Query 012910
Match_columns 453
No_of_seqs 379 out of 1321
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.2E-34 1.1E-38 279.4 21.8 384 10-432 24-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.7E-33 9.1E-38 271.8 20.3 363 9-424 21-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 100.0 6.2E-29 2.1E-33 244.8 15.8 363 34-436 35-476 (491)
4 4gc0_A D-xylose-proton symport 100.0 1.1E-28 3.7E-33 243.0 10.3 402 13-445 11-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 7.4E-29 2.5E-33 235.5 7.8 320 29-397 16-354 (375)
6 2cfq_A Lactose permease; trans 99.9 1.8E-25 6E-30 215.2 14.0 356 33-434 28-402 (417)
7 2xut_A Proton/peptide symporte 99.9 1.3E-24 4.4E-29 215.7 14.9 375 34-435 34-506 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.5E-14 5.2E-19 140.2 12.0 178 237-433 26-208 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.5 2.1E-14 7.1E-19 140.9 12.5 176 239-433 13-198 (491)
10 3o7q_A L-fucose-proton symport 99.5 9E-14 3.1E-18 134.2 11.3 182 242-430 29-228 (438)
11 2gfp_A EMRD, multidrug resista 99.5 1.4E-13 4.6E-18 130.2 9.8 164 244-426 5-169 (375)
12 2xut_A Proton/peptide symporte 99.4 1.6E-12 5.4E-17 128.6 13.8 172 239-429 12-196 (524)
13 4gc0_A D-xylose-proton symport 99.1 2.3E-10 7.7E-15 112.1 11.9 115 273-394 54-187 (491)
14 2cfq_A Lactose permease; trans 99.0 8.5E-11 2.9E-15 112.6 1.1 170 235-424 3-180 (417)
15 2g9p_A Antimicrobial peptide l 77.1 0.69 2.4E-05 22.4 0.5 15 84-98 2-16 (26)
16 2knc_B Integrin beta-3; transm 59.4 38 0.0013 22.9 6.5 24 408-431 9-32 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.2e-34 Score=279.37 Aligned_cols=384 Identities=14% Similarity=0.067 Sum_probs=279.4
Q ss_pred cccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhh
Q 012910 10 NTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQR 87 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~ 87 (453)
+++|..+....+..+..+. .+.++.+.|.+.+|+ .|..+.+++.+.+.++... ++++|+++||+|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------ 90 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------------ 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------------
Confidence 3456666665555555444 566788889999999 9999999888888777775 599999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheec
Q 012910 88 LTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMK 166 (453)
Q Consensus 88 ~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~ 166 (453)
||+++.++.++.+++.+++++.... . ++++.+++.|+++|++.+...+...+++.|++| ++|++++++..
T Consensus 91 ------~r~~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 91 ------PRVFLPAGLILAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred ------chHHHHHHHHHHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 9999999999999999997661000 2 688999999999999999999999999999997 88999999987
Q ss_pred ccCCCCcc--c------ccccc-cCcccchhhhhhhhhc-----ccccCCCCcccCCCCCCCCCCC-Cc-CCcCCCCCCc
Q 012910 167 GSDSDRTS--E------TSFCE-EDELTDDPHEMHAEKM-----HVRQDPVGYHRLPSEPDVGTDT-ND-ATTSLWGGDL 230 (453)
Q Consensus 167 ~~~~~~~~--~------~~~~~-w~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 230 (453)
.+.+++.. + ....+ ||+.|........+.. .+++.+++...++.++.++.++ +. +.+++.....
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 241 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccc
Confidence 65544211 1 12256 9999987654332211 1222222111111111000000 00 0000011111
Q ss_pred c--HHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhcccc
Q 012910 231 D--LLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEW 307 (453)
Q Consensus 231 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~ 307 (453)
+ .++.+++|.++...+..++.......+..++|.++++ .|+++.+++...+...++.++++++.|++.||+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---- 317 (451)
T 1pw4_A 242 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---- 317 (451)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----
T ss_pred cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 1 4677889999999998888888888888899999987 79999999999999999999999999999999811
Q ss_pred CchhHHHHHHHHHH-HHHHHHHhc---chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhh-hhh
Q 012910 308 ARPLFMVITLAAMS-IGHLIIASG---LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPV-GSY 382 (453)
Q Consensus 308 ~r~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ 382 (453)
+|++.+..+..+.. ++.+++... +.+...+..++.|++.+...+....++.|.+|+++++++.|+.+....+ |..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 318 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 22334444444433 555555422 4445566677888888888888889999999999999999999999999 885
Q ss_pred hhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 012910 383 IFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLF 432 (453)
Q Consensus 383 i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 432 (453)
++|.+.|.+.|..+ |+..|++.+++.+++.++.+...
