BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012907
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WJ2|PRI2_ARATH Probable DNA primase large subunit OS=Arabidopsis thaliana
GN=At1g67320 PE=2 SV=2
Length = 454
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/452 (70%), Positives = 381/452 (84%)
Query: 1 MEIVRSQRSRTNTPNDSVSTLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKR 60
ME++RSQ+ + S TLPLY AP +EVRLE+FE+FA+DRLRVLKG+SD LAR +
Sbjct: 1 MEVIRSQKRTVSNDVVSTPTLPLYLTAPHMEVRLEEFELFAIDRLRVLKGVSDGLARARN 60
Query: 61 PEEMENLVRDLWKANMRHPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYR 120
P EM++LV LWK +MR SE +NKDIISHFVLRLVYCR+++L+KWFLSMETAL+R+R
Sbjct: 61 PNEMDDLVETLWKEHMRLSNVSEMINKDIISHFVLRLVYCRSDELKKWFLSMETALFRHR 120
Query: 121 FLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEE 180
F L E +RA++ EF LP KA+ E E+ KE+L VARS Q + I+YKVPFEE
Sbjct: 121 FRLKKIEEQRAIVGEFGLPYKAVIGAELESLKERLGLVARSHGQISSDVENIYYKVPFEE 180
Query: 181 VPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLT 240
VP+LVA RRV + KG A+VA Q+VSLVVTQFRS+LSKALILTNRKWT+TIRE+E+DRLT
Sbjct: 181 VPDLVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWTTTIREREKDRLT 240
Query: 241 PIVEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRM 300
PIVEALS SYLGPDYSQ+ E+ +IS+KD+DQ+++SSFPLCMRHLF+KLREDHHLKHGGRM
Sbjct: 241 PIVEALSTSYLGPDYSQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHLKHGGRM 300
Query: 301 QLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQ 360
QLGLFLKGVGL+++DALAFW+ EF++KVG+ERFDKEYAY+IRHNYGKEGKRTDYTPY+C
Sbjct: 301 QLGLFLKGVGLKLDDALAFWREEFTKKVGSERFDKEYAYAIRHNYGKEGKRTDYTPYACS 360
Query: 361 KIISSTPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFE 420
KII+S PG GDHHGCPYRHFSE+NL+AAL RMG+ SR MEDV+DKVRNRHYQLACTLTFE
Sbjct: 361 KIITSAPGAGDHHGCPYRHFSEDNLKAALSRMGLSSRGMEDVMDKVRNRHYQLACTLTFE 420
Query: 421 AVHSSSCDAGINHPNQYFSDSHKILQPKNNNA 452
AV+ +SCD GINHPNQYF +S KIL+ K A
Sbjct: 421 AVYGTSCDTGINHPNQYFEESQKILKSKTPAA 452
>sp|P33610|PRI2_MOUSE DNA primase large subunit OS=Mus musculus GN=Prim2 PE=1 SV=1
Length = 505
Score = 345 bits (885), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 181/435 (41%), Positives = 270/435 (62%), Gaps = 13/435 (2%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A DR+++LK I + ++ K E+ ++ L ++ K
Sbjct: 25 SLQFYLQPPTENISLTEFENLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S ++++ YKVPF + +L GR+VY+
Sbjct: 145 KDSHLHFEAISDEEKTLREQDIMASSPSLSGIKLESESV-YKVPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLNHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQKNTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII ++ PG GD
Sbjct: 321 EQALQFWKQEFIRGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPGQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
+HGCP+RH E L+ + + + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 YHGCPFRHSDAELLKQKMQSYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
+NHPNQ+F +S +IL
Sbjct: 441 LNHPNQFFFESQRIL 455
>sp|O89044|PRI2_RAT DNA primase large subunit OS=Rattus norvegicus GN=Prim2 PE=2 SV=1
Length = 507
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 180/435 (41%), Positives = 268/435 (61%), Gaps = 13/435 (2%)
Query: 20 TLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMR 77
+L Y P + L +FE A DR+++LK I + ++ K E+ ++ L ++ K
