Query 012902
Match_columns 454
No_of_seqs 440 out of 1178
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 18:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1E-43 3.4E-48 343.8 31.7 394 42-447 26-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.3E-42 1.1E-46 331.9 35.6 371 42-441 24-427 (438)
3 2gfp_A EMRD, multidrug resista 100.0 3.7E-39 1.3E-43 304.1 12.8 351 57-435 11-365 (375)
4 4gc0_A D-xylose-proton symport 100.0 2E-36 6.9E-41 295.9 30.3 389 56-452 22-468 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 7.2E-36 2.5E-40 291.9 33.0 366 76-448 49-473 (491)
6 2cfq_A Lactose permease; trans 100.0 3E-33 1E-37 267.2 19.7 372 61-452 22-405 (417)
7 2xut_A Proton/peptide symporte 100.0 8.1E-30 2.8E-34 251.1 23.6 156 65-221 31-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 4E-15 1.4E-19 143.1 15.4 165 58-222 264-433 (451)
9 2cfq_A Lactose permease; trans 99.6 1.8E-14 6E-19 137.2 14.2 146 80-227 258-404 (417)
10 3o7q_A L-fucose-proton symport 99.5 1.2E-13 4.2E-18 132.2 16.3 146 65-215 277-425 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.5 1.6E-12 5.6E-17 126.4 20.8 175 263-446 13-196 (491)
12 2xut_A Proton/peptide symporte 99.5 2.5E-12 8.6E-17 126.2 18.7 175 262-445 11-197 (524)
13 4gc0_A D-xylose-proton symport 99.4 1E-11 3.4E-16 120.8 17.1 169 60-229 291-469 (491)
14 2gfp_A EMRD, multidrug resista 99.3 3.5E-12 1.2E-16 119.4 11.1 167 267-443 4-171 (375)
15 3mkt_A Multi antimicrobial ext 76.8 47 0.0016 30.7 25.6 32 154-185 142-173 (460)
16 2g9p_A Antimicrobial peptide l 55.8 3.6 0.00012 19.6 0.6 14 100-113 2-15 (26)
17 2jln_A MHP1; hydantoin, transp 42.8 2.2E+02 0.0075 26.8 21.6 52 164-215 19-72 (501)
18 3iyz_A Aquaporin-4; water tran 31.3 2.8E+02 0.0094 24.6 12.4 23 198-220 243-265 (340)
19 2dw3_A Intrinsic membrane prot 27.5 1.2E+02 0.004 20.0 4.4 30 201-230 32-61 (77)
20 2l2t_A Receptor tyrosine-prote 22.3 1E+02 0.0035 17.9 3.1 6 443-448 31-36 (44)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1e-43 Score=343.81 Aligned_cols=394 Identities=15% Similarity=0.181 Sum_probs=308.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhchhhhhcchhhhhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHH
Q 012902 42 YKQIISLCVGNFEQIFIVFGQVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 121 (454)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (454)
+++.+.......+ ...++.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus 26 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYA--AYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHH--HHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 3455555555555 68888889999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh----cccccHHHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHHhHHHHHhh
Q 012902 122 SIATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH 197 (454)
Q Consensus 122 ~~~~~l~~~----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~~l~~~l~~ 197 (454)
+++.+++++ ++ |++.++++|+++|++.+...+...+++.|++|+|+|++++++.+.+.++|.++||.+++.+.+
T Consensus 103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 88 999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ccC-cchhHHHHhHHHHHHHHHHHHhcCCCCCCCCCCChhhhhhhhh---cccc--CCCCCCcchhHhhcCcchHHHHHH
Q 012902 198 RFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVS---SCAS--KEPVKTIPWGLILSKPPVWALIVS 271 (454)
Q Consensus 198 ~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 271 (454)
..| ||+.|++.++++++..++.++..||+|++.+..++++.+...+ +.++ +.+.++...++.+|+|.++...+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 898 9999999999988877777777888765533222111110000 0000 111111124677889999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCcccchhhHhHHHHHHHHHHHHHHHHHhhhh--hhcCccchhhHHHHHHHHHHH-H
Q 012902 272 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLG-P 348 (454)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~-~ 348 (454)
.++..........++|.|+++.+|+++.+++.......++.+++.++.+++.||+ ++|+. ......... .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~-------~~~~~~~~~~~ 333 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA-------TGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-------HHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999999999999999 77732 222211111 1
Q ss_pred HHHHHHhhccChhH-HHHHHHHHHHhhhhhhcchhhhhhcccccccchhHHHHHHHHHHH-HHHHHHHHHHHHhccCCch
Q 012902 349 AFFLTQLSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWD 426 (454)
Q Consensus 349 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 426 (454)
...........+.+ ......+.+.+.............+..|+++|+++.|+.+...++ |..++|.+.|.+.|..|++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~ 413 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 413 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 22222211212333 333333444433333333334444556667899999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 012902 427 DVFKVSVGLYLVGTAVWNLFS 447 (454)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~ 447 (454)