T Consensus 398 -~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 -AASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -HHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999877 79999999888888876665544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.7e-33 Score=271.85 Aligned_cols=363 Identities=12% Similarity=0.016 Sum_probs=270.7
Q ss_pred ccccHHHHHHHHHHHHhhcC-cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchh
Q 012910 9 LNTRWVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQ 86 (453)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g 86 (453)
++++|..+....+..+..+. ...++++.|.+++++|+|..+.+++.+.+.++..+ ++++|+++||+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g----------- 89 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS----------- 89 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC-----------
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-----------
Confidence 34455555555555555554 46778889999999999999999888888888775 599999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhee
Q 012910 87 RLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIM 165 (453)
Q Consensus 87 ~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~ 165 (453)
||++++++.++.+++.+++... ++. ++++.+++.|+++|++.+...+...+++.|++| ++|++++++.
T Consensus 90 -------~r~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 158 (438)
T 3o7q_A 90 -------YKAGIITGLFLYALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA 158 (438)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHH
Confidence 9999999999999999986321 333 599999999999999999999999999999997 8999999988
Q ss_pred cccCCCCc--------ccc-cccc-------------------------cCcccchhhhhhhhhcc---cccCCCCcccC
Q 012910 166 KGSDSDRT--------SET-SFCE-------------------------EDELTDDPHEMHAEKMH---VRQDPVGYHRL 208 (453)
Q Consensus 166 ~~~~~~~~--------~~~-~~~~-------------------------w~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 208 (453)
..+.+++. ... ...+ ||+.|........+... ....|+.+.++
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 76655421 111 1112 78877655433322221 11112111100
Q ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHh-hhhc-CCChhhhhHHHHHHHHH
Q 012910 209 PSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQI-GGSL-GYSSFETSSLISLWSIW 286 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~i~ 286 (453)
+++ +++.+...++++++++|.++...+..++..........++|.+ .++. |+++.+++...+...++
T Consensus 239 --~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 307 (438)
T 3o7q_A 239 --HSD---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC 307 (438)
T ss_dssp --CCC---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred --ccc---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH
Confidence 000 0111223466788999999999998888888777888889999 8776 99999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccc
Q 012910 287 NFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIASGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQM 366 (453)
Q Consensus 287 ~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~ 366 (453)
..+++++.|+++||+ +|++++..+.++..++.+++...+.....+..++.|++.+..++....+..|.+|++ +
T Consensus 308 ~~~~~~~~g~l~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 380 (438)
T 3o7q_A 308 FFIGRFTGTWLISRF------APHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-T 380 (438)
T ss_dssp HHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-H
T ss_pred HHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c
Confidence 999999999999999 667777777777777776666444334455567888999988999999989999955 7
Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 367 GTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 367 g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
+.+.++.. ...+|+. ++|.+.|.+.|..|+ |+..|++.+++.++.
T Consensus 381 ~~~~~~~~-~~~~g~~-~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGG-IVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHH-HTTHHHH-HHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHH-HHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence 88888777 5567775 799999999999875 677887765544443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=6.2e-29 Score=244.78 Aligned_cols=363 Identities=10% Similarity=0.005 Sum_probs=237.0
Q ss_pred ccchhHHhh-----cCCCccchhHHHHHHHHhhhh-cchhhhhhhc-cCCCCCCCCcchhhhhhccCchHHHHHHHHHHH
Q 012910 34 IYSPALKTT-----QHYDQTTLDTVSVFKDIGANT-GTLSGVLYTY-STSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCF 106 (453)
Q Consensus 34 ~~~~~~~~~-----~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr-~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~ 106 (453)
...+.++++ +|+|..+.+++.+.+.++..+ ++++|+++|| +| ||+++.++.++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g------------------~r~~~~~~~~~~~ 96 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG------------------ARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------------chHHHHHHHHHHH
Confidence 333445555 999999999887888777775 5999999999 89 9999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CC--ccchhheecccCCCCc--cc------
Q 012910 107 AGYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TY--SGTAVGIMKGSDSDRT--SE------ 175 (453)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~--rg~~~g~~~~~~~~~~--~~------ 175 (453)
++.+++ +++ ++++.+++.|+++|++.+...+...+++.|++| ++ |+.+.++...+.+++. .|
T Consensus 97 ~~~~~~-----~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 97 LGHIVL-----ALP--FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHH-----HSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHh--hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 999884 444 589999999999999999999999999999997 67 6677777655443321 11
Q ss_pred ccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCc------------------------C-----
Q 012910 176 TSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATT------------------------S----- 224 (453)
Q Consensus 176 ~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~----- 224 (453)
....+|++.|........+... ....++...++..+++++.+.++..+ .
