Query 012903
Match_columns 453
No_of_seqs 198 out of 396
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14234 DUF4336: Domain of un 100.0 9.8E-83 2.1E-87 629.9 24.0 281 100-393 1-285 (285)
2 PF14597 Lactamase_B_5: Metall 99.5 5.2E-13 1.1E-17 125.6 19.2 196 95-392 1-197 (199)
3 TIGR03413 GSH_gloB hydroxyacyl 98.5 1.3E-05 2.7E-10 78.6 19.2 119 123-259 12-130 (248)
4 PLN02469 hydroxyacylglutathion 98.4 3.1E-05 6.6E-10 76.8 18.4 121 123-259 14-139 (258)
5 PLN02398 hydroxyacylglutathion 98.3 5.9E-05 1.3E-09 77.6 18.4 177 131-407 98-284 (329)
6 PRK10241 hydroxyacylglutathion 98.1 0.00016 3.5E-09 71.1 17.9 111 130-259 21-131 (251)
7 PLN02962 hydroxyacylglutathion 97.8 0.0003 6.5E-09 69.7 12.4 113 130-259 35-154 (251)
8 PRK05452 anaerobic nitric oxid 97.7 0.0018 3.9E-08 69.7 17.6 129 120-259 34-170 (479)
9 PRK11921 metallo-beta-lactamas 97.6 0.0029 6.3E-08 66.1 17.7 126 122-257 34-164 (394)
10 COG0426 FpaA Uncharacterized f 97.6 0.002 4.4E-08 67.7 16.5 128 121-261 36-171 (388)
11 COG0491 GloB Zn-dependent hydr 97.3 0.012 2.7E-07 54.6 16.0 125 131-260 36-172 (252)
12 smart00849 Lactamase_B Metallo 96.3 0.049 1.1E-06 48.4 11.1 135 119-259 4-146 (183)
13 PF00753 Lactamase_B: Metallo- 96.0 0.011 2.5E-07 51.9 5.2 137 120-259 5-149 (194)
14 KOG0813 Glyoxylase [General fu 94.3 0.88 1.9E-05 46.0 13.0 115 131-262 25-146 (265)
15 PRK11539 ComEC family competen 82.2 19 0.00042 41.2 13.3 117 123-256 513-640 (755)
16 TIGR00361 ComEC_Rec2 DNA inter 78.9 21 0.00045 40.3 11.9 68 122-189 451-524 (662)
17 TIGR00649 MG423 conserved hypo 63.3 19 0.00042 38.0 6.8 73 118-190 11-93 (422)
18 PF07521 RMMBL: RNA-metabolisi 48.1 19 0.00041 26.3 2.7 24 350-377 18-41 (43)
19 COG0595 mRNA degradation ribon 47.7 29 0.00062 38.8 5.1 71 118-188 19-99 (555)
20 COG2333 ComEC Predicted hydrol 38.8 3.5E+02 0.0075 27.9 11.0 137 117-257 49-192 (293)
21 PLN02541 uracil phosphoribosyl 28.3 77 0.0017 31.8 4.2 55 132-187 159-217 (244)
22 TIGR00238 KamA family protein. 25.8 1.3E+02 0.0029 31.0 5.6 73 358-445 212-284 (331)
23 PLN02594 phosphatidate cytidyl 24.1 1.1E+02 0.0025 32.2 4.7 73 366-445 266-341 (342)
24 PF05157 T2SE_Nter: Type II se 22.2 2.6E+02 0.0057 22.7 5.8 43 121-163 48-92 (109)
25 KOG1440 CDP-diacylglycerol syn 22.1 1.3E+02 0.0028 32.7 4.7 69 366-443 362-432 (432)
26 TIGR03821 AblA_like_1 lysine-2 20.8 2.2E+02 0.0048 29.3 6.1 74 358-446 195-268 (321)
No 1
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=100.00 E-value=9.8e-83 Score=629.89 Aligned_cols=281 Identities=50% Similarity=0.970 Sum_probs=270.1
Q ss_pred cCcEEEEeeeccccccceecCceEEEEEecCCcEEEEcCCCCCHHHHHHHHHh----cCCeeEEEecCCCcccccChHHH
Q 012903 100 KGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL----AAPVEYIILPTFAYEHKIFVGPF 175 (453)
Q Consensus 100 ~~~IWt~e~~~~~~~~~v~v~~RMTVIRL~dG~L~V~SPvalT~El~~~L~~L----G~~Vk~IV~Pn~~leH~lfl~~~ 175 (453)
+|+||++||+|++ +++.+|+|||||||++|+|||||||++|+||+++|++| | +|+|||+||.++|||+|+++|
T Consensus 1 p~~IW~~eq~~~~--~~v~v~~RMTVVrL~~G~L~VhSPvapT~el~~~l~~L~~~~G-~VkyIVaPn~~lEH~lfl~~w 77 (285)
T PF14234_consen 1 PDQIWTFEQPQGI--FYVPVPTRMTVVRLSDGGLWVHSPVAPTPELKAELDELEAQHG-PVKYIVAPNKGLEHHLFLGPW 77 (285)
T ss_pred CCcEEEEeccccc--cceeecceEEEEEECCCCEEEECCCCCCHHHHHHHHHHhccCC-ceeEEEcCCcchhHHHhHHHH
Confidence 5789999999975 45999999999999999999999999999999999999 6 999999999878999999999
Q ss_pred HHhCCCCeEEeCCCCccCCCCCCcccccccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcc
Q 012903 176 SRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTD 255 (453)
Q Consensus 176 ~~~fP~AkV~a~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtD 255 (453)
+++||+|+||++||+|++|+++|++|.|++.++.|.+++...+|++|||+.+|++.++|++.++|++||||+|||||+||
T Consensus 78 ~~afP~A~v~~~Pg~~s~p~~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTD 157 (285)
T PF14234_consen 78 ARAFPDAKVWAPPGQWSFPLNLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTD 157 (285)
T ss_pred HHHCCCCEEEeCCCcccccccCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhh
Confidence 99999999999999999999999999999998888876778999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccchhhhhHhhhcchhhhhhccCCCCCCCCccCCccccchhHHHHHHHHHhhCCCCCCCCchhHHhhhc
Q 012903 256 AVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQ 335 (453)
Q Consensus 256 ll~nlp~~ppe~~s~~~Ll~~a~~g~~~~ll~~~~~~~~~~~~dt~~~r~~gW~R~~L~~~yf~P~~l~~p~~sF~~l~~ 335 (453)
+++|+|+++|++++.++ ++||+|+|+.+++++.||+++|++||+||+||++||+|+.++.|+.+|++|.+
T Consensus 158 ll~nip~~~p~~~~~d~----------~pll~~ar~~~~~~~~d~~~~r~~GW~r~~Lf~~y~~P~~l~~~~~sf~~~~~ 227 (285)
T PF14234_consen 158 LLFNIPATPPEIFQLDP----------YPLLFHARDRADEPVEDTPENRRKGWQRMVLFALYFRPSALEVPEASFDALSG 227 (285)
