Query 012911
Match_columns 453
No_of_seqs 128 out of 223
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 18:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lkja_ a.39.1.5 (A:) Calmodul 56.7 25 0.0018 27.0 8.4 120 228-354 1-128 (146)
2 d1le8a_ a.4.1.1 (A:) Mating ty 39.6 15 0.0011 25.4 3.9 34 381-416 2-35 (53)
3 d1jgga_ a.4.1.1 (A:) Even-skip 36.6 9.8 0.00071 26.8 2.5 36 379-416 2-37 (57)
4 d1fx0a1 a.69.1.1 (A:373-501) F 33.4 36 0.0026 27.3 5.9 84 166-270 30-122 (129)
5 d1pbya1 a.3.1.7 (A:1-85) Quino 26.1 24 0.0017 26.8 3.3 34 365-398 33-66 (85)
6 d2hk6a1 c.92.1.1 (A:2-310) Fer 24.4 50 0.0036 29.8 5.8 68 347-419 18-107 (309)
7 d1okra_ a.4.5.39 (A:) Methicil 21.3 1.6E+02 0.011 22.1 8.4 98 291-397 6-119 (120)
8 d1ukwa2 e.6.1.1 (A:32-258) Med 19.8 1.3E+02 0.0095 24.3 7.2 66 235-307 15-81 (227)
9 d1ngka_ a.1.1.1 (A:) Protozoan 19.3 1.7E+02 0.013 21.9 8.6 33 382-414 77-113 (126)
10 d2jdia1 a.69.1.1 (A:380-510) F 18.4 80 0.0058 25.0 5.3 84 166-270 30-122 (131)
No 1
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.66 E-value=25 Score=26.95 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=74.6
Q ss_pred hcCCChHHHHHHHHHhhhHHHHHhhhhhccccHH-HHHHHHHhhcCchhhh-hhhhccccc--CCCcchhHHHHHHHHHh
Q 012911 228 SSNLNAKKAERFYKLVLLPRIRDDIRKNKKLHFA-LYQALKKSLYKPAAFN-KGILFPLCK--SGTCNLREAVIIGSVIE 303 (453)
Q Consensus 228 ~Snl~~~~aqrF~~~VLLprvredI~e~KkLn~h-Ly~ALkKalyKP~AFf-kGil~PL~~--sg~CTlrEA~IigSVl~ 303 (453)
+|||++.+.+.|-...-+ =|...+.+|++. +..+|...-+.|.... ..++.-.+. .++++..+...+-+
T Consensus 1 ~~~ls~~~i~~l~~~F~~----~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (146)
T d1lkja_ 1 SSNLTEEQIAEFKEAFAL----FDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMS--- 73 (146)
T ss_dssp CCCCCHHHHHHHHHHHHH----HCCSSSSEEEHHHHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHH---
T ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCcEeHHHHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHH---
Confidence 589999999887332211 277888899987 6666777767765432 233333332 33455555444332
Q ss_pred ccCCCccc--HHHHHHHHhcccCCchHHH--HHHHHHHhhhcCcHHHHHHHHHHH
Q 012911 304 KISIPMLH--SSVALLKLAEMEYCGTTSY--FIKLLLEKKYGLPYRVVDAIVAHF 354 (453)
Q Consensus 304 K~SiPvlH--saaaL~kl~~~~~sg~~s~--Flr~LLdKKYaLPyrviDalV~hF 354 (453)
........ -.....+..+..-+|.-+. |.++|-.=.+.++-..++.++.+|
T Consensus 74 ~~~~~~~~~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (146)
T d1lkja_ 74 RQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 128 (146)
T ss_dssp HHTCCCCHHHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHTCSCCHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCcccHHHHHHHHHhc
Confidence 22222221 2344566777788885444 888888888999999999988866
No 2
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.59 E-value=15 Score=25.36 Aligned_cols=34 Identities=6% Similarity=0.201 Sum_probs=27.9
Q ss_pred hhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCC
Q 012911 381 NELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN 416 (453)
Q Consensus 381 ~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~ 416 (453)
.-||++|+..|-......++ .+.+-+.+|....+
T Consensus 2 t~~s~~q~~~Le~~F~~~~~--P~~~~~~~LA~~lg 35 (53)
T d1le8a_ 2 SSISPQARAFLEQVFRRKQS--LNSKEKEEVAKKCG 35 (53)
T ss_dssp CCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHC
Confidence 46899999999999987655 58999999987653
No 3
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=36.57 E-value=9.8 Score=26.75 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.3
Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCCCHHHHHHHhhcCC
