Query 012901
Match_columns 454
No_of_seqs 210 out of 1208
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470 Phosphatidylinositol t 100.0 5E-36 1.1E-40 300.0 17.4 186 251-453 45-232 (324)
2 KOG1471 Phosphatidylinositol t 100.0 1.1E-32 2.3E-37 276.9 18.6 206 242-453 31-246 (317)
3 PF00650 CRAL_TRIO: CRAL/TRIO 99.9 1.5E-25 3.3E-30 201.1 10.3 141 302-453 7-149 (159)
4 smart00516 SEC14 Domain in hom 99.9 1.6E-22 3.6E-27 181.3 15.2 133 308-453 14-146 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 6.5E-21 1.4E-25 168.0 14.6 137 304-453 11-147 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.3 4.3E-12 9.4E-17 114.1 5.4 129 303-453 3-133 (149)
7 KOG4406 CDC42 Rho GTPase-activ 98.4 2.5E-06 5.5E-11 88.4 11.0 123 309-452 89-211 (467)
8 PF03765 CRAL_TRIO_N: CRAL/TRI 98.3 6.6E-07 1.4E-11 68.0 3.8 31 249-279 25-55 (55)
9 KOG1534 Putative transcription 69.6 8.1 0.00018 38.1 5.0 103 347-453 75-191 (273)
10 PF03641 Lysine_decarbox: Poss 64.0 24 0.00052 31.4 6.6 43 406-451 86-133 (133)
11 PF14213 DUF4325: Domain of un 53.6 49 0.0011 26.4 6.2 48 370-421 20-69 (74)
12 PF14555 UBA_4: UBA-like domai 50.9 22 0.00049 25.5 3.4 24 254-277 14-37 (43)
13 PF04838 Baculo_LEF5: Baculovi 45.3 16 0.00034 33.9 2.2 48 389-437 17-68 (159)
14 KOG4178 Soluble epoxide hydrol 41.4 1.2E+02 0.0026 31.6 8.1 21 395-415 129-149 (322)
15 TIGR02364 dha_pts dihydroxyace 40.5 1.1E+02 0.0024 27.2 6.9 53 365-428 59-111 (125)
16 PF04548 AIG1: AIG1 family; I 37.6 1.1E+02 0.0023 29.1 6.9 71 367-438 49-122 (212)
17 PF02845 CUE: CUE domain; Int 36.5 64 0.0014 22.9 3.9 27 252-278 14-40 (42)
18 smart00546 CUE Domain that may 34.6 61 0.0013 23.0 3.5 26 252-277 15-40 (43)
19 PF11385 DUF3189: Protein of u 31.6 3.3E+02 0.0072 25.1 8.7 22 302-323 50-71 (148)
20 TIGR02886 spore_II_AA anti-sig 30.8 2.1E+02 0.0046 23.5 6.8 50 369-423 41-90 (106)
21 TIGR00730 conserved hypothetic 29.6 1.6E+02 0.0035 27.7 6.5 56 392-452 116-176 (178)
22 PF00627 UBA: UBA/TS-N domain; 26.6 1E+02 0.0022 21.2 3.4 23 254-276 15-37 (37)
23 PF06972 DUF1296: Protein of u 26.4 94 0.002 24.5 3.4 26 253-278 19-44 (60)
24 PF11964 SpoIIAA-like: SpoIIAA 25.9 1.2E+02 0.0025 25.1 4.4 63 368-439 33-96 (109)
25 PF09507 CDC27: DNA polymerase 25.4 95 0.0021 32.4 4.6 48 259-315 5-53 (430)
26 smart00165 UBA Ubiquitin assoc 25.3 1.1E+02 0.0023 20.7 3.4 23 254-276 14-36 (37)
27 PF01740 STAS: STAS domain; I 24.8 95 0.0021 26.1 3.7 49 368-421 49-97 (117)
28 smart00516 SEC14 Domain in hom 24.7 4.4E+02 0.0096 22.8 8.2 84 366-450 19-116 (158)
29 COG2961 ComJ Protein involved 24.7 46 0.00099 33.6 1.9 27 405-431 237-263 (279)
30 PF09967 DUF2201: VWA-like dom 24.4 1.3E+02 0.0029 26.5 4.6 33 368-403 1-33 (126)
31 TIGR00377 ant_ant_sig anti-ant 22.6 3E+02 0.0066 22.5 6.3 50 369-423 45-94 (108)
32 PF05762 VWA_CoxE: VWA domain 22.5 1.2E+02 0.0026 29.3 4.3 42 365-411 57-98 (222)
33 cd07043 STAS_anti-anti-sigma_f 22.4 3.5E+02 0.0076 21.3 6.5 51 369-424 40-90 (99)
34 cd07042 STAS_SulP_like_sulfate 21.9 3.1E+02 0.0067 22.0 6.2 50 368-422 42-91 (107)
35 cd00194 UBA Ubiquitin Associat 21.3 1.4E+02 0.0031 20.1 3.4 24 254-277 14-37 (38)
36 cd06844 STAS Sulphate Transpor 20.5 3.6E+02 0.0079 22.0 6.3 49 369-422 41-89 (100)
No 1
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=5e-36 Score=299.99 Aligned_cols=186 Identities=32% Similarity=0.553 Sum_probs=162.8
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCC-cccchhhccc-cceeeeeccCCCCCeEEEEecccccccc
Q 012901 251 DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDA-VLEEDLGNDL-DKVVFMHGVDKEGHPVCYNVFGEFQNKE 328 (454)
Q Consensus 251 d~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~id~-i~~edl~~el-~k~~fl~G~Dk~GrPViy~rlg~~d~k~ 328 (454)
.+++|.+|+||||||+||+++|.+||.++|.||+.+++.. +.++.+..++ .|.+|++|+|+.||||+|+++...