T ss_pred chhhCCCCCCcccCCCc----------cchhhcccCCCCCCCCCCHHHHhhhHHHHhHhheeeccccccCchhhHHHHhC
Confidence 99999999999999886 67889999999999999999999999999999999999999999999999999
Q ss_pred cccccceEeeeeeccChHHHHHHHHHHHccCCCCEEEecCCCccccChHHHHHHHHHH
Q 012903 336 KLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAF 393 (453)
Q Consensus 336 ~l~V~Pil~~Lvf~~~~~~~r~wv~~I~~~WdferIIpaHGd~~i~~g~~~fr~aF~~ 393 (453)
|++|+||+++|+|+++++++++|+++|+..|||+||||||+++|+++++++||+||+|
T Consensus 228 ~l~vaPil~~Lv~~r~~~~~~~w~~~v~~~w~f~~iip~H~~api~~~~~~~~~af~f 285 (285)
T PF14234_consen 228 RLFVAPILQTLVFPRAPEEVLAWVDRVASDWDFRRIIPAHFDAPIAATPEEFRAAFSF 285 (285)
T ss_pred CceeCcchhheeccCCcHHHHHHHHHHhhhcCCcEEEecccCCcccCCHHHHHHHhCC
Confidence 9999999999999999999999999999449999999999999999999999999986
No 2
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.54 E-value=5.2e-13 Score=125.56 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=121.6
Q ss_pred EEEeecCcEEEEeeeccccccceecCceEEEEEecCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEecCCCcccccChHH
Q 012903 95 RTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGP 174 (453)
Q Consensus 95 ~revv~~~IWt~e~~~~~~~~~v~v~~RMTVIRL~dG~L~V~SPvalT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~ 174 (453)
|+++...+||.-+. |.- -.++.-.....+-.+|.+ ++.|++++.|..+.|+++| .|+|||+.|. +|-..+..
T Consensus 1 mk~lhrpdl~~Ws~-fn~---~~n~dfng~~~~~p~Gni-lIDP~~ls~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ 72 (199)
T PF14597_consen 1 MKSLHRPDLFSWSW-FNE---ARNLDFNGHAWRRPEGNI-LIDPPPLSAHDWKHLDALG-GVAWIVLTNR--DHVRAAED 72 (199)
T ss_dssp -EE-SSTTEEEEEE-EET---TTTEEEEEEEE--TT--E-EES-----HHHHHHHHHTT---SEEE-SSG--GG-TTHHH
T ss_pred CCcccCCccchhhh-cCh---hhccCceeEEEEcCCCCE-EecCccccHHHHHHHHhcC-CceEEEEeCC--hhHhHHHH
Confidence 34555555876664 210 134455666677756665 7799999999999999999 7999999995 89999999
Q ss_pred HHHhCCCCeEEeCCCCccCCCCCCcccccccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEc
Q 012903 175 FSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVT 254 (453)
Q Consensus 175 ~~~~fP~AkV~a~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvt 254 (453)
+++.| .|+||++++..+. .|+. .++.|.+ .....++|....+. |++...|+++|-.. +|||++
T Consensus 73 ya~~~-~a~i~~p~~d~~~---~p~~-----~D~~l~d---ge~i~~g~~vi~l~----G~ktpGE~ALlled-~vLi~G 135 (199)
T PF14597_consen 73 YAEQT-GAKIYGPAADAAQ---FPLA-----CDRWLAD---GEEIVPGLWVIHLP----GSKTPGELALLLED-RVLITG 135 (199)
T ss_dssp HHHHS---EEEEEGGGCCC----SS-------SEEE-T---T-BSSTTEEEEEE-----SSSSTTEEEEEETT-TEEEES
T ss_pred HHHHh-CCeeeccHHHHhh---CCCC-----Ccccccc---CCCccCceEEEEcC----CCCCCceeEEEecc-ceEEec
Confidence 99999 9999999886642 2221 2233432 23666788888888 77899999998877 599999
Q ss_pred cccccCCCCCCCccchhhhhHhhhcchhhhhhccCCCCCCCCccCCccccchhHHHHHHHHHhhCCCCCCCCchhHHhhh
Q 012903 255 DAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMS 334 (453)
Q Consensus 255 Dll~nlp~~ppe~~s~~~Ll~~a~~g~~~~ll~~~~~~~~~~~~dt~~~r~~gW~R~~L~~~yf~P~~l~~p~~sF~~l~ 334 (453)
|++..-|+..... - |...
T Consensus 136 Dl~~~~~~g~l~l---------------------------------------------------L------pd~k----- 153 (199)
T PF14597_consen 136 DLLRSHPAGSLSL---------------------------------------------------L------PDEK----- 153 (199)
T ss_dssp SSEEBSSTTS-EE-----------------------------------------------------------GGG-----
T ss_pred ceeeecCCCCeEE---------------------------------------------------C------ChHH-----
Confidence 9998754220000 0 1111
Q ss_pred ccccccceEeeeeeccChHHHHHHHHHHHccC-CCCEEEecCCCccccChHHHHHHHHH
Q 012903 335 QKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDW-RFRRIIPAHFAAPINASRSDFLAAFA 392 (453)
Q Consensus 335 ~~l~V~Pil~~Lvf~~~~~~~r~wv~~I~~~W-dferIIpaHGd~~i~~g~~~fr~aF~ 392 (453)
-.++.+++++++|++ .. +||+|.+.||-.+..++++.+++..+
T Consensus 154 --------------~~d~~~a~~sl~RLa-~~~~fe~lLvGdGwpi~~~~r~rl~~L~~ 197 (199)
T PF14597_consen 154 --------------LYDPTEARASLRRLA-AYPDFEWLLVGDGWPIFRDARQRLRELVA 197 (199)
T ss_dssp ---------------S-HHHHHHHHHHHH-T-TT--EEEESBB--B-S-HHHHHHHHHH
T ss_pred --------------cCCHHHHHHHHHHHh-ccccccEEeecCCchhhhhHHHHHHHHHh
Confidence 137899999999999 88 79999999999888899999988754
No 3
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.49 E-value=1.3e-05 Score=78.63 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=83.2
Q ss_pred EEEEEecCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCcccc
Q 012903 123 MTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFF 202 (453)
Q Consensus 123 MTVIRL~dG~L~V~SPvalT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~~ 202 (453)
|-+|+-.+|..+|+.|-. ...+.+.|+++|.+|++|++.+.-..|...+..++++|| ++||++++..-...