..|++.+++.+++.++..+..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777666543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.3e-42 Score=331.88 Aligned_cols=371 Identities=13% Similarity=0.137 Sum_probs=291.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhchhhhhcchhhhhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHH
Q 012902 42 YKQIISLCVGNFEQIFIVFGQVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW 121 (454)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 121 (454)
++..+..+...++ ..+++....++..|.+.+++|.|+.+.|++.+.+.++..++++++|+++||+|||+++..+.++.
T Consensus 24 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFF--LWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444555 67788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh---hhcccccHHHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHHhHHHHHh-h
Q 012902 122 SIATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-H 197 (454)
Q Consensus 122 ~~~~~l~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~~l~~~l~-~ 197 (454)
+++.+++ ++++ +++.++++|+++|++.+...+...++++|++|+|+|++++++.+.+.++|..++|.+++.+. +
T Consensus 102 ~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 102 ALGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 8889 99999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred ccC-------------------------cchhHHHHhHHHHHHHHHHHHh-cCCCCCCCCCCChhhhhhhhhccccCCCC
Q 012902 198 RFG-------------------------WPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQLRPAEKKLIVSSCASKEPV 251 (454)
Q Consensus 198 ~~g-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (454)
..+ ||+.|++.+.+.++..++.++. .||+++++++.+ +++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-------------~~~~ 246 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA-------------KQGS 246 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-------------STTS
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-------------cccc
Confidence 554 9999988887777665554442 233322211111 1111
Q ss_pred CCcchhHhhcCcchHHHHHHHHHHHHHHHHHHhhHHHH-HHHHhCCcccchhhHhHHHHHHHHHHHHHHHHHhhhhhhcC
Q 012902 252 KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 330 (454)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~ 330 (454)
.+.++++++|+|.++...+..++..........++|.| +++.+|.++.+++.......++.++++++.+++.||+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 23467788999999999999999988899999999999 88888999999999999999999999999999999999984
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhhhhhcchhhhh-hcccccccchhHHHHHHHHHHHHH
Q 012902 331 LSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAG 409 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~ 409 (454)
.. . .+..............+.........+.+.+..... +..... .++.+++ ++.+.++.. ...+|+
T Consensus 327 ~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~ 394 (438)
T 3o7q_A 327 VL-------A--AYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG 394 (438)
T ss_dssp HH-------H--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHH
T ss_pred HH-------H--HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHH
Confidence 22 2 222222222222233344444444445554444444 444444 4555544 888888876 678999
Q ss_pred HHHHHHHHHHhccCC-chhHHHHHHHHHHHHHH
Q 012902 410 VFGTAATGYILQHGS-WDDVFKVSVGLYLVGTA 441 (454)
Q Consensus 410 ~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 441 (454)
.++|.+.|.+.|..| ++..|++.+++.++..+
T Consensus 395 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999999977 99999877666555444
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.7e-39 Score=304.09 Aligned_cols=351 Identities=14% Similarity=0.107 Sum_probs=283.5
Q ss_pred HHhhhchhhhhcchhhhhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHHhhhhhcccccH
Q 012902 57 FIVFGQVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGL 136 (454)
Q Consensus 57 ~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (454)
...++...+.+.+|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++++++ |+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~ 88 (375)
T 2gfp_A 11 VGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SL 88 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cH
Confidence 5778888889999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHHhHHHHHhhccCcchhHHHHhHHHHHHH
Q 012902 137 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 216 (454)
Q Consensus 137 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 216 (454)
+.+++.|+++|++.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+.++.|||+.|++.+++.++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999888887776
