Query 012912
Match_columns 453
No_of_seqs 250 out of 514
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03071 GNT-I: GNT-I family; 100.0 8E-120 2E-124 936.0 27.4 427 22-450 1-432 (434)
2 KOG1413 N-acetylglucosaminyltr 100.0 1E-100 3E-105 761.5 26.3 403 32-451 1-409 (411)
3 cd02514 GT13_GLCNAC-TI GT13_GL 100.0 1.3E-96 3E-101 746.4 30.8 329 114-444 1-334 (334)
4 PF05060 MGAT2: N-acetylglucos 99.7 6.1E-15 1.3E-19 150.7 20.6 210 113-328 31-297 (356)
5 KOG2791 N-acetylglucosaminyltr 99.4 1.5E-12 3.3E-17 130.8 12.7 213 112-329 116-382 (455)
6 cd02520 Glucosylceramide_synth 99.1 3.5E-09 7.6E-14 98.4 15.6 180 113-334 1-188 (196)
7 cd04186 GT_2_like_c Subfamily 99.1 4.7E-09 1E-13 92.2 14.7 128 117-287 1-128 (166)
8 cd04185 GT_2_like_b Subfamily 99.0 8.4E-09 1.8E-13 95.3 14.9 137 117-287 1-137 (202)
9 cd04196 GT_2_like_d Subfamily 99.0 6.7E-09 1.5E-13 95.6 14.2 180 116-316 1-199 (214)
10 cd06421 CESA_CelA_like CESA_Ce 98.9 1.4E-08 3.1E-13 95.2 13.9 199 113-334 1-222 (234)
11 cd06423 CESA_like CESA_like is 98.9 9.8E-09 2.1E-13 89.1 11.2 150 117-287 1-170 (180)
12 cd06433 GT_2_WfgS_like WfgS an 98.9 2.4E-08 5.2E-13 90.3 13.7 179 117-322 2-196 (202)
13 cd06439 CESA_like_1 CESA_like_ 98.9 2.7E-08 5.8E-13 95.0 14.6 201 106-333 22-239 (251)
14 cd06420 GT2_Chondriotin_Pol_N 98.9 3.7E-08 8E-13 89.0 13.1 170 117-320 1-180 (182)
15 PRK10018 putative glycosyl tra 98.8 1.3E-07 2.8E-12 94.7 17.5 193 111-326 3-212 (279)
16 cd02525 Succinoglycan_BP_ExoA 98.8 2.2E-07 4.8E-12 87.6 17.0 197 115-336 2-221 (249)
17 cd04184 GT2_RfbC_Mx_like Myxoc 98.8 7.7E-08 1.7E-12 88.4 13.5 177 113-315 1-196 (202)
18 cd04195 GT2_AmsE_like GT2_AmsE 98.8 7.3E-08 1.6E-12 88.6 13.3 165 116-301 1-183 (201)
19 cd02510 pp-GalNAc-T pp-GalNAc- 98.8 9.7E-08 2.1E-12 94.8 14.8 187 116-323 1-227 (299)
20 PF00535 Glycos_transf_2: Glyc 98.8 2E-08 4.2E-13 87.5 8.2 102 116-238 1-106 (169)
21 cd04192 GT_2_like_e Subfamily 98.8 1.5E-07 3.2E-12 87.6 14.5 104 117-235 1-107 (229)
22 PRK10063 putative glycosyl tra 98.8 3.5E-07 7.7E-12 89.6 16.9 194 113-329 1-203 (248)
23 PRK11204 N-glycosyltransferase 98.8 5.7E-08 1.2E-12 100.9 11.8 183 110-320 51-259 (420)
24 cd06427 CESA_like_2 CESA_like_ 98.7 1.7E-07 3.7E-12 89.8 13.5 120 113-250 1-122 (241)
25 cd06442 DPM1_like DPM1_like re 98.7 2.8E-07 6E-12 86.0 14.6 117 117-252 1-118 (224)
26 cd06437 CESA_CaSu_A2 Cellulose 98.7 3.5E-07 7.6E-12 86.7 14.3 198 113-335 1-225 (232)
27 cd06434 GT2_HAS Hyaluronan syn 98.7 1.9E-07 4.1E-12 88.0 12.3 112 115-251 2-114 (235)
28 cd00761 Glyco_tranf_GTA_type G 98.7 2.9E-07 6.4E-12 77.9 12.1 128 117-289 1-130 (156)
29 cd06913 beta3GnTL1_like Beta 1 98.7 4.8E-07 1.1E-11 85.0 13.9 184 117-321 1-210 (219)
30 PRK11498 bcsA cellulose syntha 98.6 4.4E-07 9.6E-12 103.0 15.8 178 110-312 257-460 (852)
31 TIGR03111 glyc2_xrt_Gpos1 puta 98.6 2.5E-07 5.3E-12 97.8 11.8 119 111-251 47-169 (439)
32 cd02522 GT_2_like_a GT_2_like_ 98.6 1.9E-06 4.1E-11 80.2 15.1 171 115-315 1-181 (221)
33 PRK10073 putative glycosyl tra 98.6 6.1E-07 1.3E-11 91.5 12.5 115 111-246 4-119 (328)
34 cd02526 GT2_RfbF_like RfbF is 98.5 1.7E-06 3.7E-11 81.6 13.5 178 117-318 1-202 (237)
35 cd04179 DPM_DPG-synthase_like 98.5 1.3E-06 2.7E-11 79.0 10.8 119 117-253 1-120 (185)
36 PRK14583 hmsR N-glycosyltransf 98.4 1.6E-06 3.5E-11 91.6 11.9 116 111-250 73-192 (444)
37 PF13641 Glyco_tranf_2_3: Glyc 98.4 3E-07 6.6E-12 86.3 4.8 195 113-334 1-221 (228)
38 TIGR03030 CelA cellulose synth 98.4 9.1E-06 2E-10 91.2 17.3 178 110-312 128-349 (713)
39 cd04187 DPM1_like_bac Bacteria 98.4 2.5E-06 5.3E-11 77.6 10.4 108 117-245 1-112 (181)
40 cd06438 EpsO_like EpsO protein 98.4 2.3E-06 5E-11 78.5 9.9 105 117-235 1-106 (183)
41 cd06436 GlcNAc-1-P_transferase 98.4 3E-06 6.5E-11 78.7 10.8 114 117-249 1-124 (191)
42 TIGR03472 HpnI hopanoid biosyn 98.4 4.2E-06 9E-11 86.5 12.9 200 112-334 40-264 (373)
43 TIGR01556 rhamnosyltran L-rham 98.3 7E-06 1.5E-10 80.6 12.9 173 120-320 1-200 (281)
44 TIGR03469 HonB hopene-associat 98.3 5.2E-06 1.1E-10 86.2 12.4 114 110-236 37-159 (384)
45 cd06435 CESA_NdvC_like NdvC_li 98.3 1.1E-05 2.4E-10 76.2 12.4 113 116-250 1-120 (236)
46 COG1216 Predicted glycosyltran 98.2 1.2E-05 2.5E-10 80.8 11.7 120 112-252 2-123 (305)
47 PLN02726 dolichyl-phosphate be 98.2 1.3E-05 2.9E-10 77.1 10.5 109 110-234 6-117 (243)
48 PRK13915 putative glucosyl-3-p 98.2 1.8E-05 3.8E-10 80.3 11.7 130 105-250 23-153 (306)
49 cd04188 DPG_synthase DPG_synth 98.1 2.4E-05 5.1E-10 73.2 11.0 103 117-234 1-106 (211)
50 COG0463 WcaA Glycosyltransfera 98.1 1.6E-05 3.5E-10 68.1 9.0 100 112-230 2-102 (291)
51 cd04190 Chitin_synth_C C-termi 98.1 1.9E-05 4.2E-10 76.4 9.7 103 117-251 1-111 (244)
52 cd02511 Beta4Glucosyltransfera 98.0 3.6E-05 7.8E-10 73.6 10.6 96 115-236 2-97 (229)
53 PRK10714 undecaprenyl phosphat 97.9 8.3E-05 1.8E-09 75.9 10.2 111 110-235 3-115 (325)
54 PTZ00260 dolichyl-phosphate be 97.7 0.00035 7.6E-09 71.6 11.8 126 109-250 66-201 (333)
55 COG1215 Glycosyltransferases, 97.5 0.00084 1.8E-08 69.5 11.8 117 112-248 53-172 (439)
56 cd04191 Glucan_BSP_ModH Glucan 97.5 0.002 4.3E-08 63.8 13.3 118 115-250 1-132 (254)
57 PRK05454 glucosyltransferase M 97.3 0.0019 4.1E-08 72.6 11.8 116 112-249 123-256 (691)
58 PF10111 Glyco_tranf_2_2: Glyc 97.3 0.0039 8.5E-08 62.0 12.6 116 116-248 1-127 (281)
59 PRK14716 bacteriophage N4 adso 97.0 0.0046 1E-07 67.2 10.9 110 112-235 65-183 (504)
60 PRK11234 nfrB bacteriophage N4 96.5 0.021 4.5E-07 64.8 11.5 110 111-235 61-180 (727)
61 KOG2978 Dolichol-phosphate man 96.1 0.029 6.3E-07 53.8 8.4 108 113-238 3-116 (238)
62 PRK15489 nfrB bacteriophage N4 95.9 0.062 1.3E-06 60.7 11.7 110 111-235 69-188 (703)
63 PF01755 Glyco_transf_25: Glyc 94.7 0.25 5.4E-06 46.2 9.9 110 115-239 2-114 (200)
64 PF13712 Glyco_tranf_2_5: Glyc 88.5 2.2 4.8E-05 41.3 8.4 87 118-248 3-90 (217)
65 cd06532 Glyco_transf_25 Glycos 87.9 5 0.00011 35.3 9.6 95 118-226 3-98 (128)
66 PF04666 Glyco_transf_54: N-Ac 86.7 8.7 0.00019 39.3 11.8 126 113-240 52-199 (297)
67 cd00505 Glyco_transf_8 Members 85.6 5.7 0.00012 38.6 9.6 111 116-233 2-118 (246)
68 cd04194 GT8_A4GalT_like A4GalT 84.8 6.8 0.00015 37.9 9.6 110 119-232 4-117 (248)
69 PF10828 DUF2570: Protein of u 82.4 27 0.00059 30.3 11.4 56 18-74 3-58 (110)
70 COG2943 MdoH Membrane glycosyl 80.5 13 0.00029 41.1 10.5 118 114-249 145-276 (736)
71 PRK00888 ftsB cell division pr 80.0 8.3 0.00018 33.5 7.3 21 17-37 1-21 (105)
72 PF09258 Glyco_transf_64: Glyc 77.7 8.1 0.00017 38.3 7.4 104 117-246 3-109 (247)
73 COG3306 Glycosyltransferase in 77.4 3.6 7.7E-05 41.2 4.8 44 193-238 71-114 (255)
74 PF06103 DUF948: Bacterial pro 76.9 34 0.00074 28.2 9.9 18 20-37 2-19 (90)
75 PF13506 Glyco_transf_21: Glyc 75.9 6.3 0.00014 36.7 5.8 131 202-336 22-171 (175)
76 PF03214 RGP: Reversibly glyco 75.2 3 6.6E-05 43.3 3.7 96 119-229 13-110 (348)
77 cd00899 b4GalT Beta-4-Galactos 72.3 47 0.001 32.7 11.0 148 114-314 3-158 (219)
78 KOG3916 UDP-Gal:glucosylcerami 72.0 33 0.00071 36.0 10.2 154 113-318 151-313 (372)
79 PF11051 Mannosyl_trans3: Mann 64.6 24 0.00053 35.2 7.5 22 201-224 83-104 (271)
80 PF01501 Glyco_transf_8: Glyco 62.3 13 0.00029 34.9 4.9 120 123-249 9-133 (250)
81 PRK06975 bifunctional uroporph 61.8 45 0.00098 37.8 9.8 75 25-100 338-413 (656)
82 PF03954 Lectin_N: Hepatic lec 59.3 76 0.0017 29.1 8.9 88 12-99 28-129 (138)
83 KOG2977 Glycosyltransferase [G 57.6 53 0.0012 33.8 8.4 53 114-166 68-125 (323)
84 cd06431 GT8_LARGE_C LARGE cata 57.3 79 0.0017 31.9 9.7 124 116-248 4-133 (280)
85 PRK15171 lipopolysaccharide 1, 56.8 1.3E+02 0.0029 31.1 11.5 121 118-248 28-154 (334)
86 PRK13922 rod shape-determining 54.9 2.3E+02 0.0049 28.2 12.5 29 70-98 67-95 (276)
87 COG3883 Uncharacterized protei 54.1 1.1E+02 0.0024 31.1 9.9 47 54-100 48-94 (265)
88 PRK11637 AmiB activator; Provi 53.1 1E+02 0.0022 32.9 10.1 42 58-99 75-116 (428)
89 TIGR02209 ftsL_broad cell divi 51.3 74 0.0016 25.7 7.0 22 68-89 34-55 (85)
90 PLN02523 galacturonosyltransfe 51.3 4E+02 0.0087 29.9 17.5 113 113-229 247-395 (559)
91 PF01786 AOX: Alternative oxid 51.1 25 0.00054 34.3 4.7 44 10-53 102-145 (207)
92 TIGR02251 HIF-SF_euk Dullard-l 50.8 22 0.00049 32.6 4.3 42 118-167 38-79 (162)
93 COG4839 FtsL Protein required 50.8 45 0.00097 29.9 5.8 39 26-82 53-91 (120)
94 PF13632 Glyco_trans_2_3: Glyc 49.1 20 0.00044 32.6 3.7 113 214-334 2-135 (193)
95 PF01762 Galactosyl_T: Galacto 48.5 64 0.0014 30.1 7.1 84 201-286 70-163 (195)
96 KOG4179 Lysyl hydrolase/glycos 46.6 1E+02 0.0023 33.4 8.7 110 119-240 297-408 (568)
97 PLN02458 transferase, transfer 46.4 2.3E+02 0.005 29.8 11.0 107 115-233 114-225 (346)
98 PLN03180 reversibly glycosylat 45.7 9.5 0.00021 39.8 1.0 96 114-226 12-109 (346)
99 PF06156 DUF972: Protein of un 44.8 56 0.0012 28.6 5.5 45 56-100 13-57 (107)
100 PF11382 DUF3186: Protein of u 43.8 2.7E+02 0.0058 28.6 11.2 57 77-138 51-109 (308)
101 cd00218 GlcAT-I Beta1,3-glucur 41.7 2.8E+02 0.006 27.5 10.4 108 116-234 4-119 (223)
102 COG2919 Septum formation initi 41.6 1.2E+02 0.0026 26.7 7.2 65 14-100 21-85 (117)
103 PLN02718 Probable galacturonos 40.5 4.4E+02 0.0096 29.9 12.8 114 115-232 314-439 (603)
