Query 012907
Match_columns 453
No_of_seqs 160 out of 346
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lgb_A DNA primase large subun 100.0 3.1E-76 1.1E-80 549.8 12.3 182 262-445 2-193 (194)
2 3l9q_A DNA primase large subun 100.0 4.9E-76 1.7E-80 548.8 6.1 185 265-449 3-190 (195)
3 1zt2_B DNA primase large subun 98.6 2.3E-07 7.9E-12 88.1 11.6 119 87-218 63-189 (212)
4 2dla_A 397AA long hypothetical 90.5 0.32 1.1E-05 44.8 5.3 123 82-222 56-187 (222)
5 1owl_A Photolyase, deoxyribodi 50.2 23 0.00077 36.8 6.3 86 275-389 329-415 (484)
6 2crn_A Ubash3A protein; compac 43.6 47 0.0016 24.9 5.6 53 381-434 9-61 (64)
7 1q08_A Zn(II)-responsive regul 38.5 20 0.00067 28.5 2.9 25 298-322 4-28 (99)
8 2dag_A Ubiquitin carboxyl-term 35.5 1E+02 0.0035 23.7 6.5 43 380-423 8-50 (74)
9 3dfg_A Xcrecx, regulatory prot 35.1 26 0.00089 30.9 3.4 37 375-411 27-63 (162)
10 1vek_A UBP14, ubiquitin-specif 30.8 97 0.0033 24.4 5.8 43 380-423 28-70 (84)
11 2dai_A Ubadc1, ubiquitin assoc 28.6 1.4E+02 0.0046 23.6 6.2 42 380-423 28-69 (83)
12 3d5l_A Regulatory protein RECX 27.8 40 0.0014 31.2 3.5 37 375-411 71-107 (221)
13 2j07_A Deoxyribodipyrimidine p 27.7 85 0.0029 31.8 6.2 48 275-323 290-338 (420)
14 2j4d_A Cryptochrome 3, cryptoc 25.2 90 0.0031 32.6 6.0 49 275-324 371-420 (525)
15 2g6z_A Dual specificity protei 24.4 35 0.0012 31.4 2.4 86 276-365 68-162 (211)
16 3e3v_A Regulatory protein RECX 22.5 27 0.00092 31.3 1.1 37 375-411 28-64 (177)
17 1whc_A RSGI RUH-027, UBA/UBX 3 20.3 2.2E+02 0.0076 21.0 5.7 43 380-423 8-50 (64)
No 1
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-76 Score=549.77 Aligned_cols=182 Identities=43% Similarity=0.888 Sum_probs=171.6
Q ss_pred ccccccchh--hhhhccCcHHHHHHHHHHhccCCCCCchhhHHHHHHhhcCCChHHHHHHHHHHhccccCccccccccce
Q 012907 262 GEISIKDLD--QLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKEYAY 339 (453)
Q Consensus 262 ~~i~~~~id--~l~~~~FPpCMr~L~~~L~~~~hLkH~gR~Ql~lFLKgiGls~eeal~fwr~~F~k~~~~~~F~Key~Y 339 (453)
+.||+++|| .++ ++|||||++||+.|+++|||+|+|||||+||||||||++||+|.||+++|+| |++|+|+|+|+|
T Consensus 2 ~~i~~~~id~~~~~-~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGls~ee~l~f~r~~F~k-~~~d~F~K~y~Y 79 (194)
T 3lgb_A 2 DEINAQSVWSEEIS-SNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIGLSADEALKFWSEAFTN-MTMEKFNKEYRY 79 (194)
T ss_dssp TTSSTTGGGSHHHH-TTCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTT-SCHHHHHHHTHH
T ss_pred CcCCHHHcCcHhhh-ccCcHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHHHccc-CChhhhccceee
Confidence 468999999 888 7999999999999999999999999999999999999999999999999996 898999999999
Q ss_pred eeeeeccCCCCCcccCCccchhhhcc-CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHH
Q 012907 340 SIRHNYGKEGKRTDYTPYSCQKIISS-TPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLT 418 (453)
Q Consensus 340 nIrH~YG~eGkr~~Y~p~sC~kiis~-~p~~g~~HGCPfr~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~ 418 (453)
||||+||+||+|++|+||||+||+++ +||+||+|||||||||.++|+++|+++||+.++|++|+++++++|||+||++|