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhhhhccccCCCCCCcchhHhhcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCC
Q 012902 217 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 296 (454)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 296 (454)
+...+..||++++++++ ++.+.++++.+|+|+++...+..++..........+.|.|+++.+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (375)
T 2gfp_A 169 FSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL 232 (375)
T ss_dssp CCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 65556666655432211 01134566788999999999999999999999999999999998899
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHHHhhhhhhcCccchhhHHHHHHHHH-HHHHHH--HHHhhccChhHHH-HHHHHHHH
Q 012902 297 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFF--LTQLSHVDSPAMA-VLCMACSQ 372 (454)
Q Consensus 297 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ 372 (454)
++.+++.......++.++++++.+++.||.+++ ....... ...+.. .......++.+.. ....+.+.
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 303 (375)
T 2gfp_A 233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF 303 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999873 1111111 111111 1111111223322 33334444
Q ss_pred hhhhhhcchhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 012902 373 GTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGL 435 (454)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 435 (454)
+.+. ..+.......+..|++|+++.|+.+...++|..++|.+.|.+.+..++...+.+.+..
T Consensus 304 ~~~~-~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~ 365 (375)
T 2gfp_A 304 GAGM-LFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG 365 (375)
T ss_dssp HHHH-TSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 4433 3444444444444589999999999999999999999999999888887777664433
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2e-36 Score=295.89 Aligned_cols=389 Identities=14% Similarity=0.108 Sum_probs=267.8
Q ss_pred HHHhhhchhhhhcchhhhhhcCC--------ChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHHhh
Q 012902 56 IFIVFGQVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATAL 127 (454)
Q Consensus 56 ~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~l 127 (454)
+..++|...++..+|.++++++. +.++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~ 101 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVG 101 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 37889999999999999888743 2456789999999999999999999999999999999999999999999
Q ss_pred hhh------------------cccccHHHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHH
Q 012902 128 TPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL 189 (454)
Q Consensus 128 ~~~------------------~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~ 189 (454)
+++ ++ |+++++++|+++|++.|...+....+++|+.|+++|++..++.+.+..+|..+++
T Consensus 102 ~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~ 179 (491)
T 4gc0_A 102 SAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVY 179 (491)
T ss_dssp HHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhh
Confidence 884 67 9999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc--------cCcchhHHHHhHHHHHHHHHHHHhcCCCCCCCCCCChhhhhhh-----------hhc-----c
Q 012902 190 AFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI-----------VSS-----C 245 (454)
Q Consensus 190 ~l~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-----~ 245 (454)
.++..+... .+||+.+.+..+..++. ++..+..||+|+....+.+.++... .++ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 258 (491)
T 4gc0_A 180 CVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH 258 (491)
T ss_dssp HHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHH
Confidence 888877643 34777777766665555 4455668898864221111111000 000 0
Q ss_pred ccCCCCCCcchhHhhcCcchHHHHHHHHH-HHHHHHHHHhhHHHHHHHHhCCcccchhhHhHHHHHHHHHHHHHHHHHhh
Q 012902 246 ASKEPVKTIPWGLILSKPPVWALIVSHFC-HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD 324 (454)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 324 (454)
..++..+.......++.+..........+ .....+.+..+.|.+.++ .+.+...........++...++.++.+++.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d 337 (491)
T 4gc0_A 259 SLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVD 337 (491)
T ss_dssp HHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000001112223334444433333333 333445555666666665 6777777777788888999999999999999
Q ss_pred hhhhcCccchhhHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHhhhhhhcchhhhhhccccc-ccchhHHHHHHH
Q 012902 325 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNT 403 (454)
Q Consensus 325 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 403 (454)
|+|||+....+. ....+++ .....................+...++.....+....+..|..| +.|+++.|+.+.