T Consensus 45 ~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~---- 120 (324)
T KOG1470|consen 45 KWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHDKDGRPVLYLRPRPH---- 120 (324)
T ss_pred hcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEecccCCCCeEEEEecCCC----
Confidence 4679999999999999999999999999999999999988 6666665454 478999999999999999975532
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEE
Q 012901 329 LYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQV 408 (454)
Q Consensus 329 l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~ 408 (454)
++++. +...+.|+++|+||.++..| +.|+.++++++|++|+| +++.+ ..+.+.++.+||+|||+||+..+
T Consensus 121 -~qn~~----t~~~~~r~~Vy~mE~Ai~~l---p~~qe~~~~L~D~~~fs-~sN~d-~~~~k~~~~~lq~hYPErLg~a~ 190 (324)
T KOG1470|consen 121 -RQNTK----TQKELERLLVYTLENAILFL---PPGQEQFVWLFDLTGFS-MSNPD-IKFLKELLHILQDHYPERLGKAL 190 (324)
T ss_pred -CCCCC----CHHHHHHHHHHHHHHHHHhC---CCCcceEEEEEecccCc-ccCCC-cHHHHHHHHHHHHhChHHhhhhh
Confidence 12222 25788999999999998765 67899999999999997 66767 68999999999999999999999
Q ss_pred EEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 409 FINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 409 IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
|+|+||+|..+|++++|||++.|++||+|+.+ .+.|.+|||+
T Consensus 191 l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~---~~~l~~~~d~ 232 (324)
T KOG1470|consen 191 LVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP---KDDLSEYFDE 232 (324)
T ss_pred hcCChHHHHHHHHHhhhccChhhhceeEEecC---hhHHHhhCCc
Confidence 99999999999999999999999999999985 4569999986
No 2
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=276.88 Aligned_cols=206 Identities=32% Similarity=0.482 Sum_probs=171.2
Q ss_pred hhccCCCCCC-CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccch-hhccccc--eeeeeccCCCCCeEE
Q 012901 242 FIWGIPLLGD-DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEED-LGNDLDK--VVFMHGVDKEGHPVC 317 (454)
Q Consensus 242 ~iwG~Pll~d-~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~id~i~~ed-l~~el~k--~~fl~G~Dk~GrPVi 317 (454)
.+|+.|+++. ..+|.+||||||+|+||+++|.+||.+++.||++++++.|..+. ...++.+ ...++|.|+.|+|++
T Consensus 31 ~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 110 (317)
T KOG1471|consen 31 WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVY 110 (317)
T ss_pred HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEE
Confidence 4899999985 89999999999999999999999999999999999999888751 1133333 356899999999999
Q ss_pred EEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhh-----ccCCCCeeEEEEEEeCCCCCCCCch-hHHHHHHH
Q 012901 318 YNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKL-----DFSPSGICTIVQINDLKNSPGPAKR-DLRIATNQ 391 (454)
Q Consensus 318 y~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~l-----d~~~~gv~~iviIiDLkG~sgl~~~-~l~~~iK~ 391 (454)
+.++|..+.+.++.++. ..+++++++.-+|+.+..+ .....+++|+++|+||+|+++.... ..+..+++
T Consensus 111 ~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~ 185 (317)
T KOG1471|consen 111 IERLGKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKK 185 (317)
T ss_pred EeccCCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHH
Confidence 99999999999987764 3566677666666655321 1124679999999999998733321 23678999
Q ss_pred HHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 392 AVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 392 il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
++.++|+|||++++++||||+|++|+++|++++|||+++|++||++++. ++.++|++||++
T Consensus 186 ~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k~i~~ 246 (317)
T KOG1471|consen 186 ILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLKYIPP 246 (317)