T Consensus 80 ~IrH~yG~eG~r~~Y~p~sC~~i~s~~~pg~gd~HGCPfr~~~~~~L~~~L~~~gv~~~~i~~I~~~~~~~~y~~AC~k~ 159 (194)
T 3lgb_A 80 SFRHNYGLEGNRINYKPWDCHTILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGEYTIACTKV 159 (194)
T ss_dssp HHHHHTTCSTTCCCCCCCCHHHHHHSCCCCTTCCCSCHHHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeeeecCCCCCCcccCCCChHHHHhCCCCCCCCcCCCCcCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCChhHHHHHH
Confidence 99999999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC-------CCcccCchHHHHHHHccc
Q 012907 419 FEAVHSSSC-------DAGINHPNQYFSDSHKIL 445 (453)
Q Consensus 419 Fe~~h~~~~-------~~~i~HPN~Yf~~S~~~~ 445 (453)
||.||+... +.+|+||||||++|+++.
T Consensus 160 Fe~tH~~~~~~~~~~~~~~i~HPN~Yf~~S~~l~ 193 (194)
T 3lgb_A 160 FEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQ 193 (194)
T ss_dssp HHHHC------------CCCCCHHHHHHHHHHHC
T ss_pred HHHHcCCcccccccccCCCccCcHHHHHHHHHhh
Confidence 999998653 368999999999999875
No 2
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=100.00 E-value=4.9e-76 Score=548.80 Aligned_cols=185 Identities=52% Similarity=1.008 Sum_probs=161.0
Q ss_pred cccchhhhhhccCcHHHHHHHHHHhccCCCCCchhhHHHHHHhhcCCChHHHHHHHHHHhcc-ccCccccccccceeeee
Q 012907 265 SIKDLDQLARSSFPLCMRHLFDKLREDHHLKHGGRMQLGLFLKGVGLRMEDALAFWKAEFSQ-KVGAERFDKEYAYSIRH 343 (453)
Q Consensus 265 ~~~~id~l~~~~FPpCMr~L~~~L~~~~hLkH~gR~Ql~lFLKgiGls~eeal~fwr~~F~k-~~~~~~F~Key~YnIrH 343 (453)
++++||.|++++|||||++||+.|+++|||+|+|||||+||||||||++||||.|||++|+| +|++|+|+|+|+|||||
T Consensus 3 ~~~~id~l~~~~fPpCM~~l~~~Lr~~~hL~h~gR~ql~lFLkgiGls~ee~l~fwr~~F~k~~~~~d~f~K~y~Y~IrH 82 (195)
T 3l9q_A 3 SLDQIDLLSTKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRH 82 (195)
T ss_dssp EGGGGHHHHHHHSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTEEEEEEECTTCC-----------CCCCEEEEEEE
T ss_pred cHHHHHhhccccCCHHHHHHHHHHHcCCCCCchhHHHHHHHHHhCCCCHHHHHHHHHHHhccccCChhhhhhhhheeeee
Confidence 57899999999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred eccCCCCCcccCCccchhhhcc-CCCCCCCCCCCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHH
Q 012907 344 NYGKEGKRTDYTPYSCQKIISS-TPGVGDHHGCPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAV 422 (453)
Q Consensus 344 ~YG~eGkr~~Y~p~sC~kiis~-~p~~g~~HGCPfr~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~ 422 (453)
+||+||+|++|+||||+|||++ +||+||+|||||||||.+.|+++|+++||++.+|++|+++++++|||+||++|||.|
T Consensus 83 ~yG~eG~r~~Y~p~sC~~ii~~~~p~~gd~HGCPfr~~~~~~L~~~L~~~~v~~~~i~~I~~~~~~~~y~~AC~k~Fe~t 162 (195)
T 3l9q_A 83 SFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHYQVACQKYFEMI 162 (195)
T ss_dssp CC------CCCCCCCHHHHHHSCCCCTTCCCSCHHHHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ecCCCCCCcccCCCCcHHHHhCCCCCCCCcCCCCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 9999999999999999999976 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCcccCchHHHHHHHcccCccC
Q 012907 423 HSSS-CDAGINHPNQYFSDSHKILQPKN 449 (453)
Q Consensus 423 h~~~-~~~~i~HPN~Yf~~S~~~~~~~~ 449 (453)
|+.. .+.+|+||||||++|+++..+..