T Consensus 338 r~Grr~~~~~~~--~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~ 413 (491)
T 4gc0_A 338 KFGRKPLQIIGA--LGMAIGM--FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413 (491)
T ss_dssp HHCSHHHHHHHH--HHHHHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred hhcCcchhccch--HHHHHHH--HHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence 999995433221 0111111 11111111122222222233333333333344455556656555 789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 012902 404 AGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 452 (454)
Q Consensus 404 ~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (454)
.+++++.+++.+.+.+.+. .+....|++.+++.+++.+..+++.+|+|.
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999999999998877553 455667888888888888877777666654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=7.2e-36 Score=291.92 Aligned_cols=366 Identities=13% Similarity=0.071 Sum_probs=259.0
Q ss_pred cCCChhhHHHHHHHHHHHHHHhhhhhhhhhcc-ccchHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHhhcccch
Q 012902 76 FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAM 154 (454)
Q Consensus 76 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~ 154 (454)
+|.|..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++ |++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 8999999999999999999999999 99999999999999999999
Q ss_pred hhhhHHHhhhcCccc--hHHHHHHHHhhHHHHHHhHHhHHHHHhhccCcchhHHHHhHHHHHHHHHHHHhcCCCCCCCC-
Q 012902 155 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP- 231 (454)
Q Consensus 155 ~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~g~~ig~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~- 231 (454)
+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+......++..+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 77888989999999999999999999999999999999887777665555444333221111
Q ss_pred --CC--Chhhhhhhhhc------------------cccC-----------------------CCCCCcchhHhhcCcchH
Q 012902 232 --QL--RPAEKKLIVSS------------------CASK-----------------------EPVKTIPWGLILSKPPVW 266 (454)
Q Consensus 232 --~~--~~~~~~~~~~~------------------~~~~-----------------------~~~~~~~~~~~~~~~~~~ 266 (454)
+. ++++.+..... +..+ .+.+..+.++..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 11 11111110000 0000 000001111112223345
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhCCcccchhhHhHHHHHHHHHHHHHHHHHhhhhhhcCccchhhHHHHHHHHHH
Q 012902 267 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 346 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 346 (454)
...+..++....+.....++|.|.++..+.+..+.+.......+..+++.++.+++.||++||+.... ..+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~----~~~~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP----TKFAVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch----HHHHHHHH
Confidence 55556666666777778889999999888887888999999999999999999999999999865331 11112222
Q ss_pred HHHHHHHHhhc----------cChhHHHHHHHHHHHhhhhhhcchhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 012902 347 GPAFFLTQLSH----------VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 416 (454)
Q Consensus 347 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 416 (454)
........... .+..+......+.+.+.............+..|+++|+++.|+.+...++|..++|.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111 12233333334444444443444444444556668899999999999999999999999
Q ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHhcc
Q 012902 417 GYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 448 (454)
Q Consensus 417 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 448 (454)
+.+.+. ++...|...+++.+++.++.+++.+
T Consensus 443 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 443 TLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp GGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888765 6777888877777777666655543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=3e-33 Score=267.18 Aligned_cols=372 Identities=12% Similarity=0.021 Sum_probs=243.8
Q ss_pred hchhhhhcchh-hhhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHH---hhhhhcccccH
Q 012902 61 GQVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT---ALTPVAAKLGL 136 (454)
Q Consensus 61 ~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~l~~~~~~~~~ 136 (454)
......+.+|. +++++|.|+.+.|++.+.+.++..++++++|+++||+|||+++..+..+.+++. ..+++++ ..
