Query 012911
Match_columns 453
No_of_seqs 128 out of 223
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3871 Cell adhesion complex 100.0 2E-158 4E-163 1180.9 32.4 427 6-451 10-448 (449)
2 PF05291 Bystin: Bystin; Inte 100.0 4E-134 9E-139 990.1 31.1 295 130-424 1-300 (301)
3 PF11510 FA_FANCE: Fanconi Ana 98.7 7E-07 1.5E-11 88.6 17.4 229 166-398 7-247 (263)
4 cd07439 FANCE_c-term Fanconi a 98.0 0.00035 7.6E-09 69.3 17.7 226 166-397 2-239 (254)
5 cd07313 terB_like_2 tellurium 79.5 17 0.00037 30.2 8.7 75 314-396 4-80 (104)
6 KOG2153 Protein involved in th 74.1 31 0.00068 39.3 11.2 126 270-395 281-432 (704)
7 KOG1832 HIV-1 Vpr-binding prot 67.6 5.8 0.00013 46.6 4.0 18 117-134 1487-1504(1516)
8 COG4103 Uncharacterized protei 64.8 42 0.00091 31.7 8.4 99 274-395 8-108 (148)
9 PF07240 Turandot: Stress-indu 60.9 9.5 0.00021 32.9 3.2 30 369-398 12-43 (85)
10 PF04147 Nop14: Nop14-like fam 60.8 79 0.0017 36.8 11.4 138 174-322 427-594 (840)
11 PF10446 DUF2457: Protein of u 59.0 8.5 0.00018 41.8 3.2 39 374-419 405-446 (458)
12 PF04931 DNA_pol_phi: DNA poly 55.6 13 0.00028 42.3 4.1 15 165-179 735-749 (784)
13 COG3189 Uncharacterized conser 50.9 22 0.00048 32.4 4.0 38 364-405 58-95 (117)
14 KOG2147 Nucleolar protein invo 45.8 1.9E+02 0.0041 33.9 11.0 83 218-310 467-552 (823)
15 PF11116 DUF2624: Protein of u 38.9 72 0.0016 27.6 5.1 44 371-414 19-62 (85)
16 cd00159 RhoGAP RhoGAP: GTPase- 38.4 2.7E+02 0.0059 24.3 9.0 106 178-309 31-149 (169)
17 PF10446 DUF2457: Protein of u 37.4 29 0.00062 37.9 3.0 7 195-201 228-234 (458)
18 PRK13434 F0F1 ATP synthase sub 32.5 2.4E+02 0.0052 26.4 8.0 83 307-401 50-133 (184)
19 KOG1617 CDP-alcohol phosphatid 30.9 31 0.00068 34.8 1.9 37 177-216 166-202 (243)
20 PRK13430 F0F1 ATP synthase sub 28.1 2.6E+02 0.0056 28.2 7.9 87 306-403 145-231 (271)
21 KOG4557 Origin recognition com 27.0 73 0.0016 32.3 3.7 56 171-238 105-172 (262)
22 PF06524 NOA36: NOA36 protein; 25.5 40 0.00087 34.8 1.7 21 46-66 223-243 (314)
23 PF04147 Nop14: Nop14-like fam 25.1 1.2E+03 0.025 27.5 14.5 182 186-396 414-618 (840)
24 PF04931 DNA_pol_phi: DNA poly 24.5 38 0.00082 38.7 1.4 18 168-185 731-748 (784)
25 PF09371 Tex_N: Tex-like prote 24.1 1.6E+02 0.0034 28.6 5.4 67 337-418 2-89 (193)
26 PF09026 CENP-B_dimeris: Centr 21.6 51 0.0011 29.4 1.3 10 166-175 64-73 (101)
27 KOG2141 Protein involved in hi 20.4 7.1E+02 0.015 29.5 10.1 159 193-378 624-796 (822)
28 PTZ00415 transmission-blocking 20.3 55 0.0012 41.5 1.6 12 279-290 468-480 (2849)
29 PF13551 HTH_29: Winged helix- 20.2 2.5E+02 0.0053 22.9 5.1 66 174-241 35-109 (112)
30 PF11707 Npa1: Ribosome 60S bi 20.2 3.4E+02 0.0074 27.8 7.1 31 368-398 271-301 (330)
No 1
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=100.00 E-value=1.6e-158 Score=1180.92 Aligned_cols=427 Identities=55% Similarity=0.854 Sum_probs=371.7
Q ss_pred hhccCCCCCCCCCCCCCCcccccccc--chhhhhh--hcccccccCchhhHHHHHHHHHHHHHHhhhccCCcccccchhh
Q 012911 6 KRERFQNPQPFLPSNDDDKSVASSKK--RSKAAKH--HQKQDKMISSGISSKILKEAMIQQKEVLEESEEPNATKSAFVF 81 (453)
Q Consensus 6 kk~rh~pL~~qi~~~~~~~~~~~~~~--r~k~~~~--~~e~e~~vd~~~SkkIL~~Ar~Qq~E~~~e~~~~~~~~~~~~~ 81 (453)
++.+|.||.+||. .++ ++++++ |+|.+++ ..++++|||+++|+|||++||+||.|+++|+.....+..++..
T Consensus 10 ~~~~~~pl~kdl~---a~~-va~~k~~~r~k~k~~~e~~e~d~~ida~~S~KIL~~Ak~Qq~E~~~Ee~~~~~~~s~~~~ 85 (449)
T KOG3871|consen 10 RKQRHAPLLKDLA---AGQ-VAKKKKLARSKVKKHDEANEEDGFIDAKASRKILQLAKEQQLELAEEENAESSRNSAFEA 85 (449)
T ss_pred chhccCchhhhhH---HHh-hhhhhhhhhhhhhhhhhhccccccccchhhHHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 4557999999998 344 555554 5555444 3455689999999999999999999998887655444433321
Q ss_pred hhHhhhh-ccCCCCcccccccCCCCcccccc-CCccccccChHHHHHHHHHcccCCCCCcChHHHHHHHHhhhhhhhc--
Q 012911 82 AEEEQSK-RRVEEDEDDIDDFGGFNETQSQF-GNYEQEEIDEDDERLLEAFLSKDAGPQVTLADLIIKKIKENDANIA-- 157 (453)
Q Consensus 82 ~~~~~~~-~~~~dd~~~~dd~~~~~~~~~~~-~e~e~~eideeDe~~l~~Fm~~~~~~~~tLADiImeKi~eke~~~~-- 157 (453)
.-+...- ++++.+++++||+++++.++++. ++++.+|||++|++.|++|++++++..+||+||||+||+||++...