T Consensus 163 H~~~~~~~~i~HPN~Yf~~S~~~~~~~~ 190 (195)
T 3l9q_A 163 HNVDDCGFSLNHPNQFFCESQRILNGGK 190 (195)
T ss_dssp HTCSCCCSCCCCHHHHHHHHHHHHTC--
T ss_pred cCCccCCCcccChHHHHHHHHHHHhCCc
Confidence 9854 45779999999999999887754
No 3
>1zt2_B DNA primase large subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: a.262.1.1
Probab=98.60 E-value=2.3e-07 Score=88.07 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCCccCCHHHHHHHHHHHHHHhhhcCCC
Q 012907 87 KDIISHFVLRLVYC-RTEDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENAKEKLEQVARSFDQP 165 (453)
Q Consensus 87 kD~iSHfiLRLa~c-~s~elrrwFi~~E~~LF~~R~~~~~~~~~~~fl~~~~l~~~~is~~e~~~~~~~L~~~~~~~~~~ 165 (453)
.+.+|++.+-++.| .++.+.++|+..|++.|..||..++.+.+..+...+|++.+....-++ .....
T Consensus 63 ~el~~y~allivs~~~d~~l~~r~a~~EA~~a~~~L~~e~~e~l~~ia~~lgi~~~~~~~l~~------------~l~~~ 130 (212)
T 1zt2_B 63 PVLVFYTTLLSLAILNDVKLIRRYAYAEAKQFRSLLHTENEENLLEISKLLDLKINRCDPIKF------------YLEKK 130 (212)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCCEEEEEEEE------------ECSSS
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcCcccccccccch------------hhhcc
Confidence 46788833334555 699999999999999999999999888888888899998753111000 00000
Q ss_pred CCCCCCceEeecccchHhhhcccc-------eEEeccEEEEehhhHHHHHHHHHHHHHHH
Q 012907 166 LPTADAIFYKVPFEEVPELVAGRR-------VYIHKGHAYVAMHQVVSLVVTQFRSNLSK 218 (453)
Q Consensus 166 ~~~~~~~~~kVpF~~v~~LV~~R~-------v~L~~G~ayVp~~~l~~lv~~~fr~~L~~ 218 (453)
... ....|+|||.+++.++.... ..|.+|+|||+.+++.+|+.++++.++.+
T Consensus 131 ~~~-~~~~y~i~~~dYL~la~~~~~~WrLvNr~v~~G~V~l~k~el~rLl~Eai~~~i~~ 189 (212)
T 1zt2_B 131 RRI-IQKEFCVHFIDYLKYTKDLKEDWKLSGQILHKGYVYLDKNQLIGLIAESIKSKIVE 189 (212)
T ss_dssp SSE-EEEEEEEEHHHHHHHTTTSCGGGCTTSSCEETTEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCceeEeeHHHHHHHccCCCccceeeeeEccCcEEEEcHHHHHHHHHHHHHHHHHH
Confidence 011 23468999999988886511 35999999999999999999999999998
No 4
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=90.45 E-value=0.32 Score=44.82 Aligned_cols=123 Identities=19% Similarity=0.351 Sum_probs=80.8
Q ss_pred chhhhhhhHHHHHHH--HHhcCC---hHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCCCccCCHHHHHHH-HHHH
Q 012907 82 SEDVNKDIISHFVLR--LVYCRT---EDLRKWFLSMETALYRYRFLLGSSEAKRALMEEFDLPCKAISRTEFENA-KEKL 155 (453)
Q Consensus 82 ~~~~~kD~iSHfiLR--La~c~s---~elrrwFi~~E~~LF~~R~~~~~~~~~~~fl~~~~l~~~~is~~e~~~~-~~~L 155 (453)
..+..+|.++.|.|- |||+.- -++.+ ++-..++.-|+..... +....++.+.+++.|+-.- ...|
