6.3E-43 310.5 30.2 362 2-367 125-499 (529)
8 1xm9_A Plakophilin 1; armadill 100.0 4E-38 1.4E-42 301.6 30.9 365 40-423 3-452 (457)
9 3now_A UNC-45 protein, SD10334 100.0 1.9E-38 6.6E-43 314.5 23.1 411 2-431 336-793 (810)
10 3now_A UNC-45 protein, SD10334 100.0 6.8E-38 2.3E-42 310.6 26.2 361 2-370 383-787 (810)
11 1jdh_A Beta-catenin; beta-cate 100.0 2E-36 6.8E-41 297.8 35.7 394 2-418 107-528 (529)
12 3nmz_A APC variant protein; pr 100.0 3.3E-37 1.1E-41 290.0 28.2 359 2-367 38-452 (458)
13 2z6h_A Catenin beta-1, beta-ca 100.0 3.3E-35 1.1E-39 294.7 38.6 388 1-411 103-518 (644)
14 3l6x_A Catenin delta-1; cateni 100.0 2.6E-35 8.9E-40 283.0 31.2 369 37-423 46-479 (584)
15 4b8j_A Importin subunit alpha- 100.0 6.3E-35 2.1E-39 286.6 34.6 365 39-420 74-443 (528)
16 1wa5_B Importin alpha subunit; 100.0 1.6E-34 5.4E-39 283.7 36.5 371 37-421 85-458 (530)
17 2jdq_A Importin alpha-1 subuni 100.0 4.2E-36 1.4E-40 289.4 24.4 361 2-367 70-445 (450)
18 1xm9_A Plakophilin 1; armadill 100.0 1.3E-36 4.5E-41 291.1 19.7 358 1-366 7-450 (457)
19 2z6g_A B-catenin; FULL-length, 100.0 5.6E-34 1.9E-38 289.9 39.4 396 1-419 239-662 (780)
20 3l6x_A Catenin delta-1; cateni 100.0 1.3E-35 4.4E-40 285.1 23.8 360 1-368 53-479 (584)
21 1jdh_A Beta-catenin; beta-cate 100.0 2.2E-34 7.4E-39 283.3 24.3 397 2-420 65-489 (529)
22 3nmz_A APC variant protein; pr 100.0 5.1E-34 1.8E-38 268.4 21.7 314 8-325 94-453 (458)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-33 6.2E-38 282.1 27.0 397 2-420 62-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 3.9E-33 1.3E-37 283.7 26.4 396 2-419 198-621 (780)
25 3nmw_A APC variant protein; AR 100.0 8.2E-30 2.8E-34 233.1 20.7 270 54-326 46-338 (354)
26 3nmw_A APC variant protein; AR 100.0 3.9E-30 1.3E-34 235.3 18.1 274 9-285 45-339 (354)
27 4hxt_A De novo protein OR329; 100.0 4.7E-27 1.6E-31 207.8 21.4 240 39-281 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 1.2E-26 4E-31 205.3 21.2 241 82-324 2-243 (252)
29 4db8_A Armadillo-repeat protei 99.9 6.1E-27 2.1E-31 207.1 18.0 239 39-280 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 8.4E-27 2.9E-31 206.2 17.3 233 2-237 18-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-25 1E-29 197.5 19.2 236 180-424 54-291 (296)
32 3opb_A SWI5-dependent HO expre 99.9 9.4E-24 3.2E-28 205.6 20.3 347 10-367 308-730 (778)
33 3opb_A SWI5-dependent HO expre 99.9 7.7E-23 2.6E-27 199.2 25.0 386 11-421 270-729 (778)
34 4db6_A Armadillo repeat protei 99.9 5.5E-23 1.9E-27 176.2 20.9 198 165-364 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 9E-23 3.1E-27 174.9 19.8 200 36-237 9-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-21 6.6E-26 173.0 20.5 239 41-280 30-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 7.6E-21 2.6E-25 161.6 14.0 197 40-238 9-230 (233)
38 1b3u_A Protein (protein phosph 99.8 3.3E-19 1.1E-23 177.3 22.1 344 39-419 242-586 (588)
39 3tt9_A Plakophilin-2; cell adh 99.8 5.3E-20 1.8E-24 156.4 11.2 192 1-196 13-230 (233)
40 1b3u_A Protein (protein phosph 99.8 1.2E-18 4E-23 173.4 22.3 376 3-421 171-549 (588)
41 4fdd_A Transportin-1; heat rep 99.8 4.6E-19 1.6E-23 183.7 17.9 350 2-369 96-475 (852)
42 4fdd_A Transportin-1; heat rep 99.8 2.3E-18 8E-23 178.4 19.7 388 5-421 57-472 (852)
43 2vgl_B AP-2 complex subunit be 99.8 2.3E-17 8E-22 163.1 22.5 328 2-368 92-422 (591)
44 2vgl_B AP-2 complex subunit be 99.7 2.2E-16 7.6E-21 156.1 23.2 326 2-367 55-384 (591)
45 3grl_A General vesicular trans 99.7 1.8E-14 6.1E-19 137.1 30.7 402 8-423 74-553 (651)
46 1oyz_A Hypothetical protein YI 99.7 8.8E-16 3E-20 137.4 20.6 259 35-361 19-278 (280)
47 3grl_A General vesicular trans 99.7 1.2E-14 4E-19 138.4 26.6 353 9-369 35-453 (651)
48 1oyz_A Hypothetical protein YI 99.7 3.3E-15 1.1E-19 133.6 19.1 248 2-318 29-278 (280)
49 2bpt_A Importin beta-1 subunit 99.7 6.2E-15 2.1E-19 153.3 22.6 344 8-368 343-714 (861)
50 1w63_A Adapter-related protein 99.6 3.4E-15 1.2E-19 148.1 17.8 355 3-420 114-490 (618)
51 1qgr_A Protein (importin beta 99.6 9.5E-15 3.2E-19 152.1 20.8 269 3-280 179-479 (876)
52 2bpt_A Importin beta-1 subunit 99.6 2.7E-15 9.1E-20 156.0 16.4 396 3-420 376-811 (861)
53 1ibr_B P95, importin beta-1 su 99.6 2.8E-15 9.6E-20 144.3 14.7 386 3-422 8-439 (462)
54 1u6g_C TIP120 protein, CAND1; 99.6 1.8E-14 6.2E-19 155.0 20.9 402 2-420 12-463 (1230)
55 1qgr_A Protein (importin beta 99.6 3.1E-14 1.1E-18 148.3 21.0 401 3-420 373-827 (876)
56 1ibr_B P95, importin beta-1 su 99.6 4.8E-15 1.6E-19 142.7 12.2 350 8-369 49-441 (462)
57 1u6g_C TIP120 protein, CAND1; 99.6 3.5E-14 1.2E-18 152.9 18.3 393 2-419 92-547 (1230)
58 1w63_A Adapter-related protein 99.6 6.3E-14 2.2E-18 139.0 18.6 367 2-420 76-469 (618)
59 3ltm_A Alpha-REP4; protein eng 99.5 2.1E-12 7.2E-17 110.1 17.3 187 38-281 18-204 (211)
60 3ltm_A Alpha-REP4; protein eng 99.5 2.2E-12 7.5E-17 110.0 17.2 188 81-324 18-205 (211)
61 3ltj_A Alpharep-4; protein eng 99.5 8E-12 2.7E-16 105.6 19.9 185 82-322 14-198 (201)
62 3ltj_A Alpharep-4; protein eng 99.5 4.3E-12 1.5E-16 107.3 17.8 184 39-279 14-197 (201)
63 2vgl_A Adaptor protein complex 99.4 3.1E-11 1.1E-15 119.3 21.3 323 2-366 80-434 (621)
64 2vgl_A Adaptor protein complex 99.4 1.4E-11 4.8E-16 121.8 16.8 325 3-367 118-472 (621)
65 2db0_A 253AA long hypothetical 99.2 1.9E-09 6.4E-14 84.3 19.2 218 80-323 30-247 (253)
66 3b2a_A TON_1937, putative unch 99.1 8.6E-10 2.9E-14 90.2 13.1 227 165-418 32-259 (265)
67 4ady_A RPN2, 26S proteasome re 99.1 3.4E-09 1.1E-13 106.2 20.0 265 7-325 406-679 (963)
68 3tjz_B Coatomer subunit gamma; 99.1 3.8E-09 1.3E-13 95.2 17.7 272 2-318 74-349 (355)
69 4gmo_A Putative uncharacterize 99.1 2E-09 7E-14 107.8 15.8 219 35-279 31-257 (684)
70 3tjz_B Coatomer subunit gamma; 99.1 1.3E-08 4.4E-13 91.8 18.9 276 40-360 69-348 (355)
71 2db0_A 253AA long hypothetical 99.0 8.1E-08 2.8E-12 75.3 17.2 218 165-423 31-249 (253)
72 4gmo_A Putative uncharacterize 98.9 5.5E-09 1.9E-13 104.7 10.0 196 166-365 35-258 (684)
73 3b2a_A TON_1937, putative unch 98.9 9.8E-08 3.3E-12 78.2 15.0 181 2-196 39-219 (265)
74 4ady_A RPN2, 26S proteasome re 98.8 9.6E-07 3.3E-11 88.7 24.6 291 11-366 373-677 (963)
75 2qk2_A LP04448P; mini spindles 98.8 5.6E-09 1.9E-13 90.8 7.8 187 84-280 17-205 (242)
76 2qk2_A LP04448P; mini spindles 98.8 1.4E-08 4.6E-13 88.3 10.0 185 128-323 19-206 (242)
77 1ho8_A Vacuolar ATP synthase s 98.8 1.2E-06 4E-11 80.9 22.2 322 81-419 76-475 (480)
78 2qk1_A Protein STU2; STU2P, XM 98.8 4.7E-08 1.6E-12 84.8 11.8 190 44-237 21-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.8 3.9E-08 1.3E-12 85.3 11.3 191 129-322 21-220 (249)
80 1te4_A Conserved protein MTH18 98.6 1.6E-08 5.5E-13 78.5 2.8 119 208-362 12-130 (131)
81 1wa5_C Importin alpha RE-expor 98.6 8.6E-06 2.9E-10 85.3 22.8 377 8-422 49-527 (960)
82 1te4_A Conserved protein MTH18 98.5 2.2E-08 7.7E-13 77.7 2.2 122 37-193 10-131 (131)
83 1wa5_C Importin alpha RE-expor 98.5 8.5E-06 2.9E-10 85.4 21.5 340 4-366 93-526 (960)
84 1ho8_A Vacuolar ATP synthase s 98.5 3.6E-05 1.2E-09 71.1 21.9 295 6-322 135-476 (480)
85 2iw3_A Elongation factor 3A; a 98.5 1.1E-05 3.7E-10 82.2 19.8 287 10-320 28-322 (986)
86 2iw3_A Elongation factor 3A; a 98.5 3.8E-05 1.3E-09 78.3 23.5 304 41-369 16-328 (986)
87 2x1g_F Cadmus; transport prote 98.4 2.4E-05 8.3E-10 82.1 21.8 329 11-366 204-616 (971)
88 2x1g_F Cadmus; transport prote 98.4 2.9E-05 9.9E-10 81.6 21.7 397 8-420 256-722 (971)
89 3dad_A FH1/FH2 domain-containi 98.2 2E-05 6.9E-10 69.1 12.4 188 213-410 123-326 (339)
90 4hat_C Exportin-1; heat repeat 98.2 0.00023 7.7E-09 74.2 22.1 338 7-368 206-621 (1023)
91 2x19_B Importin-13; nuclear tr 98.2 0.00012 4.1E-09 76.8 20.3 331 11-367 217-601 (963)
92 4hat_C Exportin-1; heat repeat 98.2 0.00069 2.4E-08 70.7 25.4 311 40-369 195-573 (1023)
93 2x19_B Importin-13; nuclear tr 98.1 0.00047 1.6E-08 72.4 24.1 339 49-421 459-847 (963)
94 3dad_A FH1/FH2 domain-containi 98.1 8.1E-05 2.8E-09 65.3 13.6 187 168-355 120-326 (339)
95 3m1i_C Exportin-1; heat repeat 98.0 0.0028 9.5E-08 67.1 27.9 312 41-369 196-573 (1049)
96 3m1i_C Exportin-1; heat repeat 97.9 0.0018 6.2E-08 68.4 23.4 341 8-367 207-620 (1049)
97 3ibv_A Exportin-T; karyopherin 97.8 0.00018 6.2E-09 74.8 12.7 311 46-369 200-570 (980)
98 3oc3_A Helicase MOT1, MOT1; re 97.7 0.00092 3.1E-08 62.5 14.2 244 40-318 175-432 (800)
99 3ibv_A Exportin-T; karyopherin 97.7 0.00017 5.9E-09 75.0 10.7 304 7-325 204-569 (980)
100 3gjx_A Exportin-1; transport, 97.6 0.0079 2.7E-07 62.7 22.6 313 42-370 209-600 (1073)
101 4ffb_C Protein STU2; tubulin f 97.6 0.0013 4.3E-08 58.0 14.4 186 3-196 16-213 (278)
102 2of3_A ZYG-9; multifunctional 97.6 0.00027 9.2E-09 60.7 9.5 183 170-368 50-239 (266)
103 1lrv_A LRV, leucine-rich repea 97.6 1.5E-05 5.3E-10 68.0 1.8 186 3-318 57-242 (244)
104 2of3_A ZYG-9; multifunctional 97.6 0.0022 7.4E-08 55.1 14.9 180 83-280 47-236 (266)
105 1upk_A MO25 protein; transfera 97.5 0.0045 1.5E-07 54.3 15.9 201 77-280 73-283 (341)
106 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00012 4.3E-09 68.1 5.1 237 4-275 182-431 (800)
107 4ffb_C Protein STU2; tubulin f 97.4 0.0018 6.3E-08 56.9 12.3 188 213-420 14-212 (278)
108 1lrv_A LRV, leucine-rich repea 97.3 3.8E-05 1.3E-09 65.5 0.5 185 46-360 57-241 (244)
109 2fv2_A RCD1 required for cell 97.1 0.0056 1.9E-07 51.3 11.5 185 9-197 14-226 (268)
110 3gjx_A Exportin-1; transport, 97.1 0.028 9.4E-07 58.7 18.9 297 7-325 218-598 (1073)
111 2fv2_A RCD1 required for cell 97.0 0.034 1.1E-06 46.7 14.5 185 179-366 14-225 (268)
112 3c2g_A SYS-1 protein; beta-cat 96.8 0.089 3E-06 46.2 16.4 293 106-418 266-616 (619)
113 2f31_A Diaphanous protein homo 96.6 0.018 6.2E-07 48.8 10.6 141 264-412 67-220 (233)
114 1upk_A MO25 protein; transfera 96.5 0.17 5.7E-06 44.5 16.4 198 202-414 72-277 (341)
115 3c2g_A SYS-1 protein; beta-cat 96.5 0.023 7.9E-07 49.7 10.7 174 190-365 266-473 (619)
116 3u0r_A Apoptosis inhibitor 5; 96.5 0.14 4.9E-06 47.2 16.3 123 94-236 40-162 (507)
117 3u0r_A Apoptosis inhibitor 5; 96.5 0.55 1.9E-05 43.5 21.8 253 44-325 34-301 (507)
118 3l9t_A Putative uncharacterize 96.4 0.15 5.3E-06 42.4 14.6 144 41-206 73-218 (240)
119 3l9t_A Putative uncharacterize 96.4 0.046 1.6E-06 45.5 11.4 143 128-291 74-218 (240)
120 3eg5_B Protein diaphanous homo 96.0 0.048 1.7E-06 49.9 10.8 161 241-410 101-284 (383)
121 1lsh_A Lipovitellin (LV-1N, LV 95.7 0.57 2E-05 49.2 18.8 172 126-326 393-580 (1056)
122 3a6p_A Exportin-5; exportin-5, 95.5 0.65 2.2E-05 49.7 18.6 283 54-365 27-380 (1204)
123 2bnx_A Diaphanous protein homo 95.4 0.23 7.8E-06 45.5 12.7 139 264-410 71-222 (386)
124 2f31_A Diaphanous protein homo 95.2 0.37 1.3E-05 40.6 12.8 97 15-113 20-127 (233)
125 3eg5_B Protein diaphanous homo 95.1 0.57 2E-05 42.8 14.3 141 15-157 86-249 (383)
126 3a6p_A Exportin-5; exportin-5, 95.0 2.8 9.7E-05 44.8 21.8 289 9-323 26-381 (1204)
127 3ebb_A Phospholipase A2-activa 95.0 1.1 3.6E-05 39.5 15.2 159 41-206 105-273 (304)
128 3gs3_A Symplekin, LD45768P; he 94.4 2.1 7.3E-05 36.4 18.4 88 11-109 30-117 (257)
129 3ebb_A Phospholipase A2-activa 94.3 0.12 4.1E-06 45.5 7.5 111 44-155 152-264 (304)
130 2bnx_A Diaphanous protein homo 93.7 2 6.8E-05 39.3 14.7 140 16-157 25-187 (386)
131 1lsh_A Lipovitellin (LV-1N, LV 93.2 1.8 6.1E-05 45.6 15.4 167 83-282 392-578 (1056)
132 1x5b_A Signal transducing adap 92.6 0.29 1E-05 38.5 6.5 72 337-420 53-125 (163)
133 3g2s_A C-terminal fragment of 92.6 0.23 7.8E-06 38.4 5.7 92 294-392 49-146 (149)
134 3gs3_A Symplekin, LD45768P; he 92.5 4.5 0.00015 34.4 14.6 141 266-419 30-172 (257)
135 3ldz_A STAM-1, signal transduc 92.0 0.26 9E-06 37.7 5.5 72 337-420 43-114 (140)
136 1mhq_A ADP-ribosylation factor 92.0 0.39 1.3E-05 37.1 6.5 72 337-420 39-116 (148)
137 1juq_A ADP-ribosylation factor 91.9 0.47 1.6E-05 37.7 6.9 72 337-420 51-128 (171)
138 3ldz_A STAM-1, signal transduc 91.9 0.28 9.7E-06 37.5 5.5 75 294-368 43-117 (140)
139 3o2t_A Symplekin; heat repeat, 91.8 1.3 4.3E-05 40.3 10.4 120 292-419 62-182 (386)
140 3g2s_A C-terminal fragment of 91.6 0.44 1.5E-05 36.8 6.3 72 337-420 49-126 (149)
141 1mhq_A ADP-ribosylation factor 91.5 0.53 1.8E-05 36.3 6.6 73 294-366 39-117 (148)
142 1vdy_A Hypothetical protein (R 90.9 0.65 2.2E-05 35.2 6.4 77 337-425 50-135 (140)
143 3fga_B Serine/threonine-protei 90.5 8.4 0.00029 35.0 14.4 233 72-323 119-367 (403)
144 3qml_C Protein SLS1, nucleotid 90.3 1.1 3.9E-05 38.7 8.2 134 224-365 44-189 (315)
145 3o2t_A Symplekin; heat repeat, 90.0 7.8 0.00027 35.1 13.8 87 12-109 41-127 (386)
146 1juq_A ADP-ribosylation factor 89.3 0.63 2.1E-05 36.9 5.5 73 294-366 51-129 (171)
147 1x5b_A Signal transducing adap 89.2 0.64 2.2E-05 36.6 5.4 73 294-366 53-126 (163)
148 2npp_B PP2A, B subunit, serine 87.3 14 0.0005 34.1 13.9 233 72-323 152-400 (449)
149 3qml_C Protein SLS1, nucleotid 87.3 2.8 9.5E-05 36.3 8.5 149 168-322 24-189 (315)
150 3zyq_A Hepatocyte growth facto 84.4 2.1 7.2E-05 35.7 6.4 72 337-420 46-118 (226)
151 1elk_A Target of MYB1; superhe 84.4 2.4 8.1E-05 33.0 6.3 72 337-420 54-130 (157)
152 1dvp_A HRS, hepatocyte growth 84.3 2.3 7.8E-05 35.4 6.6 72 337-420 43-115 (220)
153 1vsy_5 Proteasome activator BL 83.0 7 0.00024 40.6 10.8 186 83-279 134-364 (997)
154 1vsy_5 Proteasome activator BL 82.6 8.5 0.00029 40.0 11.2 217 126-366 135-366 (997)
155 3zyq_A Hepatocyte growth facto 81.0 2.2 7.5E-05 35.6 5.2 74 294-367 46-120 (226)
156 1elk_A Target of MYB1; superhe 76.1 6 0.00021 30.7 6.0 74 294-367 54-132 (157)
157 1dvp_A HRS, hepatocyte growth 68.6 7 0.00024 32.4 5.1 73 295-367 44-117 (220)
158 3ut4_A CTHE_2751, putative unc 67.9 32 0.0011 25.7 7.8 94 294-420 32-130 (134)
159 2npp_B PP2A, B subunit, serine 67.6 78 0.0027 29.3 14.1 190 163-360 159-350 (449)
160 1vdy_A Hypothetical protein (R 65.6 18 0.0006 27.4 6.2 72 294-365 50-130 (140)
161 2jak_A Serine/threonine-protei 65.3 31 0.001 31.3 8.8 83 73-156 165-247 (392)
162 3rru_A TOM1L1 protein; structu 60.9 11 0.00037 29.1 4.5 72 337-420 54-130 (152)
163 2jak_A Serine/threonine-protei 59.8 53 0.0018 29.8 9.3 188 164-359 172-361 (392)
164 3pst_A Protein DOA1; protein d 57.9 29 0.001 31.8 7.4 105 90-198 270-392 (425)
165 3rru_A TOM1L1 protein; structu 54.2 16 0.00055 28.1 4.4 74 294-367 54-132 (152)
166 3l3f_X Protein DOA1, DOA1/UFD3 53.7 25 0.00086 31.4 6.2 104 90-197 207-328 (362)
167 3gae_A Protein DOA1; UFD3, CDC 51.6 53 0.0018 27.7 7.7 102 91-196 99-218 (253)
168 2b6c_A Hypothetical protein EF 51.0 65 0.0022 26.4 8.1 134 135-291 65-199 (220)
169 3fga_B Serine/threonine-protei 50.9 1.4E+02 0.005 27.0 18.0 233 165-422 128-368 (403)
170 3gae_A Protein DOA1; UFD3, CDC 49.1 19 0.00065 30.5 4.5 99 53-155 103-218 (253)
171 4atg_A TAF6; transcription, TF 47.0 1.1E+02 0.0038 24.5 8.9 111 125-236 41-161 (196)
172 3pst_A Protein DOA1; protein d 43.5 46 0.0016 30.5 6.3 106 6-116 272-394 (425)
173 3vld_A DNA mismatch repair pro 39.1 2.4E+02 0.0084 26.3 14.1 102 1-110 121-224 (500)
174 1wjt_A Transcription elongatio 37.9 70 0.0024 22.6 5.2 38 384-421 47-85 (103)
175 3l3f_X Protein DOA1, DOA1/UFD3 34.3 45 0.0015 29.8 4.6 102 218-322 209-326 (362)
176 1fyh_A Interferon-gamma; cytok 33.9 1.4E+02 0.0048 24.7 7.0 135 5-155 99-244 (258)
177 3vld_A DNA mismatch repair pro 31.0 3.3E+02 0.011 25.4 12.2 114 33-155 110-226 (500)
178 1w9c_A CRM1 protein, exportin 29.0 2.9E+02 0.01 24.1 13.7 184 224-425 45-250 (321)
179 1sz9_A PCF11 protein; RNA poly 26.7 1.4E+02 0.0047 22.5 5.7 74 165-238 42-115 (144)
180 1vsy_4 Proteasome activator BL 26.7 5.1E+02 0.017 26.1 15.5 283 113-419 329-686 (799)
181 4atg_A TAF6; transcription, TF 26.0 2.5E+02 0.0087 22.4 8.3 123 57-194 25-161 (196)
182 4fu3_A Regulation of nuclear P 25.0 1.6E+02 0.0055 21.6 5.8 57 128-194 11-67 (135)
183 1inz_A EPS15-interacting porte 24.6 2.3E+02 0.0079 21.5 8.1 74 338-423 61-143 (148)
184 1sz9_A PCF11 protein; RNA poly 22.0 1.6E+02 0.0056 22.1 5.3 72 250-322 43-114 (144)
185 3jxy_A Alkylpurine DNA glycosy 21.7 1.3E+02 0.0044 24.8 5.1 83 209-299 132-214 (232)
186 2g7o_A Protein TRAM; four heli 20.7 95 0.0032 20.0 3.0 20 405-424 50-69 (70)
187 4flb_A Regulation of nuclear P 20.7 1.3E+02 0.0044 22.1 4.4 61 126-196 10-70 (132)
188 2xpp_A IWS1, ECU08_0440; trans 20.5 2.8E+02 0.0096 20.9 9.5 78 29-110 51-135 (145)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-59 Score=457.15 Aligned_cols=441 Identities=51% Similarity=0.856 Sum_probs=384.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
||+.++|+|++.|+.|+..++++++.++.++++.+++.|++|.|+++|++.+++.+|..|+|+|+|++.++++.+..+++
T Consensus 62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~ 141 (510)
T 3ul1_B 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD 141 (510)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46789999999999999999999998878899999999999999999987766899999999999999989999999999
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh----hhhHHHHHHHHHHhhcCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~ 156 (454)
.|++|.|+.+|.++++.+++.|+|+|+||+.+.+..+..+.+.|+++.++.++.... ...+++.++|++.+++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999995322 2457889999999999986
Q ss_pred -CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897 157 -PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235 (454)
Q Consensus 157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 235 (454)
+........+++|.|+.++.+++++++..++++|.+++.........+.+.|+++.|+.++.++++.++..++++|+++
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 5556666789999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHH
Q 012897 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 315 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 315 (454)
+.+++.....+++.|+++.|..+|.++ ++.+++.|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++..|+|
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~ 380 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 380 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 998888888899999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH
Q 012897 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK 395 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 395 (454)
+|.|++..++.+++.++.+.|+++.|+.++++++++++..++++|.++++.+++.. ..+.++.++.+.||+++
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHH
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHH
Confidence 99999998888999999999999999999999999999999999999999877543 45568899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCCcc---ccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897 396 IENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF 453 (454)
Q Consensus 396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
|+.|++|+|++|+++|..+|++||..|+|++ .|..+++ +|.|+.. +.|+|||||
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~ 510 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE--GFAFQVQ--DGAPGTFNF 510 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCcc--ccccCCC--CCCCCCCCC
Confidence 9999999999999999999999999776555 3665555 6777766 568899999
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-58 Score=452.25 Aligned_cols=440 Identities=50% Similarity=0.849 Sum_probs=383.1
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.++|+|++.+..|+..++++++.+..++++.+++.|++|.|+++|...+++.++..|+|+|++++.++++....+++.
T Consensus 82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~ 161 (529)
T 3tpo_A 82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG 161 (529)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 56789999999999999999999988788899999999999999999877669999999999999999889999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh----hhhHHHHHHHHHHhhcCCC-
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA----KLSMLRNATWTLSNFCRGK- 156 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~- 156 (454)
|+++.|+.+|.++++.+++.|+|+|++|+.+++..+..+...|+++.++.++.... ...+.+.++|++.+++.+.
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 241 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 241 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999995332 3457889999999999987
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897 157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 236 (454)
+........+++|.|+.++.+++++++..++|+|.+++.........+...|+++.|+.++.++++.++..++.+|++++
T Consensus 242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 321 (529)
T 3tpo_A 242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 321 (529)
T ss_dssp TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 55566677899999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred ccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897 237 TGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316 (454)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 316 (454)
.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++..|+|+
T Consensus 322 ~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a 400 (529)
T 3tpo_A 322 TGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA 400 (529)
T ss_dssp TSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 98888888899999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHH
Q 012897 317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKI 396 (454)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 396 (454)
|+|++..++.++..++.+.|+++.|+++|.++|++++..++++|.++++.++... ..+.+...+.+.||+++|
T Consensus 401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~i 473 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKI 473 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHH
Confidence 9999998888999999999999999999999999999999999999999877543 455688899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCcCCCcc---ccCCCCCCCCCCCCCCCCCCCCCCccC
Q 012897 397 ENLQSHDNNEIYEKAVKILETYWLEEDDET---IAAGDGPQPGFPYAGNEVQVPSGGFNF 453 (454)
Q Consensus 397 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+.|++|+|++|+++|..+|++||..|++++ .|..++. +|.|+.. +.|+|||||
T Consensus 474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~f~f 529 (529)
T 3tpo_A 474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE--GFAFQVQ--DGAPGTFNF 529 (529)
T ss_dssp TGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCc--ccccCCC--CCCCCCCCC
Confidence 999999999999999999999998766554 4666666 6777766 567899999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.6e-49 Score=385.97 Aligned_cols=424 Identities=86% Similarity=1.322 Sum_probs=385.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|+++|++++..|+++|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++.+..+++.
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 159 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH 159 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 56788999999999999999999887557889999999999999999988658999999999999999889999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
|+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.|+.++..+.+..++..++|+|.+|+...+....
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 239 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF 239 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence 99999999999999999999999999999888888999999999999999997777899999999999999998767777
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
....+++|.|+.++.++++.++..++++|.+++...+.....+.+.++++.|+.+|.++++.++..|+++|++++.+++.
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 77899999999999999999999999999999988888778889999999999999999999999999999999998887
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
....+++.++++.|+.+|.++.++.++..|+|+|+|++.+++.....+++.++++.|+.++.++++.++..|+++|++++
T Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 88888999999999999987657899999999999999988888888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc
Q 012897 322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS 401 (454)
Q Consensus 322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 401 (454)
..++++...++.+.|+++.|+.++..++++++..++++|.++++.++...+.... ..+.+...+.+.|+++.|..+++
T Consensus 400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~L~~ 477 (528)
T 4b8j_A 400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAG--DVNVFSQMIDEAEGLEKIENLQS 477 (528)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SCCHHHHHHHHTTHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--cccHHHHHHHHCCcHHHHHHHHc
Confidence 9877888999999999999999999999999999999999999988764432111 24458999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCccc
Q 012897 402 HDNNEIYEKAVKILETYWLEEDDETI 427 (454)
Q Consensus 402 ~~~~~v~~~a~~~l~~~~~~~~~~~~ 427 (454)
+++++++++|..++++||..+++++.
T Consensus 478 ~~~~~v~~~a~~il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 478 HDNNEIYEKAVKILEAYWMDEEDDTM 503 (528)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHHCCCcccccc
Confidence 99999999999999999998877663
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.7e-47 Score=371.58 Aligned_cols=420 Identities=59% Similarity=0.911 Sum_probs=380.3
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|+++|++++..|++.|+++++....+....+++.|+++.|+++|.+++++.++..|+++|++++..+++.+..+++.
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~ 172 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence 56788999999999999999998875456778899999999999999998339999999999999999888899999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (454)
|+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+|+... +...
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999999999998888999999999999999999 5578899999999999999886 6666
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....+++|.|+.++.++++.++..++++|.+++...+.....+++.++++.|+.++.++++.++..|+++|++++.+.+
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 77778999999999999999999999999999998887777888889999999999999999999999999999999887
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
.....+++.++++.|+.+|.++ ++.++..|+|+|++++.++++..+.+++.++++.|+.++.++++.++..|+++|+++
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7777888889999999999999 999999999999999998888888888999999999999999999999999999999
Q ss_pred cCCCCH--HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHH
Q 012897 321 TSGGTH--EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIEN 398 (454)
Q Consensus 321 ~~~~~~--~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 398 (454)
+..+.+ +....+.+.|+++.|+.++.+++++++..++++|.+++..++...+.... ..+.+...+.+.|+++.|..
T Consensus 411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSCHHHHHHHHTTHHHHHHG
T ss_pred HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccc--cccHHHHHHHHcCcHHHHHH
Confidence 987655 77888889999999999999999999999999999999987754221000 23558899999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 399 LQSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 399 l~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
|+++++++++++|..+|++||..++++
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999877654
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3e-45 Score=353.33 Aligned_cols=421 Identities=61% Similarity=0.968 Sum_probs=375.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|+++|+.+|..|+..|+++++....+....+++. |+++.|+++|++++++.++..|+++|.+++..+++....+++
T Consensus 26 ~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 105 (450)
T 2jdq_A 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ 105 (450)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4567899999999999999999874335566777887 999999999999833999999999999999977888888889
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQP 159 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~ 159 (454)
.|+++.|+.+|+++++.++..++++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++++|++++... +..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999888889999999999999999955578999999999999999876 555
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 239 (454)
......+++|.++.++.++++.++..++++|.+++...+.....+.+.++++.++.++.++++.++..|+++|++++.+.
T Consensus 186 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 265 (450)
T 2jdq_A 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265 (450)
T ss_dssp CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence 55566899999999999999999999999999999887777778888899999999999999999999999999999987
Q ss_pred ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319 (454)
Q Consensus 240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 319 (454)
+...+.+++.|+++.|+.++.++ ++.+|..|+|+|++++.+++...+.+++.++++.|+.++.+++++++..|+++|++
T Consensus 266 ~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 266 DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788889999999999998 99999999999999999888888888889999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH
Q 012897 320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 399 (454)
Q Consensus 320 l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 399 (454)
++...+++....+.+.++++.|+.++++++++++..++++|.+++..++...+.... ..+.+...+.+.|+++.|..+
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~l~~l 422 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFL 422 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS--CCCHHHHHHHHHHCHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc--chhHHHHHHHHcCcHHHHHHH
Confidence 998766777888888999999999999999999999999999999877654321000 245688999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 400 QSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 400 ~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
++++++++++.|..++++||+.|+++
T Consensus 423 ~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 423 QSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999877654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.7e-39 Score=311.77 Aligned_cols=363 Identities=26% Similarity=0.409 Sum_probs=318.9
Q ss_pred Cccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 1 MVAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 1 lv~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
||++|+ ++++.+|..|+|+|++++++. ++....+++.|++|.|+++|.+++ +++++.|+++|++++.++++.+..+.
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356776 566999999999999999876 677888999999999999999999 99999999999999998899999999
Q ss_pred hCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcC
Q 012897 80 DHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCR 154 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~ 154 (454)
+.|+++.|+.++.+++ ..+++.++|++.+++.............++++.|++++ .+.+++++..++|+|++|+.
T Consensus 183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTD 261 (510)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTS
T ss_pred HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence 9999999999998754 45788999999999976654444444456789999999 77889999999999999998
Q ss_pred CCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHh
Q 012897 155 GKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVG 233 (454)
Q Consensus 155 ~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 233 (454)
..... ......++++.|+.++.+.+..++..++++|++++..++.....+++.|+++.|+.++.++++.++..|+++|+
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 75322 33345789999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHH
Q 012897 234 NIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKE 312 (454)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 312 (454)
|++.+++.....+.+.|+++.|+.++.+. +..+|..|+|+|+|++. ++.+.+..+++.|+++.|++++...+++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 99998888888899999999999999999 99999999999999997 57888888999999999999999999999999
Q ss_pred HHHHHHHhcCCC-----CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 313 AAWAISNATSGG-----THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 313 a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
++++|.|++..+ .......+.+.|+++.|..+..+++.++...|...|.+.+..+
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999997521 2234455667899999999999999999999999999998543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-38 Score=310.53 Aligned_cols=362 Identities=26% Similarity=0.408 Sum_probs=318.7
Q ss_pred ccccc-CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVW-SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~-s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+++|+ ++++.+|..|+++|.+++++. +.....+++.|++|.|+.+|.+++ +++++.|+|+|++++..+++.+..+.+
T Consensus 125 v~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~~i~~ 202 (529)
T 3tpo_A 125 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIK 202 (529)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 55675 566999999999999999886 566788999999999999999999 999999999999999988999999999
Q ss_pred CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 81 HGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
.|+++.|+.+|..++ ..+.+.++|++.+++.............++++.|+.++ .+.+++++..++|+|.+++..
T Consensus 203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~ 281 (529)
T 3tpo_A 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG 281 (529)
T ss_dssp TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSS
T ss_pred cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhh
Confidence 999999999998643 45788999999999977654444444556789999999 778899999999999999987
Q ss_pred CCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhH
Q 012897 156 KPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGN 234 (454)
Q Consensus 156 ~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 234 (454)
... .......+++|.|+.++.++++.++..++++|++++..++.....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus 282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361 (529)
T ss_dssp CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 532 2334457899999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHH
Q 012897 235 IVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEA 313 (454)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 313 (454)
++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++. ++++.+..+++.|+++.|++++...+++++..+
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~ 440 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 440 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence 9998888888899999999999999999 99999999999999997 578888889999999999999999999999999
Q ss_pred HHHHHHhcCC----CC-HHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 314 AWAISNATSG----GT-HEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 314 ~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
+++|.++... +. ......+.+.|+++.|..+..+++.++...|...|.+.+..+
T Consensus 441 L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 441 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999742 12 334455667899999999999999999999999999987543
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4e-38 Score=301.65 Aligned_cols=365 Identities=19% Similarity=0.204 Sum_probs=308.9
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
.+|.|+.+|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4899999999998 899999999999999877788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhh--------cC--------CChhHH
Q 012897 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLV--------HS--------NDEEVL 183 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll--------~~--------~~~~v~ 183 (454)
+.+.|+++.|+++|..+.++++++.++|+|++|+.++........ |++|.|+.++ .+ .++.+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995477899999999999999998443333444 9999999999 32 246677
Q ss_pred HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhcc------------------
Q 012897 184 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG------------------ 238 (454)
Q Consensus 184 ~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~------------------ 238 (454)
..++|+|.|++.. ++....+.+. |+++.|+.++.+ .+..+...++.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999975 4667888898888888631
Q ss_pred --------------------------------CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--
Q 012897 239 --------------------------------DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-- 284 (454)
Q Consensus 239 --------------------------------~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~-- 284 (454)
.+...+.+++.++++.++.+|.+..++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1223445667788999999998775789999999999999985432
Q ss_pred -HH-HHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH------HHHHH
Q 012897 285 -QI-QAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP------RIVTV 355 (454)
Q Consensus 285 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~------~v~~~ 355 (454)
.. +..+ +.|++|.|++++.+++.++++.|+|+|.|++.. .+ ...++..++++.|+++|...++ ++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3444 689999999999999999999999999999884 23 3455667899999999998653 68889
Q ss_pred HHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCC
Q 012897 356 CLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 356 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 423 (454)
++++|.+++..... ....+.+.|++++|.+|+.++ ++++++.|.++|+.||...+
T Consensus 397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999864332 577888999999999999999 99999999999999997654
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-38 Score=314.55 Aligned_cols=411 Identities=16% Similarity=0.114 Sum_probs=333.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHH----cCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcCCCchhh
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ----SGVVPRFVEFLMRE--DYPQLQFEAAWALTNIASGTSENT 75 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~~l~~L~~lL~~~--~~~~v~~~a~~~L~~l~~~~~~~~ 75 (454)
+..++++++.+|..|+.+|.++.+....+.....+. ..+++.++++|.++ + ++++..|+++|.+++. .++.+
T Consensus 336 ~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk 413 (810)
T 3now_A 336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECK 413 (810)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHH
Confidence 456778889999999999999986431111101111 23477899999988 6 8999999999999999 66666
Q ss_pred HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-----------------------------hhH---HHHHh
Q 012897 76 KVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-----------------------------RCR---DLVLS 122 (454)
Q Consensus 76 ~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~ 122 (454)
..++ +.|+++.|+.+|++++..++..++++|.||+.+.+ ..+ +.+.+
T Consensus 414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 6666 57999999999999999999999999999997542 122 67788
Q ss_pred cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHH
Q 012897 123 QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQ 202 (454)
Q Consensus 123 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 202 (454)
.|+++.|+.++ .++++.+++.|+|+|.+++.+.+........|++|.|+.++.++++..+..|+|+|.+++...+....