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~ 99 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP--LL 99 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH--HH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 33444555665 667799999999999999999999999999999999999999998887765432 2223332 11
Q ss_pred -HHHHHHHHHHHhhcccchhhhhHHHhhhcCc--cchHHHHHHHHhhHHHHHHhHHhHHHHHhhccCcchhHHHHhHHHH
Q 012902 137 -PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 213 (454)
Q Consensus 137 -~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~g~~ig~~l~~~l~~~~gwr~~f~~~~~~~~ 213 (454)
..+...+.+.|++.+...+.....+.++.++ ++|+...+......++|..++|.+++++.+ .+||+.|++.++..+
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 1234566777776666555555555555543 456777888888889999999999999987 589999998877755
Q ss_pred HHHHHHHHhcCCCCCCCCCCChhhhhhhhhccccCCCCCCcchhHhhcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 012902 214 VWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV 293 (454)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (454)
+..+..+...||++++.++ + +++ ++++++....++++.+|+|+++...+..+.....+..+..++|.|+++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~-~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T 2cfq_A 179 ILAVLLFFAKTDAPSSATV-A--NAV-----GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250 (417)
T ss_dssp THHHHSCSSCCCCSCSSCS-S--SSS-----SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccc-c--ccc-----ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333333333221110 0 000 0001111123456688899988777766666666666677889998775
Q ss_pred hCC---cccchhhHhHHHHHHHHHHHHHHHHHhhhhhhcCccchhhHHHHHHHHHHHHHHHHHHhhccChhHHHH-HHHH
Q 012902 294 LHF---NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMA 369 (454)
Q Consensus 294 ~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 369 (454)
++. +....+.......++.+++.+..++++||+++|+. .. .+..............++.+... ...+
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (417)
T 2cfq_A 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-------LL--LAGTIMSVRIIGSSFATSALEVVILKTL 321 (417)
T ss_dssp SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-------HH--HHHHHHHHHHHHHTTCCSHHHHHHHTTH
T ss_pred HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-------HH--HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 542 24455777777778888999999999999999842 22 22222222222222223333222 2222
Q ss_pred HHHhhhhhhcchhhhhhcccccccchhHHHHH-HHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhcc
Q 012902 370 CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 448 (454)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 448 (454)
.+.+.............+..|++.||++.|.. +...++|+.++|.+.|.+.|..|+...|.+.+++.+++.++.+...+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22222222222233333445667899999994 88889999999999999999888999999888888888776665555
Q ss_pred CCcc
Q 012902 449 GEKV 452 (454)
Q Consensus 449 ~~~~ 452 (454)
++++
T Consensus 402 ~~~~ 405 (417)
T 2cfq_A 402 GPGP 405 (417)
T ss_dssp CSCT
T ss_pred CCCc
Confidence 4443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=8.1e-30 Score=251.11 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=138.2
Q ss_pred hhhcc-hhhhhhcC------CChhhHHHHHHHHHHHHHHhhhhhhhhhccc-cchHHHHHHHHHHHHHHhhhhhcccccH
Q 012902 65 MSIAI-LPMSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALTPVAAKLGL 136 (454)
Q Consensus 65 ~~~~~-~~i~~~~~------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (454)
..+.+ +.+.+++| .+..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++. ++
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~ 109 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SV 109 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CH
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cH
Confidence 33344 44678899 9999999999999999999999999999999 9999999999999999999888752 57
Q ss_pred HHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHH---HHhhHHHHHHhHHhHHHHHhhccCcchhHHHHhHHHH
Q 012902 137 PFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 213 (454)
Q Consensus 137 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~g~~ig~~l~~~l~~~~gwr~~f~~~~~~~~ 213 (454)
+.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..+||.+++.+.+..|||+.|++.+++.+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999876666 9999999999999999999998999999999888877
Q ss_pred HHHHHHHH
Q 012902 214 VWFTVWLS 221 (454)
Q Consensus 214 ~~~~~~~~ 221 (454)
+..+..+.