Sbjct: 25 SLQFYLQPPTENISLTEFESLAFDRVKLLKAIENLGVSYVKGTEQYQSKLEAEIRKLKFS 84
Query: 78 HPEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+ E ED +D ISHF+LRL YC++EDLR+WF+ E L R+RF + + ++ +
Sbjct: 85 YRENLEDEYEPRRRDHISHFILRLAYCQSEDLRRWFIQQEMDLLRFRFSILPKDKVQSFL 144
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIH 193
++ L +AIS E ++ + + S ++++ YKVPF + +L GR+VY+
Sbjct: 145 KDTHLHFEAISDEEKTLREQDIMASSPSLSGVRWESESV-YKVPFADALDLFRGRKVYLE 203
Query: 194 KGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYLGP 253
G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS SY G
Sbjct: 204 DGFAYVPLKDIVAIILNEFRATLSKALALTARSLPAV---QSDERLQPLLSHLSHSYTGQ 260
Query: 254 DYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
DYS K G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG+GL +
Sbjct: 261 DYSTQKSTGKISLDQIDSLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTL 320
Query: 314 EDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGD 371
E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII ++ P GD
Sbjct: 321 EQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCMKIILTNPPSQGD 380
Query: 372 HHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-SSCDAG 430
HGCP+RH E L+ + + + + ++D V+ HYQ+AC FE H+ C
Sbjct: 381 FHGCPFRHSDAELLKQKMQTYKIPASGISQILDLVKGNHYQVACQKYFEMTHNVDDCGFS 440
Query: 431 INHPNQYFSDSHKIL 445
+NHPNQ+F +S +IL
Sbjct: 441 LNHPNQFFFESQRIL 455
>sp|P49643|PRI2_HUMAN DNA primase large subunit OS=Homo sapiens GN=PRIM2 PE=1 SV=2
Length = 509
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/440 (41%), Positives = 269/440 (61%), Gaps = 25/440 (5%)
Query: 21 LPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISD-ALARGKRPEEMEN-LVRDLWKANMRH 78
L Y P + L +FE A+DR+++LK + + ++ K E+ ++ L +L K +
Sbjct: 26 LQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSY 85
Query: 79 PEASEDV----NKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALME 134
E ED +D ISHF+LRL YC++E+LR+WF+ E L R+RF + + + ++
Sbjct: 86 RENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLK 145
Query: 135 EFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI------FYKVPFEEVPELVAGR 188
+ L +AIS E + +E+ E VA S P+ + YK+PF + +L GR
Sbjct: 146 DSQLQFEAISDEE-KTLREQ-EIVASS-----PSLSGLKLGFESIYKIPFADALDLFRGR 198
Query: 189 RVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSM 248
+VY+ G AYV + +V++++ +FR+ LSKAL LT R + Q +RL P++ LS
Sbjct: 199 KVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV---QSDERLQPLLNHLSH 255
Query: 249 SYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKG 308
SY G DYS G+IS+ +D L+ SFP CMR L LRE+HHL+HGGRMQ GLFLKG
Sbjct: 256 SYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKG 315
Query: 309 VGLRMEDALAFWKAEFSQ-KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKII-SST 366
+GL +E AL FWK EF + K+ ++FDK Y+Y+IRH++GKEGKRTDYTP+SC KII S+
Sbjct: 316 IGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRTDYTPFSCLKIILSNP 375
Query: 367 PGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS-S 425
P GD+HGCP+RH E L+ L + + ++D V+ HYQ+AC FE +H+
Sbjct: 376 PSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMIHNVD 435
Query: 426 SCDAGINHPNQYFSDSHKIL 445
C +NHPNQ+F +S +IL
Sbjct: 436 DCGFSLNHPNQFFCESQRIL 455
>sp|O74761|PRI2_SCHPO DNA primase large subunit OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pri2 PE=1 SV=1
Length = 459
