BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012909
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/449 (79%), Positives = 388/449 (86%), Gaps = 16/449 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES SWDGRYGLV+CTD+A A+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+LS ESYQSRDLEK S
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVS 301
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQ+AK YD KVQP+TL+PKQVGNMYTASLYAAFASL+H KHS L GKRV+MFSYGSG T
Sbjct: 302 QQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGST 361
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L E PFSLSNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAK+FVTS
Sbjct: 362 ATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTS 421
Query: 413 KDS--SLLSPGTCYLTEVDSMFRRFYAKK 439
K+ LL+PGT YL EVDS++RRFY KK
Sbjct: 422 KEGILDLLAPGTYYLKEVDSLYRRFYGKK 450
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/449 (79%), Positives = 387/449 (86%), Gaps = 16/449 (3%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNA YGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNAXYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLR 172
AL NCVNWVES SWDGRYGLV+CTD+A A+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 173 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 232
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 233 YFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKAS 292
YFVFHSPYNKLVQKSFARL +NDFLRNASS+DE AKEK PYS+LS ESYQSRDLEK S
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVS 301
Query: 293 QQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLT 352
QQ+AK YD KVQP+TL+PKQVGNMYTASLYAAFASL+H KHS L GKRV+MFSYGSG T
Sbjct: 302 QQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGST 361
Query: 353 ATMFSLQLQEGHRPFSLSNIVKVMDVPGKLKLRHEFPPEKFVDIMKLMEHRYGAKDFVTS 412
ATMFSL+L E PFSLSNI VMDV GKLK RHE+ PEKFV+ MKLMEHRYGAK+FVTS
Sbjct: 362 ATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKEFVTS 421
Query: 413 KDS--SLLSPGTCYLTEVDSMFRRFYAKK 439
K+ LL+PGT YL EVDS++RRFY KK
Sbjct: 422 KEGILDLLAPGTYYLKEVDSLYRRFYGKK 450
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/456 (49%), Positives = 294/456 (64%), Gaps = 22/456 (4%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PK+VGILAL++YFP V Q LE ++ V GKYTVGLGQ M FCS ED+ S+ LTVV
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVV 62
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGT
Sbjct: 63 QRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGT 122
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKL 171
A+LFN NW+ES+SWDGRY +VVC D A AVAMLIGP AP+A E L
Sbjct: 123 ASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGL 182
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--RQF 226
RG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G R F
Sbjct: 183 RGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPF 242
Query: 227 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSR 286
++ D+ Y +FH+P+ K+VQKS ARL FNDFL +S + L + L ++Y ++
Sbjct: 243 TLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNK 302
Query: 287 DLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLL-HEKHSSLEGKRVIMF 345
DL+KA + ++ ++D K + S + GNMYT+SLY ASLL H L G R+ F
Sbjct: 303 DLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAF 362
Query: 346 SYGSGLTATMFSLQLQEGHRPFS-LSNIV-KVMDVPGKLKLRHEFPPEKFVDIMKLMEHR 403
SYGSGL A+ FS ++ + P S L +V D+P +L R PE+F +IM E
Sbjct: 363 SYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQF 422
Query: 404 YGAKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
Y +F D++ L PGT YL VD RR YA++
Sbjct: 423 YHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARR 458
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/454 (48%), Positives = 294/454 (64%), Gaps = 22/454 (4%)
Query: 8 NVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTS 67
+VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +TVV +
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQN 83
Query: 68 LLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAA 127
L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNA YGGTAA
Sbjct: 84 LMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYGGTAA 143
Query: 128 LFNCVNWVESASWDGRYGLVVCTDTA--------------AVAMLIGPDAPIAFESKLRG 173
+FN VNW+ES+SWDGRY LVV D A AVA+LIGP+AP+ FE LRG
Sbjct: 144 VFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRG 203
Query: 174 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--RQFSM 228
+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG + F++
Sbjct: 204 THMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTL 263
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D + +FHSPY KLVQKS AR+ NDFL + + L + + ++Y RD+
Sbjct: 264 NDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDV 323
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHE-KHSSLEGKRVIMFSY 347
EKA + + +L+ K + S L+ Q GNMYT+S+Y + AS+L + L GKR+ +FSY
Sbjct: 324 EKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSY 383
Query: 348 GSGLTATMFSLQLQEGHRPFS-LSNIVKVM-DVPGKLKLRHEFPPEKFVDIMKLMEHRYG 405
GSGL AT++SL++ + P S L I + D+ +L R P+ F + MKL E +
Sbjct: 384 GSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHH 443
Query: 406 AKDFVTSKDSSLLSPGTCYLTEVDSMFRRFYAKK 439
+++ L GT YL VD RR YA++
Sbjct: 444 LVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 477
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 159/374 (42%), Gaps = 69/374 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + ACYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 116
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKL 171
L N V A + LVV D A AVAML+ + I +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 227
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 228 DALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA-- 261