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 249 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAY 249 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 1226899888776333221111 11111111111001110000000000 0
Q ss_pred -------------------CCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHH
Q 012910 225 -------------------LWGGDLDLLQAICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWS 284 (453)
Q Consensus 225 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 284 (453)
.++...+..+..+....+..++..++...........++.+.++ .+.+..+.+...+...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (491)
T 4aps_A 250 INLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNP 329 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccch
Confidence 00000000111112223444444444445555566667777775 4777678889999999
Q ss_pred HHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh----------cchhHHHHHHHHHHHhhhhhhhhhH
Q 012910 285 IWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIAS----------GLPGALYAGSILVGVCYGSQWSLMP 354 (453)
Q Consensus 285 i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~l~g~~~g~~~~~~~ 354 (453)
+...++.++.|++.||+++|+. .+...+..+.++..++++++.. .+.+...+..++.|++.+...+...
T Consensus 330 ~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 408 (491)
T 4aps_A 330 LFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999976532 1233344556666666555432 1344566677888999888889999
Q ss_pred HHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 012910 355 TIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 355 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~ 434 (453)
.++.|.+|+++++++.|+.+....+|.. ++|.+.+.+.|.. +...|...+++.+++.++.+...++
T Consensus 409 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNAQLVTLYNAKS-------------EVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHHHHGGGGGGSS-------------TTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 6888888877652 5677888887777777666655544
Q ss_pred hh
Q 012910 435 TK 436 (453)
Q Consensus 435 ~~ 436 (453)
.+
T Consensus 475 ~~ 476 (491)
T 4aps_A 475 IQ 476 (491)
T ss_dssp --
T ss_pred HH
Confidence 43
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=1.1e-28 Score=243.01 Aligned_cols=402 Identities=14% Similarity=0.005 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHhhcC-cccccccchhHHhhcCC--------CccchhHHHHHHHHhhhhc-chhhhhhhccCCCCCCCC
Q 012910 13 WVSTVASIWIQCTSGS-LYTFSIYSPALKTTQHY--------DQTTLDTVSVFKDIGANTG-TLSGVLYTYSTSDHSSHH 82 (453)
Q Consensus 13 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~--------s~~~~~~i~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~ 82 (453)
|.+.+.+.+..+..|. ...++...|.++++++. +..+.+++.+.+.+|..++ +++|+++||+|
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G------- 83 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG------- 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3344444444555555 34456677888887743 2345567778888888875 89999999999
Q ss_pred cchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHHHhhhhhHhhhhhHhHh
Q 012910 83 PRQQRLTRLLGPWVVLLVGAIQCFAGYFLMWASVVGLI-----------PRPPVPVMCLFMLFAAHGMTFFNTADVVTSV 151 (453)
Q Consensus 83 p~~g~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~ 151 (453)
||+++.++.+++.++.++++++..+.. ..++++.++++|+++|+|.|...+.+..++.
T Consensus 84 -----------Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 84 -----------RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999654211100 0158999999999999999999999999999
Q ss_pred hhcC-CCccchhheecccCCCCcc-------------cc---cccccCcccchhhhhhhhhcc-cccCCCCc---ccCCC
Q 012910 152 RNFP-TYSGTAVGIMKGSDSDRTS-------------ET---SFCEEDELTDDPHEMHAEKMH-VRQDPVGY---HRLPS 210 (453)
Q Consensus 152 ~~~p-~~rg~~~g~~~~~~~~~~~-------------~~---~~~~w~~~~~~~~~~~~~~~~-l~~~~~~~---~~~~~ 210 (453)
|+.| ++|++..++...+...+.. .. ....||..+............ ....|+.. ..+..
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9997 8999998887655433110 00 112344333332222111111 12222211 11110
Q ss_pred CCCCCCC-------CC--cC---C---cCCCCCCccHHHHhhhhHHHHHHHHHHh-hhcchhhecccHHHhhhhcCCChh
Q 012910 211 EPDVGTD-------TN--DA---T---TSLWGGDLDLLQAICTLEFWILSFAMAC-GMGSGLATVNNISQIGGSLGYSSF 274 (453)
Q Consensus 211 ~~~~~~~-------~~--~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~ 274 (453)
+++.+.. .. ++ . ..+..+.......++.+..........+ .......+..+.+.+.++.+.+..