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 267/465 (57%), Gaps = 41/465 (8%)
Query: 3 IVRSQRSRTNTPNDSVST-----------LPLYRYAPQLEVRLEDFEVFAMDRLRVLKGI 51
+ R+ +SR N + S+ L Y+ P E+ +E+FE +A+DRL VL I
Sbjct: 1 MFRTTKSRVVEKNQNFSSASFESLSYPTRLNFYKKPPVSEISIEEFETWAIDRLVVLGEI 60
Query: 52 SDALARGKRPEEMENLVRDLWKANMRHPEAS------------EDVNKDIISHFVLRLVY 99
A+ R K E+ +++ + + R P +S E+ KD SHF+LRL +
Sbjct: 61 ESAMLRNKTKNELNGIIKKIL--DKRLPMSSNMARTVKGNSLDEERRKDHYSHFILRLAF 118
Query: 100 CRTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVA 159
R+++LR FL E+ L+R+RF+ + ++A ++ D +++S+ E + EKL+ +
Sbjct: 119 SRSDELRIRFLRAESTLFRFRFVNEETRERQAFIDSLDFQWESVSQEEKDVFYEKLQASS 178
Query: 160 RSFDQPLPTADAIFYKVPFEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKA 219
+ + F+KVPF +VP+LV R V++HKG+AYV + VSLVV +F NL KA
Sbjct: 179 QR-----NIENESFFKVPFFKVPDLVERRAVFVHKGYAYVPFSEQVSLVVEEFEENLKKA 233
Query: 220 LILTNRKWTSTIREQERDRLTPIVEALSMSYLGPDYSQTK-EFGEISIKDLDQLARSSFP 278
L T + S R E DRL PI+ LS ++ P+ S + G I+ +D S FP
Sbjct: 234 LESTAK---SLPRLDEDDRLLPILNHLSKGFVAPESSIVAPKSGAITAGQVDSFV-SHFP 289
Query: 279 LCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYA 338
LC +HL + L+ D HL+H GR+Q GLFLK +GL +++AL FW+ F+ V ++F+KEY
Sbjct: 290 LCAKHLHEVLKRDKHLRHFGRLQYGLFLKDIGLSVDEALVFWRKSFTN-VTEDKFNKEYR 348
Query: 339 YSIRHNYGKEGKRTDYTPYSCQKIISSTP-GVGDHHGCPYRHFSEENLRAALGRMGVG-- 395
Y+IRH YG EG R +Y Y+CQ+I++ G GD HGCPYR +S NL +AL MG+
Sbjct: 349 YNIRHTYGLEGNRKNYKGYNCQQILTGPQLGPGDAHGCPYRTYSVNNLVSALASMGIAPD 408
Query: 396 SRAMEDVVDKVRNRHYQLACTLTFEAVHSS--SCDAGINHPNQYF 438
S +VV+ V+ RHY +ACT FE H + S + I+HP QYF
Sbjct: 409 SAGCREVVEAVKARHYHIACTRVFELTHPNVGSLEESIHHPLQYF 453
>sp|Q9VPH2|PRI2_DROME DNA primase large subunit OS=Drosophila melanogaster
GN=DNApol-alpha60 PE=1 SV=2
Length = 533
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 266/452 (58%), Gaps = 28/452 (6%)
Query: 23 LYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKR--PEEMENLVR-DLWKANMR-- 77
LY Y P +V +++FE A++RLR+L+ + A R R +E + +V DL + +R
Sbjct: 30 LYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSY 89
Query: 78 -----------HPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSS 126
H + +D +SHF+LRL YCR+EDL +WF++ E L+RY+F SS
Sbjct: 90 LRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSS 149
Query: 127 EAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI-FYKVPFEEVPELV 185
+ +E ++ + + K+ L + + Q + + + FYKVPF +V +LV
Sbjct: 150 FEVKQFLEANGFEIHPLTEAQKDEVKDGLYE--STVGQSVAKIELLDFYKVPFTQVLDLV 207
Query: 186 AGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERD-RLTPIVE 244
GRR ++ G+AYV H +VSLV T+ + + + L + + + + E D R++ ++
Sbjct: 208 RGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGL----QAAKTMVEDVEADERISRTLK 263
Query: 245 ALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGL 304
AL SY G DY+ ++ + I+ LDQL+++S PLCMR + +R +HH+KH GRMQ GL
Sbjct: 264 ALHNSYTGRDYTVCRD-AAVPIESLDQLSKTSMPLCMRMCHEHIRANHHIKHSGRMQYGL 322
Query: 305 FLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKIIS 364
FLKG+G+ +ED+L FW+ EF++K+ A++F + Y Y+I HNYGK+G +YTPYSC KII
Sbjct: 323 FLKGIGVALEDSLRFWREEFTKKMDADKFTRSYEYNIYHNYGKKGSMVNYTPYSCAKIIK 382
Query: 365 STPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHS 424
G GD HGCPY++ + +L+ L G+ + A+++V+ V HYQ+ C F+ H+
Sbjct: 383 DVAGPGDCHGCPYKNMDQGSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHN 442
