Query 012908
Match_columns 453
No_of_seqs 199 out of 731
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.4 8.2E-13 2.8E-17 134.4 15.1 180 244-437 245-438 (451)
2 3o7q_A L-fucose-proton symport 99.2 3.1E-11 1.1E-15 122.4 11.6 164 243-421 250-421 (438)
3 4aps_A DI-OR tripeptide H+ sym 98.9 2.1E-08 7.3E-13 103.4 14.8 178 251-438 283-477 (491)
4 2gfp_A EMRD, multidrug resista 98.6 3.4E-08 1.2E-12 98.1 5.2 142 244-393 192-341 (375)
5 4aps_A DI-OR tripeptide H+ sym 98.6 3.2E-07 1.1E-11 94.5 12.5 170 251-435 13-199 (491)
6 1pw4_A Glycerol-3-phosphate tr 98.5 2.7E-07 9.1E-12 93.4 8.8 170 249-433 26-207 (451)
7 3o7q_A L-fucose-proton symport 98.3 2.9E-06 1E-10 85.5 11.9 116 274-395 49-174 (438)
8 2cfq_A Lactose permease; trans 98.3 2E-06 6.7E-11 87.5 9.1 172 244-431 213-398 (417)
9 2gfp_A EMRD, multidrug resista 98.2 6.9E-07 2.4E-11 88.6 4.4 158 256-427 5-169 (375)
10 2xut_A Proton/peptide symporte 98.2 3.1E-06 1.1E-10 87.9 9.5 167 250-430 11-196 (524)
11 4gc0_A D-xylose-proton symport 98.0 0.00014 4.9E-09 74.4 17.5 182 249-438 274-468 (491)
12 2xut_A Proton/peptide symporte 98.0 4.9E-05 1.7E-09 78.8 13.6 113 323-437 376-507 (524)
13 4gc0_A D-xylose-proton symport 97.8 8.4E-05 2.9E-09 76.1 10.2 98 289-392 60-176 (491)
14 2cfq_A Lactose permease; trans 97.1 0.00014 4.7E-09 73.7 2.3 69 247-315 3-74 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=8.2e-13 Score=134.38 Aligned_cols=180 Identities=17% Similarity=0.117 Sum_probs=131.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhh--hhccCCc
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEII--VRDYAYP 318 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l--~~~~~~~ 318 (453)
.++.++++.+|.+.+..++......++......+.++ +|.+... ...++.++++.+|+++.|+++||+ ++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~---- 320 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---- 320 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----
Confidence 4678899999999998888776666666666666666 6777643 478889999999999999999998 542
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----h-hhhhH
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----L-ANPAG 390 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~---~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----l-a~~ig 390 (453)
...+....+..+++.+++... +...+.+...+.|++++..+.....++.|.+..++.|+.+|+.. + +..++
T Consensus 321 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 321 -GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 222222223332555554433 23346678888999999999999999999999999999999974 5 66677
Q ss_pred hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 391 SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 391 ~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
+.+.+. .+.. .|+.+|.+.+++++++.++.+++.++.+
T Consensus 400 ~~~~g~l~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 1pw4_A 400 SAIVGYTVDFF---------GWDGGFMVMIGGSILAVILLIVVMIGEK 438 (451)
T ss_dssp HHHHHHHHHSS---------CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---------CcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 776664 2221 2999999999999888887776654443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=3.1e-11 Score=122.38 Aligned_cols=164 Identities=8% Similarity=0.050 Sum_probs=115.3
Q ss_pred CHHHHhhcHHHHHHHHHHHhhccccceeecchHHH-HHHh-CCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCc
Q 012908 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (453)
Q Consensus 243 t~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i-~~al-g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~ 318 (453)
+.++.++++.+|...+..++..+...++....... .++. |.+... ...++..+.+.+||++.|+++||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--- 326 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--- 326 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---
Confidence 34677889999999999999888777777788888 7775 877543 4788889999999999999999997642
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH---hhhhhhHhhhhc
Q 012908 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL---TLANPAGSIFTS 395 (453)
Q Consensus 319 r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~---~la~~ig~~l~~ 395 (453)
.+....++.+++.+++...+.....+...+.|+++|..++...+.+.|.++.+ -++.-++. .++..+++.+.+
T Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 327 ---VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMG 402 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHH
Confidence 23344445555555444444334455668999999999999999999999854 44444443 355566666655
Q ss_pred C-cCCCCCCcccCCcccHHHHHHHHHH
Q 012908 396 M-PRVDEPLKCEGSICYFLTSMIMSGL 421 (453)
Q Consensus 396 ~-~~~~~~~~C~G~~Cy~~~f~i~~~~ 421 (453)
. .+. .+.|+.+|.+.+..
