BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012912
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FO8|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 343
Score = 248 bits (632), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 198/328 (60%), Gaps = 9/328 (2%)
Query: 122 CNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKLTYMQHLDFEPV 180
C+R+ + R ++ + Y+ S A +P+ VSQD + + SY +T+++ D +
Sbjct: 11 CDRST-VRRCLDKLLHYRPS-AELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNI 68
Query: 181 HADNPG--ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL 238
A P + YYKIARHY+WAL +F+ N+ +++EDD+E+APDFF+YF+A LL
Sbjct: 69 -AVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLL 127
Query: 239 DKDKSIMAVSSWNDNGQKQFVHD--PYVLYRSDFFPGLGWMLTRTTWDELSPKWPKAYWD 296
D S+ VS+WNDNG++Q V P +LYR+DFFPGLGW+L W EL PKWPKA+WD
Sbjct: 128 KADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWD 187
Query: 297 DWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPVDWKSRDLSYL 356
DW+R E KGR +RPE+ RT FG G S GQFF Q+L IKLN V + DLSYL
Sbjct: 188 DWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPFTQLDLSYL 247
Query: 357 IKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKD 416
++ Y++ F V A + E V G+VR++Y + F+ A+ G+ ++ K
Sbjct: 248 QQEAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKS 307
Query: 417 GIPRTAYKGVVVFRYQTPRRIFLVGPDS 444
G+PR Y+G+V F ++ RR+ L P +
Sbjct: 308 GVPRAGYRGIVTFLFRG-RRVHLAPPQT 334
>pdb|2AM3|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I In
Complex With Udp-Glucose
pdb|2AM4|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I In
Complex With Udp-2-deoxy-2-fluoro-glucose
pdb|2AM5|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I In
Complex With Udp
pdb|2APC|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I In
Complex With Udp-glcnac Phosphonate
Length = 342
Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 197/327 (60%), Gaps = 7/327 (2%)
Query: 122 CNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKLTYMQHLDFEPV 180
C+R+ + R ++ + Y+ S A +P+ VSQD + + SY +T+++ D +
Sbjct: 10 CDRST-VRRCLDKLLHYRPS-AELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNI 67
Query: 181 HAD-NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLD 239
+ + YYKIARHY+WAL +F+ N+ +++EDD+E+APDFF+YF+A LL
Sbjct: 68 AVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLK 127
Query: 240 KDKSIMAVSSWNDNGQKQFVHD--PYVLYRSDFFPGLGWMLTRTTWDELSPKWPKAYWDD 297
D S+ VS+WNDNG++Q V P +LYR+DFFPGLGW+L W EL PKWPKA+WDD
Sbjct: 128 ADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDD 187
Query: 298 WLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPVDWKSRDLSYLI 357
W+R E KGR +RPE+ RT FG G S GQFF Q+L IKLN V + DLSYL
Sbjct: 188 WMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPFTQLDLSYLQ 247
Query: 358 KDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKDG 417
++ Y++ F V A + E V G+VR++Y + F+ A+ G+ ++ K G
Sbjct: 248 QEAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSG 307
Query: 418 IPRTAYKGVVVFRYQTPRRIFLVGPDS 444
+PR Y+G+V F ++ RR+ L P +
Sbjct: 308 VPRAGYRGIVTFLFRG-RRVHLAPPQT 333
>pdb|1FOA|A Chain A, Crystal Structure Of N-acetylglucosaminyltransferase I
pdb|1FO9|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 348
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 197/327 (60%), Gaps = 7/327 (2%)
Query: 122 CNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKLTYMQHLDFEPV 180
C+R+ + R ++ + Y+ S A +P+ VSQD + + SY +T+++ D +
Sbjct: 16 CDRST-VRRCLDKLLHYRPS-AELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNI 73
Query: 181 HAD-NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLD 239
+ + YYKIARHY+WAL +F+ N+ +++EDD+E+APDFF+YF+A LL
Sbjct: 74 AVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLK 133
Query: 240 KDKSIMAVSSWNDNGQKQFVHD--PYVLYRSDFFPGLGWMLTRTTWDELSPKWPKAYWDD 297
D S+ VS+WNDNG++Q V P +LYR+DFFPGLGW+L W EL PKWPKA+WDD
Sbjct: 134 ADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDD 193
Query: 298 WLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPVDWKSRDLSYLI 357
W+R E KGR +RPE+ RT FG G S GQFF Q+L IKLN V + DLSYL
Sbjct: 194 WMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPFTQLDLSYLQ 253
Query: 358 KDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKDG 417
++ Y++ F V A + E V G+VR++Y + F+ A+ G+ ++ K G
Sbjct: 254 QEAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSG 313
Query: 418 IPRTAYKGVVVFRYQTPRRIFLVGPDS 444
+PR Y+G+V F ++ RR+ L P +
Sbjct: 314 VPRAGYRGIVTFLFRG-RRVHLAPPQT 339
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJF|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 518
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 160 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 211
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 212 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 267
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 268 DEILEASDGI 277
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2
pdb|1T5A|B Chain B, Human Pyruvate Kinase M2
pdb|1T5A|C Chain C, Human Pyruvate Kinase M2
pdb|1T5A|D Chain D, Human Pyruvate Kinase M2
Length = 567
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 209 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 260
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 261 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 316
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 317 DEILEASDGI 326
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator
pdb|4G1N|B Chain B, Pkm2 In Complex With An Activator
pdb|4G1N|C Chain C, Pkm2 In Complex With An Activator
pdb|4G1N|D Chain D, Pkm2 In Complex With An Activator
Length = 518
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 160 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 211
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 212 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 267
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 268 DEILEASDGI 277
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GQY|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3GR4|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3H6O|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3ME3|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 550