T Consensus 86 ~~~~~~~~ee~~i~~~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r~l~k~a~~~~tL~diIm~ki~ekead~~~~ 165 (449)
T KOG3871|consen 86 RFTTASYGEEDEIEEEDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFERFLKKSADFNYTLADIIMAKIREKEADVETE 165 (449)
T ss_pred hccccccccccccccchhcccccccccccchhhhhhhhhcCcchHHHHHHHhccccchhccHHHHHHHHHHHHHhhHHhh
Confidence 1000010 11111222334444544333322 2345799999999999999999999999999999999999998732
Q ss_pred ----cCCCCCCCCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh
Q 012911 158 ----SGETRPLPKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA 233 (453)
Q Consensus 158 ----~~~~~~~~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~ 233 (453)
+.++.+.+.|||+|+++|++||.+||+||||||||||||||+|.|||+|||||+|+.|||||||||||||+|||++
T Consensus 166 ~~~~~~~e~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKiIp~l~nWediLylT~Pe~Ws~~amyqaTRiF~SnL~~ 245 (449)
T KOG3871|consen 166 QSDPDENEFPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKIIPSLRNWEDILYLTEPEEWSPAAMYQATRIFASNLKP 245 (449)
T ss_pred hcccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhcccccccHhHheeecCccccCHHHHHHHHHHHHhcCCH
Confidence 2234567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012911 234 KKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 313 (453)
Q Consensus 234 ~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsa 313 (453)
+|||||||+|||||||+||+++||||||||+|||||||||+|||||||||||+|||||||||+||||||+||||||||||
T Consensus 246 ~~~QrFynlvLLpRvRddi~e~kkLnyhLY~AlkKaLyKPsAffkG~l~PL~esgtCtlREAvI~gSvl~K~siPvlHSs 325 (449)
T KOG3871|consen 246 KMAQRFYNLVLLPRVRDDIREYKKLNYHLYQALKKALYKPSAFFKGILFPLVESGTCTLREAVIIGSVLAKVSIPVLHSS 325 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhHHHHHHHHHHhcCcHHHhccchhhhccCCCchHHHHHHHHHHHhhCcchhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911 314 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 393 (453)
Q Consensus 314 aaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~ 393 (453)
|||++||+|+|||+||+|||+||||||||||||||+||+|||||+++.|.|||+||||||+||||||+||+.|||++|++
T Consensus 326 aallrl~em~ysgatSvFir~lLdKKYalPYrvvD~~V~hFmrf~~d~R~lpVlwHqslLtf~QRYK~di~~eqkdaLle 405 (449)
T KOG3871|consen 326 AALLRLAEMDYSGATSVFIRILLDKKYALPYRVVDALVFHFMRFRTDERVLPVLWHQSLLTFAQRYKNDITQEQKDALLE 405 (449)
T ss_pred HHHHHHHhcccCCcchHHHHHHhhhhccchHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHhhcCCCCCCCCccccccccccccccccccccCCCCCCCCC
Q 012911 394 LLKKQKHKLVTPEIIRELDSSRNRGEKEGDLVSISYPMSVINKTIEEDRFDIPDVPME 451 (453)
Q Consensus 394 Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 451 (453)
|+|.|+|+.|||||||||+++.+||+++.+| |++++.++|+|+
T Consensus 406 llr~~~H~~i~PEIrREL~~~~~r~~~~~~~---------------~~~~~~~~v~me 448 (449)
T KOG3871|consen 406 LLRLQGHYLIGPEIRRELLASASRDEEDPQM---------------EDRFADDDVEME 448 (449)
T ss_pred HHHhcCCCcCCHHHHHHHHhccccCccccch---------------hhcccCCCcccC
Confidence 9999999999999999999999999976654 778888888875
No 2
>PF05291 Bystin: Bystin; InterPro: IPR007955 Trophinin and tastin form a cell adhesion molecule complex that potentially mediates an initial attachment of the blastocyst to uterine epithelial cells at the time of implantation. Trophinin and tastin bind to an intermediary cytoplasmic protein called bystin. Bystin may be involved in implantation and trophoblast invasion because bystin is found with trophinin and tastin in the cells at human implantation sites and also in the intermediate trophoblasts at invasion front in the placenta from early pregnancy []. This family also includes the Saccharomyces cerevisiae protein ENP1. ENP1 is an essential protein in S. cerevisiae and is localised in the nucleus []. It is thought that ENP1 plays a direct role in the early steps of rRNA processing as enp1 defective S. cerevisiae cannot synthesise 20S pre-rRNA and hence 18S rRNA, which leads to reduced formation of 40S ribosomal subunits [].
Probab=100.00 E-value=4e-134 Score=990.14 Aligned_cols=295 Identities=62% Similarity=1.049 Sum_probs=285.1
Q ss_pred HcccCCCCCcChHHHHHHHHhhhhhhhc----cCCCCCC-CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH
Q 012911 130 FLSKDAGPQVTLADLIIKKIKENDANIA----SGETRPL-PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE 204 (453)
Q Consensus 130 Fm~~~~~~~~tLADiImeKi~eke~~~~----~~~~~~~-~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWE 204 (453)
||++++++++||||+||+||+|++++.. ++++.+. ..+||||++||++||.+||+||||||||||||||+|+|||
T Consensus 1 fm~~~~~~~~~Lad~I~~Ki~e~e~~~~~~~~~~~~~~~~~~l~~kVvevY~~vG~~Ls~YrSGkLPKafKiiP~l~nWE 80 (301)
T PF05291_consen 1 FMNEEAGQRRTLADIIMEKIKEKEAEQQGQQSDEEGKPEPEELDPKVVEVYTKVGELLSRYRSGKLPKAFKIIPSLPNWE 80 (301)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhccccCccCCCCCcccCCHHHHHHHHHHHHHHhhcCCCCCCcCeecccCchhHH
Confidence 8999999999999999999999999742 2223333 4899999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhccc
Q 012911 205 QVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPL 284 (453)
Q Consensus 205 eiL~lT~P~~WSp~A~y~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL 284 (453)
+|||+|+|++|||||||+|||||+||||+++|||||++||||||||||++|||||||||+|||||+|||+||||||||||
T Consensus 81 eiL~lT~P~~WSp~A~~~aTRiF~SnL~~~~aqrF~~~VLLprvredI~~~KKLn~hly~ALkKalyKP~AffkGil~PL 160 (301)
T PF05291_consen 81 EILYLTRPEKWSPHAMYEATRIFASNLNEKMAQRFYNLVLLPRVREDIAENKKLNYHLYMALKKALYKPAAFFKGILLPL 160 (301)
T ss_pred HHHHhCChhhccHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCc
Q 012911 285 CKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVM 364 (453)
Q Consensus 285 ~~sg~CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~l 364 (453)
|+|||||+|||+||||||+||||||+||||||++||+|+|+|++|+|||+||+|||||||||||+||+||+||.++.++|
T Consensus 161 ~~sg~CTlrEA~Ii~svl~k~sipvlhsaaaL~kl~~~~~~g~~s~flr~ll~KKYaLP~rviDalv~hFlrf~~~~~~l 240 (301)
T PF05291_consen 161 CESGTCTLREAVIIGSVLAKVSIPVLHSAAALLKLAEMEYSGANSIFLRVLLDKKYALPYRVIDALVFHFLRFRNDKRKL 240 (301)