Query: 425 SSCDAGINHPNQYFSDSHKIL---QPKNNNAA 453
S + INHPN YF +S + Q + N +A
Sbjct: 443 SPVEPSINHPNNYFEESQIAMGNRQKRANGSA 474
>sp|P20457|PRI2_YEAST DNA primase large subunit OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRI2 PE=1 SV=1
Length = 528
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 168/454 (37%), Positives = 255/454 (56%), Gaps = 34/454 (7%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWKANMR- 77
S L Y PQ E+ LE FE++A+DRL++L I L+R K +E+E +++ ++ +
Sbjct: 57 SKLSFYDLPPQGEITLEQFEIWAIDRLKILLEIESCLSRNKSIKEIETIIKPQFQKLLPF 116
Query: 78 HPEASEDVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFD 137
+ E+ ED KD SHF+LRL +CR+++LR+ F+ ET L++ RF + +S + ++ D
Sbjct: 117 NTESLEDRKKDYYSHFILRLCFCRSKELREKFVRAETFLFKIRFNMLTSTDQTKFVQSLD 176
Query: 138 LPC-KAISRTEFENAKEKLEQ-VARSFDQPLPTADA----------IFYKVPFEEVPELV 185
LP + IS E +L Q V+ S L + F K+PFE V ELV
Sbjct: 177 LPLLQFISNEEKAELSHQLYQTVSASLQFQLNLNEEHQRKQYFQQEKFIKLPFENVIELV 236
Query: 186 AGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEA 245
R V++ G+AY+ Q ++L+ +F S L++ LI T + R E DRL PI+
Sbjct: 237 GNRLVFLKDGYAYLPQFQQLNLLSNEFASKLNQELIKT---YQYLPRLNEDDRLLPILNH 293
Query: 246 LSMSYLGPDYSQTK--EFGEISIKDLDQLA------RSSFPLCMRHLFDKLREDHHLKHG 297
LS Y D++Q K +F E +++ + S++PLC+++L + L+++HHL++
Sbjct: 294 LSSGYTIADFNQQKANQFSENVDDEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYY 353
Query: 298 GRMQLGLFLKGVGLRMEDALAFWKAEFSQ--KVGAERFDKEYAYSIRHNYGKEGKRTDYT 355
GR QL LFLKG+GL ++AL FW F++ + E+F+KEY YS RHNYG EG R +Y
Sbjct: 354 GRQQLSLFLKGIGLSADEALKFWSEAFTRNGNMTMEKFNKEYRYSFRHNYGLEGNRINYK 413
Query: 356 PYSCQKIISST-PGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLA 414
P+ C I+S PG GD+HGCP+R +S E L A L M + + V+D + Y +A
Sbjct: 414 PWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIA 473
Query: 415 CTLTFEAVHSSSC-------DAGINHPNQYFSDS 441
CT FE H+S+ I HPN YF S
Sbjct: 474 CTKVFEMTHNSASADLEIGEQTHIAHPNLYFERS 507
>sp|Q8NIZ4|PRI2_NEUCR Probable DNA primase large subunit OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=5F3.150 PE=3 SV=1
Length = 513
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 240/465 (51%), Gaps = 48/465 (10%)
Query: 21 LPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEE----MENLVRDLWKANM 76
L Y P ++ +E FE +A+DRLR+L + R K P E M+ L+ +
Sbjct: 38 LNFYSTPPTADITIEQFEQWAIDRLRILAELEACSFRNKTPAETASHMKPLLDKYLPLDT 97
Query: 77 RHPEASE---DVNKDIISHFVLRLVYCRTEDLRKWFLSMETALYRYRFLLGSSEAKRALM 133
+S+ KD SHF+LRL + TEDLR+ F +ET L+R R + A +
Sbjct: 98 NSSSSSQLFAQRQKDHYSHFILRLAFASTEDLRRRFTRVETMLFRMRLNADDGRERAAFI 157
Query: 134 EEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADA---------IFYKVPFEEVPEL 184
+L + +S E + SF + KV + VPEL
Sbjct: 158 NSLNLDWETVSDEE-KRELAAELAATASFGGYKKGQQQQQQYEEDQQTWCKVSWLRVPEL 216
Query: 185 VAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVE 244
V RRV++ +G+AYV + ++VV++F S L + L LT R + R E DRLTPI+
Sbjct: 217 VEQRRVFLRQGYAYVPAREQQAMVVSEFSSRLERQLELTAR---ALPRLDEDDRLTPILA 273
Query: 245 ALSMSYLGPDYS-----QTKEFGEISIKDLDQLARSS-FPLCMRHLFDKLREDHHLKHGG 298
LS +++ PD S +IS +++D L + FP CM HL LR D HLKH G
Sbjct: 274 HLSKNFITPDASYVGTSSAISSADISARNIDTLVNNHHFPACMSHLHRTLRRDAHLKHYG 333
Query: 299 RMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTD----- 353
R+Q LFLKG+GL +E+ L FW+ F+ K+ + F+KEY Y++RH YG G ++
