Query 012901
Match_columns 454
No_of_seqs 210 out of 1208
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aua_A Phosphatidylinositol tr 100.0 8.4E-38 2.9E-42 309.3 17.1 197 250-453 47-254 (296)
2 1olm_A SEC14-like protein 2; l 100.0 8E-37 2.7E-41 315.0 17.2 194 252-453 32-234 (403)
3 3q8g_A CRAL-TRIO domain-contai 100.0 5.6E-37 1.9E-41 308.8 14.7 196 251-453 57-269 (320)
4 1r5l_A Alpha-TTP, protein (alp 100.0 3.6E-36 1.2E-40 291.1 18.8 190 247-452 25-222 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 1.7E-36 5.9E-41 304.3 14.5 186 251-453 88-281 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.1 4.6E-11 1.6E-15 116.7 5.6 129 302-452 11-140 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 5.1E-10 1.8E-14 111.2 4.0 130 302-453 30-160 (290)
8 2q3l_A Uncharacterized protein 63.7 31 0.0011 29.1 8.5 28 402-429 83-110 (126)
9 3sbx_A Putative uncharacterize 50.0 27 0.00091 32.0 6.1 60 389-453 125-189 (189)
10 1wgl_A TOLL-interacting protei 41.9 26 0.00091 26.1 3.8 27 252-278 22-48 (59)
11 2dna_A Unnamed protein product 33.3 37 0.0013 26.1 3.5 28 252-279 31-58 (67)
12 1z96_A DNA-damage, UBA-domain 33.1 46 0.0016 21.9 3.6 23 254-276 17-39 (40)
13 2dah_A Ubiquilin-3; UBA domain 33.0 49 0.0017 24.1 4.0 27 253-279 22-48 (54)
14 2ka5_A Putative anti-sigma fac 33.0 1.3E+02 0.0044 24.6 7.3 51 369-424 54-104 (125)
15 3qua_A Putative uncharacterize 32.2 76 0.0026 29.2 6.1 60 389-453 134-198 (199)
16 1sbo_A Putative anti-sigma fac 32.0 1.4E+02 0.0047 23.1 7.0 51 369-424 46-96 (110)
17 4dgh_A Sulfate permease family 30.8 1.5E+02 0.0051 24.2 7.4 50 369-423 51-100 (130)
18 2a33_A Hypothetical protein; s 30.4 91 0.0031 28.9 6.4 58 389-451 126-188 (215)
19 1wr1_B Ubiquitin-like protein 30.3 46 0.0016 24.7 3.5 27 253-279 30-56 (58)
20 3llo_A Prestin; STAS domain, c 30.1 1.5E+02 0.005 24.6 7.3 50 369-423 66-115 (143)
21 1ufz_A Hypothetical protein BA 29.5 65 0.0022 25.9 4.4 31 249-279 45-75 (83)
22 2dhy_A CUE domain-containing p 28.9 57 0.0019 25.0 3.9 28 252-279 31-58 (67)
23 4dgf_A Sulfate transporter sul 28.1 1.6E+02 0.0054 24.3 7.1 50 369-423 54-103 (135)
24 1v92_A NSFL1 cofactor P47; 3-h 27.9 44 0.0015 22.9 2.9 23 254-276 19-41 (46)
25 2knz_A Ubiquilin-4; cytoplasm, 26.6 53 0.0018 23.7 3.2 26 253-278 24-49 (53)
26 2bwb_A Ubiquitin-like protein 26.4 64 0.0022 22.7 3.5 25 253-277 20-44 (46)
27 2cp8_A NEXT to BRCA1 gene 1 pr 26.3 80 0.0027 23.3 4.1 28 252-279 21-48 (54)
28 2dal_A Protein KIAA0794; FAS a 24.6 68 0.0023 23.9 3.6 23 254-276 29-51 (62)
29 1ydh_A AT5G11950; structural g 24.3 1.5E+02 0.0052 27.4 6.8 56 391-451 124-184 (216)
30 1q02_A Sequestosome 1; helical 22.6 66 0.0023 23.6 3.0 24 254-277 25-48 (52)
31 3q8g_A CRAL-TRIO domain-contai 21.8 65 0.0022 31.4 3.8 31 72-102 23-53 (320)
32 2kln_A Probable sulphate-trans 21.7 1.3E+02 0.0046 24.5 5.4 49 369-422 50-98 (130)
33 1vej_A Riken cDNA 4931431F19; 21.3 83 0.0028 24.6 3.6 26 253-278 42-67 (74)
34 1otr_A Protein CUE2; protein-p 20.6 88 0.003 22.5 3.3 27 253-279 18-44 (49)
No 1
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=8.4e-38 Score=309.30 Aligned_cols=197 Identities=27% Similarity=0.385 Sum_probs=163.6
Q ss_pred CCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh---ccccc--eeeeeccCCCCCeEEEEecccc
Q 012901 250 GDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLG---NDLDK--VVFMHGVDKEGHPVCYNVFGEF 324 (454)
Q Consensus 250 ~d~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~id~i~~edl~---~el~k--~~fl~G~Dk~GrPViy~rlg~~ 324 (454)
+...||.+|+||||+|+||+++|.+||++++.||+.++++.++.+... ..+.+ ..+++|+|++||||+|+++|++
T Consensus 47 ~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~ 126 (296)
T 1aua_A 47 IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAV 126 (296)
T ss_dssp CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGC
T ss_pred CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccC
Confidence 456799999999999999999999999999999999998877653221 12222 2468999999999999999999