T ss_pred HHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-CchhhhhhhCCH
Confidence 9999999999999999999999999999999999999999999994433 389999999986
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.92 E-value=1.5e-25 Score=201.12 Aligned_cols=141 Identities=28% Similarity=0.538 Sum_probs=111.1
Q ss_pred ceeeeeccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCC
Q 012901 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (454)
Q Consensus 302 k~~fl~G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~ 381 (454)
+..+++|+|++||||+|+++|+++.... ...++++++++++|.+++.+.. .++++++++|+|++|++ ++
T Consensus 7 ~~~~~~g~D~~gr~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~E~~~~~~~~-~~~~~~~~~iiD~~g~~-~~ 75 (159)
T PF00650_consen 7 GPFYLHGRDKDGRPVIYIRLGRFDPKKF---------SPEDVIRFFVYLLERMLKRMPE-GGQVEGIVVIIDLSGFS-LS 75 (159)
T ss_dssp SCEEEEEE-TTS-EEEEEEGTT--HHTS----------HHHHHHHHHHHHHHHHHTHHH-TSHHH-EEEEEE-TT---HH
T ss_pred eeEEECCCCCCcCEEEEEEcccCCCCcC---------CHHHHHHHHHHHHHHHHhhhcc-cccceeEEEEEeCCCce-Ee
Confidence 4578999999999999999999987743 2578999999999999976543 46789999999999986 22
Q ss_pred chh--HHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 382 KRD--LRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 382 ~~~--l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
+.. ..++++.++.+++++||+|++++||||+|++|+.+|+++++||+++|++||+|++++++.+.|.+|||+
T Consensus 76 ~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~ 149 (159)
T PF00650_consen 76 NFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDP 149 (159)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTG
T ss_pred ccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCH
Confidence 211 157899999999999999999999999999999999999999999999999999775555799999985
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.89 E-value=1.6e-22 Score=181.25 Aligned_cols=133 Identities=32% Similarity=0.571 Sum_probs=116.3
Q ss_pred ccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCchhHHH
Q 012901 308 GVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRI 387 (454)
Q Consensus 308 G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~~l~~ 387 (454)
|+|++||||+|+++++++.... ..+++++++++++|.+++. ...+..+.++++|+|++|++. ++.. ++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~i~D~~~~~~-~~~~-~~ 81 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSV---------TLEELLRYLVYVLEKILQR-EKKTGGIEGFTVIFDLKGLSM-SNPD-LS 81 (158)
T ss_pred CCCCCcCEEEEEeccccccCcC---------CHHHHHHHHHHHHHHHHHH-HhcCCCeeeEEEEEECCCCCc-cccc-HH
Confidence 6999999999999999875432 2688999999999999875 223677899999999999863 3344 68
Q ss_pred HHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 388 ATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 388 ~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
+++.++.+++++||++++++||||+|++++++|+++++||++++++||+++++ ++.+.|.+|||+
T Consensus 82 ~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~~~~~L~~~i~~ 146 (158)
T smart00516 82 VLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN-DSKEELLEYIDP 146 (158)
T ss_pred HHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC-CCHHHHHhhCCH
Confidence 89999999999999999999999999999999999999999999999999986 358899999985
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.86 E-value=6.5e-21 Score=167.99 Aligned_cols=137 Identities=30% Similarity=0.467 Sum_probs=113.5
Q ss_pred eeeeccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCch
Q 012901 304 VFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKR 383 (454)
Q Consensus 304 ~fl~G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~ 383 (454)
.+..|+|++||||+|.++++.+....+ . .+++++++++.+|.+++.... ..+++++|+|++|++..+..