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 192 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 243
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 244 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 299
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 300 DEILEASDGI 309
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|B Chain B, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|C Chain C, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
pdb|3BJT|D Chain D, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein
Length = 530
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 172 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 190 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 241
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 242 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 297
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 298 DEILEASDGI 307
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|B Chain B, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|C Chain C, Activator-Bound Structure Of Human Pyruvate Kinase M2
pdb|3U2Z|D Chain D, Activator-Bound Structure Of Human Pyruvate Kinase M2
Length = 533
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 175 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 226
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 227 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 282
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 283 DEILEASDGI 292
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase
pdb|3SRF|A Chain A, Human M1 Pyruvate Kinase
pdb|3SRF|B Chain B, Human M1 Pyruvate Kinase
pdb|3SRF|D Chain D, Human M1 Pyruvate Kinase
pdb|3SRF|E Chain E, Human M1 Pyruvate Kinase
pdb|3SRF|F Chain F, Human M1 Pyruvate Kinase
pdb|3SRF|G Chain G, Human M1 Pyruvate Kinase
pdb|3SRF|H Chain H, Human M1 Pyruvate Kinase
Length = 551
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 193 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 244
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 245 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 300
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 301 DEILEASDGI 310
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|B Chain B, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|C Chain C, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
pdb|3G2G|D Chain D, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2
Length = 533
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 175 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 226
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 227 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 282
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 283 DEILEASDGI 292
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|B Chain B, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|C Chain C, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRD|D Chain D, Human M2 Pyruvate Kinase In Complex With Fructose 1-6
Bisphosphate And Oxalate.
pdb|3SRH|A Chain A, Human M2 Pyruvate Kinase
pdb|3SRH|B Chain B, Human M2 Pyruvate Kinase
pdb|3SRH|C Chain C, Human M2 Pyruvate Kinase
pdb|3SRH|D Chain D, Human M2 Pyruvate Kinase
Length = 551
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 193 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 244
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 245 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 300
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 301 DEILEASDGI 310
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2)
pdb|4B2D|A Chain A, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|B Chain B, Human Pkm2 With L-serine And Fbp Bound.
pdb|4B2D|C Chain C, Human Pkm2 With L-serine And Fbp Bound
Length = 548
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G SLG L P D+P +
Sbjct: 190 KIYVDDGLISLQVKQKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 241
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 242 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 297
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 298 DEILEASDGI 307
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1)
Pyruvate Kinase, At A Resolution Of 2.6 Angstroms
Length = 530
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L KG F+ EV E+G SLG L P D+P +
Sbjct: 172 KVYVDDGLISLLVKEKGADFLVTEV-------ENGGSLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA+ VH VL +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With
Mn2+, K+, And Pyruvate
Length = 530
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 172 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + + ++ + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVDEDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|B Chain B, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|C Chain C, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|D Chain D, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|E Chain E, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|F Chain F, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|G Chain G, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
pdb|3N25|H Chain H, The Structure Of Muscle Pyruvate Kinase In Complex With
Proline, Pyruvate, And Mn2+
Length = 531
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 173 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 224
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 225 DIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 280
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 281 DEILEASDGI 290
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|B Chain B, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|C Chain C, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|D Chain D, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|E Chain E, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|F Chain F, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|G Chain G, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase.