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD 312 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence 0000000 00 00 0 0000000111122233333333333333 333334455566777778888888
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH----hcch-hHHHHHHHHHHHhhh-h
Q 012910 275 ETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA----SGLP-GALYAGSILVGVCYG-S 348 (453)
Q Consensus 275 ~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~-~~~~~~~~l~g~~~g-~ 348 (453)
+......+.++...++.++.+++.||+ +||+.+..+.....++.+.+. .... ....+...+...+++ .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~------Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKF------GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh------cCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 888888889999999999999999999 667777777666666655543 1122 222222222222222 2
Q ss_pred hhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Q 012910 349 QWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAA 428 (453)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~ 428 (453)
..+..+.+.+|.+|++.|+++.|+.+..+.++++ +++.+...+.+..... ....+...|++.+++++++.++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~~------~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWLV------AHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------hhhhhhHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999988888886 5666666555432100 00013567888888888888888
Q ss_pred HHHhhhhhhhhHHHHHH
Q 012910 429 FGLFLRTKRFYNEVILR 445 (453)
Q Consensus 429 ~~~~~~~~~~~~~~~~~ 445 (453)
+++.+|+|.+..|+.++
T Consensus 460 ~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHCCCCTTCCHHHHGG
T ss_pred HheecCCCCCCHHHHHH
Confidence 88888888877776654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=7.4e-29 Score=235.54 Aligned_cols=320 Identities=13% Similarity=-0.001 Sum_probs=241.3
Q ss_pred cccccccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHH
Q 012910 29 LYTFSIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFA 107 (453)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~ 107 (453)
...+.+..|.+.+++|.|..+.+++.+...++... +++.|++.||+| ||+++.++.++.++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g------------------~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG------------------RRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC------------------CCCCCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------CchhHHHHHHHHHH
Confidence 45566778899999999999999887777777765 599999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhheecccCCCCc--------ccccc
Q 012910 108 GYFLMWASVVGLIPRPPVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGIMKGSDSDRT--------SETSF 178 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~~~~~~~~~~--------~~~~~ 178 (453)
+.++++++ ++++.+++.|+++|++.+...+...+++.|++| ++|++++++...+.+++. .....
T Consensus 78 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 78 ATLVAVTT-------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHh-------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99987665 589999999999999999999999999999996 899999999876655421 11122
Q ss_pred cccCcccchhhhhhhhhcc--cccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchh
Q 012910 179 CEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGL 256 (453)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (453)
.+||+.|........+... ....|+++++ +++ +++...+.++.+|+|+++...+..++......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPV----DAP----------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA 216 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT----TCC----------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCC----Ccc----------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 5788888765444332222 1122211111 000 00122345788899999998888888877777
Q ss_pred hecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHH-HHHHHH--HHH---h
Q 012910 257 ATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAA-MSIGHL--IIA---S 329 (453)
Q Consensus 257 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~---~ 329 (453)
.+..+.|.+.++ .|.++.+++...+...++..+++++.+++.||. +++. ..+... ...+.. ... .
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~------~~~~--~~~~~~~~~~~~~~~~~~~~~~ 288 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF------STLM--WQSVICCLLAGLLMWIPDWFGV 288 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH------HHHH--HHHHHHHHHTSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHHHHHHHHHHHHHHHHhhhcc
Confidence 777888888876 799999999999999999999999999999999 4422 222222 222221 111 1
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccC
Q 012910 330 GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREA 397 (453)
Q Consensus 330 ~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g 397 (453)
++.+...+..++.|++.+...+....++.|.+| ++++++.|+.+....+|.. ++|.+.|.+.+..+
T Consensus 289 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcCCc
Confidence 233445566778899999999999999999998 8999999999999999996 68888999887654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=1.8e-25 Score=215.24 Aligned_cols=356 Identities=10% Similarity=-0.056 Sum_probs=219.8
Q ss_pred cccchhHHhhcCCCccchhHHHHHHHHhhhh-cchhhhhhhccCCCCCCCCcchhhhhhccCchHHHHHHHHHHHHHHHH
Q 012910 33 SIYSPALKTTQHYDQTTLDTVSVFKDIGANT-GTLSGVLYTYSTSDHSSHHPRQQRLTRLLGPWVVLLVGAIQCFAGYFL 111 (453)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~~~~~~~ 111 (453)
+.....+++++|+|..+.+++.+...++... ++++|+++||+| ||++++++..+++++...