104 PF11932 DUF3450: Protein of u 40.3 2.6E+02 0.0055 27.5 10.1 30 70-99 54-83 (251)
105 PF13815 Dzip-like_N: Iguana/D 40.3 1.4E+02 0.003 26.2 7.4 45 49-93 67-115 (118)
106 PF06005 DUF904: Protein of un 40.2 1E+02 0.0022 25.1 6.0 43 57-99 10-52 (72)
107 PF10805 DUF2730: Protein of u 39.9 1.8E+02 0.0039 25.1 7.9 39 60-98 37-77 (106)
108 PF13747 DUF4164: Domain of un 39.6 1.4E+02 0.0031 25.1 7.0 61 40-100 7-67 (89)
109 cd06430 GT8_like_2 GT8_like_2 38.5 2.7E+02 0.0058 28.8 10.2 121 118-248 5-132 (304)
110 PRK13922 rod shape-determining 38.5 2E+02 0.0043 28.6 9.2 33 66-98 70-102 (276)
111 PRK13169 DNA replication intia 38.2 85 0.0018 27.7 5.6 42 57-98 14-55 (110)
112 PRK11637 AmiB activator; Provi 36.9 2E+02 0.0043 30.6 9.3 39 57-95 81-119 (428)
113 cd06429 GT8_like_1 GT8_like_1 36.7 3.8E+02 0.0083 26.7 10.8 41 191-233 96-136 (257)
114 PF05600 DUF773: Protein of un 36.0 1.3E+02 0.0028 33.2 7.9 66 32-97 423-492 (507)
115 PF11316 Rhamno_transf: Putati 35.9 2.4E+02 0.0051 27.9 9.0 28 211-238 113-142 (234)
116 PF10960 DUF2762: Protein of u 35.7 1.6E+02 0.0035 24.0 6.5 37 25-64 16-52 (71)
117 PF04999 FtsL: Cell division p 35.5 1.7E+02 0.0036 24.4 6.9 34 60-93 37-70 (97)
118 PF10828 DUF2570: Protein of u 34.9 3E+02 0.0065 23.8 9.7 37 19-55 10-46 (110)
119 COG1213 Predicted sugar nucleo 34.5 1.4E+02 0.003 29.9 7.1 109 119-255 26-136 (239)
120 KOG1510 RNA polymerase II holo 34.5 1.3E+02 0.0027 27.7 6.2 57 39-98 54-110 (139)
121 PF04799 Fzo_mitofusin: fzo-li 32.5 2E+02 0.0042 27.5 7.4 23 41-63 79-106 (171)
122 PF14584 DUF4446: Protein of u 32.4 2.6E+02 0.0055 26.0 8.1 66 19-93 9-74 (151)
123 TIGR03752 conj_TIGR03752 integ 32.4 80 0.0017 34.5 5.5 81 17-98 6-99 (472)
124 PF04375 HemX: HemX; InterPro 31.8 3.9E+02 0.0085 28.1 10.4 31 68-98 89-119 (372)
125 KOG4360 Uncharacterized coiled 31.1 91 0.002 34.5 5.6 48 54-101 201-248 (596)
126 PF07573 AreA_N: Nitrogen regu 30.6 25 0.00055 29.3 1.0 16 409-424 69-84 (88)
127 PF04420 CHD5: CHD5-like prote 29.1 1.2E+02 0.0027 28.0 5.5 58 36-93 19-87 (161)
128 PF01741 MscL: Large-conductan 27.7 1.1E+02 0.0023 27.6 4.7 43 22-65 82-126 (128)
129 PF10046 BLOC1_2: Biogenesis o 27.5 3.1E+02 0.0067 23.3 7.3 58 44-101 38-95 (99)
130 PF05679 CHGN: Chondroitin N-a 27.4 2.8E+02 0.0062 30.4 8.8 107 113-233 247-364 (499)
131 PF13704 Glyco_tranf_2_4: Glyc 27.3 3.3E+02 0.0072 21.9 9.0 86 123-226 2-87 (97)
132 PF11853 DUF3373: Protein of u 27.2 40 0.00086 37.0 2.1 37 64-101 24-60 (489)
133 PLN02867 Probable galacturonos 27.1 75 0.0016 35.3 4.2 38 190-229 326-363 (535)
134 PF11221 Med21: Subunit 21 of 27.0 2.8E+02 0.006 25.2 7.3 42 55-96 80-128 (144)
135 KOG3737 Predicted polypeptide 26.1 2.7E+02 0.006 30.2 7.9 117 110-247 152-274 (603)
136 PRK10920 putative uroporphyrin 26.1 5.5E+02 0.012 27.5 10.3 37 62-98 89-125 (390)
137 PRK14872 rod shape-determining 24.9 2.9E+02 0.0063 29.0 7.8 26 73-98 58-83 (337)
138 PLN03193 beta-1,3-galactosyltr 24.4 9.2E+02 0.02 26.1 16.1 156 59-228 79-254 (408)
139 PF13094 CENP-Q: CENP-Q, a CEN 24.0 2E+02 0.0043 26.3 5.9 40 59-98 28-67 (160)
140 PLN02190 cellulose synthase-li 23.7 1.7E+02 0.0037 33.9 6.3 46 113-159 93-142 (756)
141 PF05529 Bap31: B-cell recepto 23.3 4.3E+02 0.0094 24.7 8.2 13 25-37 110-122 (192)
142 smart00502 BBC B-Box C-termina 23.0 3.8E+02 0.0082 22.3 7.1 39 62-100 61-100 (127)
143 TIGR03495 phage_LysB phage lys 22.5 6E+02 0.013 23.2 10.1 76 16-101 1-76 (135)
144 PF07851 TMPIT: TMPIT-like pro 22.5 3.3E+02 0.0072 28.6 7.7 41 37-77 18-58 (330)
145 PF02388 FemAB: FemAB family; 22.4 4.3E+02 0.0094 28.0 8.8 29 52-80 236-264 (406)
146 PLN02659 Probable galacturonos 22.3 81 0.0017 35.0 3.3 40 190-231 325-364 (534)
147 PF10212 TTKRSYEDQ: Predicted 22.3 1.4E+02 0.0029 33.2 5.0 60 57-116 301-362 (518)
148 PF14257 DUF4349: Domain of un 22.3 2.5E+02 0.0055 27.6 6.7 43 58-101 149-191 (262)
149 PF14208 DUF4320: Domain of un 22.2 2.2E+02 0.0048 25.2 5.5 34 40-73 26-59 (116)
150 cd08577 PI-PLCc_GDPD_SF_unchar 21.9 1.1E+02 0.0023 30.1 3.9 95 39-157 53-148 (228)
151 PRK00888 ftsB cell division pr 21.7 1.5E+02 0.0033 25.6 4.3 26 73-98 35-60 (105)
152 COG4092 Predicted glycosyltran 21.4 4.6E+02 0.01 27.1 8.1 111 121-240 13-124 (346)
153 KOG2189 Vacuolar H+-ATPase V0 21.1 2.7E+02 0.0058 32.5 7.1 60 37-100 46-120 (829)
154 PLN02829 Probable galacturonos 20.5 1.1E+02 0.0023 34.7 3.9 40 190-231 438-477 (639)
155 PRK12705 hypothetical protein; 20.4 8.5E+02 0.018 27.1 10.7 22 60-81 72-93 (508)
No 1
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=100.00 E-value=7.5e-120 Score=936.00 Aligned_cols=427 Identities=53% Similarity=0.935 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHH-HhhhhhHHhHHHHHHHHHHHh
Q 012912 22 LAAAVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALED-EKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 100 (453)
++||++|+|+||++|.||++|++++++++++|++|++|++.+|+|++.++++++++|. +++++++++.+++..++++++
T Consensus 1 ~~A~l~~~~~~i~lf~~~s~~~~~~~~~~~~~~~~~~ql~~~I~~~~~~~e~~l~le~~~l~~~~~~~~~~~~~~~~~~~ 80 (434)
T PF03071_consen 1 WGAALFFIWIFILLFFLWSRYADRLNAAIESENKCTSQLEKEIDQIAQQQEAILELEKKQLKRLEEELRQLRDRVEDLEE 80 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceehHHHHHHHHHHHHhccCCCccchhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3799999999999999999999999999999999999999999999999999999988 999999999999999999888
Q ss_pred cccccccCCCCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc-CCcceeeeccccc
Q 012912 101 RGLERLVDKVQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKLTYMQHLDFEP 179 (453)
Q Consensus 101 ~~~~~~~~~~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~-~~~~~i~~~~~~~ 179 (453)
+..++...+...+++||||||||||+||+|||++|++++| +++++||+|||||++++|++++++| +++.+|+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp-~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~ 159 (434)
T PF03071_consen 81 KKQPKTNSKNKEPVIPVLVFACNRPDYLRRTLDSLLKYRP-SAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSP 159 (434)
T ss_dssp ----------------EEEEESS-TT-HHHHHHHHHHH-S--TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-
T ss_pred ccccccccccCCCcceEEEEecCCcHHHHHHHHHHHHcCC-CCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCC
Confidence 7666666667889999999999999999999999999985 5889999999999999999999999 6788999988776
Q ss_pred cCCCC-CCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcc
Q 012912 180 VHADN-PGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQF 258 (453)
Q Consensus 180 in~~~-~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~ 258 (453)
+.+.. .+++.+|++||+||||||++||+.++|++||||||||++|||||+||++++++|++|++|||||||||||+.+.
T Consensus 160 i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~~~~ 239 (434)
T PF03071_consen 160 ITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGKEHF 239 (434)
T ss_dssp ----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-BGGG
T ss_pred ceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCcccc
Confidence 55432 23578999999999999999999888999999999999999999999999999999999999999999999998
Q ss_pred cCC--CceeeecCCCcccccccchhhhhhhCCCCCccchHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHhHHhhh
Q 012912 259 VHD--PYVLYRSDFFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYL 336 (453)
Q Consensus 259 v~d--~~~lyRsdffpgwGWalwr~~W~el~p~WP~~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~f~~yl 336 (453)
+++ |..|||||||||||||+||++|+|++|+||+++||||||.+++|+||+||+||||||+|||..|+|+|++|++||
T Consensus 240 ~~~~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~~WDdwmR~~~~rkgR~cIrPeisRt~~fg~~G~s~g~~f~~~l 319 (434)
T PF03071_consen 240 VDDSRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKAFWDDWMRQPEQRKGRQCIRPEISRTYHFGKKGVSNGQFFDKYL 319 (434)
T ss_dssp S-TT-TT-EEEESS---SSEEEEHHHHHHHGGG--SS-HHHHHTSHHHHTT-EEEEESSBSEEE--SSSSS-THHHHHTG
T ss_pred ccCCCccceEecccCCchHHHhhHHHHHhhcccCCCCCchhhhcCccccCCCceeeccCCCccccCcCCcchHHHHHHHH
Confidence 877 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccceecCccccchhhHHHHHHHHHHhcCccccccccccccCCCCcEEEEeCChhHHHHHHHHcCcccccCC
Q 012912 337 APIKLNDVPVDWKSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKD 416 (453)
Q Consensus 337 ~~ikln~~~v~f~~~dl~yL~~~~Yd~~~~~~v~~a~~i~~~~~~~~~~~~~~~~~i~Y~~~~~~~~~a~~~~~~~d~k~ 416 (453)
++|++|+.+|+|+++||+||.+++||+.|.+.|++|++|+++++.++...+.|+|||.|+++++|+++|++||||+|||+
T Consensus 320 ~~i~ln~~~v~~~~~dl~yl~~~~Yd~~~~~~v~~a~~v~~~~~~~~~~~~~~~vri~Y~~~~~~~~~a~~l~im~d~k~ 399 (434)
T PF03071_consen 320 KKIKLNTEFVDFTKMDLSYLLKDNYDKEFKKEVYSAPPVDSSDLITFAFSTSGDVRIQYSSQPDFKRIAKKLGIMDDWKS 399 (434)
T ss_dssp GGB-B--S---GGGS--GGGSHHHHHHHHHHHHHHS-B--HHHHHTT--TT-SEEEEE--SHHHHHHHHHHTT----EET
T ss_pred hhccccCCcccceeCCHHHhhhhhhHHHHHHHHhcCcccchhhhccccccCCCCEEEEECChHHHHHHHHhCCchhhccC
Confidence 99999999999999999999999999999999999999999998887777888999999999999999999999999999
Q ss_pred CCCCCccceEEEEEEcCCCEEEEECCCCccccCc
Q 012912 417 GIPRTAYKGVVVFRYQTPRRIFLVGPDSLRQLGI 450 (453)
Q Consensus 417 gvpR~~Y~Gvv~~~~~~~~~v~lv~~~s~~~~~~ 450 (453)
|||||||+|||+|+|+ |+|||||||.+++.++.
