BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012900
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/408 (26%), Positives = 167/408 (40%), Gaps = 65/408 (15%)
Query: 68 PIILWLQGGPGASGVGIGNFEEVGPF----DTYLKPRNSTWLKKADLLFVDNPVGTGYSY 123
P+I+WL GGPG S + G E GPF D L +W+ K DLLF+D P GTG+S
Sbjct: 68 PLIIWLNGGPGCSSMD-GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFS- 125
Query: 124 VEDNSSFVKNDV----EAANDLTTLLME-LFNKNEILQKS---PLFIVAESYGGKFAATL 175
VE N K D E D+T M+ L N +I + + + ESY G++
Sbjct: 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFF 185
Query: 176 GLAAVXXXXXXXXXXXXXXXXXX---DSWISPEDFVFSWGPL-----LKDMSRLDTNGFA 227
A + + WI P S+ P L D S +
Sbjct: 186 ANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLT 245
Query: 228 KSNQIAQKIKQQLEAGEFVGATDSWAQLESVI----------SQ--NSNAVDFYNFLLDS 275
+++ Q + E A S+ + E+++ SQ ++ ++ YNF
Sbjct: 246 NAHENCQNLINSASTDE--AAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNF---- 299
Query: 276 GMDPVSLTASTLAVGASMRKYSRYLSAHKSSTPDGDGDVGSLMNGVIKKKLKIIPENIT- 334
+L S + G + K ++S STP GVI L + + I
Sbjct: 300 -----NLKDSYPSCGMNWPKDISFVSKF-FSTP-----------GVI-DSLHLDSDKIDH 341
Query: 335 WGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKLKWD 394
W ++SV T+LS +P I + LL G+ + ++NG D+IC+ KG I+ LKW
Sbjct: 342 WKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWG 401
Query: 395 GLQKFLSTERTPLFCGNDKIT------KGFKKSYKNLHFYWILGAGHF 436
G++ F + + K T G+ K +NL F + A H
Sbjct: 402 GIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHM 449
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 39 GYVEVRPKA--HMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTY 96
GY+ V A +F+ L ++P ++P P++LWL GGPG S V G EE+G F
Sbjct: 23 GYITVDEGAGRSLFYLLQEAP----EDAQPAPLVLWLNGGPGCSSVAYGASEELGAFR-- 76
Query: 97 LKPRNS-------TWLKKADLLFVDNPVGTGYSYVEDNSS-FVKNDVEAANDLTTLLMEL 148
+KPR + W K A++LF+D+P G G+SY +S + D A+D L +
Sbjct: 77 VKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKW 136
Query: 149 FNKNEILQKSPLFIVAESYGGKFAATL 175
F + + +I ESY G + L
Sbjct: 137 FERFPHYKYRDFYIAGESYAGHYVPEL 163
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 39 GYVEVRPKA--HMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTY 96
GY+ V A +F+ L ++P ++P P++LWL GGPG S V G EE+G F
Sbjct: 27 GYITVDEGAGRSLFYLLQEAP----EDAQPAPLVLWLNGGPGCSSVAYGASEELGAFR-- 80
Query: 97 LKPRNS-------TWLKKADLLFVDNPVGTGYSYVEDNSS-FVKNDVEAANDLTTLLMEL 148
+KPR + W K A++LF+D+P G G+SY +S + D A+D L +
Sbjct: 81 VKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKW 140
Query: 149 FNKNEILQKSPLFIVAESYGGKFAATL 175
F + + +I ESY G + L
Sbjct: 141 FERFPHYKYRDFYIAGESYAGHYVPEL 167
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 39 GYVEVRPKA--HMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTY 96
GY+ V A +F+ L ++P ++P P++LWL GGPG S V G EE+G F
Sbjct: 22 GYITVDEGAGRSLFYLLQEAP----EDAQPAPLVLWLNGGPGCSSVAYGASEELGAFR-- 75
Query: 97 LKPRNS-------TWLKKADLLFVDNPVGTGYSYVEDNSS-FVKNDVEAANDLTTLLMEL 148
+KPR + W K A++LF+D+P G G+SY +S + D A+D L +
Sbjct: 76 VKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKW 135
Query: 149 FNKNEILQKSPLFIVAESYGGKFAATL 175
F + + +I ESY G + L
Sbjct: 136 FERFPHYKYRDFYIAGESYAGHYVPEL 162
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 39 GYVEVRPKA--HMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTY 96
GY+ V A +F+ L ++P ++P P++LWL GGPG S V G EE+G F
Sbjct: 27 GYITVDEGAGRSLFYLLQEAP----EDAQPAPLVLWLNGGPGCSSVAYGASEELGAFR-- 80
Query: 97 LKPRNS-------TWLKKADLLFVDNPVGTGYSYVEDNSS-FVKNDVEAANDLTTLLMEL 148