T Consensus 494 aGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 494 EGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp TTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 99999999999 67889999999999999997655555566689999999999999999999999999999865432211
Q ss_pred H--HHHhCcHHHHHHhcCCCCC-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 203 A--VIEAGVCPRLVELLGHPSP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 203 ~--~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
. ....++++.|+.+|.++.. ..+..|+++|.|++..++.....+++.|+++.|..+|.++ ++.++..|+++|+|++
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 0 0113589999999986533 3346899999999998877788899999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHhhccCCCCHHHHHHHH
Q 012897 280 AGNRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR-EGCIKPLCDLFVCPDPRIVTVCL 357 (454)
Q Consensus 280 ~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~~l~~~~~~v~~~al 357 (454)
.+ ++....+++ .|.++.|+.++.+++..++..|+|+|.+++.. .+...+.+.+ .|+++.|+.++.+++++++..++
T Consensus 652 ~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~ 729 (810)
T 3now_A 652 MS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729 (810)
T ss_dssp TS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred CC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence 76 455556664 68999999999999999999999999999885 4567788888 89999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC---CHHHHHHHHHHHHHhcCcCCCccccCCC
Q 012897 358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD---NNEIYEKAVKILETYWLEEDDETIAAGD 431 (454)
Q Consensus 358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 431 (454)
+++.|+...... ....+.+.|+++.|.++...+ +.++.+.|...|+.+.....-+.-++++
T Consensus 730 ~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~~~~ 793 (810)
T 3now_A 730 VIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAE 793 (810)
T ss_dssp HHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCCccc
Confidence 999999874321 467889999999999997544 7999999999999988755444333333
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.8e-38 Score=310.64 Aligned_cols=361 Identities=15% Similarity=0.131 Sum_probs=311.1
Q ss_pred cccccCC--CHHHHHHHHHHHHHHhccCCCCcHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-----
Q 012897 2 VAGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE----- 73 (454)
Q Consensus 2 v~~L~s~--d~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~----- 73 (454)
+++|.++ |++++..|+++|..++.. .+....++ +.|++|.|+++|++++ +.++..|+++|.|++.+.++
T Consensus 383 ~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~ 459 (810)
T 3now_A 383 RRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLP 459 (810)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhH
Confidence 3456666 899999999999999876 45555555 5799999999999988 89999999999999985421
Q ss_pred ------------------------hh---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897 74 ------------------------NT---KVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL 126 (454)
Q Consensus 74 ------------------------~~---~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 126 (454)
.+ +.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ +.++..+.+.|++
T Consensus 460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gai 538 (810)
T 3now_A 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGV 538 (810)
T ss_dssp SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHH
T ss_pred HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence 12 6788999999999999999999999999999999965 5699999999999
Q ss_pred HHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC-h--hhhhchHHHHHHhhcCCCh-hHHHHHHHHHHHhccCChHHHH
Q 012897 127 IPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP-F--DQVRPALPALAQLVHSNDE-EVLTDACWALSYLSDGTNDKIQ 202 (454)
Q Consensus 127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~--~~~~~~l~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~ 202 (454)
++|+.++ .+.++..++.|+|+|.+++....... + ....+++|.|+.+|.++.. ..+..++++|.|++..++....
T Consensus 539 p~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 539 KALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999 66677899999999999987532111 1 1235689999999986633 4467899999999998888888
Q ss_pred HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
.+++.|+++.|+.++.++++.++..|+++|+|++.+.+.. ..+.+ .+.++.|+.++.++ +..+|..|+|+|+|++.+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999876543 44454 68999999999998 999999999999999997
Q ss_pred CHHHHHHHHh-CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC---CHHHHHHHH
Q 012897 282 NRDQIQAVID-AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP---DPRIVTVCL 357 (454)
Q Consensus 282 ~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~---~~~v~~~al 357 (454)
++...+.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. +.+...++.+.|+++.|..+++.+ ++++++.++
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al 774 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence 8888889998 89999999999999999999999999999985 567889999999999999999765 689999999
Q ss_pred HHHHHHHHhhhhh
Q 012897 358 EGLENILKVGEAE 370 (454)
Q Consensus 358 ~~L~~l~~~~~~~ 370 (454)
.+|.++++.+.-.
T Consensus 775 ~aL~~ll~~g~~~ 787 (810)
T 3now_A 775 QCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCcc
Confidence 9999999876543
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2e-36 Score=297.75 Aligned_cols=394 Identities=18% Similarity=0.193 Sum_probs=334.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++.+++ +.++..++.+|.+++..+++.+..+.+.
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~ 184 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILAS 184 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 56788999999999999999999885 456777788999999999999988 8999999999999999889999999999
Q ss_pred CChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 82 GAVPIFVKLLASP-SDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
|+++.|+.++++. ....+..++.+|.+++. .+..+..+.+.|+++.++.++ .+.++.++..++|+|.+++...+..
T Consensus 185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~- 261 (529)
T 1jdh_A 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ- 261 (529)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred CCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh-
Confidence 9999999999874 46677788999999985 456788888999999999999 5568899999999999999876332
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhcc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~ 238 (454)
....+++|.++.++.+++++++..++++|.+++...+.....+.+.++++.++.++.+ .++.++..++++|++++..
T Consensus 262 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 262 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred -HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 2346899999999999999999999999999999887788889999999999999975 3478999999999999986
Q ss_pred Ccc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHH
Q 012897 239 DDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAW 315 (454)
Q Consensus 239 ~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 315 (454)
.+. ....+.+.++++.|+.+|.++.++.++..++|+|+|++.+.. ....+.+.|+++.|+.++.++++++|..|+|
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 419 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence 543 345677889999999999988346999999999999998644 3467889999999999999888888887777
Q ss_pred HHHH----------------------hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 316 AISN----------------------ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 316 aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
++.| ++. .++....+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~------- 490 (529)
T 1jdh_A 420 GGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------- 490 (529)
T ss_dssp ------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-------
T ss_pred ccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-------
Confidence 7666 443 345556788899999999999999999999999999998732
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
+.+...+.+.|+++.|..++++++++++.+|.+++.++
T Consensus 491 -------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 -------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp -------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 12577889999999999999999999999999999875
No 12
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=290.01 Aligned_cols=359 Identities=19% Similarity=0.195 Sum_probs=296.1
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHHHHHHHHHhcCC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDY-----------PQLQFEAAWALTNIASG 70 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----------~~v~~~a~~~L~~l~~~ 70 (454)
++.+.+.|++ ...+.|..+... .+....+++.|.+|.|+++|+..+. ++++..|+|+|.|++.+
T Consensus 38 ~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~ 112 (458)
T 3nmz_A 38 LSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS 112 (458)
T ss_dssp -------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc
Confidence 4566777776 355666666555 4556889999999999999997542 79999999999999998
Q ss_pred CchhhHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChhhHHHHHhcCCh
Q 012897 71 TSENTKVVIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAGDSPRCRDLVLSQGAL 126 (454)
Q Consensus 71 ~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~~~i 126 (454)
.++......+.+++ +.+++++.+.+ .+ +++ +|+|+|.|++.+ +++|+.+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l 191 (458)
T 3nmz_A 113 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGL 191 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHH
T ss_pred CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCH
Confidence 88888887777777 66777777642 22 544 999999999655 8899999999999
Q ss_pred HHHHHHhch----------hhhhhHHHHHHHHHHhhcCCCCCCChhh--hhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 127 IPLLAQLNE----------RAKLSMLRNATWTLSNFCRGKPQPPFDQ--VRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 127 ~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
+.|+.++.. ..++.+++.|+|+|.+|+.+.+...... ..|++|.|+.+|++++++++..++++|.|++
T Consensus 192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 271 (458)
T 3nmz_A 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 271 (458)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 999999942 2457899999999999998764333232 3567999999999999999999999999999
Q ss_pred cC-ChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCCcch---hHH
Q 012897 195 DG-TNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKK---SIK 268 (454)
Q Consensus 195 ~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~~---~v~ 268 (454)
.. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+|++.+++..+..+. ..|+++.|+.+|.++.+. .++
T Consensus 272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 85 556777888999999999975 556788999999999999985544555555 789999999999877222 499
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhcc
Q 012897 269 KEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLF 345 (454)
Q Consensus 269 ~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l 345 (454)
+.|+|+|.|++. ++++.++.+.+.|+++.|+.++.+++..++++|+|+|.|++.. +++....+.+.|+++.|++++
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence 999999999997 7888898999999999999999999999999999999999864 678888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 012897 346 VCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 346 ~~~~~~v~~~al~~L~~l~~~~ 367 (454)
.+++++++..++++|.+++...
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCC
T ss_pred hCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999754
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=294.71 Aligned_cols=388 Identities=18% Similarity=0.197 Sum_probs=331.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ +.++..++.+|.+++..+++.+..+.+
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~ 180 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA 180 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356788999999999999999999885 566777888999999999999998 899999999999999878999999999
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.|+++.|+.++++.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..+++.++++|.+++...+..
T Consensus 181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~ 258 (644)
T 2z6h_A 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ 258 (644)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh
Confidence 999999999998754 7788999999999985 556788999999999999999 5568899999999999999875332
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC--CCcchhhHHHHHhHhhc
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP--SPSVLIPALRTVGNIVT 237 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~ 237 (454)
....++++.|+.++.+.++.++..++++|.+++...+.....+.+.++++.|+.++.+. .+.++..|+++|++++.
T Consensus 259 --~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 259 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp --CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 33468999999999999999999999999999998877788899999999999999763 26899999999999997
Q ss_pred cCcc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch-------
Q 012897 238 GDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF------- 307 (454)
Q Consensus 238 ~~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------- 307 (454)
..+. ....+.+.++++.|+.+|.++.++.+++.++|+|+|++.+... ...+++.++++.|++++...+.
T Consensus 337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence 5442 2334677899999999999884479999999999999986444 4778899999999999987554
Q ss_pred ---------------hhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897 308 ---------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN 372 (454)
Q Consensus 308 ---------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~ 372 (454)
+++..++.+|.+++. .......+.+.++++.|+.++.++++.++..++++|.++....
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~----- 488 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK----- 488 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH-----
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH-----
Confidence 455566666777765 3455667788999999999999999999999999999987431
Q ss_pred ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHH
Q 012897 373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKA 411 (454)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 411 (454)
..+..+.+.|+++.|..++++++++++..|
T Consensus 489 ---------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A 518 (644)
T 2z6h_A 489 ---------EAAEAIEAEGATAPLTELLHSRNEGVATYA 518 (644)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred ---------HHHHHHHHcCChhHHHHHHcCCCHHHHHHH
Confidence 257788999999999999999999996643
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.6e-35 Score=282.97 Aligned_cols=369 Identities=18% Similarity=0.211 Sum_probs=304.7
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chh
Q 012897 37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPR 115 (454)
Q Consensus 37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 115 (454)
..+.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+|+.|+.+|.++++.+++.|+++|.||+.. ++.
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4578999999999998 99999999999999988899999999999999999999999999999999999999975 688
Q ss_pred hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc------------------C
Q 012897 116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH------------------S 177 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~------------------~ 177 (454)
.+..+.+.|+++.|+++|....+.++++.++++|++|+..+. .+.....+++|.|+.++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 999999999999999999655678899999999999998643 333344678999999761 2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhccCc----------
Q 012897 178 NDEEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTGDD---------- 240 (454)
Q Consensus 178 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~---------- 240 (454)
.++.++.++.++|.|++...+.....+.+. |+++.|+.++.+ .+....+.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999998877766777764 667799998864 456788999999999986521
Q ss_pred ---------------cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCH---HHHHHHH-hCCChHHHHHH
Q 012897 241 ---------------FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNR---DQIQAVI-DAGLVGPLVNL 301 (454)
Q Consensus 241 ---------------~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~l 301 (454)
...+.+++.+.++.++.+|.+..++.+++.|+|+|.|++.+.. ...+..+ +.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1122334445677889999654488999999999999997642 2223344 56889999999
Q ss_pred hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC--------CHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--------DPRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~--------~~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
+.+++..++..|+++|.|++..... . .++..++++.|+.+|.++ ..+++..++++|.|++.....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~--~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARN--K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSC--H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhH--H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 9999999999999999999986532 2 334778999999999876 367888999999999865433
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCC
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~ 423 (454)
....+.+.|+++.|.+++.+. .+.+++.|.+++..+|...+
T Consensus 437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 356778899999999998875 89999999999999986443
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=6.3e-35 Score=286.59 Aligned_cols=365 Identities=25% Similarity=0.364 Sum_probs=321.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhhHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhh
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 116 (454)
..++.|++.|.+++ +.++..|+++|.+++.... .....++..|+++.|+.+|.+++ +.++..|+|+|++++...+..
T Consensus 74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 45899999999998 9999999999999976444 67788899999999999999876 999999999999999988889
Q ss_pred HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhc
Q 012897 117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~ 194 (454)
+..+...|+++.|+.++ .++++.++..++|+|++++.+.+. .......++++.|+.++ .+.++.++..++++|.+++
T Consensus 153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 667899999999999999976532 33344568999999999 6778999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
...+.. ......++++.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT 309 (528)
T ss_dssp CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence 875332 2234579999999999999999999999999999988777777888999999999999999 89999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897 275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 353 (454)
Q Consensus 275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 353 (454)
|+|++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.. ..+....+...++++.|+.++.+++++++
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 9999998888888899999999999999998 999999999999999985 66777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
..++++|.++...+... ....+.+.|+++.|..++.+++++++..+...+..++.
T Consensus 389 ~~a~~aL~nl~~~~~~~------------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 389 KEAAWAISNATSGGSHD------------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHHSCHH------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHH------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999998764322 45667789999999999999999999988888776653
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.6e-34 Score=283.66 Aligned_cols=371 Identities=24% Similarity=0.341 Sum_probs=323.2
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCh
Q 012897 37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSP 114 (454)
Q Consensus 37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~ 114 (454)
..+.++.|++.|++++ ++++..|+++|.++.... ......+++.|+++.|+.+|.++ ++.++..|+++|++++...+
T Consensus 85 ~~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp --CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 4467999999999998 999999999999997632 44567788899999999999997 89999999999999998888
Q ss_pred hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 012897 115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 193 (454)
Q Consensus 115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l 193 (454)
..+..+...|+++.|+.++ .++++.++..|+|+|++++...+ ........++++.|+.++.+.++.++..++++|.++
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8888898999999999999 67789999999999999998742 233334578999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHH
Q 012897 194 SDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACW 273 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~ 273 (454)
+.............++++.|+.++.++++.++..++++|++++...+.....+++.++++.|+.+|.++ ++.++..|++
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~ 321 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR 321 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence 976522223455579999999999999999999999999999987776777788889999999999988 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHH
Q 012897 274 TISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIV 353 (454)
Q Consensus 274 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~ 353 (454)
+|++++.+++...+.+++.|+++.|+.++.++++.++..|+|+|++++.. .++....+.+.++++.|+.++.+++++++
T Consensus 322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 400 (530)
T 1wa5_B 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTK 400 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 99999998888888888899999999999999999999999999999975 55677778889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897 354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
..++++|.++...+... ......+.+.|+++.|..++.+++++++..|.+.+..++..
T Consensus 401 ~~a~~aL~~l~~~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 401 KEACWAISNASSGGLQR----------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHHTTTC----------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999764320 01355666799999999999999999999999998887753
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.2e-36 Score=289.40 Aligned_cols=361 Identities=25% Similarity=0.335 Sum_probs=315.0
Q ss_pred cccccCC-CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWSD-DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s~-d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|+++ ++.+|..|+++|.+++... .+....+++.|+++.|+++|++++ +.++..|+++|++++...++.+..+.+
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4567777 8999999999999999864 455667788999999999999998 999999999999999988889999999
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC-
Q 012897 81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP- 157 (454)
Q Consensus 81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~- 157 (454)
.|+++.|+.++.+ +++.++..++++|++++... +..+... ..++++.++.++ .+.++.++..++|+|.+++...+
T Consensus 148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPND 225 (450)
T ss_dssp TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcH
Confidence 9999999999996 78999999999999999665 3322222 267899999999 66788999999999999998642
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
........++++.++.++.++++.++..++++|++++...+...+.+.+.++++.++.++.++++.++..|+++|++++.
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 22233346899999999999999999999999999999888777778888999999999999999999999999999998
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWA 316 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 316 (454)
+++...+.+++.++++.++.+|.++ ++.+|..|+|+|+|++.+ +++..+.+++.++++.|+.++..++++++..++++
T Consensus 306 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 306 GNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 8777777788889999999999988 999999999999999974 67888888889999999999999999999999999
Q ss_pred HHHhcCCCCH----------HHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 317 ISNATSGGTH----------EQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 317 L~~l~~~~~~----------~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
|.+++..... .....+.+.|+++.|..+..+++++++..++.+|.+++...
T Consensus 385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999874322 23456777899999999999899999999999999998543
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.3e-36 Score=291.13 Aligned_cols=358 Identities=16% Similarity=0.186 Sum_probs=295.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+++.|+++|+++|..|+++|.+++... ++....+.+.|++|.|+++|++++ +.++..|+++|.+++..+++++..+++
T Consensus 7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 367789999999999999999998664 444668899999999999999988 999999999999999977999999999
Q ss_pred CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch--------h-------hhhhHHHH
Q 012897 81 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------R-------AKLSMLRN 144 (454)
Q Consensus 81 ~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~~~~~ 144 (454)
.|+++.|+.+|. ++++++++.++|+|+||+.+ +..+..+.+ |+++.|++++.. . .+.++++.
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 999999999999 78999999999999999987 668888888 999999999931 1 24677889
Q ss_pred HHHHHHhhcCCCCCCChhhhh-chHHHHHHhhcC------CChhHHHHHHHHHHHhccCC--------------------
Q 012897 145 ATWTLSNFCRGKPQPPFDQVR-PALPALAQLVHS------NDEEVLTDACWALSYLSDGT-------------------- 197 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~-~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~-------------------- 197 (454)
++|+|++|+.++......... |+++.|+.++++ .+..++..++++|.+++...
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 999999999873222222333 899999999985 46678889999999986321
Q ss_pred ------------------------------hHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccCccch---
Q 012897 198 ------------------------------NDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDFQT--- 243 (454)
Q Consensus 198 ------------------------------~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~--- 243 (454)
+...+.+++.++++.++.+|.+ +++.+++.|+++|+|++.++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 0111223445677888888865 467899999999999998765432
Q ss_pred -hhh-hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcc------hhhHHHHHH
Q 012897 244 -QCI-ITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAE------FDIKKEAAW 315 (454)
Q Consensus 244 -~~~-~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~a~~ 315 (454)
+.. .+.++++.|+.+|.++ +..+++.|+|+|+|++.+ ++ .+.++..++++.|++++...+ .++...+++
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~ 399 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY 399 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence 223 3679999999999999 999999999999999975 33 345566789999999999864 368889999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC-CHHHHHHHHHHHHHHHHh
Q 012897 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCP-DPRIVTVCLEGLENILKV 366 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~-~~~v~~~al~~L~~l~~~ 366 (454)
+|.++.... ++....+.+.|+++.|+.++.++ +++++..|.+.|.+++..
T Consensus 400 ~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 400 TVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 999998764 46778888889999999999999 999999999999999854
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.6e-34 Score=289.91 Aligned_cols=396 Identities=18% Similarity=0.189 Sum_probs=335.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ ..++..++.+|.+++..+++.+..+.+
T Consensus 239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~ 316 (780)
T 2z6g_A 239 LVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA 316 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 356788999999999999999999885 456666778999999999999988 899999999999999878899999999
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 81 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+...|+++.|+.++ .+.+..++..++++|.+++.....
T Consensus 317 ~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~- 393 (780)
T 2z6g_A 317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK- 393 (780)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-
Confidence 999999999999755 55677889999999864 55788888999999999999 566788999999999999987633
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCC-cchhhHHHHHhHhhc
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSP-SVLIPALRTVGNIVT 237 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~-~v~~~a~~~L~~l~~ 237 (454)
.....++++.|+.++.+.++.++..++++|.+++...+.....+.+.++++.|+.++.+ ++. .++..|+++|++++.
T Consensus 394 -~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 394 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 22346899999999999999999999999999999888788888899999999999976 333 899999999999987
Q ss_pred cCccc---hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcch-------
Q 012897 238 GDDFQ---TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEF------- 307 (454)
Q Consensus 238 ~~~~~---~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------- 307 (454)
..+.. ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.++++
T Consensus 473 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 55432 346777899999999999883459999999999999975 4445678889999999999987543
Q ss_pred ---------------hhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 012897 308 ---------------DIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKN 372 (454)
Q Consensus 308 ---------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~ 372 (454)
+++..++.+|.+++. ++.....+.+.++++.|+.++.++++.++..++.+|.++...
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~------ 623 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD------ 623 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS------
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------
Confidence 456677778888875 456667778899999999999999999999999999999732
Q ss_pred ccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 373 MGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 373 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
...+..+.+.|+++.|.+++++++++++..|.++|.++.
T Consensus 624 --------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 624 --------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp --------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 125778999999999999999999999877655554433
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.3e-35 Score=285.10 Aligned_cols=360 Identities=19% Similarity=0.194 Sum_probs=296.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-CchhhHHHH
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKVVI 79 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~ 79 (454)
+|++|+++|+++|..|+++|.+++... .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.+ +++++..++
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 467899999999999999999999765 677888999999999999999999 99999999999999985 689999999
Q ss_pred hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-----------------hhhhhhH
Q 012897 80 DHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-----------------ERAKLSM 141 (454)
Q Consensus 80 ~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~~~~~~ 141 (454)
+.|+|+.|+.+|.+ .+.++++.++++|++|+. .+..+..+.. ++++.|++++. ...++++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 99999999999997 678999999999999987 4567777775 56999999872 1125789
Q ss_pred HHHHHHHHHhhcCCCCC-CChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccCChHH-------------
Q 012897 142 LRNATWTLSNFCRGKPQ-PPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDGTNDK------------- 200 (454)
Q Consensus 142 ~~~a~~~L~~l~~~~~~-~~~~~-~~~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~------------- 200 (454)
+..++++|.||+...+. ..... ..|+++.|+.++++ .+...+++|+++|.|++......
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 99999999999987633 23232 35778899999874 46789999999999998652110
Q ss_pred ------------HHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccc----hhhhhccCChHHHHHhhcCCc
Q 012897 201 ------------IQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQ----TQCIITYGALPYLLGLLTHSH 263 (454)
Q Consensus 201 ------------~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~l~~L~~~L~~~~ 263 (454)
...+...++++.++.+|. ..++.+++.|+++|.|++.+.... ...+.+.++++.|+.+|.++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~- 367 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE- 367 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-
Confidence 111223345677888885 467899999999999999865322 22344578899999999999
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--------chhhHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 012897 264 KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--------EFDIKKEAAWAISNATSGGTHEQIKYLVRE 335 (454)
Q Consensus 264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 335 (454)
+..+++.|+|+|+|++.+.. . +..+..++++.|+++|.++ +.+++..|+++|.|++.. ++++.+.+.+.
T Consensus 368 ~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~ 444 (584)
T 3l6x_A 368 HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRET 444 (584)
T ss_dssp CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence 89999999999999998643 2 2445778999999999876 357889999999999875 67888899999
Q ss_pred CCcHHHhhccCCC--CHHHHHHHHHHHHHHHHhhh
Q 012897 336 GCIKPLCDLFVCP--DPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 336 ~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~~~~ 368 (454)
|+++.|+.++.++ .+.+++.|.++|.++....+
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 9999999999986 78999999999999986544
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.2e-34 Score=283.25 Aligned_cols=397 Identities=16% Similarity=0.160 Sum_probs=330.9
Q ss_pred cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|++ +|++++..|+.+|.+++.. .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..++..+..+.+
T Consensus 65 v~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 65 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345654 5899999999999998766 457888899999999999999999 999999999999999966778888889
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++........+..++.+|.+++..+....
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 221 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999988888999999999999999999666667788889999999997654444
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....++++.++.++.++++.++..++++|.+++...+.. . ...++++.|+.++.+++++++..++++|++++..++
T Consensus 222 ~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 4455789999999999999999999999999999765432 1 123689999999999999999999999999998877
Q ss_pred cchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHH---HHHHHHhCCChHHHHHHhhhcc-hhhHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAW 315 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~ 315 (454)
.....+.+.++++.|+.+|.+.. ++.++..|+++|+|++..+++ ....+.+.|+++.|++++.+++ +.++..++|
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~ 378 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence 77888889999999999997631 478999999999999875432 3556778999999999999876 599999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH----------------------HHHhhhhhhhc
Q 012897 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN----------------------ILKVGEAEKNM 373 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~----------------------l~~~~~~~~~~ 373 (454)
+|+|++... +....+.+.|+++.|+.++.+++++++..+.|++.+ +...
T Consensus 379 ~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~------- 449 (529)
T 1jdh_A 379 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD------- 449 (529)
T ss_dssp HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-------
Confidence 999999853 334677889999999999998777777766666555 3221
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
...+..+.+.|+++.|..++.+++++++..|.+.+..+..
T Consensus 450 -------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 450 -------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp -------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred -------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1135568889999999999999999999999999888764
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=268.37 Aligned_cols=314 Identities=19% Similarity=0.175 Sum_probs=265.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCH----------HHHHHhhcCCC-Chh-----HHH-------HHHHHH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVV----------PRFVEFLMRED-YPQ-----LQF-------EAAWAL 64 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l----------~~L~~lL~~~~-~~~-----v~~-------~a~~~L 64 (454)
++++++..|+|+|++++++. ++..+...+.+++ +.+++++.+.. +.+ +++ +|+|+|
T Consensus 94 ~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL 172 (458)
T 3nmz_A 94 GSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL 172 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHH
Confidence 44799999999999999997 6667777777777 66777777652 122 444 999999
Q ss_pred HHhcCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHH
Q 012897 65 TNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQ 132 (454)
Q Consensus 65 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~ 132 (454)
.|++. ++++|+.+.+.|+++.|+.+|.. .++.+++.|+|+|.|||.+.+..+..+.. .|.++.|+++
T Consensus 173 ~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L 251 (458)
T 3nmz_A 173 MKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251 (458)
T ss_dssp HHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred HHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence 99987 69999999999999999999941 34789999999999999888777776654 4559999999
Q ss_pred hchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHH-HhC
Q 012897 133 LNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAG 208 (454)
Q Consensus 133 l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~ 208 (454)
| .+.+++++..++|+|++|+... .........|++|.|+.+| ++.++.++..++.+|.|++...++....+. ..|
T Consensus 252 L-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G 330 (458)
T 3nmz_A 252 L-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330 (458)
T ss_dssp G-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred H-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 9 6788999999999999999752 2233444579999999975 567889999999999999985555545565 689
Q ss_pred cHHHHHHhcCCCCCc----chhhHHHHHhHhhc---cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q 012897 209 VCPRLVELLGHPSPS----VLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG 281 (454)
Q Consensus 209 ~i~~L~~ll~~~~~~----v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~ 281 (454)
+++.|+.+|.++++. ++..|+++|.|++. .++..++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.+
T Consensus 331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcC
Confidence 999999999886653 89999999999996 6777888889999999999999999 899999999999999988
Q ss_pred CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897 282 NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 282 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 325 (454)
+++.+..+++.|+++.|++++.++++.+++.|+++|.|++...+
T Consensus 410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 89999999999999999999999999999999999999998653
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=282.06 Aligned_cols=397 Identities=17% Similarity=0.167 Sum_probs=335.6
Q ss_pred cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|++ ++++++..|+.+|.+++.. .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~ 138 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL 138 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 445665 4899999999999988766 457888889999999999999998 999999999999999866778888889
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|+++.|+.+|+++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|++++.......
T Consensus 139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~ 218 (644)
T 2z6h_A 139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218 (644)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999987888899999999999999999766667888999999999997655555
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....++++.++.++.+.+..++..++++|.+++...+.. ....++++.|+.++.++++.++..++++|++++..++
T Consensus 219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 5556789999999999999999999999999999764321 1122679999999999999999999999999999877
Q ss_pred cchhhhhccCChHHHHHhhcCCcc-hhHHHHHHHHHHHHhcCCH---HHHHHHHhCCChHHHHHHhhhcc-hhhHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNR---DQIQAVIDAGLVGPLVNLLQNAE-FDIKKEAAW 315 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~ 315 (454)
..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++...+ .....+.+.++++.|++++.+++ +.+++.++|
T Consensus 296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 777888899999999999987423 7999999999999997433 22334668899999999999874 799999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~----------------------~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
+|.|++... +....+.+.++++.|++++...+ .+++..++.+|.++.....
T Consensus 376 ~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~----- 448 (644)
T 2z6h_A 376 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH----- 448 (644)
T ss_dssp HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred HHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-----
Confidence 999999853 33477789999999999987643 4566677777777775431
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
.+..+.+.|+++.|..++.+.+++++..|...+..+..
T Consensus 449 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 449 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp ---------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999988777654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.9e-33 Score=283.69 Aligned_cols=396 Identities=17% Similarity=0.178 Sum_probs=333.0
Q ss_pred cccccC-CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 2 VAGVWS-DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 2 v~~L~s-~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
++.|++ +|++++..|+.+|.+++.. ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 345654 4899999999999998766 455778889999999999999998 999999999999999977788888889
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.|+++.|+.+|.+++..++..++.+|.+++..++..+..+.+.++++.|+.++........+..++.+|.+|+.......
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 99999999999999999999999999999988888888999999999999999666666777889999999997654444
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....++++.|+.++.+.++.++..++++|.+++...... ....++++.|+.++.++++.++..|+++|++++.+++
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 4455789999999999999999999999999999765421 1123678999999999999999999999999999877
Q ss_pred cchhhhhccCChHHHHHhhcCCcc-hhHHHHHHHHHHHHhcCCHH---HHHHHHhCCChHHHHHHhhhcch-hhHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHK-KSIKKEACWTISNITAGNRD---QIQAVIDAGLVGPLVNLLQNAEF-DIKKEAAW 315 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~ 315 (454)
..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++...++ ....+...++++.|++++.+++. .++..|+|
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 778888899999999999986423 48999999999999874333 23466788999999999998764 99999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 316 AISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD----------------------PRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 316 aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~----------------------~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
+|+|++.. ......+.+.++++.|+.++.+.+ ++++..++.+|.++.....
T Consensus 512 aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~----- 584 (780)
T 2z6g_A 512 LIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH----- 584 (780)
T ss_dssp HHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred HHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh-----
Confidence 99999973 455577888999999999987543 3466677778887763211
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
.+..+.+.|+++.|..++.+++++++..|...+..+.
T Consensus 585 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 585 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp ---------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3567888999999999999999999999988877654
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=8.2e-30 Score=233.10 Aligned_cols=270 Identities=21% Similarity=0.191 Sum_probs=234.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 012897 54 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNVAGDSPRCRDLVLS 122 (454)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 122 (454)
...+..|+++|.+++. ++++|+.+++.|+++.|+.+|.. .++.+++.|+|+|.||+...+..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556789999999999 58999999999999999999942 34789999999999999888777777754
Q ss_pred -cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC--CCCChhhhhchHHHHHHh-hcCCChhHHHHHHHHHHHhccCCh
Q 012897 123 -QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--PQPPFDQVRPALPALAQL-VHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 123 -~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
.|.++.|+++| .+++++++..++|+|++|+... .........|++|.|+.+ +++.++.+++.++.+|.|++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45599999999 6788999999999999999752 223344457999999997 567789999999999999998665
Q ss_pred HHHHHHH-HhCcHHHHHHhcCCCCC----cchhhHHHHHhHhhc---cCccchhhhhccCChHHHHHhhcCCcchhHHHH
Q 012897 199 DKIQAVI-EAGVCPRLVELLGHPSP----SVLIPALRTVGNIVT---GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE 270 (454)
Q Consensus 199 ~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~ 270 (454)
+....+. ..|+++.|+.+|.++++ +++..|+++|.|++. .++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 5555566 68999999999987655 389999999999996 5777888899999999999999998 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCH
Q 012897 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
|+|+|.|++.++++.++.+++.|+++.|++++.++++.+++.|+++|.|++...+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988899999999999999999999999999999999999999987544
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.9e-30 Score=235.27 Aligned_cols=274 Identities=19% Similarity=0.157 Sum_probs=237.4
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----------CChhHHHHHHHHHHHhcCCCchhhHHH
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----------DYPQLQFEAAWALTNIASGTSENTKVV 78 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~ 78 (454)
+...+..|+++|.+++.. ++.++.+++.|+++.|+.+|..+ .++.++..|+++|.+++..++..+..+
T Consensus 45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345666899999999877 67899999999999999999521 227899999999999999777677777
Q ss_pred HhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 79 IDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 79 ~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
... |++|.|+.+|+++++++++.++++|.+|+.. ++..+..+.+.|+++.|+++|..+.+.++++.++++|++|+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 554 5699999999999999999999999999974 56788999999999999998756678899999999999999844
Q ss_pred -CCCChhh-hhchHHHHHHhhcCCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhcCCCCCcchhh
Q 012897 157 -PQPPFDQ-VRPALPALAQLVHSNDE----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLGHPSPSVLIP 227 (454)
Q Consensus 157 -~~~~~~~-~~~~l~~l~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 227 (454)
....... ..|++|.|+.+|.+.++ +++..++++|.|++. ..++....+.+.|+++.|+.+|.+++..+++.
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 2222333 57999999999987755 489999999999996 56777788999999999999999999999999
Q ss_pred HHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 228 ALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 228 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
|+++|+|++.+++..+..+.+.|+++.|+.+|.++ +..+++.|+|+|.|++.+.+..
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999987888888899999999999999999 9999999999999999875543
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=4.7e-27 Score=207.77 Aligned_cols=240 Identities=30% Similarity=0.427 Sum_probs=221.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
|.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|+.+++++++.++..++++|++++...+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 99999999999999997778999999999999999999999999999999999999988888999
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
.+.+.|+++.++.++ .+++++++..++++|.+++... .........++++.++.++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6778999999999999999654 33334445789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88778899999999999999999999999999999999998877788888999999999999998 99999999999999
Q ss_pred HhcC
Q 012897 278 ITAG 281 (454)
Q Consensus 278 l~~~ 281 (454)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9974
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1.2e-26 Score=205.27 Aligned_cols=241 Identities=29% Similarity=0.431 Sum_probs=222.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC-CCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK-PQPP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~ 160 (454)
|.++.|+.+|.+++++++..++++|.+++...+..+..+.+.|+++.+++++ .+.+++++..++++|.+++... ....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5689999999999999999999999999988888889999999999999999 6677999999999999999874 3334
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....++++.++.++.++++.++..++++|.+++...+.....+.+.|+++.++.++.++++.++..++++|++++...+
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 44557899999999999999999999999999998878888889999999999999999999999999999999999887
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
.....+.+.|+++.|+.++.++ ++.++..|+++|++++.+++.....+.+.|+++.|++++.++++.++..|+++|.++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 7777888999999999999988 999999999999999998888888999999999999999999999999999999999
Q ss_pred cCCC
Q 012897 321 TSGG 324 (454)
Q Consensus 321 ~~~~ 324 (454)
....
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=6.1e-27 Score=207.05 Aligned_cols=239 Identities=36% Similarity=0.560 Sum_probs=218.8
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
...+.++.+|++++ ++++..|+++|.++....++.+..+.+.|+++.|+.+|+++++.++..++++|++++...+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999999 89999999999886665778888999999999999999999999999999999999988888999
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
.+.+.|+++.++.++ .++++.++..++++|.+++...+.. ......+++|.++.++.++++.++..++++|.+++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886444 44556789999999999999999999999999999988
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
+.....+.+.++++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988887888888999999999999998 99999999999999
Q ss_pred Hhc
Q 012897 278 ITA 280 (454)
Q Consensus 278 l~~ 280 (454)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 874
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=8.4e-27 Score=206.16 Aligned_cols=233 Identities=37% Similarity=0.564 Sum_probs=210.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|+++|++++..|+++|.++++.. .+....+++.|+++.|+++|++++ +.++..|+++|++++.++++.+..+.+.
T Consensus 18 ~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (252)
T 4db8_A 18 TQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDA 95 (252)
T ss_dssp HHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 45789999999999999999988763 677888999999999999999999 9999999999999999889999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PP 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~ 160 (454)
|+++.|+.+|+++++.++..++++|++++...+.....+.+.|+++.+++++ .+.+..++..++++|.+++...+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999999999999999999999999999977765548888999999999999 667899999999999999986522 22
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
.....++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 33447899999999999999999999999999998888888889999999999999999999999999999999975
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=2.9e-25 Score=197.54 Aligned_cols=236 Identities=17% Similarity=0.170 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHh
Q 012897 180 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL 258 (454)
Q Consensus 180 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 258 (454)
.+-+..|+..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567788999999987654 5566888999999999 9999999999999999999999888888889999999999999
Q ss_pred hcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 012897 259 LTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCI 338 (454)
Q Consensus 259 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 338 (454)
|+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643788999999999999998888888888999999999999999999999999999999886 55778888999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 012897 339 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD-NNEIYEKAVKILET 417 (454)
Q Consensus 339 ~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~ 417 (454)
+.|+.++.+++++++..++++|.++++......+.... ....+...+.+ .++.++.++ +.+++++|..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~--~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC--GGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc--cHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875432211000 11224555553 366777666 79999999999999
Q ss_pred hcCcCCC
Q 012897 418 YWLEEDD 424 (454)
Q Consensus 418 ~~~~~~~ 424 (454)
||..+++
T Consensus 285 ~f~~~~~ 291 (296)
T 1xqr_A 285 CFSSPAD 291 (296)
T ss_dssp HCC----
T ss_pred HcCCCCC
Confidence 9976543
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.4e-24 Score=205.60 Aligned_cols=347 Identities=15% Similarity=0.130 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC-CChHHHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFV 88 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~ 88 (454)
..++..|+..|.++.+..+.... .+ ....+.+.++|.+++ .+-+..|++.|..++. .++.+..+.+. ++++.|+
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv 382 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILL 382 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHH
Confidence 57889999999999876532221 11 125778889999877 6679999999999998 78888888765 6699999
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhCCChh--------------------------------------hHHHHHhcCChHHH
Q 012897 89 KLLAS-PSDDVREQAVWALGNVAGDSPR--------------------------------------CRDLVLSQGALIPL 129 (454)
Q Consensus 89 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~~~i~~l 129 (454)
.++++ .+..+...++.+|.|++.+.+. .+..+.+.|+++.|
T Consensus 383 ~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~L 462 (778)
T 3opb_A 383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFL 462 (778)
T ss_dssp HHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHH
Confidence 99995 7788999999999999964321 34567788999999
Q ss_pred HHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChh---HHHHHHHHHHHhccCChHHHHHHHH
Q 012897 130 LAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEE---VLTDACWALSYLSDGTNDKIQAVIE 206 (454)
Q Consensus 130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~ 206 (454)
+.++ .+.++.++..++++|.+|+.+...+......|+++.|+.++.+.... .+..|+.+|.++....+... .+.
