Query 012911
Match_columns 453
No_of_seqs 128 out of 223
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 18:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ilr_A Protein FACE, fanconi a 98.6 2.7E-06 9.4E-11 83.2 18.8 180 214-397 63-246 (264)
2 1abv_A Delta subunit of the F1 32.6 53 0.0018 27.3 4.7 88 300-399 45-132 (134)
3 3ech_A MEXR, multidrug resista 21.4 2.8E+02 0.0095 22.2 7.0 103 289-397 34-137 (142)
4 2lm4_A Succinate dehydrogenase 21.0 1E+02 0.0035 26.3 4.4 37 372-413 42-78 (109)
5 3m03_A ORC6, origin recognitio 18.3 21 0.00073 30.0 -0.5 43 174-227 18-60 (95)
6 4gco_A Protein STI-1; structur 16.8 2.4E+02 0.0081 22.2 5.5 69 165-244 6-74 (126)
7 2h5n_A Hypothetical protein PG 15.4 4.5E+02 0.015 22.1 7.2 59 323-396 34-92 (133)
8 3k2a_A Homeobox protein MEIS2; 15.0 1.9E+02 0.0066 21.7 4.3 34 382-415 4-38 (67)
9 2zc2_A DNAD-like replication p 14.3 2.4E+02 0.0082 21.4 4.7 41 370-413 4-45 (78)
10 2ilr_A Protein FACE, fanconi a 14.2 5E+02 0.017 25.3 7.9 90 289-401 46-159 (264)
No 1
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=98.59 E-value=2.7e-06 Score=83.16 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=153.2
Q ss_pred CCchhHHHHhHHHhhc---CCChHHHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcC-chhhhhhhhcccccCCC
Q 012911 214 KWTPNAMFQATRIFSS---NLNAKKAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYK-PAAFNKGILFPLCKSGT 289 (453)
Q Consensus 214 ~WSp~A~y~aTriF~S---nl~~~~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyK-P~AFfkGil~PL~~sg~ 289 (453)
+-|..++++....+.| -++-..|--|....+||+++.- +..-.-+|..|+.--.-| |.||..|+++||+..+.
T Consensus 63 ~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L---~~~ASR~L~sal~~f~k~~p~a~~~all~PLL~~~~ 139 (264)
T 2ilr_A 63 QLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSL---TSSASRLLTTALTSFAAKYTYPVCSALLDPVLQAPG 139 (264)
T ss_dssp GCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHC---SSCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 6788899998886666 4667889999999999999988 677788888888766544 99999999999998776
Q ss_pred cchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHH
Q 012911 290 CNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWH 369 (453)
Q Consensus 290 CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWH 369 (453)
-..-.+-+|..+|.--++++.|.+..+-.+-+.+|+-.+...+..+|++|-.|.-..++.+|..+..-...-.. -..+-
T Consensus 140 ~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk-SlkFa 218 (264)
T 2ilr_A 140 TGPAQTELLCCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT-SMAYA 218 (264)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC-SHHHH
T ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc-ccHHH
Confidence 67788889999998677999999999999999999999999999999999999999999999988754433222 46799
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012911 370 QSLLAFVQRYKNELQKEDKDDLRILLKK 397 (453)
Q Consensus 370 QslL~FvqrYk~dls~eqk~~L~~Ll~~ 397 (453)
+-+|+|+..|...|++.|+..|...+..
T Consensus 219 kLll~~itky~~~i~~~~~~~L~~~l~~ 246 (264)
T 2ilr_A 219 KLMLTVMTKYQANITETQRLGLAMALEP 246 (264)
T ss_dssp HHHHHHHHHTGGGCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999999888888743
No 2
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=32.60 E-value=53 Score=27.34 Aligned_cols=88 Identities=7% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHh
Q 012911 300 SVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRY 379 (453)
Q Consensus 300 SVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrY 379 (453)
.+|. -.||.-.-...|..++.-..+..+.-||++|++++-- ..+..++..|....+..+.. ..+-| ..
T Consensus 45 ~~l~-P~i~~~~K~~~l~~~~~~~~~~~~~nfl~ll~~~~Rl---~~l~~I~~~f~~l~~~~~~~-------~~a~V-~S 112 (134)
T 1abv_A 45 ELLS-GALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRL---NALPDVLEQFIHLRAVSEAT-------AEVDV-IS 112 (134)
T ss_dssp HHHT-CSSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHTTCG---GGHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHC-ccCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHCCcH---HHHHHHHHHHHHHHHHHCCe-------eEEEE-Ee
Confidence 3444 4455544556666776655666777899999998842 34455555555544432110 00000 12
Q ss_pred hhhcCHHHHHHHHHHHHhCC
Q 012911 380 KNELQKEDKDDLRILLKKQK 399 (453)
Q Consensus 380 k~dls~eqk~~L~~Ll~~~~ 399 (453)
-..||++|++.|.+.|.+..