T Consensus 400 GvpRtaY~GVV~~~~~-g~rv~lvp~~~~~~y~~ 432 (434)
T PF03071_consen 400 GVPRTAYKGVVTFFYK-GRRVFLVPPYSWSGYDP 432 (434)
T ss_dssp TEETT-BTTBEEEEET-TEEEEEE--TT--S--T
T ss_pred CCcccccceEEEEEEC-CEEEEEECCcchhhcCC
Confidence 9999999999999999 89999999999665543
No 2
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-100 Score=761.46 Aligned_cols=403 Identities=46% Similarity=0.808 Sum_probs=360.7
Q ss_pred HHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhcccccccCCCC
Q 012912 32 QMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERRGLERLVDKVQ 111 (453)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (453)
|+|++.+|+.+.+++..++|++|+|++.++.+.+..+.|.. .+..+.|.+. .+.+ ...+...++.
T Consensus 1 ~~r~t~~~~~~~~sl~~~~~~~~~~~~~~~~e~e~~~~q~~----~~~~~~ra~~--~~~~---------~~~~~p~~~~ 65 (411)
T KOG1413|consen 1 QNRLTRRASSKHDSLSKLIESANLCESVIRLEKEEQSRQIA----EADHKIRANR--VALE---------DLIQIPLKNW 65 (411)
T ss_pred CcccccccCccchhHHHhhHHHHHHHHHHHHhhhhHHHHHH----HHHhhhhhhh--ccCc---------ccccCcccCC
Confidence 68999999999999999999999999999997766443333 3333333322 1111 1222223567
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-Ccceeeeccc--cccC-CCCCCC
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KLTYMQHLDF--EPVH-ADNPGE 187 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~~~i~~~~~--~~in-~~~~~~ 187 (453)
+|++|||||+||||++|++|++.|+.++ |+++++||||||||.+.+|.+.+.+|. .+.+++|+.. .++. +...++
T Consensus 66 ~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~k 144 (411)
T KOG1413|consen 66 PPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHKK 144 (411)
T ss_pred CCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcccc
Confidence 8999999999999999999999999999 579999999999999999999999995 5677777632 2222 234577
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCC--Ccee
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHD--PYVL 265 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d--~~~l 265 (453)
+.+||+|||||+|||+++|..++++++|++|||+.++||||+||..+..+++.|++|||+|||||||++..+++ |+.+
T Consensus 145 ~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWNDNGk~~~Id~~~~~~l 224 (411)
T KOG1413|consen 145 FNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWNDNGKKQTIDSTRPSLL 224 (411)
T ss_pred cchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeeccCCCcccccccccchh
Confidence 89999999999999999999889999999999999999999999999999999999999999999999999877 9999
Q ss_pred eecCCCcccccccchhhhhhhCCCCCccchHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHhHHhhhcCCCCCCCc
Q 012912 266 YRSDFFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVP 345 (453)
Q Consensus 266 yRsdffpgwGWalwr~~W~el~p~WP~~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~f~~yl~~ikln~~~ 345 (453)
||||||||||||+.+++|+|++|+||.+|||||||.|++||+|+||+||+|||+++|..|++.||||++||++||+|+.+
T Consensus 225 YRtDFFpGLGWml~~~~W~ELsp~wP~~fWDDWmr~pe~rK~R~cIRPEiSRTmtyg~~G~S~GQfFsd~L~~IK~n~~~ 304 (411)
T KOG1413|consen 225 YRTDFFPGLGWMLTKKLWEELSPKWPVAFWDDWMRIPENRKGRQCIRPEISRTMTYGKKGSSEGQFFSDYLEKIKANDQQ 304 (411)
T ss_pred hhccccccchHHHHHHHHHhhCCCCcccchhhhhhchhhhccccccChHhhhhhhcccccccccccHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecCccccchhhHHHHHHHHHHhcCccccccccccccCCCCcEEEEeCChhHHHHHHHHcCcccccCCCCCCCccce
Q 012912 346 VDWKSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKDGIPRTAYKG 425 (453)
Q Consensus 346 v~f~~~dl~yL~~~~Yd~~~~~~v~~a~~i~~~~~~~~~~~~~~~~~i~Y~~~~~~~~~a~~~~~~~d~k~gvpR~~Y~G 425 (453)
|+|+++|++||.+++|++.+...|++|.+++.+++..+.....|+|||+|++..+|+++|+.||+|+|||+|||||||+|
T Consensus 305 v~fs~i~l~ylqk~~y~~~~~~~I~~ar~id~e~~~~~~~k~~~~vrI~Y~~~~e~~r~ak~l~lm~d~k~GvpRtaY~G 384 (411)
T KOG1413|consen 305 VKFSKIDLSYLQKSNYDKLFSIEIMRARPIDLEKLILDRDKSEGDVRIQYTNIMEFSRVAKELGLMHDLKKGVPRTAYIG 384 (411)
T ss_pred ccccccchHhhhhhhhhhHHHHHHHhcCcccHHHhhhhhhccccceeEEecchHHHHHHHHHhccHHHHhccCcccccce
Confidence 99999999999999999999999999999999998887777778899999999999999999999999999999999999
Q ss_pred EEEEEEcCCCEEEEECCCCccccCcC
Q 012912 426 VVVFRYQTPRRIFLVGPDSLRQLGIK 451 (453)
Q Consensus 426 vv~~~~~~~~~v~lv~~~s~~~~~~~ 451 (453)
||+|+++ |+||||||+.|+..++++
T Consensus 385 iVt~~in-~~Rv~Lvp~~s~~~y~~~ 409 (411)
T KOG1413|consen 385 IVTFLIN-GRRVFLVPPVSVMGYDIS 409 (411)
T ss_pred EEEEEEc-ceEEEecCCccccccCCC
Confidence 9999999 799999999996555543
No 3
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=100.00 E-value=1.3e-96 Score=746.44 Aligned_cols=329 Identities=51% Similarity=0.951 Sum_probs=310.8
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-CcceeeeccccccCCCCCCChhHHH
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KLTYMQHLDFEPVHADNPGELTAYY 192 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~~y~ 192 (453)
++||||+|||||+||+|||+||++++ |+++.++|||++||+++++.++++++. .++.++|+.....+.+...++.+|+
T Consensus 1 ~~PVlv~ayNRp~~l~r~LesLl~~~-p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 1 VIPVLVIACNRPDYLRRMLDSLLSYR-PSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred CcCEEEEecCCHHHHHHHHHHHHhcc-ccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhh
Confidence 47999999999999999999999987 468899999999999999999999884 5777888777766766666888999
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCC-CceeeecCCC
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHD-PYVLYRSDFF 271 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d-~~~lyRsdff 271 (453)
+||+||+||++++|+.++++++|||||||++|||||+||++++++|++|++|+||||||+||....+++ |..+|||+||
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~NdnG~~~~~~~~~~~lyrs~ff 159 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWNDNGKEHFVDDTPSLLYRTDFF 159 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeeccCCcccccCCCcceEEEecCC
Confidence 999999999999999888999999999999999999999999999999999999999999999887766 9999999999
Q ss_pred cccccccchhhhhhhCCCCCccchHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHhHHhhhcCCCCCCCcccceec
Q 012912 272 PGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPVDWKSR 351 (453)
Q Consensus 272 pgwGWalwr~~W~el~p~WP~~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~f~~yl~~ikln~~~v~f~~~ 351 (453)
||||||+||++|++++|+||..+||+|||.|++||||+||+||||||+|||..|+|.|+||++||++|++|+.+|+|.++
T Consensus 160 ~glGWml~r~~W~e~~~~wp~~~WD~w~R~~~~rkgr~cirPeisRt~~~g~~g~s~g~f~~~~l~~i~ln~~~v~~~~~ 239 (334)
T cd02514 160 PGLGWMLTRKLWKELEPKWPKAFWDDWMRLPEQRKGRECIRPEISRTYHFGKKGVSNGQFFDKYLKKIKLNTVFVVFTKL 239 (334)
T ss_pred CchHHHHHHHHHHHhCCCCCCCChHHhhcchhhhcCCccccCCcchheeccccccccchHHHHHhhcccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHhcCcccccccc---ccccCCCCcEEEEeCChhHHHHHHHHcCcccccCCCCCCCccceEEE
Q 012912 352 DLSYLIKDNYEKYFAEIVKKATPVHGENVV---LKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKDGIPRTAYKGVVV 428 (453)
Q Consensus 352 dl~yL~~~~Yd~~~~~~v~~a~~i~~~~~~---~~~~~~~~~~~i~Y~~~~~~~~~a~~~~~~~d~k~gvpR~~Y~Gvv~ 428 (453)
||+||.+++||+.++++|++|+++++.++. ...+++.+++||.|+++.+|+++|++||+|+|||+|||||+|+|||+
T Consensus 240 dl~~l~~~~y~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~a~~~~~~~~~k~g~~R~~y~gvv~ 319 (334)
T cd02514 240 DLSYLKKDNYDKEFHRLVYGAVVLDHEKNPCELSFVPDTEGKVRVVYTGRDDFKTWAKAFGVMDDLKDGVPRTAYKGIVR 319 (334)
T ss_pred CHHHHhHHHHHHHHHHHHhcCcccchhcccchhhcCcCCCCCEEEEECCHHHHHHHHHHhCcccccccCCcccceeEEEE
Confidence 999999999999999999999999999974 34567889999999999999999999999999999999999999999
Q ss_pred EEEcCCCEEEEECCCC
Q 012912 429 FRYQTPRRIFLVGPDS 444 (453)
Q Consensus 429 ~~~~~~~~v~lv~~~s 444 (453)
|+|+ |+||||||+.+
T Consensus 320 ~~~~-~~~v~lv~~~~ 334 (334)
T cd02514 320 FFFK-GNRVFLVPPPT 334 (334)
T ss_pred EEEC-CEEEEEeCCCC
Confidence 9999 89999999864
No 4
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=99.66 E-value=6.1e-15 Score=150.67 Aligned_cols=210 Identities=22% Similarity=0.414 Sum_probs=149.5
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeec--------------ccc
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHL--------------DFE 178 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~--------------~~~ 178 (453)
+.+.|||-+.|||+||+.+|+||.++++ .++.-|++|.|+..+|..+++++++ +|-+.++ +..