Q ss_pred cccccccccCCChHHHHHHHHHHHHHHHHHHHhhc-----cCCCCeeEEEEEEeCCCCCCCCch-hHHHHHHHHHHHHHh
Q 012901 325 QNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLD-----FSPSGICTIVQINDLKNSPGPAKR-DLRIATNQAVHLLQD 398 (454)
Q Consensus 325 d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld-----~~~~gv~~iviIiDLkG~sgl~~~-~l~~~iK~il~lLqd 398 (454)
|.+.+++.. ..+++++++++++|.+++.+. ..+..+.++++|+||+|++ +++. .+.++++.++.++|+
T Consensus 127 d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-~~~~~~~~~~~k~~~~~~q~ 200 (296)
T 1aua_A 127 NLHEMNKVT-----SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS-ISSAYSVMSYVREASYISQN 200 (296)
T ss_dssp CHHHHTTTC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 988765432 257899999999999876421 1134588999999999885 3222 235788999999999
Q ss_pred hcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 399 NYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 399 ~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
|||+||+++||||+||+|+++|++++|||+++|++||+|+++ ++.+.|++|||+
T Consensus 201 ~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~ 254 (296)
T 1aua_A 201 YYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPA 254 (296)
T ss_dssp HSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCS
T ss_pred hHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCH
Confidence 999999999999999999999999999999999999999986 368899999985
No 2
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8e-37 Score=314.96 Aligned_cols=194 Identities=24% Similarity=0.397 Sum_probs=164.7
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhcc-ccc--eeeeeccCCCCCeEEEEecccccccc
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGND-LDK--VVFMHGVDKEGHPVCYNVFGEFQNKE 328 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~id~i~~edl~~e-l~k--~~fl~G~Dk~GrPViy~rlg~~d~k~ 328 (454)
..+|.+||||||||+||+++|.+||++++.||+.++++.++. +..++ +.. ..+++|+|++||||+|+++|++|+++
T Consensus 32 ~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~ 110 (403)
T 1olm_A 32 NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKG 110 (403)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHH
T ss_pred CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHH
Confidence 479999999999999999999999999999999999888765 22222 211 23479999999999999999999987
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHhhccC----CCCeeEEEEEEeCCCCCCCCch--hHHHHHHHHHHHHHhhccc
Q 012901 329 LYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS----PSGICTIVQINDLKNSPGPAKR--DLRIATNQAVHLLQDNYPE 402 (454)
Q Consensus 329 l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~----~~gv~~iviIiDLkG~sgl~~~--~l~~~iK~il~lLqd~YPE 402 (454)
+++.. +.+++++++++++|.+++.+..+ +.++.++++|+||+|++ +.+. ...++++.++.++|+|||+
T Consensus 111 l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l~~~~~~~~~~~k~~~~~lq~~YPe 184 (403)
T 1olm_A 111 LLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-LKHLWKPAVEAYGEFLCMFEENYPE 184 (403)
T ss_dssp HHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-GGGGCHHHHHHHHHHHHHHHHHSTT
T ss_pred hhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCC-HHHHhhHHHHHHHHHHHHHHhhCcH
Confidence 75532 25889999999999999876542 33588999999999986 3322 1357899999999999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 403 FVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 403 rL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
||+++||||+||+|+++|++++|||+++|++||+|+++ ++.+.|++|||+
T Consensus 185 rl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~ 234 (403)
T 1olm_A 185 TLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISP 234 (403)
T ss_dssp CEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCG
T ss_pred hhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcCh
Confidence 99999999999999999999999999999999999986 457799999985
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.6e-37 Score=308.75 Aligned_cols=196 Identities=27% Similarity=0.440 Sum_probs=162.4
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhc---------ccc--ceeeeeccCCCCCeEEEE