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G------------------rr~~l~~~~~~~~~~~~~ 89 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG------------------LRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST------------------TCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHHHHHHHH
Confidence 3343446778999999999877777777765 599999999999 999999888877653321
Q ss_pred HHHHHhcCCCCCCH-HHHHHHHHHHHhhhhhHhhhhhHhHhhhcC---CCccchhheecccCCCCc--ccc-----cccc
Q 012910 112 MWASVVGLIPRPPV-PVMCLFMLFAAHGMTFFNTADVVTSVRNFP---TYSGTAVGIMKGSDSDRT--SET-----SFCE 180 (453)
Q Consensus 112 ~~~~~~~~~~~~~~-~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p---~~rg~~~g~~~~~~~~~~--~~~-----~~~~ 180 (453)
+.. ..+. +.. ..++..+++.|++.+..++.....+.++.+ ++++.+.|.......++. .|. ...+
T Consensus 90 ~~~--~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~ 165 (417)
T 2cfq_A 90 FFI--FIFG--PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165 (417)
T ss_dssp HHH--HTHH--HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 110 0000 000 012345666666666655555555555543 456766666654444421 111 1246
Q ss_pred cCcccchhhhhhhhhccc-ccCCCCcccCCCCCCCCCCCCcCCcCCCCCCccHHHHhhhhHHHHHHHHHHhhhcchhhec
Q 012910 181 EDELTDDPHEMHAEKMHV-RQDPVGYHRLPSEPDVGTDTNDATTSLWGGDLDLLQAICTLEFWILSFAMACGMGSGLATV 259 (453)
Q Consensus 181 w~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (453)
|+..|............. ...+++.+++. ++++.++ + ++++....+.++.+++|+++...+..+........+.
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDAPSSA--TVANAVG--A-NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCCSCSS--CSSSSSS--S-CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCccccccc--ccccccc--c-ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH
Confidence 777776543332221111 11111110000 0000000 0 0011111245678899998877665544443333444
Q ss_pred ccHHHhhhhc-C---CChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hcchhH
Q 012910 260 NNISQIGGSL-G---YSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-SGLPGA 334 (453)
Q Consensus 260 ~~~~~~~~~~-g---~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~ 334 (453)
.++|.++++. + .+....+...++..++..++.++.|+++||+ +|++++..+..+.+++.+++. .++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI------GGKNALLLAGTIMSVRIIGSSFATSALE 314 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 5577776543 2 2344557777888889999999999999999 666677777777766665555 334444
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhh-hhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHH
Q 012910 335 LYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTI-TIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLS 413 (453)
Q Consensus 335 ~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 413 (453)
+.+...+.+++.+...+....++.|.+|++.++++.|.. +....+|+. ++|.+.|.+.|..+ |...
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~gp~l~G~l~~~~g------------~~~~ 381 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYESIG------------FQGA 381 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HHTHHHHTHHHHSH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-HhhhhHHHHHHhcC------------cHHH
Confidence 455555667766666666778999999999999999995 788889985 69999999998766 7888
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 012910 414 FFIMGSATLCGSLAAFGLFLR 434 (453)
Q Consensus 414 f~~~~~~~~~~~i~~~~~~~~ 434 (453)
|.+.+++.+++.++.+...++
T Consensus 382 f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 382 YLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 988888888877655544433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=1.3e-24 Score=215.75 Aligned_cols=375 Identities=11% Similarity=-0.064 Sum_probs=209.3
Q ss_pred ccchhHHhhcC------CCccchhHHHHHHHHhhhh-cchhhhhhhcc-CCCCCCCCcchhhhhhccCchHHHHHHHHHH
Q 012910 34 IYSPALKTTQH------YDQTTLDTVSVFKDIGANT-GTLSGVLYTYS-TSDHSSHHPRQQRLTRLLGPWVVLLVGAIQC 105 (453)
Q Consensus 34 ~~~~~~~~~~~------~s~~~~~~i~~~~~~~~~~-~~~~g~l~dr~-g~~~~~~~p~~g~~~~~~g~r~~~~~~~~~~ 105 (453)
.+.+.+++++| +|..+.+++.+.+.++..+ .+++|+++||+ | ||+++.++.++.
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------------------~r~~~~~~~~~~ 95 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------------------KYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------chHHHHHHHHHH
Confidence 34455788899 9999999887777777775 59999999999 9 999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhhhhhHhhhhhHhHhhhcC-CCccchhhe---ecccCCCC----c---
Q 012910 106 FAGYFLMWASVVGLIPRP-PVPVMCLFMLFAAHGMTFFNTADVVTSVRNFP-TYSGTAVGI---MKGSDSDR----T--- 173 (453)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~g~~~~~~~~~~~~~~~~p-~~rg~~~g~---~~~~~~~~----~--- 173 (453)
+++.++++++ + +++.+++.|+++|++.+...+...+++.|++| ++|+++.+. .....+++ .