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 262 -----------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 310
Query: 352 TATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 311 VAEFFTGELVAGYQ 324
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 159/374 (42%), Gaps = 69/374 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + ACYG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKL 171
L N V A + LVV D A AVAML+ + I +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 232
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 233 DALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA-- 266
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 267 -----------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 315
Query: 352 TATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 316 VAEFFTGELVAGYQ 329
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 69/374 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + CYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEGCYGATA 116
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKL 171
L N V A + LVV D A AVAML+ + I +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 227
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 228 DALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA-- 261
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 262 -----------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 310
Query: 352 TATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 311 VAEFFTGELVAGYQ 324
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 69/374 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 81
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + A YG TA
Sbjct: 82 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 135
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKL 171
L N V A + LVV D A AVAML+ + I +
Sbjct: 136 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 193
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 194 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 246
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 247 DALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA-- 280
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 281 -----------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 329
Query: 352 TATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 330 VAEFFTGELVAGYQ 343
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 69/374 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + A YG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESKL 171
L N V A + LVV D A AVAML+ + I +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 172 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 231
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 232
Query: 232 DYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKA 291
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 233 DALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA-- 266
Query: 292 SQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGL 351
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 267 -----------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGA 315
Query: 352 TATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 316 VAEFFTGELVAGYQ 329
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 159/375 (42%), Gaps = 70/375 (18%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQI--FEKYGNTDIEGVDSTNAC-YGGT 125
L K D I + VG+E+ ID+SK+ L ++ + + + + AC YG T
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACXYGAT 116
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFESK 170
A L N V A + LVV D A AVAML+ + I +
Sbjct: 117 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKE 174
Query: 171 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 230
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--D 227
Query: 231 VDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEK 290
D FH PY K+ +K+ LA S ++ E Q R L
Sbjct: 228 YDALAFHIPYTKMGKKAL----------------------LAKISDQTEAE--QERILA- 262
Query: 291 ASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSG 350
+ + S + ++VGN+YT SLY SLL + G ++ +FSYGSG
Sbjct: 263 ------------RYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSG 310
Query: 351 LTATMFSLQLQEGHR 365
A F+ +L G++
Sbjct: 311 AVAEFFTGELVAGYQ 325
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 151/377 (40%), Gaps = 76/377 (20%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + ACY
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEACYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFE 168
T A+ +++ A+ LV+ TDTA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D FH P+ K+ +K+ + N DE +E+L S D Y
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERLR--SGYEDAVDYN---- 270
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 348
+ VGN+YT SL L E G+ + +FSYG
Sbjct: 271 -----------------------RYVGNIYTGSL-YLSLISLLENRDLQAGETIGLFSYG 306
Query: 349 SGLTATMFSLQLQEGHR 365
SG +S L EG++
Sbjct: 307 SGSVGEFYSATLVEGYK 323
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 75/377 (19%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFE 168
T A+ +++ A+ LV+ TDTA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D FH P+ K+ +K+ + N DE +E+L S D Y
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERLR--SGYEDAVDYN---- 270
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 348
+ VGN+YT SL L E G+ + +FSYG
Sbjct: 271 -----------------------RYVGNIYTGSL-YLSLISLLENRDLQAGETIGLFSYG 306
Query: 349 SGLTATMFSLQLQEGHR 365
SG +S L EG++
Sbjct: 307 SGSVGEFYSATLVEGYK 323
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 75/377 (19%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFE 168
T A+ +++ A+ LV+ TDTA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D FH P+ K+ +K+ + N DE +E+L S D Y
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERLR--SGYEDAVDYN---- 270