Q 012901 251 DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGN---------DLD--KVVFMHGVDKEGHPVCYN 319 (454)
Q Consensus 251 d~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~id~i~~edl~~---------el~--k~~fl~G~Dk~GrPViy~ 319 (454)
...||.+||||||||+||+++|.+||+++++||+.+++|.++.+.... .+. ...|++|+|++||||+|+
T Consensus 57 ~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~ 136 (320)
T 3q8g_A 57 ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFA 136 (320)
T ss_dssp SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEE
Confidence 467999999999999999999999999999999999998876532111 122 236789999999999999
Q ss_pred ecccccccccccccCCChHHHHHHHHHHHHHHHHHHHh-hc----cCCCCeeEEEEEEeCCCCCCCCc-hhHHHHHHHHH
Q 012901 320 VFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRK-LD----FSPSGICTIVQINDLKNSPGPAK-RDLRIATNQAV 393 (454)
Q Consensus 320 rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~-ld----~~~~gv~~iviIiDLkG~sgl~~-~~l~~~iK~il 393 (454)
++|+++..++++.+ ..+++++++++.+|.+++. +. ..+..+.++++|+||+|++ +++ ..+..+++.++
T Consensus 137 r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~s-l~~~~~~~~~~k~~~ 210 (320)
T 3q8g_A 137 ELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGIS-LSNAYHVLSYIKDVA 210 (320)
T ss_dssp ECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC-HHHHHHTHHHHHHHH
T ss_pred eccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCC-HHHHHHHHHHHHHHH
Confidence 99999988875443 2478899999999988752 11 1133578899999999885 222 12246789999
Q ss_pred HHHHhhcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 394 HLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 394 ~lLqd~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
.++|+|||+||+++||||+||+|+++|++++|||+++|++||+|++++ +.++|++|||+
T Consensus 211 ~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~-~~~~L~~~i~~ 269 (320)
T 3q8g_A 211 DISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS-YKKELLKQIPI 269 (320)
T ss_dssp HHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTT-HHHHHHHHSCG
T ss_pred HHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCC-cHHHHHhhCCh
Confidence 999999999999999999999999999999999999999999999863 57899999986
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.6e-36 Score=291.14 Aligned_cols=190 Identities=24% Similarity=0.339 Sum_probs=156.8
Q ss_pred CCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC-C-CCcccchhhcccc-c-eeeeeccCCCCCeEEEEecc
Q 012901 247 PLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG-I-DAVLEEDLGNDLD-K-VVFMHGVDKEGHPVCYNVFG 322 (454)
Q Consensus 247 Pll~d~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~-i-d~i~~edl~~el~-k-~~fl~G~Dk~GrPViy~rlg 322 (454)
|+++...+|.+|+||||+|+||+++|.+||++++.||+.++ + +.+....+...+. + ..+++|+|++||||+|+++|
T Consensus 25 ~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~ 104 (262)
T 1r5l_A 25 PLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIA 104 (262)
T ss_dssp CCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGG
T ss_pred ccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEecc
Confidence 45566789999999999999999999999999999999986 2 2222222221121 2 35688999999999999999
Q ss_pred cccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCchhH----HHHHHHHHHHHHh
Q 012901 323 EFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDL----RIATNQAVHLLQD 398 (454)
Q Consensus 323 ~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~~l----~~~iK~il~lLqd 398 (454)
+++++.+ +..++++++++++|.+++..+ .++.|+++|+|++|++ +.++ .++++.++.++|+
T Consensus 105 ~~d~~~~---------~~~~~~r~~~~~~E~~~~~~~---~~~~g~~~I~D~~g~s---~~~~~~~~~~~~k~~~~~~q~ 169 (262)
T 1r5l_A 105 HWDPKVF---------TAYDVFRVSLITSELIVQEVE---TQRNGIKAIFDLEGWQ---FSHAFQITPSVAKKIAAVLTD 169 (262)
T ss_dssp GCCTTTS---------CHHHHHHHHHHHHHHHTTSHH---HHHHCEEEEEECTTCC---HHHHHHCCHHHHHHHHHHHHT
T ss_pred ccCcccC---------CHHHHHHHHHHHHHHHHhChh---hcccceEEEEECCCCC---HHHHhccCHHHHHHHHHHHHh
Confidence 9887653 146789999999998775443 2467899999999885 3332 4679999999999