T Consensus 12 ~yli~~~~~~~ilID~g~-~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~~~~~~------- 82 (248)
T TIGR03413 12 IWLLHDPDGQAAVVDPGE-AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEERIPGI------- 82 (248)
T ss_pred EEEEEcCCCCEEEEcCCC-hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEecccccCCCC-------
Confidence 344554445667777653 467888999998789999999976689999999999998 99999876411000
Q ss_pred cccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccccc
Q 012903 203 GIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIF 259 (453)
Q Consensus 203 gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~n 259 (453)
+..+.+ .....+ +++++.++..+ +|....++++....+.|+.+|+++.
T Consensus 83 ----~~~v~~-g~~~~~-g~~~i~v~~tp---GHT~g~i~~~~~~~~~lftGDtl~~ 130 (248)
T TIGR03413 83 ----THPVKD-GDTVTL-GGLEFEVLAVP---GHTLGHIAYYLPDSPALFCGDTLFS 130 (248)
T ss_pred ----cEEeCC-CCEEEE-CCEEEEEEECC---CCCcccEEEEECCCCEEEEcCcccc
Confidence 112211 111122 34566666644 5888899999998899999999975
No 4
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.36 E-value=3.1e-05 Score=76.76 Aligned_cols=121 Identities=11% Similarity=0.162 Sum_probs=83.5
Q ss_pred EEEEEecC-CcEEEEcCCCCCHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCccc
Q 012903 123 MTVIKLKS-GGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAF 201 (453)
Q Consensus 123 MTVIRL~d-G~L~V~SPvalT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~ 201 (453)
+-+|.-.+ +..+|+.|.. .+.+.+.|+++|.+|++|++.+.-..|...+..++++||+|+||+.........
T Consensus 14 ~Yli~d~~~~~~vlIDp~~-~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~~~------ 86 (258)
T PLN02469 14 AYLIIDESTKDAAVVDPVD-PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVKGC------ 86 (258)
T ss_pred EEEEEeCCCCeEEEECCCC-hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCCCC------
Confidence 44555433 4677788874 467788899998889999999986689999999999999999999754211110
Q ss_pred ccccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECC----CCeEEEcccccc
Q 012903 202 FGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKP----SRTLLVTDAVIF 259 (453)
Q Consensus 202 ~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~----SrTLIvtDll~n 259 (453)
+..+.+ .....+.+++.+.++..+ +|....+++|... .+.|+.+|++|.
T Consensus 87 -----~~~v~~-gd~i~lg~~~~~~vi~tP---GHT~ghi~~~~~~~~~~~~~lFtGDtLf~ 139 (258)
T PLN02469 87 -----THPVEN-GDKLSLGKDVNILALHTP---CHTKGHISYYVTGKEGEDPAVFTGDTLFI 139 (258)
T ss_pred -----CeEeCC-CCEEEECCceEEEEEECC---CCCCCCEEEEeccCCCCCCEEEecCcccC
Confidence 112221 122233344556666655 6889999998753 358999999975
No 5
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.26 E-value=5.9e-05 Score=77.60 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=119.7
Q ss_pred CcEEEEcCCCCCHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCcccccccccCcc
Q 012903 131 GGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTL 210 (453)
Q Consensus 131 G~L~V~SPvalT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~~gi~~~~~L 210 (453)
|..+|..|-. .+.+.+.|++.|.++++|++.|.-..|...+..++++| +|+||+++..... .+ ++ +..+
T Consensus 98 ~~~~vVDP~~-a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~---i~----~~--d~~v 166 (329)
T PLN02398 98 GTVGVVDPSE-AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDR---IP----GI--DIVL 166 (329)
T ss_pred CEEEEEcCCC-HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhh---cc----CC--cEEe
Confidence 4556677754 56788889998888999999998668999999999999 6999998763321 10 00 1122
Q ss_pred CCCCCCCCcc-CCeEEEEccCCCCCCCCceEEEEEECCCCeEEEccccccCCCCCCCccchhhhhHhhhcchhhhhhccC
Q 012903 211 IDEDLSTPWA-DEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKG 289 (453)
Q Consensus 211 ~~~~~~~pw~-de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~nlp~~ppe~~s~~~Ll~~a~~g~~~~ll~~~ 289 (453)
.+ ...|. ++.++.++..+ +|....+++|....+.|+.+|++++-..