T Consensus 11 ~~~~~~D~~gr~V~~~~~~~~~~~~~~----~----~~~~~~~~~~~~e~~~~~~~~---~~~~~~~i~D~~~~~~~~~~ 79 (157)
T cd00170 11 GYLGGRDKEGRPVLIIRAGNKDLSKSL----D----SEELLRYLVYTLEKLLQEDDE---QVEGFVVIIDLKGLSLSHLL 79 (157)
T ss_pred cccCCCCCCcCEEEEEecCCcchhhcC----C----HHHHHHHHHHHHHHHHhhhhh---cccceEEEEECCCCChhccc
Confidence 344557999999999999975554431 1 267899999999999876543 23689999999998732221
Q ss_pred hHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 384 DLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 384 ~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
...+.+++++.+++++||++++++||||+|++|+.+|+++++||++++++||++++++ .+.|.+|||+
T Consensus 80 ~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~--~~~L~~~i~~ 147 (157)
T cd00170 80 PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD--KEELLKYIDK 147 (157)
T ss_pred hhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC--HHHHHhhCCh
Confidence 1257899999999999999999999999999999999999999999999999999863 8899999986
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.27 E-value=4.3e-12 Score=114.05 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=87.2
Q ss_pred eeeeeccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCc
Q 012901 303 VVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAK 382 (454)
Q Consensus 303 ~~fl~G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~ 382 (454)
.++..|+|++||||+++...++ ... ...+.++.+++..+. ..+ ...++++|+|+++.+..+.
T Consensus 3 ~~~~gG~d~~g~pV~~~~~~~~-~~~---------~~~~~ll~yl~~~l~---~~~-----~~~~f~vVid~~~~~~~~~ 64 (149)
T PF13716_consen 3 FFYPGGRDREGRPVVVFIASRL-PSS---------DDLERLLLYLLSTLS---EEV-----VDKPFSVVIDHTGFSRSSE 64 (149)
T ss_dssp E-EEEEEBTTS-EEEEEEGGG--C-T---------THHHHHHHHHHHHH----TTT-----TTS-EEEEEE-TT--GGG-
T ss_pred EEEecccCCCcCEEEEEECCcC-cch---------hhHHHHHHHHHHhhh---HHh-----cCCCEEEEEEcCCCccccC
Confidence 3567899999999999986665 211 124455555444441 111 1234899999998753222
Q ss_pred hhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH-HHHhhcCCHhh-hcceEEeCCCCCHHHHHhhhcc
Q 012901 383 RDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFN-RMISPFLTQRT-KSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 383 ~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lw-kiIKpFL~~kT-r~KI~fl~~sk~~etLlk~Idp 453 (454)
.. ++.++++..++...|+..|+++||||+.|+++.++ .+.+++++.+. ..||++++ +.+.|.+|||+
T Consensus 65 ~~-~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~---sl~~L~~~i~~ 133 (149)
T PF13716_consen 65 PS-LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS---SLSELSKHIDP 133 (149)
T ss_dssp ---HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES---STCGGGGTSGG
T ss_pred Cc-hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC---CHHHHHhhCCH
Confidence 23 78899999999999999999999999999999999 55667778888 89999997 57799999986
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.36 E-value=2.5e-06 Score=88.42 Aligned_cols=123 Identities=12% Similarity=0.237 Sum_probs=93.3
Q ss_pred cCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCchhHHHH
Q 012901 309 VDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIA 388 (454)
Q Consensus 309 ~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~~l~~~ 388 (454)
.|++||.|+++...++....-+ .+ ..++++.++.+++.++. . ++.+.=-.|.+ ..+..-+++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~el----d~----~~li~~~v~~id~~Ve~----D-----Yt~vYfh~gl~-s~nkp~l~~ 150 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSEL----DD----IRLISYLVYTIDKYVEN----D-----YTLVYFHHGLP-SDNKPYLQL 150 (467)
T ss_pred ccccCCeeEEEEEecCCchhhh----hh----HHHHHHHHHHHHHHHhc----c-----ceeeehhcCCc-ccccchHHH
Confidence 5999999999888877543321 11 23899999999999873 1 23333224433 222333566
Q ss_pred HHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhc
Q 012901 389 TNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVY 452 (454)
Q Consensus 389 iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Id 452 (454)
+.+...-+..+|--.++.+|+|..-|+++++|++++||++.+..+||+.++ +.++|+++|.