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 348
+ VGN+YT SL L E G+ + +FSYG
Sbjct: 271 -----------------------RYVGNIYTGSL-YLSLISLLENRDLQAGETIGLFSYG 306
Query: 349 SGLTATMFSLQLQEGHR 365
SG +S L EG++
Sbjct: 307 SGSVGEFYSATLVEGYK 323
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 150/377 (39%), Gaps = 76/377 (20%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + A Y
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEAXYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFE 168
T A+ +++ A+ LV+ TDTA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D FH P+ K+ +K+ + N DE +E+L S D Y
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERLR--SGYEDAVDYN---- 270
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 348
+ VGN+YT SL L E G+ + +FSYG
Sbjct: 271 -----------------------RYVGNIYTGSL-YLSLISLLENRDLQAGETIGLFSYG 306
Query: 349 SGLTATMFSLQLQEGHR 365
SG +S L EG++
Sbjct: 307 SGSVGEFYSATLVEGYK 323
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 150/377 (39%), Gaps = 76/377 (20%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + A Y
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEAXYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDTA---------------AVAMLIGPDAPIAFE 168
T A+ +++ A+ LV+ TDTA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 169 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 228
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 229 LDVDYFVFHSPYNKLVQKSFARLFFNDFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDL 288
D FH P+ K+ +K+ + N DE +E+L S D Y
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERLR--SGYEDAVDYN---- 270
Query: 289 EKASQQVAKQLYDLKVQPSTLIPKQVGNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYG 348
+ VGN+YT SL L E G+ + +FSYG
Sbjct: 271 -----------------------RYVGNIYTGSL-YLSLISLLENRDLQAGETIGLFSYG 306
Query: 349 SGLTATMFSLQLQEGHR 365
SG +S L EG++
Sbjct: 307 SGSVVEFYSATLVEGYK 323
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 70/346 (20%)
Query: 38 KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIK 97
K++ GL + ++ +DV++++ +L D +I + + +E+ +D+SK+
Sbjct: 66 KFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQSKAGA 123
Query: 98 TFL-----MQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVES---------ASWDGR 143
++ +Q F + + ACY TAAL VE AS +
Sbjct: 124 VYVHSLLGIQPFAR-------SFEMKEACYSATAALNYAKLHVEKHPDTRVLVLASDIAK 176
Query: 144 YGLVVCTDT----AAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLS 199
YG+ ++ ++AML+ D I + DF++PN + P V+G S
Sbjct: 177 YGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVNGMYS 235
Query: 200 QTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRN 259
YL L + + + ++F+ S+ D F FH P+ KL K F ++
Sbjct: 236 TKQYLDMLKTTWAEYQKRFD------VSLTDFAAFCFHLPFPKLALKGFNKIM------- 282
Query: 260 ASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQVGNMYT 319
+K P SD++ + E S L KQ+GN+YT
Sbjct: 283 ---------DKQVP----SDLQEKLKVNFE----------------ASILYSKQIGNIYT 313
Query: 320 ASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHR 365
SL+ SLL + + G ++ +FSYGSG A +F+ L +G +
Sbjct: 314 GSLFLGLLSLLENSQNLVAGDKIALFSYGSGAVAEIFTGTLVKGFK 359
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 69/351 (19%)
Query: 33 GVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK 92
G K++ GL + ++ +DV++++ +L D +I + + +E+ +D+
Sbjct: 27 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 84
Query: 93 SKSIKTFL-----MQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVES---------A 138
SK+ ++ +Q F + E ++ CY TAAL VE A
Sbjct: 85 SKAGAVYVHSLLGIQPFAR----SFEMKEAX--CYSATAALNYAKLHVEKHPDTRVLVLA 138
Query: 139 SWDGRYGLVVCTDT----AAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVV 194
S +YG+ ++ ++AML+ D I + DF++PN + P V
Sbjct: 139 SDIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYV 197
Query: 195 DGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLFFN 254
+G S YL L + + + ++F+ S+ D F FH P+ KL K F ++
Sbjct: 198 NGMYSTKQYLDMLKTTWAEYQKRFD------VSLTDFAAFCFHLPFPKLALKGFNKIM-- 249
Query: 255 DFLRNASSVDEIAKEKLAPYSTLSDVESYQSRDLEKASQQVAKQLYDLKVQPSTLIPKQV 314
+K P SD++ + E S L KQ+
Sbjct: 250 --------------DKQVP----SDLQEKLKVNFE----------------ASILYSKQI 275
Query: 315 GNMYTASLYAAFASLLHEKHSSLEGKRVIMFSYGSGLTATMFSLQLQEGHR 365
GN+YT SL+ SLL + + G ++ +FSYGSG A +F+ L +G +
Sbjct: 276 GNIYTGSLFLGLLSLLENSQNLVAGDKIALFSYGSGAVAEIFTGTLVKGFK 326
>pdb|2QIP|A Chain A, Crystal Structure Of A Protein Of Unknown Function Vpa0982
From Vibrio Parahaemolyticus Rimd 2210633
Length = 165
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 24 LQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMS-----LTVVTSLLEKYKIDPTQ 78
L+ ++ DG +KG + VG+ D + +V+ VI +S +V + ++Y T
Sbjct: 79 LKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTV 138
Query: 79 IGRLEVGSETVID 91
G + S+T+ID
Sbjct: 139 YGVPRLTSQTLID 151
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHJ|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 244 VQKSFARLFFNDFLRNASSVDEIAKEKLAPYS 275
V+++ +RL+FN +++A V EIA+E+ ++
Sbjct: 243 VRRAVSRLYFNGEIQSAEKVREIARERFGRFA 274
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHN|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 244 VQKSFARLFFNDFLRNASSVDEIAKEKLAPYS 275
V+++ +RL+FN +++A V EIA+E+ ++
Sbjct: 243 VRRAVSRLYFNGEIQSAEKVREIARERFGRFA 274
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 172 RGSHMSHAYDFYKPNLASEYPVV 194
RGSHM++A F+K N +++P V
Sbjct: 17 RGSHMANAITFFKLNTGAKFPSV 39
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 334 HSSLEGKRVIMFSY---GSGLTATMFSLQLQEGHRPFSLSNIVK 374
SSL+G V +F+Y GSG T TM L +G P +LS+I K
Sbjct: 79 QSSLDGYNVCIFAYGQTGSGKTYTM--LNAGDGMIPMTLSHIFK 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,022,239
Number of Sequences: 62578
Number of extensions: 512562
Number of successful extensions: 1311
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 37
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)