T Consensus 190 ~~~~~~~~ 197 (524)
T 2xut_A 190 VATVFFWL 197 (524)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 66555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.62 E-value=4e-15 Score=143.13 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=140.4
Q ss_pred Hhhhchhhhhcchhhhhh-cCCChhhHHHHHHHHHHHHHHhhhhhhhhhccc--cchHHHHHHHHHHH-HHHhhhhhccc
Q 012902 58 IVFGQVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS-IATALTPVAAK 133 (454)
Q Consensus 58 ~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~l~~~~~~ 133 (454)
............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (451)
T 1pw4_A 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 343 (451)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 333444455556665555 899999999999999999999999999999999 99999888877766 77777777642
Q ss_pred ccHHHHHHHHHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHH-HHHhHHhHHHHHhhccCcchhHHHHhHHH
Q 012902 134 LGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYSFGSLG 212 (454)
Q Consensus 134 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-g~~ig~~l~~~l~~~~gwr~~f~~~~~~~ 212 (454)
.+.+.+.+..++.|++.+...+....++.|.+|+++|++++|+.+....+ |..++|.+.+.+.+..||+..|++.+++.
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 26778888899999998888888899999999999999999999999999 99999999999999999999999988888
Q ss_pred HHHHHHHHHh
Q 012902 213 TVWFTVWLSK 222 (454)
Q Consensus 213 ~~~~~~~~~~ 222 (454)
++..++.+..
T Consensus 424 ~~~~~~~~~~ 433 (451)
T 1pw4_A 424 ILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776665554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.57 E-value=1.8e-14 Score=137.17 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=126.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHhhcccchhhhhH
Q 012902 80 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN 159 (454)
Q Consensus 80 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 159 (454)
..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.+ +.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888899999999999999999999999999988888888888888 8888888888888887777777889
Q ss_pred HHhhhcCccchHHHHHH-HHhhHHHHHHhHHhHHHHHhhccCcchhHHHHhHHHHHHHHHHHHhcCCCC
Q 012902 160 ILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 227 (454)
Q Consensus 160 ~i~~~~~~~~rg~~~~~-~~~~~~~g~~ig~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 227 (454)
+++|.+|++.|+.+.+. ++....+|..++|.++|.+.++.|++..|.+.+++.++..++.+...||++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999 588889999999999999999889999999988888877666666555543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=1.2e-13 Score=132.21 Aligned_cols=146 Identities=9% Similarity=-0.009 Sum_probs=123.4
Q ss_pred hhhcchhh--hhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHHhhhhhcccccHHHHHHH
Q 012902 65 MSIAILPM--SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVV 142 (454)
Q Consensus 65 ~~~~~~~i--~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 142 (454)
.....|.+ ++.+|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.++..+.+ +.+.++.
T Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 353 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHVGLIA- 353 (438)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHH-
T ss_pred HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcHHHHH-
Confidence 33344444 455699999999999999999999999999999999999999999999999999888888 6665544
Q ss_pred HHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHHhHHHHHhhccC-cchhHHHHhHHHHHH
Q 012902 143 RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVW 215 (454)
Q Consensus 143 r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~~l~~~l~~~~g-wr~~f~~~~~~~~~~ 215 (454)
-++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++.