T Consensus 96 ~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 96 CVGHAFLAIF-------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHT-------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHh-------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886554 5 89999999999999999999999999999997 788876665 43333221 1
Q ss_pred -ccccccccCcccchhhhhhhhhcc--cccCCCCcccCCCCCC-CCCCCC-cC-CcCCCCC-C-----------------
Q 012910 174 -SETSFCEEDELTDDPHEMHAEKMH--VRQDPVGYHRLPSEPD-VGTDTN-DA-TTSLWGG-D----------------- 229 (453)
Q Consensus 174 -~~~~~~~w~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~-~----------------- 229 (453)
......+|++.|........+... ....++...+++++++ .+..+. .. .+++..+ +
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYA 248 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhh
Confidence 111226788888765443222111 1111111100000000 000000 00 0000000 0
Q ss_pred --------------------------ccH--H----------HHhhhhHHHHHHHHHHh---hhcchhhecccHHHhhhh
Q 012910 230 --------------------------LDL--L----------QAICTLEFWILSFAMAC---GMGSGLATVNNISQIGGS 268 (453)
Q Consensus 230 --------------------------~~~--~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (453)
.++ . +..+.++.+........ ...........++.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 249 LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 000 0 00011111111111111 111111111222223233
Q ss_pred cCCCh-hhhhHHHHHHHHHHHHHhhhhhhhh-hhhhhcc-ccCchhHHHHHHHHHHHHHHHHHh----------cchhHH
Q 012910 269 LGYSS-FETSSLISLWSIWNFLGRFGAGYVS-DYFLHVK-EWARPLFMVITLAAMSIGHLIIAS----------GLPGAL 335 (453)
Q Consensus 269 ~g~s~-~~~~~~~~~~~i~~~ig~~~~G~l~-Dr~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~----------~~~~~~ 335 (453)
.+.+. ...+.......++..++.++.+++. |+..++. +.+++..+..+.++.+++++++.. .+.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (524)
T 2xut_A 329 MVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQ 408 (524)
T ss_dssp SCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHH
T ss_pred cCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 33221 1345555555566666777777664 3222221 012334555666666666665542 133455
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCCccccccchHHHHH
Q 012910 336 YAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGNKCTGTHCFMLSFF 415 (453)
Q Consensus 336 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~ 415 (453)
.+..++.|++.+...+....++.|.+|++++|++.|+.++...+|+. ++|.+.|.+.+..+...... .........|+
T Consensus 409 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ 486 (524)
T 2xut_A 409 ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL-WVLLANVSVKSPTVTEQIVQ-TGMSVTAFQMF 486 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH-HHHHHHHHTTSCHHHHHHHH-HHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhccccccccccc-ccccccccHHH
Confidence 66778889999999999999999999999999999999999999996 69999999887532000000 00000123366
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 012910 416 IMGSATLCGSLAAFGLFLRT 435 (453)
Q Consensus 416 ~~~~~~~~~~i~~~~~~~~~ 435 (453)
+.+++.+++.++.++..++.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 487 FFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777776665555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=1.5e-14 Score=140.19 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=146.0
Q ss_pred hhhHHHHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHH
Q 012910 237 CTLEFWILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVIT 316 (453)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~ 316 (453)
+.+.++..++..++.......+...+|.+.+++ .+..+.+++.+...++..++.++.|+++||+ +||+++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------g~r~~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS------NPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc------CchHHHHHH
Confidence 344555566666666555555666788888899 9999999999999999999999999999999 777888888
Q ss_pred HHHHHHHHHHHHh-----cchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhh
Q 012910 317 LAAMSIGHLIIAS-----GLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGY 391 (453)
Q Consensus 317 ~~~~~i~~~~~~~-----~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~ 391 (453)
.++.+++.++... ++.+.+++..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|.. ++|.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8888888777653 45567778889999999999999999999999999999999999999999995 79988888
Q ss_pred heeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 392 IYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 392 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
+.+..++ |+..|++.+++.++..++.++..+
T Consensus 178 l~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 178 GMAWFND-----------WHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8876654 789999988887776655544443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.55 E-value=2.1e-14 Score=140.93 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhhh------cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhh-hhhccccCchh
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGGS------LGYSSFETSSLISLWSIWNFLGRFGAGYVSDY-FLHVKEWARPL 311 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr-~~~~~~~~r~~ 311 (453)
