BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012901
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVV------FMHG 308
D+ LL+FLRAR F V+ A M +N +WR ++G D +L +D D ++ + H
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHK 110
Query: 309 VDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWR----IQF-LEKSIRKLDFSPS 363
DK+G PV + G E+ N + +E+ K L W +Q+ L R
Sbjct: 111 TDKDGRPVYFEELGAVNLHEM--NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVE 168
Query: 364 GICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423
CTI+ DLK + + +A ++ Q+ YPE + + IN P+ + R+
Sbjct: 169 TSCTIM---DLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 225
Query: 424 SPFLTQRTKSKFVFSGPSKSAETL 447
PFL T SK G S E L
Sbjct: 226 KPFLDPVTVSKIFILGSSYQKELL 249
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 31/199 (15%)
Query: 258 LLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEED----------LGNDLDKVVFMH 307
L++LRA + +KD I T+ WR EFGI + EE + N+ K V +
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVIL- 148
Query: 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICT 367
G + + P+ Y G QN + H ++ + L + ++ R +DF P+G +
Sbjct: 149 GYENDARPILYLKPGR-QNTKTSH-------RQVQHLVFMLE------RVIDFMPAGQDS 194
Query: 368 IVQINDLKNSP------GPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNR 421
+ + D K+ P G +K + +H+LQ +YPE + + + N+PW F +
Sbjct: 195 LALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLK 254
Query: 422 MISPFLTQRTKSKFVFSGP 440
+I PF+ T+ K VF P
Sbjct: 255 LIHPFIDPLTREKLVFDEP 273
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 43/220 (19%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGN----DLDKV------- 303
D+ LL+FLRAR F + + M T RWR E+G + ++E+ N D +++
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 304 VFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRT------KFLKWRIQFLEKSIRK 357
+ H VDK+G P+ + G K++Y R F +R+ R+
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACS---RR 177
Query: 358 LDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLL----------QDNYPEFVARQ 407
+ CT++ DLK I+ + A H+L Q+ YPE + +
Sbjct: 178 AGYLIETSCTVL---DLKG----------ISLSNAYHVLSYIKDVADISQNYYPERMGKF 224
Query: 408 VFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETL 447
I+ P+ + +M+ PFL T SK G S E L
Sbjct: 225 YIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELL 264
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 43/220 (19%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGN---------DLDKVV- 304
D+ LL+FLRAR F + + M T RWR E+G + ++E+ N L K+
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 305 -FMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRT------KFLKWRIQFLEKSIRK 357
+ H VDK+G P+ + G K++Y R F +R+ R+
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACS---RR 177
Query: 358 LDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLL----------QDNYPEFVARQ 407
+ CT++ DLK I+ + A H+L Q+ YPE + +
Sbjct: 178 AGYLIETSCTVL---DLKG----------ISLSNAYHVLSYIKDVADISQNYYPERMGKF 224
Query: 408 VFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETL 447
I+ P+ + +M+ PFL T SK G S E L
Sbjct: 225 YIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELL 264
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVF--MHGVDKE 312
D LL++LRAR F ++ + M++ V +R + ID ++ + + + M G D +
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 313 GHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQIN 372
G PV Y++ G K L + D RTK + + L++ + + TI I
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 373 D-----LKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFL 427
D LK+ PA A + + + ++NYPE + R + P + +I PFL
Sbjct: 154 DCEGLGLKHLWKPAVE----AYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 428 TQRTKSKFVFSGPSKSAETLFKYV 451
++ T+ K + G + E L K++
Sbjct: 210 SEDTRKKIMVLG-ANWKEVLLKHI 232
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVF--MHGVDKE 312
D LL++LRAR F ++ + M++ V +R + ID ++ + + + M G D +
Sbjct: 35 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLD 94
Query: 313 GHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQIN 372
G PV Y++ G K L + D RTK + + L++ + + TI I
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 373 D-----LKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFL 427
D LK+ PA A + + + ++NYPE + R + P + +I PFL