T Consensus 463 v~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~ 539 (778)
T 3opb_A 463 KREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFK 539 (778)
T ss_dssp HHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSS
T ss_pred HHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcC
Confidence 9999 67789999999999999998866666667789999999999887554 89999999999985543322 221
Q ss_pred ----hCcHHHHHHhcCC-CCCc---------c----hhhHHHHHhHhhccCc----cchhhhhcc-CChHHHHHhhcCCc
Q 012897 207 ----AGVCPRLVELLGH-PSPS---------V----LIPALRTVGNIVTGDD----FQTQCIITY-GALPYLLGLLTHSH 263 (454)
Q Consensus 207 ----~~~i~~L~~ll~~-~~~~---------v----~~~a~~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~~L~~~~ 263 (454)
.++++.|+.+|.. +... . +..|+.+|.|++..++ ..+..+++. |+++.|..+|.++
T Consensus 540 ~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~- 618 (778)
T 3opb_A 540 KYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE- 618 (778)
T ss_dssp SSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-
T ss_pred CCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-
Confidence 3789999999983 2211 1 6689999999998763 235667775 8999999999998
Q ss_pred chhHHHHHHHHHHHHhcCCHHHH-HHHHhCC------ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc-
Q 012897 264 KKSIKKEACWTISNITAGNRDQI-QAVIDAG------LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE- 335 (454)
Q Consensus 264 ~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~------~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~- 335 (454)
+..+|+.|+++++|++.. ++.+ +.+.+.+ -++.|+.++..++.++|..|+|+|.+++.. .+..+..+.+.
T Consensus 619 n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~ 696 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKK 696 (778)
T ss_dssp SHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcc
Confidence 899999999999999974 4332 2333211 377899999999999999999999999653 44556666765
Q ss_pred CCcHHHhhccCC--CCHHHHHHHHHHHHHHHHhh
Q 012897 336 GCIKPLCDLFVC--PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 336 ~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~ 367 (454)
++++.++.+++. ++++++..++.+++|++...
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 789999999998 89999999999999999754
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.7e-23 Score=199.23 Aligned_cols=386 Identities=14% Similarity=0.123 Sum_probs=290.4
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
.....++..+.+.++. ....+.++..+.++.|.+.+++ ..++..|+-+|+++..........+. ...+.+.++
T Consensus 270 ~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~ 342 (778)
T 3opb_A 270 LQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINA 342 (778)
T ss_dssp HHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHH
Confidence 3344555555566666 3556777788889999999864 58899999999998863322111111 256777888
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC---------
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLS-QGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP--------- 160 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--------- 160 (454)
|.+++.+-+..|++.|+-++.+. ..++.+.. .+.+..|++++....+..+...++.+|.|++.+.+...
T Consensus 343 L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L 421 (778)
T 3opb_A 343 ISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX 421 (778)
T ss_dssp TTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----
T ss_pred HhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhh
Confidence 88877666999999999997554 46666555 45689999999545678899999999999998653210
Q ss_pred ------------------------------hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 012897 161 ------------------------------FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC 210 (454)
Q Consensus 161 ------------------------------~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 210 (454)
.....|++|.|+.++.++++.++..++++|.+++.. +.....+++.|++
T Consensus 422 k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal 500 (778)
T 3opb_A 422 XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAV 500 (778)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHH
T ss_pred hhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence 012278999999999999999999999999999966 5566788999999
Q ss_pred HHHHHhcCCCCCc---chhhHHHHHhHhhccCccchhhhhc----cCChHHHHHhhcC-Ccch------------hHHHH
Q 012897 211 PRLVELLGHPSPS---VLIPALRTVGNIVTGDDFQTQCIIT----YGALPYLLGLLTH-SHKK------------SIKKE 270 (454)
Q Consensus 211 ~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~l~~L~~~L~~-~~~~------------~v~~~ 270 (454)
+.|+.++.+.... .+..|+.+|++++....... ++. .+.++.|+.+|.. +... .-+.+
T Consensus 501 ~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe 578 (778)
T 3opb_A 501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE 578 (778)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence 9999999887544 79999999999985433111 111 3889999999983 2111 12779
Q ss_pred HHHHHHHHhcCC----HHHHHHHHhC-CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH-HHHHH------cCCc
Q 012897 271 ACWTISNITAGN----RDQIQAVIDA-GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI-KYLVR------EGCI 338 (454)
Q Consensus 271 a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~------~~~i 338 (454)
|+.+|.|++..+ ++.++.+++. |+++.|..++.+++..+|+.|+++++|++... +.+ ..+.. .+.+
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCSSHHHHHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhcCchhhccH
Confidence 999999999865 3446677875 89999999999999999999999999999843 322 12221 1237
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC--CCHHHHHHHHHHHH
Q 012897 339 KPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH--DNNEIYEKAVKILE 416 (454)
Q Consensus 339 ~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~ 416 (454)
+.|+.+++.++.+++..|.++|.++....+.. ...++...++++.+..++.. ++++++.++..++.
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 78999999999999999999999996543321 24455555899999998877 89999999999999
Q ss_pred HhcCc
Q 012897 417 TYWLE 421 (454)
Q Consensus 417 ~~~~~ 421 (454)
.++..
T Consensus 725 NL~~~ 729 (778)
T 3opb_A 725 GLFEV 729 (778)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99873
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=5.5e-23 Score=176.23 Aligned_cols=198 Identities=40% Similarity=0.593 Sum_probs=184.5
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
.+..+.+..++.++++.++..++++|.+++...+.....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 56788999999999999999999999999988888888899999999999999999999999999999999988887888
Q ss_pred hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 324 (454)
.+.+.|+++.|+.+|+++ ++.++..|+|+|+|++.++++....+++.|+++.|++++.++++.++..|+++|.+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998888888889999999999999999999999999999999985
Q ss_pred CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897 325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 325 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~ 364 (454)
.++....+.+.|+++.|+.++.+++++++..++++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999999999885
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=9e-23 Score=174.90 Aligned_cols=200 Identities=35% Similarity=0.514 Sum_probs=181.0
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 012897 36 IQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 36 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
...+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.+|.++++.++..++++|++++...+.
T Consensus 9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 34578999999999999 99999999999999987899999999999999999999999999999999999999988888
Q ss_pred hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 116 CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
.+..+.+.|+++.++.++ .++++.++..++++|.+++...+. .......++++.|+.++.++++.++..++++|.+++
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999 677899999999999999976532 223445789999999999999999999999999999
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
...+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9878888888999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=1.9e-21 Score=172.97 Aligned_cols=239 Identities=15% Similarity=0.119 Sum_probs=191.9
Q ss_pred HHHHHHhhcCCC-----------ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHH
Q 012897 41 VPRFVEFLMRED-----------YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGN 108 (454)
Q Consensus 41 l~~L~~lL~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~ 108 (454)
++..+..|.++. +.+-+..|+..|..++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455666666642 13568889999999998 6678888899999999999 9999999999999999999
Q ss_pred hhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCC-CChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897 109 VAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQ-PPFDQVRPALPALAQLVHSNDEEVLTDAC 187 (454)
Q Consensus 109 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~a~ 187 (454)
++.+++..+..+.+.|+++.|+.++..+++..+++.|+|+|++++.+.+. .......+++|.|+.+|++++..++..++
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999995556789999999999999987533 22334478999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhcc--CC---hHHHHHhhcCC
Q 012897 188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITY--GA---LPYLLGLLTHS 262 (454)
Q Consensus 188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~~L~~~ 262 (454)
|+|.+++...++....+++.|+++.|+.+|.++++.++..++.+|++++...+......... .+ +..-.+.++..
T Consensus 189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~ 268 (296)
T 1xqr_A 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 268 (296)
T ss_dssp HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccch
Confidence 99999998888888999999999999999999999999999999999998754332222111 11 11223334423
Q ss_pred c-chhHHHHHHHHHHHHhc
Q 012897 263 H-KKSIKKEACWTISNITA 280 (454)
Q Consensus 263 ~-~~~v~~~a~~~L~nl~~ 280 (454)
+ ..++.+.+..++.++..
T Consensus 269 e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 269 EEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 1 34566667777776664
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=161.59 Aligned_cols=197 Identities=19% Similarity=0.140 Sum_probs=170.1
Q ss_pred CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 40 VVPRFVEFLMREDYP--QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
.+|.++++|.+++ + +++..|+++|.+++..+++.+..+.+.|+||.|+.+|+++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4899999999998 6 899999999999998788999999999999999999999999999999999999998888899
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----------------CCChh
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----------------SNDEE 181 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~ 181 (454)
..+.+.|+++.|+++|....+.++++.++.+|++|+...... .....+.+|.|+.++. ..++.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999955678899999999999999875433 3334567888887652 13678
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhcCC------CCCcchhhHHHHHhHhhcc
Q 012897 182 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLGH------PSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 182 v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 238 (454)
++.++..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776776777765 678999999864 3567889999999999874
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=3.3e-19 Score=177.26 Aligned_cols=344 Identities=11% Similarity=0.113 Sum_probs=248.1
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP-RCR 117 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~ 117 (454)
.++|.+..++.+++ +.+|..++.+|+.++..... ......+++.++.+++++++.+|..+++++..++.... ..+
T Consensus 242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 35666666666666 67777777777777651111 11223568888888888889999999999998874332 111
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
........++.+..++ .+++..++..++++|..++.... .......++|.+..++.+.++.++..++.++..++...
T Consensus 318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 1112233566777777 67788999999999999875421 11223567889999999999999999999998887543
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
... .....+++.+..++.++++.+|..++.+++.++..... ......+++.+...+.++ +..+|..|+.+++.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKK 467 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 211 12236788888889999999999999999999853221 122335678899999888 89999999999999
Q ss_pred HhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHH
Q 012897 278 ITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCL 357 (454)
Q Consensus 278 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al 357 (454)
++...... .....++|.+..++.++++.+|..++++++.++.....+ .....+++.|..+++++++.++..++
T Consensus 468 l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~ 540 (588)
T 1b3u_A 468 LVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVA 540 (588)
T ss_dssp HHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHH
Confidence 98631111 112457888888888889999999999999997632221 13345899999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 358 EGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 358 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
++|..+....... + .....++.|..+.++++++++..|...+..+-
T Consensus 541 ~~l~~l~~~~~~~------------~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 541 KSLQKIGPILDNS------------T----LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHGGGSCHH------------H----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhchh------------h----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999998643221 1 11344577788889999999999999988653
No 39
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=156.42 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=161.0
Q ss_pred CcccccCCCH--HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 012897 1 MVAGVWSDDS--SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVV 78 (454)
Q Consensus 1 lv~~L~s~d~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 78 (454)
+|+.|+++|+ +++..|+++|.+++... .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.++++++..+
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3678999998 99999999999998765 567788999999999999999988 9999999999999999889999999
Q ss_pred HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---------------hhhhhHH
Q 012897 79 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---------------RAKLSML 142 (454)
Q Consensus 79 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~~~~~ 142 (454)
.+.|+|+.|+.+|. +++.++++.++.+|++|+... ..+..+.+. +++.|+.++.. ..+++++
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 99999999999998 578999999999999998654 466666664 58888876531 1256899
Q ss_pred HHHHHHHHhhcCCC-CCCChhh-hhchHHHHHHhhcC------CChhHHHHHHHHHHHhccC
Q 012897 143 RNATWTLSNFCRGK-PQPPFDQ-VRPALPALAQLVHS------NDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 143 ~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~l~~ll~~------~~~~v~~~a~~~L~~l~~~ 196 (454)
+++..+|++|+... ..+.... ..|+++.|+.+++. .+.+.+++++.+|.|++..
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999865 3333332 35788999999875 2668899999999999864
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=1.2e-18 Score=173.36 Aligned_cols=376 Identities=12% Similarity=0.108 Sum_probs=282.6
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.++++++.+|..|+.+|..++...+. ......++|.+..++++++ +.+|..|+.+|..++...+. ......
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~ 242 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEAL 242 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence 345788999999999999999876421 1234567899999999888 89999999999998863222 112234
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF- 161 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~- 161 (454)
+++.+..++.++++.+|..++.+++.++.... ........++.+..++ .++++.++..+++++..++...+....
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 78888899999999999999999999974221 1122334578888888 677889999999999999876432211
Q ss_pred -hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 162 -DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 162 -~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
.....++|.+..++.+.++.++..++++|..++...... .....+++.+..++.++++.+|..++.+++.++....
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 345778899999999999999999999999987532211 1223578889999999999999999999998886432
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 319 (454)
.. .....+++.+..++.+. ++.+|..++.++..++.. .++ .....+++.+..++.+++..+|..|+.++..
T Consensus 396 ~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 467 (588)
T 1b3u_A 396 IR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467 (588)
T ss_dssp HH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 11 12235678888888888 999999999999998752 111 1112357888888888899999999999999
Q ss_pred hcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHH
Q 012897 320 ATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL 399 (454)
Q Consensus 320 l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 399 (454)
++.....+. ....+++.|..+++++++.++..+++++..+....... ......++.+.++
T Consensus 468 l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~ 527 (588)
T 1b3u_A 468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM 527 (588)
T ss_dssp HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred HHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHhh
Confidence 987533332 22357888888889999999999999999998754321 1113456788888
Q ss_pred hcCCCHHHHHHHHHHHHHhcCc
Q 012897 400 QSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 400 ~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
.++++++|+..+.+.+..+...
T Consensus 528 l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 528 AGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp GGCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCCchHHHHHHHHHHHHHHH
Confidence 8999999999999999888753
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=4.6e-19 Score=183.70 Aligned_cols=350 Identities=14% Similarity=0.153 Sum_probs=256.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVI-- 79 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 79 (454)
++.|.++++.+|..++.++..++...... ...++++.|++.+.+++ +.++..++.+|+.++...+.....-.
T Consensus 96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~-----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 96 LNNIGDSSPLIRATVGILITTIASKGELQ-----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 45678889999999999999998874221 13467999999999988 89999999999999974333211100
Q ss_pred --hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC
Q 012897 80 --DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP 157 (454)
Q Consensus 80 --~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~ 157 (454)
-..+++.+++++.++++.+|..|++++.++....+...... -...++.+...+ .++++.++..++++|..++...+
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~ 247 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRM 247 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCH
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCH
Confidence 12356777778888999999999999998875543211000 012456666666 66788999999999999997653
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHH---hCcHHHHHHhc-----------CC----
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIE---AGVCPRLVELL-----------GH---- 219 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll-----------~~---- 219 (454)
..-.....++++.+..++.+.++.++..++.++..++..... ...+. ..+++.++..+ .+
T Consensus 248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 222234467888899999999999999999999999865421 11222 14566666666 33
Q ss_pred -------CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897 220 -------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDA 292 (454)
Q Consensus 220 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 292 (454)
.++.+|..+..+|..++...+. .++. .+++.+...+.++ ++.+|..|++++++++.+..+.....+ .
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~ 399 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-P 399 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-H
T ss_pred cccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-H
Confidence 3456799999999999875432 1222 4678888888888 999999999999999987766544333 4
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHH-HHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-QIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
++++.++..+.++++.||..++|++++++...... ...+ -..+++.|+..+.++++.++..++++|.++++....
T Consensus 400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 57899999999999999999999999997631110 0011 124678888889889999999999999999976554
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=2.3e-18 Score=178.38 Aligned_cols=388 Identities=14% Similarity=0.133 Sum_probs=273.5
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCh
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAV 84 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 84 (454)
+.+.++.+|..|+..|++.+... -.....-....+-+.+++.|.+++ +.+|..++.+++.++...... .-.+.+
T Consensus 57 ~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll 130 (852)
T 4fdd_A 57 LKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLL 130 (852)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHH
Confidence 35778999999999999987642 111111123345566778888888 899999999999998732110 113678
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
+.|+..+.++++.+++.++.+|+.++...+.....-. -...++.+++.+ .+++..++..|++++..+....+...
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~ 209 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQAL 209 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 9999999999999999999999999854332211000 011345555555 56788999999999998876533211
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
......+++.+..++.++++.++..++++|..++...+......+. ++++.++..+.+.++.+|..|+.++..++....
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 2233578889999999999999999999999999876655443333 578888888899999999999999999986432
Q ss_pred cchhhhhc---cCChHHHHHhhc-----------C--C--------cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChH
Q 012897 241 FQTQCIIT---YGALPYLLGLLT-----------H--S--------HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVG 296 (454)
Q Consensus 241 ~~~~~~~~---~~~l~~L~~~L~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 296 (454)
.. ..+. ..+++.++..+. + . ....+|..|+.++..++...++ .++ ..+++
T Consensus 289 -~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~ 362 (852)
T 4fdd_A 289 -CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILP 362 (852)
T ss_dssp -HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHH
T ss_pred -HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHH
Confidence 11 1122 134566666662 2 0 1345799999999998863222 112 23577
Q ss_pred HHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCC
Q 012897 297 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTA 376 (454)
Q Consensus 297 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 376 (454)
.+.+.+.++++.+|..|++++++++.........+ -.++++.+...++++++.|+..+++++.++.........
T Consensus 363 ~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---- 436 (852)
T 4fdd_A 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP---- 436 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH----
Confidence 78888888899999999999999998754322222 235789999999999999999999999999875433110
Q ss_pred cccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Q 012897 377 TADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 377 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
..+. .+.++.|.+.+.++++.++..|.+.+..+.+.
T Consensus 437 ----~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 437 ----DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp ----TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 0011 23456667777788999999999998887643
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=2.3e-17 Score=163.07 Aligned_cols=328 Identities=18% Similarity=0.167 Sum_probs=231.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
.+.|+++|+.+|..|+++|.++... +... .+++.+.+++.+++ +.+|..|+.++.++...+++... +.
T Consensus 92 ~kdL~~~n~~ir~~AL~~L~~i~~~---~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~---~~ 159 (591)
T 2vgl_B 92 VKDCEDPNPLIRALAVRTMGCIRVD---KITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE---DQ 159 (591)
T ss_dssp GGGSSSSSHHHHHHHHHHHHTCCSG---GGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH---HH
T ss_pred HHHcCCCCHHHHHHHHHHHHcCChH---HHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc---cc
Confidence 3557888888888888888776422 2222 24677999999988 99999999999999886665432 24
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
++++.+..+|.++++.++..|+.+|..++...+.........+.+..++..+ .+.++..+...+.++..++.. ..
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~----~~ 234 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK----DD 234 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC----SH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC----Ch
Confidence 6789999999999999999999999999976653210000011255666666 456777888888888777633 22
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 238 (454)
.....+++.+..++++.++.|+..|++++..+... +++....+. ..+.+.|+.++ ++++.+|..++.+|+.++..
T Consensus 235 ~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 33467888888999999999999999999998742 233333333 35566777665 47889999999999999876
Q ss_pred CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897 239 DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318 (454)
Q Consensus 239 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 318 (454)
.+..... .+..+. .+.++ +..+|..+++++.+++... ++. .+++.|...+.+.+.+++..++++|+
T Consensus 313 ~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~v~aI~ 378 (591)
T 2vgl_B 313 RPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKAVRAIG 378 (591)
T ss_dssp CCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5533221 112121 22244 5789999999999887542 222 24566777787788899999999999
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 319 NATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 319 ~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
+++....+. . ..+++.|++++......++..++.++..+++..+
T Consensus 379 ~la~~~~~~-~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 379 RCAIKVEQS-A-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp HHHTTCHHH-H-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhChhH-H-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 998864322 1 2257888888888888888888888888876543
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=2.2e-16 Score=156.11 Aligned_cols=326 Identities=15% Similarity=0.112 Sum_probs=237.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.++++|+.++..+..++..++... ++.. .-+++.+.+-|++++ +.+|..|+.+|+++.. ++....
T Consensus 55 i~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~-----~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~---- 121 (591)
T 2vgl_B 55 VNCMQTDNLELKKLVYLYLMNYAKSQ-PDMA-----IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY---- 121 (591)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHS-HHHH-----HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHcccC-chHH-----HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH----
Confidence 45678888888888888888776542 1111 225678888889888 9999999999998863 444433
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC-C
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP-P 160 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~ 160 (454)
+++.+.+++.++++.+|..|+.++.+++...+... ...+.++.+..++ .++++.++..|+++|..++...+.. .
T Consensus 122 -l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 122 -LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp -HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred -HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 36789999999999999999999999986555422 1234577888888 6889999999999999999876433 2
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc--
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG-- 238 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 238 (454)
.......++.++..+.+.++..+...+.++..++...+... ..+++.+..++++.++.++..|++++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 33345667788888888899999999999998886544332 25677888899999999999999999998752
Q ss_pred -CccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897 239 -DDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317 (454)
Q Consensus 239 -~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 317 (454)
++...+.+. ..+.+.|+.++ ++ ++.+|..|+.++..+....++... . .+..+. .+.+++..+|..+++.+
T Consensus 272 ~~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~----~-~~~~~~-~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 272 KDSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILK----Q-EIKVFF-VKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp BTTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTT----T-CTTTTS-CCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHH----H-HHHhhe-eccCChHHHHHHHHHHH
Confidence 233333222 24556677665 46 889999999999999864333211 1 112121 12234588999999999
Q ss_pred HHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 318 SNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 318 ~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
.+++...+.+ . +++.|..++.+.+++++..+++++..+....
T Consensus 343 ~~l~~~~nv~---~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 343 IRLASQANIA---Q-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHTCCSSTHH---H-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHCChhhHH---H-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 9998754422 2 4666778888889999999999998887643
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1.8e-14 Score=137.13 Aligned_cols=402 Identities=14% Similarity=0.153 Sum_probs=282.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 012897 8 DDSSLQLEATTQFRKLLSIERSP----------------PIEEVI-QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG 70 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 70 (454)
+|.++...++..|.++++....+ ..+.++ +.+.++.|+.+|++.+ -.+|..++++|..++..
T Consensus 74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhc
Confidence 68899999999999888754221 112232 4577999999999988 89999999999999986
Q ss_pred Cch-hhHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh---hhhHHHHH
Q 012897 71 TSE-NTKVVIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA---KLSMLRNA 145 (454)
Q Consensus 71 ~~~-~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a 145 (454)
.++ ..+.+... ++++.|+.+|+++.+.+|..++..|.+++.+++..++.+.-.|+++.|+.++..+. ...+...+
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC 232 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC 232 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHH
Confidence 666 77777754 99999999999999999999999999999999999999998999999999995432 23688899
Q ss_pred HHHHHhhcCCCC-CCChhhhhchHHHHHHhhcCCChh------HHHH---HHHHHHHhccC------ChHHHHHHHHhCc
Q 012897 146 TWTLSNFCRGKP-QPPFDQVRPALPALAQLVHSNDEE------VLTD---ACWALSYLSDG------TNDKIQAVIEAGV 209 (454)
Q Consensus 146 ~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~------v~~~---a~~~L~~l~~~------~~~~~~~~~~~~~ 209 (454)
+.++.+|.++++ +.......+++|.|..++..+.+. ...+ ++.++.-++.. ...+...+.+.|+
T Consensus 233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 999999999863 344445578999999998754321 3333 45555555543 2245567888999
Q ss_pred HHHHHHhcCCC--CCcchhhHHHHHhHhhccCccchhhhhccC---------ChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 210 CPRLVELLGHP--SPSVLIPALRTVGNIVTGDDFQTQCIITYG---------ALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 210 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
++.++.++..+ ...++..|+.+++.++++++.....+.+.. ++..|+.++.+.....+|..|+.++..+
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 99999998765 467889999999999998886555544321 3444555566654678999999999999
Q ss_pred hcCCHHHHHHHHhC----------CCh---HHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH--------c--
Q 012897 279 TAGNRDQIQAVIDA----------GLV---GPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------E-- 335 (454)
Q Consensus 279 ~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~-- 335 (454)
..++++....++.. +.+ ..+..-+-+.|+--...|+.++.++.... ++....+.+ +
T Consensus 393 ~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n-~~~K~~~l~v~l~~~~ge~~ 471 (651)
T 3grl_A 393 LYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQEN-ATQKEQLLRVQLATSIGNPP 471 (651)
T ss_dssp HTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCC
T ss_pred HhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCC-HHHHHHHHhCcccccCCCCc
Confidence 99887665555532 111 12334444456655566888888888753 333333222 1
Q ss_pred -CCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cC-C--CHHHHH
Q 012897 336 -GCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SH-D--NNEIYE 409 (454)
Q Consensus 336 -~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~-~--~~~v~~ 409 (454)
..++.+...+. ..++.++...+..|...+..+... ....+.+...++.|.... ++ . +.-|+-
T Consensus 472 vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A------------V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqG 539 (651)
T 3grl_A 472 VSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA------------VTHFLHNSANVPFLTGQIAENLGEEEQLVQG 539 (651)
T ss_dssp CBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH------------HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH------------HHHHHcCCchHHHHHHHHHhccCcchHHHHH
Confidence 11444455554 345677766677776666554432 455666666677777554 32 2 234677
Q ss_pred HHHHHHHHhcCcCC
Q 012897 410 KAVKILETYWLEED 423 (454)
Q Consensus 410 ~a~~~l~~~~~~~~ 423 (454)
.+.-++.-++....
T Consensus 540 L~a~LLGi~yef~~ 553 (651)
T 3grl_A 540 LCALLLGISIYFND 553 (651)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhccC
Confidence 88888777666444
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.71 E-value=8.8e-16 Score=137.42 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=201.8
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 012897 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP 114 (454)
Q Consensus 35 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 114 (454)
....+.++.|+..|.+++ +.+|..|+++|+++.. .+.++.|+.++.++++.+|..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999988 9999999999999873 2357889999999999999999999999864322
Q ss_pred hhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 115 RCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 115 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
... . .++.+...+..++++.++..++++|..+....+ ......++.+..++.++++.++..++++|+++.
T Consensus 87 ~~~-~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CED-N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THH-H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cch-H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 211 1 123333333367789999999999999974321 123467899999999999999999999999875
Q ss_pred cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHH
Q 012897 195 DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWT 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~ 274 (454)
. .+.++.|+.++.++++.+|..++++|+.+....+ ..++.|...+.++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2578999999999999999999999999853222 4567899999988 99999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHH
Q 012897 275 ISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIV 353 (454)
Q Consensus 275 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~ 353 (454)
|+++.. ...++.|+..+.++ +++..++++|+.+.. + .+++.|..++.. .+++++
T Consensus 216 L~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhCC-----------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 998862 34788888888764 499999999999854 1 357788888864 567777
Q ss_pred HHHHHHHH
Q 012897 354 TVCLEGLE 361 (454)
Q Consensus 354 ~~al~~L~ 361 (454)
..++..|.
T Consensus 271 ~~~~~~l~ 278 (280)
T 1oyz_A 271 TSAIDKLK 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77776664
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=1.2e-14 Score=138.37 Aligned_cols=353 Identities=15% Similarity=0.136 Sum_probs=258.1
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCch--------------
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE-DYPQLQFEAAWALTNIASGTSE-------------- 73 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~-------------- 73 (454)
-.+=|..|+..|+.++... + ..+..++++.|+..|+.. ++.++...++.+|.++....++
T Consensus 35 l~eDRR~Av~~Lk~~sk~y--~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~ 109 (651)
T 3grl_A 35 LLDDRRNAVRALKSLSKKY--R---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDL 109 (651)
T ss_dssp SHHHHHHHHHHHHHTTTTT--T---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CH
T ss_pred chhHHHHHHHHHHHHHHHh--H---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHH
Confidence 3567889999999987553 1 134456799999999875 3478889999999887663322
Q ss_pred ---hhHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHHhchhhhhhHHHHHHH
Q 012897 74 ---NTKVV-IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR-CRDLVLSQ-GALIPLLAQLNERAKLSMLRNATW 147 (454)
Q Consensus 74 ---~~~~~-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~ 147 (454)
..+.+ -+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+| .+..+.+|..++.
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~rE~iRneall 188 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCchHHHHHHHHH
Confidence 12233 3468899999999999999999999999999987776 67777754 8899999999 7778899999999
Q ss_pred HHHhhcCCCCCC-ChhhhhchHHHHHHhhcCCCh----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897 148 TLSNFCRGKPQP-PFDQVRPALPALAQLVHSNDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222 (454)
Q Consensus 148 ~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 222 (454)
.|..|+.+.+.. +.....++++.|+.+++.... .+...++.++.++.+.++.+...+.+.+.++.|..++..++.
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 999999987443 344557999999999987544 789999999999999998888889999999999999975432
Q ss_pred c------chhh---HHHHHhHhhccCc------cchhhhhccCChHHHHHhhcCCc-chhHHHHHHHHHHHHhcCCHHHH
Q 012897 223 S------VLIP---ALRTVGNIVTGDD------FQTQCIITYGALPYLLGLLTHSH-KKSIKKEACWTISNITAGNRDQI 286 (454)
Q Consensus 223 ~------v~~~---a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~~L~~~~-~~~v~~~a~~~L~nl~~~~~~~~ 286 (454)
. ...+ ++.++..++.... .....+.+.|++..+++++..+. ...++..|..+++.+.++++...
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q 348 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ 348 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 1122 5666666665422 23456778899999999987542 45799999999999999998887
Q ss_pred HHHHhCC---------ChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH--------------HHh
Q 012897 287 QAVIDAG---------LVGPLVNLLQNA-EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK--------------PLC 342 (454)
Q Consensus 287 ~~l~~~~---------~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~--------------~L~ 342 (454)
..+.+.. ++..|+.++.+. ..++|..|+.++..+...... ....+... .++ .|.
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~-~Q~~i~~~-llp~~~~~~~~~~s~g~ll~ 426 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK-GQGEIVST-LLPSTIDATGNTVSAGQLLC 426 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHT-TSSCCCCCTTSSSCHHHHHH
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH-HHHHHHHh-cCCcccccCCCCCCcchhhh
Confidence 7776533 233344445443 678999999999999887432 22233321 111 133
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 343 DLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 343 ~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
..+-+.|+.-.-.+.-+|.+++.....
T Consensus 427 ~~l~s~d~~~~wfAavil~hll~~n~~ 453 (651)
T 3grl_A 427 GGLFSTDSLSNWCAAVALAHALQENAT 453 (651)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhccCchHHHHHHHHHHHHHHcCCHH
Confidence 333345664444466667777765543
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=3.3e-15 Score=133.63 Aligned_cols=248 Identities=15% Similarity=0.106 Sum_probs=192.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.|.++|+.+|..|+++|.++.. .+.++.|+.++.+++ +.+|..|+++|+.+.... ....
T Consensus 29 ~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~-~~~~----- 89 (280)
T 1oyz_A 29 FRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCED----- 89 (280)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccch-----
Confidence 467889999999999999998752 135888999999998 999999999999987522 2111
Q ss_pred CChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 82 GAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 82 g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.+++.|.. ++.++++.+|..++++|+++....+..... .++.++..+ .++++.++..++++|..+...
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHH-----HHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH-----
Confidence 12344442 457789999999999999997433322222 367788888 778899999999999987642
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
..++.|..++.++++.++..++++|+.+....+ ..++.+..++.++++.+|..|+++|+.+..
T Consensus 159 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 159 -----ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 478999999999999999999999999854332 346788889999999999999999998862
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHH
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAIS 318 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~ 318 (454)
...++.|...+.++ + +|..++++|+.+.. ...++.|..++.+ .++++...+..++.
T Consensus 222 --------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp --------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred --------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 25678899999876 4 89999999998853 2468889998876 47778877777764
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=6.2e-15 Score=153.25 Aligned_cols=344 Identities=14% Similarity=0.210 Sum_probs=238.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhhHHHHhCCChHH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPI 86 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~ 86 (454)
+++.++..|..+|..++...+.... ..+++.+.+.+.+++ +.+|..|+++++.++.+.. +.....+. .+++.
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~ 415 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPS 415 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHH
Confidence 3468899999999888765321111 135677778888888 8999999999999997532 33333332 47889
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCC----CC
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGDSPRC---RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKP----QP 159 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~ 159 (454)
++..+.++++.+|..++++++.++...... ... -...++.++..+ .+. +.++..+++++.+++.... ..
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 999999999999999999999998432110 000 112366777777 333 7899999999999986532 11
Q ss_pred ChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC---------------CCC
Q 012897 160 PFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH---------------PSP 222 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~~ 222 (454)
-......+++.+...+.+.+ +.++..++.++..++...+......+. .+++.++..+.. ...
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 22344677888889888544 789999999999998655443333333 355556555532 134
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcch-hHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHH
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK-SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNL 301 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 301 (454)
.++..++.+|+.++........... ..+++.++..+.+. +. .++..++++++.++..........+ ..+++.+...
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~ 647 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHH
Confidence 5677899999999876543322222 25677888888877 56 8999999999998863222222333 2478889999
Q ss_pred hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC--HHHHHHHHHHHHHHHHhhh
Q 012897 302 LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD--PRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~--~~v~~~al~~L~~l~~~~~ 368 (454)
++.+++.++..++.++..++.........++ ..+++.+...+.+++ ++++..++.++..++....
T Consensus 648 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 648 LNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred hccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 9878889999999999998775443333332 236777778887654 8899999999999988654
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=3.4e-15 Score=148.11 Aligned_cols=355 Identities=15% Similarity=0.102 Sum_probs=251.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
+.|+++|+.+|..|+++|.++... .+. ..+++.+.+++.+++ +.+|..|+.++.++....++... +
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~-----~ 179 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME-----M 179 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-----G
T ss_pred HhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-----H
Confidence 456788888998899888888632 122 346888999999998 99999999999999986665432 6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch--------------hhhhhHHHHHHHH
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE--------------RAKLSMLRNATWT 148 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~~~~a~~~ 148 (454)
+++.+..++.+.++.++..|+.+|..++..++.....+ ...++.++.+|.+ ..++-.+..++.+
T Consensus 180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~ 257 (618)
T 1w63_A 180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL 257 (618)
T ss_dssp GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence 78888899999999999999999999987665432222 2467888877743 2467888889999
Q ss_pred HHhhcCCCCCCChhhhhchHHHHHHhhc------CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCC
Q 012897 149 LSNFCRGKPQPPFDQVRPALPALAQLVH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSP 222 (454)
Q Consensus 149 L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 222 (454)
|..++...+ .....+.+.|..++. +.+..+...+++++..+... +. +.. .++..|..++.++++
T Consensus 258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~L~~~d~ 327 (618)
T 1w63_A 258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRFLLNNDK 327 (618)
T ss_dssp HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHHHTCSST
T ss_pred HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHHHhCCCC
Confidence 999986532 122344555555543 23567899999999887542 21 111 356778888999999
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL 302 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 302 (454)
.+|..|+.+|+.++...+.. +. .....++.++.++ +..+|..|..++..++.... ... +++.|...+
T Consensus 328 ~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l 394 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFL 394 (618)
T ss_dssp TTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHH
Confidence 99999999999999754422 22 3567888999988 99999999999999987422 112 356788888
Q ss_pred hhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccH
Q 012897 303 QNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ 382 (454)
Q Consensus 303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 382 (454)
.+.+.+++..+..+|+.++....+.... +++.|+++++.....+...++..+..++...+..+
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~----------- 457 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH----------- 457 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH-----------
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH-----------
Confidence 8889999999999999998853222211 36777777776666666666777777776543321
Q ss_pred HHHHHHHhccHHHHHHHhc--CCCHHHHHHHHHHHHHhcC
Q 012897 383 YAQLVEEAEGLEKIENLQS--HDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 383 ~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~ 420 (454)
... +..|..+.. ...+.+...+.|++.+|-+
T Consensus 458 -~~~------v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 458 -AYT------VQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp -HHH------HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred -HHH------HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 111 222322222 1334455678999998864
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=9.5e-15 Score=152.13 Aligned_cols=269 Identities=19% Similarity=0.197 Sum_probs=190.4
Q ss_pred ccccCC--CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 3 AGVWSD--DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 3 ~~L~s~--d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+.++++ ++.+|..|++++..++...............+++.+...+.+.+ ++++..++++|..++...+......+.
T Consensus 179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~ 257 (876)
T 1qgr_A 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMG 257 (876)
T ss_dssp HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHT
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555 68999999999999876421100001111235777888887777 899999999999999755555444455
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---------------------hHHHHHhcCChHHHHHHhch----
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR---------------------CRDLVLSQGALIPLLAQLNE---- 135 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---------------------~~~~~~~~~~i~~l~~~l~~---- 135 (454)
..+++.++..+.+.++.++..++.++..++..... ...... ...++.+++.+..
T Consensus 258 ~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d 336 (876)
T 1qgr_A 258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDEN 336 (876)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhccccc
Confidence 57889999988888999999999999888743110 000000 1235556666632
Q ss_pred --hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHH
Q 012897 136 --RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPR 212 (454)
Q Consensus 136 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~ 212 (454)
+.+..++..+..++..++...+ ......+++.+...+.+.++.++..++++++.++.... ....... ..+++.
T Consensus 337 ~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~ 412 (876)
T 1qgr_A 337 DDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPT 412 (876)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence 2345788899999988876532 12345678888888889999999999999999997654 3333333 368899
Q ss_pred HHHhcCCCCCcchhhHHHHHhHhhccCccch--hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
++..+.++++.+|..|++++++++...+... ... -..+++.++..+.++ +.++..+++++.+++.
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997644321 111 125667778887653 7799999999999885
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=2.7e-15 Score=156.00 Aligned_cols=396 Identities=12% Similarity=0.125 Sum_probs=262.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT-KVVIDH 81 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~ 81 (454)
+.+++.++.+|..|+.++..++.+.........+ ..+++.++..+.+++ +.+|..++++++.++....... ..-.-.
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 3467889999999999999998663112222222 247888999999988 9999999999999986211100 000112
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----hhhHHHHHhcCChHHHHHHhch-hhhhhHHHHHHHHHHhhcCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDS-----PRCRDLVLSQGALIPLLAQLNE-RAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~ 155 (454)
.+++.++..+.++ +.++..+++++.+++... ......+ ..+++.++..+.. +.+..++..++.++..++..
T Consensus 454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 4578888888776 899999999999987421 1111111 1235667777742 33478999999999999877
Q ss_pred CCCCChhhhhchHHHHHHhhcCC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC
Q 012897 156 KPQPPFDQVRPALPALAQLVHSN---------------DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP 220 (454)
Q Consensus 156 ~~~~~~~~~~~~l~~l~~ll~~~---------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 220 (454)
.+.........++|.++..+... ...++..++.+|.+++............ .+++.++..+.+.
T Consensus 531 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK 609 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC
Confidence 54433344566777777766531 3457788999999888654432222222 5677778888777
Q ss_pred CC-cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHH
Q 012897 221 SP-SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLV 299 (454)
Q Consensus 221 ~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 299 (454)
+. .++..++.+++.++..........+. .+++.+...+.++ ++.+|..++.+++.++........... ..+++.++
T Consensus 610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~ 686 (861)
T 2bpt_A 610 DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLA 686 (861)
T ss_dssp TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHH
Confidence 66 89999999999998654433222222 4788888888777 888999999999999864333333333 35677888
Q ss_pred HHhhhcc--hhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCC-----------HHHHHHHHHHHHHHHHh
Q 012897 300 NLLQNAE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPD-----------PRIVTVCLEGLENILKV 366 (454)
Q Consensus 300 ~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~-----------~~v~~~al~~L~~l~~~ 366 (454)
+.+.+.+ +++|..++.+++.++.........++- .+++.+...++... ..++..++.++..++..