Sbjct: 334 RLQYTLFLKGIGLNLEECLLFWRQSFN-KITDDTFNKEYRYNVRHTYGDVGGDSNRRGGG 392
Query: 354 YTPYSCQKIISS-TPGVGDHHGCPYRHFSEENLRAALGR-MGVGSRAMEDVVDKVRNRH- 410
Y+PYSCQKI++ PG G+ HGCPYRHF+ ENL+ L + MGV R + + V + + +
Sbjct: 393 YSPYSCQKILTEHPPGPGEAHGCPYRHFNMENLQTLLQQGMGVTDRGVLNGVKEDKEKQK 452
Query: 411 YQLACTLTFEAVHSSSC----DAGIN---------HPNQYFSDSH 442
+ +AC FE +H D GI HPN+YF S+
Sbjct: 453 FHMACNRVFEHLHKEELKKAKDEGIMTAAQLETIVHPNEYFKRSY 497
>sp|O02334|PRI2_CAEEL DNA primase large subunit OS=Caenorhabditis elegans GN=pri-2 PE=2
SV=2
Length = 503
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 248/474 (52%), Gaps = 41/474 (8%)
Query: 5 RSQRSRTNTPNDSVSTLP-----------LYRYAPQLEVRLEDFEVFAMDRLRVLK---G 50
R+ R++ ++ S+ T P LY+ P ++ L +F+ AM+RL++LK
Sbjct: 14 RNVRTKISSNRQSIKTAPTKAAEIPEYLQLYQTPPGDDISLTEFDDIAMERLKLLKSFEN 73
Query: 51 ISDALARGKRPEEMENLVRDLWKANM------RHPEASEDV----NKDIISHFVLRLVYC 100
+ D+++ +E ++ R L + P E+V +D I HF+LRL +C
Sbjct: 74 LKDSVSLYN--DEFKDKFRKLCDGTKLIVFPDQKPPHQEEVYELWRRDNIGHFILRLAFC 131
Query: 101 RTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVAR 160
RT + +KW +E R+R + + + + + + TE + E LE +
Sbjct: 132 RTPENQKWLTQIEGDFLRFRLRQEREQVLDSALANVNFTIEKLGYTEKQAMIEDLEAACQ 191
Query: 161 S--FDQPLPTADAIFYKVPFEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSK 218
F+ P T FYKV F + EL+ V++ KG AY +V+++VT+ ++N+
Sbjct: 192 FNLFEAPNKT----FYKVDFIDAIELIRRGSVHLKKGFAYFPFDDLVTILVTKMKNNMMA 247
Query: 219 ALILTNRKWTSTIREQERDRLTPIVEALSMSYLGPDYSQTKEFGEISIKD--LDQLARSS 276
A+ + + I E+E L + + +Y G DY+ + G I + +D+L+R S
Sbjct: 248 AMARSFKHLA--ILEEEGRLLPRLSLLSNNAYSGKDYNGEQPDGSIIVTRHMIDKLSRRS 305
Query: 277 FPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKE 336
F CM+ + + LR +HHLK+G R Q GLFLKG+GL +++A+A + EF++K+ +++FDKE
Sbjct: 306 FAPCMKQMHNHLRVNHHLKYGARRQYGLFLKGIGLSLDEAIAMMRDEFTKKITSDKFDKE 365
Query: 337 YAYSIRHNYGKEGKRTDYTPYSCQKII-SSTPGVGDHHGCPYRHFSEENLRAALGRMGVG 395
Y Y+IR+ YGKEG+R T SC II + P D HGCP+RH ++ L+ LG +
Sbjct: 366 YGYNIRYMYGKEGRRVAQTAMSCATIILRNPPSAVDCHGCPFRHSEKQVLKQKLGSDAIL 425
Query: 396 SR-AMEDVVDKVRNRHYQLACTLTFEAVHS---SSCDAGINHPNQYFSDSHKIL 445
+ +E + + Y ACT FE +H+ I HPNQ++ +S KI+
Sbjct: 426 KKEQIERIAELAELNQYDKACTRYFEFMHNLEEGGLGQLITHPNQFYEESQKIV 479
>sp|Q55BM5|PRI2_DICDI DNA primase large subunit OS=Dictyostelium discoideum GN=prim2 PE=3
SV=1
Length = 470
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 237/457 (51%), Gaps = 24/457 (5%)
Query: 5 RSQRSRTNTPNDSVSTLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGIS---DALARGKRP 61
+ S+T+T ND+ S L Y P + E + +DR +L +S D L+ K
Sbjct: 6 KKTNSQTSTSNDACSLL--YINVPDFNCNMSQIENYCIDRFNLLNEVSKLKDTLSAQKSN 63
Query: 62 EEMENLVRDLWKANMRHPEASEDVN---KDIISHFVLRLVYCRTEDLRKWFLSMETALYR 118
+N D + R +++D KD +SH+ LRL C + D R WF++ E+ L
Sbjct: 64 TSKDN--EDFRNLSSRFLGSTKDEQFKIKDELSHYCLRLAMCDSTD-RNWFITTESILLA 120
Query: 119 YRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQPLPTADAI-FYKVP 177
R L S+ + +S+ E+E ++ L + + + L + FYK+P
Sbjct: 121 NR--LNQSDLTTIISSFKGFGWSPVSQEEYEQYQDDLGYLVKKANLNLNEVNNTHFYKLP 178
Query: 178 FEEVPELVAGRRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERD 237
F+++P+L+ ++ I KG AY+ + +V+ F++ ++ AL K T ++E
Sbjct: 179 FQDIPKLIDTKKAIIIKGEAYIYISNFKDMVIHTFKNYMNFAL--DRIKADKTRIKEEFP 236
Query: 238 RLTPIVEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHG 297
L L + G + Q I +D+ L+++SFP+CMR ++D L E LK+