T Consensus 31 ~~~vivvqVH~r~~yl~~li~sL~~~~~--I~~~llifSHd~~~~ein~~v~~I~-Fc~v~QIf~P~S~ql~p~~FPG~d 107 (356)
T PF05060_consen 31 DSIVIVVQVHNRPEYLKLLIDSLSQARG--IEEALLIFSHDFYSEEINDLVQSID-FCRVMQIFYPYSIQLYPNEFPGQD 107 (356)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHhhC--ccceEEEEeccCChHHHHHHHHhCC-cceeEEEecccchhhCCCCCCCCC
Confidence 5578899999999999999999999975 6888999999999999999999986 5533221 111
Q ss_pred c------c------CCCC-----CCCh-----hHHHHHHHHHHHHHHHHhhhcC-----CcEEEEEccCceeChhHHHHH
Q 012912 179 P------V------HADN-----PGEL-----TAYYKIARHYKWALDNLFYKHN-----FSRVIILEDDMEIAPDFFDYF 231 (453)
Q Consensus 179 ~------i------n~~~-----~~~~-----~~y~~IarHYk~aLs~vF~~~~-----~~~vIILEDDl~~SPDFf~Yf 231 (453)
| + .++| +..+ ..+..+.+|+.|-++.||+.+. -+.||+||||-.++|||+..+
T Consensus 108 P~DCpr~i~k~~a~~~~C~na~~pD~yGhyRea~~tq~KHHWWWk~n~Vf~~l~~~~~~~g~v~fLEEDhyv~pD~l~~l 187 (356)
T PF05060_consen 108 PNDCPRDIKKEDALKLGCNNAEYPDSYGHYREAKFTQIKHHWWWKLNFVFDGLEETRNHNGWVLFLEEDHYVAPDFLHVL 187 (356)
T ss_pred cccccccccHhHHHhccCCCCCCccccCCcccccchhhhHHHHHHHHHHHHhhhhhccCCceEEEEecccccchhHHHHH
Confidence 0 0 1112 1111 1234689999999999999752 378999999999999999988
Q ss_pred HHHHHhhc---CCCcEEEEecCCC-CCCCcccCCCceeeecCC---CcccccccchhhhhhhCC------CCCccchHHH
Q 012912 232 EAAADLLD---KDKSIMAVSSWND-NGQKQFVHDPYVLYRSDF---FPGLGWMLTRTTWDELSP------KWPKAYWDDW 298 (453)
Q Consensus 232 ~~~l~ly~---~D~sI~~ISawNd-ng~~~~v~d~~~lyRsdf---fpgwGWalwr~~W~el~p------~WP~~~WDdW 298 (453)
..+...-+ .+-.|.+.++|.- ++.. .++..+-.+-+ .+.+|.|+.|++|+.+.. .+.+-.||-=
T Consensus 188 ~~~~~~~~~~cp~c~~~sLG~y~~~~~~~---~~~~~v~~~~W~SskHNmGmAfNRs~W~kI~~ca~~FC~yDDYNWDwS 264 (356)
T PF05060_consen 188 RLMIKLKKSECPDCDILSLGTYDKSNGYQ---SDPNKVEVTPWISSKHNMGMAFNRSTWNKIKSCADEFCTYDDYNWDWS 264 (356)
T ss_pred HHHHHHhhhcCCCCCEEeccCCccccccc---cccceeeeeccccccccceeEecHHHHHHHHHHHHHhCCCCCCCchHH
Confidence 88776653 4556777778873 2221 12222222222 348999999999998763 2555567543
Q ss_pred HHH---HHhhcCCceeecCCcceeccCCCCCCh
Q 012912 299 LRL---KENHKGRQFIRPEVCRTYNFGEHGSSL 328 (453)
Q Consensus 299 lR~---~~~rkgr~cI~PevSRt~niG~~G~s~ 328 (453)
|.. +...+....++|..+|++|+|..|.|.
T Consensus 265 L~~ls~~cl~~~~kvL~~~~PRV~HiGdCGlH~ 297 (356)
T PF05060_consen 265 LQHLSQRCLPSPLKVLVPKGPRVFHIGDCGLHH 297 (356)
T ss_pred HHHHHhhccCCccEEEEEccCcEEEcccccccc
Confidence 433 233455678899999999999999974
No 5
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.5e-12 Score=130.84 Aligned_cols=213 Identities=19% Similarity=0.315 Sum_probs=146.0
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccc--------------
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDF-------------- 177 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~-------------- 177 (453)
...+-++|-+.|||+||+-++|||+++++ .+++-||+|.||...+..++|+++. +|.+.++.+
T Consensus 116 ~~~~vlV~qVHnRp~Ylr~lveSlrk~kG--I~~tLlifSHD~~~~eiN~~I~~i~-Fc~V~QiF~Pys~qlypt~FPG~ 192 (455)
T KOG2791|consen 116 KDRVVLVLQVHNRPQYLRVLVESLRKVKG--ISETLLIFSHDGYFEEINRIIESIK-FCQVKQIFSPYSPQLYPTSFPGV 192 (455)
T ss_pred cceEEEEEEEcCcHHHHHHHHHHHHhccC--ccceEEEEeccchHHHHHHHHhhcc-cceeEEEecCCCcccccCcCCCC
Confidence 34466788899999999999999999885 6888999999999999999999875 554433211
Q ss_pred cc----c--------CCCC-----CCChhHH-----HHHHHHHHHHHHHHhhhc-----CCcEEEEEccCceeChhHHHH
Q 012912 178 EP----V--------HADN-----PGELTAY-----YKIARHYKWALDNLFYKH-----NFSRVIILEDDMEIAPDFFDY 230 (453)
Q Consensus 178 ~~----i--------n~~~-----~~~~~~y-----~~IarHYk~aLs~vF~~~-----~~~~vIILEDDl~~SPDFf~Y 230 (453)
.+ . ..+| +.++..| ..+.+|+.|-++.||+.. ..+.+++||+|--++|||+.-
T Consensus 193 ~p~DCp~kmkk~~a~k~~C~n~ssPD~yGnyR~ak~~q~KHHWWWkmnfVwd~ve~~~~~~g~iLflEEDH~LaPdayhv 272 (455)
T KOG2791|consen 193 TPNDCPNKMKKGDAAKGHCENNSSPDQYGNYRSAKIVQLKHHWWWKMNFVWDGVEETKGHEGHILFLEEDHFLAPDAYHV 272 (455)
T ss_pred CchhcccccccchhhhcCCcCCCCcccccCccchhhhhhhhhhhHhHHHHHHHHHHhccCCceEEEEecccccChhHHHH
Confidence 00 0 0011 1112111 257899999999999853 247899999999999999999
Q ss_pred HHHHHHh---hcCCCcEEEEecC-CCCCCCcccCCCceeeecCCCcccccccchhhhhhhCC------CCCccchH--HH
Q 012912 231 FEAAADL---LDKDKSIMAVSSW-NDNGQKQFVHDPYVLYRSDFFPGLGWMLTRTTWDELSP------KWPKAYWD--DW 298 (453)
Q Consensus 231 f~~~l~l---y~~D~sI~~ISaw-Ndng~~~~v~d~~~lyRsdffpgwGWalwr~~W~el~p------~WP~~~WD--dW 298 (453)
+..+-.+ +-.|-.+.+..-| .-+.+.+-..+...++- -.+.+|.++.|.+|+.+.. +|.+-.|| .|
T Consensus 273 ~~~l~~lkp~~Cp~C~~~sLg~y~s~sryGqD~~~v~~w~s--~~hNmG~al~rn~wqki~~c~~~FC~~DDYNWDwtl~ 350 (455)
T KOG2791|consen 273 IQTLTRLKPAKCPDCFAASLGPYDSKSRYGQDEGLVSLWAS--RMHNMGYALNRNVWQKIHQCAREFCFFDDYNWDWTLW 350 (455)
T ss_pred HHHHHhcCcccCCcceeeecccccccccccccccceeehhh--hcccchhhhhHHHHHHHHHhHHhhcccccCCcceeeh
Confidence 8775543 4445555555555 22211111112222332 3578999999999998753 35554453 23
Q ss_pred H-HHHHhhcCCceeecCCcceeccCCCCCChh
Q 012912 299 L-RLKENHKGRQFIRPEVCRTYNFGEHGSSLG 329 (453)
Q Consensus 299 l-R~~~~rkgr~cI~PevSRt~niG~~G~s~~ 329 (453)
- --++..+--+.|+|..+|+.|||..|.|.+
T Consensus 351 ~~~~~clp~~~~vl~~~~pr~~H~GdCG~H~~ 382 (455)
T KOG2791|consen 351 ATVFPCLPSPVYVLRGPRPRAVHFGDCGLHQG 382 (455)
T ss_pred hhhccccCcceEEeecCCCceEEecccccccC
Confidence 2 234566667789999999999999999876
No 6
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.08 E-value=3.5e-09 Score=98.37 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=114.1
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCCCCh
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~~~~ 188 (453)
|.+.|||++||..+++.++|+||+++.. ..++|+|..|++.+++.++++.+ .... ++... .+.+.|..+
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~---~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~-~~~~~-~~~~~g~~~-- 73 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDY---PKYEILFCVQDEDDPAIPVVRKLIAKYPNVD-ARLLI-GGEKVGINP-- 73 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccC---CCeEEEEEeCCCcchHHHHHHHHHHHCCCCc-EEEEe-cCCcCCCCH--
Confidence 4578999999999999999999998543 34899999999998887776654 2211 11111 111222211
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeec
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRS 268 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRs 268 (453)
+ +. +++..+....++.++++++|+.++|++++.+...+ .++.+.+|++.
T Consensus 74 ----~-~~----~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~----~~~~~~~v~~~------------------ 122 (196)
T cd02520 74 ----K-VN----NLIKGYEEARYDILVISDSDISVPPDYLRRMVAPL----MDPGVGLVTCL------------------ 122 (196)
T ss_pred ----h-HH----HHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHh----hCCCCCeEEee------------------
Confidence 0 11 33333444458999999999999999999776654 36778888876
Q ss_pred CCCcccccccchhhhhhhCCCCCc---c-chHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHhHHh
Q 012912 269 DFFPGLGWMLTRTTWDELSPKWPK---A-YWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQ 334 (453)
Q Consensus 269 dffpgwGWalwr~~W~el~p~WP~---~-~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~f~~ 334 (453)
+..|-+.++.|+.|+++. .|+. . ..|.++.....++|..+.+.....+.+.+ +.+...++.+
T Consensus 123 -~~~g~~~~~r~~~~~~~g-gf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~--~~~~~~~~~q 188 (196)
T cd02520 123 -CAFGKSMALRREVLDAIG-GFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLG--STSLASFWRR 188 (196)
T ss_pred -cccCceeeeEHHHHHhcc-ChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCC--cccHHHHHHH
Confidence 234556677777777653 2221 1 22444444456677776664445565544 5566666665
No 7
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.06 E-value=4.7e-09 Score=92.24 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=90.0
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
|+|++|||++.+.++|+||.++.. ....|+|..||+.+++.+.+..+.. .++.... +.+.|.. .
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~---~~~~iiivdd~s~~~~~~~~~~~~~--~~~~~~~-~~~~g~~----------~ 64 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTY---PDFEVIVVDNASTDGSVELLRELFP--EVRLIRN-GENLGFG----------A 64 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccC---CCeEEEEEECCCCchHHHHHHHhCC--CeEEEec-CCCcChH----------H
Confidence 689999999999999999999643 4578999999999888887776532 1221111 1132221 1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeecCCCccccc
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRSDFFPGLGW 276 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRsdffpgwGW 276 (453)
|++..+...+++.++++|||+.++|+++..+.+. +..++.+..+++. +.|-++
T Consensus 65 ----a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~---~~~~~~~~~~~~~--------------------~~~~~~ 117 (166)
T cd04186 65 ----GNNQGIREAKGDYVLLLNPDTVVEPGALLELLDA---AEQDPDVGIVGPK--------------------VSGAFL 117 (166)
T ss_pred ----HhhHHHhhCCCCEEEEECCCcEECccHHHHHHHH---HHhCCCceEEEcc--------------------CceeeE
Confidence 4444444446899999999999999998766654 5556777777665 445666
Q ss_pred ccchhhhhhhC
Q 012912 277 MLTRTTWDELS 287 (453)
Q Consensus 277 alwr~~W~el~ 287 (453)
+..++.|+++.
T Consensus 118 ~~~~~~~~~~~ 128 (166)
T cd04186 118 LVRREVFEEVG 128 (166)
T ss_pred eeeHHHHHHcC
Confidence 77777777653
No 8
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.01 E-value=8.4e-09 Score=95.27 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=92.4
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
|||++||+++++.+||+||+++..+ .++|+|..||+.+.|.++++.+.....++.... +.|.|.. .
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~---~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~-~~n~g~~----------~ 66 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRP---PDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRL-PENLGGA----------G 66 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCC---CceEEEEECCCCcchHHHHHHhcCCCceEEEEC-ccccchh----------h
Confidence 6899999999999999999996532 468999999999999999988753221222211 2233321 1
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeecCCCccccc
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRSDFFPGLGW 276 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRsdffpgwGW 276 (453)
-.+.|++.+. ..+++.+++++||+.+.|++++-+.+.+. ++.+.++.+.-... +. +..|+
T Consensus 67 ~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~------~~---------~~~~~ 126 (202)
T cd04185 67 GFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYAD----KDNPQFLAPLVLDP------DG---------SFVGV 126 (202)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHh----cCCceEecceeEcC------CC---------ceEEE
Confidence 1223555444 23589999999999999998876665544 55565555432111 11 45778
Q ss_pred ccchhhhhhhC
Q 012912 277 MLTRTTWDELS 287 (453)
Q Consensus 277 alwr~~W~el~ 287 (453)
+..|+.|+++.
T Consensus 127 ~~~~~~~~~~g 137 (202)
T cd04185 127 LISRRVVEKIG 137 (202)
T ss_pred EEeHHHHHHhC
Confidence 88999998764
No 9
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.01 E-value=6.7e-09 Score=95.64 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=107.5
Q ss_pred eEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCc--ceeeeccccccCCCCCCChhHHHH
Q 012912 116 AVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKL--TYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 116 PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~--~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
.|+|++|||+++|.+||+||+++.. ..++|+|..||+.++|.++++.+..- ..+..... +.+.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~---~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~-~~~~G---------- 66 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTY---KNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRN-GKNLG---------- 66 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcC---CCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeC-CCCcc----------
Confidence 3799999999999999999999643 36899999999998888888876311 11222111 11222
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCC----CCCCCcc-c---CC----
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWN----DNGQKQF-V---HD---- 261 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawN----dng~~~~-v---~d---- 261 (453)
.++..+.|+. ..+.+.++++++|..+.|+++.-+.+. +..++...++.+.- .++.... . ..