T Consensus 151 l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n---~lseL~~~l~ 211 (467)
T KOG4406|consen 151 LFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN---SLSELFEALK 211 (467)
T ss_pred HHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee---hHHHHHHhhh
Confidence 666666777789999999999999999999999999999999999999997 6899999985
No 8
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.29 E-value=6.6e-07 Score=68.02 Aligned_cols=31 Identities=52% Similarity=0.865 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 249 LGDDRSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 249 l~d~~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
.....+|.+||||||||+||+++|..||.+|
T Consensus 25 ~~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 25 EKEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 3567799999999999999999999999875
No 9
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=69.60 E-value=8.1 Score=38.14 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhccC---CCCeeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChH------HH
Q 012901 347 RIQFLEKSIRKLDFS---PSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW------YL 417 (454)
Q Consensus 347 ~i~llE~~i~~ld~~---~~gv~~iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~------f~ 417 (454)
++|+||+++..++.. -|....-.+|+||-|---+ ..| .-++++++.-++. .-.++..+|++..+++ |+
T Consensus 75 Lv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIEL-ytH-~pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiS 151 (273)
T KOG1534|consen 75 LVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIEL-YTH-LPVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFIS 151 (273)
T ss_pred chhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeEE-eec-ChhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHH
Confidence 678888887665432 3445666889999874211 123 3467777777777 4446667777766654 44
Q ss_pred HHHHHHhhc----CCH-hhhcceEEeCCCCCHHHHHhhhcc
Q 012901 418 AFNRMISPF----LTQ-RTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 418 ~lwkiIKpF----L~~-kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
..+..++.+ ++. ...+|+-++++ +++..|-+|++|
T Consensus 152 G~lsAlsAMi~lE~P~INvlsKMDLlk~-~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 152 GCLSALSAMISLEVPHINVLSKMDLLKD-KNKKELERFLNP 191 (273)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHhhh-hhHHHHHHhcCC
Confidence 444333332 222 44566666654 355666666654
No 10
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=64.04 E-value=24 Score=31.42 Aligned_cols=43 Identities=12% Similarity=0.343 Sum_probs=36.7
Q ss_pred eEEEEeCChHHHHHHHHH-----hhcCCHhhhcceEEeCCCCCHHHHHhhh
Q 012901 406 RQVFINVPWWYLAFNRMI-----SPFLTQRTKSKFVFSGPSKSAETLFKYV 451 (454)
Q Consensus 406 kI~IINaP~~f~~lwkiI-----KpFL~~kTr~KI~fl~~sk~~etLlk~I 451 (454)
.++++|..-+++-++.++ ..|+++.....+.|+. +.+.++++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d---~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD---DPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES---SHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC---CHHHHHhhC
Confidence 699999987778888877 4699999999999997 588998886
No 11
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=53.59 E-value=49 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCCchhHHHHHHHHHHHHHhhcc--cccceEEEEeCChHHHHHHH
Q 012901 370 QINDLKNSPGPAKRDLRIATNQAVHLLQDNYP--EFVARQVFINVPWWYLAFNR 421 (454)
Q Consensus 370 iIiDLkG~sgl~~~~l~~~iK~il~lLqd~YP--ErL~kI~IINaP~~f~~lwk 421 (454)
+++|+.|+.+++. +++-.++.-|...|+ ....++.++|+......+.+
T Consensus 20 V~lDF~gv~~~~s----sFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 20 VVLDFEGVESITS----SFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred EEEECCCcccccH----HHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 7899999875543 455556666666666 45578889998765544433
No 12
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=50.92 E-value=22 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=20.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMIK 277 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~Lk 277 (454)
++..-..||.+++||++.|+..+-
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678889999999999999998764
No 13
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=45.25 E-value=16 Score=33.90 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcccccc--eEEEEeCChHHHHHHHHHhhcCCH--hhhcceEE
Q 012901 389 TNQAVHLLQDNYPEFVA--RQVFINVPWWYLAFNRMISPFLTQ--RTKSKFVF 437 (454)
Q Consensus 389 iK~il~lLqd~YPErL~--kI~IINaP~~f~~lwkiIKpFL~~--kTr~KI~f 437 (454)
.+.++..|-.+||..++ ...++|..-.|.++|..+ |-++. +-|+.|++
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRL 68 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRL 68 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhh
Confidence 56778999999999998 888999999999999865 66666 77777777
No 14
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=41.44 E-value=1.2e+02 Score=31.58 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHhhcccccceEEEEeCChH
Q 012901 395 LLQDNYPEFVARQVFINVPWW 415 (454)
Q Consensus 395 lLqd~YPErL~kI~IINaP~~ 415 (454)
.|.-+||+|+.+++.+|+|..
T Consensus 129 ~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 129 RLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred HHHHhChhhcceEEEecCCCC
Confidence 355689999999999999987
No 15
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.48 E-value=1.1e+02 Score=27.20 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=35.0
Q ss_pred eeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCC
Q 012901 365 ICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLT 428 (454)
Q Consensus 365 v~~iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~ 428 (454)
-++++++.|| |.+.++ . +. ++.++. ++.+.++..+|.|.+..++...+.....