T Consensus 403 ~l~~~--------~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 403 FVSDA--------AGNIPTAELIPALC 421 (438)
T ss_dssp HHHHH--------HTSSGGGGHHHHHH
T ss_pred HHHHH--------hcchHHHHHHHHHH
Confidence 4 221 12377777765433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.87 E-value=2.1e-08 Score=103.37 Aligned_cols=178 Identities=10% Similarity=0.031 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHH-hCCC--hhhHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~--~~~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~ 327 (453)
..+|.+++..++....-...........++ .+.+ ......++.++...++....|+++||++||+.. +.+.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~-~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPS-SPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHH
Confidence 334555544444333333334444445554 3443 234466778888888999999999999886432 233444455
Q ss_pred HHHHHHHHHHhc----------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhh
Q 012908 328 FVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 393 (453)
Q Consensus 328 ~~~~~~~ll~~~----------~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l 393 (453)
.+.+++.+++.. .+...+.+..++.|++.|..+.....++.|.+..++-|+..|+.. ++..+|+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443322 123356778899999999999999999999999998999888864 566666666
Q ss_pred hcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 394 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 394 ~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
.+.... .-|...|.+.+++++++.++.+.+..+.|+
T Consensus 442 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 442 VTLYNA---------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGG---------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554221 127778888888888877776665554444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.57 E-value=3.4e-08 Score=98.12 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=94.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchh
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~ 320 (453)
.++.+|++++|.+.+..++.......+......+.++ .|.++. ....++.++...+|++..|.++||.++ |.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~ 266 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LM 266 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3567889999999988887665555555555555555 565543 236777888889999999999988754 21
Q ss_pred HHHHHHHHHHHHHHH--HHhc---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhhh
Q 012908 321 VAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 393 (453)
Q Consensus 321 ~~l~~~~~~~~~~~l--l~~~---~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~l 393 (453)
.. .... ....+.. .+.. .+...+.+...+.|+++|..+......+.|.+. ++.|+..|+......+|..+
T Consensus 267 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~ 341 (375)
T 2gfp_A 267 WQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV 341 (375)
T ss_dssp HH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH
Confidence 11 1111 1112211 1111 122345678889999999999999999999998 89999999976544444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.57 E-value=3.2e-07 Score=94.45 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhhccccceeecchHHHHHH------hCCChhh--HHHHHHHHhhhhccccccchhhh-hhhccCCchhH
Q 012908 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 321 (453)
Q Consensus 251 ~~FWll~~~~~~~~g~gl~~i~n~~~i~~a------lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-l~~~~~~~r~~ 321 (453)
+.+|.+++..++....-..+...+....++ +|.+..+ ...++..+...+|.+.+|.++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877776655544555555555554 6877654 48899999999999999999999 78752
Q ss_pred HHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccc--hhhhhhhH----hhhhhhHhhhh
Q 012908 322 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFL----TLANPAGSIFT 394 (453)
Q Consensus 322 ~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~--fg~~yg~~----~la~~ig~~l~ 394 (453)
.+.+..++.+++.+++... +...++++-++.|++.|..++..+++++|.|..++ -++.++.. .++..+|+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 3445556666666655443 44568889999999999999999999999999877 55555553 35555555554
Q ss_pred cC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 012908 395 SM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 435 (453)
Q Consensus 395 ~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r 435 (453)
+. .+. ..|+.+|.+.+..++++.++.+....+
T Consensus 167 ~~l~~~---------~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQEA---------AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHH---------SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhh---------hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 43 111 139999999887777776665554433
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.47 E-value=2.7e-07 Score=93.44 Aligned_cols=170 Identities=13% Similarity=0.087 Sum_probs=113.6
Q ss_pred hcHHHHHHHHHHHhhccccceeecchHHHHHHhCCChh--hHHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~alg~~~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~ 326 (453)
+.+.++.+++..++....-.++..-+..+.+++ .++. ....++..+...++.+.+|.++||++||+ .+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHH
Confidence 344455555555444333333333445555566 5543 34889999999999999999999998752 34555
Q ss_pred HHHHHHHHHHHhc-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcC-
Q 012908 327 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSM- 396 (453)
Q Consensus 327 ~~~~~~~~ll~~~-----~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~- 396 (453)
.++.+++.++... .+...++++-++.|++.|..+....++++|+|..|+-++..|+.. ++..+|+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655433 344568889999999999999999999999999899998888864 333444433322
Q ss_pred cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 012908 397 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 433 (453)
Q Consensus 397 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~ 433 (453)
.+.. | .+|.+|++.+.++++..++..+..