Q ss_pred hcccccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhc
Q 012901 399 NYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVY 452 (454)
Q Consensus 399 ~YPErL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Id 452 (454)
|||+||+++||||+||+|+++|++++|||+++|++||+|+++ ++.++|++|||
T Consensus 170 ~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~ 222 (262)
T 1r5l_A 170 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP 222 (262)
T ss_dssp SSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST
T ss_pred hCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh
Confidence 999999999999999999999999999999999999999986 46799999996
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.7e-36 Score=304.26 Aligned_cols=186 Identities=20% Similarity=0.404 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcC--CCCcccchhhcccc-c-eeeeeccCCCCCeEEEEecccccc
Q 012901 251 DDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFG--IDAVLEEDLGNDLD-K-VVFMHGVDKEGHPVCYNVFGEFQN 326 (454)
Q Consensus 251 d~~dD~~LLRFLRArkfDVekA~~~Lk~~l~WRk~~~--id~i~~edl~~el~-k-~~fl~G~Dk~GrPViy~rlg~~d~ 326 (454)
...||.+|+||||+|+||+++|.+||.+|+.||+.++ ++.+...++...+. + .++++|+|++||||+|+++|++++
T Consensus 88 ~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~ 167 (316)
T 3hx3_A 88 QEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQS 167 (316)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCC
Confidence 4679999999999999999999999999999999987 23343333322222 2 356789999999999999999987
Q ss_pred cccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCCchhH----HHHHHHHHHHHHhhccc
Q 012901 327 KELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDL----RIATNQAVHLLQDNYPE 402 (454)
Q Consensus 327 k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~~~~l----~~~iK~il~lLqd~YPE 402 (454)
..+ +.+++++++++++|.+++.. ..++.|+++|+||+|++ +.++ .++++.++.++|+|||+
T Consensus 168 ~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~s---l~~~~~~~~~~~k~~~~~lq~~YPe 232 (316)
T 3hx3_A 168 QEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGFT---MQQAASLRTSDLRKMVDMLQDSFPA 232 (316)
T ss_dssp TTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTCC---HHHHHHCCHHHHHHHHHHHHTTSTT
T ss_pred CCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCCC---HHHhccCChHHHHHHHHHHHHhhhh
Confidence 653 25789999999999987543 34678999999999885 3332 36789999999999999
Q ss_pred ccceEEEEeCChHHHHHHHHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 403 FVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 403 rL~kI~IINaP~~f~~lwkiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
||+++||||+||+|+++|++++|||+++|++||+|+++ +.++|++|||+
T Consensus 233 rL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~--~~~~L~~~I~~ 281 (316)
T 3hx3_A 233 WFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD--DLSGFYQEIDE 281 (316)
T ss_dssp TEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET--CCHHHHHHSCG
T ss_pred hhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC--CHHHHHhhCCH
Confidence 99999999999999999999999999999999999975 46799999986
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.11 E-value=4.6e-11 Score=116.70 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=99.0
Q ss_pred ceeeeeccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCC
Q 012901 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (454)
Q Consensus 302 k~~fl~G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~ 381 (454)
+.+|-.|.|++||||+|+..++++...+ | ++.++.+.+..++.++. ..+.+|+|++|.+..+
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~------D---~e~Ll~~vl~tl~~~~~---------~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI------N---GDLLIYHVLLTLKPYYA---------KPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB------C---HHHHHHHHHHHHTTTTT---------SCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC------C---HHHHHHHHHHHHHHhcC---------CCeEEEEECCCCCccc
Confidence 3466679999999999999999876432 1 45566666555554321 2478999999987433
Q ss_pred chhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHH-HhhcCCHhhhcceEEeCCCCCHHHHHhhhc