T ss_pred hcCCCccHHHHHHHHHHHHhcCCCchhHHHHHHHHHcCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCCCCCCCCcc
Q 012911 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRNRGEKEGDL 424 (453)
Q Consensus 365 PVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~R~~~~~~~ 424 (453)
||+||||||+||||||+|||+|||++|++||++|+|++|||||||||.+|++||++.++|
T Consensus 241 PVlWHq~lL~F~qrYk~di~~eqk~~L~~ll~~~~H~~ItpEIrreL~~~~~r~~~~~~~ 300 (301)
T PF05291_consen 241 PVLWHQSLLVFVQRYKNDITEEQKEALLELLRKQKHPQITPEIRRELLASRSRGVEIMDM 300 (301)
T ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCHHHHHHHhcCCCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999976654
No 3
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=98.71 E-value=7e-07 Score=88.61 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHHHHhhccc------CCCCccccccCCCc--hHHHHHhhcCCCCCchhHHHHhHHHh---hcCCChH
Q 012911 166 KLDESFINLYKGVGEFLSKYTA------GKMPKAFKHIPSTQ--MWEQVLYLTEPEKWTPNAMFQATRIF---SSNLNAK 234 (453)
Q Consensus 166 ~l~pkVvevY~~vG~~Ls~YrS------GKLPKaFKiiP~l~--nWEeiL~lT~P~~WSp~A~y~aTriF---~Snl~~~ 234 (453)
+||.-+....-++-++|..-.. |..|..++++=..+ ..|-+-..-+=.+||..++++..+.+ ..+++-.
T Consensus 7 ~lp~~~~~~~~~lk~ll~~~~e~~~~~~~~~~~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~Ls~dls~~ 86 (263)
T PF11510_consen 7 ELPKHIQDQVPRLKELLETESEGLEGLEDAPPSELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCSSLLALSPDLSHS 86 (263)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-----------HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHHHHHH-SS---HH
T ss_pred hCcHHHHHHHHHHHHHHHHhhhhcccccCCChHHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHccCcccchh
Confidence 4555555555555555554433 44667777774432 44444444555689999999999977 4577888
Q ss_pred HHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcC-chhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHH
Q 012911 235 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSS 313 (453)
Q Consensus 235 ~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyK-P~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsa 313 (453)
.|--|....+||+++.- +..-..+|..|+.-..-+ |.++..|+++||...+.-..-.+-+|..++++-+++..|-.
T Consensus 87 ~a~~l~~sl~LpkilsL---~~~ASR~L~sal~~f~k~~p~~~~~all~PlL~~~~~g~~Q~eLl~rlvk~~~l~p~~~~ 163 (263)
T PF11510_consen 87 NATVLLRSLFLPKILSL---EEPASRLLVSALTSFCKKYPRPVCEALLVPLLQAPGLGPPQCELLCRLVKKECLEPDHRL 163 (263)
T ss_dssp HHHHHHHHHHHHHHHH----SS---HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT--HHHHHHHHHHHH-TTS-HHHHH
T ss_pred hHHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHH
Confidence 89999999999999987 557778888888766655 99999999999887665667788899999988899999999
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911 314 VALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 393 (453)
Q Consensus 314 aaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~ 393 (453)
..+-.+.+.+|+-.+..++..+|++|-.|+-..++-++.-+..-...- .=-+.+-+-+|+|+..|...|++.||..|-.
T Consensus 164 l~l~~~L~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~-skSlkFakLlLtvltKy~~~it~~~~~~L~~ 242 (263)
T PF11510_consen 164 LLLRQILELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQF-SKSLKFAKLLLTVLTKYQSQITEAHKLSLAE 242 (263)
T ss_dssp HHHHHHHHS---HHHHHHHHHHHTT-----HHHHHHHHHHHH---------SHHHHHHHHHHHHHTGGG--HHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhh-hcchHHHHHHHHHHHHcchhccHHHHHHHHH
Confidence 888899999999999999999999999999999998988775432221 1256799999999999999999999999988
Q ss_pred HHHhC
Q 012911 394 LLKKQ 398 (453)
Q Consensus 394 Ll~~~ 398 (453)
.+...
T Consensus 243 ~l~~n 247 (263)
T PF11510_consen 243 ALELN 247 (263)
T ss_dssp HH-SS
T ss_pred HHHhc
Confidence 87543
No 4
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=98.03 E-value=0.00035 Score=69.31 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=172.9
Q ss_pred CCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHH-----HHHhhcCCCCCchhHHHHhHHHhhcCC---ChHHHH
Q 012911 166 KLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWE-----QVLYLTEPEKWTPNAMFQATRIFSSNL---NAKKAE 237 (453)
Q Consensus 166 ~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWE-----eiL~lT~P~~WSp~A~y~aTriF~Snl---~~~~aq 237 (453)
.+++.+.++-.++-++|..|..+. |-++-++=.+.-|. -+...-+.++=+...+....+.|.+.. +...+-
T Consensus 2 e~~~~i~~~~~~ikeLl~~~~~~~-~~~~~~L~~l~~~~~~~~~~lc~~L~~~~~~d~~~~~Lcs~lL~~~~~~s~~~~~ 80 (254)
T cd07439 2 ELPSVIQEVLEDIKELLLQEGEWL-PSSPDELQFLHSCSPSQMEVLCSQLQLSSLSDQTLLLLCSSLLPLSPDLSLANAV 80 (254)
T ss_pred cchHHHHHHHHHHHHHHHhhccCc-CChHHHHHHHccCCHHHHHHHHHHhccCCcccHHHHHHHHHHhccCCccCcccHH
Confidence 366777788888888888887765 55544444444442 233334444455556666677777763 777789
Q ss_pred HHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhc-CchhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHHHHH
Q 012911 238 RFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLY-KPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVAL 316 (453)
Q Consensus 238 rF~~~VLLprvredI~e~KkLn~hLy~ALkKaly-KP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsaaaL 316 (453)
.|...++||+++.-= ..-..+|+-|+.--.- .|.+|..++++||.+.+.-+.-.+-+|..++..+- ++.|....+
T Consensus 81 ~~~~~l~LpKl~~l~---~~aSR~L~~al~~f~~r~~~~~ceall~PLl~~~~~~~~q~ell~rlike~~-~~~~~~l~~ 156 (254)
T cd07439 81 VFTRHLLLPKLLSLN---ESASRALVAALASFAKRYPRPFCEALLRPLLQCPHPGPFQAELLCRLVKECF-EPDAVLLLL 156 (254)
T ss_pred HHHHHHHhhhhhccC---cchhHHHHHHHHHHHHhCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-cHHHHHHHH
Confidence 999999999998632 4445788887765544 49999999999999876556777778999998887 778888888
Q ss_pred HHHhccc---CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 012911 317 LKLAEME---YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRI 393 (453)
Q Consensus 317 ~kl~~~~---~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~ 393 (453)
.++-.-+ |+-.+-..+..+|+++-.|.-..++.+|..+..-...-.. -+.+-+-+|.|+..|...++..++..|..