T Consensus 179 ~~~~------g--~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 179 MAWF------N--DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHT------C--CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHh------c--cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1110 1 378888888887777666554443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.31 E-value=2.9e-06 Score=85.47 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHH---hc-cCchhHHH
Q 012908 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL---GM-GWPGAMYV 347 (453)
Q Consensus 274 ~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~---~~-~~~~~l~~ 347 (453)
..++.+++|.++.+ ...++..+...++.+.+|.++||++||+ .+.+..++.+++.++. .. .+...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 44566778888654 4889999999999999999999998852 3445555556665554 33 34456788
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 348 ~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
+-++.|++.|..+.....+++|.+..|+-++..|+.. ++..+|+.+.+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999877777654 44445544433
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.25 E-value=2e-06 Score=87.48 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=108.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccccceee-cchHHHHHHh-CCC---hh--hHHHHHHHHhhhhccccccchhhhhhhccC
Q 012908 244 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSL-GYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (453)
Q Consensus 244 ~~~~l~s~~FWll~~~~~~~~g~gl~~i-~n~~~i~~al-g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~l~~~~~ 316 (453)
.++.++++++|.+++..++.. ...... .......++. +.. .. ....++..+++.+|++..|+++||++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 456788999998776644332 122211 1222333332 211 11 23566777888999999999999997742
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhH-h----hhhhhH
Q 012908 317 YPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-T----LANPAG 390 (453)
Q Consensus 317 ~~r~~~l~~~~~~~~~~~ll~~~~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~-~----la~~ig 390 (453)
.+....++++++.+++... +...+.+...+.+++++.........++|.+..+.-|+.+|+. . ++..+|
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 2233444445555444432 3334555666778888877777788999999999999988874 3 556666
Q ss_pred hhhhcC-cCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFTSM-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 431 (453)
Q Consensus 391 ~~l~~~-~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~ 431 (453)
|.+.+. .+. . .|+..|.+.+++++++.++.+.
T Consensus 366 p~l~G~l~~~--------~-g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 366 SVLAGNMYES--------I-GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp THHHHTHHHH--------S-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHh--------c-CcHHHHHHHHHHHHHHHHHHHh
Confidence 666654 221 1 2888999988888887766543
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.21 E-value=6.9e-07 Score=88.62 Aligned_cols=158 Identities=9% Similarity=0.124 Sum_probs=106.1
Q ss_pred HHHHHHhhccccceeecchHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHH
Q 012908 256 IFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 333 (453)
Q Consensus 256 l~~~~~~~~g~gl~~i~n~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~ 333 (453)
+++..++......++......+.+++|.++.+ ...++..+...++.+.+|+++||++||+.. .....+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHH
Confidence 33334333333333334455666778887654 488899999999999999999999886543 2333444444
Q ss_pred HHHHhc-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhcCcCCCCCCcccCC
Q 012908 334 HIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGS 408 (453)
Q Consensus 334 ~ll~~~-~~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~~~~~~~~~~C~G~ 408 (453)
.++... .+...+++..++.|++.|..+.....+++|.+..|+.++..|... ++..+|+.+.+.... .
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~ 150 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT--------M 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------H
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------h
Confidence 443332 334467788999999999999999999999999999888888864 344444444332111 1
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 012908 409 ICYFLTSMIMSGLCIVAVI 427 (453)
Q Consensus 409 ~Cy~~~f~i~~~~~~~~~~ 427 (453)
..++.+|.+.+.++++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 1388888888777665554
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.21 E-value=3.1e-06 Score=87.94 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHhhccccceeecchHHHH-HHhC------CChhh--HHHHHHHHhhhhccccccchhhhh-hhccCCch
Q 012908 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLG------YDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 319 (453)
Q Consensus 250 s~~FWll~~~~~~~~g~gl~~i~n~~~i~-~alg------~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l-~~~~~~~r 319 (453)
++.+|.+++..++....-.++...+.... +++| .+..+ ...++..+...++.+.+|.++||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 45677777777666555444455555444 4577 66543 488899999999999999999998 7742
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhh---hhhh----HhhhhhhH
Q 012908 320 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNF----LTLANPAG 390 (453)
Q Consensus 320 ~~~l~~~~~~~~~~~ll~~~-~-~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~---~yg~----~~la~~ig 390 (453)
.+.+..++.+++.+++.. . +...++++.++.|++.|..+...+++++|.|..++-++ .+|+ ..++..+|