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887754 889999999999998754434444432 35777777776431 35788888998888865
Q ss_pred hhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 012897 367 GEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD----NNEIYEKAVKILETYWL 420 (454)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~ 420 (454)
...... . +...+. ..++.+.....+. +..++..|..++..+..
T Consensus 765 l~~~~~------~---~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 765 LHDKPE------A---LFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp TTTCHH------H---HGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HccCHH------H---HHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 331000 0 111111 1234454554442 78999999998888754
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.63 E-value=2.8e-15 Score=144.28 Aligned_cols=386 Identities=13% Similarity=0.075 Sum_probs=263.3
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHH----
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-YPQLQFEAAWALTNIASGTSENTKV---- 77 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~---- 77 (454)
..+.+.|+++|..|-..|.++.... ..+.+..|..++.+++ ++.+|..|+..|.++..........
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3456889999999999998865421 1234667777777652 4899999999999987633111100
Q ss_pred -------HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhh--hhhHHHHHHHH
Q 012897 78 -------VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERA--KLSMLRNATWT 148 (454)
Q Consensus 78 -------~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~ 148 (454)
-....+-..++..+.++++.+ ..++.+++.++....... .-.+.++.++..+ .+. ++.++..++.+
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 011123456777888877778 888899998874321100 0124577888888 445 78899999999
Q ss_pred HHhhcCCC-CCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhcCCCCCcc
Q 012897 149 LSNFCRGK-PQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLGHPSPSV 224 (454)
Q Consensus 149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v 224 (454)
|..++... +.........+++.+..++.+. ++.++..++.++.++......... .....-+++.+...+.++++.+
T Consensus 154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 99998753 2222334466888899999887 789999999999987643221111 0111124666667778888999
Q ss_pred hhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHH--------------------
Q 012897 225 LIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRD-------------------- 284 (454)
Q Consensus 225 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~-------------------- 284 (454)
+..++.++..++...+......+...+++.++..+++. ++.++..++..+..++.....
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999976554333233326777888888888 899999999999888753110
Q ss_pred -HHHHHHhCCChHHHHHHhhh-------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHH
Q 012897 285 -QIQAVIDAGLVGPLVNLLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVC 356 (454)
Q Consensus 285 -~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~a 356 (454)
..+..+ ..++|.++..+.. +++.+|..|..+|..++......... .+++.+...+.++++.++..+
T Consensus 313 ~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 313 FYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp CHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHH
Confidence 011111 2356666666643 24678999999999987754422222 357788888999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897 357 LEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 357 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
+.+|..+........ +...+ ...++.+...+.++++.|+..|.+.+.++...-
T Consensus 387 l~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999986432110 11111 446778888889999999999999999987643
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.61 E-value=1.8e-14 Score=155.05 Aligned_cols=402 Identities=12% Similarity=0.122 Sum_probs=265.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++ ..+ .
T Consensus 12 L~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~~~--~ 85 (1230)
T 1u6g_C 12 LEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--YQV--E 85 (1230)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--HHH--H
T ss_pred HHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--HHH--H
Confidence 4567899999999999999988755311 1111112246788999999887 99999999999999874433 111 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH-----HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR-----DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
.+++.++..+.++++.+|..++.+|+.++....... ..-.....++.++..+.++++..++..++.++..++...
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 357888888888889999999999999874322210 001112357888888843567899999999999998643
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHh
Q 012897 157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNI 235 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l 235 (454)
+..-......+++.+...+.++++.++..++.++..++...+.. ++ ..+++.++..+.+. ++.++..++.+++.+
T Consensus 166 ~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 166 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 22222345778888999999999999999999999998765432 22 25677777777544 357889999999999
Q ss_pred hccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh------------
Q 012897 236 VTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ------------ 303 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------------ 303 (454)
+...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+ ..+++.++..+.
T Consensus 242 ~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 242 SRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----------
T ss_pred HHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCccccc
Confidence 876543222222 36889999999887 889999999999988864322111111 112333332221
Q ss_pred -------------------------hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHH
Q 012897 304 -------------------------NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLE 358 (454)
Q Consensus 304 -------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~ 358 (454)
+..+.+|..|+.++..++.........+ -..+++.+...+.+.++.++..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~a~~ 396 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVKADVFH 396 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHHHHHHH
Confidence 1124679999999999987543212222 2457888999998899999999999
Q ss_pred HHHHHHHhhhhhhhccC--Ccc-----cccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 359 GLENILKVGEAEKNMGT--ATA-----DVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 359 ~L~~l~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
++..+++.......... ..| ........+ ...++.+.+..+++++.++..+...+..+..
T Consensus 397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp HHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 99988874321000000 000 000011111 2234555666788888888888887776654
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=3.1e-14 Score=148.25 Aligned_cols=401 Identities=14% Similarity=0.154 Sum_probs=257.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh--HHHHh
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENT--KVVID 80 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~ 80 (454)
+.+++.++.+|..|++++..++....+...... -..+++.++..+++++ +.+|..|+++|++++...+... ... -
T Consensus 373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~-l 449 (876)
T 1qgr_A 373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVY-L 449 (876)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSSTTT-H
T ss_pred HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcccHHH-H
Confidence 456788999999999999999876421222222 2457899999999988 9999999999999997433210 011 1
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------hhHHHHHhcCChHHHHHHhchh--hhhhHHH
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAQLNER--AKLSMLR 143 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~ 143 (454)
..+++.++..+.++ +.++..+++++.+++.... .....+ ..+++.++..+... .+..++.
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHH
Confidence 24577888888775 8999999999999874211 011111 12456666666432 1356888
Q ss_pred HHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC----------C-C----hhHHHHHHHHHHHhccCCh-HHHHHHHHh
Q 012897 144 NATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS----------N-D----EEVLTDACWALSYLSDGTN-DKIQAVIEA 207 (454)
Q Consensus 144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----------~-~----~~v~~~a~~~L~~l~~~~~-~~~~~~~~~ 207 (454)
.+..++..++...+.........+++.++..+.. . + ++++..++.++..++.... ....... .
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~ 605 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-D 605 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-H
T ss_pred HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-H
Confidence 8889999888776544444556677777766542 2 2 4567888999999887655 3333333 3
Q ss_pred CcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 208 GVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 208 ~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
.+++.++.++.+.. +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++......
T Consensus 606 ~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 684 (876)
T 1qgr_A 606 VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN 684 (876)
T ss_dssp HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888887764 478999999999998753332222222 467788888876536789999999999998632222
Q ss_pred HHHHHhCCChHHHHHHhhh--cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC----CH-------HH
Q 012897 286 IQAVIDAGLVGPLVNLLQN--AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP----DP-------RI 352 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~----~~-------~v 352 (454)
....+ ..+++.++..+.+ .+.+++..+++++++++.....+...++ ..+++.|...++.+ ++ .+
T Consensus 685 ~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~ 761 (876)
T 1qgr_A 685 IIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNEL 761 (876)
T ss_dssp GHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHH
T ss_pred hhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHH
Confidence 33333 3578888888876 3678999999999999763322322222 12456666666543 22 67
Q ss_pred HHHHHHHHHHHHHhhhhhhh--ccCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 012897 353 VTVCLEGLENILKVGEAEKN--MGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEKAVKILETYWL 420 (454)
Q Consensus 353 ~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~ 420 (454)
+..++.++..++........ ..+.. ....|...+ +..+..+..++ ++.++..|..++..+..
T Consensus 762 r~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 762 RESCLEAYTGIVQGLKGDQENVHPDVM-LVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSCCGGGG-GSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcccccchHH-HHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 88888888888775432100 00000 111122222 24445554555 78999999888877654
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.59 E-value=4.8e-15 Score=142.66 Aligned_cols=350 Identities=14% Similarity=0.116 Sum_probs=237.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhH
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPP----------IEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SENTK 76 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 76 (454)
.++.+|..|+..|+++........ ...-....+-..++..|.+++ +.+ ..++.+++.++... +..
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~~-- 124 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPVN-- 124 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGGT--
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhcccc--
Confidence 378999999999999986521000 000112234456778888887 788 88999999998732 110
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHHhchhh-hhhHHHHHHHHHHhh
Q 012897 77 VVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-PRCRDLVLSQGALIPLLAQLNERA-KLSMLRNATWTLSNF 152 (454)
Q Consensus 77 ~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~l 152 (454)
.-.++++.|+..+.++ ++.++..++.+|..++... +..-.... ...++.++..+.... +..++..++.++.++
T Consensus 125 --~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (462)
T 1ibr_B 125 --QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (462)
T ss_dssp --CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 1146889999999888 8999999999999998532 21101000 124667777774432 789999999999997
Q ss_pred cCCCC--CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHH
Q 012897 153 CRGKP--QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALR 230 (454)
Q Consensus 153 ~~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 230 (454)
..... .........+++.+...+.+.++.++..++.++..++...+......+..++++.++..+.+.++.++..++.
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~ 281 (462)
T 1ibr_B 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (462)
T ss_dssp TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 64321 0011111235777777888889999999999999998655433222222256777777788888999999999
Q ss_pred HHhHhhccCc-----------------cchhhhhc---cCChHHHHHhhcCC------cchhHHHHHHHHHHHHhcCCHH
Q 012897 231 TVGNIVTGDD-----------------FQTQCIIT---YGALPYLLGLLTHS------HKKSIKKEACWTISNITAGNRD 284 (454)
Q Consensus 231 ~L~~l~~~~~-----------------~~~~~~~~---~~~l~~L~~~L~~~------~~~~v~~~a~~~L~nl~~~~~~ 284 (454)
.+..++.... .....+.+ ..+++.++..+... .++.+|..|+.+|..++...++
T Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 9998876420 00000111 23556666666432 1457999999999999873322
Q ss_pred HHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHH
Q 012897 285 QIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENIL 364 (454)
Q Consensus 285 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~ 364 (454)
.++ ..+++.+...+.+.++.+|..|+.+++.++....++.... .-..+++.++..+.++++.|+..++++|.++.
T Consensus 362 ---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 362 ---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp ---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 122 2467777888888899999999999999998644221111 11457889999999999999999999999999
Q ss_pred Hhhhh
Q 012897 365 KVGEA 369 (454)
Q Consensus 365 ~~~~~ 369 (454)
.....
T Consensus 437 ~~~~~ 441 (462)
T 1ibr_B 437 ELLPE 441 (462)
T ss_dssp HHGGG
T ss_pred Hhccc
Confidence 86543
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.58 E-value=3.5e-14 Score=152.89 Aligned_cols=393 Identities=12% Similarity=0.115 Sum_probs=259.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCchhhH
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPP----IEEVIQSGVVPRFVEFLMR-EDYPQLQFEAAWALTNIASGTSENTK 76 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 76 (454)
+..|.++++.+|..|+.+|..++....... ...-....++|.|...+.+ ++ +.++..|+.+|..++........
T Consensus 92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~ 170 (1230)
T 1u6g_C 92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLV 170 (1230)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHH
Confidence 345677888889999999988886642220 1112234578999999984 66 89999999999999852221111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC
Q 012897 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK 156 (454)
Q Consensus 77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~ 156 (454)
.. -..+++.++..+.++++.+|..++.+++.++...+. .. -...++.++..+....+..++..++.++..++...
T Consensus 171 ~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 171 NF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp TT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 11 124567788888888999999999999999865432 11 12347778887754444567777888888887654
Q ss_pred CCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-----------------
Q 012897 157 PQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH----------------- 219 (454)
Q Consensus 157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------------- 219 (454)
+..-......++|.+...+.+.++.++..++.++..++...+......+. .+++.++..+..
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccccccccc
Confidence 32222345788999999999999999999999999888654432222222 345555554431
Q ss_pred --------------------CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHh
Q 012897 220 --------------------PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNIT 279 (454)
Q Consensus 220 --------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~ 279 (454)
..+.+|..|+.++..++...+......+ ..+++.+...+.+. +..+|..++.++..++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLL 402 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence 1235688899999998874443223333 36678888888777 8899999999888776
Q ss_pred cC--C-----------------HHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 012897 280 AG--N-----------------RDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP 340 (454)
Q Consensus 280 ~~--~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 340 (454)
.. . ......++ ..+++.+.+.+.++++.+|..++.+++.++.........++ ..+++.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~ 479 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPG 479 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHH
Confidence 41 1 11122222 34667777778888999999999999988764321111111 235778
Q ss_pred HhhccCCCCH--HHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 341 LCDLFVCPDP--RIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 341 L~~~l~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
+...+.++.+ .++..++..+..++...... .+...+ ...++.+.....+++..++..|...+..+
T Consensus 480 l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~-----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 480 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ-----------VFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG-----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH-----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8888887764 88888999998887632211 122222 24566666667777787777776666655
Q ss_pred c
Q 012897 419 W 419 (454)
Q Consensus 419 ~ 419 (454)
.
T Consensus 547 ~ 547 (1230)
T 1u6g_C 547 V 547 (1230)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.57 E-value=6.3e-14 Score=139.02 Aligned_cols=367 Identities=16% Similarity=0.145 Sum_probs=253.9
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.++|.+.+.-+..++..++... +.... -+++.|.+-|++++ +.+|..|+++|+++.. ++.. .
T Consensus 76 ik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~-----~ 141 (618)
T 1w63_A 76 LKLIASQKFTDKRIGYLGAMLLLDER--QDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC-----R 141 (618)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH-----H
T ss_pred HHHHcCCchHHHHHHHHHHHHHhCCC--cHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH-----H
Confidence 45567888888888888888877553 21111 14778888899988 8999999999999985 3332 2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
.+++.+..++.++++.+|..|+.++.++....|+... +.++.+..++ .+.++.++..|+.+|..++...+.. .
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~-~ 214 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDM-L 214 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHH-H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHH-H
Confidence 4578899999999999999999999999865554322 3566666677 6788999999999999998753221 2
Q ss_pred hhhhchHHHHHHhhcC---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC------CC
Q 012897 162 DQVRPALPALAQLVHS---------------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG------HP 220 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~ 220 (454)
.....++|.++.+|.+ .++..+..++.+|..++...+.... .+.+.|..++. +.
T Consensus 215 ~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccch
Confidence 2345667777776652 4788999999999999977654322 44445555442 23
Q ss_pred CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHH
Q 012897 221 SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 221 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
+..+...|++++..+... + .+. ...+..|..++.++ ++.+|..|+.+|..++...+.. + ....+.++.
T Consensus 290 ~~aV~~ea~~~i~~l~~~-~----~l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~ 357 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSE-S----GLR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVD 357 (618)
T ss_dssp HHHHHHHHHHHHHHSCCC-H----HHH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC-H----HHH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHH
Confidence 456888889998887532 1 111 14567888889888 8999999999999998754432 2 235678889
Q ss_pred HhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccc
Q 012897 301 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADV 380 (454)
Q Consensus 301 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 380 (454)
++.+++..+|..|+.++..++...+.+. +++.|...+.+.+++++..++.+|..+........ .|..
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-----~~~v 424 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-----RWHI 424 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-----HHHH
T ss_pred HccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-----HHHH
Confidence 9999999999999999999988644222 34666677777899999999999999987532111 1133
Q ss_pred cHHHHHHHHhc------cHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 381 NQYAQLVEEAE------GLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 381 ~~~~~~l~~~g------~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
..+...+...| .+..+.++... +++.+..+...+-.++.
T Consensus 425 ~~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~~~~v~~L~~~l~ 469 (618)
T 1w63_A 425 DTIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMHAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHh
Confidence 33444455444 23444444332 23455555554444443
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.47 E-value=2.1e-12 Score=110.10 Aligned_cols=187 Identities=21% Similarity=0.185 Sum_probs=157.9
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 012897 38 SGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCR 117 (454)
Q Consensus 38 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 117 (454)
.+.++.|+..|++++ +.+|..|++.|+.+.. ...++.|+.++.++++.+|..++++|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~--- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 80 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 456899999999988 9999999999998765 2578999999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
+.++.++..+ .++++.++..++++|..+.. ...++.|..++.++++.++..++.+|+.+..
T Consensus 81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 2477888888 77889999999999999864 3578999999999999999999999999853
Q ss_pred hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 198 NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 198 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
...++.|..++.++++.+|..++.+|+.+.. ...++.|..++.++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2467889999999999999999999999853 24567888899888 99999999999998
Q ss_pred HhcC
Q 012897 278 ITAG 281 (454)
Q Consensus 278 l~~~ 281 (454)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8764
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.47 E-value=2.2e-12 Score=109.99 Aligned_cols=188 Identities=22% Similarity=0.210 Sum_probs=157.3
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCC
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPP 160 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (454)
.+.++.|+..|.++++.+|..+++.|+.+.. + ..++.|++.+ .++++.++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~---------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKAL-KDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--c---------cHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence 4578999999999999999999999999843 1 3578889988 67789999999999999863
Q ss_pred hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 161 FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
...++.+..++.++++.++..++++|..+.. .+.++.|+.++.++++.+|..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 3678999999999999999999999998853 2467889999999999999999999999853
Q ss_pred cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 241 FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
...++.|..++.++ ++.+|..|+++|+.+.. + ..++.|..+++++++.||..|..+|.++
T Consensus 142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 14578899999888 99999999999999853 2 2567788889999999999999999998
Q ss_pred cCCC
Q 012897 321 TSGG 324 (454)
Q Consensus 321 ~~~~ 324 (454)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7643
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.46 E-value=8e-12 Score=105.59 Aligned_cols=185 Identities=22% Similarity=0.224 Sum_probs=157.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
+..+.++++|.++++.+|..+++.|+.+.. + ..++.+++.+ .++++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E---------RAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--h---------hHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 467899999999999999999999999843 1 2478888999 67889999999999999853
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
...++.+..++.++++.++..++++|..+.. ...++.+..++.++++.+|..|+++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3678999999999999999999999998753 2467888999999999999999999999853
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
...++.|..++.++ ++.+|..|+++|+.+. .+ ..++.|..++.++++.+|..|..+|.++-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999984 22 25677888889999999999999999874
Q ss_pred C
Q 012897 322 S 322 (454)
Q Consensus 322 ~ 322 (454)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.45 E-value=4.3e-12 Score=107.27 Aligned_cols=184 Identities=22% Similarity=0.194 Sum_probs=157.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 012897 39 GVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRD 118 (454)
Q Consensus 39 ~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 118 (454)
+..+.++++|.+++ +.+|..|+++|+.+.. ...++.|+.+|.++++.+|..++++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 45788999999999 9999999999998765 2468999999999999999999999999842 1
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
..++.++..+ .++++.++..++++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2477888888 67889999999999999854 3578899999999999999999999998853
Q ss_pred HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHH
Q 012897 199 DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNI 278 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl 278 (454)
...++.|..++.++++.+|..|+.+|+.+.. ...++.|..++.++ ++.+|..|..+|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2567889999999999999999999999842 13567888889888 999999999999887
Q ss_pred h
Q 012897 279 T 279 (454)
Q Consensus 279 ~ 279 (454)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=3.1e-11 Score=119.34 Aligned_cols=323 Identities=13% Similarity=0.116 Sum_probs=226.7
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++.+.++|...+..+.-++..++... ++... + +++.+.+-+++++ +.++..|+.+++++.. ++...
T Consensus 80 vkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~-L----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~----- 145 (621)
T 2vgl_A 80 VNLLSSNRYTEKQIGYLFISVLVNSN-SELIR-L----INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE----- 145 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHH-H----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCC-cHHHH-H----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----
Confidence 56788999999999999998887553 22111 1 3667888889999 9999999999999975 44333
Q ss_pred CChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 82 GAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 82 g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.+++.+.+++ .+.++-+|..|+.++.++....|.. +...+.++.+.+++ .+.++.++..|+.++..++...+.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPE- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChH-
Confidence 3578889999 8899999999999999998655432 21236788899988 788899999999999999876422
Q ss_pred ChhhhhchHHHHH----HhhcCC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCC--
Q 012897 160 PFDQVRPALPALA----QLVHSN-------------DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGH-- 219 (454)
Q Consensus 160 ~~~~~~~~l~~l~----~ll~~~-------------~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~-- 219 (454)
.....+|.++ +++... ++..+...+..+..++... +.....+.+ ++..++..+.+
T Consensus 221 ---~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ 295 (621)
T 2vgl_A 221 ---EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPP 295 (621)
T ss_dssp ---HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCc
Confidence 1223444444 444321 6789999999999988643 333232322 34444433211
Q ss_pred -------CCC--cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 220 -------PSP--SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 220 -------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
.+. .+...++.++..+.. .+.... .++..|..++.++ ++.+|..++..+..++...+. . ..+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~ 366 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAV 366 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHH
Confidence 122 677778888877752 111111 4567788888878 899999999999999875432 1 122
Q ss_pred hCCChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 291 DAGLVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 291 ~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
....+.++..+. +++..++..++..+..++.. ..... ++..|...+...+.+++..++..+..+...
T Consensus 367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 367 -KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 346778888888 88999999999999999752 33333 355666666677888887777777777543
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.36 E-value=1.4e-11 Score=121.81 Aligned_cols=325 Identities=12% Similarity=0.106 Sum_probs=219.0
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFL--MREDYPQLQFEAAWALTNIASGTSENTKVVID 80 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 80 (454)
+.|+++|+.++-.|+++|.++... + +. ..+++.+.+++ .+.+ +.+|..|+.++.++....++... .
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~~---e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~---~ 185 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGSR---E----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP---M 185 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCCH---H----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC---C
T ss_pred HhcCCCCHHHHHHHHHHhhccCCH---H----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC---c
Confidence 456788999999999999988532 1 22 24678889999 7788 99999999999999985554332 2
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc----h--h----------hhhhHHHH
Q 012897 81 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN----E--R----------AKLSMLRN 144 (454)
Q Consensus 81 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~~~~~~~ 144 (454)
.++++.+..+|.++++.++..|+.++..++..++..- ...++.+++.+. . . +++-.+..
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 4899999999999999999999999999986554310 112344444332 1 1 15778888
Q ss_pred HHHHHHhhcCCCCCCChhhhhchHHHHHHhh---------cCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897 145 ATWTLSNFCRGKPQPPFDQVRPALPALAQLV---------HSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213 (454)
Q Consensus 145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 213 (454)
.+..+..++...+.........+++.++..+ ++.+ ..+...++.++..+.. .+.... .++..|
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L 334 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQL 334 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHH
Confidence 8888888775321111111223333333322 1122 3788888888888763 222212 456678
Q ss_pred HHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc-CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhC
Q 012897 214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT-HSHKKSIKKEACWTISNITAGNRDQIQAVIDA 292 (454)
Q Consensus 214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 292 (454)
..++.++++.++..++..|..++...+. .. .+ ......++..|+ ++ +..+|..++.++..++. +.++..
T Consensus 335 ~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~---- 404 (621)
T 2vgl_A 335 GQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ---- 404 (621)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred HHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH----
Confidence 8888888999999999999999976542 11 22 246678888888 77 89999999999999974 444443
Q ss_pred CChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 293 GLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 293 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
++..|...+...+.+.+..+..+++.++..-.+.. .-++..|++++......+...+...+..++...
T Consensus 405 -Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 405 -IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence 45568888888899999999999999875211111 113566666666544444445555666665443
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.24 E-value=1.9e-09 Score=84.34 Aligned_cols=218 Identities=14% Similarity=0.157 Sum_probs=174.8
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
+..++..++.+|++.-..++.+|+.++.+++...++....+ +..|+.++..+...........+++.++..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---- 100 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---- 100 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh----
Confidence 44578899999999999999999999999998877765543 556677776666667767777888888764
Q ss_pred ChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC
Q 012897 160 PFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD 239 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 239 (454)
......+.+|.+..-.+-++++++.+..++|..++..++.... +++..+..++.+++..-+..|+..++.+..+.
T Consensus 101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 3455678899999988999999999999999999988876544 56778999999998888888999998888765
Q ss_pred ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHH
Q 012897 240 DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISN 319 (454)
Q Consensus 240 ~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 319 (454)
..+.. ..++.|..+|.+. +.-||..|..+|.+++..++..+.. +..-++-+++.+..++.....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 54333 6789999999999 9999999999999999988874432 2234455677788899999999988
Q ss_pred hcCC
Q 012897 320 ATSG 323 (454)
Q Consensus 320 l~~~ 323 (454)
++..
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.13 E-value=8.6e-10 Score=90.19 Aligned_cols=227 Identities=17% Similarity=0.150 Sum_probs=174.4
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
.+.+..+..+++..|+.++..++.+|..+....+.......-..+++.++.++.+++..+...|++||..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999876544445444458999999999999999999999999999987764433
Q ss_pred hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC
Q 012897 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG 324 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 324 (454)
.+. .+...+..+++++ ++-.+.+|+-.++.+--.+.. ..++..+.+++.+.+++++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 332 4567888999988 999999999999988433211 235777888888899999999999999998864
Q ss_pred CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCC
Q 012897 325 THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHD 403 (454)
Q Consensus 325 ~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~ 403 (454)
.... .-.+++.-+-.++++.|+.++..++.++..++...-.. +...-+ .+......++. ...
T Consensus 182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~-----------~~~~~~--~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE-----------NVKIEL--LKISRIVDGLVYREG 244 (265)
T ss_dssp SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS-----------CCHHHH--HHHHHHHHHGGGCSS
T ss_pred CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH-----------hHHHHH--HHHHHHHHHHHHhcC
Confidence 3211 12346777888999999999999999999998762211 112222 23445667777 788
Q ss_pred CHHHHHHHHHHHHHh
Q 012897 404 NNEIYEKAVKILETY 418 (454)
Q Consensus 404 ~~~v~~~a~~~l~~~ 418 (454)
.|.++.+|..+.+.+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 899999998876643
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.13 E-value=3.4e-09 Score=106.19 Aligned_cols=265 Identities=14% Similarity=0.156 Sum_probs=187.0
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHHHhcCCCchhhHHHH
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRED-------YPQLQFEAAWALTNIASGTSENTKVVI 79 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 79 (454)
++++.++..|+..|.-+-.+... . ++..|...|.+++ .+.++..|+..|+-+..++...
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----- 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----- 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-----
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-----
Confidence 67889999999999988777421 1 3566777776544 3678999999999987643211
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 80 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 80 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
.+++.|..++.+.+..++..++.+|+.+...... .+ ++..++..+..+.+..+++.++.+|+.+....
T Consensus 472 --ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--- 539 (963)
T 4ady_A 472 --EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--- 539 (963)
T ss_dssp --HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence 2467788888877778888888899887422211 11 25566666656667889999999999886553
Q ss_pred ChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhc
Q 012897 160 PFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 237 (454)
...++.++..|. +.++-++..++.+++.-....... ..++.|++.+ .+.+..+|..|+..|+.+..
T Consensus 540 -----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 540 -----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp -----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence 244566666665 578888888888776443332211 1234344443 45677899999999999887
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 317 (454)
+.++ .++.++..|.+..++.+|..|+++|+.++.+++. ..++..|..+..+.+..||..|+.+|
T Consensus 608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 6542 3455666554444999999999999999986543 12566788888888999999999999
Q ss_pred HHhcCCCC
Q 012897 318 SNATSGGT 325 (454)
Q Consensus 318 ~~l~~~~~ 325 (454)
+.+....+
T Consensus 672 G~Ig~gtn 679 (963)
T 4ady_A 672 SMILIQQT 679 (963)
T ss_dssp HHHSTTCC
T ss_pred HHHhcCCc
Confidence 99987543
No 68
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.11 E-value=3.8e-09 Score=95.23 Aligned_cols=272 Identities=13% Similarity=0.061 Sum_probs=161.6
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
++++.++|..++.-...++..++... .+.. + +++.+.+=+++++ +-+|-.|+++|+++.. ++....
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~---- 139 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA---- 139 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH----
Confidence 56889999999999999998887663 3322 1 5778889999999 9999999999999986 343333
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
+.+.+.+.+.+.++-+|..|+.+..++....|+.. .+.+..+-+++ .+.++.++..|+.++..+...+
T Consensus 140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d----- 207 (355)
T 3tjz_B 140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND----- 207 (355)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-----
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-----
Confidence 45778888999999999999999999987777532 24688888888 7778889999999999998753
Q ss_pred hhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 162 DQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
...+..++..+... ++-.+...++.+..++..+ +. ....+++.+..+|++.++.|...|++++..+..
T Consensus 208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 22344445444432 4555556666665555443 21 223677888889999999999999999998865
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAI 317 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 317 (454)
..... . ..++..+..++.++ ++.+|..|+..|..+....|..... .-..+.+++.+++..+...|..+|
T Consensus 280 ~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 280 CSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp -------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------------
T ss_pred CCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 22211 1 24456777778888 8899999999999998876665432 334577778888877776665555
Q ss_pred H
Q 012897 318 S 318 (454)
Q Consensus 318 ~ 318 (454)
.
T Consensus 349 l 349 (355)
T 3tjz_B 349 L 349 (355)
T ss_dssp -
T ss_pred h
Confidence 4
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.07 E-value=2e-09 Score=107.79 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=155.6
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCC-
Q 012897 35 VIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGD- 112 (454)
Q Consensus 35 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~- 112 (454)
..+..++| +++.|++++ +..|..|+++|++++. ++..+..+...+++..++. +|.+++.++|..|+++|.||+.+
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 33445555 567799998 8999999999999998 8899999999999887654 78889999999999999999843
Q ss_pred ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHH
Q 012897 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSY 192 (454)
Q Consensus 113 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~ 192 (454)
.+..+..+.+.|++++|..++.+. . ..+............ .....+ ..+...++.+|.+
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~-~--------~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~ 166 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAV-L--------ETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGL 166 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHH-H--------HHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhh-H--------HHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHH
Confidence 567788899999999999988321 1 112222111100000 001111 1234556677888
Q ss_pred hccCChHHHHHHHHhCcHHHHHHhcCCC---CCcchhhHHHHHhHhhccCccchhhhhccCChH---HHHHhhcCCcchh
Q 012897 193 LSDGTNDKIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGDDFQTQCIITYGALP---YLLGLLTHSHKKS 266 (454)
Q Consensus 193 l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~~L~~~~~~~ 266 (454)
++..+......+...+.++.++..+.+. ..+++..|+.+|..++..++...+.+.+.+... .++.+.+ . ...
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~ 244 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDP 244 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCT
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcH
Confidence 8877777777788888899999888442 346899999999999998887777777765433 3333333 3 334
Q ss_pred HHHHHHHHHHHHh
Q 012897 267 IKKEACWTISNIT 279 (454)
Q Consensus 267 v~~~a~~~L~nl~ 279 (454)
.+..+++.+.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 5778889998875
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.06 E-value=1.3e-08 Score=91.81 Aligned_cols=276 Identities=13% Similarity=0.130 Sum_probs=160.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDL 119 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 119 (454)
+...+++++.+++ ..++......+.+++...++.. =++..+.+=++++++-+|-.|+++++++.... .-+.
T Consensus 69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA 139 (355)
T ss_dssp HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence 4667788999999 8999999888988888533321 24788888899999999999999999996432 2222
Q ss_pred HHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChH
Q 012897 120 VLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 120 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
..+.+.+.+ .+.++.|+..|+.+...|.... .....++++.+..++.+.++.++.+|+.++..+...+..
T Consensus 140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 244555666 7889999999999999998654 234467899999999999999999999999999876542
Q ss_pred HHHHHHHhCcHHHHHHhcCCC---CCcchhhHHHHHhHhhccC-ccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 200 KIQAVIEAGVCPRLVELLGHP---SPSVLIPALRTVGNIVTGD-DFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 200 ~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
.. ..++..+... ++-.+...++.+..++..+ +. ....+++.+..+|++. ++.|..+|++++
T Consensus 210 a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I 274 (355)
T 3tjz_B 210 AV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI 274 (355)
T ss_dssp HH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred HH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 22 2233333222 2233333445554555433 21 2236778888899988 999999999999
Q ss_pred HHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHH
Q 012897 276 SNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTV 355 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~ 355 (454)
..+...+.. .. ..++..|..++.++++.+|-.|+..|..++... +.... ..-.-+..+++++|..+...
T Consensus 275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~-P~~v~-----~~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH-PSAVT-----ACNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC-cHHHH-----HHHHHHHHHccCCcHhHHHH
Confidence 988652222 11 345677888888999999999999999887753 22221 24556777888888887766
Q ss_pred HHHHH
Q 012897 356 CLEGL 360 (454)
Q Consensus 356 al~~L 360 (454)
|+..|
T Consensus 344 Aittl 348 (355)
T 3tjz_B 344 AITTL 348 (355)
T ss_dssp -----
T ss_pred HHHHh
Confidence 65443
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.96 E-value=8.1e-08 Score=75.26 Aligned_cols=218 Identities=14% Similarity=0.209 Sum_probs=167.8
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccch
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQT 243 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~ 243 (454)
..++..++.+|+++-..++.+|+..+.+++...++....+. ..|+.+++ +..-.......++++.++...++..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 57888999999999999999999999999998887766444 45666654 3444566788899999998777544
Q ss_pred hhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 244 QCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
. +.++.+..-+.-+ ++++|.+..++|..++..+|.... +++..+..++.+++..=+..|+..+..+..+
T Consensus 106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 4 5678888888888 999999999999999998887653 4566788999988877788888888777664
Q ss_pred CCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC
Q 012897 324 GTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD 403 (454)
Q Consensus 324 ~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 403 (454)
+ . .++ .-+++.|..+|.++|.-|+..++.+|.++....++ ++..+. .++++ .++.
T Consensus 175 ~-~---~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-------------lRkii~-----~kl~e-~~D~ 229 (253)
T 2db0_A 175 S-F---KYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-------------LRKVVI-----KRLEE-LNDT 229 (253)
T ss_dssp T-H---HHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-------------HHHHHH-----HHHHH-CCCS
T ss_pred C-c---ccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-------------HHHHHH-----HHHHH-hcCc
Confidence 3 2 222 23689999999999999999999999999987665 344433 44444 5777
Q ss_pred CHHHHHHHHHHHHHhcCcCC
Q 012897 404 NNEIYEKAVKILETYWLEED 423 (454)
Q Consensus 404 ~~~v~~~a~~~l~~~~~~~~ 423 (454)
++.++..+..-+.++.--|.
T Consensus 230 S~lv~~~V~egL~rl~l~e~ 249 (253)
T 2db0_A 230 SSLVNKTVKEGISRLLLLEG 249 (253)
T ss_dssp CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888888877654443
No 72
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=5.5e-09 Score=104.67 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=146.1
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhcCCCCCcchhhHHHHHhHhhccC-ccch
Q 012897 166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLGHPSPSVLIPALRTVGNIVTGD-DFQT 243 (454)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 243 (454)
.++|. ++.|+++++..|..||++|++++.. +.....+...+++..+ ..+|.+++.++|.+|+++|.||+... ...+
T Consensus 35 ~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPV-LKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHH-HHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHH-HHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 45554 4668999999999999999999964 5555667777888765 56789999999999999999999754 3456
Q ss_pred hhhhccCChHHHHHhhcCCc--------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh
Q 012897 244 QCIITYGALPYLLGLLTHSH--------------------KKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ 303 (454)
Q Consensus 244 ~~~~~~~~l~~L~~~L~~~~--------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 303 (454)
..+++.++++.|..++.... -..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 67888899999998885320 0123456778888998888888888888899999999886
Q ss_pred hc---chhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH---HHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 304 NA---EFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK---PLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 304 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~---~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
.. ..+++..|+.+|..++.. +.+....+.+.+... .+..+.+..+ ..+..+++.|.|++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence 53 357999999999999886 456666666655433 3333333333 345567788888864
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.86 E-value=9.8e-08 Score=78.24 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=145.2
Q ss_pred cccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC
Q 012897 2 VAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 2 v~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+++|+++|+.++..++.+|.++++.- +...+...-...++.++.++.+.+ ..+...|++||..+..+.+-....+..
T Consensus 39 ~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~y~K- 115 (265)
T 3b2a_A 39 LELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK- 115 (265)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHHHHH-
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHHHHH-
Confidence 46789999999999999999999884 334444555668999999999999 999999999999999866555555543
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh
Q 012897 82 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF 161 (454)
Q Consensus 82 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (454)
++.++..++.++++-++..++..++.+---. ..+ . ++..+.+++ .+.+..++..++.++.+++....+..
T Consensus 116 -l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~- 185 (265)
T 3b2a_A 116 -AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSK-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSG- 185 (265)
T ss_dssp -HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCH-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCC-
T ss_pred -HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chH-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHH-
Confidence 5788999999999999999999999983211 111 1 256777888 88999999999999999998753332
Q ss_pred hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 162 DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
....++.-+-.++++.|+.++..|+.++..+...
T Consensus 186 -i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 186 -HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp -CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3356667778899999999999999999988765
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.84 E-value=9.6e-07 Score=88.74 Aligned_cols=291 Identities=14% Similarity=0.114 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM---REDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 87 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 87 (454)
..+..|+..|.-+-.... .+++..|-+.|. +++ +.++..|+..|+-+..+... .++..|
T Consensus 373 ~~k~sA~aSLGlIh~g~~---------~~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL 434 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNL---------LEGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYL 434 (963)
T ss_dssp HHHHHHHHHHHHHTSSCT---------TTHHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHH
T ss_pred HHHHHHHHHhhhhccCch---------HHHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHH
Confidence 345556666665554431 123566666776 445 89999999999999884432 146777
Q ss_pred HHhhCCCC--------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCC
Q 012897 88 VKLLASPS--------DDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQP 159 (454)
Q Consensus 88 ~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 159 (454)
...|.+++ +.++..|+..|+-+...+. +.. ++..|...+ .+.+..++..++.+|+.+.....
T Consensus 435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTg-- 504 (963)
T 4ady_A 435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NIE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTG-- 504 (963)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CHH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CHH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccC--
Confidence 77776544 7788899999998753332 112 256677777 33444566788888887754421
Q ss_pred ChhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc-CCCCCcchhhHHHHHhHhhc
Q 012897 160 PFDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-GHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 160 ~~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 237 (454)
. ..++..|+..+ .+.+..+++.++.+|+.+....++. ++.++..| .+.++.+|..++.+++--..
T Consensus 505 n----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 505 K----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp C----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred C----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1 23344444433 4567889999999999887665544 34444444 35778889998888876555
Q ss_pred cCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh-hhcchhhHHHHHHH
Q 012897 238 GDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL-QNAEFDIKKEAAWA 316 (454)
Q Consensus 238 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~a 316 (454)
+.... ..++.|+..+.+..+..+|..|+.+|+.+..+.+ ..++.++..+ ++.++.+|..|+.+
T Consensus 572 GTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 572 GTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp TSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred CCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44322 2345556555444378899999999999887654 3466666644 45799999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 317 ISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 317 L~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
|+.+........ ++..|..+.++.++.|+..|+.+|..+...
T Consensus 636 LGli~aGn~~~~--------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 636 LGIACAGKGLQS--------AIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHTSSSCCHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHhccCCCcHH--------HHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 999976543211 466777888999999999999999998754
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=5.6e-09 Score=90.75 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=140.6
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhh
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQ 163 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 163 (454)
-+.+.+.+.+.+...|..++..|..++...+...... -..+++.+...+.++.+..++..++.++..|+......-...