T Consensus 167 ~d---Gd~i~lgg~~l~vi~tP---GHT~GhI~~~~~~~~vLFtGDtLf~~g~--------------------------- 213 (329)
T PLN02398 167 KD---GDKWMFAGHEVLVMETP---GHTRGHISFYFPGSGAIFTGDTLFSLSC--------------------------- 213 (329)
T ss_pred CC---CCEEEECCeEEEEEeCC---CcCCCCEEEEECCCCEEEECCCcCCCCc---------------------------
Confidence 21 11221 34556666654 6899999999988899999999976210
Q ss_pred CCCCCCCccCCccccchhHHHHHHHHHhhCCCCCCCCchhHHhhhccccccceEeeeeeccChHHHHHHHHHHHccCCCC
Q 012903 290 KEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDRIVCDWRFR 369 (453)
Q Consensus 290 ~~~~~~~~~dt~~~r~~gW~R~~L~~~yf~P~~l~~p~~sF~~l~~~l~V~Pil~~Lvf~~~~~~~r~wv~~I~~~Wdfe 369 (453)
| | +|..+.++..+++++|. +.+.+
T Consensus 214 -----------------G--r------------------------------------~feg~~~~~~~SL~rL~-~L~~~ 237 (329)
T PLN02398 214 -----------------G--K------------------------------------LFEGTPEQMLSSLQKII-SLPDD 237 (329)
T ss_pred -----------------C--C------------------------------------CCCCCHHHHHHHHHHHH-cCCCC
Confidence 0 0 01224567778899998 78876
Q ss_pred E-EEecCCCccc--------cChHHHHHHHHHHHhhhhccccccCCc
Q 012903 370 R-IIPAHFAAPI--------NASRSDFLAAFAFLDDLLGERYVTRPS 407 (453)
Q Consensus 370 r-IIpaHGd~~i--------~~g~~~fr~aF~~L~~~~~~~~~~~~~ 407 (453)
. |+|+||.... +-..+.+++..++..+...+..++.|+
T Consensus 238 t~VypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t~Ps 284 (329)
T PLN02398 238 TNIYCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPT 284 (329)
T ss_pred eEEECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCcCCc
Confidence 5 7799996432 223456777777777665556666665
No 6
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.14 E-value=0.00016 Score=71.07 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCcccccccccCc
Q 012903 130 SGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKT 209 (453)
Q Consensus 130 dG~L~V~SPvalT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~~gi~~~~~ 209 (453)
+|..+|+.|-. .+.+++.|+++|..+++|++.+.-..|...+..++++||+++||++........ +..
T Consensus 21 ~~~~ilIDpg~-~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~~~~-----------~~~ 88 (251)
T PRK10241 21 AGRCLIVDPGE-AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGT-----------TQV 88 (251)
T ss_pred CCcEEEECCCC-hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccccCC-----------ceE
Confidence 45566666653 577899999998788999999875678899999999999999999765322111 111
Q ss_pred cCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccccc
Q 012903 210 LIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIF 259 (453)
Q Consensus 210 L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~n 259 (453)
+.+ .....+ ++.++.++..+ +|....+++|.. +.|+.+|+++.
T Consensus 89 v~~-g~~i~i-g~~~~~vi~tP---GHT~ghi~~~~~--~~lFtGDtlf~ 131 (251)
T PRK10241 89 VKD-GETAFV-LGHEFSVFATP---GHTLGHICYFSK--PYLFCGDTLFS 131 (251)
T ss_pred eCC-CCEEEe-CCcEEEEEEcC---CCCccceeeecC--CcEEEcCeecc
Confidence 211 111122 24456666655 588888888863 68999999975
No 7
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.77 E-value=0.0003 Score=69.71 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=79.9
Q ss_pred CCcEEEEcCCC-CCHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCcccccccccC
Q 012903 130 SGGLWVHAPIA-PTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAK 208 (453)
Q Consensus 130 dG~L~V~SPva-lT~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~~gi~~~~ 208 (453)
++.-+|+.|.. -.+.+++.|++.|.+|++|+..+.=..|...+..++++||+|++++.+..... . +.
T Consensus 35 ~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~~~---~---------d~ 102 (251)
T PLN02962 35 DKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASGSK---A---------DL 102 (251)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccCCC---C---------CE
Confidence 45667788864 34667889999988899999999856899999999999999999986532110 0 11
Q ss_pred ccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEEC------CCCeEEEcccccc
Q 012903 209 TLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHK------PSRTLLVTDAVIF 259 (453)
Q Consensus 209 ~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk------~SrTLIvtDll~n 259 (453)
.+.+ .....+ +++++.++..+ +|....++|+.. ..+.|+++|+||.
T Consensus 103 ~l~~-g~~i~~-g~~~l~vi~tP---GHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~ 154 (251)
T PLN02962 103 FVEP-GDKIYF-GDLYLEVRATP---GHTAGCVTYVTGEGPDQPQPRMAFTGDALLI 154 (251)
T ss_pred EeCC-CCEEEE-CCEEEEEEECC---CCCcCcEEEEeccCCCCCccceEEECCeecc
Confidence 1221 111122 45666777755 688999999865 3579999999975
No 8
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.68 E-value=0.0018 Score=69.68 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=83.2
Q ss_pred CceEEEEEecCCcEEEEcCCC--CCHHHHHHHHHh-c-CCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccC--
Q 012903 120 NIRMTVIKLKSGGLWVHAPIA--PTKECIQLVKEL-A-APVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-- 193 (453)
Q Consensus 120 ~~RMTVIRL~dG~L~V~SPva--lT~El~~~L~~L-G-~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~-- 193 (453)
..+.-+|+- + .-+|+.|.. ..++.++.|.+. + .+|+|||+.|.-..|-..++.+.++||+|+||+++.....
T Consensus 34 t~NsYLI~~-~-~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~ 111 (479)
T PRK05452 34 SYNSYLIRE-E-KNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDSIN 111 (479)
T ss_pred EEEEEEEEC-C-CEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHH
Confidence 346778873 3 445555543 356777777643 2 1799999988767899999999999999999998764311
Q ss_pred -CCC-CCcccccccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccccc
Q 012903 194 -PLN-LPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIF 259 (453)
Q Consensus 194 -p~~-lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~n 259 (453)
..+ .+..+ ..+.+ .....+.+.....++..+ |.|....+++|...+++|+.+|++=.
T Consensus 112 ~~~~~~~~~~------~~v~~-G~~l~lG~~~~l~~i~tP--~~H~pgs~~~y~~~~~vLFsgD~fG~ 170 (479)
T PRK05452 112 GHHHHPEWNF------NVVKT-GDTLDIGNGKQLIFVETP--MLHWPDSMMTYLTGDAVLFSNDAFGQ 170 (479)
T ss_pred HhhcCCcCeE------EEeCC-CCEEecCCCcEEEEEECC--CCCCCCceEEEEcCCCEEEecccccC
Confidence 000 01111 11221 122234433444455544 56888999999999999999999743
No 9
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.63 E-value=0.0029 Score=66.06 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=80.0
Q ss_pred eEEEEEecCCcEEEEcCC--CCCHHHHHHHHHh-cC-CeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccC-CCC
Q 012903 122 RMTVIKLKSGGLWVHAPI--APTKECIQLVKEL-AA-PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-PLN 196 (453)
Q Consensus 122 RMTVIRL~dG~L~V~SPv--alT~El~~~L~~L-G~-~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~-p~~ 196 (453)
++-+|+ +++.+|+.+. ...+++.+.|++. +. +++|||+.|.-..|...++.+.+++|+++||+++..... ...