T Consensus 56 ~~e~~kDL~~FYALLGALa~SPYGlEmElVk---~aNl~iYseRi~r~k~------i~~~~i~v~~v~~~E~P~~D~~il 126 (222)
T 2dla_A 56 DQDNVMDLAQFYALLGALSYSPYGIELELVK---KANLIIYSERLKRKKE------IKPEEISIDVSTAIEFPTEDVRKI 126 (222)
T ss_dssp SCCHHHHHHHHHHHHHHHTTSCSSHHHHHHH---HHHHHHHHHHHTTCSS------CCTTTSSSSEEECCCCCGGGHHHH
T ss_pred ChHHHHHHHHHHHHHhhhhcCCcccchhhHh---hhhHHHHHHHHHHhcc------CCcceeeeeecccccCCchHHHHH
Confidence 355778999999998 677752 34422 4556677777764322 2333444544443332110 0112
Q ss_pred HHHhhhcCCCCCCCCCceEeecccchHhhh-cc--cceEEeccEEEEehhhHHHHHHHHHHHHHHHHHHH
Q 012907 156 EQVARSFDQPLPTADAIFYKVPFEEVPELV-AG--RRVYIHKGHAYVAMHQVVSLVVTQFRSNLSKALIL 222 (453)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~kVpF~~v~~LV-~~--R~v~L~~G~ayVp~~~l~~lv~~~fr~~L~~~L~~ 222 (453)
... .+. -.-|+|+-.+.++|+ .. ..||+.+|+||+..+++..+-..+|..++.++...
T Consensus 127 Er~---~~~------LpeYk~~l~~FL~L~p~~sLk~~YIr~G~vYLr~e~li~lW~KAFEkN~EkaVN~ 187 (222)
T 2dla_A 127 ERV---YGK------IPEYTMKISDFLDLVPDEKLANYYIYEGRVYLKREDLIRIWSKAFERNVERGVNM 187 (222)
T ss_dssp HHH---HSS------CCCEEEEHHHHHHHCTTSCGGGSEEETTEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---hcc------cchhheeHHHHhhhccccccceEEEEcCeEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 125999999999999 33 56999999999999999999999999999988764
No 5
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=50.22 E-value=23 Score=36.80 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=61.1
Q ss_pred ccCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHHHhccccCccccccccceeeeeeccCCCCCcc
Q 012907 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKAEFSQKVGAERFDKEYAYSIRHNYGKEGKRTD 353 (453)
Q Consensus 275 ~~FPpCMr~L~~~L~~~~hLkH~gR~Ql~lFL-KgiGls~eeal~fwr~~F~k~~~~~~F~Key~YnIrH~YG~eGkr~~ 353 (453)
+.|| |+-+.+..|..+.-+-|-+||-.+.|| |.+|++-.+.-++|...+ .+
T Consensus 329 TG~P-~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~l---------------------------lD 380 (484)
T 1owl_A 329 TGYP-IVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHL---------------------------VD 380 (484)
T ss_dssp SSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTC---------------------------TT
T ss_pred CCCh-hHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhc---------------------------cc
Confidence 3566 888888899999999999999999999 888999877766664422 45
Q ss_pred cCCccchhhhccCCCCCCCCCCCCCCCCHHHHHHHH
Q 012907 354 YTPYSCQKIISSTPGVGDHHGCPYRHFSEENLRAAL 389 (453)
Q Consensus 354 Y~p~sC~kiis~~p~~g~~HGCPfr~~~~~~L~~~L 389 (453)
|-+++..-+....-|.| ++.=|||.|++..-.++.