Q 012901 382 KRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM-ISPFLTQRTKSKFVFSGPSKSAETLFKYVY 452 (454)
Q Consensus 382 ~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwki-IKpFL~~kTr~KI~fl~~sk~~etLlk~Id 452 (454)
... .++++.+..++...|...|+++||+|+++||+..|+. .++|.+.+..+|+++++ +..+|.++|+
T Consensus 73 ~p~-~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~ 140 (256)
T 3pg7_A 73 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIE 140 (256)
T ss_dssp CCC-HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSC
T ss_pred CCc-HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcC
Confidence 333 6789999999999999999999999999999977665 45666668889999997 4678888885
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.90 E-value=5.1e-10 Score=111.23 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=92.5
Q ss_pred ceeeeeccCCCCCeEEEEecccccccccccccCCChHHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEeCCCCCCCC
Q 012901 302 KVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPA 381 (454)
Q Consensus 302 k~~fl~G~Dk~GrPViy~rlg~~d~k~l~~~tf~d~e~~~~flr~~i~llE~~i~~ld~~~~gv~~iviIiDLkG~sgl~ 381 (454)
+.+|-.|.|++||||+|+..++++...+ | ++.++-+.+..++..+ -..+.+|+|+++.+..+
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~------D---~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI------N---GDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB------C---HHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC------C---HHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCccC
Confidence 3455668999999999999999875433 2 4555555554544332 13578999999987433
Q ss_pred chhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHH-HHHhhcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 382 KRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFN-RMISPFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 382 ~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lw-kiIKpFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
... .++++.+..++...|...|+++||+|+++||+..+ .++++|.+.+..+|+++++.. ..|..||++
T Consensus 92 ~p~-~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~---~~L~~~i~~ 160 (290)
T 3peg_A 92 RFK-TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP---GKLAEHIEH 160 (290)
T ss_dssp CCC-HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS---CC-------
T ss_pred CCh-HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH---HHHHhhCCH
Confidence 233 67899999999999999999999999999998755 566778888889999998752 347777754
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=63.66 E-value=31 Score=29.07 Aligned_cols=28 Identities=14% Similarity=-0.070 Sum_probs=25.7
Q ss_pred cccceEEEEeCChHHHHHHHHHhhcCCH
Q 012901 402 EFVARQVFINVPWWYLAFNRMISPFLTQ 429 (454)
Q Consensus 402 ErL~kI~IINaP~~f~~lwkiIKpFL~~ 429 (454)
..+.|+=||-.+.|+..+.+++++|++-
T Consensus 83 ~~~~RiAvV~d~~W~~~~~~~~~~~~~~ 110 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQEWATRVANWFTPG 110 (126)
T ss_dssp GGEEEEEEECCSHHHHHHHHHHHHHCSS
T ss_pred hcCCEEEEEcChHHHHHHHHHHhhccCC
Confidence 6789999999999999999999999775
No 9
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=50.00 E-value=27 Score=32.04 Aligned_cols=60 Identities=3% Similarity=-0.046 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh-----hcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 389 TNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS-----PFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 389 iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK-----pFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
+-.++.+.|-.+- -+.++++|..-+++-++.++. -||+++.++.|++.. +.++++++|.|
T Consensus 125 lfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d---~~ee~~~~l~~ 189 (189)
T 3sbx_A 125 LLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD---NLDDALQACAP 189 (189)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES---SHHHHHHHHCC
T ss_pred HHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC---CHHHHHHHhcC
