BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012907
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q36|A Chain A, Crystal Structure Of The 4fe-4s Cluster Domain Of Human
Dna Primase Large Subunit
pdb|3Q36|B Chain B, Crystal Structure Of The 4fe-4s Cluster Domain Of Human
Dna Primase Large Subunit
Length = 192
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 131/187 (70%), Gaps = 3/187 (1%)
Query: 262 GEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWK 321
G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +E AL FWK
Sbjct: 4 GKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWK 63
Query: 322 AEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGDHHGCPYRH 379
EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII S+ P GD+HGCP+RH
Sbjct: 64 QEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRH 123
Query: 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAGINHPNQYF 438
E L+ L + + ++D V+ HYQ+AC FE +H+ C +NHPNQ+F
Sbjct: 124 SDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFF 183
Query: 439 SDSHKIL 445
+S +IL
Sbjct: 184 CESQRIL 190
>pdb|3L9Q|A Chain A, Crystal Structure Of Human Polymerase Alpha-Primase P58
Iron-Sulfur Cluster Domain
pdb|3L9Q|B Chain B, Crystal Structure Of Human Polymerase Alpha-Primase P58
Iron-Sulfur Cluster Domain
Length = 195
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 128/184 (69%), Gaps = 3/184 (1%)
Query: 265 SIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEF 324
S+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +E AL FWK EF
Sbjct: 3 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEF 62
Query: 325 SQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGDHHGCPYRHFSE 382
+ K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII S+ P GD+HGCP+RH
Sbjct: 63 IKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDP 122
Query: 383 ENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAGINHPNQYFSDS 441
E L+ L + + ++D V+ HYQ+AC FE +H+ C +NHPNQ+F +S
Sbjct: 123 ELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVDDCGFSLNHPNQFFCES 182
Query: 442 HKIL 445
+IL
Sbjct: 183 QRIL 186
>pdb|3LGB|A Chain A, Crystal Structure Of The Fe-S Domain Of The Yeast Dna
Primase
pdb|3LGB|B Chain B, Crystal Structure Of The Fe-S Domain Of The Yeast Dna
Primase
Length = 194
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 108/178 (60%), Gaps = 9/178 (5%)
Query: 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFD 334
S++PLC+++L + L+++HHL++ GR QL LFLKG+GL ++AL FW F+ E+F+
Sbjct: 16 SNYPLCIKNLXEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTNXT-XEKFN 74
Query: 335 KEYAYSIRHNYGKEGKRTDYTPYSCQKIISST-PGVGDHHGCPYRHFSEENLRAALGRMG 393
KEY YS RHNYG EG R +Y P+ C I+S PG GD+HGCP+R +S E L A L
Sbjct: 75 KEYRYSFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSXK 134
Query: 394 VGSRAMEDVVDKVRNRHYQLACTLTFEAVHSSSC-------DAGINHPNQYFSDSHKI 444
+ + V+D + Y +ACT FE H+S+ I HPN YF S ++
Sbjct: 135 LTQAQIISVLDSCQKGEYTIACTKVFEXTHNSASADLEIGEQTHIAHPNLYFERSRQL 192
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWK 73
S L + R L ++ D D R L ++D + G P+EM ++++ LWK
Sbjct: 50 SILAIVRAMTTLNIQYGDSA--RQDDARKLMHMADTIEEGTMPKEMSDIIQRLWK 102
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWK 73
S L + R L ++ D D R L ++D + G P+EM ++++ LWK
Sbjct: 51 SILAIVRAMTTLNIQYGDSA--RQDDARKLMHMADTIEEGTMPKEMSDIIQRLWK 103
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWK 73
S L + R L ++ D D R L ++D + G P+EM ++++ LWK
Sbjct: 82 SILAIVRAMTTLNIQYGDSA--RQDDARKLMHMADTIEEGTMPKEMSDIIQRLWK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,279,101
Number of Sequences: 62578
Number of extensions: 539617
Number of successful extensions: 1239
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 8
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)