+KP + W K A++LF+D+P G G+SY +S + D A+D L +
Sbjct: 81 VKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKW 140
Query: 149 FNKNEILQKSPLFIVAESYGGKFAATL 175
F + + +I ESY G + L
Sbjct: 141 FERFPHYKYRDFYIAGESYAGHYVPEL 167
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 39 GYVEVRPKAHMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPF----- 93
GY++ H+ +W +S EN P++LWL GGPG S + G E GPF
Sbjct: 24 GYLKSSGSKHLHYWFVESQKDPENS----PVVLWLNGGPGCSSLD-GLLTEHGPFLVQPD 78
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNE 153
L+ +W A++L++++P G G+SY D+ + ND E A L + F
Sbjct: 79 GVTLEYNPYSWNLIANVLYLESPAGVGFSY-SDDKFYATNDTEVAQSNFEALQDFFRLFP 137
Query: 154 ILQKSPLFIVAESYGGKFAATLGLAAV 180
+ + LF+ ESY G + TL + +
Sbjct: 138 EYKNNKLFLTGESYAGIYIPTLAVLVM 164
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 317 LMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLA-KGVNVTVYNGQL 375
L N ++K L I PE + + + R S+ +LL+ + + +YNG +
Sbjct: 313 LNNPYVRKALNI-PEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDV 371
Query: 376 DVICSTKGTEAWIEKLKWDGLQKFLSTERTP---LFCGNDKITKGFKKSYKNLHFYWILG 432
D+ C+ G E ++ D L + + +R P + + + GF K + ++ F I G
Sbjct: 372 DMACNFMGDEWFV-----DSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKG 426
Query: 433 AGH 435
AGH
Sbjct: 427 AGH 429
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 39 GYVEVRPKAHMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGIGNFEEVGPF----- 93
GY++ H+ +W +S EN P++LWL GGPG S + G E GPF
Sbjct: 26 GYLKGSGSKHLHYWFVESQKDPENS----PVVLWLNGGPGCSSLD-GLLTEHGPFLVQPD 80
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNE 153
L+ +W A++L++++P G G+SY D+ + ND E A L + F
Sbjct: 81 GVTLEYNPYSWNLIANVLYLESPAGVGFSY-SDDKFYATNDTEVAQSNFEALQDFFRLFP 139
Query: 154 ILQKSPLFIVAESYGGKFAATLGLAAV 180
+ + LF+ ESY G + TL + +
Sbjct: 140 EYKNNKLFLTGESYAGIYIPTLAVLVM 166
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 26 RALNKNQDASEEWGYVEVRPK-AHMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGI 84
+ L + + ++ GY++V + H F+W ++S +P+K P+ILWL GGPG S +
Sbjct: 6 KILGIDPNVTQYTGYLDVEDEDKHFFFWTFESR---NDPAKD-PVILWLNGGPGCSSL-T 60
Query: 85 GNFEEVGP--FDTYLKPRNS--TWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAAND 140
G F E+GP LKP + +W A ++F+D PV G+SY SS V N V A D
Sbjct: 61 GLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSY--SGSSGVSNTVAAGKD 118
Query: 141 LTTLLMELFNK-NEILQKSPLFIVA-ESYGGKFAATLG 176
+ L F++ E + K F +A ESY G +
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFA 156
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 346 LSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKLKWDGLQKFLSTERT 405
+GD+M+P + V +LL + + + VY G D IC+ G +AW + L W ++F S +
Sbjct: 308 FAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVR 367
Query: 406 PLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
G KSYK+ + + GH
Sbjct: 368 NWTASITDEVAGEVKSYKHFTYLRVFNGGH 397
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 69 IILWLQGGPGASGVGIGNFEEVGPFDTY-----LKPRNSTWLKKADLLFVDNPVGTGYSY 123
++LWL GGPG S +G+G +E+G F + L W K A++LF ++P G G+SY
Sbjct: 56 LVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSY 115
Query: 124 VEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGGKFAATL 175
+S D + A D T L++ F + +I ES G F L
Sbjct: 116 SNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQL 165
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 26 RALNKNQDASEEWGYVEVRPK-AHMFWWLYKSPYRIENPSKPWPIILWLQGGPGASGVGI 84
+ L + + ++ GY++V + H F+W ++S +P+K P+ILWL GGPG S +