Sbjct: 154 DCEGLGLKHLWKPAVE----AYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 428 TQRTKSKFVFSGPSKSAETLFKYV 451
++ T+ K + G + E L K++
Sbjct: 210 SEDTRKKIMVLG-ANWKEVLLKHI 232
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 25/204 (12%)
Query: 245 GIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG-IDAVLEEDLGNDLDKV 303
G+PL +D+ LL+FLRARDF + A+ ++KN +WR E I A L L K
Sbjct: 39 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 98
Query: 304 VFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFL--EKSIRKLDFS 361
+ HGV + P V +Y D + T + +R+ + E +++++
Sbjct: 99 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 150
Query: 362 PSGICTIVQI------NDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW 415
+GI I + + + +P AK +IA +L D++P V IN P
Sbjct: 151 RNGIKAIFDLEGWQFSHAFQITPSVAK---KIAA-----VLTDSFPLKVRGIHLINEPVI 202
Query: 416 YLAFNRMISPFLTQRTKSKFVFSG 439
+ A MI PFLT++ K + G
Sbjct: 203 FHAVFSMIKPFLTEKIKERIHMHG 226
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 13/204 (6%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVF--MHGVDKE 312
D LL++LRAR F ++ + ++ V +R + ID ++ + + + G D +
Sbjct: 35 DYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGXCGYDLD 94
Query: 313 GHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQIN 372
G PV Y++ G K L + D RTK + + L++ + + TI I
Sbjct: 95 GCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECEL-LLQECAHQTTKLGRKVETITIIY 153
Query: 373 D-----LKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFL 427
D LK+ PA A + + ++NYPE + R + P + +I PFL
Sbjct: 154 DCEGLGLKHLWKPAVE----AYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFL 209
Query: 428 TQRTKSKFVFSGPSKSAETLFKYV 451
++ T+ K G + E L K++
Sbjct: 210 SEDTRKKIXVLG-ANWKEVLLKHI 232
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 25/204 (12%)
Query: 245 GIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG-IDAVLEEDLGNDLDKV 303
G+PL +D+ LL+FLRARDF + A+ ++KN +WR E I A L L K
Sbjct: 23 GVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKA 82
Query: 304 VFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFL--EKSIRKLDFS 361
+ HGV + P V +Y D + T + +R+ + E +++++
Sbjct: 83 GY-HGVLRSRDPTGSKVL-------IYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 134
Query: 362 PSGICTIVQI------NDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW 415
+GI I + + + +P AK +IA +L D++P V IN P
Sbjct: 135 RNGIKAIFDLEGWQFSHAFQITPSVAK---KIAA-----VLTDSFPLKVRGIHLINEPVI 186
Query: 416 YLAFNRMISPFLTQRTKSKFVFSG 439
+ A I PFLT++ K + G
Sbjct: 187 FHAVFSXIKPFLTEKIKERIHXHG 210
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 252 DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG--IDAVLEEDLGNDLDKVV--FMH 307
++ L+F+RAR F V A+ +++ V +R ++ D++ E + ++ +
Sbjct: 89 EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLS 148
Query: 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICT 367
DK G V +Q++E+ + + L+ LEK + + +G C
Sbjct: 149 SRDKYGRVVXLFNIENWQSQEITFD---------EILQAYCFILEKLLENEETQINGFCI 199
Query: 368 IVQINDLKNSPGPAKR--DLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISP 425
I + R DLR + V LQD++P + FI+ PW++ ++ P
Sbjct: 200 IENFKGFTXQQAASLRTSDLR----KXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKP 255
Query: 426 FLTQRTKSKFVFSG 439
FL + + G
Sbjct: 256 FLKSKLLERVFVHG 269
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 19/194 (9%)
Query: 252 DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG--IDAVLEEDLGNDLDKVV--FMH 307
++ L+F+RAR F V A+ +++ V +R ++ D++ E + ++ +
Sbjct: 89 EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLS 148
Query: 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICT 367
DK G V +Q++E+ + + L+ LEK + + +G C
Sbjct: 149 SRDKYGRVVMLFNIENWQSQEITFD---------EILQAYCFILEKLLENEETQINGFCI 199
Query: 368 IVQINDLKNSPGPAKR--DLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISP 425
I + R DLR + V +LQD++P FI+ PW++ ++ P
Sbjct: 200 IENFKGFTMQQAASLRTSDLR----KMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKP 255
Query: 426 FLTQRTKSKFVFSG 439
FL + + G
Sbjct: 256 FLKSKLLERVFVHG 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,726,378
Number of Sequences: 62578
Number of extensions: 325961
Number of successful extensions: 762
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 17
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)