T Consensus 157 ~q~L~~~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~sk-SlkFa~lll~~itky~~~~~~~~~~~L~~ 235 (254)
T cd07439 157 HQILISPNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSK-SLKFAKLLLAVITKYGPQMSPAHKQSLSE 235 (254)
T ss_pred HHHHccccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHccHhhcHHHHHHHHH
Confidence 8876665 9999999999999999999999999999988665443221 45788999999999999999999999998
Q ss_pred HHHh
Q 012911 394 LLKK 397 (453)
Q Consensus 394 Ll~~ 397 (453)
.+..
T Consensus 236 ~~~~ 239 (254)
T cd07439 236 ALER 239 (254)
T ss_pred HHHh
Confidence 8753
No 5
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=79.50 E-value=17 Score=30.21 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=57.6
Q ss_pred HHHHHHhccc--CCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHH
Q 012911 314 VALLKLAEME--YCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDL 391 (453)
Q Consensus 314 aaL~kl~~~~--~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L 391 (453)
+-|.++|..+ ++-.--=.++.++...|.|+-.-.+.+..+|.....+.. .+-.|++..+..++.++|..+
T Consensus 4 ~Ll~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~r~~~ 75 (104)
T cd07313 4 ALLVEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAP--------DLYEFTSLIKEHFDYEERLEL 75 (104)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHhCCHHHHHHH
Confidence 4455555554 555666678889999999999999999999988776654 245788888888899999998
Q ss_pred HHHHH
Q 012911 392 RILLK 396 (453)
Q Consensus 392 ~~Ll~ 396 (453)
++.+-
T Consensus 76 l~~L~ 80 (104)
T cd07313 76 VEALW 80 (104)
T ss_pred HHHHH
Confidence 87763
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.11 E-value=31 Score=39.29 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=81.9
Q ss_pred hcCchhhhhhh---------hcccccCCCcchhHHH--------HHHHHHhccCCC----cccHHHHHHHHhcccCCchH
Q 012911 270 LYKPAAFNKGI---------LFPLCKSGTCNLREAV--------IIGSVIEKISIP----MLHSSVALLKLAEMEYCGTT 328 (453)
Q Consensus 270 lyKP~AFfkGi---------l~PL~~sg~CTlrEA~--------IigSVl~K~SiP----vlHsaaaL~kl~~~~~sg~~ 328 (453)
|=|-.+|.|.. ++=+|-.--|+|-+|+ |+..|+...+-| +.-+.+++-.+++=+--|..
T Consensus 281 lQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~ 360 (704)
T KOG2153|consen 281 LQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSG 360 (704)
T ss_pred HHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccch
Confidence 33445555555 4445554558888887 777777777777 22233566667777777888
Q ss_pred HHHHHHHHHhhh-cCcHHHHHHHHHHHHhhhccCCCcchH--H--HHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 012911 329 SYFIKLLLEKKY-GLPYRVVDAIVAHFMRFLEDTRVMPVI--W--HQSLLAFVQRYKNELQKEDKDDLRILL 395 (453)
Q Consensus 329 s~Flr~LLdKKY-aLPyrviDalV~hFlrF~~~~~~lPVl--W--HQslL~FvqrYk~dls~eqk~~L~~Ll 395 (453)
|+++-.+++.-| ..=|.|+-.+.+-|+.-+.+....+-- | .|...-|-+.=...++.-||.+=++..
T Consensus 361 sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ 432 (704)
T KOG2153|consen 361 SLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERN 432 (704)
T ss_pred hHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 888766666544 345667778888887666544443433 3 477777777777778888888776644
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.56 E-value=5.8 Score=46.64 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.1
Q ss_pred cccChHHHHHHHHHcccC
Q 012911 117 EEIDEDDERLLEAFLSKD 134 (453)
Q Consensus 117 ~eideeDe~~l~~Fm~~~ 134 (453)
...|+||+..++-||+..
T Consensus 1487 ~D~Dee~~~~~~d~~ss~ 1504 (1516)
T KOG1832|consen 1487 EDEDEEDDGEMQDFMSSG 1504 (1516)
T ss_pred cccchhhhhhhhcccCCC
Confidence 478899999999999873
No 8
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.79 E-value=42 Score=31.72 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=71.9
Q ss_pred hhhhhhhhcccccCCCcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccC--CchHHHHHHHHHHhhhcCcHHHHHHHH
Q 012911 274 AAFNKGILFPLCKSGTCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY--CGTTSYFIKLLLEKKYGLPYRVVDAIV 351 (453)
Q Consensus 274 ~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~--sg~~s~Flr~LLdKKYaLPyrviDalV 351 (453)
-+||++|.=++..... .-=|.+-+++-|+.+++-+- +.+---=+|.||.-.|.++-.-+|+|+
T Consensus 8 ~sfl~~l~~~~~~~~~---------------adDP~lAa~~Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali 72 (148)
T COG4103 8 LSFLKQLPGGLDGDNS---------------ADDPRLAAAALLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALI 72 (148)
T ss_pred HHHHHhccCccccCcC---------------CCCHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677777655543211 23466655555555555443 334445678899999999999999999
Q ss_pred HHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 012911 352 AHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILL 395 (453)
Q Consensus 352 ~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll 395 (453)
.|--.|..+.- .|-.|.-.-+..|+++||-.|..++
T Consensus 73 ~~~e~~~~Ea~--------d~y~fts~l~r~Ld~e~R~eli~~m 108 (148)
T COG4103 73 EAGEEAGYEAI--------DLYSFTSVLKRHLDEEQRLELIGLM 108 (148)
T ss_pred HHHHHhhHHHH--------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99988887654 4578889999999999999998877
No 9
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=60.92 E-value=9.5 Score=32.89 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhh--cCHHHHHHHHHHHHhC
Q 012911 369 HQSLLAFVQRYKNE--LQKEDKDDLRILLKKQ 398 (453)
Q Consensus 369 HQslL~FvqrYk~d--ls~eqk~~L~~Ll~~~ 398 (453)
-|.|+.|..||... |+++++..+-+.++.+
T Consensus 12 i~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y 43 (85)
T PF07240_consen 12 IQELIAFYEKYSPRLPLTPQDRQRIDRFIRRY 43 (85)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHH
Confidence 47899999999999 9999999999999765
No 10
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=60.82 E-value=79 Score=36.78 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcccCCCCcccccc-----CCCc-------------hHHHHHhhcCCC-CCchhHHHHhHHHhh--cCCC
Q 012911 174 LYKGVGEFLSKYTAGKMPKAFKHI-----PSTQ-------------MWEQVLYLTEPE-KWTPNAMFQATRIFS--SNLN 232 (453)
Q Consensus 174 vY~~vG~~Ls~YrSGKLPKaFKii-----P~l~-------------nWEeiL~lT~P~-~WSp~A~y~aTriF~--Snl~ 232 (453)
-|..+-.+|+.|..-.+|.+++-| |+|. -|+-|+++.... .=.+..+-..+++.. +...