T Consensus 59 ~dgVlvl~DL-Ggs~~n-~---e~---a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~~g 111 (125)
T TIGR02364 59 ADGVLIFYDL-GSAVMN-A---EM---AVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQVG 111 (125)
T ss_pred CCCEEEEEcC-CCcHhH-H---HH---HHHHhc---cccccEEEEechhHHHHHHHHHHHHcCC
Confidence 3567999999 654221 1 11 233332 3566899999999999999887765443
No 16
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=37.61 E-value=1.1e+02 Score=29.14 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChH---HHHHHHHHhhcCCHhhhcceEEe
Q 012901 367 TIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW---YLAFNRMISPFLTQRTKSKFVFS 438 (454)
Q Consensus 367 ~iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~---f~~lwkiIKpFL~~kTr~KI~fl 438 (454)
.-+.|||.-|+......+ ..+++.+...+..++|+.-.-+||++...+ -..++..+..++.+...+.+.|+
T Consensus 49 ~~v~VIDTPGl~d~~~~~-~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSD-EEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEEEEE--SSEETTEEH-HHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEEeCCCCCCCcccH-HHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 346688887763222222 456677777777778887778888887644 34666667777777766665554
No 17
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.45 E-value=64 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKN 278 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~ 278 (454)
..+...|.+-|+.+++|++.|..+|..
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 357788888999999999999998864
No 18
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=34.61 E-value=61 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIK 277 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk 277 (454)
..++..+.+-|+++++|++.|...|.
T Consensus 15 ~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 15 NLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45788889999999999999998875
No 19
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=31.64 E-value=3.3e+02 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=18.6
Q ss_pred ceeeeeccCCCCCeEEEEeccc
Q 012901 302 KVVFMHGVDKEGHPVCYNVFGE 323 (454)
Q Consensus 302 k~~fl~G~Dk~GrPViy~rlg~ 323 (454)
+.+++.|.|..|+.|+.+-.++
T Consensus 50 G~l~y~G~De~gn~VY~lG~~~ 71 (148)
T PF11385_consen 50 GRLIYMGTDEYGNEVYILGRKN 71 (148)
T ss_pred ceEEEEEEcCCCCEEEEEecCC
Confidence 5688999999999999976553
No 20
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=30.79 E-value=2.1e+02 Score=23.54 Aligned_cols=50 Identities=12% Similarity=-0.114 Sum_probs=31.2
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI 423 (454)
.+|+||++++.+...- ...+..+...++ .+=.+++++|.+.-+.-++.+.
T Consensus 41 ~vilDls~v~~iDssg-i~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 90 (106)
T TIGR02886 41 HLILNLKNVTFMDSSG-LGVILGRYKKIK----NEGGEVIVCNVSPAVKRLFELS 90 (106)
T ss_pred EEEEECCCCcEecchH-HHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHh
Confidence 6799999987544332 233333333333 2457999999987777666543
No 21
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=29.61 E-value=1.6e+02 Score=27.71 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=40.3
Q ss_pred HHHHHHhhcccccceEEEEeCChHHHHHHHHHh-----hcCCHhhhcceEEeCCCCCHHHHHhhhc
Q 012901 392 AVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS-----PFLTQRTKSKFVFSGPSKSAETLFKYVY 452 (454)
Q Consensus 392 il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK-----pFL~~kTr~KI~fl~~sk~~etLlk~Id 452 (454)
++.+.|-.+- -+.++++|..-+++-++.+++ .|++++-++.|+|+. +.+.++++|.
T Consensus 116 ~~~~~qlg~~--~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d---~~~e~~~~i~ 176 (178)
T TIGR00730 116 VLTWAQLGIH--QKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVS---RPDELIEQVQ 176 (178)
T ss_pred HHHHHHcCCC--CCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcC---CHHHHHHHHH
Confidence 3444444432 357999998777788887655 578888888888886 5788888874
No 22
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=26.57 E-value=1e+02 Score=21.19 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=17.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMI 276 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~L 276 (454)
+.....+=|+.+++|++.|...|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHhC
Confidence 45677888888888988887754
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=26.37 E-value=94 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKN 278 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~ 278 (454)
++|.-++-.|+-|+.|+.+|.++|..
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 58999999999999999999999876
No 24
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=25.90 E-value=1.2e+02 Score=25.12 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=40.2
Q ss_pred EEEEEeCC-CCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeC
Q 012901 368 IVQINDLK-NSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSG 439 (454)
Q Consensus 368 iviIiDLk-G~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~ 439 (454)
+.+++|+. ++.++ + .......+.+... +...+.++=||..+.|...+.+++..| +..-+++.+
T Consensus 33 ~~ll~d~~~~~~~~---~-~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~----~~~~~~~F~ 96 (109)
T PF11964_consen 33 IRLLVDLRRDFEGW---S-PEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF----PPIEVRYFP 96 (109)
T ss_dssp EEEEEEEC-CEEEE---H-HHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH-----SSEEEEE-
T ss_pred eEEEEEecCccCCC---C-HHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc----CCCceEEEC
Confidence 56677877 65432 2 2333333443344 788889999999999999999999987 444555653
No 25
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=25.44 E-value=95 Score=32.40 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHh-hhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhccccceeeeeccCCCCCe
Q 012901 259 LKFL-RARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHP 315 (454)
Q Consensus 259 LRFL-RArkfDVekA~~~Lk~~l~WRk~~~id~i~~edl~~el~k~~fl~G~Dk~GrP 315 (454)
+||| |..+-.+..|.+||..|++-.+...... |.-.|+++|+.++|..