T Consensus 34 NsyLI~--~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~ 111 (394)
T PRK11921 34 NSYLIK--DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGH 111 (394)
T ss_pred EEEEEe--CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHH
Confidence 456665 3444555554 3356777777654 31 699999988767899999999999999999998764311 000
Q ss_pred CCcccccccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccc
Q 012903 197 LPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAV 257 (453)
Q Consensus 197 lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll 257 (453)
....|. ...+.+ .....+ ++.....+..+ |.|....+++|.+..++|+.+|++
T Consensus 112 ~~~~~~----~~~v~~-g~~l~l-G~~~l~~i~tP--~~H~p~~~~~y~~~~~vLFsgD~f 164 (394)
T PRK11921 112 YHQDWN----FVVVKT-GDRLEI-GSNELIFIEAP--MLHWPDSMFTYLTGDNILFSNDAF 164 (394)
T ss_pred hCCCCc----eEEeCC-CCEEee-CCeEEEEEeCC--CCCCCCceEEEEcCCCEEEecCcc
Confidence 000010 011211 111112 34556666555 568889999999999999999985
No 10
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.63 E-value=0.002 Score=67.68 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=84.9
Q ss_pred ceEEEEEecCCcEEEEcCCC--CCHHHHHHHHHhcC--CeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccC-C-
Q 012903 121 IRMTVIKLKSGGLWVHAPIA--PTKECIQLVKELAA--PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW-P- 194 (453)
Q Consensus 121 ~RMTVIRL~dG~L~V~SPva--lT~El~~~L~~LG~--~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~-p- 194 (453)
.+.=+|+ ++...++.|.- .+++.++.|+.+-. ++.|||+-|....|-.-++.|.+.+|+|+++++.-...+ +
T Consensus 36 yNSYLI~--~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~ 113 (388)
T COG0426 36 YNSYLIV--GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKG 113 (388)
T ss_pred eeeEEEe--CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHH
Confidence 3455677 67777777773 45666777877752 599999999988999999999999999999998421111 0
Q ss_pred -CCCCcccccccccCccCCCCCCCCcc-CCeEEEEccCCCCCCCCceEEEEEECCCCeEEEccccccCC
Q 012903 195 -LNLPLAFFGIFRAKTLIDEDLSTPWA-DEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVP 261 (453)
Q Consensus 195 -~~lpl~~~gi~~~~~L~~~~~~~pw~-de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~nlp 261 (453)
...+. +.-+ .++.....+. .++++..-+ -.|.......|.+.++.|+.+|+.-...
T Consensus 114 ~~~~~~-~~~i------vk~Gd~ldlGg~tL~Fi~ap----~LHWPd~m~TYd~~~kILFS~D~fG~h~ 171 (388)
T COG0426 114 FYHDPE-WFKI------VKTGDTLDLGGHTLKFIPAP----FLHWPDTMFTYDPEDKILFSCDAFGAHV 171 (388)
T ss_pred hcCCcc-ceee------cCCCCEeccCCcEEEEEeCC----CCCCCCceeEeecCCcEEEccccccccc
Confidence 00000 0000 0111122233 445544444 5678889999999999999999986554
No 11
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.32 E-value=0.012 Score=54.60 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=76.2
Q ss_pred CcEEEEcCCCC--CHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCCCccccc-----
Q 012903 131 GGLWVHAPIAP--TKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFG----- 203 (453)
Q Consensus 131 G~L~V~SPval--T~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~lpl~~~g----- 203 (453)
+.++|.+.... ...+.+.+.++|.+|++||+.+.-..|-..+..+++.++.|+++..+............+.+
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 45555555555 36678889999877999999998678999999999999888984444322110000000000
Q ss_pred ccc-----cCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEccccccC
Q 012903 204 IFR-----AKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFV 260 (453)
Q Consensus 204 i~~-----~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~nl 260 (453)
... ...+.+ .....+. +....++.. .+|....++++.+..+.|+++|+++.-
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~t---pGHT~g~~~~~~~~~~~l~~gD~~~~~ 172 (252)
T COG0491 116 YAAPGASPLRALED-GDELDLG-GLELEVLHT---PGHTPGHIVFLLEDGGVLFTGDTLFAG 172 (252)
T ss_pred CCCCccccceecCC-CCEEEec-CeEEEEEEC---CCCCCCeEEEEECCccEEEecceeccC
Confidence 000 000100 0111121 223334443 379999999999999999999999763
No 12
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=96.35 E-value=0.049 Score=48.37 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=82.4
Q ss_pred cCceEEEEEecCCcEEEEcCCCCCHHHHHHHHHhcC-CeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCCC
Q 012903 119 TNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAA-PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNL 197 (453)
Q Consensus 119 v~~RMTVIRL~dG~L~V~SPvalT~El~~~L~~LG~-~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~l 197 (453)
....+.+|+-.++.+++.++......+.+.|+++|. +|++||+.+.-..|...+..+.++ +++++|+++.....-...
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~~~~ 82 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELLKDL 82 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHHhcc
Confidence 356788999965556555554545566667888864 899999999867888888888887 899999887655321000
Q ss_pred ------Cccccccccc-CccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccccc
Q 012903 198 ------PLAFFGIFRA-KTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIF 259 (453)
Q Consensus 198 ------pl~~~gi~~~-~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~n 259 (453)
+..+...... ..+.. .....+. +.++.++..+ .|....++++-+..+.|+.+|+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~---~h~~~~~~~~~~~~~vl~~gD~~~~ 146 (183)
T smart00849 83 LKLGGALGAEAPPPPPDRTLKD-GEELDLG-GLELEVIHTP---GHTPGSIVLYLPEGKILFTGDLLFS 146 (183)
T ss_pred chhccccCcCCCCCccceecCC-CCEEEeC-CceEEEEECC---CCCCCcEEEEECCCCEEEECCeeec
Confidence 0000000000 11111 1112222 3455555422 3566667777777889999999854
No 13
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=96.01 E-value=0.011 Score=51.86 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=78.0
Q ss_pred CceEEEEEecCCcEEEEcCCCCCHHHHHH---HHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCCC
Q 012903 120 NIRMTVIKLKSGGLWVHAPIAPTKECIQL---VKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLN 196 (453)
Q Consensus 120 ~~RMTVIRL~dG~L~V~SPvalT~El~~~---L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~~ 196 (453)
++.+.+|+-.++.++|..+.......... ...-+.+|++||+.+.-..|...+..+.++++.+.+............