+.++.+++..++.....+....+++.++++ +|.+..+.++..+...++..+++++.|+++|| + +||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~------g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII------GARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------CHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cchH
Confidence 356666666666666666666777777764 79999999999999999999999999999999 8 7788
Q ss_pred HHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhcccc--ccchhhhhhhhhhhhhhhhhhhh
Q 012910 312 FMVITLAAMSIGHLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQ--MGTIFNTITIANPVGSYIFSVRV 388 (453)
Q Consensus 312 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~i~g~~~ 388 (453)
++..+.++..++.++.. .++.+.+.+..++.|++.+...+...+++.|.+|+++ |+.+.++.+....+|.. ++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 88888888888888777 4566677888899999999999999999999999988 67788888899999995 79999
Q ss_pred hhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHhh
Q 012910 389 VGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAFGLFL 433 (453)
Q Consensus 389 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 433 (453)
.+.+.+..+ |+..|++.++..+++.++.++..+
T Consensus 166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998776 899999988877777665554433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=9e-14 Score=134.21 Aligned_cols=182 Identities=10% Similarity=0.023 Sum_probs=138.4
Q ss_pred HHHHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHH
Q 012910 242 WILSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMS 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~ 321 (453)
..+.+..++...........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+ +||+++..+.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~------g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL------SYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh------cchHHHHHHHHHHH
Confidence 334444444444444555567888889999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHH---H-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhe-ecc
Q 012910 322 IGHLII---A-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIY-DRE 396 (453)
Q Consensus 322 i~~~~~---~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~-~~~ 396 (453)
++.++. . .++.+.+++..++.|++.+...+....++.|.+|+++|+.+.++.+....+|.. ++|.+.+.+. +..
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHHTSS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 888776 4 456677788889999999999999999999999999999999999999999996 7998888887 443
Q ss_pred CCCCCCc-------------cccccchHHHHHHHHHHHHHHHHHHHH
Q 012910 397 ASGEGNK-------------CTGTHCFMLSFFIMGSATLCGSLAAFG 430 (453)
Q Consensus 397 g~~~~~~-------------~~~~~~~~~~f~~~~~~~~~~~i~~~~ 430 (453)
+...+.. ....++|++.|++.+++.++..++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2100000 000011678887777666665544433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.46 E-value=1.4e-13 Score=130.16 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=136.3
Q ss_pred HHHHHHhhhcchhhecccHHHhhhhcCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHH
Q 012910 244 LSFAMACGMGSGLATVNNISQIGGSLGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIG 323 (453)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~ 323 (453)
+++..++.......+...+|.+.+++|.|+.+.++..+...++..++.++.|+++||+ +||+++..+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~------g~r~~~~~~~~~~~~~ 78 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV------GRRPVILVGMSIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS------CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhHHHHHHHHHHH
Confidence 3444455555555556667888889999999999999999999999999999999999 6666777777777777
Q ss_pred HHHHH-hcchhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhheeccCCCCCC
Q 012910 324 HLIIA-SGLPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYDREASGEGN 402 (453)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~~~g~~~~~ 402 (453)
.++.. .++.+.+.+..++.|++.+...+....++.|.+|+++|+++.+..+....+|.. ++|.+.+.+.+..+
T Consensus 79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~----- 152 (375)
T 2gfp_A 79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN----- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc-----
Confidence 77665 455667777888999999999999999999999999999999999999999995 79999999988766
Q ss_pred ccccccchHHHHHHHHHHHHHHHH
Q 012910 403 KCTGTHCFMLSFFIMGSATLCGSL 426 (453)
Q Consensus 403 ~~~~~~~~~~~f~~~~~~~~~~~i 426 (453)
|+..|++.+++.++..+
T Consensus 153 -------~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 153 -------WRACYLFLLVLCAGVTF 169 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 89999888877766654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.41 E-value=1.6e-12 Score=128.62 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhhhcchhhecccHHHhhh-hcC------CChhhhhHHHHHHHHHHHHHhhhhhhhhhhh-hhccccCch
Q 012910 239 LEFWILSFAMACGMGSGLATVNNISQIGG-SLG------YSSFETSSLISLWSIWNFLGRFGAGYVSDYF-LHVKEWARP 310 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~-~~~~~~~r~ 310 (453)