T Consensus 427 s~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~ 506 (840)
T PF04147_consen 427 SHEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKY 506 (840)
T ss_pred CHHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777776655 5542 267777887766 333444555555332 2223
Q ss_pred hHHHHHHHHHhhhHHHHHhhhh---------hccccHHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHh
Q 012911 233 AKKAERFYKLVLLPRIRDDIRK---------NKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIE 303 (453)
Q Consensus 233 ~~~aqrF~~~VLLprvredI~e---------~KkLn~hLy~ALkKalyKP~AFfkGil~PL~~sg~CTlrEA~IigSVl~ 303 (453)
+..+-.+|..+|...-. .+.. .-.+.-=+|..|.-.+|=-.-|+.-++-|.. ++||.+|.
T Consensus 507 p~~~a~~~r~~L~~~~~-~~~~~~l~~~~~~~P~l~~Lvllklv~~lFPTSD~~HpVVTPal----------llm~~~L~ 575 (840)
T PF04147_consen 507 PEEAAECFREVLKEMQK-RFRKGALKPKERSWPSLSDLVLLKLVGTLFPTSDFRHPVVTPAL----------LLMSEYLS 575 (840)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhhcccccCCCCCChhHHHHHHHHHHhcCcccccCcchhHHH----------HHHHHHHh
Confidence 33444444444433211 1111 0112333455666666666666665555532 46888888
Q ss_pred ccCCCcccHHHHHHHHhcc
Q 012911 304 KISIPMLHSSVALLKLAEM 322 (453)
Q Consensus 304 K~SiPvlHsaaaL~kl~~~ 322 (453)
.|.|-.++-.+.=+-||.+
T Consensus 576 q~~v~s~~di~~GlfL~~l 594 (840)
T PF04147_consen 576 QCRVRSLRDIASGLFLCTL 594 (840)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 8888877766666666665
No 11
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=59.01 E-value=8.5 Score=41.80 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHh---hcCCCCC
Q 012911 374 AFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELD---SSRNRGE 419 (453)
Q Consensus 374 ~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~---~~~~R~~ 419 (453)
-|.|.|-+-=..+| +...+-+.-+.|=+|||- ++++|.-
T Consensus 405 Kf~rk~C~rA~Keq-------~errp~PG~GAERMrELGL~mA~r~~ay 446 (458)
T PF10446_consen 405 KFWRKHCRRARKEQ-------IERRPAPGKGAERMRELGLEMAGRFRAY 446 (458)
T ss_pred HHHHHHHHHHHhhc-------cccCCCCCchHHHHHHHHHHHhhhhhhc
Confidence 35555644333333 234777888999999974 6666643
No 12
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=55.58 E-value=13 Score=42.32 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=10.7
Q ss_pred CCCChHHHHHHHHHH
Q 012911 165 PKLDESFINLYKGVG 179 (453)
Q Consensus 165 ~~l~pkVvevY~~vG 179 (453)
..||+.+.++|+.-.
T Consensus 735 ~~lD~~La~~Fk~r~ 749 (784)
T PF04931_consen 735 MALDEQLAAIFKERK 749 (784)
T ss_pred HHHHHHHHHHHHHHH
Confidence 367888888887543
No 13
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=50.93 E-value=22 Score=32.39 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCH
Q 012911 364 MPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTP 405 (453)
Q Consensus 364 lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~Itp 405 (453)
-|..|+ .|++||...|+...-.+|.+|+..-+|..+|.
T Consensus 58 dp~~w~----~F~~rY~~EL~~~~~~~l~~L~~~~~~~~lTL 95 (117)
T COG3189 58 DPKKWD----EFRERYRAELNAQDAQALEDLLDIASHGPLTL 95 (117)
T ss_pred CHHHHH----HHHHHHHHHHhcccHHHHHHHHHHHcCCCeEE
Confidence 366787 69999999997666668888887766666653
No 14
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=45.79 E-value=1.9e+02 Score=33.86 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=42.7
Q ss_pred hHHHHhHHHhhcCCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhh--hhhcccccCCCcchhHH
Q 012911 218 NAMFQATRIFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNK--GILFPLCKSGTCNLREA 295 (453)
Q Consensus 218 ~A~y~aTriF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfk--Gil~PL~~sg~CTlrEA 295 (453)
..+|..+.+|...++ .=.+.+||.++++.-+..|--|.-.|-.|.-.+ ||+ |+|||-.....--..=|
T Consensus 467 ~~L~~l~q~~pe~~~-----~~~~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv-----~f~l~g~LFptSDf~HpVVtPa 536 (823)
T KOG2147|consen 467 AHLISLAQMFPEIAS-----IVRCVRLLERIHEKGEQIKQKNHPVSPSLDDLV-----FFKLTGLLFPTSDFRHPVVTPA 536 (823)
T ss_pred HHHHHHHHhhhHHhh-----hhHHHHHHHHHHHHHHHhcccCccCCCCcchhh-----hhhhhcccccccccccccccHH
Confidence 356666776655322 223345888888888777754544444444333 344 35777654432222223
Q ss_pred HH-HHHHHhccCCCcc
Q 012911 296 VI-IGSVIEKISIPML 310 (453)
Q Consensus 296 ~I-igSVl~K~SiPvl 310 (453)
.| ++-+|.+|.|-.+
T Consensus 537 lllm~e~L~~~p~~Sl 552 (823)
T KOG2147|consen 537 LLLMSEALSQSPIASL 552 (823)
T ss_pred HHHHHHHHHhCcchhH
Confidence 33 3335555554444
No 15
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.88 E-value=72 Score=27.61 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhc
Q 012911 371 SLLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSS 414 (453)
Q Consensus 371 slL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~ 414 (453)
-||-+++.|.-.||.+|-+.+..++|.+++-..-++-|..|...