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRP 84 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccccc
Confidence 57789999855555555555444444432 222233899999999867899999999999988877665432210000
Q ss_pred CCccccc-----ccccCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECCCCeEEEcccccc
Q 012903 197 LPLAFFG-----IFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIF 259 (453)
Q Consensus 197 lpl~~~g-----i~~~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~SrTLIvtDll~n 259 (453)
....... ..........................+. .+....+.++-...+.|+.+|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vlftGD~~~~ 149 (194)
T PF00753_consen 85 PDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGP---GHGSDSLIIYLPGGKVLFTGDLLFS 149 (194)
T ss_dssp HHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESS---SSSTTEEEEEETTTTEEEEETTSCT
T ss_pred cccccccccccccccccceeeecccccccccccccceecc---ccCCcceEEEeCCCcEEEeeeEecc
Confidence 0000000 0000000000111222333444444423 5667788888899999999999976
No 14
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=94.26 E-value=0.88 Score=46.01 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=80.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHh---cCCeeEEEecCCCcccccChHHHHHhCC-CCeEEeCCCCccCCCCCCcccccccc
Q 012903 131 GGLWVHAPIAPTKECIQLVKEL---AAPVEYIILPTFAYEHKIFVGPFSRKFP-RAQIWVAPRQWSWPLNLPLAFFGIFR 206 (453)
Q Consensus 131 G~L~V~SPvalT~El~~~L~~L---G~~Vk~IV~Pn~~leH~lfl~~~~~~fP-~AkV~a~pg~~s~p~~lpl~~~gi~~ 206 (453)
+..++..|.-| +.+...++++ +..+.+|+..++=..|-....++++.+| ++++++....+..- +
T Consensus 25 ~~a~~vDP~~p-e~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r~~~------i----- 92 (265)
T KOG0813|consen 25 IDADLVDPAEP-EYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDRIPG------I----- 92 (265)
T ss_pred eeeeeecCcch-HHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhcCcc------c-----
Confidence 44667777653 4445555553 3379999999986788899999999977 99999885111110 1
Q ss_pred cCccCCCCCCCCccCCeEEEEccCCCCCCCCceEEEEEECC---CCeEEEccccccCCC
Q 012903 207 AKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKP---SRTLLVTDAVIFVPR 262 (453)
Q Consensus 207 ~~~L~~~~~~~pw~de~e~~~l~~~~~G~~~~~EvvffHk~---SrTLIvtDll~nlp~ 262 (453)
++.+.+ ....-|. +.+...+..+ .|.-..+++|+.. .++|+.+|+|++.++
T Consensus 93 ~~~~~~-~e~~~~~-g~~v~~l~TP---gHT~~hi~~~~~~~~~e~~iFtGDtlf~~Gc 146 (265)
T KOG0813|consen 93 TRGLKD-GETVTVG-GLEVRCLHTP---GHTAGHICYYVTESTGERAIFTGDTLFGAGC 146 (265)
T ss_pred cccCCC-CcEEEEC-CEEEEEEeCC---CccCCcEEEEeecCCCCCeEEeCCceeecCc
Confidence 111211 1222344 7888899988 7899999999997 899999999999754
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=82.25 E-value=19 Score=41.21 Aligned_cols=117 Identities=18% Similarity=0.127 Sum_probs=72.8
Q ss_pred EEEEEecCCcEEEEcCCCC-------CHHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccCCC
Q 012903 123 MTVIKLKSGGLWVHAPIAP-------TKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPL 195 (453)
Q Consensus 123 MTVIRL~dG~L~V~SPval-------T~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~p~ 195 (453)
.++|+- +|.-+++++=.- ...+...|++.|-++.+||+.|...+|...+....++||..++|.+.+....
T Consensus 513 a~li~~-~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~~~-- 589 (755)
T PRK11539 513 AVVIER-NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWANH-- 589 (755)
T ss_pred EEEEEE-CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCcccCc--
Confidence 456665 555555554321 1345668899887899999999988999999999999999999986432110
Q ss_pred CCCcccccccccCccCCCCCCCCccCCeEEEEccCCCCC--CCCceEEEEE--ECCCCeEEEccc
Q 012903 196 NLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVG--IGPYVEVAFY--HKPSRTLLVTDA 256 (453)
Q Consensus 196 ~lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~~G--~~~~~Evvff--Hk~SrTLIvtDl 256 (453)
.+ ... ...-.| +++++.++.|..-. .....-+++. ....+.|+.+|+
T Consensus 590 -~~-----------~~~-g~~~~~-~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi 640 (755)
T PRK11539 590 -LP-----------CVR-GEQWQW-QGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL 640 (755)
T ss_pred -cc-----------ccC-CCeEeE-CCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC
Confidence 00 000 111123 46777787665211 1123345554 445668888885
No 16
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=78.89 E-value=21 Score=40.27 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=51.9
Q ss_pred eEEEEEecCCcEEEEcCCCCC------HHHHHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeCCC
Q 012903 122 RMTVIKLKSGGLWVHAPIAPT------KECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPR 189 (453)
Q Consensus 122 RMTVIRL~dG~L~V~SPvalT------~El~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg 189 (453)
-+++|+..+..+++...-... ..+...|++.|.++.+||+.|...+|...+....++||-.++|.+.+
T Consensus 451 daili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~ 524 (662)
T TIGR00361 451 LAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKG 524 (662)
T ss_pred eEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccc
Confidence 467777754444444443221 33677899999779999999987899999999999999999998766
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=63.27 E-value=19 Score=37.98 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=55.1
Q ss_pred ecCceEEEEEecCCcEEEEcCCCCCHHH----------HHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeC
Q 012903 118 STNIRMTVIKLKSGGLWVHAPIAPTKEC----------IQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVA 187 (453)
Q Consensus 118 ~v~~RMTVIRL~dG~L~V~SPvalT~El----------~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~ 187 (453)
.++..|++|+..+..++|.+.....++. .+.|.+-...|++|++.|.-..|...++.+.+.++.+.||++
T Consensus 11 eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~ 90 (422)
T TIGR00649 11 EIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGT 90 (422)
T ss_pred ccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeC
Confidence 5789999999866667788777654321 233444334799999999767899999999999987899999
Q ss_pred CCC
Q 012903 188 PRQ 190 (453)
Q Consensus 188 pg~ 190 (453)
+..