T Consensus 5 Yk~LSr~l~ihvn~AK~~L~ef~~~~~~k~~~~---------l~atYlvsG~~k~~~~ 53 (430)
T PF09507_consen 5 YKWLSRELGIHVNQAKQMLYEFHEKQNAKKPGS---------LHATYLVSGWLKDNGE 53 (430)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHHHHS-S----------EEEEEEEEEEESSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhccccCCCc---------eEEEEEEEEEeCCCCC
Confidence 5777 7778889999999999987765432222 2334667888777774
No 26
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=25.26 E-value=1.1e+02 Score=20.70 Aligned_cols=23 Identities=35% Similarity=0.262 Sum_probs=19.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMI 276 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~L 276 (454)
+....++-|+.+++|+++|...|
T Consensus 14 ~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 14 SREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Confidence 56788999999999999997754
No 27
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=24.84 E-value=95 Score=26.08 Aligned_cols=49 Identities=10% Similarity=-0.109 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHH
Q 012901 368 IVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNR 421 (454)
Q Consensus 368 iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwk 421 (454)
-.+|+||++++++...- ++.+..+...++ .+=..++|+|.+.-+.-++.
T Consensus 49 ~~vIlD~s~v~~iDssg-i~~L~~~~~~~~----~~g~~~~l~~~~~~v~~~l~ 97 (117)
T PF01740_consen 49 KNVILDMSGVSFIDSSG-IQALVDIIKELR----RRGVQLVLVGLNPDVRRILE 97 (117)
T ss_dssp SEEEEEETTESEESHHH-HHHHHHHHHHHH----HTTCEEEEESHHHHHHHHHH
T ss_pred eEEEEEEEeCCcCCHHH-HHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHH
Confidence 37799999987444322 344444444433 46788999999766655543
No 28
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=24.74 E-value=4.4e+02 Score=22.77 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCCC--CCCchhHHHHHHHHHHHHHhh--cccccceE-EEEeC---------ChHHHHHHHHHhhcCCHhh
Q 012901 366 CTIVQINDLKNSP--GPAKRDLRIATNQAVHLLQDN--YPEFVARQ-VFINV---------PWWYLAFNRMISPFLTQRT 431 (454)
Q Consensus 366 ~~iviIiDLkG~s--gl~~~~l~~~iK~il~lLqd~--YPErL~kI-~IINa---------P~~f~~lwkiIKpFL~~kT 431 (454)
..-++++.+.... ..+..++..++-..+..+... .+..+..+ +|++. +.++..++.++....+.++
T Consensus 19 GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~yp~~l 98 (158)
T smart00516 19 GRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERL 98 (158)
T ss_pred cCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHHhHHHh
Confidence 3456777777643 122223333332333333332 34444444 44432 3455666666666565555
Q ss_pred hcceEEeCCCCCHHHHHhh
Q 012901 432 KSKFVFSGPSKSAETLFKY 450 (454)
Q Consensus 432 r~KI~fl~~sk~~etLlk~ 450 (454)
++|.|++.+.....+.+.
T Consensus 99 -~~i~ivn~p~~~~~~~~~ 116 (158)
T smart00516 99 -GKVLIINPPWFFRVLWKI 116 (158)
T ss_pred -CeEEEECCCHHHHHHHHH
Confidence 777777765555555443
No 29
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=24.66 E-value=46 Score=33.60 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.2
Q ss_pred ceEEEEeCChHHHHHHHHHhhcCCHhh
Q 012901 405 ARQVFINVPWWYLAFNRMISPFLTQRT 431 (454)
Q Consensus 405 ~kI~IINaP~~f~~lwkiIKpFL~~kT 431 (454)
..|+|||+||.+..-.+.+-|||...+
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 579999999999999998888887654
No 30
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=24.37 E-value=1.3e+02 Score=26.49 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 012901 368 IVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEF 403 (454)
Q Consensus 368 iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPEr 403 (454)
+++++|.+|+ ++...|.+++..+..+++.+ +.+
T Consensus 1 i~vaiDtSGS--is~~~l~~fl~ev~~i~~~~-~~~ 33 (126)
T PF09967_consen 1 IVVAIDTSGS--ISDEELRRFLSEVAGILRRF-PAE 33 (126)
T ss_pred CEEEEECCCC--CCHHHHHHHHHHHHHHHHhC-CCC
Confidence 3678999985 55556677888888777765 444
No 31
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=22.65 E-value=3e+02 Score=22.46 Aligned_cols=50 Identities=8% Similarity=-0.078 Sum_probs=32.1
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI 423 (454)
.+|+||++++.+...- ..++..+...++. +=..++++|.+.-+.-++.+.