T Consensus 113 A~~Ls~~q~~~l~~~L~~~~ 132 (134)
T 1abv_A 113 AAALSEQQLAKISAAMEKRL 132 (134)
T ss_dssp --------------------
T ss_pred cCCCCHHHHHHHHHHHHHHh
Confidence 23789999999988876543
No 3
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=21.39 E-value=2.8e+02 Score=22.21 Aligned_cols=103 Identities=10% Similarity=0.003 Sum_probs=56.9
Q ss_pred CcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccCCchHHHHHHHHHHhhhcCcHHHH-HHHHHHHHhhhccCCCcchH
Q 012911 289 TCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEYCGTTSYFIKLLLEKKYGLPYRVV-DAIVAHFMRFLEDTRVMPVI 367 (453)
Q Consensus 289 ~CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~sg~~s~Flr~LLdKKYaLPyrvi-DalV~hFlrF~~~~~~lPVl 367 (453)
+.|..+..|+..+-..-.+.+- -|-....++ .++.|-.|..|.+++|---.+-- |.=. ..+......+.+---
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~----eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~DrR~-~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQ----DLGRQMCRD-KALITRKIRELEGRNLVRRERNPSDQRS-FQLFLTDEGLAIHLH 107 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHH----HHHHHHC----CHHHHHHHHHHHTTSEEC-----------CCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCHH----HHHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCCCCe-eeeEECHHHHHHHHH
Confidence 3778888888777664433332 222333333 46778889999999886532211 1110 111111222222233
Q ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012911 368 WHQSLLAFVQRYKNELQKEDKDDLRILLKK 397 (453)
Q Consensus 368 WHQslL~FvqrYk~dls~eqk~~L~~Ll~~ 397 (453)
+.+.+-.+.+..-..+++++.+.|..++.+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (142)
T 3ech_A 108 AELIMSRVHDELFAPLTPVEQATLVHLLDQ 137 (142)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566666777788999999999998864
No 4
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=20.98 E-value=1e+02 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhh
Q 012911 372 LLAFVQRYKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 413 (453)
Q Consensus 372 lL~FvqrYk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~ 413 (453)
|-.|+++|-..+|.+|...+-.||... .++|-.=+..
T Consensus 42 L~~F~~~~~~~ls~~el~~f~~LL~~~-----D~DL~~wl~g 78 (109)
T 2lm4_A 42 LSGFAAKYLKKMNEEELEEYDSLLNEL-----DWDIYYWATK 78 (109)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTSC-----HHHHHHHHTT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHcCC-----CHHHHHHHhC
Confidence 449999999999999999999888532 4555554443
No 5
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=18.33 E-value=21 Score=30.03 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHh
Q 012911 174 LYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIF 227 (453)
Q Consensus 174 vY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF 227 (453)
+-..+-.+|.+|+ ..||..=+ .=+.+++|. +++.|+|+|.|+-
T Consensus 18 ~~~~a~~lL~~Yk-~~l~~~~~---------~~~D~s~P~-f~aaA~~~acr~~ 60 (95)
T 3m03_A 18 AVNMASKILKSYE-SSLPQTQQ---------VDLDLSRPL-FTSAALLSACKIL 60 (95)
T ss_dssp GHHHHHHHHHHHH-TTSCHHHH---------HHCCTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHhHHHhh---------ccccccccH-HHHHHHHHHHHHH
Confidence 3456778999999 33442211 346788886 9999999999964
No 6
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=16.77 E-value=2.4e+02 Score=22.20 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCChHHHHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHHhh
Q 012911 165 PKLDESFINLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKLVL 244 (453)
Q Consensus 165 ~~l~pkVvevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~~~aqrF~~~VL 244 (453)
..|||...+.|...|..+ |+.|+..+|++ .++..|.+ +|.. +.+.+.--.++...=+-..|...|+.+|
T Consensus 6 a~inP~~a~~~~~~G~~~--~~~g~~~~A~~------~~~~al~~-~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEY--FKKGDYPTAMR------HYNEAVKR-DPEN--AILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp -CCCHHHHHHHHHHHHHH--HHTTCHHHHHH------HHHHHHHH-CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHH--HHcCCHHHHHH------HHHHHHHh-CCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 369999999999999875 78999998865 57777776 3654 4555555555655557777777777665