Sbjct: 237 ELIQFFTTLPKAGDGTNKPQLGNTKHIRKEDVSPLSKTSFPMCMRVMYDSLVETSSLKYE 296
Query: 298 GRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTDYTPY 357
GR+Q G FLKG+GL ++A+ FW+ FS++V FDKEY Y+IRHNYG EGK T+Y+PY
Sbjct: 297 GRLQFGTFLKGIGLPYDEAINFWRIAFSKRVSNTDFDKEYLYNIRHNYGLEGKSTNYSPY 356
Query: 358 SCQKIISSTPGVGDH--HGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLAC 415
SC +IIS +P GD HGCPY S E L L +G+ +++ + +AC
Sbjct: 357 SCPRIISKSPHNGDKLVHGCPYIQ-SLERLEQKLLDLGIDDFQRIQILEATKTSP-NVAC 414
Query: 416 TLTFEAVH-SSSCDAGINHPNQYFSDS---HKILQPK 448
T F +H +++ INHPNQ++ S +K L+ K
Sbjct: 415 TKHFNFLHPNNTLTKLINHPNQFYDQSMEYYKTLEEK 451
>sp|O29911|PRIL_ARCFU Probable DNA primase large subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=priB PE=3 SV=1
Length = 370
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 240 TPIVEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGR 299
P+ EA+S + +E + ++ DL ++ + P CMR + +L+ ++ H R
Sbjct: 229 VPVSEAVSEAVRELSRKAKRESEKFAM-DLGEVDLNCLPPCMREILSELQRGMNIPHTAR 287
Query: 300 MQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYS 358
+ FL +G+ +++ +A +K+ A FD E Y + H G+ GK +YT S
Sbjct: 288 FAITSFLLNIGMTVDEIIALFKS-------APDFDDEKTRYQVEHIAGERGKGAEYTSPS 340
Query: 359 CQKIISSTPGVGD 371
C + + + V D
Sbjct: 341 CDTMRTYSNCVAD 353
>sp|Q9HN47|PRIL_HALSA Probable DNA primase large subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=priB PE=3
SV=1
Length = 360
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 222 LTNRKWTSTIREQERDRLT-----PIVEALSMSYLGPDYSQTKEFGEISI-KDLDQLARS 275
+T+ + + IRE R+R+ + + ++ + P + ++ + +++D +
Sbjct: 173 VTDAELDTLIREAIRERVADGLPLSVPDQIADALDEPVAAIQDALADLDLTREIDTVVPE 232
Query: 276 SFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDK 335
FP CM+HL D+++ HL H R + FL VGL ++ + + E + G E
Sbjct: 233 LFPPCMKHLLDQVQRGDHLPHHARFAITSFLSNVGLSTDEIVDIY--EVNPGFGEEM--- 287
Query: 336 EYAYSIRHNYGKEGKRTDYTPYSCQKI 362
Y H G + T+YT SC +
Sbjct: 288 -TRYQTDHIQG-DSSPTEYTAPSCATM 312
>sp|B0R7F5|PRIL_HALS3 Probable DNA primase large subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=priB PE=3 SV=1
Length = 360
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 222 LTNRKWTSTIREQERDRLT-----PIVEALSMSYLGPDYSQTKEFGEISI-KDLDQLARS 275
+T+ + + IRE R+R+ + + ++ + P + ++ + +++D +
Sbjct: 173 VTDAELDTLIREAIRERVADGLPLSVPDQIADALDEPVAAIQDALADLDLTREIDTVVPE 232
Query: 276 SFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDK 335
FP CM+HL D+++ HL H R + FL VGL ++ + + E + G E
Sbjct: 233 LFPPCMKHLLDQVQRGDHLPHHARFAITSFLSNVGLSTDEIVDIY--EVNPGFGEEM--- 287
Query: 336 EYAYSIRHNYGKEGKRTDYTPYSCQKI 362
Y H G + T+YT SC +
Sbjct: 288 -TRYQTDHIQG-DSSPTEYTAPSCATM 312
>sp|Q5UYQ8|PRIL_HALMA Probable DNA primase large subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=priB PE=3 SV=1
Length = 358
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 267 KDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQ 326
+++D + FP CM+ L D++++ HL+H R + FL G+G+ ++ + ++
Sbjct: 221 REIDTVVPELFPPCMKSLLDQVQKGEHLEHHSRFAIATFLVGIGMTTDEIVDLFQVNPGF 280
Query: 327 KVGAERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKIIS 364
A R Y + H G + T+Y+ +C + S
Sbjct: 281 GEEATR------YQVDHIRG-DTSPTEYSTPACSTMQS 311
>sp|Q0W2J3|PRIL_UNCMA Probable DNA primase large subunit OS=Uncultured methanogenic
archaeon RC-I GN=priB PE=3 SV=1
Length = 366