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3457788889999999999999999875422210000 012355566666337788999999999999996532222344
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccC-cc-
Q 012897 164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGD-DF- 241 (454)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~- 241 (454)
...++|.++..+.+.++.++..+..++..++....- . .+++.+...+.+.++.+|..++..|+.+.... +.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 577899999999999999999999999999875431 2 46778889999999999999999999976543 22
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
.....+. .+++.+..++.+. ++.+|..|..+++.++.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 1122222 6889999999988 99999999999999885
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.83 E-value=1.4e-08 Score=88.28 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=141.8
Q ss_pred HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897 128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIE 206 (454)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 206 (454)
.+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-.........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466666 677889999999999999876322111223577888999995 899999999999999998543322233332
Q ss_pred hCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcC-CHHH
Q 012897 207 AGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAG-NRDQ 285 (454)
Q Consensus 207 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~-~~~~ 285 (454)
.+++.++..+.++++.+|..+..+|..++.... . ..+++.+...+++. ++.+|..++..|..+... .++.
T Consensus 98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 688999999999999999999999999987432 1 14678889999988 999999999999997653 2321
Q ss_pred -HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 286 -IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 286 -~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
....+ ..+++.+..++.+.++++|..|..+++.++..
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12223 25789999999999999999999999998764
No 77
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.81 E-value=1.2e-06 Score=80.88 Aligned_cols=322 Identities=11% Similarity=0.099 Sum_probs=194.9
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCC-hHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 81 HGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSP---RCRDLVLSQGA-LIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 81 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~-i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
..++..++.+|.. .+.++.+..+..+..+...++ .....+..... ...+.......++.-....++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4577889998875 779999999999999887765 32223222221 222333222334455556666666666544
Q ss_pred CCCCChhhhhchHH--HHHHhhcCC-ChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhcC----CC------
Q 012897 156 KPQPPFDQVRPALP--ALAQLVHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLG----HP------ 220 (454)
Q Consensus 156 ~~~~~~~~~~~~l~--~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~----~~------ 220 (454)
... .......++. -+...|.+. +...+.-++.++..+......+ ..+.+. ..++.++.++. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 3333344444 445555552 3455667888888877654432 334432 24555544332 11
Q ss_pred -------CCcchhhHHHHHhHhhccCccchhhhhccCCh--HHHHHhhcCCcchhHHHHHHHHHHHHhcCCH----HHHH
Q 012897 221 -------SPSVLIPALRTVGNIVTGDDFQTQCIITYGAL--PYLLGLLTHSHKKSIKKEACWTISNITAGNR----DQIQ 287 (454)
Q Consensus 221 -------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~----~~~~ 287 (454)
..+++..++.|++-++...+ ..+.+...++. ..|+.+++.....++-+-++.++.|+....+ ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 23457889999999987544 44555554433 5667777765578899999999999998541 2223
Q ss_pred H-HHhCCChHHHHHHhhhc---chhhHHHHHHHHHHh---------------------cCCCCHHHHHHHHHc-------
Q 012897 288 A-VIDAGLVGPLVNLLQNA---EFDIKKEAAWAISNA---------------------TSGGTHEQIKYLVRE------- 335 (454)
Q Consensus 288 ~-l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l---------------------~~~~~~~~~~~l~~~------- 335 (454)
. ++..++ +.+++.+... |+++....-.....+ ....+......|+.+
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 2 223334 4455555542 555543322222111 111111111122221
Q ss_pred ---CCcHHHhhccCC----------CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC
Q 012897 336 ---GCIKPLCDLFVC----------PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH 402 (454)
Q Consensus 336 ---~~i~~L~~~l~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 402 (454)
.+++.|++++++ .|+.+...|+.=++.+++..+. .+..+.+.|+-+.+.+|++|
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhcC
Confidence 236778888873 3677888899999999987654 46688899999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 012897 403 DNNEIYEKAVKILETYW 419 (454)
Q Consensus 403 ~~~~v~~~a~~~l~~~~ 419 (454)
+|++|+..|...++.+.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988764
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4.7e-08 Score=84.78 Aligned_cols=190 Identities=12% Similarity=0.170 Sum_probs=139.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 012897 44 FVEFLMREDYPQLQFEAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--PRCR- 117 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~--~~~~- 117 (454)
+.+.+.+.+ +.-|..|+..|.. ++.+.++......+ ..++..|.+.+ ++.+..++..|+.+++.++..- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 566778888 7999999999999 87533332200001 13577788888 6889999999999999998422 2222
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCCh-hhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPF-DQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
.... ..++.++..+ .+....++..+..++..++...+.... .....+++.+...+.+.++.++..++.+|..++..
T Consensus 100 ~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2221 1477888888 666788999999999988875422111 11567889999999999999999999999998865
Q ss_pred Ch---HHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhc
Q 012897 197 TN---DKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVT 237 (454)
Q Consensus 197 ~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 237 (454)
.. ......+...+++.+..++.++++++|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44 333344424899999999999999999999999999885
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.9e-08 Score=85.27 Aligned_cols=191 Identities=10% Similarity=0.084 Sum_probs=140.6
Q ss_pred HHHHhchhhhhhHHHHHHHHHHh-hcCCCCCCC--hhhhhchHHHHHHhh-cCCChhHHHHHHHHHHHhccCCh-HHHH-
Q 012897 129 LLAQLNERAKLSMLRNATWTLSN-FCRGKPQPP--FDQVRPALPALAQLV-HSNDEEVLTDACWALSYLSDGTN-DKIQ- 202 (454)
Q Consensus 129 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~- 202 (454)
+.+.+ .+.+..-|..++..|.. ++...+... ......++..+.+.+ .+.+..++..++.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34445 56778889999999999 875533222 222346788888999 78899999999999999985322 1222
Q ss_pred HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 282 (454)
Q Consensus 203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~ 282 (454)
.... .+++.++..+.+..+.++..+..++-.++...+.....-.-..+++.|...|+++ ++.+|..++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2222 4788999999999899999999999888875432111000114678899999999 9999999999999998633
Q ss_pred H---HHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 283 R---DQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 283 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+ ......+...++|.|..++.+.+++||..|..+++.+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 333344435799999999999999999999999998865
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=1.6e-08 Score=78.51 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=91.6
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQ 287 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 287 (454)
..++.+..+|.++++.+|..|+++|+.+.. ..++.|...|+++ ++.+|..|+++|+++.. +
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--H----
Confidence 567888999999999999999999987642 1258899999988 99999999999998853 2
Q ss_pred HHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897 288 AVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 362 (454)
Q Consensus 288 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~ 362 (454)
..++.|+..+.++++.||..|+++|+++.. ++ .++.|..+++++++.++..+.++|.+
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 247788899999999999999999999852 22 46778888899999999999988764
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.55 E-value=8.6e-06 Score=85.34 Aligned_cols=377 Identities=10% Similarity=0.060 Sum_probs=213.5
Q ss_pred CCHHHHHHHHHHHHHHhccCC---------CCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-CchhhHH
Q 012897 8 DDSSLQLEATTQFRKLLSIER---------SPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASG-TSENTKV 77 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 77 (454)
.+..+|..|+..|++.+...- ++..+..++. .++..+.+.+ +.+|..++.++..++.. .++..
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~W-- 121 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAISSIADSDFPDRW-- 121 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTC--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccch--
Confidence 468999999999999875420 1123333343 3455555566 89999999999999872 11111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hhhHHHHH--hcCChHHHHHH-------hchh-hh---
Q 012897 78 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS------PRCRDLVL--SQGALIPLLAQ-------LNER-AK--- 138 (454)
Q Consensus 78 ~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~--~~~~i~~l~~~-------l~~~-~~--- 138 (454)
.++++.|++.+.++++..+..++.++..++... +..+..+. -....+.++++ +... .+
T Consensus 122 ---p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~ 198 (960)
T 1wa5_C 122 ---PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS 198 (960)
T ss_dssp ---TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHH
T ss_pred ---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 357899999998888888999999999998522 11221110 01123333333 3221 11
Q ss_pred ----hhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhcCC------C---------hhHHHHHHHHHHHhccCCh
Q 012897 139 ----LSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVHSN------D---------EEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 139 ----~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~v~~~a~~~L~~l~~~~~ 198 (454)
.++...++.+++.+.... +..........++.+..++... + ..++..++.++..+....+
T Consensus 199 ~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~ 278 (960)
T 1wa5_C 199 LNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE 278 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 133445667777665432 1111112244556666666431 1 2467888888888876555
Q ss_pred HHHHHHHHhCcHHHHHHhcC-----CCCCcchhhHHHHHhHhhccCccchhhhhc-cCChH-----HHHHhhcC------
Q 012897 199 DKIQAVIEAGVCPRLVELLG-----HPSPSVLIPALRTVGNIVTGDDFQTQCIIT-YGALP-----YLLGLLTH------ 261 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~-----~L~~~L~~------ 261 (454)
......+. .+++..+..+. ...+.++..++..+..++.... .. .++. ...++ .++..|.-
T Consensus 279 ~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e 355 (960)
T 1wa5_C 279 DVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQIILPNVTLREEDVE 355 (960)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHHTHHHHHSCCGGGTT
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHHHhHHhcCCCHHHHH
Confidence 44333222 44555555553 2345678888888888775322 11 1221 12222 33333310
Q ss_pred ----------------CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhh------hcchhhHHHHHHHHHH
Q 012897 262 ----------------SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQ------NAEFDIKKEAAWAISN 319 (454)
Q Consensus 262 ----------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~ 319 (454)
......|..|..+|..++...++..-. .+++.+.+.+. +.++..|..|+.+++.
T Consensus 356 ~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~----~~l~~i~~~l~~~~~~~~~~w~~reaal~alga 431 (960)
T 1wa5_C 356 LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTN----IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTA 431 (960)
T ss_dssp TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHH----HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 001246778888888887644432211 13444444554 4567889999999999
Q ss_pred hcCCCC-HH----------HHHHHHHcCCcHHHhhccCCC---CHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHH
Q 012897 320 ATSGGT-HE----------QIKYLVREGCIKPLCDLFVCP---DPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQ 385 (454)
Q Consensus 320 l~~~~~-~~----------~~~~l~~~~~i~~L~~~l~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (454)
++..+. .. ....+....+++ .+.++ ++.++..+++++..+...-.. .
T Consensus 432 ia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---------------~ 492 (960)
T 1wa5_C 432 LAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLTK---------------A 492 (960)
T ss_dssp HHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSCH---------------H
T ss_pred HHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCCH---------------H
Confidence 975421 00 111221112233 33444 889999999999998754211 1
Q ss_pred HHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Q 012897 386 LVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 386 ~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
.+ ...++.+.+.+.++++.|+..|...+.++....
T Consensus 493 ~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 493 QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 11 122445555566778999999999999988754
No 82
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.54 E-value=2.2e-08 Score=77.66 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=93.4
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 012897 37 QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 37 ~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
....++.+..+|++++ +.+|..|+++|+.+.. ..++.|+.+|+++++.+|..++++|+++.. +.
T Consensus 10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER- 73 (131)
T ss_dssp -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence 3456888999999988 8999999999887643 126899999999999999999999999852 11
Q ss_pred HHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHh
Q 012897 117 RDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYL 193 (454)
Q Consensus 117 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l 193 (454)
.++.|...+ .++++.++..++++|..+.. ...++.|..+++++++.++..++.+|..+
T Consensus 74 --------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 --------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 377888888 78889999999999999863 36789999999999999999999988653
No 83
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.51 E-value=8.5e-06 Score=85.37 Aligned_cols=340 Identities=9% Similarity=0.015 Sum_probs=193.4
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc------hhhHH
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS------ENTKV 77 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~ 77 (454)
.+.++++.+|...+.++..++...-+. -..++++.|++++++++ +..+..++.+|..++.... +.+..
T Consensus 93 ~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~ 166 (960)
T 1wa5_C 93 LMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166 (960)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 344455788888888888888753111 12567999999999887 7889999999999987221 22221
Q ss_pred HH--hCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHHhchh--
Q 012897 78 VI--DHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAG-DSPRCRDLVLSQGALIPLLAQLNER-- 136 (454)
Q Consensus 78 ~~--~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~-- 136 (454)
+. -....+.++. .+.++.. .+...++.++..+.. +.+..-...+ ...++.+.+++...
T Consensus 167 l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p 245 (960)
T 1wa5_C 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNP 245 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCC
Confidence 10 0112333333 2444221 233346666666542 2222111100 11234444544221
Q ss_pred ---h---------hhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-----CCChhHHHHHHHHHHHhccCChH
Q 012897 137 ---A---------KLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-----SNDEEVLTDACWALSYLSDGTND 199 (454)
Q Consensus 137 ---~---------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~ 199 (454)
. ...++..++.++..+....+..-......+++.+...+. ..++.++..++..+..++.....
T Consensus 246 ~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~ 325 (960)
T 1wa5_C 246 LLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY 325 (960)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH
T ss_pred cccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH
Confidence 0 124677888888877754321111233455666666664 34678889999999888754221
Q ss_pred HHH-----HHHHhCcH-HHHHHhcC-----------------------CCCCcchhhHHHHHhHhhccCccchhhhhccC
Q 012897 200 KIQ-----AVIEAGVC-PRLVELLG-----------------------HPSPSVLIPALRTVGNIVTGDDFQTQCIITYG 250 (454)
Q Consensus 200 ~~~-----~~~~~~~i-~~L~~ll~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 250 (454)
. . ..+. .++ +.++..+. +.....|..|..+|..++...+ +.++. .
T Consensus 326 ~-~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~-~ 399 (960)
T 1wa5_C 326 F-EIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTN-I 399 (960)
T ss_dssp H-GGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHH-H
T ss_pred H-HHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHH-H
Confidence 1 1 1111 222 22333331 1112567788888888886433 11211 2
Q ss_pred ChHHHHHhhc------CCcchhHHHHHHHHHHHHhcCC--HH----------HHHHHHhCCChHHHHHHhhhc---chhh
Q 012897 251 ALPYLLGLLT------HSHKKSIKKEACWTISNITAGN--RD----------QIQAVIDAGLVGPLVNLLQNA---EFDI 309 (454)
Q Consensus 251 ~l~~L~~~L~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v 309 (454)
+++.+...+. +. ++..|..|..+++.++.+. .. ....++. ..++..+.+. ++.+
T Consensus 400 ~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 400 FLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHH
T ss_pred HHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCcee
Confidence 3445555554 44 6788999999999997531 10 1112111 1223334555 8899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 310 KKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 310 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
|..|+|+++.++..-.++... .+++.++..+.++++.|+..|+.+|.+++..
T Consensus 475 r~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 999999999998865443322 2677888888888899999999999999874
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.48 E-value=3.6e-05 Score=71.10 Aligned_cols=295 Identities=17% Similarity=0.147 Sum_probs=174.9
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHH--HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC-
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVP--RFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG- 82 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~--~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g- 82 (454)
..+|+-.+..|...+..+++.. ....+.. ...+. -++..|......+.+..++.+|..+.. .++.|..+.+.+
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~-~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~ 210 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNG-LHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEK 210 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTT-TCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHH
T ss_pred cccchHHHHHHHHHHHHHhccC-CccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHccc
Confidence 4555666667766666665443 2221111 11233 455566654325667788999999998 788888887653
Q ss_pred -ChHHHHHhhC----C-------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh--HHHHHHhchhhhhhHH
Q 012897 83 -AVPIFVKLLA----S-------------PSDDVREQAVWALGNVAGDSPRCRDLVLSQGAL--IPLLAQLNERAKLSML 142 (454)
Q Consensus 83 -~i~~L~~lL~----~-------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~~~ 142 (454)
.++.++..+. + ....++-+++.+++-++... ...+.+...+.. ..++..+.....+.+.
T Consensus 211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvv 289 (480)
T 1ho8_A 211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVS 289 (480)
T ss_dssp HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence 3566654332 1 13667888999999997544 455555555432 5666777667789999
Q ss_pred HHHHHHHHhhcCCCCCCCh------hhhhchHHHHHHhhcC---CChhHHHHHHHHHHHhc---cC---ChHHHHHHHHh
Q 012897 143 RNATWTLSNFCRGKPQPPF------DQVRPALPALAQLVHS---NDEEVLTDACWALSYLS---DG---TNDKIQAVIEA 207 (454)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~------~~~~~~l~~l~~ll~~---~~~~v~~~a~~~L~~l~---~~---~~~~~~~~~~~ 207 (454)
+-++.++.|+....+.... .....+++ ++..|.. .|+++....-.....+. .. .++....+. .
T Consensus 290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~-s 367 (480)
T 1ho8_A 290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD-S 367 (480)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-c
Confidence 9999999999986532111 11133433 4444432 35555443322222111 10 011111111 1
Q ss_pred CcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC---------CcchhHHHHHHHHHHHH
Q 012897 208 GVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH---------SHKKSIKKEACWTISNI 278 (454)
Q Consensus 208 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---------~~~~~v~~~a~~~L~nl 278 (454)
| .|.- +|..+....| -.|.....+.. ..+++.|.++|++ +.++.+..-||.-++.+
T Consensus 368 G-------~L~W-SP~H~se~FW-~ENa~kf~e~~------~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef 432 (480)
T 1ho8_A 368 K-------LLCW-SPPHVDNGFW-SDNIDEFKKDN------YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV 432 (480)
T ss_dssp T-------CCCC-CGGGGCHHHH-HHHSGGGSSGG------GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred C-------Cccc-CCCccchhHH-HHHHHHHHhcc------hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence 1 1211 1222222222 12222222211 2457789999974 23678889999999999
Q ss_pred hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
+...|..+..+-+.|+-..+++++.+++++||.+|+.|+..+..
T Consensus 433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99878877767678999999999999999999999999988754
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.46 E-value=1.1e-05 Score=82.23 Aligned_cols=287 Identities=14% Similarity=0.167 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCChHH
Q 012897 10 SSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT---SENTKVVIDHGAVPI 86 (454)
Q Consensus 10 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~ 86 (454)
..-+..|+..+..+..+..... .+..+++..+.+.+.+.. .. +.|+.++..++... +..-..++ +.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~ 99 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPA 99 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHH
T ss_pred hhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHH
Confidence 4445667777777766431111 111256778888888776 33 89999999999532 22223333 67899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhh
Q 012897 87 FVKLLASPSDDVREQAVWALGNVAGD-SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVR 165 (454)
Q Consensus 87 L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 165 (454)
++..+.+....+|..|-.++..++.. ++..... .++.++..+.....-..+..|+.++..|+...+..-.....
T Consensus 100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA-----LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999888889999888887777643 3322222 47888888854446788999999999999765333333457
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHhccCChH-HHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchh
Q 012897 166 PALPALAQLVHSNDEEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQ 244 (454)
Q Consensus 166 ~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 244 (454)
.++|.+...+.+..+++...+..++..+|..-.. -+. ..+|.|+..+.+++. ...++..|+.-+.-......
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~ 247 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPA 247 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecch
Confidence 8899999999999999999999998888742111 111 578899999987743 44445555444322211111
Q ss_pred hhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc--CCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHh
Q 012897 245 CIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA--GNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNA 320 (454)
Q Consensus 245 ~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l 320 (454)
. + .-.+|.|..-|... ...+++.++-++.|+|. .++.....++ ...+|.+....+. .+|++|..+..|+..+
T Consensus 248 ~-l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 248 T-L-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp H-H-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred h-H-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 0 0 12346666667766 77888999999999998 6777777776 5678888877765 4899998888888777
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.45 E-value=3.8e-05 Score=78.28 Aligned_cols=304 Identities=16% Similarity=0.158 Sum_probs=204.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---PRCR 117 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~ 117 (454)
+..+++.+...+ ..-+..++..+.++........ ....+++..+.+.+.+.... +.|+.++..+|... +...
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 333555565544 4445677777777765331111 11125778888888764333 88999999998433 2222
Q ss_pred HHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC-ChhHHHHHHHHHHHhccC
Q 012897 118 DLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN-DEEVLTDACWALSYLSDG 196 (454)
Q Consensus 118 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~v~~~a~~~L~~l~~~ 196 (454)
..++ +.++.++..+ .+....|+..|-.++..+...- .......++|.++..+.+. ....+..++.++..++..
T Consensus 91 ~~~~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 91 PYIV--QLVPAICTNA-GNKDKEIQSVASETLISIVNAV---NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHH--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHS---CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred cchH--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 2332 4678888887 5666789998888888887653 2223377899999988765 689999999999999976
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
.+.+...-+ .+++|.+...+.+..+++..+|..++..+|..-. +.. -...++.|++.+.++ +. ..++...|+
T Consensus 165 ~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d---~~~~~~~~~~~~~~p-~~--~~~~~~~l~ 236 (986)
T 2iw3_A 165 AKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKD---IERFIPSLIQCIADP-TE--VPETVHLLG 236 (986)
T ss_dssp SHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTT---TGGGHHHHHHHHHCT-TH--HHHHHHHHT
T ss_pred hHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccc---hhhhHHHHHHHhcCh-hh--hHHHHHHhh
Confidence 665544333 3789999999999999999999999998886322 111 015688999999877 33 233333333
Q ss_pred HHhc--C-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCC-CHHHHHHHHHcCCcHHHhhccC-CCCHH
Q 012897 277 NITA--G-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGG-THEQIKYLVREGCIKPLCDLFV-CPDPR 351 (454)
Q Consensus 277 nl~~--~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~i~~L~~~l~-~~~~~ 351 (454)
.-+. . ..... .-++|.|.+-|......+++.++..+.||+.-- ++.....+ -..+++.|....+ ..+|+
T Consensus 237 ~~tfv~~v~~~~l-----~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 237 ATTFVAEVTPATL-----SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp TCCCCSCCCHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHH
T ss_pred cCeeEeeecchhH-----HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHH
Confidence 2221 1 11111 124677778888888899999999999998854 34333332 3457777777665 47899
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 012897 352 IVTVCLEGLENILKVGEA 369 (454)
Q Consensus 352 v~~~al~~L~~l~~~~~~ 369 (454)
+|..+-.++..+.+.+..
T Consensus 311 ~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999888776554
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.41 E-value=2.4e-05 Score=82.13 Aligned_cols=329 Identities=11% Similarity=0.009 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHhcc-CCCCcHHHHHHcCCHHHHHHhhc----------------CCCChhHHHHHHHHHHHhcCCCc-
Q 012897 11 SLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVEFLM----------------REDYPQLQFEAAWALTNIASGTS- 72 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~l~~L~~lL~----------------~~~~~~v~~~a~~~L~~l~~~~~- 72 (454)
.++..+++++...+.. . .+.. .....++.+.. |. +++ ++++..|+.++..+....+
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6788888888877662 1 1111 23445666665 41 134 7899999999999987322
Q ss_pred hhhHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChhh-H-----------HHHHhcCChHHHH
Q 012897 73 ENTKVVIDHGAVPIFVK-------LLASPS---DDVREQAVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL 130 (454)
Q Consensus 73 ~~~~~~~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~~l~~~~~~~-~-----------~~~~~~~~i~~l~ 130 (454)
..+...+. .+++.++. .+...+ ++.....++.+..++...... . ..+ ...++.++
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll 354 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEIL 354 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHH
Confidence 11111111 12333332 223344 367767777777766332211 1 111 01233444
Q ss_pred HHhch----hhhhhHHHHHHHHHHhhcCCC--------CCCCh----hhhhchHHHHHHhhcCCCh--------------
Q 012897 131 AQLNE----RAKLSMLRNATWTLSNFCRGK--------PQPPF----DQVRPALPALAQLVHSNDE-------------- 180 (454)
Q Consensus 131 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~l~~ll~~~~~-------------- 180 (454)
..... ..++++...+++.+..++... ..... .....+++.++..+..+++
T Consensus 355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 43311 246788889998887776511 01111 1223444555544432211
Q ss_pred -hHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhcCC-----CCCcchhhHHHHHhHhhccCccchhhhhccCChH
Q 012897 181 -EVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLGH-----PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALP 253 (454)
Q Consensus 181 -~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 253 (454)
..|..+..++..++.... .... .+++.+...+.. .++..++.++.+++.++.+...... ..++
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~~~l~-----~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~ 504 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLNDYILE-----ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP 504 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHH-----HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence 245666667766665433 1112 122223333322 6788899999999999886553221 2333
Q ss_pred HHHHhh---c--CCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHH
Q 012897 254 YLLGLL---T--HSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 328 (454)
Q Consensus 254 ~L~~~L---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 328 (454)
.++.++ . +. ++.+|..++|+++.++..-....+.+ ..+++.++..+ + +.|+..|++++.+++.......
T Consensus 505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence 333332 2 34 78999999999999885211111111 13566666666 2 8899999999999997554433
Q ss_pred HHHHHHcCCcHHHhhccCC--CCHHHHHHHHHHHHHHHHh
Q 012897 329 IKYLVREGCIKPLCDLFVC--PDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 329 ~~~l~~~~~i~~L~~~l~~--~~~~v~~~al~~L~~l~~~ 366 (454)
..++ ..++..+..++.. -+.+.+..++.++..++..
T Consensus 579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 3332 2467777777776 3578888999999999864
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.38 E-value=2.9e-05 Score=81.56 Aligned_cols=397 Identities=11% Similarity=0.073 Sum_probs=207.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEF-------LMREDY--PQLQFEAAWALTNIASGTSENT--- 75 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 75 (454)
++++++..|+.++..++...........+. .+++.++.+ +...+. ++.....++.+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999997631111111111 123333332 233331 2666667777776664222111
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChhhHHHHHh--cCChHHHH
Q 012897 76 ---------KVVIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD---------SPRCRDLVLS--QGALIPLL 130 (454)
Q Consensus 76 ---------~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~ 130 (454)
..+ ..+++.++.+... .++++...+++.+..++.. .+........ ...++.++
T Consensus 335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 1456666666533 4788899999888777531 1111111110 12344444
Q ss_pred HHhchhhh--------------hhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC-----CChhHHHHHHHHHH
Q 012897 131 AQLNERAK--------------LSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS-----NDEEVLTDACWALS 191 (454)
Q Consensus 131 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~v~~~a~~~L~ 191 (454)
..+....+ ...|..+..++..++...+ ......+++.+...+.+ .+...++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355667777777775422 23333444455555543 57788999999999
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcC-CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHH
Q 012897 192 YLSDGTNDKIQAVIEAGVCPRLVELLG-HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKE 270 (454)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~ 270 (454)
.++..........+. .+++.+..+.. ++++.+|..++++++.++..-....+ .+ ..+++.++..|. +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHhC----hHHHHH
Confidence 998765433221111 23332222221 34788999999999999863221111 11 134566666662 578999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhHHHHHHHHHHhcCCCC-HHHHHHHHH--cCCcHHHhhcc
Q 012897 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIKKEAAWAISNATSGGT-HEQIKYLVR--EGCIKPLCDLF 345 (454)
Q Consensus 271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~i~~L~~~l 345 (454)
|++++.+++..........+ ..++..+..++..+ +...+..+..+++.++...+ .+...++.. ..++..+...+
T Consensus 563 A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 641 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC 641 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975555544444 34677777777763 57888899999999876432 233333322 12333333444
Q ss_pred CCC--CHHH---HHHHHHHHHHHHHhhhhhhhccCCc-ccccHHHHHHHHhccHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 012897 346 VCP--DPRI---VTVCLEGLENILKVGEAEKNMGTAT-ADVNQYAQLVEEAEGLEKIENLQS--HDNNEIYEKAVKILET 417 (454)
Q Consensus 346 ~~~--~~~v---~~~al~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~ 417 (454)
+.. +++- ...++..|..++..-.........+ ...+.+...+ ...++.+..+.. ..++++.+.+..++..
T Consensus 642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 433 3322 2334555555554322100000000 0001112222 345566665543 2467888888888877
Q ss_pred hcC
Q 012897 418 YWL 420 (454)
Q Consensus 418 ~~~ 420 (454)
+..
T Consensus 720 ~~~ 722 (971)
T 2x1g_F 720 AIT 722 (971)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.18 E-value=2e-05 Score=69.12 Aligned_cols=188 Identities=11% Similarity=0.081 Sum_probs=139.6
Q ss_pred HHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHH-h
Q 012897 213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVI-D 291 (454)
Q Consensus 213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~ 291 (454)
++..|.+.+.+.+..++.-|..+..........++..+++..|+.+.... +..++..++.++.++... ......++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence 33444456667788888888885555566788899999999999999998 999999999999999875 44454555 4
Q ss_pred CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHH--------c--CCcHHHhhccC---CCCHHHHHHHHH
Q 012897 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVR--------E--GCIKPLCDLFV---CPDPRIVTVCLE 358 (454)
Q Consensus 292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~--~~i~~L~~~l~---~~~~~v~~~al~ 358 (454)
..+|..+..++.+.+..|.+.|+..|..++...+. ....+.+ . .....|+..++ ..|.+++..++.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 56788899999988899999999999999876521 1111111 1 23778899997 788999999999
Q ss_pred HHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCC--CHHHHHH
Q 012897 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHD--NNEIYEK 410 (454)
Q Consensus 359 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~ 410 (454)
.+..++...+... ....+...+.+.|.-..+.+.+... ++++++.
T Consensus 280 LIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 9999988765332 1234677788888777788866555 6666544
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.16 E-value=0.00023 Score=74.25 Aligned_cols=338 Identities=10% Similarity=0.081 Sum_probs=183.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCC---c--hhhHHHHh
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFV-EFLMREDYPQLQFEAAWALTNIASGT---S--ENTKVVID 80 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~ 80 (454)
+.++++...+++++...++- -....+++.++++.+. .++. + +.++..|+.||..+.... + .....+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 35667777888888887753 2356677888999999 8875 4 789999999999998722 2 11111110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHHhchhh
Q 012897 81 --HGAVPIF--------------VKLLASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERA 137 (454)
Q Consensus 81 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~ 137 (454)
.+.++.+ ...-...+.+.....++.+..+.. ..+..+..+. .++..++... ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111122345666666666655432 1122122211 1123344433 445
Q ss_pred hhhHHHHHHHHHHhhcCCC--CCCChhhhh----chHHHHHHhhcCCC--------------------hh-HH----HHH
Q 012897 138 KLSMLRNATWTLSNFCRGK--PQPPFDQVR----PALPALAQLVHSND--------------------EE-VL----TDA 186 (454)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~----~~l~~l~~ll~~~~--------------------~~-v~----~~a 186 (454)
+.++...++..-..+..+- ......... .+++.++.-+.-+. ++ .. +.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 6677677666555554421 111222223 34444444433221 01 11 122
Q ss_pred HHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC---
Q 012897 187 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH--- 261 (454)
Q Consensus 187 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~--- 261 (454)
+..+.++.. ++... -+++.+...+.. .++..+++++++++.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 222222211 11111 123333344443 568889999999999997655332222223567778887753
Q ss_pred --CcchhHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHH------
Q 012897 262 --SHKKSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIK------ 330 (454)
Q Consensus 262 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------ 330 (454)
+ ...++..++|+++.++. .+++.. ..++..|++.+..+++.++..|++++.+++..+......
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L-----~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3 44567788999998875 233332 235666777777778899999999999998854322210
Q ss_pred --HHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 331 --YLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 331 --~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
++. .++..+......-+++-+..+..++..++....
T Consensus 584 ~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123344444444566666778888888877644
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.15 E-value=0.00012 Score=76.81 Aligned_cols=331 Identities=11% Similarity=0.056 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc--hhhHHH---Hh--CCC
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS--ENTKVV---ID--HGA 83 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~---~~--~g~ 83 (454)
.++..+++++....... .... ....+++.+.+.+. + ++++..|+.++..+..... .....+ +. .+.
T Consensus 217 ~~~~~~l~~l~~wi~~~-~~~~---~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~ 289 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLE-VPLQ---DCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGL 289 (963)
T ss_dssp HHHHHHHHHHHHHHTSS-CCGG---GTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-CCcc---cchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhh
Confidence 46667777776655422 1111 11334666777773 4 6889999999999987321 111111 11 011
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----h----cCChHHHHHHhch----hhhhhHHHHHHHHHHh
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL----S----QGALIPLLAQLNE----RAKLSMLRNATWTLSN 151 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~----~~~i~~l~~~l~~----~~~~~~~~~a~~~L~~ 151 (454)
.+.+...+...+.......+..+..+....+ ..+. . ...++.++..... ..++++...++..+..
T Consensus 290 ~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 290 QEQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 2222223334455555666666666553211 1111 0 0123444444322 1344555555555555
Q ss_pred hcCCCCCC-------Ch----hhhhchHHHHHHhhcCCCh---------------hHHHHHHHHHHHhccCChHHHHHHH
Q 012897 152 FCRGKPQP-------PF----DQVRPALPALAQLVHSNDE---------------EVLTDACWALSYLSDGTNDKIQAVI 205 (454)
Q Consensus 152 l~~~~~~~-------~~----~~~~~~l~~l~~ll~~~~~---------------~v~~~a~~~L~~l~~~~~~~~~~~~ 205 (454)
++...... .. .....+++.++..+..+++ ..+..+..+|..++...... +.
T Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l 443 (963)
T 2x19_B 367 LQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL 443 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH
Confidence 54421000 00 1123344444444432221 11334444444444221110 11
Q ss_pred HhCcHHHHHHhc----CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhh---cCCcchhHHHHHHHHHHHH
Q 012897 206 EAGVCPRLVELL----GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLL---THSHKKSIKKEACWTISNI 278 (454)
Q Consensus 206 ~~~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L---~~~~~~~v~~~a~~~L~nl 278 (454)
. -+++.+...+ .+.++..++.++++++.++.+..... ...++.++..+ ..+ ++.+|..++|+++.+
T Consensus 444 ~-~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~ 516 (963)
T 2x19_B 444 S-NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGAL 516 (963)
T ss_dssp H-HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHH
Confidence 1 1223333344 45677889999999999998654322 12334444433 334 678999999999998
Q ss_pred hcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC--CCHHHHHHH
Q 012897 279 TAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC--PDPRIVTVC 356 (454)
Q Consensus 279 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~--~~~~v~~~a 356 (454)
+..-.... ..+ ..+++.++..+.+ +.|+..|++++.+++........+++ ..++..|..++.. -+.+.+..+
T Consensus 517 ~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 517 SEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHH
Confidence 85211111 223 4688999988854 89999999999999864322211221 1244555555554 356788889
Q ss_pred HHHHHHHHHhh
Q 012897 357 LEGLENILKVG 367 (454)
Q Consensus 357 l~~L~~l~~~~ 367 (454)
+.++..++...
T Consensus 591 ~eai~~i~~~~ 601 (963)
T 2x19_B 591 MQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999998643
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.15 E-value=0.00069 Score=70.65 Aligned_cols=311 Identities=10% Similarity=0.112 Sum_probs=178.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---h-
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDS---P- 114 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~- 114 (454)
+++.+..+|.++.++.+...++.++.....- -....+.+.+.++.++ .++. +++++..|+.+|..+.+.. +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 4445556665554478888999999998862 2245677788999999 8884 6789999999999998632 2
Q ss_pred -hhHHHHHhc--CChHHH-----------HHHhc--hhhhhhHHHHHHHHHHhhcCCCC-----CCC-hhhhhchHHHHH
Q 012897 115 -RCRDLVLSQ--GALIPL-----------LAQLN--ERAKLSMLRNATWTLSNFCRGKP-----QPP-FDQVRPALPALA 172 (454)
Q Consensus 115 -~~~~~~~~~--~~i~~l-----------~~~l~--~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~l~ 172 (454)
.....+... +.+..+ ...+. ...+.+.....+..+..+..... ... ......++..++
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 122111110 001111 11111 22356666666666655543321 001 111223344566
Q ss_pred HhhcCCChhHHHHHHHHHHHhccC---C---hHHHHHHHHhCcHHHHHHhcCCCCC---------cc-h--------hhH
Q 012897 173 QLVHSNDEEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLGHPSP---------SV-L--------IPA 228 (454)
Q Consensus 173 ~ll~~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~~~i~~L~~ll~~~~~---------~v-~--------~~a 228 (454)
.+-..++.++...++..-..++.. . ......++. .+++.++..+..+.. ++ + ...
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 665667888877777766666531 0 111121222 456666666655431 11 0 000
Q ss_pred H----HHHhHhhccCccchhhhhccCChHHHHHh----hcC-CcchhHHHHHHHHHHHHhcCC-HHHHHHHHhCCChHHH
Q 012897 229 L----RTVGNIVTGDDFQTQCIITYGALPYLLGL----LTH-SHKKSIKKEACWTISNITAGN-RDQIQAVIDAGLVGPL 298 (454)
Q Consensus 229 ~----~~L~~l~~~~~~~~~~~~~~~~l~~L~~~----L~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L 298 (454)
. .+|..++. +.....++.+++. +.+ ..++..++.++|+++.++.+. ++....++ ..+++.|
T Consensus 430 f~~~Rd~L~~l~~--------l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~L 500 (1023)
T 4hat_C 430 YKSEREVLVYLTH--------LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDL 500 (1023)
T ss_dssp HHHHHHHHHHHHH--------HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHH
Confidence 1 22222221 1111233333433 333 127899999999999999753 33233343 3478888
Q ss_pred HHHhhh-----cchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 299 VNLLQN-----AEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 299 ~~ll~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
+.++.. ....++..++|+++..+..- .++..+ .++..|...+..+++.++..|++++.++...+..
T Consensus 501 l~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 501 LDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888864 34556778889998876532 222222 2577788888888899999999999999987654
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.13 E-value=0.00047 Score=72.36 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=188.4
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 012897 49 MREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 125 (454)
Q Consensus 49 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 125 (454)
.+.+ ...++.++++++.++.+-.+.. ...++.++..+ .++++.++..++++++.++..-..... . -...
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence 4445 7889999999999997433211 23344444443 335788999999999998743221111 2 2356
Q ss_pred hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 012897 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLSDGTN-DKIQ 202 (454)
Q Consensus 126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~~~~ 202 (454)
++.++..+ .+ +.++..|++++.+++......-......+++.+..++... +...+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78888887 33 7899999999999997543222234456677777777753 56788889999999876543 3333
Q ss_pred HHHHhCcHHHHHHhc----CCC-CCcchh---hHHHHHhHhhccCccc-------------------hhhh--hccCChH
Q 012897 203 AVIEAGVCPRLVELL----GHP-SPSVLI---PALRTVGNIVTGDDFQ-------------------TQCI--ITYGALP 253 (454)
Q Consensus 203 ~~~~~~~i~~L~~ll----~~~-~~~v~~---~a~~~L~~l~~~~~~~-------------------~~~~--~~~~~l~ 253 (454)
..++ .+++.+...+ ..+ +++.+. ..+.+|+.+...-... ...+ +...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3333 3444444433 222 333333 3455555554321100 0001 1223455
Q ss_pred HHHHhhcCC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHh----hh-cchhhHHHHHHHHHHhcC--CCC
Q 012897 254 YLLGLLTHS-HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLL----QN-AEFDIKKEAAWAISNATS--GGT 325 (454)
Q Consensus 254 ~L~~~L~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~-~~~~v~~~a~~aL~~l~~--~~~ 325 (454)
.+..++... .+..+.+.++.++..++....+.. ...++.++..+ .. +.+ ..++.+..++. ...