Confidence 3344444554442 368999999767777776654 489999999999997 58899999875
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.87 E-value=26 Score=26.14 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKN 278 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~ 278 (454)
..+...|-.-|+++++|++.|+.+|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 468899999999999999999999875
No 11
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.30 E-value=37 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.053 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
+.++...+|=|++.++|+++|+..|.++
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3566677999999999999999988754
No 12
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.06 E-value=46 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=18.9
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMI 276 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~L 276 (454)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55666889999999999998765
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.04 E-value=49 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
.++...++-|+++++|+++|...|.++
T Consensus 22 ~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 22 LNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345567999999999999999988764
No 14
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=33.01 E-value=1.3e+02 Score=24.62 Aligned_cols=51 Identities=2% Similarity=-0.226 Sum_probs=33.2
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS 424 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK 424 (454)
.+|+||++++.+...- ...+..+...++ .+=..+.++|++.-+.-++.+..
T Consensus 54 ~vvlDls~V~~iDSsG-l~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFS-LGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp EEEEECTTCSCCCHHH-HHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred EEEEECCCCCEEcHHH-HHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 5799999987555433 334444444333 23478999999988777776543
No 15
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=32.23 E-value=76 Score=29.21 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh-----hcCCHhhhcceEEeCCCCCHHHHHhhhcc
Q 012901 389 TNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS-----PFLTQRTKSKFVFSGPSKSAETLFKYVYL 453 (454)
Q Consensus 389 iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK-----pFL~~kTr~KI~fl~~sk~~etLlk~Idp 453 (454)
+-.++.+.|-.+. -+.++++|..-+++-++.++. -|++++.++.|++.. +.++++++|.+
T Consensus 134 l~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d---~~~e~~~~l~~ 198 (199)
T 3qua_A 134 FFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVD---NVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEES---SHHHHHHHHSC
T ss_pred HHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeC---CHHHHHHHHhc
Confidence 3444555555543 368999999777788887765 478888999999997 58899888754
No 16
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=31.98 E-value=1.4e+02 Score=23.10 Aligned_cols=51 Identities=4% Similarity=-0.188 Sum_probs=32.0
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHHh
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS 424 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK 424 (454)
.+|+||++++.+...- ...+..+...++ .+=..+.++|.+.-+.-++.+..
T Consensus 46 ~vvlDls~v~~iDssg-l~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 96 (110)
T 1sbo_A 46 KIVLDLSSVSYMDSAG-LGTLVVILKDAK----INGKEFILSSLKESISRILKLTH 96 (110)
T ss_dssp EEEEECTTCCCBCHHH-HHHHHHHHHHHH----HTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCcEEccHH-HHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHhC
Confidence 4599999987554332 334444443333 34478999999987777766543
No 17
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=30.78 E-value=1.5e+02 Score=24.21 Aligned_cols=50 Identities=8% Similarity=-0.115 Sum_probs=32.6
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI 423 (454)
.+|+||++++.+...- ...+..+... +-.+=.+++|+|+..-+.-++.+.