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 234445555555555443 3 44567788999999999999999999999999877643 3333 34666666
Q ss_pred hhhhcCcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHH
Q 012908 391 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 430 (453)
Q Consensus 391 ~~l~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l 430 (453)
+.+.+.... ...++.+|.+.+.+.+++.++.+
T Consensus 165 ~~~~~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLK--------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHH--------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 655443110 12389999988877666555443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.02 E-value=0.00014 Score=74.37 Aligned_cols=182 Identities=16% Similarity=0.096 Sum_probs=95.2
Q ss_pred hcHHHHHHHHHHHhhccccceeecc-hHHHHHHhCCChhh--HHHHHHHHhhhhccccccchhhhhhhccCCchhHHHHH
Q 012908 249 IKADFWLIFFSLLLGSGSGLTVIDN-LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (453)
Q Consensus 249 ~s~~FWll~~~~~~~~g~gl~~i~n-~~~i~~alg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~ 325 (453)
+.+..+.......+....|...+.. ...+.+..+.+... ....+.++.+..+-++++++.||++||+.. ..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~ 347 (491)
T 4gc0_A 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------II 347 (491)
T ss_dssp CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HH
T ss_pred cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------cc
Confidence 3344444444444444444443333 33455566666543 355677888999999999999999885321 22
Q ss_pred HHHHHHHHHHHH----hccCchh-HHHHHHHHHhhhhhhcc-hhHHHHHHhhcccchhhhhhhHh----hhhhhHhhhhc
Q 012908 326 AQFVMAIGHIFL----GMGWPGA-MYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 395 (453)
Q Consensus 326 ~~~~~~~~~ll~----~~~~~~~-l~~~~~liG~~yG~~~~-~~p~i~s~~FG~k~fg~~yg~~~----la~~ig~~l~~ 395 (453)
....++++.+.+ ....+.. ..+...+...+++..++ +...+++|.|..+.=++-.|+.. ++..++++++.
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221 1222222 22333444445555554 34478899999887677666653 34444444332
Q ss_pred CcCCCCCCcccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012908 396 MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 438 (453)
Q Consensus 396 ~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r~ 438 (453)
....... -...-....+|++.+++++++.+....+.-.||.
T Consensus 428 ~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 428 MMDKNSW--LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHCHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 1000000 0001123457888888888888877665544543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.00 E-value=4.9e-05 Score=78.75 Aligned_cols=113 Identities=13% Similarity=0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhcc----------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHh----hhhh
Q 012908 323 MAVAQFVMAIGHIFLGMG----------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANP 388 (453)
Q Consensus 323 l~~~~~~~~~~~ll~~~~----------~~~~l~~~~~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~----la~~ 388 (453)
+.+..++++++.+++... +...+.+..++.|+++|........++.|.+..++-|+-.|+.. ++..
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 344555555665544331 22346678899999999999999999999999999999888864 5666
Q ss_pred hHhhhhcCcCCCCCCc-----ccCCcccHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012908 389 AGSIFTSMPRVDEPLK-----CEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 437 (453)
Q Consensus 389 ig~~l~~~~~~~~~~~-----C~G~~Cy~~~f~i~~~~~~~~~~l~l~l~~r~r 437 (453)
+|+.+.+......... -.+. .+..|.+.+++++++.++.+++..+++
T Consensus 456 ~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 456 WVLLANVSVKSPTVTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhcccccccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666665421100000 0000 133477777777777776665554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.75 E-value=8.4e-05 Score=76.12 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=75.2
Q ss_pred HHHHHHHhhhhccccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHh-------------------ccCchhHHHHH
Q 012908 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-------------------MGWPGAMYVGT 349 (453)
Q Consensus 289 ~Vsl~si~n~~GRl~~G~lsD~l~~~~~~~r~~~l~~~~~~~~~~~ll~~-------------------~~~~~~l~~~~ 349 (453)
.+|.+.++..+|-+++|+++||++||+ .+.+..+++.++.++.+ ..+...+.++=
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 677888899999999999999999963 33455555555554433 22334688899
Q ss_pred HHHHhhhhhhcchhHHHHHHhhcccchhhhhhhHhhhhhhHhh
Q 012908 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSI 392 (453)
Q Consensus 350 ~liG~~yG~~~~~~p~i~s~~FG~k~fg~~yg~~~la~~ig~~ 392 (453)
++.|++.|+...+.|.+++|+...++-|...++...+..+|..
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~ 176 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL 176 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence 9999999999999999999999998888887776655544443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.13 E-value=0.00014 Score=73.71 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=52.0
Q ss_pred HhhcHHHHHHHHHHHhhccccceeecchHHHHHH-hCCChhh--HHHHHHHHhhhhccccccchhhhhhhcc
Q 012908 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 315 (453)
Q Consensus 247 ~l~s~~FWll~~~~~~~~g~gl~~i~n~~~i~~a-lg~~~~~--~~Vsl~si~n~~GRl~~G~lsD~l~~~~ 315 (453)
.+|+++||.+....++....-.++..-+....++ +|.++.+ ..+++..+...+|++.+|.++||++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5789999999887766544433444445554554 6877543 4889999999999999999999999863
Done!