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence 555555321 156788889988888764211111 12244444332 22 122 23333444333 211
Q ss_pred H---HHHHHHHHcCCcHHHhhccC---CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccH-HHHHHHHhccHHHHHH
Q 012897 326 H---EQIKYLVREGCIKPLCDLFV---CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQ-YAQLVEEAEGLEKIEN 398 (454)
Q Consensus 326 ~---~~~~~l~~~~~i~~L~~~l~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~ 398 (454)
. +....+.+ .++..+..++. ..+|+++......+..+++.....-- .... +... ++.+..
T Consensus 758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~i------~~~~~~ 824 (963)
T 2x19_B 758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKAV------FQCAVL 824 (963)
T ss_dssp TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHHH------HHHHHH
T ss_pred cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHHH------HHHHHH
Confidence 1 11211111 12333333333 24699999999999999987654321 0010 2222 233444
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCc
Q 012897 399 LQSHDNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 399 l~~~~~~~v~~~a~~~l~~~~~~ 421 (454)
.+.+++..+...+...+..++..
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHhc
Confidence 56788999999999999988764
No 94
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.05 E-value=8.1e-05 Score=65.32 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=134.6
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhh
Q 012897 168 LPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCII 247 (454)
Q Consensus 168 l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 247 (454)
...++.-|.+.+.+.+..++.-|..+...+......++..+++..|+......+...+..++.++.++..+....-..+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34566667778888899999999986656667788899999999999999998889999999999999875332222222
Q ss_pred ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh----------CCChHHHHHHhh---hcchhhHHHHH
Q 012897 248 TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID----------AGLVGPLVNLLQ---NAEFDIKKEAA 314 (454)
Q Consensus 248 ~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~i~~L~~ll~---~~~~~v~~~a~ 314 (454)
...++..+..++.+. ...|.+.|...|..++..++.....+.+ ...++.|+.+++ ..+.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 557889999999977 8999999999999988754322222111 224889999997 56899999999
Q ss_pred HHHHHhcCCCC-HH----HHHHHHHcCCcHHHhhccCCC--CHHHHHH
Q 012897 315 WAISNATSGGT-HE----QIKYLVREGCIKPLCDLFVCP--DPRIVTV 355 (454)
Q Consensus 315 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~~l~~~--~~~v~~~ 355 (454)
..|..+....+ .+ ....+.+.|.-..+...++.. +++++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88877776644 23 122333345444555556654 5666544
No 95
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.04 E-value=0.0028 Score=67.05 Aligned_cols=312 Identities=10% Similarity=0.088 Sum_probs=172.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh--
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--PR-- 115 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~-- 115 (454)
++.+..++.+..++.++..++.++.+...-.+ ...+.+..+++.++. ++ .+++++..++.+|..+.... +.
T Consensus 196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~ 271 (1049)
T 3m1i_C 196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND 271 (1049)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence 44445556554447899999999988776222 233555677777773 44 37899999999999988442 21
Q ss_pred -hHHHHHhcCChHHHHHHhc-----------------hhhhhhHHHHHHHHHHhhcCCC------CCCChhhhhchHHHH
Q 012897 116 -CRDLVLSQGALIPLLAQLN-----------------ERAKLSMLRNATWTLSNFCRGK------PQPPFDQVRPALPAL 171 (454)
Q Consensus 116 -~~~~~~~~~~i~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~l 171 (454)
....+.. .++.++..+. .+.+.+.....+..+..+.... +.........+++.+
T Consensus 272 ~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 349 (1049)
T 3m1i_C 272 LIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1049)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence 1111111 1112222110 1224444445555444332210 111122335567777
Q ss_pred HHhhcCCChhHHHHHHHHHHHhcc----C--ChHHHHHHHHhCcHHHHHHhcCCCCC----------------------c
Q 012897 172 AQLVHSNDEEVLTDACWALSYLSD----G--TNDKIQAVIEAGVCPRLVELLGHPSP----------------------S 223 (454)
Q Consensus 172 ~~ll~~~~~~v~~~a~~~L~~l~~----~--~~~~~~~~~~~~~i~~L~~ll~~~~~----------------------~ 223 (454)
+.+...++.++...++..+..++. . .......++. .+++.++..+..++. .
T Consensus 350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~ 428 (1049)
T 3m1i_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ 428 (1049)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence 777777888888888888877765 1 1112222222 455566666543211 0
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHHHHHHHHHHhcCCHHH-HHHHHhCCChHHHHHH
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKEACWTISNITAGNRDQ-IQAVIDAGLVGPLVNL 301 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~l 301 (454)
.+..+..+|..++...+.. ++ .-+.+.+-..+.. ..++..++.++++++.++...... ...++ ..+++.+..+
T Consensus 429 ~~~~~~~~L~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l 503 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHH
Confidence 1223455555555322111 11 0122333444432 227788999999999998643222 11211 2245555554
Q ss_pred hh-----hcchhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 302 LQ-----NAEFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 302 l~-----~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
.. .+.+.++..++|+++.++..- .++. +. .+++.|+..+.++++.|+..|+.++.++++.+..
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~---l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF---LR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH---HH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH---HH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 234556667999999776421 2222 22 2677888888888999999999999999986543
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.90 E-value=0.0018 Score=68.43 Aligned_cols=341 Identities=10% Similarity=0.094 Sum_probs=180.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh--
Q 012897 8 DDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT-SEN----TKVVID-- 80 (454)
Q Consensus 8 ~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~-- 80 (454)
.++.++..+++++...+.-- + ...+.+..+++.+.+.+. .+ ++++..|+.+|..+.... +.. ...+..
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~ 281 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFM-TS-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence 45778888888888876542 2 333555677777774332 25 899999999999998632 111 111110
Q ss_pred CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHHhchhhhh
Q 012897 81 HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSPRCRDLVLSQGALIPLLAQLNERAKL 139 (454)
Q Consensus 81 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 139 (454)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ...++.++... ..++.
T Consensus 282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~ 358 (1049)
T 3m1i_C 282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER 358 (1049)
T ss_dssp HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence 122222221 11 12234444455555544331 111111111 12344455444 34567
Q ss_pred hHHHHHHHHHHhhcC----CCCCC--ChhhhhchHHHHHHhhcCC-------------------Ch---hHHHHHHHHHH
Q 012897 140 SMLRNATWTLSNFCR----GKPQP--PFDQVRPALPALAQLVHSN-------------------DE---EVLTDACWALS 191 (454)
Q Consensus 140 ~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~l~~l~~ll~~~-------------------~~---~v~~~a~~~L~ 191 (454)
++...++..+..++. .+... .......+++.++..+.-+ +. ..+..+..+|.
T Consensus 359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence 788888877777766 32111 1123344555555544221 00 12334555666
Q ss_pred HhccCChHHHHHHHHhCcHHHHHHhcC--CCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC----Ccch
Q 012897 192 YLSDGTNDKIQAVIEAGVCPRLVELLG--HPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH----SHKK 265 (454)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~----~~~~ 265 (454)
.++...+.. ++. -+.+.+-..+. ..++..++.++++++.++.........-.-..+++.+..+... ...+
T Consensus 439 ~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~ 514 (1049)
T 3m1i_C 439 YLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKA 514 (1049)
T ss_dssp HHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHH
T ss_pred HHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchH
Confidence 655332221 111 22334444444 3567789999999999986543221111112344445443322 1145
Q ss_pred hHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHH--------HHHHH
Q 012897 266 SIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI--------KYLVR 334 (454)
Q Consensus 266 ~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~ 334 (454)
.++..++|+++.++. ..++.. ..+++.++..+.+.++.|+..|++++.+++........ .++
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l-----~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~-- 587 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-- 587 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--
Confidence 566679999998775 222222 23577788888888899999999999999885433221 111
Q ss_pred cCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Q 012897 335 EGCIKPLCDLFVCPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 335 ~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~ 367 (454)
..++..+..++..-+.+-.....+++..++...
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 123444445555545555556667777776543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.77 E-value=0.00018 Score=74.82 Aligned_cols=311 Identities=10% Similarity=0.004 Sum_probs=170.2
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHHHHhc
Q 012897 46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--PRCRDLVLSQ 123 (454)
Q Consensus 46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~ 123 (454)
....+.+ +.++..++.++.....- -....+++.++++.+..+|.. ++++..|+.+|..+.... +..+..++..
T Consensus 200 ~~~~~~~-~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~ 274 (980)
T 3ibv_A 200 AYSNAKN-YGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI 274 (980)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCC-HHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 3333356 88999999999999872 233556667788888888865 899999999999988433 2222222221
Q ss_pred CChHHHHHHhch-hhhhhHHHHHHHHHHhhc------CCCCC-CC-------hhhhhchHHHHHHhhcCCChhHHHHHHH
Q 012897 124 GALIPLLAQLNE-RAKLSMLRNATWTLSNFC------RGKPQ-PP-------FDQVRPALPALAQLVHSNDEEVLTDACW 188 (454)
Q Consensus 124 ~~i~~l~~~l~~-~~~~~~~~~a~~~L~~l~------~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~v~~~a~~ 188 (454)
=.+...+..+.. ..|.++.+..+..+..+. ...+. .. .....++++.++.++.+++.++...++.
T Consensus 275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~ 354 (980)
T 3ibv_A 275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFP 354 (980)
T ss_dssp HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHH
T ss_pred HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 001111111111 345555544443332221 11110 11 1344678999999999999888877777
Q ss_pred HHHHhccC-----C----hHHHHHHHHhCcHHHHHHhcCCCCC----------------cchhhHHHHHhHhhc-cCccc
Q 012897 189 ALSYLSDG-----T----NDKIQAVIEAGVCPRLVELLGHPSP----------------SVLIPALRTVGNIVT-GDDFQ 242 (454)
Q Consensus 189 ~L~~l~~~-----~----~~~~~~~~~~~~i~~L~~ll~~~~~----------------~v~~~a~~~L~~l~~-~~~~~ 242 (454)
.+..+... . ......++. .+++.++..+..++. +.|+... .+-..+. -.+..
T Consensus 355 Fw~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~ 432 (980)
T 3ibv_A 355 FLSDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL 432 (980)
T ss_dssp HHHHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence 76655421 0 112222222 455556666654321 1233322 2222211 11111
Q ss_pred hhhhhccCChHHHHHhhc---CCcchhHHHHHHHHHHHHhcCCHHHHHHHH-hC----CChHHHHHHhh-----hcchhh
Q 012897 243 TQCIITYGALPYLLGLLT---HSHKKSIKKEACWTISNITAGNRDQIQAVI-DA----GLVGPLVNLLQ-----NAEFDI 309 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~----~~i~~L~~ll~-----~~~~~v 309 (454)
.-..+-.-+.+.+...+. +. ++..++.++.+++.++.+......... .. .+++.+..+++ ..++.|
T Consensus 433 ~l~~~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V 511 (980)
T 3ibv_A 433 FSSYMYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV 511 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence 000000011122223332 23 678889999999999875322110000 01 13455555555 468899
Q ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHcCCcHHHhh--ccCCCCHHHHHHHHHHHHHHHHhhhh
Q 012897 310 KKEAAWAISNATSGGT--HEQIKYLVREGCIKPLCD--LFVCPDPRIVTVCLEGLENILKVGEA 369 (454)
Q Consensus 310 ~~~a~~aL~~l~~~~~--~~~~~~l~~~~~i~~L~~--~l~~~~~~v~~~al~~L~~l~~~~~~ 369 (454)
+..++++++..+..-. ++... .+++.++. .+.++++.++.+|..++.++++.+..
T Consensus 512 ~~~~~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 512 QLLYMEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 9999999999876421 12111 14556666 66678889999999999999987664
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.67 E-value=0.00092 Score=62.46 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=159.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCChHHHHHhh--CC-----C---CHHHHHHHHHHHH
Q 012897 40 VVPRFVEFLMREDYPQLQFEAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLL--AS-----P---SDDVREQAVWALG 107 (454)
Q Consensus 40 ~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~-----~---~~~v~~~a~~~L~ 107 (454)
+...|+.-|-++. .++|.-|+.+|+.+...... .+....+..+.-.++..+ +. . -..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4567777788888 79999999999998762211 111001113333333333 21 1 2679999999999
Q ss_pred HhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHH
Q 012897 108 NVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDAC 187 (454)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~ 187 (454)
.+ ..-+.. ..++..++..+ ....-+++..++..|.++ .+-- .. ..++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL-~~---Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFV-ED---KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGC-CC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHH-HH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 554432 23344444433 455678999999999999 2211 11 578899999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcch
Q 012897 188 WALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKK 265 (454)
Q Consensus 188 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~ 265 (454)
.+|.-++ .+.... .++..+...|.+-+ ..-....+..|+.++..+.. .......+|.|.+++.++ -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence 9999998 232333 34455666665432 22344567778888776542 122347899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897 266 SIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318 (454)
Q Consensus 266 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 318 (454)
.||..+..++..+. .....+. ....++-+++++++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRL--------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFL--------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998776 2222111 1233455567778777777664
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.66 E-value=0.00017 Score=74.96 Aligned_cols=304 Identities=10% Similarity=0.016 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCh
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGT--SENTKVVIDHGAV 84 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 84 (454)
+.++.++..++.++...+.- -....++..+.++.+.++|.. ++++..|+.+|..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46778888899999888864 345666777889999988864 789999999999998733 2222222221011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hhHHH--HHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897 85 PIFVKLLA--SPSDDVREQAVWALGNVAG------DSP-----RCRDL--VLSQGALIPLLAQLNERAKLSMLRNATWTL 149 (454)
Q Consensus 85 ~~L~~lL~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 149 (454)
...+..+. ..+.++.+..++.+..++. ..+ +.+.. -.-.+.++.++.++ .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122222 3566776655555543321 111 11111 11123677777777 445556666665555
Q ss_pred HhhcCC----CC-CCChh----hhhchHHHHHHhhcCC-----Ch-----------hHHHHHHHHHHHh-ccCChHHHHH
Q 012897 150 SNFCRG----KP-QPPFD----QVRPALPALAQLVHSN-----DE-----------EVLTDACWALSYL-SDGTNDKIQA 203 (454)
Q Consensus 150 ~~l~~~----~~-~~~~~----~~~~~l~~l~~ll~~~-----~~-----------~v~~~a~~~L~~l-~~~~~~~~~~ 203 (454)
..+... .. ..... ....+++.++.-+.-+ +. +.|.... .+... +.-.+...-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence 554422 11 01112 2233444444433321 11 2344333 33222 2222221111
Q ss_pred HHHhCcHHHHHHhcC---CCCCcchhhHHHHHhHhhccCccchhhh-hcc----CChHHHHHhhc-----CCcchhHHHH
Q 012897 204 VIEAGVCPRLVELLG---HPSPSVLIPALRTVGNIVTGDDFQTQCI-ITY----GALPYLLGLLT-----HSHKKSIKKE 270 (454)
Q Consensus 204 ~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~~L~-----~~~~~~v~~~ 270 (454)
..-.-+.+.+...+. +.++..++.++.+|+.++.+........ -.. .+++.+..++. .+ ++.+|..
T Consensus 436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~ 514 (980)
T 3ibv_A 436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL 514 (980)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence 000011222223332 2457889999999999988654322211 011 23455555554 45 8899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh------cchhhHHHHHHHHHHhcCCCC
Q 012897 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN------AEFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~ 325 (454)
++++++..+.--.. ....++.++..+-+ +++.|+..|+.++.+++....
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 99999998862111 12445555555443 567899999999999987543
No 100
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.65 E-value=0.0079 Score=62.70 Aligned_cols=313 Identities=11% Similarity=0.106 Sum_probs=168.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHH
Q 012897 42 PRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGD-SPRCRDL 119 (454)
Q Consensus 42 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~ 119 (454)
+.+..+|..+.++.+...++.+|..+..=- ....+++.++++.+ ..+| ++++++..|+.+|..+.+. .+.+...
T Consensus 209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~ 284 (1073)
T 3gjx_A 209 QLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ 284 (1073)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH
Confidence 334445544444888888999999988722 34567788888888 4666 4688999999999998753 2222222
Q ss_pred HHhcCChHHHH----HHh------------chhhhhhHHHHHHHHHHhhcCCCC-----C-CChhhhhchHHHHHHhhcC
Q 012897 120 VLSQGALIPLL----AQL------------NERAKLSMLRNATWTLSNFCRGKP-----Q-PPFDQVRPALPALAQLVHS 177 (454)
Q Consensus 120 ~~~~~~i~~l~----~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~ 177 (454)
+.. ....++ .++ ....+++.....+..+..+....- . ........++..++.+...
T Consensus 285 ~~~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~ 362 (1073)
T 3gjx_A 285 FET--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV 362 (1073)
T ss_dssp HHH--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred HHH--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC
Confidence 211 111111 111 012234555556666655443320 0 0111223344455666677
Q ss_pred CChhHHHHHHHHHHHhccC----C------h-----------HHHHHHHH---hCcHHHHHHhcCCCCC----------c
Q 012897 178 NDEEVLTDACWALSYLSDG----T------N-----------DKIQAVIE---AGVCPRLVELLGHPSP----------S 223 (454)
Q Consensus 178 ~~~~v~~~a~~~L~~l~~~----~------~-----------~~~~~~~~---~~~i~~L~~ll~~~~~----------~ 223 (454)
++.++...++..-..+... . . .....+.. ..+...++..+..+++ .
T Consensus 363 ~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~ 442 (1073)
T 3gjx_A 363 EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV 442 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence 7888877777665544321 0 0 00111111 1233334444443321 1
Q ss_pred chh------------hHHHHHhHhhccCccchhhhhccCChHHHHHhhcCC-cchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 012897 224 VLI------------PALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHS-HKKSIKKEACWTISNITAG-NRDQIQAV 289 (454)
Q Consensus 224 v~~------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l 289 (454)
+|+ ..-.+|..++.-....... -..+.+.+.+... .++...+.++|+++.++.. .++.-..+
T Consensus 443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~ 518 (1073)
T 3gjx_A 443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF 518 (1073)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence 111 1111222222111111100 1223333333322 2578899999999999753 33222222
Q ss_pred HhCCChHHHHHHhhhc-----chhhHHHHHHHHHHhcCCC--CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHH
Q 012897 290 IDAGLVGPLVNLLQNA-----EFDIKKEAAWAISNATSGG--THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLEN 362 (454)
Q Consensus 290 ~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~ 362 (454)
+ ..+++.|+.+.+.. ...++...+|+++.....- +++... .++..|.+.+.++++.|+..|+.++..
T Consensus 519 L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~ 592 (1073)
T 3gjx_A 519 L-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIK 592 (1073)
T ss_dssp H-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred H-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 24677777777553 2335556678888765431 223222 267888888889999999999999999
Q ss_pred HHHhhhhh
Q 012897 363 ILKVGEAE 370 (454)
Q Consensus 363 l~~~~~~~ 370 (454)
+...+...
T Consensus 593 i~~~C~~~ 600 (1073)
T 3gjx_A 593 IAQKCRRH 600 (1073)
T ss_dssp HHHHTGGG
T ss_pred HHHHHHHH
Confidence 99887653
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0013 Score=57.96 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=122.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcH-HHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-----hh
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPI-EEVI--QSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTS-----EN 74 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-----~~ 74 (454)
+.|.|.++..|..|+..+.+++........ +... -....+.+...+.+.+ ..++..++.++..++.... ..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 357899999999999999998876422211 1111 1234566777888888 8999999999998875211 11
Q ss_pred hHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897 75 TKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 75 ~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 153 (454)
.....-..+++.|+. .+.+..+.++..+..++..++...... .. .++.++..+ .+.++.++..++..|..+.
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 111112345777775 477888999999988887776322111 11 133444445 6678899999888888877
Q ss_pred CCC--CCCC-hhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 154 RGK--PQPP-FDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 154 ~~~--~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
... .... ......+++.+..++.+.++.||..|..++..+-..
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 542 1111 223345667788899999999999999999877644
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.62 E-value=0.00027 Score=60.72 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=121.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCcc---chhhh
Q 012897 170 ALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDF---QTQCI 246 (454)
Q Consensus 170 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~ 246 (454)
.+...+-+.|..-+..++..|.......+......++ .+++.+.-.+.+++..+...++.+|..+...-.. .....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 4455555667777777777777655433322111111 1233333334577888888888888877532111 11111
Q ss_pred hccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC
Q 012897 247 ITYGALPYLLGLLTHSHKKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 247 ~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 325 (454)
...-++|.|+.-+-++ ...+|..+-.++..+.. .++. .+++.+++-+.+.+..+|..++..+..+.....
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 1135689999999888 78899988888776654 2222 256678888888999999999999998866322
Q ss_pred HHHHHHHHHcCCc---HHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 326 HEQIKYLVREGCI---KPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 326 ~~~~~~l~~~~~i---~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
.. ....+ +.+..++.++|..|+..|+.++..+.+...
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 11 23468 999999999999999999999998887543
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.62 E-value=1.5e-05 Score=67.99 Aligned_cols=186 Identities=15% Similarity=0.059 Sum_probs=118.0
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 012897 3 AGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHG 82 (454)
Q Consensus 3 ~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 82 (454)
..++++++.+|..++..+ . ...+..++++++ +.+|..++..| .
T Consensus 57 ~ll~d~~~~VR~~AA~~l--------~-----------~~~l~~L~~D~~-~~VR~~aA~~L---~-------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS--------P-----------VEALTPLIRDSD-EVVRRAVAYRL---P-------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS--------C-----------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred HHhcCCCHHHHHHHHHhC--------C-----------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence 345677788887777743 0 123566677777 78888877542 1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChh
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFD 162 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (454)
.+.|..++.++++.+|..++..+ . + ..+..++ ++++..|+..+... +.
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~~L~-~D~d~~VR~~aA~~---l~--------- 147 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVADRL---P---L------------EQLEQMA-ADRDYLVRAYVVQR---IP--------- 147 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGGGGT-TCSSHHHHHHHHHH---SC---------
T ss_pred -HHHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHHHHH-cCCCHHHHHHHHHh---cC---------
Confidence 13466677788888888777632 1 1 1122233 67778888877763 11
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ 242 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 242 (454)
.+.+..+++++++.|+..++..+ . .+.+..++.++++.||..++..+
T Consensus 148 -----~~~l~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 -----PGRLFRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL---------- 194 (244)
T ss_dssp -----GGGGGGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC----------
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC----------
Confidence 12344566778888888877641 1 13445677888888888887653
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHH
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAIS 318 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 318 (454)
..+.|..++.++ ++.||..++..++ .+.|..+ +++++.|+..+...|+
T Consensus 195 --------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 --------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp --------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred --------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 124567778888 8889988877643 2345445 7778889888876543
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.61 E-value=0.0022 Score=55.11 Aligned_cols=180 Identities=15% Similarity=0.076 Sum_probs=122.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhc----CC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFC----RG 155 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~----~~ 155 (454)
+=+.+...|-+.+..-+..++..|.......+. .+.. .+..+++-+. .+.+..+...++.+|..+. ..
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666677778788788777776543332 2211 2333333221 3557777777777777664 22
Q ss_pred CCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHh
Q 012897 156 KPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNI 235 (454)
Q Consensus 156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 235 (454)
...........++|.|+.-+.+..+.+|..+-.++..++.-.+. ..+++.++.-+++.++..|..++..++.+
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 22222223367889999999999999998888887766532221 13567788888999999999999999999
Q ss_pred hccCccchhhhhccCCh---HHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 236 VTGDDFQTQCIITYGAL---PYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 236 ~~~~~~~~~~~~~~~~l---~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
....... ....+ +.+..++.+. +..||..|..++..+-.
T Consensus 195 i~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 8643222 23467 9999999998 99999999999987765
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.53 E-value=0.0045 Score=54.34 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=147.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 77 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPR----CRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 77 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
.+...+.+..|+..|..-+.+.|..+..++.++.+.... ..+.+.. -...+..++....++++.-.+-..|+..
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 445568899999999998999999999999999865432 2223332 2344444443445666666777777777
Q ss_pred cCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhcCCCCCcchhhHH
Q 012897 153 CRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLGHPSPSVLIPAL 229 (454)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~ 229 (454)
.++..........+.+..+...++.++-++...|..++..+...+......++.. .++...-.++.+++.-++..++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7664434444445566678888899999999999999998876666555555554 3567777889999999999999
Q ss_pred HHHhHhhccCcc---chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhc
Q 012897 230 RTVGNIVTGDDF---QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITA 280 (454)
Q Consensus 230 ~~L~~l~~~~~~---~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~ 280 (454)
..|+.+...... ..+.+-+..-+..++.+|++. +..++.+|..++.-+..
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999864321 123334556789999999999 99999999999987776
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.43 E-value=0.00012 Score=68.10 Aligned_cols=237 Identities=17% Similarity=0.119 Sum_probs=145.8
Q ss_pred cccCCCHHHHHHHHHHHHHHhccCCCCcHHH-HHHcCCHHHHHHhhc---------CCCChhHHHHHHHHHHHhcCCCch
Q 012897 4 GVWSDDSSLQLEATTQFRKLLSIERSPPIEE-VIQSGVVPRFVEFLM---------REDYPQLQFEAAWALTNIASGTSE 73 (454)
Q Consensus 4 ~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~l~~L~~lL~---------~~~~~~v~~~a~~~L~~l~~~~~~ 73 (454)
.|-++.+++|..|+-+|+.++.......... -....+.-.++-.+. +.--..||+.|+++|+.+ ..-+.
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~ 260 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG 260 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence 4568899999999999999987642110000 000022223333222 111246899999999999 63443
Q ss_pred hhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhc
Q 012897 74 NTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 74 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~ 153 (454)
. ..++..++..+..+..++|..++..|.-+. +-... -.++++.++..| .+.+++|+..|+.+|.-++
T Consensus 261 e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 261 P------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp S------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC
T ss_pred h------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc
Confidence 3 345566666667788999999999988771 11111 122466677777 6778999999999999988
Q ss_pred CCCCCCChhhhhchHHHHHHhhcCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHH
Q 012897 154 RGKPQPPFDQVRPALPALAQLVHSND--EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRT 231 (454)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 231 (454)
.......++..+-.+|.+-| .......+..|+.++...... ......+|.|.+++.++-..||.+++.+
T Consensus 328 ------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 328 ------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp ------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred ------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 11234556666666665432 122344444555555433210 1113789999999999999999999999
Q ss_pred HhHhhccCccchhhhhccCChHHHHH-hhcCCcchhHHHHHHHHH
Q 012897 232 VGNIVTGDDFQTQCIITYGALPYLLG-LLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 232 L~~l~~~~~~~~~~~~~~~~l~~L~~-~L~~~~~~~v~~~a~~~L 275 (454)
+..+. ...++..+.+ +|-.. +.+++..+..+-
T Consensus 399 L~tfL-----------~~~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 399 VKNLS-----------EESIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp TTTCC-----------CHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHH-----------hhhHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 98877 1123333333 33334 666766655444
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0018 Score=56.91 Aligned_cols=188 Identities=12% Similarity=0.136 Sum_probs=124.8
Q ss_pred HHHhcCCCCCcchhhHHHHHhHhhccCccch--hhhh--ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC------
Q 012897 213 LVELLGHPSPSVLIPALRTVGNIVTGDDFQT--QCII--TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN------ 282 (454)
Q Consensus 213 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~--~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~------ 282 (454)
+-..+.+.++..|..++..+..+....+... .... -....+.+-..+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5677899999999999999988775433211 0111 113456677788777 9999999999999887521
Q ss_pred HHHHHHHHhCCChHHHHHH-hhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHH
Q 012897 283 RDQIQAVIDAGLVGPLVNL-LQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLE 361 (454)
Q Consensus 283 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~ 361 (454)
.......+ ..+++.|++- +.+....++..+..++..++....... .+++.+...+++.+|+++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111122 3456666653 566678888888888887765432111 13567778899999999999999999
Q ss_pred HHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 012897 362 NILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL 420 (454)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 420 (454)
+++....... .+ ....+ ..+++.+..+.++.+++|+..|..++-.++.
T Consensus 165 ~~l~~fg~~~--------~~-~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTN--------VN-VQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTT--------CC-HHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCc--------CC-chhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987533211 10 11111 1234567788899999999999998776654
No 108
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.32 E-value=3.8e-05 Score=65.54 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=127.4
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 012897 46 EFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGA 125 (454)
Q Consensus 46 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 125 (454)
.++.+++ +.+|..++..+ ....+..+++++++.+|..++..+ .
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence 4557777 89998888743 123467778889999999888642 1
Q ss_pred hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 012897 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVI 205 (454)
Q Consensus 126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 205 (454)
.+.+..++ .+++..|+..+...+ . .+.+..++.++++.|+..+...+ .
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~l---~----------- 147 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRI---P----------- 147 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHS---C-----------
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHhc---C-----------
Confidence 12234444 778889998888743 1 02345667888999998887631 1
Q ss_pred HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
.+.+..+++++++.||..++..+. .+.+..+++++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 124456778899999999887521 13444677777 999999988652
Q ss_pred HHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897 286 IQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360 (454)
Q Consensus 286 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L 360 (454)
..+.|..++.++++.||..++..+. .+.|..+ +++++.|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1345777889999999999988853 2345556 888999998876543
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.14 E-value=0.0056 Score=51.27 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHH--HHHHcCCHHHHHHh-------hcCCC-Ch---hHHHHHHHHHHHhcCCCchhh
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIE--EVIQSGVVPRFVEF-------LMRED-YP---QLQFEAAWALTNIASGTSENT 75 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~l~~L~~l-------L~~~~-~~---~v~~~a~~~L~~l~~~~~~~~ 75 (454)
+|+.|..|+..|.+--.. .+... ....-|.+..|++= +..+. .. .-...|+..|-.++. +++.+
T Consensus 14 ~p~~Re~AL~eLsk~Re~--~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr 90 (268)
T 2fv2_A 14 SPETRENALLELSKKRES--VPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETR 90 (268)
T ss_dssp STTTHHHHHHHHHHHTTT--CTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTH
T ss_pred CchhHHHHHHHHHHhhhc--cccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchh
Confidence 456688888888775443 23332 23345666666542 22221 01 112444555566676 89999
Q ss_pred HHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHH
Q 012897 76 KVVIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVA-GDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTL 149 (454)
Q Consensus 76 ~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 149 (454)
..+++..+.-.|..+|+..+ +-+|-.++.+++.+. .++++.-..+...++++..++.+ +..++-.+..|..++
T Consensus 91 ~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim-e~GselSKtvAtfIl 169 (268)
T 2fv2_A 91 SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM-ESGSELSKTVATFIL 169 (268)
T ss_dssp HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH-HHSCHHHHHHHHHHH
T ss_pred hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH-hhccHHHHHHHHHHH
Confidence 99999998888888887532 678999999999988 45666777888899999999999 666777777888888
Q ss_pred HhhcCCCCC--------CChhhhhchHHHHH-HhhcCCChhHHHHHHHHHHHhccCC
Q 012897 150 SNFCRGKPQ--------PPFDQVRPALPALA-QLVHSNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 150 ~~l~~~~~~--------~~~~~~~~~l~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~ 197 (454)
..+..++.. ..+.....++..++ .+.+++++.+..++++|...++.+.
T Consensus 170 qKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 170 QKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 777765411 11222233443333 3446778899999999999998764
No 110
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.10 E-value=0.028 Score=58.71 Aligned_cols=297 Identities=12% Similarity=0.114 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 012897 7 SDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRF-VEFLMREDYPQLQFEAAWALTNIASGT-SENTKVVID--HG 82 (454)
Q Consensus 7 s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g 82 (454)
+.++++...++.+|..+++=- ....+++.+.++.+ ..+|. + +.++..|+.||..+.... ++....+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 457788888888888887552 35667788888888 46653 4 789999999999988632 222222211 12
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-C-------ChHHHHHHhchhhhhhH
Q 012897 83 AVPIFVKLL-------------ASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ-G-------ALIPLLAQLNERAKLSM 141 (454)
Q Consensus 83 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l~~~~~~~~ 141 (454)
++..+..++ ...+.+.....+.++..+... +...+... + ++..++.+- ..++.++
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s-~~~d~ei 367 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS-EVEETEI 367 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT-TCSCHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh-CCCcHHH
Confidence 222222222 112345555555666555421 11222111 1 122233333 4456777
Q ss_pred HHHHHHHHHhhcCC----CC-----C----------C--ChhhhhchHHH----HHHhhcCCC-----------------
Q 012897 142 LRNATWTLSNFCRG----KP-----Q----------P--PFDQVRPALPA----LAQLVHSND----------------- 179 (454)
Q Consensus 142 ~~~a~~~L~~l~~~----~~-----~----------~--~~~~~~~~l~~----l~~ll~~~~----------------- 179 (454)
...++..-..|..+ .+ . . ......+++.. ++.-+..+.
T Consensus 368 ~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~ 447 (1073)
T 3gjx_A 368 FKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFM 447 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHH
Confidence 66666554433321 11 0 0 01112333333 333333221
Q ss_pred ---h-----hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC--CCCcchhhHHHHHhHhhccCccchhhhhcc
Q 012897 180 ---E-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH--PSPSVLIPALRTVGNIVTGDDFQTQCIITY 249 (454)
Q Consensus 180 ---~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 249 (454)
. ++.+.++..+.++.. .+... -..+.+...+.. .++...++++++++.++..-....+.-.=.
T Consensus 448 ~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 448 KDTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1 122223333332221 11111 123334433433 357788999999999984333211111112
Q ss_pred CChHHHHHhhcCCc--c--hhHHHHHHHHHHHHhc---CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 250 GALPYLLGLLTHSH--K--KSIKKEACWTISNITA---GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 250 ~~l~~L~~~L~~~~--~--~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
.+++.|+.+..++. + ..++...+|+++..+. ..++.. ..++..+++.+.+.++.|+..|+.++..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-----~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-----KTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45666666664431 2 2355566789988765 233322 2357778888888899999999999999987
Q ss_pred CCC
Q 012897 323 GGT 325 (454)
Q Consensus 323 ~~~ 325 (454)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 543
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.96 E-value=0.034 Score=46.67 Aligned_cols=185 Identities=11% Similarity=0.143 Sum_probs=123.6
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHH-hCcHHHHHHh-------cCCCCCc-----chhhHHHHHhHhhccCccchhh
Q 012897 179 DEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVEL-------LGHPSPS-----VLIPALRTVGNIVTGDDFQTQC 245 (454)
Q Consensus 179 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~l-------l~~~~~~-----v~~~a~~~L~~l~~~~~~~~~~ 245 (454)
+++.|+.|+.-|+.--+..++..-.+.. .|.+..+++= +..+.-. -..+|+..+..++. .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 5566888877776654444444333333 3555554432 2222111 11345555555665 4556778
Q ss_pred hhccCChHHHHHhhcCCc----chhHHHHHHHHHHHHhc-CCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 246 IITYGALPYLLGLLTHSH----KKSIKKEACWTISNITA-GNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 246 ~~~~~~l~~L~~~L~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
+++.++.-.|..+|.... ...+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.--|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 899999888888886542 35689999999999987 6788898999999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHH--------cCCcHHH-hhccCCCCHHHHHHHHHHHHHHHHh
Q 012897 321 TSGGTHEQIKYLVR--------EGCIKPL-CDLFVCPDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 321 ~~~~~~~~~~~l~~--------~~~i~~L-~~~l~~~~~~v~~~al~~L~~l~~~ 366 (454)
.. ++....++.. ..++..+ ..+.+.+.+.+.+++++|-.++...
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 87 3444444322 1122222 2344567788888888888777643
No 112
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.82 E-value=0.089 Score=46.15 Aligned_cols=293 Identities=13% Similarity=0.127 Sum_probs=170.7
Q ss_pred HHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHH
Q 012897 106 LGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLT 184 (454)
Q Consensus 106 L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~ 184 (454)
|.++..+.+..-+-+...+++..+...+ ..++.++.+..+..|...+... .....-....+|.++..++ ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence 3444455555556677788888888888 6778899999999998887653 1222233677888888775 67899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-------CCcchhhHHHHHhHhhcc------------C------
Q 012897 185 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-------SPSVLIPALRTVGNIVTG------------D------ 239 (454)
Q Consensus 185 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~------------~------ 239 (454)
.....|+|+..+.....+..+..+.+..|-..+... +..-+..||.+++|..+. +
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999999888878788889988888776331 222234444444443310 0
Q ss_pred ----ccchhhhhccCChHHHHHhhcCCc-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHhCCChHHHHHHhh
Q 012897 240 ----DFQTQCIITYGALPYLLGLLTHSH-----KKSIKKEACWTISNITAGN---RDQI----QAVIDAGLVGPLVNLLQ 303 (454)
Q Consensus 240 ----~~~~~~~~~~~~l~~L~~~L~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~i~~L~~ll~ 303 (454)
..+...+++..+++.|+.+|+-+. -.++|......+--+.+.. .+.. ....+.+.+..++-.+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 012334566678888988886541 2355666655554444321 0100 01112334444433321
Q ss_pred ---h--c-------chhhHHHHHHHHHHhcCCC-CHHH-HHHHHHcCCcHHHhhccCCC--CHHHHHHHHHHHHHHHHhh
Q 012897 304 ---N--A-------EFDIKKEAAWAISNATSGG-THEQ-IKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 304 ---~--~-------~~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~~~ 367 (454)
. . ...+.+.+...|..+.+.. ++.+ ..++ -.+..=..+++.. .|.....++..=.++++.+
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHc 580 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHC 580 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhC
Confidence 0 1 1223344444554444432 2222 1111 2244445566643 4666666666666666655
Q ss_pred hhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 012897 368 EAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETY 418 (454)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 418 (454)
+.... +|.. ++ ..++-+.+|.|+++.+.|..++.++
T Consensus 581 P~~Ad----~W~i--~r---------~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 581 PTRAD----IWTI--DR---------PMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp TTHHH----HSCC--CH---------HHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred cchhc----ccee--ch---------HHHHHHhcCCCchHHHHHHHHHHhC
Confidence 43211 0000 11 2345667999999999999888765
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.56 E-value=0.018 Score=48.82 Aligned_cols=141 Identities=12% Similarity=0.082 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCC----HH-HHHHH-----
Q 012897 264 KKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGT----HE-QIKYL----- 332 (454)
Q Consensus 264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~~l----- 332 (454)
+......++.||..+... ......++ ..+.+..+...+.++++.++..++..|..++.... .+ ....+
T Consensus 67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 345677888888888754 55555666 45678888888988899999999998888776543 11 11111
Q ss_pred -HHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897 333 -VREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 410 (454)
Q Consensus 333 -~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 410 (454)
.+..-...+++.++ ..+.+.+..++..+..++...+... .--..+..|...|..+.+.++...+++++...
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 12234566777776 4567888888888888887765433 22236778889999999999999899887666
Q ss_pred HH
Q 012897 411 AV 412 (454)
Q Consensus 411 a~ 412 (454)
..