Q 012911 379 YKNELQKEDKDDLRILLKKQKHKLVTPEIIRELDSSRN 416 (453)
Q Consensus 379 Yk~dls~eqk~~L~~Ll~~~~H~~ItpEIrreL~~~~~ 416 (453)
++.-+|++|.+.|..+....+| .+++-|.+|....+
T Consensus 2 ~Rt~fT~~Ql~~Le~~F~~~~y--p~~~~r~~LA~~lg 37 (57)
T d1jgga_ 2 YRTAFTRDQLGRLEKEFYKENY--VSRPRRCELAAQLN 37 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSC--CCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHhC
Confidence 4567899999999999988666 48999999886543
No 4
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=33.36 E-value=36 Score=27.27 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCChHH---HHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHH
Q 012911 166 KLDESF---INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 242 (453)
Q Consensus 166 ~l~pkV---vevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~~~aqrF~~~ 242 (453)
.||+.. ++--+++-.+|+-=.- -.++-+++++ -+|++|+-|.-+++.....+|=+.
T Consensus 30 dlD~~t~~~l~rG~rl~ElLKQ~q~----------~Pl~v~eQv~-----------iLyA~~~G~LD~ipv~~I~~fe~~ 88 (129)
T d1fx0a1 30 DLDKATQNQLARGQRLRELLKQPQS----------APLTVEEQVM-----------TIYTGTNGYLDSLELDQVRKYLVE 88 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCCTT----------CCCCHHHHHH-----------HHHHHHTTSSSSSCHHHHHHHHHH
T ss_pred chhHHHHHhhhHHHHHHHHHHcccc----------cCCCHHHHHH-----------HHHHHHcCccccCCHHHHHHHHHH
Confidence 577666 4445677777764332 2345677776 469999999999999999998555
Q ss_pred hh------hHHHHHhhhhhccccHHHHHHHHHhh
Q 012911 243 VL------LPRIRDDIRKNKKLHFALYQALKKSL 270 (453)
Q Consensus 243 VL------LprvredI~e~KkLn~hLy~ALkKal 270 (453)
++ .|-+.+.|.++++|+--+=..|++++
T Consensus 89 ll~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i 122 (129)
T d1fx0a1 89 LRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAI 122 (129)
T ss_dssp HHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44 37889999999999988888888775
No 5
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=26.07 E-value=24 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhC
Q 012911 365 PVIWHQSLLAFVQRYKNELQKEDKDDLRILLKKQ 398 (453)
Q Consensus 365 PVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~~~ 398 (453)
+--|...+..-++.|...|+++++..+.+-|-.+
T Consensus 33 ~~~W~~~V~~M~~~~Ga~l~~~e~~~Iv~YLa~~ 66 (85)
T d1pbya1 33 PEGWDMTVTRMMRNHGVALEPEERAAIVRHLSDT 66 (85)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999998763
No 6
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]}
Probab=24.42 E-value=50 Score=29.84 Aligned_cols=68 Identities=10% Similarity=0.270 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhhccCCCcchHHHHHHHHHHHHhh--------hhcCHHHHHHHHHHHHh--------------CCCCCCC
Q 012911 347 VDAIVAHFMRFLEDTRVMPVIWHQSLLAFVQRYK--------NELQKEDKDDLRILLKK--------------QKHKLVT 404 (453)
Q Consensus 347 iDalV~hFlrF~~~~~~lPVlWHQslL~FvqrYk--------~dls~eqk~~L~~Ll~~--------------~~H~~It 404 (453)
.++|..|+-.|..+.+.+|-+|.. ..++|+ +.+|..|.++|-+.|.. ..||.|
T Consensus 18 ~~dV~~yL~~~~~dr~~~~~~~~~----~~~~Y~~igg~SPL~~~t~~qa~~L~~~L~~~~~~~~~~v~~amry~~P~i- 92 (309)
T d2hk6a1 18 EEDIERYYTHIRRGRKPEPEMLQD----LKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFI- 92 (309)
T ss_dssp GGGHHHHHHHHTTTCCCCHHHHHH----HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEESSSSSBH-
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHH----HHHHHHHhCCCChHHHHHHHHHHHHHHHHhhcCCCceEEEEEecccccccH-
Confidence 367778888888998888888854 368898 67889999999887753 345555
Q ss_pred HHHHHHHhhcCCCCC
Q 012911 405 PEIIRELDSSRNRGE 419 (453)
Q Consensus 405 pEIrreL~~~~~R~~ 419 (453)
.++.++|.+..++..