T Consensus 67 ~~~~~n~g~~----~~~g~~v~~ld~Dd~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (214)
T cd04196 67 VARNFESLLQ----AADGDYVFFCDQDDIWLPDKLERLLKA---FLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKP 139 (214)
T ss_pred HHHHHHHHHH----hCCCCEEEEECCCcccChhHHHHHHHH---HhcCCCceEEecCcEEECCCCCCcccccccccccCC
Confidence 2333333433 335899999999999999988865554 44566665555531 1111100 0 00
Q ss_pred ---CceeeecCCCcccccccchhhhhhhCCCCCc--cchHHHHHHHHhhcCCceeecCCc
Q 012912 262 ---PYVLYRSDFFPGLGWMLTRTTWDELSPKWPK--AYWDDWLRLKENHKGRQFIRPEVC 316 (453)
Q Consensus 262 ---~~~lyRsdffpgwGWalwr~~W~el~p~WP~--~~WDdWlR~~~~rkgr~cI~PevS 316 (453)
...++....+++-+.+++|+.++++.+.-+. .+.|.++.......|+....|+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 199 (214)
T cd04196 140 GTSFNNLLFQNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASAFGKVVFLDEPL 199 (214)
T ss_pred ccCHHHHHHhCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHHcCceEEcchhH
Confidence 0111122355678888999999886543332 122334333344445545556543
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.95 E-value=1.4e-08 Score=95.16 Aligned_cols=199 Identities=20% Similarity=0.238 Sum_probs=117.5
Q ss_pred ceeeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHH
Q 012912 113 PVAAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAY 191 (453)
Q Consensus 113 p~~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y 191 (453)
|.+.|+|++||++ +.++++|+||+++..+ .++++|+|..||+.+++.++++++..-..+..... +.+.+. .
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~-~~~~~~----~-- 72 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYP-HDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTR-PDNRHA----K-- 72 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCC-cccEEEEEEcCCCchhHHHHHHHhhcccCceEEEe-CCCCCC----c--
Confidence 4578999999985 8899999999996543 33479999999999999999988742111111111 112211 1
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC----CCCCCCccc--------
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW----NDNGQKQFV-------- 259 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw----Ndng~~~~v-------- 259 (453)
+. +++..++..+++.++++++|..+.||++.-+... +.+++.+.++++- +..+.....
T Consensus 73 ---~~----~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (234)
T cd06421 73 ---AG----NLNNALAHTTGDFVAILDADHVPTPDFLRRTLGY---FLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQE 142 (234)
T ss_pred ---HH----HHHHHHHhCCCCEEEEEccccCcCccHHHHHHHH---HhcCCCeEEEecceEEecCCcchhHHHHHHHHHH
Confidence 11 2233333335899999999999999988765554 4556888877763 111110000
Q ss_pred ------CCCceeeecCCCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhhcCCceeecCCcceeccCCCCCChh
Q 012912 260 ------HDPYVLYRSDFFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLG 329 (453)
Q Consensus 260 ------~d~~~lyRsdffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~ 329 (453)
..........++.|.|.+..|++++++.. ++. .+++.++| ...+|....+-...++.+-. ..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~-~~~~~~~eD~~l~~r--~~~~g~~i~~~~~~~~~~~~--~~~~~ 217 (234)
T cd06421 143 LFYGVIQPGRDRWGAAFCCGSGAVVRREALDEIGG-FPTDSVTEDLATSLR--LHAKGWRSVYVPEPLAAGLA--PETLA 217 (234)
T ss_pred HHHHHHHHHHhhcCCceecCceeeEeHHHHHHhCC-CCccceeccHHHHHH--HHHcCceEEEecCccccccC--CccHH
Confidence 00001112345678899999999988642 222 23333444 45567665553334554432 33444
Q ss_pred HhHHh
Q 012912 330 QFFQQ 334 (453)
Q Consensus 330 ~~f~~ 334 (453)
.++.+
T Consensus 218 ~~~~q 222 (234)
T cd06421 218 AYIKQ 222 (234)
T ss_pred HHHHH
Confidence 44444
No 11
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.93 E-value=9.8e-09 Score=89.10 Aligned_cols=150 Identities=18% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCc--ceeeeccccccCCCCCCChhHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKL--TYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~--~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
|+|++||+++++.+||+||+++. ...++|+|..||+.+++.+.+..+... ..+... ..+.+.|.
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~---~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~-~~~~~~g~---------- 66 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALD---YPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVV-RDKENGGK---------- 66 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCC---CCceEEEEEeCCCccchHHHHHHHhccccceEEEE-EecccCCc----------
Confidence 68999999999999999999953 256799999999998888888776321 111111 11113222
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCc--cc--------CCCc-
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQ--FV--------HDPY- 263 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~--~v--------~d~~- 263 (453)
++..++|+..+ +.+.++++++|..+.|++++-+ +..+..++.+.++++........ .. ....
T Consensus 67 ~~~~n~~~~~~----~~~~i~~~D~D~~~~~~~l~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (180)
T cd06423 67 AGALNAGLRHA----KGDIVVVLDADTILEPDALKRL---VVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFR 139 (180)
T ss_pred hHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH---HHHhccCCCeeeEeeeEEEecCcCcceeccchheecceee
Confidence 22233455544 5899999999999999988866 33455677787777665432211 00 0000
Q ss_pred -------eeeecCCCcccccccchhhhhhhC
Q 012912 264 -------VLYRSDFFPGLGWMLTRTTWDELS 287 (453)
Q Consensus 264 -------~lyRsdffpgwGWalwr~~W~el~ 287 (453)
......+++|.+++..|+.|+++.
T Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 140 LGRRAQSALGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred eeeehhheecceeecCchHHHHHHHHHHHhC
Confidence 011123456777888888888765
No 12
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.91 E-value=2.4e-08 Score=90.32 Aligned_cols=179 Identities=20% Similarity=0.188 Sum_probs=110.3
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC-cceeeeccccccCCCCCCChhHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK-LTYMQHLDFEPVHADNPGELTAYYKIA 195 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~-~~~i~~~~~~~in~~~~~~~~~y~~Ia 195 (453)
|+|++||+++++.+||+||.++.. ..++|+|..||+.+++.++++++.. ...+.+ ++ +.| .+
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~---~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~---~~-~~g----------~~ 64 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTY---PNIEYIVIDGGSTDGTVDIIKKYEDKITYWIS---EP-DKG----------IY 64 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCC---CCceEEEEeCCCCccHHHHHHHhHhhcEEEEe---cC-CcC----------HH
Confidence 789999999999999999998543 3489999999999999998888742 122211 11 211 23
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC----CCCCccc-----CCCceee
Q 012912 196 RHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND----NGQKQFV-----HDPYVLY 266 (453)
Q Consensus 196 rHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd----ng~~~~v-----~d~~~ly 266 (453)
...+.|+.. ...+.++++++|+.+.|+.+.-+- ..+..++.+..|+|... ++..... .....+.
T Consensus 65 ~a~n~~~~~----a~~~~v~~ld~D~~~~~~~~~~~~---~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (202)
T cd06433 65 DAMNKGIAL----ATGDIIGFLNSDDTLLPGALLAVV---AAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLL 137 (202)
T ss_pred HHHHHHHHH----cCCCEEEEeCCCcccCchHHHHHH---HHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHh
Confidence 334445543 357999999999999998877555 33334455555544321 1111110 1111223
Q ss_pred ecCCCcccccccchhhhhhhCCCCCc-----cchHHHHHHHHhhcCCce-eecCCcceeccC
Q 012912 267 RSDFFPGLGWMLTRTTWDELSPKWPK-----AYWDDWLRLKENHKGRQF-IRPEVCRTYNFG 322 (453)
Q Consensus 267 RsdffpgwGWalwr~~W~el~p~WP~-----~~WDdWlR~~~~rkgr~c-I~PevSRt~niG 322 (453)
...++++-|++..|+.|+++.. |+. .+||-|+| ..+.|..- ..|+.-.....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~D~~~~~r--~~~~g~~~~~~~~~~~~~~~~ 196 (202)
T cd06433 138 YGMPICHQATFFRRSLFEKYGG-FDESYRIAADYDLLLR--LLLAGKIFKYLPEVLAAFRLG 196 (202)
T ss_pred hcCcccCcceEEEHHHHHHhCC-CchhhCchhhHHHHHH--HHHcCCceEecchhhhhheec
Confidence 3446678889999999998752 332 24555565 44455544 445554444444
No 13
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.91 E-value=2.7e-08 Score=95.01 Aligned_cols=201 Identities=19% Similarity=0.207 Sum_probs=117.2
Q ss_pred ccCCCCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCC
Q 012912 106 LVDKVQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNP 185 (453)
Q Consensus 106 ~~~~~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~ 185 (453)
..++..+|.+.|+|++||+.+.+.+||++|.++..+ ...++|+|..||+.+++.++++.+... .++.... +.+.|..
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~-~v~~i~~-~~~~g~~ 98 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYP-RDRLEIIVVSDGSTDGTAEIAREYADK-GVKLLRF-PERRGKA 98 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCC-CCcEEEEEEECCCCccHHHHHHHHhhC-cEEEEEc-CCCCChH
Confidence 444566888999999999999999999999986542 344799999999999999988887421 2222211 1132211
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC----CCCCCCcc---
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW----NDNGQKQF--- 258 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw----Ndng~~~~--- 258 (453)
+ |++..+.....+.++++++|+.+.|+++.-+.+.+ . ++.+.+|++- +.++....
T Consensus 99 ----~----------a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~---~-~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (251)
T cd06439 99 ----A----------ALNRALALATGEIVVFTDANALLDPDALRLLVRHF---A-DPSVGAVSGELVIVDGGGSGSGEGL 160 (251)
T ss_pred ----H----------HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHh---c-CCCccEEEeEEEecCCcccchhHHH
Confidence 1 34444444457999999999999999888555554 4 4555555542 22210000
Q ss_pred -------cCC-CceeeecCCCcccccccchhhhhhhCCCCCcc--chHHHHHHHHhhcCCceeecCCcceeccCCCCCCh
Q 012912 259 -------VHD-PYVLYRSDFFPGLGWMLTRTTWDELSPKWPKA--YWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSL 328 (453)
Q Consensus 259 -------v~d-~~~lyRsdffpgwGWalwr~~W~el~p~WP~~--~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~ 328 (453)
... ..........+|.+-+..|+.++. |+.. ..|.++......+|..+.+..-..+++-+ +.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~----~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~--~~~~ 234 (251)
T cd06439 161 YWKYENWLKRAESRLGSTVGANGAIYAIRRELFRP----LPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEV--AEDG 234 (251)
T ss_pred HHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcC----CCcccchhHHHHHHHHHHcCCeEEeccccEEEEeC--cccH
Confidence 000 000001111223334466777773 3332 22334444466778777765555565544 4444
Q ss_pred hHhHH
Q 012912 329 GQFFQ 333 (453)
Q Consensus 329 ~~~f~ 333 (453)
+..+.
T Consensus 235 ~~~~~ 239 (251)
T cd06439 235 SEEFR 239 (251)
T ss_pred HHHHH
Confidence 44444
No 14
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.87 E-value=3.7e-08 Score=88.97 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=98.8
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCc--ceeeeccccccCCCCCCChhHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKL--TYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~--~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
|||++||+++.+++||+||.++. ...++|+|..||+.+.+.++++++... ..+.+....+ . ++ ..