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 48899999999999999999999855 888888877 556999999999999999999 999999865554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.49 E-value=1.6e-12 Score=126.37 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=130.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----hCCcccchhhHhHHHHHHHHHHHHHHHHHhhh-hhhcCccchhh
Q 012902 263 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV 336 (454)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 336 (454)
+.++......++..+.++....+++.|+++. +|.++.+.+++.+...++..+++++.|+++|| +|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~----- 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA----- 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 4567777788888888999999999999998 89999999999999999999999999999999 899943
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChh-HHHHHHHHHHHhhhhhhcchhhhhhccccccc--chhHHHHHHHHHHHHHHHHH
Q 012902 337 RKIMQSIGFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRY--SGVLLGLSNTAGVLAGVFGT 413 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~ 413 (454)
.. .+.+............++. ......++.+.+.+...........+..++++ |+.+.++.+...++|..++|
T Consensus 88 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 88 --VF--WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp --HH--HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 22 2222222222222233333 34444444455544444444444445556666 78889989999999999999
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHh
Q 012902 414 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 446 (454)
Q Consensus 414 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 446 (454)
.+.+.+.+..||+..|++.++..+++.+...+.
T Consensus 164 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888777776665544
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.45 E-value=2.5e-12 Score=126.15 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=127.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhC------CcccchhhHhHHHHHHHHHHHHHHHHHhhhh-hhcCccch
Q 012902 262 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH------FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVT 334 (454)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~ 334 (454)
+|.++.+.+..++..+.++....++|.|+++.+| .++.+.+++.+...++..++.+..|+++||+ |||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 4677788888888889999999999999998889 9999999999999999999999999999999 98842
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccC-hh-HHHHHHHHHHHhhhhhhcchhhhhhcccccccchhHHHH---HHHHHHHHH
Q 012902 335 TVRKIMQSIGFLGPAFFLTQLSHVD-SP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGL---SNTAGVLAG 409 (454)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~ 409 (454)
.. .+.+............+ +. ......++.+.+.+...........+..++++|+++.+. .+...++|.
T Consensus 88 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 88 ----IL--WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp ----HH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred ----HH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 22 22222222222222222 33 333444444444444444444444555666788766666 889999999
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Q 012902 410 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 445 (454)
Q Consensus 410 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 445 (454)
.++|.+.+.+.+..||+..|++.+++.+++.+...+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887776665543
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.38 E-value=1e-11 Score=120.80 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=127.2
Q ss_pred hhchhhhhcchhhhhhcCCChhhHHHHHHHHHHHHHHhhhhhhhhhccccchHHHHHHHHHHHHHHhhhhhccc--ccHH
Q 012902 60 FGQVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAK--LGLP 137 (454)
Q Consensus 60 ~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~l~~~~~~--~~~~ 137 (454)
..........|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.... .+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 33344445567788888888888888888888999999999999999999999999988888877766543221 0122
Q ss_pred HHHHH--HHHHHhhcccchhhhhHHHhhhcCccchHHHHHHHHhhHHHHHHhHHhHHHHHhh------ccCcchhHHHHh
Q 012902 138 FLLVV--RVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGWPSVFYSFG 209 (454)
Q Consensus 138 ~l~~~--r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~ig~~l~~~l~~------~~gwr~~f~~~~ 209 (454)
..++. -+..+.+ ....+....+.+|.+|.+.|+.++|+......+|..+++.+...+.+ ..++...|++.+