T Consensus 19 eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 19 ELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 58899999999999999999999999999998888888776643
No 16
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=38.44 E-value=2.7e+02 Score=24.32 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=65.1
Q ss_pred HHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCCh-----HHHHHHHHHh-------hh
Q 012911 178 VGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNA-----KKAERFYKLV-------LL 245 (453)
Q Consensus 178 vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~-----~~aqrF~~~V-------LL 245 (453)
+..+...+.+|..+. .+..|+++.+-.+-|.|..+|+. ...++|.+.. -.
T Consensus 31 ~~~l~~~~~~~~~~~------------------~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~ 92 (169)
T cd00159 31 IEELKKKFDRGEDID------------------DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERI 92 (169)
T ss_pred HHHHHHHHhcCCCCc------------------cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHH
Confidence 555666777777654 57889999999999999999865 5566776653 44
Q ss_pred HHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhcccccCCCcch-hHHHHHHHHHhccCCCc
Q 012911 246 PRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSGTCNL-REAVIIGSVIEKISIPM 309 (453)
Q Consensus 246 prvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL~~sg~CTl-rEA~IigSVl~K~SiPv 309 (453)
..++.-|..--+.|.+++..|-.-+++=... .+...||. .=|+++|-.|-+.+.+.
T Consensus 93 ~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~--------~~~n~M~~~nLa~~f~p~l~~~~~~~ 149 (169)
T cd00159 93 EALKELLKSLPPENRDLLKYLLKLLHKISQN--------SEVNKMTASNLAIVFAPTLLRPPDSD 149 (169)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh--------ccCCCCCHHHHHHHHccccCCCCCcc
Confidence 5555555544455555555554433331111 01122443 34666777777777664
No 17
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=37.42 E-value=29 Score=37.91 Aligned_cols=7 Identities=29% Similarity=0.093 Sum_probs=3.4
Q ss_pred cccCCCc
Q 012911 195 KHIPSTQ 201 (453)
Q Consensus 195 KiiP~l~ 201 (453)
-|=|+++
T Consensus 228 DIDPSFP 234 (458)
T PF10446_consen 228 DIDPSFP 234 (458)
T ss_pred CCCCCCC
Confidence 3445554
No 18
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=32.53 E-value=2.4e+02 Score=26.44 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCC-cchHHHHHHHHHHHHhhhhcCH
Q 012911 307 IPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRV-MPVIWHQSLLAFVQRYKNELQK 385 (453)
Q Consensus 307 iPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~-lPVlWHQslL~FvqrYk~dls~ 385 (453)
||.-.-...|.+++.-..+..+.=||++|++++- ...+..++..|.+..++.+. .-+. + .....||+
T Consensus 50 i~~~~K~~~l~~~~~~~~~~~~~nfl~lL~e~~R---~~~l~~I~~~f~~l~~~~~~~~~~~-----V----~sA~~Ls~ 117 (184)
T PRK13434 50 VSPEEKEQTLAKNLRGKISDITLNFLGVLLNKGR---FIYLPEIQKDFTVELDKKKGRVRAQ-----I----VSYPSLEP 117 (184)
T ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHcCeEEEE-----E----EEcCCCCH
Confidence 4443334445555543445556679999999875 35666777777665543211 0000 0 01236999
Q ss_pred HHHHHHHHHHHhCCCC
Q 012911 386 EDKDDLRILLKKQKHK 401 (453)
Q Consensus 386 eqk~~L~~Ll~~~~H~ 401 (453)
+|++.|.+.+.++...
T Consensus 118 ~q~~~l~~~L~k~~g~ 133 (184)
T PRK13434 118 AQVDKLGSILSEKFKS 133 (184)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999776544
No 19
>KOG1617 consensus CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase [Lipid transport and metabolism]
Probab=30.87 E-value=31 Score=34.83 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=30.5
Q ss_pred HHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCc
Q 012911 177 GVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWT 216 (453)
Q Consensus 177 ~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WS 216 (453)
-.|.+--||++||+|+++.+ .+.-|..+.++| |..||
T Consensus 166 v~~~~y~ry~~l~~p~~~a~--~f~~~~~~~~l~-~~~~S 202 (243)
T KOG1617|consen 166 VAGAFYLRYQNLKLPYTLAV--FFNPWKAATQLT-PLLAS 202 (243)
T ss_pred HHHHHHHHHhcCCCchhHHH--hcchhhhhhhcc-chhhh
Confidence 34666789999999999999 899999998855 66565
No 20
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=28.07 E-value=2.6e+02 Score=28.17 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCH
Q 012911 306 SIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQK 385 (453)
Q Consensus 306 SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~ 385 (453)
+||.-.-...|.+++.-..+..+.-|+++|++++- ...+..++.+|....++.+..-+. .+ .-...||+
T Consensus 145 ~i~~e~K~~ll~~l~~~~~~~~~~nfl~~lv~~~R---~~~l~~i~~~f~~l~~~~~~~~~a----~V----tSA~pLs~ 213 (271)
T PRK13430 145 AAPAEAKRELLARLLYGKVTPVTERLAEQAVGRPR---GRSIEEGLDELSNLAAARRGRSVA----TV----TTAVPLSD 213 (271)
T ss_pred CCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHcCeeEE----EE----EecCCCCH
Confidence 34444444455555543345556679999999854 355666777777665543211000 00 01236999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 012911 386 EDKDDLRILLKKQKHKLV 403 (453)
Q Consensus 386 eqk~~L~~Ll~~~~H~~I 403 (453)
+|++.|.+.|.+..+..|
T Consensus 214 ~q~~~L~~~L~k~~g~~V 231 (271)
T PRK13430 214 EQKQRLAAALSRIYGRPV 231 (271)
T ss_pred HHHHHHHHHHHHHHCCce
Confidence 999999999987655443
No 21
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=27.01 E-value=73 Score=32.27 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCccccccCCCchHHHH-HhhcCCCCCchhHHHHhHHHh-----------hcCCChHHHHH
Q 012911 171 FINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQV-LYLTEPEKWTPNAMFQATRIF-----------SSNLNAKKAER 238 (453)
Q Consensus 171 VvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEei-L~lT~P~~WSp~A~y~aTriF-----------~Snl~~~~aqr 238 (453)
.++|-+.+-.+|+.|++. ||- =+++ +.+|+|. +|..|+|+|.|+. +|++++.+.++
T Consensus 105 c~evi~~a~~vl~syk~~-lpa----------T~~~~~D~SrP~-ft~aA~~~ack~lKlKVdK~kli~~sg~~~s~F~~ 172 (262)
T KOG4557|consen 105 CVEVIKSAQNVLSSYKER-LPA----------TRRANADFSRPV-FTAAAFYLACKKLKLKVDKLKLIEVSGTSESEFSC 172 (262)
T ss_pred HHHHHHHHHHHHHHHHhc-Cch----------hhhcCCcccchH-HHHHHHHHHHHHHHHhhhHhhcccccCCCHHHHHH
Confidence 467888999999999986 332 2332 5678886 9999999999965 56767665543
No 22
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=25.51 E-value=40 Score=34.84 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=15.8
Q ss_pred cCchhhHHHHHHHHHHHHHHh
Q 012911 46 ISSGISSKILKEAMIQQKEVL 66 (453)
Q Consensus 46 vd~~~SkkIL~~Ar~Qq~E~~ 66 (453)
-|=.+|-|..+-+|+.+.+..