pdb|2G50|H Chain H, The Location Of The Allosteric Amino Acid Binding Site Of
Muscle Pyruvate Kinase
Length = 530
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 172 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|B Chain B, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|C Chain C, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|D Chain D, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|E Chain E, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|F Chain F, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|G Chain G, Recombinant Rabbit Muscle Pyruvate Kinase
pdb|1F3W|H Chain H, Recombinant Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 172 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|B Chain B, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|C Chain C, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|D Chain D, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|E Chain E, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|F Chain F, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|G Chain G, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1AQF|H Chain H, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L-
Phospholactate
pdb|1A5U|A Chain A, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|B Chain B, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|C Chain C, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|D Chain D, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|E Chain E, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|F Chain F, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|G Chain G, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A5U|H Chain H, Pyruvate Kinase Complex With Bis Mg-Atp-Na-Oxalate
pdb|1A49|A Chain A, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|B Chain B, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|C Chain C, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|D Chain D, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|E Chain E, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|F Chain F, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|G Chain G, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
pdb|1A49|H Chain H, Bis Mg-Atp-K-Oxalate Complex Of Pyruvate Kinase
Length = 530
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 172 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|B Chain B, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|C Chain C, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|D Chain D, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|E Chain E, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|F Chain F, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|G Chain G, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
pdb|1F3X|H Chain H, S402p Mutant Of Rabbit Muscle Pyruvate Kinase
Length = 530
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 292 KAYWDDWL-RLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPV--DW 348
K Y DD L L+ KG F+ EV E+G LG L P D+P +
Sbjct: 172 KVYVDDGLISLQVKQKGPDFLVTEV-------ENGGFLGSKKGVNL-PGAAVDLPAVSEK 223
Query: 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQF 408
+DL + ++ + + FA ++KA VH +L +++I K ++H + R+F
Sbjct: 224 DIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKG--KNIKIISKIENHEGV--RRF 279
Query: 409 GIFNEWKDGI 418
E DGI
Sbjct: 280 DEILEASDGI 289
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 270 FFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEV---CRTYNFGEHGS 326
F G GW + + W + WD+ LR + K Q + V +T+ +
Sbjct: 281 IFEGAGWNVIKVMWG--------SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAY 332
Query: 327 SLGQFFQQYLAPIKLNDVPVDWKSRDLSYLIKDNYE-KYFAEIVKKATPVHGENVVLKAH 385
FF +Y L DW + L + ++ K KKA G+ V+ AH
Sbjct: 333 VREHFFGKYPETAAL---VADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAH 389
Query: 386 DIEG 389
I+G
Sbjct: 390 TIKG 393
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 270 FFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEV---CRTYNFGEHGS 326
F G GW + + W + WD+ LR + K Q + V +T+ +
Sbjct: 281 IFEGAGWNVIKVMWG--------SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAY 332
Query: 327 SLGQFFQQYLAPIKLNDVPVDWKSRDLSYLIKDNYE-KYFAEIVKKATPVHGENVVLKAH 385
FF +Y L DW + L + ++ K KKA G+ V+ AH
Sbjct: 333 VREHFFGKYPETAAL---VADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAH 389
Query: 386 DIEG 389
I+G
Sbjct: 390 TIKG 393
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 270 FFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEV---CRTYNFGEHGS 326
F G GW + + W + WD+ LR + K Q + V +T+ +
Sbjct: 281 IFEGAGWNVIKVMWG--------SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAY 332
Query: 327 SLGQFFQQYLAPIKLNDVPVDWKSRDLSYLIKDNYE-KYFAEIVKKATPVHGENVVLKAH 385
FF +Y L DW + L + ++ K KKA G+ V+ AH
Sbjct: 333 VREHFFGKYPETAAL---VADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAH 389
Query: 386 DIEG 389
I+G
Sbjct: 390 TIKG 393
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 270 FFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEV---CRTYNFGEHGS 326
F G GW + + W + WD+ LR + K Q + V +T+ +
Sbjct: 281 IFEGAGWNVIKVMWG--------SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAY 332
Query: 327 SLGQFFQQYLAPIKLNDVPVDWKSRDLSYLIKDNYE-KYFAEIVKKATPVHGENVVLKAH 385
FF +Y L DW + L + ++ K KKA G+ V+ AH
Sbjct: 333 VREHFFGKYPETAAL---VADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAH 389
Query: 386 DIEG 389
I+G
Sbjct: 390 TIKG 393
>pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
Adp
Length = 535
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 210 NFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMA 246
N SR D ++ P DYFEA A L D D ++ A
Sbjct: 243 NLSR-----DHLDFHPSMADYFEAXASLFDPDSALRA 274
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 9/34 (26%)
Query: 199 KWALDNLFYKHNFSRV---------IILEDDMEI 223
KWALDNL + N V +I+E+D EI
Sbjct: 220 KWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEI 253
>pdb|3QKG|A Chain A, Crystal Structure Of Alpha-1-Microglobulin At 2.3 A
Resolution
Length = 193
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 348 WKSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQ 407
W SY++ NY++Y + KK + HG + K + +R F ++A+
Sbjct: 95 WNITMESYVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQD--FRVVAQG 152
Query: 408 FGIFNEWKDGIPRTAYKGVVVFRYQTPRRIFL 439
GI +D I A +G V Q P I +
Sbjct: 153 VGIP---EDSIFTMADRGECVPGEQEPEPILI 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,646,862
Number of Sequences: 62578
Number of extensions: 580982
Number of successful extensions: 1395
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 32
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)