T Consensus 381 ~d~a~n~g~wqw~ag~G-~d~~pfRifNp~~q~~kf 415 (484)
T 1owl_A 381 GDLAANNGGWQWSASSG-MDPKPLRIFNPASQAKKF 415 (484)
T ss_dssp CCHHHHHHHHHHTTTCS-SSCCCCCCCCHHHHHHHH
T ss_pred CCcccCHHHHHHhhCcC-CCCCccceeCHHHHhhhc
Confidence 55666655555433433 234569998887655443
No 6
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.57 E-value=47 Score=24.88 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHcCCCCCCcccCc
Q 012907 381 SEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVHSSSCDAGINHP 434 (453)
Q Consensus 381 ~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h~~~~~~~i~HP 434 (453)
+++.| +.|..||.+......-+..+.+...+.|...+|+.......+..+..|
T Consensus 9 ~e~~v-~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~ 61 (64)
T 2crn_A 9 SPSLL-EPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGP 61 (64)
T ss_dssp SCSSH-HHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCC
T ss_pred CHHHH-HHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCC
Confidence 44556 445569999988888888887778999999999866533333444444
No 7
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=38.53 E-value=20 Score=28.47 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.1
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHH
Q 012907 298 GRMQLGLFLKGVGLRMEDALAFWKA 322 (453)
Q Consensus 298 gR~Ql~lFLKgiGls~eeal~fwr~ 322 (453)
.|+++-.+||.+|||++|+-.+...
T Consensus 4 ~rL~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5889999999999999999888753
No 8
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.46 E-value=1e+02 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012907 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+++.|.++ ..||.+.......+..+.+...+.|+..+|+..-
T Consensus 8 ~~e~~v~~L-~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 8 LDESVIIQL-VEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp SCHHHHHHH-HHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 577777554 5599998888888888776679999999998654
No 9
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=35.08 E-value=26 Score=30.87 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012907 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfr~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|=++..+...|+++|...|++++.|+.|++..+...|
T Consensus 27 Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ 63 (162)
T 3dfg_A 27 LVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGW 63 (162)
T ss_dssp HHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred hhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 4456678899999999999999999999999988777
No 10
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.76 E-value=97 Score=24.43 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012907 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+.+.+.++ ..||.+.......+..+.++.-+.|+..+|+..-
T Consensus 28 ~~e~~v~~L-~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 28 ANEEIVAQL-VSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 577777554 5699999888888888777789999999998554
No 11
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.60 E-value=1.4e+02 Score=23.56 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012907 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+.+.|.++ ..||.+.......+..+ ++.-+.|...+|+..-
T Consensus 28 ~~e~~i~~L-~~MGF~~~~a~~AL~~t-~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 28 VDEAALRQL-TEMGFPENRATKALQLN-HMSVPQAMEWLIEHAE 69 (83)
T ss_dssp CCHHHHHHH-HHHTCCHHHHHHHHHHT-TSCHHHHHHHHHHGGG
T ss_pred CCHHHHHHH-HHcCCCHHHHHHHHHHh-CCCHHHHHHHHHHCCC
Confidence 477777555 55999998888888877 7789999999998654
No 12
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=27.81 E-value=40 Score=31.20 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012907 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfr~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|-++..+...|+++|...|++++.|+.|++..+...|
T Consensus 71 Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ 107 (221)
T 3d5l_A 71 LSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQL 107 (221)
T ss_dssp HTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred hccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 5566678999999999999999999999999888877
No 13
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=27.71 E-value=85 Score=31.78 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=40.4
Q ss_pred ccCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHHH
Q 012907 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKAE 323 (453)
Q Consensus 275 ~~FPpCMr~L~~~L~~~~hLkH~gR~Ql~lFL-KgiGls~eeal~fwr~~ 323 (453)
+.|| |+-+-+..|..+.-+-|-+||-.+.|| |.+|++-.+.-++|...