T Consensus 219 i~ 220 (233)
T 2f31_A 219 LC 220 (233)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 114
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.54 E-value=0.17 Score=44.53 Aligned_cols=198 Identities=14% Similarity=0.072 Sum_probs=138.6
Q ss_pred HHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc----hhhhhc-cCChHHHHHhhcCCcchhHHHHHHHHHH
Q 012897 202 QAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ----TQCIIT-YGALPYLLGLLTHSHKKSIKKEACWTIS 276 (454)
Q Consensus 202 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~-~~~l~~L~~~L~~~~~~~v~~~a~~~L~ 276 (454)
+.+...+++..|+..|..=+.+.|..+..+..++.+..... ...+.. ..++..|+.... ++++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 44666788999999998888889999999999998754422 222222 234444444444 3445555556666
Q ss_pred HHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHc---CCcHHHhhccCCCCHHHH
Q 012897 277 NITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVRE---GCIKPLCDLFVCPDPRIV 353 (454)
Q Consensus 277 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~~l~~~~~~v~ 353 (454)
-++.. +...+.++..+.+..+.+.++.++.++...|..++..+... .+.....+... .+......++.+++.-++
T Consensus 149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 66654 66666777888888999999999999999999999988775 44444444443 346777889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHH
Q 012897 354 TVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKI 414 (454)
Q Consensus 354 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 414 (454)
..++..|+.++-...+..- -...+.+..-++.+..++.+++..++-.|-.+
T Consensus 227 RQSlKLLgelLldr~N~~v----------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhV 277 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHV 277 (341)
T ss_dssp HHHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHH----------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhh
Confidence 9999999999876544321 23344455556677778888887776666554
No 115
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.51 E-value=0.023 Score=49.75 Aligned_cols=174 Identities=14% Similarity=0.188 Sum_probs=119.4
Q ss_pred HHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHH
Q 012897 190 LSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKK 269 (454)
Q Consensus 190 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~ 269 (454)
|.++.-++...++-+++.+++..+...++.++.++..+.++.|-..+.... ....-+ ...++.++..+.-..+.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-cccchHHHHHhccCCCcceEE
Confidence 345555667788999999999999999999999999999999988875332 111111 256788888876444889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc-------chhhHHHHHHHHHH-------hcC------CC-----
Q 012897 270 EACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA-------EFDIKKEAAWAISN-------ATS------GG----- 324 (454)
Q Consensus 270 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~-------l~~------~~----- 324 (454)
...+.|+|...+........+.+|.++.|...+... +..-++.|+..++| +.- ++
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999998777666667899999999887542 22334444444444 322 11
Q ss_pred ---CHHHHHHHHHcCCcHHHhhccCCCC------HHHHHHHHHHHHHHHH
Q 012897 325 ---THEQIKYLVREGCIKPLCDLFVCPD------PRIVTVCLEGLENILK 365 (454)
Q Consensus 325 ---~~~~~~~l~~~~~i~~L~~~l~~~~------~~v~~~al~~L~~l~~ 365 (454)
+.++...+++.++++.|+.+++.+. -+++...+..+.-+++
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 2334445566678888888887543 2455555555444443
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.48 E-value=0.14 Score=47.25 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHH
Q 012897 94 PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ 173 (454)
Q Consensus 94 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ 173 (454)
+++..+..|...|.....+-|...+.. +..++.++ .+.+..+|..|+..|..+|.+ .....+..+|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 578999999999999988888776663 77889999 788899999999999999976 336778889999
Q ss_pred hhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhh
Q 012897 174 LVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIV 236 (454)
Q Consensus 174 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 236 (454)
+|.++++.-...+-.+|..+...++.. .+..+...+..+++.+|+.++..|..=.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 999998877777777777766554422 2333333333356788888887775444
No 117
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.46 E-value=0.55 Score=43.46 Aligned_cols=253 Identities=11% Similarity=0.031 Sum_probs=142.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 012897 44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQ 123 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (454)
++...+ ++ +..+..|++.+.......|+..+. ++..++.+..+.+..+|.+|++.|..+|.+ .....
T Consensus 34 Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k---- 100 (507)
T 3u0r_A 34 ILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR---- 100 (507)
T ss_dssp HHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH----
T ss_pred HHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh----
Confidence 444333 35 789999999999999988887766 478999999999999999999999999987 33333
Q ss_pred CChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC-ChHHHH
Q 012897 124 GALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG-TNDKIQ 202 (454)
Q Consensus 124 ~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 202 (454)
+...|+++| +..++.-...+-.+|..+...++ .+.+..+..-+.++++.+|+.++..|..-... ..+...
T Consensus 101 -iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~ 171 (507)
T 3u0r_A 101 -VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT 171 (507)
T ss_dssp -HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred -HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc
Confidence 366788888 44454444555555555544321 35556666666667899999999888653321 111111
Q ss_pred HHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhh------cCCcchhHHHHHHHHH
Q 012897 203 AVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLL------THSHKKSIKKEACWTI 275 (454)
Q Consensus 203 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L------~~~~~~~v~~~a~~~L 275 (454)
.-.+.-++..+...|.+-...--.-.+.+|..+-.... ...+ .+++.+.... ... +.+.-.....++
T Consensus 172 ~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~q-----eLv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~ 245 (507)
T 3u0r_A 172 KEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQ-----QLVELVAEQADLEQTFNPS-DPDCVDRLLQCT 245 (507)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHH-----HHHHHHHHHHTTTSCCCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHH-----HHHHHHHHHHhccCCCCCc-CHHHHHHHHHHH
Confidence 22222344455555543322212223333333322211 1111 1223333322 112 343333333333
Q ss_pred HHHh----c--CCHHHHHHHHhCCChHHHHHHhhhc-chhhHHHHHHHHHHhcCCCC
Q 012897 276 SNIT----A--GNRDQIQAVIDAGLVGPLVNLLQNA-EFDIKKEAAWAISNATSGGT 325 (454)
Q Consensus 276 ~nl~----~--~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~ 325 (454)
..-. . .+.....++.+ .++|.+-.+-... .++.+...+.++..++....
T Consensus 246 ~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 246 RQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp HHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 3222 2 34454544443 4777544333321 23477788888888887665
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.40 E-value=0.15 Score=42.36 Aligned_cols=144 Identities=16% Similarity=0.039 Sum_probs=103.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhHH
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSPRCRD 118 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 118 (454)
++....+.+++. ..+|..|+..|+.+ ... ...++.+.. +-.+++..|++.+..++..++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 344445556666 79999999998887 311 124566666 5556889999999999999884 33321
Q ss_pred HHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 119 LVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 119 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
.++.+..-. .+++..+++.|+..+.--+... ........++|.+-.+..+++.-|+..+.+.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 355556555 8889999999998876544321 1222335578888888888999999999999999999998
Q ss_pred HHHHHHHH
Q 012897 199 DKIQAVIE 206 (454)
Q Consensus 199 ~~~~~~~~ 206 (454)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87666655
No 119
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.37 E-value=0.046 Score=45.46 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=101.0
Q ss_pred HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHH-hhcCCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 012897 128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQ-LVHSNDEEVLTDACWALSYLSD-GTNDKIQAVI 205 (454)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~ 205 (454)
.+...|.+++..+++..|+.+|..+ . .....++.+.. +...++-.|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 3444444666679999999988887 2 12457777777 5667788999999999988874 3332
Q ss_pred HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHH
Q 012897 206 EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQ 285 (454)
Q Consensus 206 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~ 285 (454)
..++.+.....+++..+|..|...+...+.. +... .-...+++.+-.+..++ +..||+..+|.|..++..+|+-
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 2567788899999999999998877654432 1110 00112445555555666 8999999999999999998987
Q ss_pred HHHHHh
Q 012897 286 IQAVID 291 (454)
Q Consensus 286 ~~~l~~ 291 (454)
+..+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766664
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.00 E-value=0.048 Score=49.90 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=110.7
Q ss_pred cchhhhhccCChHHHHHhhcC----------CcchhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhh
Q 012897 241 FQTQCIITYGALPYLLGLLTH----------SHKKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDI 309 (454)
Q Consensus 241 ~~~~~~~~~~~l~~L~~~L~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v 309 (454)
...+.+. .+++..|+.+|.. ..+......++.||..+... ......++ ....+..+...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 3444444 4566777766631 11346677888899888754 45555666 4677899999999999999
Q ss_pred HHHHHHHHHHhcCCCCH----H-HHHHH------HHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCc
Q 012897 310 KKEAAWAISNATSGGTH----E-QIKYL------VREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTAT 377 (454)
Q Consensus 310 ~~~a~~aL~~l~~~~~~----~-~~~~l------~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 377 (454)
+..+...|..++....+ + ....+ .+..-...++..++. .+.+.+..++..+..++...+...
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------ 252 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 252 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence 99999999888876531 1 11111 122446778888886 577888888888888887665433
Q ss_pred ccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897 378 ADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 410 (454)
Q Consensus 378 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 410 (454)
.--..+..|...|..+.+.++...+++++...
T Consensus 253 -~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 253 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 22236777889999999999988888877654
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.71 E-value=0.57 Score=49.23 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=108.7
Q ss_pred hHHHHHHhchh---hhhhHHHHHHHHHHhhc----CCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCCh
Q 012897 126 LIPLLAQLNER---AKLSMLRNATWTLSNFC----RGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 126 i~~l~~~l~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
+..+..++... .++.++..++.+++.|. .+.+.........+...+...+...+..-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 34445555322 24556666666666554 3333333344556666777777888888889999999998742
Q ss_pred HHHHHHHHhCcHHHHHHhcCC-----C--CCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcC-CcchhHHHH
Q 012897 199 DKIQAVIEAGVCPRLVELLGH-----P--SPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTH-SHKKSIKKE 270 (454)
Q Consensus 199 ~~~~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~v~~~ 270 (454)
..++.+.+++.. . ...++..|+++|..++...+.. +-+.+++++.+ ..++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHH
Confidence 245566666632 1 2357788999999998643322 23567777732 227889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCH
Q 012897 271 ACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTH 326 (454)
Q Consensus 271 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 326 (454)
|+..|.... .+.. .+..+...+.. .+..|.......|.+++....+
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 988886442 2222 34445565655 4788888888888888887655
No 122
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.48 E-value=0.65 Score=49.66 Aligned_cols=283 Identities=10% Similarity=0.046 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 012897 54 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGD-----SPRCRDLVLSQGAL 126 (454)
Q Consensus 54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i 126 (454)
+..|..|-..|.++-. ++ .+...+...| .+.+..+|..|+.+|.+.... +++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6788888888877654 22 2334444433 346789999999999987632 222233322
Q ss_pred HHHHHHhchh------hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC----
Q 012897 127 IPLLAQLNER------AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG---- 196 (454)
Q Consensus 127 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~---- 196 (454)
..++..+... ....++...+.++..++...-. .....+++.++.++.+ ++..+..++.+|..++..
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence 2344444222 3577888889999988876411 2245788888888876 556677788888777632
Q ss_pred ---ChHHHHH---HHHh---CcHHHHHHhcCC-------------------CCCcchhhHHHHHhHhhccCccchhhhhc
Q 012897 197 ---TNDKIQA---VIEA---GVCPRLVELLGH-------------------PSPSVLIPALRTVGNIVTGDDFQTQCIIT 248 (454)
Q Consensus 197 ---~~~~~~~---~~~~---~~i~~L~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 248 (454)
...+... .+.. .++..+..++.+ .+..++..++.++.++..--+ ...+.+
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~ 245 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA 245 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence 1111111 1121 222233333322 123466677888877664322 122333
Q ss_pred cC--ChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC--HHHHHHHHhC---CChHHHHHHh--------hhcchhhHHHH
Q 012897 249 YG--ALPYLLGLLTHSHKKSIKKEACWTISNITAGN--RDQIQAVIDA---GLVGPLVNLL--------QNAEFDIKKEA 313 (454)
Q Consensus 249 ~~--~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll--------~~~~~~v~~~a 313 (454)
.. .++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++... .+.+.++.+..
T Consensus 246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 32 6677776654 4578999999999999733 4433333321 0122344443 22356777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHH-----------cCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 314 AWAISNATSGGTHEQIKYLVR-----------EGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 314 ~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
+..+..+.. .. ..++. .++++.+..+..+++..+...++..-..+++
T Consensus 323 ~~ll~~lg~----~l-~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 323 CQVLCALGN----QL-CALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHH----HH-HHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH----HH-HHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence 777777652 11 11111 1246667777777666666665554444444
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.36 E-value=0.23 Score=45.52 Aligned_cols=139 Identities=12% Similarity=0.080 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHH-hCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHH-----HHHHH-----
Q 012897 264 KKSIKKEACWTISNITAGNRDQIQAVI-DAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHE-----QIKYL----- 332 (454)
Q Consensus 264 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-----~~~~l----- 332 (454)
+......++.||..++.. ......++ ....+..+...+.+..+.++..++..|..++....+. ....+
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 446677888888888754 44555555 4567888999998889999999998888777754311 11111
Q ss_pred -HHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHH
Q 012897 333 -VREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEK 410 (454)
Q Consensus 333 -~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 410 (454)
.+..-...|++.+. ..+.+.+..++..+..++...+... .--..+..|...|..+.+..+....++++...
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 12234556777776 4566788888888888887766443 22336778999999999999998888887655
No 124
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.20 E-value=0.37 Score=40.63 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCC----C------ChhHHHHHHHHHHHhcCCCchhhHHHHh-CCC
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMRE----D------YPQLQFEAAWALTNIASGTSENTKVVID-HGA 83 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~----~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~ 83 (454)
..+..|...+...+...++.+ ..+++..|+..|..- . +.+.+..++.||..+.. +......++. .+.
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHH
Confidence 445555555555434556667 456777777776531 1 25678899999999998 5555555554 578
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDS 113 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 113 (454)
+..+...|.++++.++..++..|..+|...
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998654
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.05 E-value=0.57 Score=42.80 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=93.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHhcCCCchhhHHHH-hCCC
Q 012897 15 EATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----------EDYPQLQFEAAWALTNIASGTSENTKVVI-DHGA 83 (454)
Q Consensus 15 ~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~ 83 (454)
..+..|+.-+...+...++.++ .+++..|+..|.. ..+...+..++.||..+.. +......++ ....
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~ 163 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHH
Confidence 4566666656554344566776 5568888888752 1125788899999999998 555555554 4578
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 84 VPIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 84 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
+..+...+.++++.++..++..|..+|.... .. ...++ +..-+..++..+....+.+.+..++..+-.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~ 243 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA 243 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999996553 21 22222 223456666666444556666666666666
Q ss_pred hcCCCC
Q 012897 152 FCRGKP 157 (454)
Q Consensus 152 l~~~~~ 157 (454)
+....+
T Consensus 244 li~~~~ 249 (383)
T 3eg5_B 244 LITPAE 249 (383)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 665543
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.04 E-value=2.8 Score=44.80 Aligned_cols=289 Identities=9% Similarity=0.044 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC-----CchhhHHHHhCC
Q 012897 9 DSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLM-REDYPQLQFEAAWALTNIASG-----TSENTKVVIDHG 82 (454)
Q Consensus 9 d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~g 82 (454)
|++.|.+|-..|.++-... .....+...|. .+.++.+|..|+..|.+.... .++.+..+ ...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence 4455555555555543321 23444444443 333389999999999987642 23333333 334
Q ss_pred ChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCC---
Q 012897 83 AVPIFVKLLAS---PSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGK--- 156 (454)
Q Consensus 83 ~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--- 156 (454)
+++.+...... ....++...+.++..++...-..+ =.+.++.+++++.. ++.....++.+|..++.+.
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccc
Confidence 45554443221 458888888888888873211000 01346677777633 3455677788888876542
Q ss_pred CCCChhh-----------hhchHHHHHHhhcC-------------------CChhHHHHHHHHHHHhccCChHHHHHHHH
Q 012897 157 PQPPFDQ-----------VRPALPALAQLVHS-------------------NDEEVLTDACWALSYLSDGTNDKIQAVIE 206 (454)
Q Consensus 157 ~~~~~~~-----------~~~~l~~l~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 206 (454)
....... ...+++.+..++.+ .+..++..++.++.+....-+. ..+.+
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~ 245 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITA 245 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHh
Confidence 1111110 11344444444432 1244677778888776654332 22333
Q ss_pred hC--cHHHHHHhcCCCCCcchhhHHHHHhHhhccCc--cchhhhhc---cCChHHHHHhhc-------CCcchhHHHHHH
Q 012897 207 AG--VCPRLVELLGHPSPSVLIPALRTVGNIVTGDD--FQTQCIIT---YGALPYLLGLLT-------HSHKKSIKKEAC 272 (454)
Q Consensus 207 ~~--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~---~~~l~~L~~~L~-------~~~~~~v~~~a~ 272 (454)
.. +++.+..++. +++++..|+.||..++.... .....++. ...+..++..+. +..+.++.+..+
T Consensus 246 ~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 246 ENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp TTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 32 6777776665 56799999999999997442 22122221 111234444432 111445666777
Q ss_pred HHHHHHhcCCHHHHHHHHh-----------CCChHHHHHHhhhcchhhHHHHHHHHHHhcCC
Q 012897 273 WTISNITAGNRDQIQAVID-----------AGLVGPLVNLLQNAEFDIKKEAAWAISNATSG 323 (454)
Q Consensus 273 ~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 323 (454)
..+..+.. . ...++. .++++.++.+..+++..+...++.....+...
T Consensus 324 ~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 324 QVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 77776652 1 112221 13577777777777777777777766656554
No 127
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.95 E-value=1.1 Score=39.47 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChH----HHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 012897 41 VPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVP----IFVKLLAS-PSDDVREQAVWALGNVAGDSPR 115 (454)
Q Consensus 41 l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 115 (454)
+..+.++++-+ .+.+--++..++-++. .+.....+.+.+.-. .+...+.+ ..+.-+-.++++++|+.....
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~- 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA- 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence 45666666333 3455666666666665 565555555433223 33344443 456678889999999975543
Q ss_pred hHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHhhcCCC-CCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHH
Q 012897 116 CRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALAQLVH-SNDEEVLTDACWAL 190 (454)
Q Consensus 116 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L 190 (454)
.+..+.. ....++..+. .+.+..++..+..++.|++... ..........++..+..+++ ..+.+....++.+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5555543 2344444432 3446788888888888887653 11222333445556666664 35889999999999
Q ss_pred HHhccCChHHHHHHHH
Q 012897 191 SYLSDGTNDKIQAVIE 206 (454)
Q Consensus 191 ~~l~~~~~~~~~~~~~ 206 (454)
+++....... ..+.+
T Consensus 259 GtL~~~~~~~-~~lak 273 (304)
T 3ebb_A 259 GTLISDDSNA-VQLAK 273 (304)
T ss_dssp HHHHTTCHHH-HHHHH
T ss_pred HHHHhCChhH-HHHHH
Confidence 9999775543 33443
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.37 E-value=2.1 Score=36.41 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHh
Q 012897 11 SLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL 90 (454)
Q Consensus 11 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 90 (454)
+.+...++....++....+.... .+++.++.+..+++ .++|...+..+...+...++... ..++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 57777777777766553222222 24666777666655 78888888888777753333222 246677777
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 012897 91 LASPSDDVREQAVWALGNV 109 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l 109 (454)
+.++++.+...++.+..++
T Consensus 99 l~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 7777777777777766665
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.27 E-value=0.12 Score=45.52 Aligned_cols=111 Identities=11% Similarity=0.051 Sum_probs=71.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 012897 44 FVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVL 121 (454)
Q Consensus 44 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 121 (454)
+...+.....+..+..++++++|+.. ++..+..+... .+++.+...+.+++..++..+..++.|++......+..-.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 33444444347789999999999998 66677766643 3444555555567899999999999999732110000000
Q ss_pred hcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 122 SQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 122 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
....+..+..++....+.+....++.+|++|...
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 0112444455554556788888999999999865
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.66 E-value=2 Score=39.28 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=90.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcC----CC------ChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCh
Q 012897 16 ATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMR----ED------YPQLQFEAAWALTNIASGTSENTKVVI-DHGAV 84 (454)
Q Consensus 16 a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 84 (454)
.+..|...+...+...++.+. .+++..|+..|.. .. +...+..++.||..+.. +......++ ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence 455555555554344566665 4567777776642 11 25778899999999998 444555544 45789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 85 PIFVKLLASPSDDVREQAVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 85 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
..+...|.++++.++..++..|..+|.... .. ...++ +..-+..++..+..+.+.+.+..++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999986543 21 22221 2234555666665455566666666666666
Q ss_pred cCCCC
Q 012897 153 CRGKP 157 (454)
Q Consensus 153 ~~~~~ 157 (454)
....+
T Consensus 183 v~~~~ 187 (386)
T 2bnx_A 183 ITPAE 187 (386)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 65543
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.23 E-value=1.8 Score=45.55 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=109.0
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHHhc---hhhhhhHHHHHHHHHHh
Q 012897 83 AVPIFVKLLAS----PSDDVREQAVWALGNVA----GDSPRCRDLVLSQGALIPLLAQLN---ERAKLSMLRNATWTLSN 151 (454)
Q Consensus 83 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~ 151 (454)
.+..+..++.+ .++.++..++.+++.+. ...+.+.. ..++.+.+.+. ...+.+-+..++.+|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 45556666665 46778888887777665 22221111 12344444432 33456778889999999
Q ss_pred hcCCCCCCChhhhhchHHHHHHhhcC-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhc--CCCCC
Q 012897 152 FCRGKPQPPFDQVRPALPALAQLVHS-------NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--GHPSP 222 (454)
Q Consensus 152 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~ 222 (454)
+-.. ..++.+.+++.. ....++..|+++|..++...+...+ +.++++. ...++
T Consensus 467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS 528 (1056)
T ss_dssp HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence 8753 467777777742 2356888999999999876554332 4466666 44677
Q ss_pred cchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCC
Q 012897 223 SVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGN 282 (454)
Q Consensus 223 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~ 282 (454)
++|..|+..|... ++.. ..+..+...+..+.+.+|+......|.+++...
T Consensus 529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 8999998877432 2212 235677888877668899999999999998743
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.60 E-value=0.29 Score=38.50 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=56.5
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH-DNNEIYEKAVKIL 415 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l 415 (454)
++..|..-++++++.++..++..|..+++.+... |...+.....++.+.++... .++.|++++..++
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 4667777888899999999999999999876542 56566666667777776654 6789999999999
Q ss_pred HHhcC
Q 012897 416 ETYWL 420 (454)
Q Consensus 416 ~~~~~ 420 (454)
+.+-.
T Consensus 121 ~~W~~ 125 (163)
T 1x5b_A 121 VEWSE 125 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=92.58 E-value=0.23 Score=38.39 Aligned_cols=92 Identities=10% Similarity=-0.041 Sum_probs=68.6
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~~ 367 (454)
.+..|..-+.+.++.++..|+..|-.+..++...+...+.+..++..|+.++.. .++.|+..++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 355677777888999999999999999998888877777777888889888863 56889999999998887654
Q ss_pred hhhhhccCCcccccHHHHHHHHhcc
Q 012897 368 EAEKNMGTATADVNQYAQLVEEAEG 392 (454)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~g~ 392 (454)
.... ........++..|.
T Consensus 129 ~~~p-------~i~~~Y~~Lk~~Gi 146 (149)
T 3g2s_A 129 PEEV-------KIAEAYQMLKKQGI 146 (149)
T ss_dssp TTCH-------HHHHHHHHHHHTTC
T ss_pred CCCc-------hHHHHHHHHHHCcC
Confidence 3322 22334455555554
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.49 E-value=4.5 Score=34.41 Aligned_cols=141 Identities=14% Similarity=0.170 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhc
Q 012897 266 SIKKEACWTISNITAG-NRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDL 344 (454)
Q Consensus 266 ~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~ 344 (454)
..+.....-+..++.. ++... .++++.++.+..+.+.++|+..+..+...+... .+... .+++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~-----~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLP-----HVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHH
Confidence 4566666666665543 33222 345667777766778999999999998887532 22222 367888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhh-hccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 345 FVCPDPRIVTVCLEGLENILKVGEAEK-NMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 345 l~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
++++++.+.+.++.+..++++..=..- +.++.....+.....+.. .-..+.++..+.|..++-.|.+.+++.-
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 999999999999998888866422111 000000001223333322 2355666778899999999999999965
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.04 E-value=0.26 Score=37.67 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=55.8
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILE 416 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 416 (454)
++..|..-+.++++.++..++..|..+++.+... |...+.....++.+..+....++.|++++..++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~ 110 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV 110 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5777777888899999999999999999876542 4545555556666667766788999999999998
Q ss_pred HhcC
Q 012897 417 TYWL 420 (454)
Q Consensus 417 ~~~~ 420 (454)
.+-.
T Consensus 111 ~W~~ 114 (140)
T 3ldz_A 111 EWTD 114 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.02 E-value=0.39 Score=37.07 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=58.6
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhcC------CCHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSH------DNNEIYEK 410 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~ 410 (454)
++..|..-++++++.++..++..|..+++.+... |...+.....++.|.++... .++.|+++
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 106 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR 106 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence 4677777888999999999999999999876542 66777777788888887653 47899999
Q ss_pred HHHHHHHhcC
Q 012897 411 AVKILETYWL 420 (454)
Q Consensus 411 a~~~l~~~~~ 420 (454)
+..+++.+-.
T Consensus 107 il~li~~W~~ 116 (148)
T 1mhq_A 107 VIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=91.89 E-value=0.47 Score=37.66 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=58.3
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK 410 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~ 410 (454)
++..|.+-++++++.++..++..|..+++.+... |...+.....++.|.++.. ..+..|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4677778888999999999999999999986542 6667777777888888864 346899999
Q ss_pred HHHHHHHhcC
Q 012897 411 AVKILETYWL 420 (454)
Q Consensus 411 a~~~l~~~~~ 420 (454)
+..+++.+-.
T Consensus 119 il~li~~W~~ 128 (171)
T 1juq_A 119 VIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988664
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.86 E-value=0.28 Score=37.50 Aligned_cols=75 Identities=4% Similarity=-0.023 Sum_probs=58.2
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGE 368 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~ 368 (454)
++..+..-+.++++.++..|+..|-.+..++.......+.+..++..|..+++..++.|+..++..+........
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 355566777788889999999999888888877766666566677777777777889999999998888765443
No 139
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.76 E-value=1.3 Score=40.26 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhh-h
Q 012897 292 AGLVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEA-E 370 (454)
Q Consensus 292 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~-~ 370 (454)
.++++.++.+..+.+.++|+.++..|...+.. ..+... .+++.|..++++.++.+.+.++.+..+++...=. .
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999988888999999999999888763 222222 2577888888889999999988888887643211 1
Q ss_pred hhccCCcccccHHHHHHHHhccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 012897 371 KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 371 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 419 (454)
.+.++.....+.....+.. .-..+..+..+.|..++-.|.+.+++.-
T Consensus 136 ~~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 1100000001123333322 2355666778899999999999999965
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.58 E-value=0.44 Score=36.80 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=58.2
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHhc------CCCHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQS------HDNNEIYEK 410 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~ 410 (454)
++..|..-+.++++.++..++..|..+++.+... |...+....+++.|.++.. ..++.|+++
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 116 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK 116 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence 5677777888899999999999999999876543 6666777777788888764 367999999
Q ss_pred HHHHHHHhcC
Q 012897 411 AVKILETYWL 420 (454)
Q Consensus 411 a~~~l~~~~~ 420 (454)
+..++..+-.
T Consensus 117 il~li~~W~~ 126 (149)
T 3g2s_A 117 ILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 141
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.47 E-value=0.53 Score=36.34 Aligned_cols=73 Identities=8% Similarity=-0.087 Sum_probs=60.0
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~ 366 (454)
++..+..-++++++.++..|+..|-.+..++...+...+.+..++..|+.++.. .++.|+..++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355677777888999999999999999998888777777777889999988874 4678999998888887654
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=90.90 E-value=0.65 Score=35.21 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=54.9
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHh-ccHHHHHHHhcCC--------CHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEA-EGLEKIENLQSHD--------NNEI 407 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~l~~l~~~~--------~~~v 407 (454)
+++.|..-|+.+++.++.++|.+|..+++.+... |...+++. ..++.+.+....+ ...|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 5788888999999999999999999999765432 55554433 2233333333222 2779
Q ss_pred HHHHHHHHHHhcCcCCCc
Q 012897 408 YEKAVKILETYWLEEDDE 425 (454)
Q Consensus 408 ~~~a~~~l~~~~~~~~~~ 425 (454)
+.+|..+++-+++.+...
T Consensus 118 R~~AkEl~~ll~d~~~~~ 135 (140)
T 1vdy_A 118 RETAHETISAIFSEENGS 135 (140)
T ss_dssp HHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHhCcCCCC
Confidence 999999999999877654
No 143
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.46 E-value=8.4 Score=35.04 Aligned_cols=233 Identities=13% Similarity=0.046 Sum_probs=106.6
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
+...+..++..++..|+.+++++++.=|...-.+|..+-+.-...|..+... +-..+.+.+.......-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 3334555666788899999999999999999998888765444444433221 122333333222211222234444444
Q ss_pred hcCCCCC-CChhhhhchHHHHHHhhcCCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhh-
Q 012897 152 FCRGKPQ-PPFDQVRPALPALAQLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIP- 227 (454)
Q Consensus 152 l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~- 227 (454)
+..+-.. .......-...+|+.+-....-. --.....|+......++.....++ ..+++. +.....+.
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi--------~~LLk~WP~tns~Kev 269 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV--------MALLKYWPKTHSPKEV 269 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH--------HHHHHTCCSSCHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH--------HHHHHhCCCCCcHHHH
Confidence 4444311 12222222333444444433221 112233333333333332222111 112211 11111111
Q ss_pred -HHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH-----HHHhcCCHHHHHHHHhCCChHHHHH
Q 012897 228 -ALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI-----SNITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 228 -a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L-----~nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
-+.-+..+....+ ..... +...+...+..++.++ +.+|-+.|+... .++...+.. .++|.+..
T Consensus 270 lFL~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~--------~IlPii~p 339 (403)
T 3fga_B 270 MFLNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFP 339 (403)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHH--------HHHHHHHH
Confidence 1222333332211 11111 1123556677777788 877877776543 222222222 23444444
Q ss_pred Hh----hhc-chhhHHHHHHHHHHhcCC
Q 012897 301 LL----QNA-EFDIKKEAAWAISNATSG 323 (454)
Q Consensus 301 ll----~~~-~~~v~~~a~~aL~~l~~~ 323 (454)
.+ +.. +..++..+..++.-+...
T Consensus 340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 340 SLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 33 333 677888888777776554
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.30 E-value=1.1 Score=38.66 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=88.7
Q ss_pred chhhHHHHHhHhhccCccchhhhh-ccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh--CCChHHHHH
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCII-TYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID--AGLVGPLVN 300 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L~~ 300 (454)
....|+..|.-++..-....+.+- +...+..|+ +.... .+.+++.|+.+++.+.+.+|..+..+.+ ..++..++.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 456677777777754333333222 223344444 22344 6679999999999999999999887774 456666666
Q ss_pred Hhhh-------cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCC--CHHHHHHHHHHHHHHHH
Q 012897 301 LLQN-------AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCP--DPRIVTVCLEGLENILK 365 (454)
Q Consensus 301 ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~--~~~v~~~al~~L~~l~~ 365 (454)
-+.. ....+++.-+.+|.-|+.... .. ....+..|.+++... ++.++..++..+..++.
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 5543 233566777788888877531 11 134667777777766 88999999999999986
No 145
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.95 E-value=7.8 Score=35.10 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhh
Q 012897 12 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 91 (454)
Q Consensus 12 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL 91 (454)
.+...++.+.+++... .+. .-.++++.++.+-.+++ .++|.-.+..|...+....+... .+++.|..+|
T Consensus 41 ~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4666666666665442 111 11346777777777766 77777777777776653333322 2355666666
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 012897 92 ASPSDDVREQAVWALGNV 109 (454)
Q Consensus 92 ~~~~~~v~~~a~~~L~~l 109 (454)
.++++.+...++.+.+++
T Consensus 110 ~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQL 127 (386)
T ss_dssp TCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 666777777776666665
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.34 E-value=0.63 Score=36.93 Aligned_cols=73 Identities=11% Similarity=-0.031 Sum_probs=58.0
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC------CCHHHHHHHHHHHHHHHHh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC------PDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~------~~~~v~~~al~~L~~l~~~ 366 (454)
++..|..-+.++++.++..|+..|-.+..++...+...+.+..++..|+.++.. .++.|+..++..+......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345677778888999999999999999998777766666777788888888863 4578999998888887643
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.19 E-value=0.64 Score=36.57 Aligned_cols=73 Identities=3% Similarity=-0.044 Sum_probs=56.8
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCC-CCHHHHHHHHHHHHHHHHh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVC-PDPRIVTVCLEGLENILKV 366 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~ 366 (454)
++..|..-+.++++.++..|+..|-.+..++...+...+.+..++..|+.++.. .++.|+..++..+......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345577777888999999999999999998877777666666777777777764 5678999988877776543
No 148
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=87.32 E-value=14 Score=34.10 Aligned_cols=233 Identities=14% Similarity=0.059 Sum_probs=113.1
Q ss_pred chhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHh
Q 012897 72 SENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSN 151 (454)
Q Consensus 72 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 151 (454)
+...+..++..++..|+.+++++++.-|...-.+|..+-..-...|..+... +-..+.+.+.......-....+.+++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3445666677889999999999999999999999988764433344433321 123344444232223334455666666
Q ss_pred hcCCCCCC-ChhhhhchHHHHHHhhcCCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhh-
Q 012897 152 FCRGKPQP-PFDQVRPALPALAQLVHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIP- 227 (454)
Q Consensus 152 l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~- 227 (454)
+..+-..+ ......-....|+.+.....-.. -.....|+......++.....++ . .+++. +.......
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~---~LLk~WP~tns~Kev 302 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----M---ALLKYWPKTHSPKEV 302 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----H---HHHHTCCSSCHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----H---HHHHhCCCCCchHHH
Confidence 66554222 22322333444555554433221 12233344333333332222111 1 22221 11111222
Q ss_pred -HHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHH-----HHhcCCHHHHHHHHhCCChHHHHH
Q 012897 228 -ALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTIS-----NITAGNRDQIQAVIDAGLVGPLVN 300 (454)
Q Consensus 228 -a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~i~~L~~ 300 (454)
-+.-|..+....+ .....+ ...+...+..++.++ +.+|-+.|+.... ++...+.. .++|.+..
T Consensus 303 lFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p 372 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFP 372 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHH
Confidence 2222333332211 111111 123556677777887 8778777764432 22222211 23455555
Q ss_pred Hhhh----c-chhhHHHHHHHHHHhcCC
Q 012897 301 LLQN----A-EFDIKKEAAWAISNATSG 323 (454)
Q Consensus 301 ll~~----~-~~~v~~~a~~aL~~l~~~ 323 (454)
.+.. . +..++..+..++.-+...
T Consensus 373 ~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 373 SLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4422 2 566777777777665554
No 149
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.27 E-value=2.8 Score=36.31 Aligned_cols=149 Identities=11% Similarity=0.097 Sum_probs=93.5
Q ss_pred HHHHHHhhcCC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc
Q 012897 168 LPALAQLVHSN------DEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD 240 (454)
Q Consensus 168 l~~l~~ll~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 240 (454)
+..+..++.++ +......++..|..++.......+..- +..++..|+ +.....+.+++.|.++|+...+++|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 34445555554 444577788888888765443333222 334444444 3344556799999999999999999
Q ss_pred cchhhhhcc--CChHHHHHhhcC----C--cchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhc--chhhH
Q 012897 241 FQTQCIITY--GALPYLLGLLTH----S--HKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNA--EFDIK 310 (454)
Q Consensus 241 ~~~~~~~~~--~~l~~L~~~L~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~ 310 (454)
.....+.+. .++..+..-|.. . ....+.+.-+.+|.-|...+.. + ....+..|.+++... ++.++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~~k 177 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQLQ 177 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHHHH
Confidence 877766542 344444433322 1 1335667777777777765421 1 134667888888777 89999
Q ss_pred HHHHHHHHHhcC
Q 012897 311 KEAAWAISNATS 322 (454)
Q Consensus 311 ~~a~~aL~~l~~ 322 (454)
..++..+..+..
T Consensus 178 ~Kvl~li~d~f~ 189 (315)
T 3qml_C 178 IKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999888763
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.45 E-value=2.1 Score=35.71 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=54.5
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL 415 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l 415 (454)
++..|..-+.++++.++..++..|..+++.+... |...+.....++.|..+. ...+++|++++..++
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li 113 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI 113 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4677778888999999999999999999876642 455555555556666554 456789999999999
Q ss_pred HHhcC
Q 012897 416 ETYWL 420 (454)
Q Consensus 416 ~~~~~ 420 (454)
..+-.
T Consensus 114 ~~W~~ 118 (226)
T 3zyq_A 114 QAWAH 118 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.35 E-value=2.4 Score=33.03 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred CcHHHhhccC-CCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 012897 337 CIKPLCDLFV-CPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQS---HDNNEIYEKA 411 (454)
Q Consensus 337 ~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a 411 (454)
++..|..-++ .+++.++..|+..|..+++.+... |...+.....++. |.++.. .++..|++++
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~ki 121 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKV 121 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 4666777776 588999999999999999876432 5666666666776 566552 3457899999
Q ss_pred HHHHHHhcC
Q 012897 412 VKILETYWL 420 (454)
Q Consensus 412 ~~~l~~~~~ 420 (454)
..+++.+-.
T Consensus 122 l~li~~W~~ 130 (157)
T 1elk_A 122 LNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.27 E-value=2.3 Score=35.36 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=54.0
Q ss_pred CcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHH
Q 012897 337 CIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKIL 415 (454)
Q Consensus 337 ~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l 415 (454)
++..|..-+.++++.++..++..|..+++.+... |...+.....++.|..+. ...+.+|++++..++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4666777788899999999999999999886542 445555555666666654 356789999999998
Q ss_pred HHhcC
Q 012897 416 ETYWL 420 (454)
Q Consensus 416 ~~~~~ 420 (454)
+.+-.
T Consensus 111 ~~W~~ 115 (220)
T 1dvp_A 111 QTWAY 115 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 153
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.04 E-value=7 Score=40.63 Aligned_cols=186 Identities=14% Similarity=0.090 Sum_probs=111.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhch---hhhhhHHHHHHHHHH--hhcCCCC
Q 012897 83 AVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNE---RAKLSMLRNATWTLS--NFCRGKP 157 (454)
Q Consensus 83 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~l~~~~~ 157 (454)
++.-|+++--+...++|..|-.+|......-+..+..+ ++.+++.|.. +.+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 45666666677889999999999999886655555554 7788888855 445556666666554 11110 1
Q ss_pred CCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCC------------------------hHHHHHH---------
Q 012897 158 QPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDGT------------------------NDKIQAV--------- 204 (454)
Q Consensus 158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------------------------~~~~~~~--------- 204 (454)
.........+++.++.....+.+.++..+-.+...+.... .......
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2344555677788888877777777655544433332200 0000100
Q ss_pred -HH---hCcHHHHHHhc-CCCC--CcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHH
Q 012897 205 -IE---AGVCPRLVELL-GHPS--PSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISN 277 (454)
Q Consensus 205 -~~---~~~i~~L~~ll-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~n 277 (454)
.. .++...++... .... +.....++..|.++....+ .......+..+++.+.++ ++.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 00 12333344554 2344 6666667777555553222 233445678899999998 99999999988866
Q ss_pred Hh
Q 012897 278 IT 279 (454)
Q Consensus 278 l~ 279 (454)
+.