T Consensus 51 ~vvlDls~v~~iDssg-l~~L~~~~~~----~~~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 51 ILILRLKWVPFMDITG-IQTLEEMIQS----FHKRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp EEEEECTTCCCCCHHH-HHHHHHHHHH----HHTTTCEEEEECCCHHHHHHHHHT
T ss_pred EEEEECCCCCcccHHH-HHHHHHHHHH----HHHCCCEEEEEcCCHHHHHHHHHc
Confidence 6899999987554333 3333344333 334668999999987776666553
No 18
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=30.38 E-value=91 Score=28.92 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH-----hhcCCHhhhcceEEeCCCCCHHHHHhhh
Q 012901 389 TNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI-----SPFLTQRTKSKFVFSGPSKSAETLFKYV 451 (454)
Q Consensus 389 iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI-----KpFL~~kTr~KI~fl~~sk~~etLlk~I 451 (454)
+-.++.+.|-.+ .-+.++++|..-+++-++.++ .-|+++..++.|++.. +.+.++++|
T Consensus 126 lfE~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d---~~ee~~~~l 188 (215)
T 2a33_A 126 LLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAP---TAKELVKKL 188 (215)
T ss_dssp HHHHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEES---SHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeC---CHHHHHHHH
Confidence 334455555443 346799999975667777765 3589999999999997 477777766
No 19
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.28 E-value=46 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=22.7
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
.++...++=|+++++|+++|...|.++
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456677999999999999999988653
No 20
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=30.12 E-value=1.5e+02 Score=24.58 Aligned_cols=50 Identities=8% Similarity=-0.143 Sum_probs=32.3
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI 423 (454)
.+|+||++++.+...- ...+..+.. .+-.+=..++|+|.+.-+.-++.+.
T Consensus 66 ~vvlDls~v~~iDssg-l~~L~~~~~----~~~~~g~~l~l~~~~~~v~~~l~~~ 115 (143)
T 3llo_A 66 TVILDFTQVNFMDSVG-VKTLAGIVK----EYGDVGIYVYLAGCSAQVVNDLTSN 115 (143)
T ss_dssp EEEEECTTCCCCCHHH-HHHHHHHHH----HHHTTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCccccHHH-HHHHHHHHH----HHHHCCCEEEEEeCCHHHHHHHHhC
Confidence 6899999987554433 233333333 3345668999999987766666543
No 21
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=29.46 E-value=65 Score=25.88 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 249 LGDDRSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 249 l~d~~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
+.+...|..|.+-...++||+++|+..|.+.
T Consensus 45 lGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 45 LGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp TTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4567799999999999999999999998764
No 22
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=57 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
..+...|..-|+++++|++.|+..|.+.
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3578889999999999999999988754
No 23
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=28.05 E-value=1.6e+02 Score=24.32 Aligned_cols=50 Identities=10% Similarity=-0.127 Sum_probs=32.2
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwkiI 423 (454)
.+|+||++++.+...- ...+..+...+ -.+=.+++|+|...-+.-++.+.
T Consensus 54 ~vvlDls~v~~iDssg-l~~L~~~~~~~----~~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 54 VFILRMRRVPVIDATG-MHALWEFQESC----EKRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp EEEEECTTCSCBCHHH-HHHHHHHHHHH----HHHTCEEEEESCCHHHHHHHHHH
T ss_pred EEEEEcCCCCccCHHH-HHHHHHHHHHH----HHCCCEEEEEcCCHHHHHHHHHc
Confidence 6899999987554332 23333333333 34668999999987776666553
No 24
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=27.91 E-value=44 Score=22.86 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.3
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMI 276 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~L 276 (454)
+...-..||.+++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67888999999999999998765
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.59 E-value=53 Score=23.65 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKN 278 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~ 278 (454)
.+....++-|+++++|++.|...|..
T Consensus 24 ~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 24 INREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 37778889999999999999998865
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=26.38 E-value=64 Score=22.66 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=21.1
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIK 277 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk 277 (454)
.++...++=|+++++|+++|...|.
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556679999999999999998875
No 27
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.32 E-value=80 Score=23.29 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 252 DRSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 252 ~~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
++|...-.|-|+..++|+++|+..|.+.