T Consensus 93 ~~~l~~l~~~g~~~i 107 (309)
T d2hk6a1 93 EDAVAEMHKDGITEA 107 (309)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCCccc
Confidence 677788887666543
No 7
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=21.33 E-value=1.6e+02 Score=22.12 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHhccCCCcccHHHHHHHHhcccC-CchHHHHHHHHHHhhhcCc---------------HHHHHHHHHHH
Q 012911 291 NLREAVIIGSVIEKISIPMLHSSVALLKLAEMEY-CGTTSYFIKLLLEKKYGLP---------------YRVVDAIVAHF 354 (453)
Q Consensus 291 TlrEA~IigSVl~K~SiPvlHsaaaL~kl~~~~~-sg~~s~Flr~LLdKKYaLP---------------yrviDalV~hF 354 (453)
|..|-.|+..+=..-.+.+--...+|-. ..++ .++.+-+|..|.+|.|--- -+.+..++.-|
T Consensus 6 t~~E~~VM~~lW~~~~~t~~ei~~~l~~--~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~~~Y~~~~~~~~~~~~~~~~~ 83 (120)
T d1okra_ 6 SSAEWEVMNIIWMKKYASANNIIEEIQM--QKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNF 83 (120)
T ss_dssp CHHHHHHHHHHHHHSSEEHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhc--ccCccHHhHHHHHHHHHHCCCeEEEecCCceEEeecCCHHHHHHHHHHHH
Confidence 4445555555444443333222222222 1233 2367789999999987632 22233333333
Q ss_pred HhhhccCCCcchHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHh
Q 012911 355 MRFLEDTRVMPVIWHQSLLAFVQRYKNELQKEDKDDLRILLKK 397 (453)
Q Consensus 355 lrF~~~~~~lPVlWHQslL~FvqrYk~dls~eqk~~L~~Ll~~ 397 (453)
+...-+....+++ ..|+.. ..||+++.+.|.++|.+
T Consensus 84 ~~~~~~~~~~~~~-----~~~~~~--~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 84 INKVYKGGFNSLV-----LNFVEK--EDLSQDEIEELRNILNK 119 (120)
T ss_dssp HHHHSTTCHHHHH-----HHHHHH--SCCCHHHHHHHHHHHTC
T ss_pred HHHHHcccHHHHH-----HHHHHc--cCCCHHHHHHHHHHHhc
Confidence 3322223222222 345553 68999999999999865
No 8
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Probab=19.85 E-value=1.3e+02 Score=24.35 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhHHHHHhhhhhccccHHHHHHHHHhhcCchhhhhhhhcccccCC-CcchhHHHHHHHHHhccCC
Q 012911 235 KAERFYKLVLLPRIRDDIRKNKKLHFALYQALKKSLYKPAAFNKGILFPLCKSG-TCNLREAVIIGSVIEKISI 307 (453)
Q Consensus 235 ~aqrF~~~VLLprvredI~e~KkLn~hLy~ALkKalyKP~AFfkGil~PL~~sg-~CTlrEA~IigSVl~K~Si 307 (453)
.+++|..-.+.|+.++ +.+...+...+|++|..+=| -|+.+|=.-.| ..++.++.++...+.+++.