+.+|.+.+..++.....+....+++.+++ ++| +++.+.++..+...++..++.++.|+++||+ + ||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g------~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG------KY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC------SH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ch
Confidence 45666666777766666667777787765 578 9999999999999999999999999999999 6 44
Q ss_pred hHHHHHHHHHHHHHHHHH-hc-chhHHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhh---hhhhhhhhhhhhh
Q 012910 311 LFMVITLAAMSIGHLIIA-SG-LPGALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNT---ITIANPVGSYIFS 385 (453)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~i~g 385 (453)
+++..+.++..++.++.. .+ +.+.+++..++.|++.+...+...+++.|.+|+++|+++.+. .+....+|.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~g 164 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-FA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 566677777777776665 44 666777888899999999999999999999999999876666 7888899985 79
Q ss_pred hhhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHHHHHHH
Q 012910 386 VRVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCGSLAAF 429 (453)
Q Consensus 386 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 429 (453)
|.+.+.+.+..+ |+..|++.+++.+++.++.+
T Consensus 165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHH
Confidence 989999988766 89999988887776665443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=2.3e-10 Score=112.06 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=95.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-------------------hcchh
Q 012910 273 SFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFMVITLAAMSIGHLIIA-------------------SGLPG 333 (453)
Q Consensus 273 ~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~~~~~~~~~i~~~~~~-------------------~~~~~ 333 (453)
..+.+++.+.+.++..+|.+++|+++||+ |||+++.++.++..++.++.+ .++.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~------GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF------GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHH
Confidence 34567788889999999999999999999 788899999888888877654 23556
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhHhhccccccchhhhhhhhhhhhhhhhhhhhhhhhee
Q 012910 334 ALYAGSILVGVCYGSQWSLMPTIASEIFGVLQMGTIFNTITIANPVGSYIFSVRVVGYIYD 394 (453)
Q Consensus 334 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~g~~~~g~l~~ 394 (453)
.+++..++.|++.|...+..+.++.|..|+++|+...++.+.+..+|.. .++.+.....+
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~~~ 187 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhhcc
Confidence 7888899999999999999999999999999999999999988888875 45544444433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.97 E-value=8.5e-11 Score=112.61 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=111.3
Q ss_pred HhhhhHHHHHHHHHHhhhcchhhecccHHHhhhh-cCCChhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhccccCchhHH
Q 012910 235 AICTLEFWILSFAMACGMGSGLATVNNISQIGGS-LGYSSFETSSLISLWSIWNFLGRFGAGYVSDYFLHVKEWARPLFM 313 (453)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~i~~~ig~~~~G~l~Dr~~~~~~~~r~~~~ 313 (453)
.+|+|++|.+....++..........++|.++++ .|+|+.+.+.+.+...++..++++++|+++||+ +||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~------Grr~~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL------GLRKYL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS------TTCCHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cchHHH
Confidence 5788999988887777766666677788988865 799999999999999999999999999999999 556666
Q ss_pred HHHHHHHHHH---HHHHHhcc-h-hHHHHHHHHHHHhhhhhhhhhHHHHhHhhcc--ccccchhhhhhhhhhhhhhhhhh
Q 012910 314 VITLAAMSIG---HLIIASGL-P-GALYAGSILVGVCYGSQWSLMPTIASEIFGV--LQMGTIFNTITIANPVGSYIFSV 386 (453)
Q Consensus 314 ~~~~~~~~i~---~~~~~~~~-~-~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~i~g~ 386 (453)
..+..+..+. ........ . ........+.+.+.+...+.....+.+..++ ++++..+|..+....+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 6655544331 11111100 0 0011122222333333333333333333332 4567778888888888885 688
Q ss_pred hhhhhheeccCCCCCCccccccchHHHHHHHHHHHHHH
Q 012910 387 RVVGYIYDREASGEGNKCTGTHCFMLSFFIMGSATLCG 424 (453)
Q Consensus 387 ~~~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~ 424 (453)
.+.+.+.+. + |+..|++.++..++.
T Consensus 156 ~l~~~l~~~-~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 156 SIVGIMFTI-N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence 888988774 3 688887766554433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=77.11 E-value=0.69 Score=22.37 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=10.7
Q ss_pred chhhhhhccCchHHH
Q 012910 84 RQQRLTRLLGPWVVL 98 (453)
Q Consensus 84 ~~g~~~~~~g~r~~~ 98 (453)
+.|+++.|||||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 467777777798753
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.41 E-value=38 Score=22.89 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 012910 408 HCFMLSFFIMGSATLCGSLAAFGL 431 (453)
Q Consensus 408 ~~~~~~f~~~~~~~~~~~i~~~~~ 431 (453)
+-+.....+.+++.++++++.+.+
T Consensus 9 n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666554443
Done!