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 271 QLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGA 330
++ + SFP CM++L L++ +L H R L FL +GL + + ++ A
Sbjct: 218 EVTQDSFPPCMKNLLADLQKGINLPHTARFALTSFLANIGLDKDAIMDLYRM-------A 270
Query: 331 ERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDHHGCPY 377
F ++ Y ++H G G T+YT C+ +++ +G + C Y
Sbjct: 271 PDFREDLTHYQVQHITGGSG--TEYTCPGCKTMMTYGNCIGKNKLCEY 316
>sp|Q8TVJ5|PRIL_METKA Probable DNA primase large subunit OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=priB PE=3
SV=1
Length = 406
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 266 IKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFS 325
++ +++ A FP C+R L + +E +L H R L FL VG ++ + FS
Sbjct: 288 LERVEKGAGGRFPPCIRELLRRAQEGENLPHEARFALAAFLVNVGWDVDRVVEV----FS 343
Query: 326 QKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKI 362
FD+E Y +RH G+ G T Y P +C K+
Sbjct: 344 N---LPDFDEERTQYQVRHIAGEVGGGTRYLPPNCDKM 378
>sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=priB
PE=3 SV=1
Length = 371
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 211 QFRSNLSKALILTNRKWTSTIREQERDRL-----TPIVEALSMSYLGPDYSQTKEFGEIS 265
QFR+ K +T ++ + E R+R+ P + ++ P ++ KE E+
Sbjct: 154 QFRAGKIK---ITKEEFARLLEEAVRERIEQSFPIPEIPPEVSAFCAPYVAEIKEQFEVQ 210
Query: 266 IK-----DLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFW 320
K D + FP C+ H ++ +L H R + FL VG+ +E+ L +
Sbjct: 211 KKKFGATDFGAVEPELFPPCISHALANVQGGVNLAHSMRFAMTSFLLNVGMSVEEILNLF 270
Query: 321 KAEFSQKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDHHGC 375
+ FD E Y I H G G +Y P +C + + +G C
Sbjct: 271 NV-------SPDFDAEKTLYQIEHIAGATG--NEYKPPACDTMRTYGNCIGKDGLC 317
>sp|Q97BA1|PRIL_THEVO Probable DNA primase large subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=priB PE=3 SV=1
Length = 327
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 192 IHKGHAYVAMHQVVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRLTPIVEALSMSYL 251
+ KG Y + ++ F SN+ K + ++ S + + D + + E
Sbjct: 143 VIKGIVYCQKDVAIKILRESFVSNMFKVIDSIDQTTASPVLSDQTDSINELRE------- 195
Query: 252 GPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGL 311
+ + + +++I + A FP CM+ + L E ++ H GR+ + FL VG
Sbjct: 196 ---FYKKSVYAKLTIGRGNTKA---FPPCMKEIIRNLHEGINVPHMGRLAIASFLHKVGY 249
Query: 312 RMEDALAFWKAEFSQKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKIISS 365
++ + +++ A FD+ Y I+H G E +Y+P C+ + S+
Sbjct: 250 TEDEIVEYFR-------NAPDFDESITRYQIKHLSG-EISGVEYSPPKCETMRSN 296
>sp|Q46E38|PRIL_METBF Probable DNA primase large subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=priB PE=3 SV=1
Length = 413
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 204 VVSLVVTQFRSNLSKALILTNRKWTSTIREQERDRL-----TPIVEALSMSYLGPDYSQT 258
V L Q RS + +++T + + ++E ++R+ P + + S+ P ++
Sbjct: 147 VWKLTNRQLRSGM---VVVTKKDFVRLLQEAIKERIEKSFPIPKIPSEVSSFCAPYVAEI 203
Query: 259 KEFGEISIK-----DLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRM 313
K+ E+ K D + FP C+ H ++ +L H R + FL VG+ +
Sbjct: 204 KDKFEVHKKKFGTTDFGVVEPDLFPPCISHALANVQGGVNLAHSMRFAMTSFLLSVGMSV 263
Query: 314 EDALAFWKAEFSQKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDH 372
++ L + + FD E Y I H G G Y P +C + + +G
Sbjct: 264 DEILNLFNV-------SPDFDAEVTLYQIEHIAGATGNV--YKPPACDTMRTYGNCIGKD 314
Query: 373 HGC 375
C
Sbjct: 315 RLC 317