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~---~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~----~~----~~ 67 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQS---ILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQED--E----GF----RK 67 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhcc---CCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCC--c----ch----hH
Confidence 68999999999999999999954 235789999999999888888766320 0111111111 1 11 12
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeecCCCccc
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRSDFFPGL 274 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRsdffpgw 274 (453)
+...+.|+. ....+.++++++|+.++|+|++-+.+.+ ++.+..+++. ......... ..+.+-
T Consensus 68 ~~~~n~g~~----~a~g~~i~~lD~D~~~~~~~l~~~~~~~-----~~~~~v~g~~-~~~~~~~~~--------~~~~~~ 129 (182)
T cd06420 68 AKIRNKAIA----AAKGDYLIFIDGDCIPHPDFIADHIELA-----EPGVFLSGSR-VLLNEKLTE--------RGIRGC 129 (182)
T ss_pred HHHHHHHHH----HhcCCEEEEEcCCcccCHHHHHHHHHHh-----CCCcEEecce-eecccccce--------eEeccc
Confidence 332233443 3357999999999999999988665543 3344333322 211111100 234566
Q ss_pred ccccchhhhhhhC---CCCC---ccchHHHHHHHHhhcC--CceeecCCcceec
Q 012912 275 GWMLTRTTWDELS---PKWP---KAYWDDWLRLKENHKG--RQFIRPEVCRTYN 320 (453)
Q Consensus 275 GWalwr~~W~el~---p~WP---~~~WDdWlR~~~~rkg--r~cI~PevSRt~n 320 (453)
+.+.+|+.|.++. +.+- ..++|.++| ..++| ..++.| -..++|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r--~~~~g~~~~~~~~-~~~~~h 180 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVAR--LLNSGIKFRKLKF-AAIVFH 180 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHH--HHHcCCcEEEecc-cceeee
Confidence 6778888887543 3221 224555555 33444 344555 334444
No 15
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.85 E-value=1.3e-07 Score=94.65 Aligned_cols=193 Identities=13% Similarity=0.202 Sum_probs=107.1
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCCh--hHHHHHhhcCCcceeeeccccccCCCCCCCh
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNP--QVKSKALSYDKLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~--et~~vi~s~~~~~~i~~~~~~~in~~~~~~~ 188 (453)
++|.+.|+|++||+++++.++|+|++++. ...++|+|..||+.+ .+.+.++.+... .++.... +.|.|
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt---~~~~EiIVVDDgS~~~~~~~~~~~~~~~~-ri~~i~~-~~n~G----- 72 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQD---YSNWEMIIVDDCSTSWEQLQQYVTALNDP-RITYIHN-DINSG----- 72 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCC---CCCeEEEEEECCCCCHHHHHHHHHHcCCC-CEEEEEC-CCCCC-----
Confidence 46889999999999999999999999854 346899999999973 344555544211 1222211 11322
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec-CCCCCC----Cccc---C
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS-WNDNGQ----KQFV---H 260 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa-wNdng~----~~~v---~ 260 (453)
.+. |.+..+.....+.+++|++|..+.|+.++-+-+.+....... +..+. .-..|. .... .
T Consensus 73 -----~~~----a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p 141 (279)
T PRK10018 73 -----ACA----VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHA--FLYANDYVCQGEVYSQPASLPLYP 141 (279)
T ss_pred -----HHH----HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCcc--EEEccceeecCcccccccccCCCC
Confidence 122 333333334589999999999999999876555443221111 11111 000110 0000 0
Q ss_pred ----CCceeeecCCCcccccccchhhhhh--hCCCCCc-cchHHHHHHHHhhcCCceeecCCcceeccCCCCC
Q 012912 261 ----DPYVLYRSDFFPGLGWMLTRTTWDE--LSPKWPK-AYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGS 326 (453)
Q Consensus 261 ----d~~~lyRsdffpgwGWalwr~~W~e--l~p~WP~-~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~ 326 (453)
....+++..+++... +.++..... +++..+. .+||.|+|... ..+..+..|+...+++++..+.
T Consensus 142 ~~~~~~~~~~~~n~ig~~~-~~~~~~~~~~~fd~~~~~~eDydlwlrl~~-~~~~~~~~~~~l~~y~~~~~s~ 212 (279)
T PRK10018 142 KSPYSRRLFYKRNIIGNQV-FTWAWRFKECLFDTELKAAQDYDIFLRMVV-EYGEPWKVEEATQILHINHGEM 212 (279)
T ss_pred CCCCCHHHHHHhcCcCcee-eehhhhhhhcccCCCCCccccHHHHHHHHH-hcCceEeeccceEEEEcCCCCc
Confidence 011122222333332 333333322 4455553 58999999643 2244455799878888865444
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.81 E-value=2.2e-07 Score=87.57 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=112.1
Q ss_pred eeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC-cceeeeccccccCCCCCCChhHHHH
Q 012912 115 AAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK-LTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 115 ~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~-~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
+.|||++||+++++.++|++|.++..+ ...++|+|..||+.+++.+.++.+.. ...++.+.. + +.+.
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~-~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~-~-~~~~--------- 69 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYP-KDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDN-P-KRIQ--------- 69 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCC-CCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeC-C-CCCc---------
Confidence 579999999999999999999985432 36789999999999988888887642 112222211 1 1111
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCc---------------c
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQ---------------F 258 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~---------------~ 258 (453)
+.-.+.|+.. .+++.+++++||+.+.|++++-+...+ .. +.+.++.+........ .
T Consensus 70 -~~a~N~g~~~----a~~d~v~~lD~D~~~~~~~l~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (249)
T cd02525 70 -SAGLNIGIRN----SRGDIIIRVDAHAVYPKDYILELVEAL---KR-TGADNVGGPMETIGESKFQKAIAVAQSSPLGS 140 (249)
T ss_pred -hHHHHHHHHH----hCCCEEEEECCCccCCHHHHHHHHHHH---hc-CCCCEEecceecCCCChHHHHHHHHhhchhcc
Confidence 1112334444 358999999999999999998766533 32 3333333332211000 0
Q ss_pred cCCCceeee---cCCCcccccccchhhhhhhC---CCCC-ccchHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHh
Q 012912 259 VHDPYVLYR---SDFFPGLGWMLTRTTWDELS---PKWP-KAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQF 331 (453)
Q Consensus 259 v~d~~~lyR---sdffpgwGWalwr~~W~el~---p~WP-~~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~ 331 (453)
......... ....++.+-+..|+.|+++. +... ..+|+.++| ..++|....+..-..+.+... .+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r--~~~~G~~~~~~~~~~~~~~~~--~s~~~~ 216 (249)
T cd02525 141 GGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYR--LRKAGYKIWLSPDIRVYYYPR--STLKKL 216 (249)
T ss_pred CCccccccccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHH--HHHcCcEEEEcCCeEEEEcCC--CCHHHH
Confidence 000000110 11234555566788888754 1111 135555555 556677777533344444332 455565
Q ss_pred HHhhh
Q 012912 332 FQQYL 336 (453)
Q Consensus 332 f~~yl 336 (453)
+.+++
T Consensus 217 ~~~~~ 221 (249)
T cd02525 217 ARQYF 221 (249)
T ss_pred HHHHH
Confidence 55543
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.81 E-value=7.7e-08 Score=88.36 Aligned_cols=177 Identities=20% Similarity=0.231 Sum_probs=102.6
Q ss_pred ceeeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChh-HHHHHhhc----CCcceeeeccccccCCCCCC
Q 012912 113 PVAAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQ-VKSKALSY----DKLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 113 p~~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~e-t~~vi~s~----~~~~~i~~~~~~~in~~~~~ 186 (453)
|.+.|||++||+. +++.+||+||+++.. ..++|+|..||+.++ +..+++.+ ..+..+.+ +.+.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~---~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~----~~~~g--- 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTY---PNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFR----EENGG--- 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcC---CCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEc----ccCCC---
Confidence 4578999999999 999999999998542 346899999998664 55555554 12222211 11221
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC----CCCC--cccC
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND----NGQK--QFVH 260 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd----ng~~--~~v~ 260 (453)
.++ |++..+.....+.++++++|+.+.|++++-+.+.+ ..++.+..+.+.-. ++.. ....
T Consensus 71 -------~~~----a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 136 (202)
T cd04184 71 -------ISA----ATNSALELATGEFVALLDHDDELAPHALYEVVKAL---NEHPDADLIYSDEDKIDEGGKRSEPFFK 136 (202)
T ss_pred -------HHH----HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH---HhCCCCCEEEccHHhccCCCCEeccccC
Confidence 122 44444444457999999999999999998766654 33444433322111 1110 0000
Q ss_pred --CCceeeecCCCcccccccchhhhhhhC---CCCCc-cchHHHHHHHHhhcCC-ceeecCC
Q 012912 261 --DPYVLYRSDFFPGLGWMLTRTTWDELS---PKWPK-AYWDDWLRLKENHKGR-QFIRPEV 315 (453)
Q Consensus 261 --d~~~lyRsdffpgwGWalwr~~W~el~---p~WP~-~~WDdWlR~~~~rkgr-~cI~Pev 315 (453)
-....+....+.+-+++..|+.|+++. +.... .+||.|+|.. .+|. .+..|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~--~~g~~~~~~~~~ 196 (202)
T cd04184 137 PDWSPDLLLSQNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVS--EHTDRIAHIPRV 196 (202)
T ss_pred CCCCHHHhhhcCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHH--hccceEEEccHh
Confidence 011112222344556678899998753 33322 3677788743 3343 3445653
No 18
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.81 E-value=7.3e-08 Score=88.61 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=96.5
Q ss_pred eEEEEecCch--HHHHHHHHHHHhccCCCCCCccEEEeeCCC-ChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHH
Q 012912 116 AVVIMACNRA--NYLERTINSVFKYQGSVASKYPLFVSQDGS-NPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYY 192 (453)
Q Consensus 116 PIlI~a~NRP--~~l~R~LesL~k~~~~~~~~~~LiVsqDG~-~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~ 192 (453)
.|+|.+||+. +++.+||+||+++.. ..++|+|..||+ .+.+.++++++..-..++.... +.|.|.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~---~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~-~~n~G~-------- 68 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTL---PPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPL-EKNRGL-------- 68 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCC---CCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEc-CccccH--------
Confidence 3799999985 699999999999643 246899999998 5668888887732111222211 113221
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC----CCCCccc-CCC-----
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND----NGQKQFV-HDP----- 262 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd----ng~~~~v-~d~----- 262 (453)
+. |.+..+.....+.++++++|+.+.|++++-+-+. +.+++.+..+++... ++..... ..+
T Consensus 69 --~~----a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (201)
T cd04195 69 --GK----ALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDF---IEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDD 139 (201)
T ss_pred --HH----HHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHH---HHhCCCeEEEcccEEEECCCCCeeccccCCCCHHH
Confidence 12 3333333335899999999999999988865554 445666655555432 1111100 000
Q ss_pred --ceeeecCCCcccccccchhhhhhhC---CCCCccchHHHHHH
Q 012912 263 --YVLYRSDFFPGLGWMLTRTTWDELS---PKWPKAYWDDWLRL 301 (453)
Q Consensus 263 --~~lyRsdffpgwGWalwr~~W~el~---p~WP~~~WDdWlR~ 301 (453)
....+...+.+-+++..|+.++++. +.....+|+.|+|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~ 183 (201)
T cd04195 140 ILKFARRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARM 183 (201)
T ss_pred HHHHhccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHH
Confidence 0000122344566788888887753 22222356666663
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.80 E-value=9.7e-08 Score=94.83 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=108.7
Q ss_pred eEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc---CCcceeeeccccccCCCCCCChhHH
Q 012912 116 AVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY---DKLTYMQHLDFEPVHADNPGELTAY 191 (453)
Q Consensus 116 PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~---~~~~~i~~~~~~~in~~~~~~~~~y 191 (453)
.|||++||++ +.|.+||+||.+..++ ...++|+|..||+.+.+.+.+..+ .....++.+.. +.|.|
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~-~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~-~~n~G-------- 70 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPP-ELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRL-KKREG-------- 70 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCch-hcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEc-CCCCC--------
Confidence 4899999999 9999999999985432 234689999999988877766431 11112222211 11322
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec--------CCCCCCCc------
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS--------WNDNGQKQ------ 257 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa--------wNdng~~~------ 257 (453)
.++-.+.|+.. ...+.+++|++|+++.|++++-+-..+ ..++....... +...+...
T Consensus 71 --~~~a~N~g~~~----A~gd~i~fLD~D~~~~~~wL~~ll~~l---~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~ 141 (299)
T cd02510 71 --LIRARIAGARA----ATGDVLVFLDSHCEVNVGWLEPLLARI---AENRKTVVCPIIDVIDADTFEYRGSSGDARGGF 141 (299)
T ss_pred --HHHHHHHHHHH----ccCCEEEEEeCCcccCccHHHHHHHHH---HhCCCeEEEeeeccccCCCeeEecCCCceeEEe
Confidence 12222335444 347999999999999999987554444 44554322211 11111000
Q ss_pred --------c-c-------CCCceeeecCCCcccccccchhhhhhh---CCCCCc---cchHHHHHHHHhhcCCceeecCC
Q 012912 258 --------F-V-------HDPYVLYRSDFFPGLGWMLTRTTWDEL---SPKWPK---AYWDDWLRLKENHKGRQFIRPEV 315 (453)
Q Consensus 258 --------~-v-------~d~~~lyRsdffpgwGWalwr~~W~el---~p~WP~---~~WDdWlR~~~~rkgr~cI~Pev 315 (453)
. . ..+...+++..++|-..|..|+.|+++ ++.... .+.|-++| ....|..+++=.-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R--~~~~G~~i~~~p~ 219 (299)
T cd02510 142 DWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFK--VWQCGGSIEIVPC 219 (299)
T ss_pred cccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHH--HHHcCCeEEEeec
Confidence 0 0 001122344556666778999999885 344322 24455565 4456777665334
Q ss_pred cceeccCC
Q 012912 316 CRTYNFGE 323 (453)
Q Consensus 316 SRt~niG~ 323 (453)
+++.|++.