T Consensus 45 ~vvidls~v~~iDssg-l~~L~~~~~~~~~----~~~~~~l~~~~~~~~~~l~~~ 94 (108)
T TIGR00377 45 PIVLDLEDLEFMDSSG-LGVLLGRYKQVRR----VGGQLVLVSVSPRVARLLDIT 94 (108)
T ss_pred eEEEECCCCeEEcccc-HHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHHHHh
Confidence 5789999887544332 3445555544443 346899999987777666543
No 32
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=22.55 E-value=1.2e+02 Score=29.25 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=26.5
Q ss_pred eeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEe
Q 012901 365 ICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFIN 411 (454)
Q Consensus 365 v~~iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IIN 411 (454)
...+++++|.+|+ |.....++-.++..+...++ ++.-++|.+
T Consensus 57 ~~~lvvl~DvSGS----M~~~s~~~l~~~~~l~~~~~-~~~~f~F~~ 98 (222)
T PF05762_consen 57 PRRLVVLCDVSGS----MAGYSEFMLAFLYALQRQFR-RVRVFVFST 98 (222)
T ss_pred CccEEEEEeCCCC----hHHHHHHHHHHHHHHHHhCC-CEEEEEEee
Confidence 3478999999984 33334455566667777777 444444444
No 33
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.38 E-value=3.5e+02 Score=21.32 Aligned_cols=51 Identities=14% Similarity=-0.108 Sum_probs=30.9
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS 424 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK 424 (454)
.+|+|+++++.+...- ..++..+... +-.+=..+.|+|.+.-+.-++.++.
T Consensus 40 ~viid~~~v~~iDs~g-~~~L~~l~~~----~~~~g~~v~i~~~~~~~~~~l~~~g 90 (99)
T cd07043 40 RLVLDLSGVTFIDSSG-LGVLLGAYKR----ARAAGGRLVLVNVSPAVRRVLELTG 90 (99)
T ss_pred EEEEECCCCCEEcchh-HHHHHHHHHH----HHHcCCeEEEEcCCHHHHHHHHHhC
Confidence 5679999886443322 2333333332 2234477999999987777776653
No 34
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=21.88 E-value=3.1e+02 Score=21.99 Aligned_cols=50 Identities=12% Similarity=-0.092 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHH
Q 012901 368 IVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM 422 (454)
Q Consensus 368 iviIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwki 422 (454)
..+|+||++++.+.. ..+..+..+ ...+-.+=..++|.|.+.-+.-++..
T Consensus 42 ~~lilD~~~v~~iDs----s~~~~L~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~ 91 (107)
T cd07042 42 KVVILDLSAVNFIDS----TAAEALEEL-VKDLRKRGVELYLAGLNPQVRELLER 91 (107)
T ss_pred eEEEEECCCCchhhH----HHHHHHHHH-HHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 367899998763322 222233332 22333344789999999766555544
No 35
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.30 E-value=1.4e+02 Score=20.14 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.3
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMIK 277 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~Lk 277 (454)
+.....+-|+.+++|+++|...|.
T Consensus 14 ~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 14 SREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHh
Confidence 567888999999999999987663
No 36
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=20.45 E-value=3.6e+02 Score=22.03 Aligned_cols=49 Identities=6% Similarity=-0.173 Sum_probs=30.1
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM 422 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwki 422 (454)
.+|+||++++.+...- ...+..+...+ -.+=..++++|.+.-+.-++.+
T Consensus 41 ~vilDls~v~~iDssg-l~~L~~l~~~~----~~~g~~l~l~~~~~~v~~~l~~ 89 (100)
T cd06844 41 TIVIDISALEFMDSSG-TGVLLERSRLA----EAVGGQFVLTGISPAVRITLTE 89 (100)
T ss_pred EEEEECCCCcEEcHHH-HHHHHHHHHHH----HHcCCEEEEECCCHHHHHHHHH
Confidence 7799999886443322 23333333333 3345889999998777666654
Done!