T Consensus 15 ~~r~f~~~~~~p~a~~-~d~~~~~p~~~~~~l~~~G~------~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~ 81 (227)
T d1ukwa2 15 LARRFAKEVILPVAQE-YDEKEEVPWPVIEKLHEVGL------LNAIIPEEYGGMGLKMLDEVIVGEELAYACM 81 (227)
T ss_dssp HHHHHHHHTTGGGHHH-HHHHTCCCHHHHHHHHHTTC------TTTTSCGGGTSCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhChHHHHH-HHhcCCCCHHHHHHHHhhhh------hhhccccccCcccccccccccchhhhccccc
Confidence 4778888889997754 77888999999999987632 26667755433 4667777777777766553
No 9
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=19.32 E-value=1.7e+02 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=24.3
Q ss_pred hcCHHHHHHHHHHHH----hCCCCCCCHHHHHHHhhc
Q 012911 382 ELQKEDKDDLRILLK----KQKHKLVTPEIIRELDSS 414 (453)
Q Consensus 382 dls~eqk~~L~~Ll~----~~~H~~ItpEIrreL~~~ 414 (453)
.|++++.++-+.++. ...+..++++.+.+|.+.
T Consensus 77 ~I~~~~fd~wl~~~~~al~~~~~~~~~~~~~~~l~~~ 113 (126)
T d1ngka_ 77 RISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDY 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 588999887766643 446778899988887643
No 10
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.40 E-value=80 Score=25.03 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCChHH---HHHHHHHHHHHhhcccCCCCccccccCCCchHHHHHhhcCCCCCchhHHHHhHHHhhcCCChHHHHHHHHH
Q 012911 166 KLDESF---INLYKGVGEFLSKYTAGKMPKAFKHIPSTQMWEQVLYLTEPEKWTPNAMFQATRIFSSNLNAKKAERFYKL 242 (453)
Q Consensus 166 ~l~pkV---vevY~~vG~~Ls~YrSGKLPKaFKiiP~l~nWEeiL~lT~P~~WSp~A~y~aTriF~Snl~~~~aqrF~~~ 242 (453)
.||+.. ++--+++-.+|+-=..-+ ++-+|+++ -+|++|+-|.-++......+|=+.
T Consensus 30 dlD~~t~~~l~rG~rl~ElLKQ~q~~P----------l~v~eQv~-----------iL~A~~~G~lD~i~v~~I~~fe~~ 88 (131)
T d2jdia1 30 DLDAATQQLLSRGVRLTELLKQGQYSP----------MAIEEQVA-----------VIYAGVRGYLDKLEPSKITKFENA 88 (131)
T ss_dssp SSCHHHHHHHHHHHHHHHHTCCCSSCC----------CCHHHHHH-----------HHHHHHTTTTTTSCGGGHHHHHHH
T ss_pred hhhHHHHhhhhhHHHHHHHHhcccccc----------hhHHHHHH-----------HHHHHhcCCccccCHHHHHHHHHH
Confidence 566665 455677777776433322 34566665 469999999999999998887544
Q ss_pred hh------hHHHHHhhhhhccccHHHHHHHHHhh
Q 012911 243 VL------LPRIRDDIRKNKKLHFALYQALKKSL 270 (453)
Q Consensus 243 VL------LprvredI~e~KkLn~hLy~ALkKal 270 (453)
.+ .|-+.+.|.+.++|+--+=..|++++
T Consensus 89 ll~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai 122 (131)
T d2jdia1 89 FLSHVISQHQALLGKIRTDGKISEESDAKLKEIV 122 (131)
T ss_dssp HHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33 57789999999999988888888876
Done!