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5678888999999999999999887653
No 28
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.57 E-value=68 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.4
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMI 276 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~L 276 (454)
+...-..||.+++||++.|+..+
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 57888999999999999998775
No 29
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=24.32 E-value=1.5e+02 Score=27.41 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHHHHhhcccccceEEEEeCChHHHHHHHHHh-----hcCCHhhhcceEEeCCCCCHHHHHhhh
Q 012901 391 QAVHLLQDNYPEFVARQVFINVPWWYLAFNRMIS-----PFLTQRTKSKFVFSGPSKSAETLFKYV 451 (454)
Q Consensus 391 ~il~lLqd~YPErL~kI~IINaP~~f~~lwkiIK-----pFL~~kTr~KI~fl~~sk~~etLlk~I 451 (454)
.++.+.|-.+ .-+.++++|..-+++-++.++. -||++..++.|.+.. +.++++++|
T Consensus 124 E~lt~~qlg~--~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d---~~ee~~~~l 184 (216)
T 1ydh_A 124 EMITWSQLGI--HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAP---TAKELMEKM 184 (216)
T ss_dssp HHHHHHHHTS--CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEES---SHHHHHHHH
T ss_pred HHHHHHHhcc--cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeC---CHHHHHHHH
Confidence 3444444443 3467999998766666666543 589999999999997 577777766
No 30
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=22.59 E-value=66 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.1
Q ss_pred CHHHHHHHhhhcCCCHHHHHHHHH
Q 012901 254 SDTILLKFLRARDFKVKDAFTMIK 277 (454)
Q Consensus 254 dD~~LLRFLRArkfDVekA~~~Lk 277 (454)
.-.+|.|.|.+.+||+.+|+..|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 447999999999999999998764
No 31
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=21.84 E-value=65 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCccccccccCCCCchHHHHHHHHHHHHHHH
Q 012901 72 ASFKEESNVVGELPDPQKKALDELKQLIQDA 102 (454)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (454)
.+..--|-.+++|.+.|+.+|++||+.|++.
T Consensus 23 ~~~~~~~g~~~~lt~~q~~~l~~lR~~l~~~ 53 (320)
T 3q8g_A 23 CSPNALPGTPGNLTKEQEEALLQFRSILLEK 53 (320)
T ss_dssp CCTTSCTTSTTCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3444566778999999999999999999864
No 32
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.74 E-value=1.3e+02 Score=24.51 Aligned_cols=49 Identities=10% Similarity=-0.212 Sum_probs=30.6
Q ss_pred EEEEeCCCCCCCCchhHHHHHHHHHHHHHhhcccccceEEEEeCChHHHHHHHH
Q 012901 369 VQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRM 422 (454)
Q Consensus 369 viIiDLkG~sgl~~~~l~~~iK~il~lLqd~YPErL~kI~IINaP~~f~~lwki 422 (454)
.+|+||++++.+...- ...+..+...++ .+=..++|+|.+.-+.-++.+
T Consensus 50 ~vvlDls~v~~iDssg-l~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 98 (130)
T 2kln_A 50 WFVLNAESNVEVDLTA-LDALDQLRTELL----RRGIVFAMARVKQDLRESLRA 98 (130)
T ss_dssp EEEEECSCCSSSBCST-TTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHH
T ss_pred EEEEECCCCChhhHHH-HHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 6799999987554333 233334444333 345678999998766655554
No 33
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.32 E-value=83 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKN 278 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~ 278 (454)
.++...++=|++.++|+++|+..|..
T Consensus 42 ~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 42 ANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46677799999999999999998764
No 34
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=20.64 E-value=88 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.6
Q ss_pred CCHHHHHHHhhhcCCCHHHHHHHHHHH
Q 012901 253 RSDTILLKFLRARDFKVKDAFTMIKNT 279 (454)
Q Consensus 253 ~dD~~LLRFLRArkfDVekA~~~Lk~~ 279 (454)
.+-..+-+-|+.+++|++.|..+|.+.
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456677788999999999999998764
Done!