T Consensus 220 a~v~H~~~ 227 (299)
T cd02510 220 SRVGHIFR 227 (299)
T ss_pred cEEEEecc
Confidence 66777664
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.79 E-value=2e-08 Score=87.47 Aligned_cols=102 Identities=25% Similarity=0.421 Sum_probs=71.7
Q ss_pred eEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC----CcceeeeccccccCCCCCCChhHH
Q 012912 116 AVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD----KLTYMQHLDFEPVHADNPGELTAY 191 (453)
Q Consensus 116 PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~----~~~~i~~~~~~~in~~~~~~~~~y 191 (453)
.|||++||++++|.+||+||+++. ...++|+|..||+.+++.++++++. .++.+... .|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~---~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~----~n~g-------- 65 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQT---DPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNP----ENLG-------- 65 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHS---GCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHC----CCSH--------
T ss_pred CEEEEeeCCHHHHHHHHHHHhhcc---CCCEEEEEecccccccccccccccccccccccccccc----cccc--------
Confidence 489999999999999999999962 4567999999999889999988872 34444322 1221
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhh
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL 238 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly 238 (453)
.+..++.|+..+ ..+.+++++||+++.|++++-+-..+...
T Consensus 66 --~~~~~n~~~~~a----~~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 66 --FSAARNRGIKHA----KGEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp --HHHHHHHHHHH------SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred --cccccccccccc----ceeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 233333355443 46799999999999999888777666553
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.78 E-value=1.5e-07 Score=87.58 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=68.5
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHh-h--cCCcceeeeccccccCCCCCCChhHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKAL-S--YDKLTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~-s--~~~~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
|||++||+++++.+||+||+++..+ .+.++|+|..||+.+.+.++++ . .... .+.+..... +... +
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~v~~~~~~~---~~~~---g--- 69 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYP-KEKFEVILVDDHSTDGTVQILEFAAAKPNF-QLKILNNSR---VSIS---G--- 69 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCC-CCceEEEEEcCCCCcChHHHHHHHHhCCCc-ceEEeeccC---cccc---h---
Confidence 6899999999999999999986543 3447999999999888888775 1 1111 122221110 0111 1
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHH
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
.+. |++..+...+.+.++++++|+.++|++++-+.+.+
T Consensus 70 ~~~----a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~ 107 (229)
T cd04192 70 KKN----ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFI 107 (229)
T ss_pred hHH----HHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHh
Confidence 122 33333333358999999999999999887655533
No 22
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.76 E-value=3.5e-07 Score=89.56 Aligned_cols=194 Identities=13% Similarity=0.147 Sum_probs=108.8
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHH
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYY 192 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~ 192 (453)
|.+.|||++||..+++.+||+||.++.......++|+|..||+.+.|.++++++.....++... .+ +.| +.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~-~~-~~G----~~~-- 72 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVS-EP-DNG----IYD-- 72 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEE-CC-CCC----HHH--
Confidence 4578999999999999999999986321123467999999999999999999874211122221 11 222 111
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCC-CCCCCccc---CCCc-eeee
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWN-DNGQKQFV---HDPY-VLYR 267 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawN-dng~~~~v---~d~~-~lyR 267 (453)
|++.-+.....+.+++|+.|..+.|+.++.+.++ ....+...+++++- +.+....+ ..+. .+++
T Consensus 73 --------A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~---~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
T PRK10063 73 --------AMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQL---KMQKDNAMIIGDALLDFGDGHKIKRSAKPGWYIYH 141 (248)
T ss_pred --------HHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHH---HhCCCCeEEEeeeEEEcCCCcEEEEccCChhHHhc
Confidence 4444444445799999998888889988776655 23444555555442 21111000 0111 1111
Q ss_pred cCCCcccccccchhhhhh--hCCCCCc-cchHHHHHHHHhhcCCcee-ecCCcceeccCCCCCChh
Q 012912 268 SDFFPGLGWMLTRTTWDE--LSPKWPK-AYWDDWLRLKENHKGRQFI-RPEVCRTYNFGEHGSSLG 329 (453)
Q Consensus 268 sdffpgwGWalwr~~W~e--l~p~WP~-~~WDdWlR~~~~rkgr~cI-~PevSRt~niG~~G~s~~ 329 (453)
.-.+.+-+-+..++.++. +++..+- .+||.|+|. .++|.... .|+.--.+..| |.|..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~fd~~~~~~~Dydl~lrl--~~~g~~~~~v~~~l~~y~~~--g~S~~ 203 (248)
T PRK10063 142 SLPASHQAIFFPVSGLKKWRYDLQYKVSSDYALAARL--YKAGYAFKKLNGLVSEFSMG--GVSTT 203 (248)
T ss_pred CCCCCCcEEEEEHHHHhcCCCCcccchHHhHHHHHHH--HHcCCcEEEcCceeEEEeCC--CCcCc
Confidence 000112233334455542 3444443 478999984 45664444 36554444433 55443
No 23
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.75 E-value=5.7e-08 Score=100.93 Aligned_cols=183 Identities=15% Similarity=0.208 Sum_probs=113.9
Q ss_pred CCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC----CcceeeeccccccCCCCC
Q 012912 110 VQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD----KLTYMQHLDFEPVHADNP 185 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~----~~~~i~~~~~~~in~~~~ 185 (453)
...|.+.|+|++||..+.+++|++||.++..+ .++|+|..||+.+++.++++++. .++.++. ++ |.|.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp---~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~---~~-n~Gk- 122 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLALRYP---NYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHL---AE-NQGK- 122 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHhCCCC---CeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEc---CC-CCCH-
Confidence 34577899999999999999999999986543 57999999999998888777652 2322221 11 3221
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCC-cccCC---
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQK-QFVHD--- 261 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~-~~v~d--- 261 (453)
+. |++..++..++|.++++++|..+.||++..+.+. ++.|+.+.+|+|-...... .....
T Consensus 123 ---------a~----aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~---~~~~~~v~~v~g~~~~~~~~~~~~~~~~ 186 (420)
T PRK11204 123 ---------AN----ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEH---FLHNPRVGAVTGNPRIRNRSTLLGRIQV 186 (420)
T ss_pred ---------HH----HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHH---HHhCCCeEEEECCceeccchhHHHHHHH
Confidence 12 3344444445899999999999999998866554 4578999999874321100 00000
Q ss_pred ------------Cceee-ecCCCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhhcCCceee-cCCcceec
Q 012912 262 ------------PYVLY-RSDFFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENHKGRQFIR-PEVCRTYN 320 (453)
Q Consensus 262 ------------~~~ly-RsdffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~rkgr~cI~-PevSRt~n 320 (453)
....+ +.-..+|-+-+..|+.++++. .|.. .+.|..+| ..++|..+.+ |+ ..+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vg-g~~~~~~~ED~~l~~r--l~~~G~~i~~~p~-~~~~~ 259 (420)
T PRK11204 187 GEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVG-YWSTDMITEDIDISWK--LQLRGWDIRYEPR-ALCWI 259 (420)
T ss_pred HHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhC-CCCCCcccchHHHHHH--HHHcCCeEEeccc-cEEEe
Confidence 00000 011234666788888888865 3332 23333344 3456776665 54 44444
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.73 E-value=1.7e-07 Score=89.82 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=83.2
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC--cceeeeccccccCCCCCCChhH
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK--LTYMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~--~~~i~~~~~~~in~~~~~~~~~ 190 (453)
|.+.|+|.+||..+.+.++|+||+++..+ ...++|+|..|++.+++.++++.+.. ...+..... ..+.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~-~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~-~~~~G------- 71 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYP-RSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPP-SQPRT------- 71 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCC-cccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecC-CCCCc-------
Confidence 46789999999999999999999986543 34578999999999999999887731 112222211 00111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
.+. |++..+....++.++++++|+.+.|+++.-+-..+. +.++.+.++++.
T Consensus 72 ---~~~----a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~--~~~~~v~~~~~~ 122 (241)
T cd06427 72 ---KPK----ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA--RLDDKLACVQAP 122 (241)
T ss_pred ---hHH----HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH--hcCCCEEEEeCc
Confidence 111 444445444689999999999999999884433332 345888888765
No 25
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.73 E-value=2.8e-07 Score=86.03 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=77.5
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC-cceeeeccccccCCCCCCChhHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK-LTYMQHLDFEPVHADNPGELTAYYKIA 195 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~-~~~i~~~~~~~in~~~~~~~~~y~~Ia 195 (453)
|||++||++++|.++|++|.++.. ...++|+|..||+.+++.++++++.. ...++.... +.|.|. +
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~--~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~-~~n~G~----------~ 67 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVR-PGKRGL----------G 67 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEec-CCCCCh----------H
Confidence 689999999999999999998542 24579999999998888888877621 111111111 113222 1
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC
Q 012912 196 RHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND 252 (453)
Q Consensus 196 rHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd 252 (453)
. |++.-+.....+.++++++|+.+.|+++.-+.+.+ .+++..+.+.+.+..
T Consensus 68 ~----a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~--~~~~~~~v~g~~~~~ 118 (224)
T cd06442 68 S----AYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQ--LEGGADLVIGSRYVE 118 (224)
T ss_pred H----HHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH--hcCCCCEEEEeeeec
Confidence 2 33333333346899999999999999998766653 345556655444433
No 26
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=98.69 E-value=3.5e-07 Score=86.73 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=110.2
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-----CcceeeeccccccCCCCCCC
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-----KLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-----~~~~i~~~~~~~in~~~~~~ 187 (453)
|.+.|||++||..+.+.++|+||+++..+ .+..+|+|..| +.++|.++++.+. .-..+++..... +.|
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~-~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~-~~G---- 73 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYP-KDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRAD-RTG---- 73 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCC-ccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCC-CCC----
Confidence 35789999999999999999999986543 34567878766 6666666655431 001233322111 211
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC--CCCCcccC---C-
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND--NGQKQFVH---D- 261 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd--ng~~~~v~---d- 261 (453)
+++ . |++..++..+++.+++++.|+.+.|++++-+... + .++.+.+|++.-. +....... .
T Consensus 74 ~k~-----~----a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~---~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 140 (232)
T cd06437 74 YKA-----G----ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY---F-ADPKLGFVQTRWGHINANYSLLTRVQAM 140 (232)
T ss_pred Cch-----H----HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh---h-cCCCeEEEecceeeEcCCCchhhHhhhh
Confidence 111 1 3333333335899999999999999998864433 2 4778988887421 11111100 0
Q ss_pred Cce---------eeecC---CCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhhcCCceeecCCcceeccCCCC
Q 012912 262 PYV---------LYRSD---FFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHG 325 (453)
Q Consensus 262 ~~~---------lyRsd---ffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G 325 (453)
+.. .++.. .+.|-+=+..|+.|+++. .|+. .++|.|+|. ..+|..+.+..-..+.+-. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vg-g~~~~~~~ED~~l~~rl--~~~G~~~~~~~~~~v~~~~--~ 215 (232)
T cd06437 141 SLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAG-GWNHDTLTEDLDLSYRA--QLKGWKFVYLDDVVVPAEL--P 215 (232)
T ss_pred hHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhC-CCCCCcchhhHHHHHHH--HHCCCeEEEeccceeeeeC--C
Confidence 000 00000 122333355678888864 3433 245667774 4467555553333454433 4
Q ss_pred CChhHhHHhh
Q 012912 326 SSLGQFFQQY 335 (453)
Q Consensus 326 ~s~~~~f~~y 335 (453)
.+...+..+.
T Consensus 216 ~~~~~~~~q~ 225 (232)
T cd06437 216 ASMSAYRSQQ 225 (232)
T ss_pred cCHHHHHHHH
Confidence 5555655554
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.69 E-value=1.9e-07 Score=87.98 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=77.6
Q ss_pred eeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHH
Q 012912 115 AAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 115 ~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
+.|||++||++ +.+.+||++|.++. .++|+|..||+.+++.+.+........+.... .+ +.|.
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-----~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~-~~-~~g~--------- 65 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-----PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT-VP-HPGK--------- 65 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-----CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe-cC-CCCh---------
Confidence 57999999999 99999999999953 36899999999988877653221111122211 11 2221
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCC
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWN 251 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawN 251 (453)
+. |++..+...+++.++++++|+.+.|++++ .++..+. ++.+.+|++..
T Consensus 66 -~~----a~n~g~~~a~~d~v~~lD~D~~~~~~~l~---~l~~~~~-~~~v~~v~~~~ 114 (235)
T cd06434 66 -RR----ALAEGIRHVTTDIVVLLDSDTVWPPNALP---EMLKPFE-DPKVGGVGTNQ 114 (235)
T ss_pred -HH----HHHHHHHHhCCCEEEEECCCceeChhHHH---HHHHhcc-CCCEeEEcCce
Confidence 11 33333333358999999999999999866 5556666 88999998754
No 28
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.68 E-value=2.9e-07 Score=77.88 Aligned_cols=128 Identities=21% Similarity=0.265 Sum_probs=84.9
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCc--ceeeeccccccCCCCCCChhHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKL--TYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~--~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
|+|+++|+++++..+|+++.+... ...+++|..|++..++.+.+.+.... ...... ...+.+ .