T Consensus 223 kdLSmStR~hkyGRQ~~~~~~ 243 (314)
T PF06524_consen 223 KDLSMSTRSHKYGRQGQADED 243 (314)
T ss_pred ccceeeeecchhccccCCCcC
Confidence 455688888888888887654
No 23
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=25.10 E-value=1.2e+03 Score=27.53 Aligned_cols=182 Identities=23% Similarity=0.233 Sum_probs=91.7
Q ss_pred ccCCCCccccccCCCchHHHHHhhcCCCCCchh-HHHHhHHHhh---cCC---ChHHHHHHHHHhhhHHHHHhhhhhccc
Q 012911 186 TAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPN-AMFQATRIFS---SNL---NAKKAERFYKLVLLPRIRDDIRKNKKL 258 (453)
Q Consensus 186 rSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~-A~y~aTriF~---Snl---~~~~aqrF~~~VLLprvredI~e~KkL 258 (453)
....||-.|.+=-++..+.++|. .+++. ..-.+.||-. -+| |-..-++||. |||-+|-.-.......
T Consensus 414 ~~~elPftf~~P~s~eel~~lL~-----~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~-vLlq~i~~la~~~~~~ 487 (840)
T PF04147_consen 414 AKSELPFTFPCPSSHEELLELLD-----GYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFG-VLLQHILYLASQDSPP 487 (840)
T ss_pred cccCCCceecCCCCHHHHHHHHh-----cCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHH-HHHHHHHHHhcccCCc
Confidence 45678888875444545555554 33332 2223344444 444 4455677775 5889988866666578
Q ss_pred cHHHHHHHHHhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhc-------cCCCcccHHHHHHHHhcc---------
Q 012911 259 HFALYQALKKSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEK-------ISIPMLHSSVALLKLAEM--------- 322 (453)
Q Consensus 259 n~hLy~ALkKalyKP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K-------~SiPvlHsaaaL~kl~~~--------- 322 (453)
++-+.+.|.+-||.=+.. +|.+.+. |-...-.-+..-+.+ .+.|-+ +-..+++|..+
T Consensus 488 ~~~~ld~L~~~L~~Laq~-----~p~~~a~-~~r~~L~~~~~~~~~~~l~~~~~~~P~l-~~Lvllklv~~lFPTSD~~H 560 (840)
T PF04147_consen 488 PFEVLDSLIPHLYDLAQK-----YPEEAAE-CFREVLKEMQKRFRKGALKPKERSWPSL-SDLVLLKLVGTLFPTSDFRH 560 (840)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHhhhcccccCCCCCCh-hHHHHHHHHHHhcCcccccC
Confidence 888888887776653322 2322211 111111111111221 124444 33445555444
Q ss_pred cCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 012911 323 EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLK 396 (453)
Q Consensus 323 ~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~ 396 (453)
|-.-|+-+||.-+|..- |++-+..+.. -++-=+|+.-+|++..-+.+|=-..|..+|.
T Consensus 561 pVVTPalllm~~~L~q~---~v~s~~di~~-------------GlfL~~l~l~y~~~SKR~vPEvinFL~~~L~ 618 (840)
T PF04147_consen 561 PVVTPALLLMSEYLSQC---RVRSLRDIAS-------------GLFLCTLLLEYQSLSKRFVPEVINFLLGLLL 618 (840)
T ss_pred cchhHHHHHHHHHHhcC---CCCCHHHHHH-------------HHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 22345666666666542 2222222211 1233455555666666677777777766664
No 24
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.48 E-value=38 Score=38.68 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=8.9
Q ss_pred ChHHHHHHHHHHHHHhhc
Q 012911 168 DESFINLYKGVGEFLSKY 185 (453)
Q Consensus 168 ~pkVvevY~~vG~~Ls~Y 185 (453)
|..+-++=..++.+.+.-
T Consensus 731 De~m~~lD~~La~~Fk~r 748 (784)
T PF04931_consen 731 DEQMMALDEQLAAIFKER 748 (784)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344454445555555444
No 25
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=24.14 E-value=1.6e+02 Score=28.58 Aligned_cols=67 Identities=15% Similarity=0.417 Sum_probs=34.2
Q ss_pred HhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcC----HHH-----------------HHHHHHHH
Q 012911 337 EKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQ----KED-----------------KDDLRILL 395 (453)
Q Consensus 337 dKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls----~eq-----------------k~~L~~Ll 395 (453)
.+.+.++...|.++|.-| ++.... -|+-||+.+.| ++| |+.++..+
T Consensus 2 a~el~i~~~~v~~~i~Ll----~eG~Tv---------PFIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~~i 68 (193)
T PF09371_consen 2 AEELNIKPKQVENVIKLL----DEGNTV---------PFIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILKSI 68 (193)
T ss_dssp -------HHHHHHHHHHH----HTT--H---------HHHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHH----hCCCCc---------chhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888754 234443 47788887654 333 34455555
Q ss_pred HhCCCCCCCHHHHHHHhhcCCCC
Q 012911 396 KKQKHKLVTPEIIRELDSSRNRG 418 (453)
Q Consensus 396 ~~~~H~~ItpEIrreL~~~~~R~ 418 (453)
..++ ..|||++..|.+...-.