>sp|Q9HJD1|PRIL_THEAC Probable DNA primase large subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=priB PE=3 SV=1
Length = 340
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFD 334
S FP CM+ + L ++ H GR+ L FL G ++ + +++ A FD
Sbjct: 224 SMFPPCMKEIIKNLESGVNVSHMGRLALASFLHKAGYSEDEIVPYFR-------NAPDFD 276
Query: 335 KEYA-YSIRHNYGKEGKRTDYTPYSCQKIISS 365
+ Y I+H G E T+YTP C+ + S+
Sbjct: 277 ENITRYQIKHISG-EISGTEYTPPKCETMRSN 307
>sp|Q12U19|PRIL_METBU Probable DNA primase large subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=priB PE=3 SV=1
Length = 364
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 259 KEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALA 318
K+ E + + ++ FP C+ +R +L H R + FL +G+ +++ +A
Sbjct: 216 KKKTEFGVGEFQRVESDLFPPCITQAIANVRAGVNLAHSMRFAMTSFLINIGMSVDEVVA 275
Query: 319 FWKAEFSQKVGAERFDKEYA-YSIRHNYGKEGKRTDYTPYSCQKI 362
+ + FD+E Y I H G T Y P SC +
Sbjct: 276 MFNI-------SPDFDEEKTRYQIEHIAGTSSG-TTYKPPSCNTM 312
>sp|Q8PX26|PRIL_METMA Probable DNA primase large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=priB PE=3 SV=1
Length = 370
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 222 LTNRKWTSTIREQERDRL-----TPIVEALSMSYLGPDYSQTKEFGEISIK-----DLDQ 271
+T +++ + E R+R+ P + S+ P ++ K+ E+ K D
Sbjct: 162 ITKEEFSRLLEEAVRERIEQSFPVPEIPPEVSSFCSPYAAEIKDKFEVQKKKFGSTDFGA 221
Query: 272 LARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAE 331
+ FP C+ + ++ +L H R + FL VG+ +++ L + S AE
Sbjct: 222 VKPELFPPCIAYALANVQGGVNLAHSMRFAMTSFLLNVGMSVDEILNLFN--ISPDFNAE 279
Query: 332 RFDKEYAYSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDHHGC 375
+ Y I H G G Y P +C + + VG C
Sbjct: 280 K----TLYQIEHIAGATG--NTYKPPACDTMRTYGNCVGKDRLC 317
>sp|P04696|GNAT2_BOVIN Guanine nucleotide-binding protein G(t) subunit alpha-2 OS=Bos
taurus GN=GNAT2 PE=2 SV=3
Length = 354
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 19 STLPLYRYAPQLEVRLEDFEVFAMDRLRVLKGISDALARGKRPEEMENLVRDLWK 73
S L + R P L + EV +D R L ++D++ G P E+ ++R LWK
Sbjct: 80 SILAIIRAMPTLGIDYA--EVSCVDNGRQLNNLADSIEEGTMPPELVEVIRKLWK 132
>sp|A2SS72|FTHS_METLZ Formate--tetrahydrofolate ligase OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=fhs PE=3 SV=1
Length = 560
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 240 TPI---VEALSMSYLGPDYSQTKEFGEISIKDLDQLARSSFPLCMRHLFDKLREDHH 293
TPI + AL+ G D + +IKD+D L RS+ P+CM L +D +
Sbjct: 446 TPIKEKINALATRIYGADGVVYSPAADAAIKDIDALGRSNLPICMAKTQYSLSDDPN 502
>sp|B2A611|ADDB_NATTJ ATP-dependent helicase/deoxyribonuclease subunit B
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=addB PE=3 SV=1
Length = 1186
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 361 KIISSTPGVGDHHGCPYRHFSEENLR 386
KI +S G+ CP+RHF+E+NLR
Sbjct: 808 KIATSVSGLESFCQCPFRHFAEQNLR 833
>sp|O13055|GNAI2_ORYLA Guanine nucleotide-binding protein G(i) subunit alpha-2 OS=Oryzias
latipes GN=gnai2 PE=2 SV=3
Length = 355
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 43 DRLRVLKGISDALARGKRPEEMENLVRDLW 72
D R+ K ++A RG PEE+ N+++DLW
Sbjct: 103 DAKRLFKMAAEAEERGDLPEELANIIKDLW 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,708,308
Number of Sequences: 539616
Number of extensions: 6770071
Number of successful extensions: 17420
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 17347
Number of HSP's gapped (non-prelim): 29
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)