Sbjct: 6 KILGIDPNVTQYTGYLDVEDEDKHFFFWTFESR---NDPAKD-PVILWLNGGPGCSSL-T 60
Query: 85 GNFEEVGP--FDTYLKPRNS--TWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAAND 140
G F +GP LKP + +W A ++F+D PV G+SY SS V N V A D
Sbjct: 61 GLFFALGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSY--SGSSGVSNTVAAGKD 118
Query: 141 LTTLLMELFNK-NEILQKSPLFIVA-ESYGGKFAATLG 176
+ L F++ E + K F +A SY G +
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFA 156
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 346 LSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKLKWDGLQKFLSTERT 405
+GD+M+P + V +LL + + + VY G D IC+ G +AW + L W ++F S +
Sbjct: 308 FAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVR 367
Query: 406 PLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
G KSYK+ + + GH
Sbjct: 368 NWTASITDEVAGEVKSYKHFTYLRVFNGGH 397
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 332 NITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKL 391
N TW SD++ T D R + EL+A G+ + V++G D + T I L
Sbjct: 32 NYTWATCSDTINTHWH-DAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGAL 90
Query: 392 KWDGLQKFLSTERTPLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
GL +T P + +D+ G+ + YK L + GAGH
Sbjct: 91 ---GLPT--TTSWYPWY--DDQEVGGWSQVYKGLTLVSVRGAGH 127
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 332 NITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKL 391
N TW SD++ T D R + EL+A G+ + V++G D + T I L
Sbjct: 32 NYTWATCSDTINTHWH-DAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGAL 90
Query: 392 KWDGLQKFLSTERTPLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
GL +T P + +D+ G+ + YK L + GAGH
Sbjct: 91 ---GLPT--TTSWYPWY--DDQEVGGWSQVYKGLTLVSVRGAGH 127
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 332 NITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKL 391
N TW SD++ T D R + EL+A G+ + V++G D + T I L
Sbjct: 32 NYTWATCSDTINTHWH-DAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGAL 90
Query: 392 KWDGLQKFLSTERTPLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
GL +T P + +D+ G+ + YK L + GAGH
Sbjct: 91 ---GLPT--TTSWYPWY--DDQEVGGWSQVYKGLTLVSVRGAGH 127
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 317 LMNGVIKKKLKIIPENITWGGQSDSVFTELSGDFMRPRISEVDELLA-KGVNVTVYNGQL 375
L N ++K L I PE + + + R S+ +LL+ + + +YNG +
Sbjct: 15 LNNPYVRKALNI-PEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDV 73
Query: 376 DVICSTKGTEAWIEKLKWDGLQKFLSTERTP---LFCGNDKITKGFKKSYKNLHFYWILG 432
D+ C+ G E ++ D L + + +R P + + + GF K + ++ F I G
Sbjct: 74 DMACNFMGDEWFV-----DSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAFLTIKG 128
Query: 433 AGH 435
AGH
Sbjct: 129 AGH 131
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 332 NITWGGQSDSVFTELSGDFMRPRISEVDELLAKGVNVTVYNGQLDVICSTKGTEAWIEKL 391
N TW SD++ T D R + EL+A G+ + V++G D + T I L
Sbjct: 34 NYTWATCSDTINTHWH-DAPRSMLPIYRELIAAGLRIWVFSGDTDAVVPLTATRYSIGAL 92
Query: 392 KWDGLQKFLSTERTPLFCGNDKITKGFKKSYKNLHFYWILGAGH 435
GL +T P + +D+ G+ + YK L + GAGH
Sbjct: 93 ---GLPT--TTSWYPWY--DDQEVGGWSQVYKGLTLVSVRGAGH 129
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 118 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 166
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 126 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 174
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 126 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 174