T Consensus 69 ~eqg--kLt~eL~~~I~~a~tl~ 89 (193)
T PF09371_consen 69 EEQG--KLTPELKQAIENATTLQ 89 (193)
T ss_dssp HHTT-----HHHHHHHHH--SHH
T ss_pred HHcc--cCCHHHHHHHHhcCCHH
Confidence 5554 47999999999877643
No 26
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=21.57 E-value=51 Score=29.41 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=4.6
Q ss_pred CCChHHHHHH
Q 012911 166 KLDESFINLY 175 (453)
Q Consensus 166 ~l~pkVvevY 175 (453)
.|+.+|.-+|
T Consensus 64 ~id~~v~shi 73 (101)
T PF09026_consen 64 PIDDKVQSHI 73 (101)
T ss_dssp ---HHHHHHH
T ss_pred chhHhhhhhh
Confidence 3666766665
No 27
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=20.41 E-value=7.1e+02 Score=29.47 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=89.7
Q ss_pred cccccCC----CchHHHHHhhcCCCCCchhHHHHhHH-HhhcCCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHH
Q 012911 193 AFKHIPS----TQMWEQVLYLTEPEKWTPNAMFQATR-IFSSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALK 267 (453)
Q Consensus 193 aFKiiP~----l~nWEeiL~lT~P~~WSp~A~y~aTr-iF~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALk 267 (453)
+|.+|-+ +..||-||-|.=+.+=- .++.+ |-..-|+++....||.++.+--+.-+=+-.+.+-|.+|.-++
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~~Q~----rEI~~VllhC~l~EK~yNpfYa~lA~KfCe~~~~~~~tfQF~~WD~f~ 699 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKGKQE----REIARVLLHCCLNEKTYNPFYALLALKFCEFNKNLKKTFQFALWDRFK 699 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCCcch----HHHHHHHHHHHhhhcccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556655 55788888777666433 33333 344556777777888887776665444444444455554444
Q ss_pred HhhcCchhhhhhhhcccccCCCcchhHHHHHHHHHhcc--CCCcccHHHHHHHHhcccCCchHHHHHH-HHHHhhhcCcH
Q 012911 268 KSLYKPAAFNKGILFPLCKSGTCNLREAVIIGSVIEKI--SIPMLHSSVALLKLAEMEYCGTTSYFIK-LLLEKKYGLPY 344 (453)
Q Consensus 268 KalyKP~AFfkGil~PL~~sg~CTlrEA~IigSVl~K~--SiPvlHsaaaL~kl~~~~~sg~~s~Flr-~LLdKKYaLPy 344 (453)
.-= + +|+...++ -|..++++|.-- |+.||..--. |.-+-...+|++ +|++=-.+-+
T Consensus 700 ele--~--------ls~~ri~n----La~l~a~Li~~~~lsLtVLK~Vdf------m~l~~~~~~fl~~~l~~l~l~~~- 758 (822)
T KOG2141|consen 700 ELE--Q--------LSLFRISN----LAKLLASLISNAVLSLTVLKHVDF------MELNARRTTFLKKLLFGLILEPE- 758 (822)
T ss_pred Hhh--h--------cchhhHhH----HHHHHHHHHHhcccceeeeeeccH------hhcChHHHHHHHHHHHHHHhcch-
Confidence 311 1 34443332 578888888765 3444432221 134455667777 4444444444
Q ss_pred HHHHHHHHHHHhhhccCC------CcchHHHHHHHHHHHH
Q 012911 345 RVVDAIVAHFMRFLEDTR------VMPVIWHQSLLAFVQR 378 (453)
Q Consensus 345 rviDalV~hFlrF~~~~~------~lPVlWHQslL~Fvqr 378 (453)
++.+..-|.|+...+. .+-+.||.-|+-+.|-
T Consensus 759 --~~~v~~~ftr~~kn~k~~~l~~gvk~F~~~~l~kn~~~ 796 (822)
T KOG2141|consen 759 --EKDVFQLFTRVAKNTKLELLSEGVKWFLKHYLRKNNQL 796 (822)
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 6778888888887643 2344455555544443
No 28
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=20.25 E-value=55 Score=41.55 Aligned_cols=12 Identities=67% Similarity=1.157 Sum_probs=6.4
Q ss_pred hhhcccc-cCCCc
Q 012911 279 GILFPLC-KSGTC 290 (453)
Q Consensus 279 Gil~PL~-~sg~C 290 (453)
|||||=- .|.||
T Consensus 468 gi~fpe~~ksttc 480 (2849)
T PTZ00415 468 GILFPEGIKSTSC 480 (2849)
T ss_pred ceeccCCCcccch
Confidence 5666643 34444
No 29
>PF13551 HTH_29: Winged helix-turn helix
Probab=20.21 E-value=2.5e+02 Score=22.93 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred HHHHHH--HHHh-hcccCCCCccccccCCCchHHHHHhhcCC----CCCchhHHHH--hHHHhhcCCChHHHHHHHH
Q 012911 174 LYKGVG--EFLS-KYTAGKMPKAFKHIPSTQMWEQVLYLTEP----EKWTPNAMFQ--ATRIFSSNLNAKKAERFYK 241 (453)
Q Consensus 174 vY~~vG--~~Ls-~YrSGKLPKaFKiiP~l~nWEeiL~lT~P----~~WSp~A~y~--aTriF~Snl~~~~aqrF~~ 241 (453)
-|..-| .++. ++++|.-++. +=|....+=.=+.-++| ..||+..+-. +.+-|.-.++.....|++.
T Consensus 35 ~~~~~G~~~l~~~~~~~g~~~~~--l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~ 109 (112)
T PF13551_consen 35 RYREGGIEGLLPRKPRGGRPRKR--LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILK 109 (112)
T ss_pred HHHcccHHHHHhccccCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHH
Confidence 344444 4555 4555554443 44444454444455666 3699998876 3566666667776666653
No 30
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=20.20 E-value=3.4e+02 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhC
Q 012911 368 WHQSLLAFVQRYKNELQKEDKDDLRILLKKQ 398 (453)
Q Consensus 368 WHQslL~FvqrYk~dls~eqk~~L~~Ll~~~ 398 (453)
-+..|+.|++.-|..=+.-|.+.++.+++..
T Consensus 271 ~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~ 301 (330)
T PF11707_consen 271 NNKLLLNLLKKLKPWEDDRQQELVLKILKAC 301 (330)
T ss_pred ccHHHHHHHHHCCCCccHHHHHHHHHHHHHC
Confidence 3788999999999988999999999999764
Done!