T Consensus 91 ~~t 93 (422)
T TIGR00649 91 PLT 93 (422)
T ss_pred HHH
Confidence 764
No 18
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=48.12 E-value=19 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.0
Q ss_pred cChHHHHHHHHHHHccCCCCEEEecCCC
Q 012903 350 KVPEKVRDWIDRIVCDWRFRRIIPAHFA 377 (453)
Q Consensus 350 ~~~~~~r~wv~~I~~~WdferIIpaHGd 377 (453)
.|+++.++|++.+. +++||+.||+
T Consensus 18 ad~~~L~~~i~~~~----p~~vilVHGe 41 (43)
T PF07521_consen 18 ADREELLEFIEQLN----PRKVILVHGE 41 (43)
T ss_dssp -BHHHHHHHHHHHC----SSEEEEESSE
T ss_pred CCHHHHHHHHHhcC----CCEEEEecCC
Confidence 46789999999874 4999999996
No 19
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=47.69 E-value=29 Score=38.80 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=53.4
Q ss_pred ecCceEEEEEecCCcEEEEcCCCCCHHHH---HH-------HHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeC
Q 012903 118 STNIRMTVIKLKSGGLWVHAPIAPTKECI---QL-------VKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVA 187 (453)
Q Consensus 118 ~v~~RMTVIRL~dG~L~V~SPvalT~El~---~~-------L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~ 187 (453)
.+|-.|+++.+.++-++++..+.+.++-. +. |.+--.+|++|++.|.-.+|-..++-+..+++.+.||++
T Consensus 19 EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~piy~s 98 (555)
T COG0595 19 EIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPIYAS 98 (555)
T ss_pred hhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCceecC
Confidence 56889999999888888888887775510 00 111111799999999756888889999999999999988
Q ss_pred C
Q 012903 188 P 188 (453)
Q Consensus 188 p 188 (453)
|
T Consensus 99 ~ 99 (555)
T COG0595 99 P 99 (555)
T ss_pred H
Confidence 6
No 20
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=38.83 E-value=3.5e+02 Score=27.91 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=78.0
Q ss_pred eecCce-EEEEEecCCcEEEEcCC-CCCHHHHHHHHHhcC-CeeEEEecCCCcccccChHHHHHhCCCCeEEeCCCCccC
Q 012903 117 VSTNIR-MTVIKLKSGGLWVHAPI-APTKECIQLVKELAA-PVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSW 193 (453)
Q Consensus 117 v~v~~R-MTVIRL~dG~L~V~SPv-alT~El~~~L~~LG~-~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~pg~~s~ 193 (453)
+++|.. -++|+-+++.+.+...- .-+..++--|+++|- .+.++|+.|...+|-..+....+.|+==++|+..+..+.
T Consensus 49 lDvGqg~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~ 128 (293)
T COG2333 49 LDVGQGLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDST 128 (293)
T ss_pred EEcCCCeEEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCcc
Confidence 666766 56677755555444443 356667889999996 588999999878999999999995444444444443321
Q ss_pred CCCCCcccccccccCccCCCCCCCCccCCeEEEEccCCC-CCCCC-ceEEEEE--ECCCCeEEEcccc
Q 012903 194 PLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPE-VGIGP-YVEVAFY--HKPSRTLLVTDAV 257 (453)
Q Consensus 194 p~~lpl~~~gi~~~~~L~~~~~~~pw~de~e~~~l~~~~-~G~~~-~~Evvff--Hk~SrTLIvtDll 257 (453)
.... +.-.++..... .....-+| +.+.+.++.|.. .+... ..-+++. -...+.|+.+|+=
T Consensus 129 ~~~~-~~~~~~~~~~~--~~G~~~~~-~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e 192 (293)
T COG2333 129 STFV-LRDAGIPVRSC--KAGDSWQW-GGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLE 192 (293)
T ss_pred chhh-hhhcCCceecc--ccCceEEE-CCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCC
Confidence 1000 00000000000 00122334 467888888762 33333 3444444 3456678888864
No 21
>PLN02541 uracil phosphoribosyltransferase
Probab=28.32 E-value=77 Score=31.77 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCHHH----HHHHHHhcCCeeEEEecCCCcccccChHHHHHhCCCCeEEeC
Q 012903 132 GLWVHAPIAPTKEC----IQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVA 187 (453)
Q Consensus 132 ~L~V~SPvalT~El----~~~L~~LG~~Vk~IV~Pn~~leH~lfl~~~~~~fP~AkV~a~ 187 (453)
.++|..|+=-|... .+.|.+.|.+++.|++-+. +-=.-.+....++||+.++|++
T Consensus 159 ~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~-ias~~Gl~~i~~~fP~v~I~ta 217 (244)
T PLN02541 159 RVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCA-VAAPPALKKLSEKFPGLHVYAG 217 (244)
T ss_pred EEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEE-EECHHHHHHHHHHCcCCEEEEE
Confidence 69999999777665 3455556765556666665 2344567889999999999987
No 22
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.77 E-value=1.3e+02 Score=31.01 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=48.1
Q ss_pred HHHHHHccCCCCEEEecCCCccccChHHHHHHHHHHHhhhhccccccCCcchhhhhhhccCCCCCCCcchHHHHHHHHHH
Q 012903 358 WIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEF 437 (453)
Q Consensus 358 wv~~I~~~WdferIIpaHGd~~i~~g~~~fr~aF~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 437 (453)
.++.+. +-....++..|.+-+.+ -.++.++|++.|.+. +...+++...-++. .+|.+.|.+|-+.