T Consensus 371 ~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 371 VALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 22222 2222333 23456778899999999999999999999999999998887766543 457788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCC
Q 012902 210 SLGTVWFTVWLSKAHSSPAE 229 (454)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~ 229 (454)
.++++..++.+++.||++.+
T Consensus 450 ~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHheecCCCCC
Confidence 99999988888999987543
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=3.5e-12 Score=119.40 Aligned_cols=167 Identities=11% Similarity=-0.006 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhCCcccchhhHhHHHHHHHHHHHHHHHHHhhhhhhcCccchhhHHHHHHHHHH
Q 012902 267 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 346 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 346 (454)
.+.+..++...........+|.+.++ +|.++.+.++..+...++..++.+..|+++||+|||+....+. ....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~ 80 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM--SIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH--HHHHHHHH
Confidence 44555666666777777778876655 8999999999999999999999999999999999998765332 11111111
Q ss_pred HHHHHHHHhhccChhHHH-HHHHHHHHhhhhhhcchhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 012902 347 GPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 425 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 425 (454)
. .. ..++.+.. ....+.+.+.+...........+..++++|+++.++.+....+|..++|.+.+.+.+..+|
T Consensus 81 ~-----~~--~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 81 V-----AV--TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp H-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred H-----HH--HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 1 11 11233333 3333334444433333334444555668999999999999999999999999999988899
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 012902 426 DDVFKVSVGLYLVGTAVW 443 (454)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (454)
+..|++.++..++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888777666533
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=76.78 E-value=47 Score=30.69 Aligned_cols=32 Identities=6% Similarity=-0.115 Sum_probs=16.7
Q ss_pred hhhhhHHHhhhcCccchHHHHHHHHhhHHHHH
Q 012902 154 MPAMNNILSKWVPVAERSRSLALVYSGMYLGS 185 (454)
Q Consensus 154 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~ 185 (454)
..............++|.+.....+....+-.
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 33334445555655666666555555444433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=55.81 E-value=3.6 Score=19.61 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=11.4
Q ss_pred hhhhhhccccchHH
Q 012902 100 AGGIWADTVGGKAV 113 (454)
Q Consensus 100 ~~g~l~dr~Grr~~ 113 (454)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=42.84 E-value=2.2e+02 Score=26.82 Aligned_cols=52 Identities=13% Similarity=-0.002 Sum_probs=27.9
Q ss_pred hcCccch-HHHHHHHHhhHHHHHHhHHh-HHHHHhhccCcchhHHHHhHHHHHH
Q 012902 164 WVPVAER-SRSLALVYSGMYLGSVTGLA-FSPFLIHRFGWPSVFYSFGSLGTVW 215 (454)
Q Consensus 164 ~~~~~~r-g~~~~~~~~~~~~g~~ig~~-l~~~l~~~~gwr~~f~~~~~~~~~~ 215 (454)
-.|+++| .....+.....+....++.. +++.+....+|++.++...+-.++.
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~ 72 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIA 72 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 3566666 45555555555555455544 4444444566777776544444443
No 18
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=31.35 E-value=2.8e+02 Score=24.58 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=13.8
Q ss_pred ccCcchhHHHHhHHHHHHHHHHH
Q 012902 198 RFGWPSVFYSFGSLGTVWFTVWL 220 (454)
Q Consensus 198 ~~gwr~~f~~~~~~~~~~~~~~~ 220 (454)
.+++.|.|++.-+++.+...+.+
T Consensus 243 ~w~~~WVywvgPiiGailaallY 265 (340)
T 3iyz_A 243 NWENHWIYWVGPIIGAVLAGALY 265 (340)
T ss_pred CCCcEeehhHHHHHHHHHHHHHH
Confidence 35567888876666555544443
No 19
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=27.55 E-value=1.2e+02 Score=19.95 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=13.9
Q ss_pred cchhHHHHhHHHHHHHHHHHHhcCCCCCCC
Q 012902 201 WPSVFYSFGSLGTVWFTVWLSKAHSSPAED 230 (454)
Q Consensus 201 wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (454)
|-.++.+...+.++.+-.+-..+||+.++.
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 333333333333444344455677765443
No 20
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.31 E-value=1e+02 Score=17.87 Aligned_cols=6 Identities=0% Similarity=-0.335 Sum_probs=2.3
Q ss_pred HHHhcc
Q 012902 443 WNLFST 448 (454)
Q Consensus 443 ~~~~~~ 448 (454)
++++++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
Done!