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 144 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 192
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 153 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 201
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 143 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 191
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 167 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 215
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 127 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 175
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 141 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 189
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 141 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 189
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 127 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 175
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 133 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 181
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 127 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 175
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 94 DTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDLTT 143
+T +P + L DLL V + G Y+E+N F+ D+ A N L T
Sbjct: 141 ETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLT 189
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 272 LLDSGMDPVSLTASTLAVGASMRKYSRY-------LSAHKSSTPDGDGDVGSLMNGVIKK 324
+ DSG+DP + TL G +++ RY + K TPD +G++ G+
Sbjct: 42 IFDSGVDPRATGLETLCDGKTVKVIERYDCSGCGDVDXKKKVTPDENGNI----KGLSGN 97
Query: 325 KLKIIPE 331
LK+ PE
Sbjct: 98 SLKLSPE 104
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 234 QKIKQQLEAGEF----------VGATDSWAQLESVISQNSNAVDFYNFLLDSG-MDPVSL 282
Q I+ Q++ GE+ G S+A E + ++ VD+YN D G + PV L
Sbjct: 122 QDIRXQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFXTSLVDWYNLEADKGILTPVEL 181
Query: 283 TASTLAVGASMRKYSRYLSAHKSSTPDGDGDVGSLM 318
A++ Y RY+ H DG+G + L+
Sbjct: 182 --------AALLHY-RYIRIHPFE--DGNGRIARLL 206
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 61 ENPSKPWPIILWLQGGPGASGVGIGNFEEVGPF 93
+N + P P++LW+ GG G IG E PF
Sbjct: 73 DNTAGPVPVLLWIHGG----GFAIGTAESSDPF 101
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 61 ENPSKPWPIILWLQGGPGASGVGIGNFEEVGPF 93
+N + P P++LW+ GG G IG E PF
Sbjct: 73 DNTAGPVPVLLWIHGG----GFAIGTAESSDPF 101
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 84 IGNFEEVGPFDTYLKPRNSTWLKKADLLFVDNPVGTGYSYVEDNSSFVKNDVEAANDL 141
+G + G +LK +L+ L+ + + +G +YVE ++V D+ AAN L
Sbjct: 256 VGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE-RMNYVHRDLRAANIL 312
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 62 NPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTYL 97
+P+K +P+I+++ GGP A V VG +D Y+
Sbjct: 480 DPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 62 NPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTYL 97
+P+K +P+I+++ GGP A V VG +D Y+
Sbjct: 480 DPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 62 NPSKPWPIILWLQGGPGASGVGIGNFEEVGPFDTYL 97
+P+K +P+I+++ GGP A V VG +D Y+
Sbjct: 480 DPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYM 515
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,438,742
Number of Sequences: 62578
Number of extensions: 641687
Number of successful extensions: 1818
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1783
Number of HSP's gapped (non-prelim): 68
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)