T Consensus 212 l~~~L~-~~~~~~~~vsh~nh~~E-i~~~~~~ai~~L~~a---------Gi~v~~qtvLl~gv----nD~~~~l~~L~~~ 276 (331)
T TIGR00238 212 LCELLA-SFELQLMLVTHINHCNE-ITEEFAEAMKKLRTV---------NVTLLNQSVLLRGV----NDRAQILAKLSIA 276 (331)
T ss_pred HHHHHH-hcCCcEEEEccCCChHh-CCHHHHHHHHHHHHc---------CCEEEeecceECCc----CCCHHHHHHHHHH
Confidence 333333 45678999999887633 346788888888765 22223333333333 3577788888889
Q ss_pred hHHccccc
Q 012903 438 LVSVGAVK 445 (453)
Q Consensus 438 l~~~g~~~ 445 (453)
|.+.||.|
T Consensus 277 l~~~gV~p 284 (331)
T TIGR00238 277 LFKVGIIP 284 (331)
T ss_pred HhhcCeec
Confidence 99999976
No 23
>PLN02594 phosphatidate cytidylyltransferase
Probab=24.09 E-value=1.1e+02 Score=32.21 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCCEEEecCCCccccChHHHHHHHHHHHhh--hhccccccCCcchhhhhhhccCCCCCC-CcchHHHHHHHHHHhHHcc
Q 012903 366 WRFRRIIPAHFAAPINASRSDFLAAFAFLDD--LLGERYVTRPSLSLLFTSLMGKAASYF-PPDDMKTLSSLDEFLVSVG 442 (453)
Q Consensus 366 WdferIIpaHGd~~i~~g~~~fr~aF~~L~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~l~~~g 442 (453)
=||-.+||-||+...+-...-+-.-|.++.- .. ....++...+. ......+ ++|.+++++.|.+.|.+.|
T Consensus 266 KDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi---~~~~~~~~~il----~~i~~~l~~~~q~~l~~~l~~~l~~~g 338 (342)
T PLN02594 266 KDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFI---VPQSVSVGKLL----DQILTLLTDEEQKELYVKLGQMLQERG 338 (342)
T ss_pred CcccCccCCCccccccccHHHHHHHHHHHHHHHHh---cCCCCCHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999888788888888886422 21 01122322222 2221223 4458999999999999998
Q ss_pred ccc
Q 012903 443 AVK 445 (453)
Q Consensus 443 ~~~ 445 (453)
+-.
T Consensus 339 ~~~ 341 (342)
T PLN02594 339 LGL 341 (342)
T ss_pred CCC
Confidence 743
No 24
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=22.15 E-value=2.6e+02 Score=22.74 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=30.2
Q ss_pred ceEEEEEecCCcEEEEcCCCCCHHHHHHHHHh-cC-CeeEEEecC
Q 012903 121 IRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL-AA-PVEYIILPT 163 (453)
Q Consensus 121 ~RMTVIRL~dG~L~V~SPvalT~El~~~L~~L-G~-~Vk~IV~Pn 163 (453)
-|+..++..+|.+.|...=|.+.+..+.|+.+ |. +|+.++++.
T Consensus 48 ~~~lPl~~~~~~l~va~~dP~~~~~~~~l~~~~~~~~i~~~la~~ 92 (109)
T PF05157_consen 48 NRVLPLRQDDGTLVVAVADPLDPEALDELEFLLGKYPIEFVLATR 92 (109)
T ss_dssp HTEEEEEECTTCEEEEES-TT-HHHHHHHHHHH-S--EEEEE--H
T ss_pred cCEEEEEEECCEEEEEEcCCCCHHHHHHHHHHcCCCCeEEEEeCH
Confidence 46777888889999988888899999999988 54 688666654
No 25
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=22.12 E-value=1.3e+02 Score=32.71 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=50.1
Q ss_pred CCCCEEEecCCCccccChHHHHHHHHHHH--hhhhccccccCCcchhhhhhhccCCCCCCCcchHHHHHHHHHHhHHccc
Q 012903 366 WRFRRIIPAHFAAPINASRSDFLAAFAFL--DDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEFLVSVGA 443 (453)
Q Consensus 366 WdferIIpaHGd~~i~~g~~~fr~aF~~L--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~l~~~g~ 443 (453)
=||--.||-||+.-..-..+.+-.+|.+. .... ..|+.|.++.-+.- . -|+|.++....|.+.|.+.|+
T Consensus 362 KDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~SFI-----~~~~~s~ll~qi~~--l--~~~qq~~l~~~L~~~l~~~~~ 432 (432)
T KOG1440|consen 362 KDFGDSIPGHGGITDRMDCQILMATFAYVYIQSFI-----RLPGVSKLLDQILT--L--TPEQQLNLFEKLQRRLSSKGK 432 (432)
T ss_pred CcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHh--C--CHHHHHHHHHHHHHHHHhhcC
Confidence 47999999999988887899999999954 4332 12334444544443 2 377799999999999988764
No 26
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=20.79 E-value=2.2e+02 Score=29.31 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=46.7
Q ss_pred HHHHHHccCCCCEEEecCCCccccChHHHHHHHHHHHhhhhccccccCCcchhhhhhhccCCCCCCCcchHHHHHHHHHH
Q 012903 358 WIDRIVCDWRFRRIIPAHFAAPINASRSDFLAAFAFLDDLLGERYVTRPSLSLLFTSLMGKAASYFPPDDMKTLSSLDEF 437 (453)
Q Consensus 358 wv~~I~~~WdferIIpaHGd~~i~~g~~~fr~aF~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 437 (453)
-++.+. .-..+.++..|.|-+. .-.+++++|.+.|.+. +.....+...-++ -.+|.+.|.+|-+.
T Consensus 195 l~~~L~-~~~~~~~~~~h~dh~~-Ei~d~~~~ai~~L~~~---------Gi~v~~qtvllkg----iNDn~~~l~~L~~~ 259 (321)
T TIGR03821 195 LCDLLA-NSRLQTVLVVHINHAN-EIDAEVADALAKLRNA---------GITLLNQSVLLRG----VNDNADTLAALSER 259 (321)
T ss_pred HHHHHH-hcCCcEEEEeeCCChH-hCcHHHHHHHHHHHHc---------CCEEEecceeeCC----CCCCHHHHHHHHHH
Confidence 334343 4467788888998874 3346688888877765 1111112212111 13578889999999
Q ss_pred hHHcccccC
Q 012903 438 LVSVGAVKK 446 (453)
Q Consensus 438 l~~~g~~~~ 446 (453)
|.+.||.|=
T Consensus 260 l~~~gv~py 268 (321)
T TIGR03821 260 LFDAGVLPY 268 (321)
T ss_pred HHHcCCeeC
Confidence 999999774
Done!