No 7
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=15.41 E-value=4.5e+02 Score=22.10 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=38.5
Q ss_pred cCCchHHHHHHHHHHhhhcCcHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 012911 323 EYCGTTSYFIKLLLEKKYGLPYRVVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLK 396 (453)
Q Consensus 323 ~~sg~~s~Flr~LLdKKYaLPyrviDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~ 396 (453)
.++..---+++.++.+ |.|+-.-.+.+..+|-.+ ..-.+++.+ ..++.++|..+++.+=
T Consensus 34 ~v~~~E~~~l~~~l~~-lgl~~~e~~~l~~~~~~~-------------~~~~~~~~~-~~~~~e~r~~ll~~L~ 92 (133)
T 2h5n_A 34 KIKPAEIAVMTREFMR-FGILQDQVDLLLKASDSI-------------EASQAVALI-ARMDEERKKYVASYLG 92 (133)
T ss_dssp CCCHHHHHHHHHHHGG-GTCCHHHHHHHHHHHTTS-------------CHHHHHHHH-HTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHhc-------------cHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 3666777788888888 899988888888877311 111223333 3367888777776653
No 8
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=15.02 E-value=1.9e+02 Score=21.67 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.7
Q ss_pred hcCHHHHHHHHHHHHhC-CCCCCCHHHHHHHhhcC
Q 012911 382 ELQKEDKDDLRILLKKQ-KHKLVTPEIIRELDSSR 415 (453)
Q Consensus 382 dls~eqk~~L~~Ll~~~-~H~~ItpEIrreL~~~~ 415 (453)
-+|.+|+..|...+..| .|+-.|++.+.+|....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~ 38 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT 38 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 47999999999999866 56678999999987654
No 9
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=14.28 E-value=2.4e+02 Score=21.44 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhh-hcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhh
Q 012911 370 QSLLAFVQRYKN-ELQKEDKDDLRILLKKQKHKLVTPEIIRELDS 413 (453)
Q Consensus 370 QslL~FvqrYk~-dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~ 413 (453)
+.|+.|+|++.+ .+|+-+.+.|..++.. ...+||+..++..
T Consensus 4 ~~l~~~~e~~~gr~ls~~e~~~i~~w~~~---~~~~~elI~~A~~ 45 (78)
T 2zc2_A 4 NALVEDFERELGRMLSPFELEDLQKTVSD---DKTDPDLVRSALR 45 (78)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHTT---TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHH---hCCCHHHHHHHHH
No 10
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=14.16 E-value=5e+02 Score=25.28 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHhccCCCcccHHHHHHHHhcccC---CchHHHHHHHHHHhh--------------------hcCcHH
Q 012911 289 TCNLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY---CGTTSYFIKLLLEKK--------------------YGLPYR 345 (453)
Q Consensus 289 ~CTlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~---sg~~s~Flr~LLdKK--------------------YaLPyr 345 (453)
+|+.++--.+.+-|.-.+++=--.......+..+.+ .+..++|++.|+=-| -+.|+-
T Consensus 46 ~~sp~q~e~lc~~L~l~~lsd~~l~~lc~~ll~ls~dlS~~~a~v~~~~l~LPkil~L~~~ASR~L~sal~~f~k~~p~a 125 (264)
T 2ilr_A 46 ECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNATVLTRSLFLGRILSLTSSASRLLTTALTSFAAKYTYP 125 (264)
T ss_dssp GCCHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHSHHH
T ss_pred hCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhCcHH
Q ss_pred HHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH-hCCCC
Q 012911 346 VVDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLK-KQKHK 401 (453)
Q Consensus 346 viDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~-~~~H~ 401 (453)
++|+++. |++|- ..+...|.+.|..+++ .-.|+
T Consensus 126 ~~~all~------------PLL~~-----------~~~g~~Q~eLi~rlik~e~l~p 159 (264)
T 2ilr_A 126 VCSALLD------------PVLQA-----------PGTGPAQTELLCCLVKMESLEP 159 (264)
T ss_dssp HHHHHHH------------HHHHS-----------TTCCHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHH------------HHHcC-----------CCCCHHHHHHHHHHHHhccCCH
Done!