T Consensus 363 il 364 (997)
T 1vsy_5 363 TC 364 (997)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=82.63 E-value=8.5 Score=39.99 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=117.9
Q ss_pred hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc----CCChhHHHHHHHHHH-----HhccC
Q 012897 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH----SNDEEVLTDACWALS-----YLSDG 196 (454)
Q Consensus 126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~a~~~L~-----~l~~~ 196 (454)
+..|+++. .+.-.+++..|-.+|......-+... .-++|.+++.|+ ..+.+-..-|+.+|. ..+..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~----~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSY----GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHH----HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHH----HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 45566655 56678899999999999886543333 334555555553 456666666776654 12222
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCc-cchhhhhccCChHHHHHhhcCCcchhHHHHHHHHH
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDD-FQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTI 275 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L 275 (454)
+.... ..+++.++.....+++.++.-+-.+...+..... ...-..++...+ ..+..+ +..+- .+....
T Consensus 210 d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~ 278 (997)
T 1vsy_5 210 DYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAV 278 (997)
T ss_dssp CHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHH
T ss_pred ChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHH
Confidence 22221 2456677777777778887776666555543221 110011221121 223322 22211 111111
Q ss_pred HHHhcCCHHHHHHHHh--CCChHHHHHHhhh-cc--hhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCH
Q 012897 276 SNITAGNRDQIQAVID--AGLVGPLVNLLQN-AE--FDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDP 350 (454)
Q Consensus 276 ~nl~~~~~~~~~~l~~--~~~i~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~ 350 (454)
.... ...+....+ .++...+++..+. .+ +.....++..+.++....+.. ....++..+++.+.+++|
T Consensus 279 ~~~~---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~-----~~~~~v~~~~~~l~~dhp 350 (997)
T 1vsy_5 279 KLAK---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESK-----PDKRAVFSIISQISTKHP 350 (997)
T ss_dssp HHHT---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCC-----CCHHHHHHHHGGGGGCCH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHhhcCCCH
Confidence 1111 111111111 2345556666633 36 778888888867776432211 111246778888999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 012897 351 RIVTVCLEGLENILKV 366 (454)
Q Consensus 351 ~v~~~al~~L~~l~~~ 366 (454)
.++..++.++..++..
T Consensus 351 ~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 351 EIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.97 E-value=2.2 Score=35.61 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=56.3
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~ 367 (454)
++..|..-+.+.++.++..|+..|-.+..+........+.+..+++.|..+++ ..++.|+..++..+.......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 35556777778899999999999999988877766666666667777777665 356789999998888886543
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=76.07 E-value=6 Score=30.71 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=55.8
Q ss_pred ChHHHHHHhh-hcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HhhccCC---CCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQ-NAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKP-LCDLFVC---PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~~l~~---~~~~v~~~al~~L~~l~~~~ 367 (454)
++..|..-++ .+++.++..|+..|-.+..++.......+.+..+++. |+.++.. .+..|+..++..+.......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 3455667776 4688999999999999999887777777777777877 7777742 34589999988888876543
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.58 E-value=7 Score=32.38 Aligned_cols=73 Identities=4% Similarity=-0.022 Sum_probs=53.7
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccC-CCCHHHHHHHHHHHHHHHHhh
Q 012897 295 VGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFV-CPDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 295 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~-~~~~~v~~~al~~L~~l~~~~ 367 (454)
+..|..-+.++++.++..|+..|-.+..+........+.+..+++.|..+++ ..++.|+..++..+.......
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 4456666777889999999999998888766655555555567777777665 356789998888888876543
No 158
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=67.85 E-value=32 Score=25.66 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=62.2
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHHhhhhhhhc
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNM 373 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~~~~~~~~~ 373 (454)
+++.|+..+++.+..+...++..|...- .. +++.+.+.+.+.|..-+ .++|..++...+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWK---YWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH---
Confidence 5778999999999999888888887542 22 35556667777776644 34455554332221
Q ss_pred cCCcccccHHHHHHHHhccHHHHHHHhcCC-----CHHHHHHHHHHHHHhcC
Q 012897 374 GTATADVNQYAQLVEEAEGLEKIENLQSHD-----NNEIYEKAVKILETYWL 420 (454)
Q Consensus 374 ~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~ 420 (454)
....+ ...|.++...+ .+++...|..++++||.
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~ 130 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYP 130 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC-
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcc
Confidence 12233 35577777664 67899999999999986
No 159
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=67.59 E-value=78 Score=29.29 Aligned_cols=190 Identities=11% Similarity=0.035 Sum_probs=97.9
Q ss_pred hhhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCC-CCCcchhhHHHHHhHhhccCcc
Q 012897 163 QVRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGH-PSPSVLIPALRTVGNIVTGDDF 241 (454)
Q Consensus 163 ~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 241 (454)
....++-.|+.+++++|+.-|...-.+|..+-...... +.++...+-..+..++-. ....-....+.+++.+..+...
T Consensus 159 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~ 237 (449)
T 2npp_B 159 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 237 (449)
T ss_dssp SCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTT-HHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCC
Confidence 34678889999999999999988888887765432222 223332333344455432 2233455678888888765321
Q ss_pred -chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHh
Q 012897 242 -QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNA 320 (454)
Q Consensus 242 -~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 320 (454)
..+. -..=....|+.+.+...-......-..++..+....+..... ++..|++.--..+..-...-+.-|..+
T Consensus 238 PLKee-hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~eleei 311 (449)
T 2npp_B 238 PLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELEEI 311 (449)
T ss_dssp SCCHH-HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 1110 000113445555555422333344445555554433322211 122232222222222222233344455
Q ss_pred cCCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH
Q 012897 321 TSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL 360 (454)
Q Consensus 321 ~~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L 360 (454)
+...++.....+. .-+...|..++++++.+|.+.|+...
T Consensus 312 le~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 312 LDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp HTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5554554443322 23577778888899989888887543
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.64 E-value=18 Score=27.36 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=51.1
Q ss_pred ChHHHHHHhhhcchhhHHHHHHHHHHhcCCCCHHHHHHHHHcC-CcHHHhhccCCCC--------HHHHHHHHHHHHHHH
Q 012897 294 LVGPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREG-CIKPLCDLFVCPD--------PRIVTVCLEGLENIL 364 (454)
Q Consensus 294 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~~l~~~~--------~~v~~~al~~L~~l~ 364 (454)
+++.|.+-++.+++.++..|+..|..++..+.+.....+.+.- .|..+.+.--.++ ..|+..|-.++.-|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999999999988877766532 2333333322222 247777777777665
Q ss_pred H
Q 012897 365 K 365 (454)
Q Consensus 365 ~ 365 (454)
.
T Consensus 130 d 130 (140)
T 1vdy_A 130 S 130 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=65.34 E-value=31 Score=31.27 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=49.7
Q ss_pred hhhHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhh
Q 012897 73 ENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNF 152 (454)
Q Consensus 73 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l 152 (454)
...+..++..++..|+.+++++++.-|.....+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 33455566678899999999999999999998888876443344443322 12233444443322223334455555555
Q ss_pred cCCC
Q 012897 153 CRGK 156 (454)
Q Consensus 153 ~~~~ 156 (454)
..+.
T Consensus 244 Ingf 247 (392)
T 2jak_A 244 INGF 247 (392)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 5554
No 162
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=60.94 E-value=11 Score=29.06 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=49.9
Q ss_pred CcHHHhhccCC-CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHH-HHHHhc---CCCHHHHHHH
Q 012897 337 CIKPLCDLFVC-PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEK-IENLQS---HDNNEIYEKA 411 (454)
Q Consensus 337 ~i~~L~~~l~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a 411 (454)
++..|..-+.. .++.++..|+..|..+++.+... |...+....++.. |.++.. ..+.+|++++
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~------------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~ki 121 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS------------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRI 121 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHH
Confidence 46666666663 57888888999999999876543 4555554455543 555543 3456899999
Q ss_pred HHHHHHhcC
Q 012897 412 VKILETYWL 420 (454)
Q Consensus 412 ~~~l~~~~~ 420 (454)
..++..+-.
T Consensus 122 l~li~~Wa~ 130 (152)
T 3rru_A 122 LNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998765
No 163
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.84 E-value=53 Score=29.75 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=94.1
Q ss_pred hhchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCC-CCcchhhHHHHHhHhhccCc-c
Q 012897 164 VRPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHP-SPSVLIPALRTVGNIVTGDD-F 241 (454)
Q Consensus 164 ~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~ 241 (454)
...++..|+.+++++|+.-|.....+|..+-...... +..+...+-..+..++... ...-....+.+++.+..+.. .
T Consensus 172 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~-R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~P 250 (392)
T 2jak_A 172 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250 (392)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC
Confidence 4568888999999999999988888887764332222 2233334444555655433 23334567788888776543 1
Q ss_pred chhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhc
Q 012897 242 QTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNAT 321 (454)
Q Consensus 242 ~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 321 (454)
.++. -..=....|+.+.+...-......-..++..+...++..... ++..|++.--..+..-...-+.-|..+.
T Consensus 251 LKee-hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~eleeiL 324 (392)
T 2jak_A 251 LKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELEEIL 324 (392)
T ss_dssp CCHH-HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred CcHH-HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-----HHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 1110 000023445555554422223334444544444332222211 1222222221122211122223334444
Q ss_pred CCCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHH
Q 012897 322 SGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEG 359 (454)
Q Consensus 322 ~~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~ 359 (454)
...++.....+. ..+...+..++++++.+|.+.|+..
T Consensus 325 e~~~~~~f~~i~-~~lF~~la~ci~S~hfqVAErAL~~ 361 (392)
T 2jak_A 325 DVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYY 361 (392)
T ss_dssp HTCCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHGG
T ss_pred HhCCHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 433444433321 2356677788888888888887644
No 164
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.86 E-value=29 Score=31.76 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=65.4
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-------hhhhhhHHHHHHHHHHhhcCCC--CCCC
Q 012897 90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRNATWTLSNFCRGK--PQPP 160 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 160 (454)
.+.+..+..+-.++++++|+.......+..+........+++.+. ...+..++..++.++.|++... ....
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~ 349 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 349 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 344567888999999999997655423333322222445555542 2235678888888888887643 1111
Q ss_pred hhhhhchHHHHHHhhc---------CCChhHHHHHHHHHHHhccCCh
Q 012897 161 FDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGTN 198 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~---------~~~~~v~~~a~~~L~~l~~~~~ 198 (454)
...+..+..++. ..+++....++.+|+++....+
T Consensus 350 ----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 233344555554 3588899999999999986443
No 165
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=54.22 E-value=16 Score=28.06 Aligned_cols=74 Identities=12% Similarity=-0.017 Sum_probs=52.0
Q ss_pred ChHHHHHHhhh-cchhhHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH-HHhhccCC---CCHHHHHHHHHHHHHHHHhh
Q 012897 294 LVGPLVNLLQN-AEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIK-PLCDLFVC---PDPRIVTVCLEGLENILKVG 367 (454)
Q Consensus 294 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-~L~~~l~~---~~~~v~~~al~~L~~l~~~~ 367 (454)
++..|..-+.. .++.++..|+..|-.+..++...+...+.+..++. .|+.+++. ....|+..++..+.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 34456666664 47778888899998888888877766666555665 36666653 23479999999888887543
No 166
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=53.73 E-value=25 Score=31.45 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=63.7
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-------hhhhhhHHHHHHHHHHhhcCCC--CCCC
Q 012897 90 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRNATWTLSNFCRGK--PQPP 160 (454)
Q Consensus 90 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~--~~~~ 160 (454)
.+.+..+..+-.++++++|+.......+..+........+++.+. ...+..++..+...+.|++... ....
T Consensus 207 ~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~ 286 (362)
T 3l3f_X 207 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 286 (362)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred hcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 334566888999999999997655423333322111233444331 2335678888888888887643 1111
Q ss_pred hhhhhchHHHHHHhhc---------CCChhHHHHHHHHHHHhccCC
Q 012897 161 FDQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDGT 197 (454)
Q Consensus 161 ~~~~~~~l~~l~~ll~---------~~~~~v~~~a~~~L~~l~~~~ 197 (454)
....+.+..++. ..+++....++.+|+++....
T Consensus 287 ----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 ----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp ----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 233445555554 358899999999999998543
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=51.62 E-value=53 Score=27.72 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHHhc-------hhhhhhHHHHHHHHHHhhcCCC-C-CCCh
Q 012897 91 LASPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALIPLLAQLN-------ERAKLSMLRNATWTLSNFCRGK-P-QPPF 161 (454)
Q Consensus 91 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~~~~~~a~~~L~~l~~~~-~-~~~~ 161 (454)
+.+.++..+-.++++++|+..+....+..+........++..+. ...+..++..+...+.|++... . ...
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~- 177 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 177 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC-
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch-
Confidence 34556788999999999997665533444433222333444431 1246678888888888887643 1 111
Q ss_pred hhhhchHHHHHHhhc---------CCChhHHHHHHHHHHHhccC
Q 012897 162 DQVRPALPALAQLVH---------SNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 162 ~~~~~~l~~l~~ll~---------~~~~~v~~~a~~~L~~l~~~ 196 (454)
......+..++. ..+++....++.+++++...
T Consensus 178 ---~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 178 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp ---TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 122333444443 23778888888899888753
No 168
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.98 E-value=65 Score=26.40 Aligned_cols=134 Identities=8% Similarity=-0.089 Sum_probs=75.3
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhc-CCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 012897 135 ERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVH-SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 213 (454)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 213 (454)
.++.-+.+..++..+....... ....++.+-.++. -++-.+.-..+.++..+....+. .+.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~--------~~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT--------ELPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG--------GHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH--------HHHHHH
Confidence 4445566666666666543211 0122333333443 34555555444555554433222 234557
Q ss_pred HHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHh
Q 012897 214 VELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVID 291 (454)
Q Consensus 214 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 291 (454)
.....+++.-++..|+..+..... ..... ..++.+-..+.++ +.-|+....|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~-----~~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQD-----LLKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHH-----HHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHH-----HHHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 788888888787777664422221 11111 1234444466667 8899999999999999988887666553
No 169
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=50.93 E-value=1.4e+02 Score=27.03 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=122.0
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCC-CcchhhHHHHHhHhhccCcc-c
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPS-PSVLIPALRTVGNIVTGDDF-Q 242 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-~ 242 (454)
..++-.|+.+++++|+.-|...-.+|.++-...... +.++...+-..+..++-..+ ..-....+.+++.+..+... .
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~-R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL-RAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 557788999999999999998888888765433322 22333333344444443322 22344567777777765421 1
Q ss_pred hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 243 TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 243 ~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
++. -..=....|+.+-+.+.-......-..++..+...++..... ++..|++.--..++.-...-+.-+..++.
T Consensus 207 kee-hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~WP~tns~KevlFL~Ele~iLe 280 (403)
T 3fga_B 207 KEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYWPKTHSPKEVMFLNELEEILD 280 (403)
T ss_dssp CHH-HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 110 000012445555555423333344555555555433332211 12222222222232222233344555555
Q ss_pred CCCHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHH-----HHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHH
Q 012897 323 GGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGL-----ENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIE 397 (454)
Q Consensus 323 ~~~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 397 (454)
..++.....+. ..+...+..++.+++.+|.+.|+... .+++.... ...... .++.|.
T Consensus 281 ~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~------------~~IlPi-----i~p~L~ 342 (403)
T 3fga_B 281 VIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA------------AKILPI-----MFPSLY 342 (403)
T ss_dssp TCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH------------HHHHHH-----HHHHHH
T ss_pred hCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhH------------HHHHHH-----HHHHHH
Confidence 55555443322 23677788889999999999888554 22222111 001222 235555
Q ss_pred HH-hcCCCHHHHHHHHHHHHHhcCcC
Q 012897 398 NL-QSHDNNEIYEKAVKILETYWLEE 422 (454)
Q Consensus 398 ~l-~~~~~~~v~~~a~~~l~~~~~~~ 422 (454)
+. .+|=|+.|+..+..++..+.+-+
T Consensus 343 ~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 343 RNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 43 56778999999999988776543
No 170
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=49.11 E-value=19 Score=30.48 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHHHhcCCCch-hhHHHHhCCChHHHHHhhC----C----CCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 012897 53 YPQLQFEAAWALTNIASGTSE-NTKVVIDHGAVPIFVKLLA----S----PSDDVREQAVWALGNVAGDSPRCRDLVLSQ 123 (454)
Q Consensus 53 ~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL~----~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 123 (454)
.+..+..++++++|+.. ++. .+..+........++..+. + ++..++..+...+.|++......+. ..
T Consensus 103 ~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CT
T ss_pred chhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hH
Confidence 38899999999999998 444 4555544323344444332 1 3567888888899998732110000 11
Q ss_pred CChHHHHHHhch--------hhhhhHHHHHHHHHHhhcCC
Q 012897 124 GALIPLLAQLNE--------RAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 124 ~~i~~l~~~l~~--------~~~~~~~~~a~~~L~~l~~~ 155 (454)
.....+++.+.. ..+++....++.+++++...
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 223445555532 24778888888899988854
No 171
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=47.03 E-value=1.1e+02 Score=24.55 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=70.5
Q ss_pred ChHHHHHHhch-----hhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC---ChhHHHHHHHHHHHhccC
Q 012897 125 ALIPLLAQLNE-----RAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN---DEEVLTDACWALSYLSDG 196 (454)
Q Consensus 125 ~i~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~a~~~L~~l~~~ 196 (454)
.+|.+++.+.+ -.+.......+.....|..++...-......++|.++.++-.. ...+|..|...+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 35555555532 1256677778888888888876666667788888888776432 237999999999999854
Q ss_pred ChHHHHHHHHhCcHHHHHHhcCCCC--CcchhhHHHHHhHhh
Q 012897 197 TNDKIQAVIEAGVCPRLVELLGHPS--PSVLIPALRTVGNIV 236 (454)
Q Consensus 197 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~ 236 (454)
...... -+...+...+.+.+.+++ .....-|+..|..+.
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 222111 223456667777776654 334555666665554
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=43.55 E-value=46 Score=30.46 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=65.5
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCcHHHHHH-cCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcCCCchhhHH
Q 012897 6 WSDDSSLQLEATTQFRKLLSIERSPPIEEVIQ-SGVVPRFVEFLMRE-------DYPQLQFEAAWALTNIASGTSENTKV 77 (454)
Q Consensus 6 ~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~l~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~ 77 (454)
.+..+..++.+++.+.++.+.. .....++. ......+++.+... .+..++..++..+.|++......+.
T Consensus 272 ~~~~~an~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS-
T ss_pred CCCChhHHHHHHHHHHHhcCCc--chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc-
Confidence 3557899999999999999874 43333332 22345556555321 1256888889999998862111110
Q ss_pred HHhCCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhCCChhh
Q 012897 78 VIDHGAVPIFVKLLA---------SPSDDVREQAVWALGNVAGDSPRC 116 (454)
Q Consensus 78 ~~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~ 116 (454)
+......+..++. ..+++....++-+|++|....+..
T Consensus 349 --~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~ 394 (425)
T 3pst_A 349 --DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 394 (425)
T ss_dssp --CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred --hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 1233445555554 247788888999999998544433
No 173
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=39.08 E-value=2.4e+02 Score=26.27 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=68.8
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCCh-h-HHHHHHHHHHHhcCCCchhhHHH
Q 012897 1 MVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYP-Q-LQFEAAWALTNIASGTSENTKVV 78 (454)
Q Consensus 1 lv~~L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~-v~~~a~~~L~~l~~~~~~~~~~~ 78 (454)
|+++|+|+++.+...|++.+. . +.+...+...+++..|++++-..+.+ . +....=.++..++. ++=.++.+
T Consensus 121 i~~aL~S~~~~l~~~~ckVI~----~--s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-deLirrri 193 (500)
T 3vld_A 121 LVKALRSEIDPLKVAACRVIE----N--SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-DELIRRRL 193 (500)
T ss_dssp HHHHHTSSCHHHHHHHHHHHH----T--CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHhc----c--cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-hHHHHHHH
Confidence 356788999999999998887 2 56677788889999999998887633 2 44444455555654 44456666
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 012897 79 IDHGAVPIFVKLLASPSDDVREQAVWALGNVA 110 (454)
Q Consensus 79 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 110 (454)
.+ ...+.+...=++.++.+....+..+.-+.
T Consensus 194 l~-nnl~lL~~vK~~~~~i~~sRLLdll~il~ 224 (500)
T 3vld_A 194 FD-NNLPYLVSVKGRMETVSFVRLIDFLTIEF 224 (500)
T ss_dssp HT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HH-HhHHHHHHHhcCCCceeHHHHHHHHHHHh
Confidence 65 45666666555566666666666665554
No 174
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=37.86 E-value=70 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHhccHHHHHHHhcC-CCHHHHHHHHHHHHHhcCc
Q 012897 384 AQLVEEAEGLEKIENLQSH-DNNEIYEKAVKILETYWLE 421 (454)
Q Consensus 384 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 421 (454)
...|++.++=..+..|..| ++++|+..|..++..+-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6678888888889999876 9999999999999987753
No 175
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.25 E-value=45 Score=29.85 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhc----C---CcchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 012897 218 GHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLT----H---SHKKSIKKEACWTISNITAGNRDQIQAVI 290 (454)
Q Consensus 218 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 290 (454)
....+..+.-++++++|+..........+.+......+++.+. . ..+..++..++..+-|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 3445667888999999998755422322222112233333331 1 1155788888888889986211100 0
Q ss_pred hCCChHHHHHHhh---------hcchhhHHHHHHHHHHhcC
Q 012897 291 DAGLVGPLVNLLQ---------NAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 291 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~ 322 (454)
+......+.+++. ..+++....++.||+++..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1223455666665 2478899999999999985
No 176
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=33.93 E-value=1.4e+02 Score=24.73 Aligned_cols=135 Identities=12% Similarity=0.129 Sum_probs=72.7
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCcHHHHHHcCCHHHHHHhhcCCCChhHHHHH---HHHHHHhcCCCchhhHHHHhC
Q 012897 5 VWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDYPQLQFEA---AWALTNIASGTSENTKVVIDH 81 (454)
Q Consensus 5 L~s~d~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a---~~~L~~l~~~~~~~~~~~~~~ 81 (454)
+.-+|+.+|..|+..|..++..........+.++ ++.|......++ +++...- +..+.+.- ++.-..++..
T Consensus 99 ~~v~d~~vQrkAi~EL~~VM~~sG~y~q~~~~ke--Ie~LK~yfNasn-~Dv~dggplFl~ilknwk---ee~dkkIi~S 172 (258)
T 1fyh_A 99 YSVTDLNVQRKAIDELIQVMAELGANVSGEFVKE--AENLKKYFNAGH-SDVADNGTLFLGILKNWK---EESDRKIMQS 172 (258)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHH--HHHHHHHHC--------CCCCSSHHHHHHCC---SHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCcccchhHHHH--HHHHHHHhccCC-ccccCCCcchHHhhhhhh---hccchhhHHH
Confidence 4557999999999999999776544444444443 777877777666 5543211 33444433 3455566667
Q ss_pred CChHHHHHhhCC--CCHHHHHHHHHH-----HHHhhCCChhhHHHHHhcCChHHHHHHhc-hhhhhhHHHHHHHHHHhhc
Q 012897 82 GAVPIFVKLLAS--PSDDVREQAVWA-----LGNVAGDSPRCRDLVLSQGALIPLLAQLN-ERAKLSMLRNATWTLSNFC 153 (454)
Q Consensus 82 g~i~~L~~lL~~--~~~~v~~~a~~~-----L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~l~ 153 (454)
.+++.-.+++.. .++.++.. +.. +.+.-.++.. -+..+..+.. +-.++.+++.|++=|..+.
T Consensus 173 QIvs~Y~KlFe~Lkdn~~iq~s-m~~IkedL~~~~fn~s~~---------Kl~df~~L~ki~vnD~~IQrKAi~EL~~V~ 242 (258)
T 1fyh_A 173 QIVSFYFKLFKNFKDDQSIQKS-VETIKEDMNVKFFNSNKK---------KRDDFEKLTNYSVTDLNVQRKAIHELIQVM 242 (258)
T ss_dssp HHHHHHHHHHHTTTTCTTTHHH-HHHHHHHHHHHHTTSCHH---------HHHHHHHHHTCCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCHHHHHH-HHHHHHHHHHHhccCcHH---------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 778777777653 23333333 221 2222222111 1233333332 3457888888887776665
Q ss_pred CC
Q 012897 154 RG 155 (454)
Q Consensus 154 ~~ 155 (454)
..
T Consensus 243 ~~ 244 (258)
T 1fyh_A 243 AE 244 (258)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 177
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=31.04 E-value=3.3e+02 Score=25.41 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCCCCH--H-HHHHHHHHHHHh
Q 012897 33 EEVIQSGVVPRFVEFLMREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSD--D-VREQAVWALGNV 109 (454)
Q Consensus 33 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~-v~~~a~~~L~~l 109 (454)
+.+.+---+..++..|.++. +.+...|+.++. .+..+..+...+++..+++++-+++. . +....=.++..+
T Consensus 110 d~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~L 183 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERL 183 (500)
T ss_dssp HHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 34455556778889999987 889898888887 34556677888999999998876442 2 555555666667
Q ss_pred hCCChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCC
Q 012897 110 AGDSPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRG 155 (454)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~ 155 (454)
++ +.-.|..+.+ +.++.+.. ++...++.+....+..+.-+...
T Consensus 184 ss-deLirrril~-nnl~lL~~-vK~~~~~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 184 ST-DELIRRRLFD-NNLPYLVS-VKGRMETVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp TT-SHHHHHHHHT-TTHHHHHH-HHHHCCHHHHHHHHHHHHHHHTT
T ss_pred Cc-hHHHHHHHHH-HhHHHHHH-HhcCCCceeHHHHHHHHHHHhcc
Confidence 53 3335556654 34554444 43555666666666666655544
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=29.00 E-value=2.9e+02 Score=24.13 Aligned_cols=184 Identities=13% Similarity=0.127 Sum_probs=100.7
Q ss_pred chhhHHHHHhHhhccCccchhhhhccCChHHHHHh-hc----C---CcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCCh
Q 012897 224 VLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGL-LT----H---SHKKSIKKEACWTISNITAGNRDQIQAVIDAGLV 295 (454)
Q Consensus 224 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~-L~----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 295 (454)
+++..++.+.......+. .+ .+....++.|+.. |. + ..++++-.-.+.++..+...-.+.+..+.+ .+.
T Consensus 45 vKkeiLkLiet~i~~~~d-~~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSND-PQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSC-HH-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 455566666666554432 22 2223455555542 21 1 114455555555555554432333333332 355
Q ss_pred HHHHHHhhh---cchhhHHHHHHHHHHhcCCC-------CHHHHHHHHHcCCcHHHhhccCCCCHHHHHHHHHHHHHHHH
Q 012897 296 GPLVNLLQN---AEFDIKKEAAWAISNATSGG-------THEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILK 365 (454)
Q Consensus 296 ~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~~l~~~~~~v~~~al~~L~~l~~ 365 (454)
..-+++++. +-|+.|.+=...|..+...+ ++++.+. +++.++-..++.++++...++.++..+++
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 556666664 35777776666666665433 3333232 57778888999999999999999999988
Q ss_pred hhhhhhhccCCcccccHHHHHHHHhccHHHHHHH----hcCCCHHHHHHHHHHHHHhcCcCCCc
Q 012897 366 VGEAEKNMGTATADVNQYAQLVEEAEGLEKIENL----QSHDNNEIYEKAVKILETYWLEEDDE 425 (454)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~~~~~~ 425 (454)
...+.. ++...|-+.-.+..++.+ .......-.+.-..+|..++.--++.
T Consensus 197 n~~~~~----------~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~~ 250 (321)
T 1w9c_A 197 NVAQEE----------AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG 250 (321)
T ss_dssp HHHHCH----------HHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCh----------HHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHcC
Confidence 765311 134444444445555543 33333334555566777777544433
No 179
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=26.72 E-value=1.4e+02 Score=22.53 Aligned_cols=74 Identities=5% Similarity=-0.058 Sum_probs=53.9
Q ss_pred hchHHHHHHhhcCCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhcc
Q 012897 165 RPALPALAQLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTG 238 (454)
Q Consensus 165 ~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 238 (454)
..++..+.+.+....+.-+..++..+-.++.+........+..++.+.+.......++..+....+.+...-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 56667777777777888888888888887765444445566667777777777666778888888877777654
No 180
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=26.67 E-value=5.1e+02 Score=26.13 Aligned_cols=283 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred ChhhHHHHHhcCChHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcC---CChhHHHHHHHH
Q 012897 113 SPRCRDLVLSQGALIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHS---NDEEVLTDACWA 189 (454)
Q Consensus 113 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~v~~~a~~~ 189 (454)
.+..++.+++ .+.+++..-..+++..+...+..++.+|+.-.|........+++..+..-|+. ..+--...++.+
T Consensus 329 t~~~~~~fV~--~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 329 TSFCHEEIVE--IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHH--HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHH
Q ss_pred HHHhc---cCChHHHHHHHHhCcHHHHHHhcCCCCCcchhhHHHHHhHhhccCccc------------------------
Q 012897 190 LSYLS---DGTNDKIQAVIEAGVCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQ------------------------ 242 (454)
Q Consensus 190 L~~l~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------------------------ 242 (454)
+..++ ...+.....+.. ++..++.-++.+++.-...++..+..++..-+-.
T Consensus 407 l~~~~r~lv~~~~yr~hl~~--lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~ 484 (799)
T 1vsy_4 407 FTRVIRFIVMDKLYRVHITN--VLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFY 484 (799)
T ss_dssp HHTTHHHHTTSTTGGGHHHH--HHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHH--HHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhh
Q ss_pred ----------------------------hhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCC
Q 012897 243 ----------------------------TQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGL 294 (454)
Q Consensus 243 ----------------------------~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 294 (454)
....+. .++..++.++.+..+..+-.....++..+.....+..-..+
T Consensus 485 ~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~-~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~---- 559 (799)
T 1vsy_4 485 HIKCGESSKTFRVDDELLNNAFKASTTVFQSMLK-VYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYF---- 559 (799)
T ss_dssp HHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHH-HHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHH----
T ss_pred hhccccccccccccHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHH----
Q ss_pred hHHHHHHhhhcchhhHHHHHHHH----HHhcCCCCHHHHHHHHHcCCcHHHhhccCCC------------CHHHHHHHHH
Q 012897 295 VGPLVNLLQNAEFDIKKEAAWAI----SNATSGGTHEQIKYLVREGCIKPLCDLFVCP------------DPRIVTVCLE 358 (454)
Q Consensus 295 i~~L~~ll~~~~~~v~~~a~~aL----~~l~~~~~~~~~~~l~~~~~i~~L~~~l~~~------------~~~v~~~al~ 358 (454)
+..+.+............+...| ..-+...+++ .-...-..++..+...++++ .+.-...-+.
T Consensus 560 l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~ 638 (799)
T 1vsy_4 560 ASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLT 638 (799)
T ss_dssp HHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhccCCcccccHHHHHHHHhccHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q 012897 359 GLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQ-SHDNNEIYEKAVKILETYW 419 (454)
Q Consensus 359 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~ 419 (454)
+|..++..+.. ..=.+...+. +.+..+. +..++.+...+.+++..++
T Consensus 639 iL~~~v~~~g~---------~lL~y~deL~-----~il~~~~~~~k~~~~~~~~~~ll~~lL 686 (799)
T 1vsy_4 639 ALNDVLRNCHE---------SLLEYSDELI-----TFMKYLYDNVTNPPLDVITSIVIHSAL 686 (799)
T ss_dssp HHHHHHTTTGG---------GGGTTHHHHH-----HHHHHHHHSCCCHHHHHHHTTHHHHHH
T ss_pred HHHHHHhcCcH---------HHHccHHHHH-----HHHHHHHHHhcCcchHHHHHHHHHHHH
No 181
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.01 E-value=2.5e+02 Score=22.43 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCCh----hhHHHHHhcCCh
Q 012897 57 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------PSDDVREQAVWALGNVAGDSP----RCRDLVLSQGAL 126 (454)
Q Consensus 57 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i 126 (454)
+..|+..|.+=.. =+..+|.++.++.+ .+.......++....+..+.. .+-.. .+
T Consensus 25 r~~aL~sL~~D~g----------L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~-----Li 89 (196)
T 4atg_A 25 KDIAIECLEKESG----------LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQ-----IL 89 (196)
T ss_dssp HHHHHHHHHHCSS----------CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHH-----HH
T ss_pred HHHHHHHHhcCCC----------hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHH-----HH
Confidence 5555555554333 12467777776643 456666666777666654322 22222 35
Q ss_pred HHHHHHhchh--hhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCC--ChhHHHHHHHHHHHhc
Q 012897 127 IPLLAQLNER--AKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSN--DEEVLTDACWALSYLS 194 (454)
Q Consensus 127 ~~l~~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~a~~~L~~l~ 194 (454)
+.++.++-.. ....+|+.|+..+..++.............+...+.+.+.++ ......-|+..|..+.
T Consensus 90 psvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 90 PSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 6666655321 112799999999999998754444444566777777776554 4455666666666654
No 182
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=24.96 E-value=1.6e+02 Score=21.63 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 012897 128 PLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLS 194 (454)
Q Consensus 128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~ 194 (454)
..++-| ....+.+...+.|++.+.-. ...++..+.+.+....+.-+...+..+-.+.
T Consensus 11 ~~L~~L-~~s~~sI~~~s~w~l~~~~~---------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl 67 (135)
T 4fu3_A 11 KKLSEL-SNSQQSVQTLSLWLIHHRKH---------AGPIVSVWHRELRKAKSNRKLTFLYLANDVI 67 (135)
T ss_dssp HHHHHC-CSSTTHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHH
T ss_pred HHHHHc-cccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 344445 34556778888888876432 2455666666676666666667776666664
No 183
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=24.64 E-value=2.3e+02 Score=21.45 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=47.3
Q ss_pred cHHHhhccCC--CCHHHHHHHHHHHHHHHHhhhhhhhccCCcccccHHHHHHH-HhccHHHHHHHhcC------CCHHHH
Q 012897 338 IKPLCDLFVC--PDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVE-EAEGLEKIENLQSH------DNNEIY 408 (454)
Q Consensus 338 i~~L~~~l~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~l~~l~~~------~~~~v~ 408 (454)
+..|-.-|.+ .++....++|..|..+++.++.. +..-+. ....+..|..+... ....|+
T Consensus 61 m~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~------------vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR 128 (148)
T 1inz_A 61 MSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSER------------VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVR 128 (148)
T ss_dssp HHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHH------------HHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHH
T ss_pred HHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHhhcceeeeCCCCcCchHHHH
Confidence 4555555554 36788889999999999987654 222222 22334555554322 346899
Q ss_pred HHHHHHHHHhcCcCC
Q 012897 409 EKAVKILETYWLEED 423 (454)
Q Consensus 409 ~~a~~~l~~~~~~~~ 423 (454)
++|..+++-+-+++.
T Consensus 129 ~kAk~l~~LL~D~e~ 143 (148)
T 1inz_A 129 EKAKQLVALLRDEDR 143 (148)
T ss_dssp HHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHhCCHHH
Confidence 999999987766554
No 184
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.97 E-value=1.6e+02 Score=22.09 Aligned_cols=72 Identities=6% Similarity=-0.069 Sum_probs=48.2
Q ss_pred CChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHHHHhCCChHHHHHHhhhcchhhHHHHHHHHHHhcC
Q 012897 250 GALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQAVIDAGLVGPLVNLLQNAEFDIKKEAAWAISNATS 322 (454)
Q Consensus 250 ~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 322 (454)
.++..+...+... .+.-+..+++.+-.++..........+..++.+.+.......++..|......+.-.-.
T Consensus 43 ~Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 43 YFVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 3455666666666 77888888888888876221122345556777777777776677888877777766653
No 185
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.72 E-value=1.3e+02 Score=24.82 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred cHHHHHHhcCCCCCcchhhHHHHHhHhhccCccchhhhhccCChHHHHHhhcCCcchhHHHHHHHHHHHHhcCCHHHHHH
Q 012897 209 VCPRLVELLGHPSPSVLIPALRTVGNIVTGDDFQTQCIITYGALPYLLGLLTHSHKKSIKKEACWTISNITAGNRDQIQA 288 (454)
Q Consensus 209 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 288 (454)
..+.+...+.+++.-++..|+..+.......+.... ...+...+.++ +.-|+....|+|..++...++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~-------~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEELL-------FWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHH-------HHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Q ss_pred HHhCCChHHHH
Q 012897 289 VIDAGLVGPLV 299 (454)
Q Consensus 289 l~~~~~i~~L~ 299 (454)
+++..-++.+.
T Consensus 204 fl~~~~l~~~~ 214 (232)
T 3jxy_A 204 YVQNNELAPLS 214 (232)
T ss_dssp HHHHSCCCHHH
T ss_pred HHHHCCCCHHH
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=20.72 E-value=95 Score=19.97 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhcCcCCC
Q 012897 405 NEIYEKAVKILETYWLEEDD 424 (454)
Q Consensus 405 ~~v~~~a~~~l~~~~~~~~~ 424 (454)
+++++.+...++.+|++++|
T Consensus 50 ~~Ir~~~~e~~~~FFpe~~~ 69 (70)
T 2g7o_A 50 EDIREKVSSEMERFFPKNDD 69 (70)
T ss_dssp HHHHHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHhCccccC
Confidence 46788888999999987655
No 187
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.70 E-value=1.3e+02 Score=22.12 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=40.1
Q ss_pred hHHHHHHhchhhhhhHHHHHHHHHHhhcCCCCCCChhhhhchHHHHHHhhcCCChhHHHHHHHHHHHhccC
Q 012897 126 LIPLLAQLNERAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAQLVHSNDEEVLTDACWALSYLSDG 196 (454)
Q Consensus 126 i~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 196 (454)
+...++-| ....+.+...+.|++.+.-. ...++..+.+.+....++-+...+..+-.++.+
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~---------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKH---------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 33444455 45567788888888877432 245667777777777777777777777766643
No 188
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.53 E-value=2.8e+02 Score=20.92 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=55.5
Q ss_pred CCcHHHHHHcCCHHHHHHhhcCCC-----ChhHHHHHHHHHHHhcCCCchhhHHHHhCCChHHHHHhhCC--CCHHHHHH
Q 012897 29 SPPIEEVIQSGVVPRFVEFLMRED-----YPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSDDVREQ 101 (454)
Q Consensus 29 ~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~ 101 (454)
......+++.|++..+-..|.--. +..+|...+.+|.++-- .+..+.+.|+-..++-+-++ +.++.++.
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 456788999999999998887421 26789998999888753 25666666766666555555 55778887
Q ss_pred HHHHHHHhh
Q 012897 102 AVWALGNVA 110 (454)
Q Consensus 102 a~~~L~~l~ 110 (454)
|-..+...+
T Consensus 127 a~~Li~~Ws 135 (145)
T 2xpp_A 127 AKALVQKWT 135 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
Done!