T Consensus 290 TG~P-~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~ 338 (420)
T 2j07_A 290 TGVP-LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHL 338 (420)
T ss_dssp SSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred CCcH-hHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3566 888888889999999999999999998 77899988877777654
No 14
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=25.22 E-value=90 Score=32.63 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=42.6
Q ss_pred ccCcHHHHHHHHHHhccCCCCCchhhHHHHHH-hhcCCChHHHHHHHHHHh
Q 012907 275 SSFPLCMRHLFDKLREDHHLKHGGRMQLGLFL-KGVGLRMEDALAFWKAEF 324 (453)
Q Consensus 275 ~~FPpCMr~L~~~L~~~~hLkH~gR~Ql~lFL-KgiGls~eeal~fwr~~F 324 (453)
+.|| |+-+.+..|..+.-+-|-.||-.+.|| |.+|++-.+.-++|...+
T Consensus 371 TG~P-~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~L 420 (525)
T 2j4d_A 371 TGYP-LIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCL 420 (525)
T ss_dssp SSCH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHC
T ss_pred CCCh-HHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHHHHhc
Confidence 3566 899999999999999999999999998 789999888888887654
No 15
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=24.36 E-value=35 Score=31.37 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=43.0
Q ss_pred cCcHHHHHHHHHHhccC----CCCCc-hhhH---HHHHHhhcCCChHHHHHHHHHHhccccCccccccc-cceeeeeecc
Q 012907 276 SFPLCMRHLFDKLREDH----HLKHG-GRMQ---LGLFLKGVGLRMEDALAFWKAEFSQKVGAERFDKE-YAYSIRHNYG 346 (453)
Q Consensus 276 ~FPpCMr~L~~~L~~~~----hLkH~-gR~Q---l~lFLKgiGls~eeal~fwr~~F~k~~~~~~F~Ke-y~YnIrH~YG 346 (453)
.|+.|..-|.+.+..+. |=.++ +|=. .+..++.-|++++||+.+.++.=......+.|-++ ..|.-+
T Consensus 68 ~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~~~g~s~~eAl~~vr~~Rp~i~pN~~f~~qL~~~e~~---- 143 (211)
T 2g6z_A 68 HFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYESE---- 143 (211)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHH----
Confidence 58889888888776553 44556 6743 33456778999999999998852212223455444 223221
Q ss_pred CCCCCcccCCccchhhhcc
Q 012907 347 KEGKRTDYTPYSCQKIISS 365 (453)
Q Consensus 347 ~eGkr~~Y~p~sC~kiis~ 365 (453)
+.|++.+=.+++|..-..+
T Consensus 144 l~~~~~~p~~~~c~~e~~~ 162 (211)
T 2g6z_A 144 ILPSTPNPQPPSCQGEAAG 162 (211)
T ss_dssp HSCC---------------
T ss_pred HhccCCCCCCCCccccccc
Confidence 2345566667899976664
No 16
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.46 E-value=27 Score=31.29 Aligned_cols=37 Identities=8% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHhCCCCchhHHHHHHHhhccch
Q 012907 375 CPYRHFSEENLRAALGRMGVGSRAMEDVVDKVRNRHY 411 (453)
Q Consensus 375 CPfr~~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~y 411 (453)
|-++..+...|+++|...|++++.|+.|++..+...|
T Consensus 28 Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ 64 (177)
T 3e3v_A 28 LSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDL 64 (177)
T ss_dssp HHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTS
T ss_pred hccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 4456678899999999999999999999999988887
No 17
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.28 E-value=2.2e+02 Score=21.00 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhCCCCchhHHHHHHHhhccchHHHHHHHHHHHc
Q 012907 380 FSEENLRAALGRMGVGSRAMEDVVDKVRNRHYQLACTLTFEAVH 423 (453)
Q Consensus 380 ~~~~~L~~~L~~~gi~~~~i~~I~~~~~~~~yq~AC~~~Fe~~h 423 (453)
.+++.|.+ |..||.+.......+..+.++..+.|...+|+..-
T Consensus 8 ~~~~~v~~-L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 8 AELTALES-LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp CCCCHHHH-HHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHH-HHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 46666754 45699999888888888766889999999987543
Done!