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g----------~ 65 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTY---PNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVI--NEENQG----------L 65 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCc---cceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEE--ecCCCC----------h
Confidence 589999999999999999999642 34689999999988888777665321 111111 111221 1
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeecCCCccc
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRSDFFPGL 274 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRsdffpgw 274 (453)
+...+.|+... +.+.++++++|..+.|+++..+ +..+..++...++.+. .
T Consensus 66 ~~~~~~~~~~~----~~d~v~~~d~D~~~~~~~~~~~---~~~~~~~~~~~~v~~~-----------------------~ 115 (156)
T cd00761 66 AAARNAGLKAA----RGEYILFLDADDLLLPDWLERL---VAELLADPEADAVGGP-----------------------G 115 (156)
T ss_pred HHHHHHHHHHh----cCCEEEEECCCCccCccHHHHH---HHHHhcCCCceEEecc-----------------------c
Confidence 22222344443 4799999999999999999986 3344455555555554 5
Q ss_pred ccccchhhhhhhCCC
Q 012912 275 GWMLTRTTWDELSPK 289 (453)
Q Consensus 275 GWalwr~~W~el~p~ 289 (453)
+++..++.|+++...
T Consensus 116 ~~~~~~~~~~~~~~~ 130 (156)
T cd00761 116 NLLFRRELLEEIGGF 130 (156)
T ss_pred hheeeHHHHHHhCCc
Confidence 666777777776543
No 29
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.66 E-value=4.8e-07 Score=85.04 Aligned_cols=184 Identities=10% Similarity=0.104 Sum_probs=101.7
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC------CcceeeeccccccCCCCCCChhH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD------KLTYMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~------~~~~i~~~~~~~in~~~~~~~~~ 190 (453)
|+|++||+.++|.+||+||.++.. ...++|+|..||+.+.|.++++.+. .+..+.+.. +.+...++
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~--~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~G~-- 72 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDF--EGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSH----NSPSPKGV-- 72 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCC--CCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecc----cCCCCccH--
Confidence 689999999999999999998543 2357999999999988888888762 111111110 11111111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC--C-CCCcc------cCC
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND--N-GQKQF------VHD 261 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd--n-g~~~~------v~d 261 (453)
+. |.+..+.....+.+++|++|..+.|+.+.-+- ..+.+++..+..++... . ..... ...
T Consensus 73 ----~~----a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
T cd06913 73 ----GY----AKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQY---EAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTR 141 (219)
T ss_pred ----HH----HHHHHHHhcCCCEEEEECCCccCChhHHHHHH---HHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCH
Confidence 11 33333333457999999999999999887533 33333343332333221 1 11100 000
Q ss_pred Ccee--eec---CCCcccccccchhhhhhhC---CCCC--ccchHHHHHHHHhhcCCce-eecCCcceecc
Q 012912 262 PYVL--YRS---DFFPGLGWMLTRTTWDELS---PKWP--KAYWDDWLRLKENHKGRQF-IRPEVCRTYNF 321 (453)
Q Consensus 262 ~~~l--yRs---dffpgwGWalwr~~W~el~---p~WP--~~~WDdWlR~~~~rkgr~c-I~PevSRt~ni 321 (453)
.... ..+ ...+..+|+..|+.|+++. +... ..+||.|+|. ..+|..+ ..|+.--.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~--~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 142 EQLLTQVYTSHGPTVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEH--LRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred HHHHHHHHhhcCCccccccceeehhHHhhcCCccchhccchhHHHHHHHH--HHcCCceEEEcceeeeeee
Confidence 0000 000 0122345788999998764 2221 1467778874 3455443 34664434433
No 30
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=98.65 E-value=4.4e-07 Score=102.99 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=119.4
Q ss_pred CCCceeeEEEEecCchH-HHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCCh
Q 012912 110 VQVPVAAVVIMACNRAN-YLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~-~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~ 188 (453)
...|.+.|+|.|||-+. .+++++.++++.+.| .++++|+|.+||+++++++++++++ +.++...+ |.+ .-
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP-~~k~EViVVDDgS~D~t~~la~~~~-v~yI~R~~----n~~---gK 327 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWP-KDKLNIWILDDGGREEFRQFAQEVG-VKYIARPT----HEH---AK 327 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCC-CCceEEEEEeCCCChHHHHHHHHCC-cEEEEeCC----CCc---ch
Confidence 34578999999999994 568899999987765 5678999999999999999998873 55554321 211 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC----CCCCC-C------c
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW----NDNGQ-K------Q 257 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw----Ndng~-~------~ 257 (453)
|. +++..+...+.|.+++++-|.++.|||++ .+...+..|++|..|.+- |.... . .
T Consensus 328 ------AG----nLN~aL~~a~GEyIavlDAD~ip~pdfL~---~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~ 394 (852)
T PRK11498 328 ------AG----NINNALKYAKGEFVAIFDCDHVPTRSFLQ---MTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRK 394 (852)
T ss_pred ------HH----HHHHHHHhCCCCEEEEECCCCCCChHHHH---HHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhh
Confidence 11 33333333458999999999999999987 555566679999999863 21110 0 0
Q ss_pred ccCCCc----------eeeecCCCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhhcCCceee
Q 012912 258 FVHDPY----------VLYRSDFFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENHKGRQFIR 312 (453)
Q Consensus 258 ~v~d~~----------~lyRsdffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~rkgr~cI~ 312 (453)
...... ..+...++.|=+.+..|+.++++. +|+. .++|-++| ..++|..+++
T Consensus 395 ~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVG-Gfd~~titED~dlslR--L~~~Gyrv~y 460 (852)
T PRK11498 395 TPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIG-GIAVETVTEDAHTSLR--LHRRGYTSAY 460 (852)
T ss_pred cccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhc-CCCCCccCccHHHHHH--HHHcCCEEEE
Confidence 000111 112234566767788899999875 4543 36777777 4457777665
No 31
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.61 E-value=2.5e-07 Score=97.79 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~~ 186 (453)
..|.+.|+|++||..+.+.+||+||.++..+ .++.+|+|..||+.++|.++++++ ..+. +.+. +.+.|
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp-~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~-v~~~---~~~~G--- 118 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTYP-IELIDIILANNQSTDDSFQVFCRAQNEFPGLS-LRYM---NSDQG--- 118 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCCC-CCCeEEEEEECCCChhHHHHHHHHHHhCCCeE-EEEe---CCCCC---
Confidence 3577999999999999999999999997654 455689999999999998877654 2221 2111 11211
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCC
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWN 251 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawN 251 (453)
.++ |++..++....+.+++++.|+.+.||+++-+ .+.+.+|+.+.+++|.-
T Consensus 119 -------ka~----AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l---~~~f~~~~~v~~v~g~~ 169 (439)
T TIGR03111 119 -------KAK----ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNM---VTRFENNPDIHAMTGVI 169 (439)
T ss_pred -------HHH----HHHHHHHHccCCEEEEECCCCCcChHHHHHH---HHHHHhCCCeEEEEeEE
Confidence 122 4444444445789999999999999998754 44456789998888754
No 32
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.57 E-value=1.9e-06 Score=80.20 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=99.6
Q ss_pred eeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHH
Q 012912 115 AAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 115 ~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
+.|+|++||+++++.++|+||+++.. ..++|+|..||+.+++.+++++.. +..+. .+.+.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~---~~~evivvdd~s~d~~~~~~~~~~-~~~~~------~~~g~---------- 60 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNP---LPLEIIVVDGGSTDGTVAIARSAG-VVVIS------SPKGR---------- 60 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccC---CCcEEEEEeCCCCccHHHHHhcCC-eEEEe------CCcCH----------
Confidence 36899999999999999999998542 457899999999888888887632 21111 12111
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCccc-----C-CCceeeec
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFV-----H-DPYVLYRS 268 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v-----~-d~~~lyRs 268 (453)
+.-.+.|+.. ...+.++++++|+.+.|++++-+ +.....+..+.+............. . .....+..
T Consensus 61 ~~a~n~g~~~----a~~~~i~~~D~D~~~~~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (221)
T cd02522 61 ARQMNAGAAA----ARGDWLLFLHADTRLPPDWDAAI---IETLRADGAVAGAFRLRFDDPGPRLRLLELGANLRSRLFG 133 (221)
T ss_pred HHHHHHHHHh----ccCCEEEEEcCCCCCChhHHHHH---HHHhhcCCcEEEEEEeeecCCccchhhhhhcccceecccC
Confidence 1111224433 34789999999999999998876 3334444444333322221111000 0 00000111
Q ss_pred CCCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhhcCCceeecCC
Q 012912 269 DFFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENHKGRQFIRPEV 315 (453)
Q Consensus 269 dffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~rkgr~cI~Pev 315 (453)
..+.+-|.+..|+.|+++. .|+. .++|-++| ...+|.....|..
T Consensus 134 ~~~~~~~~~~r~~~~~~~G-~fd~~~~~ED~d~~~r--~~~~G~~~~~~~~ 181 (221)
T cd02522 134 LPYGDQGLFIRRELFEELG-GFPELPLMEDVELVRR--LRRRGRPALLPSP 181 (221)
T ss_pred CCcCCceEEEEHHHHHHhC-CCCccccccHHHHHHH--HHhCCCEEEcCce
Confidence 1233457788899998765 2322 24555555 5556666555543
No 33
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.56 E-value=6.1e-07 Score=91.47 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=80.0
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-CcceeeeccccccCCCCCCChh
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KLTYMQHLDFEPVHADNPGELT 189 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~ 189 (453)
++|.+.|||++||+++++.+||+||+++.. ..++|+|..||+.+++.++++.+. ....++... .+ |.|.
T Consensus 4 ~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~---~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~-~~-n~G~----- 73 (328)
T PRK10073 4 STPKLSIIIPLYNAGKDFRAFMESLIAQTW---TALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLH-QA-NAGV----- 73 (328)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHhCCC---CCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE-CC-CCCh-----
Confidence 468899999999999999999999998543 467999999999998888888762 212232221 11 3322
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEE
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMA 246 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ 246 (453)
+...+.|+.. ...+.++++++|..+.|++++-+.+.+. +.+..+..
T Consensus 74 -----~~arN~gl~~----a~g~yi~flD~DD~~~p~~l~~l~~~~~--~~~~dvv~ 119 (328)
T PRK10073 74 -----SVARNTGLAV----ATGKYVAFPDADDVVYPTMYETLMTMAL--EDDLDVAQ 119 (328)
T ss_pred -----HHHHHHHHHh----CCCCEEEEECCCCccChhHHHHHHHHHH--hCCCCEEE
Confidence 2222335543 3579999999999999999886655443 23445543
No 34
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.52 E-value=1.7e-06 Score=81.57 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=101.6
Q ss_pred EEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh-cCCcceeeeccccccCCCCCCChhHHHHH
Q 012912 117 VVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS-YDKLTYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 117 IlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s-~~~~~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
++|++||+. +.+.+||+||.++ . .+|+|..||+.+++....+. ...+..+.. +.|.|.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q-~-----~~iivvDn~s~~~~~~~~~~~~~~i~~i~~----~~n~G~---------- 60 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ-V-----DKVVVVDNSSGNDIELRLRLNSEKIELIHL----GENLGI---------- 60 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc-C-----CEEEEEeCCCCccHHHHhhccCCcEEEEEC----CCceeh----------
Confidence 478999999 9999999999984 2 47888888887665554443 122322321 223332
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCC--CCCc--ccC----------
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDN--GQKQ--FVH---------- 260 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdn--g~~~--~v~---------- 260 (453)
+.-++.|+...=.. +++.++++++|..+.|++++-+......+..++.+.+++.--.. +... ...
T Consensus 61 ~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (237)
T cd02526 61 AKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQK 139 (237)
T ss_pred HHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecc
Confidence 22223355443221 46999999999999999999875333445677777766543111 1100 000
Q ss_pred -CCceeeecCCCcccccccchhhhhhhCCCCCcc------chHHHHHHHHhhcCCce-eecCCcce
Q 012912 261 -DPYVLYRSDFFPGLGWMLTRTTWDELSPKWPKA------YWDDWLRLKENHKGRQF-IRPEVCRT 318 (453)
Q Consensus 261 -d~~~lyRsdffpgwGWalwr~~W~el~p~WP~~------~WDdWlR~~~~rkgr~c-I~PevSRt 318 (453)
........++..+-|.+..|+.|+++. .|... +.|.++| ..++|..+ ..|.+-..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~rr~~~~~~g-gfd~~~~~~~eD~d~~~r--~~~~G~~~~~~~~~~v~ 202 (237)
T cd02526 140 EGEEGLKEVDFLITSGSLISLEALEKVG-GFDEDLFIDYVDTEWCLR--ARSKGYKIYVVPDAVLK 202 (237)
T ss_pred cccCCceEeeeeeccceEEcHHHHHHhC-CCCHHHcCccchHHHHHH--HHHcCCcEEEEcCeEEE
Confidence 001111122333567778888898865 23322 2333444 45667544 44665433
No 35
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.47 E-value=1.3e-06 Score=79.01 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=78.9
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-CcceeeeccccccCCCCCCChhHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KLTYMQHLDFEPVHADNPGELTAYYKIA 195 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~~y~~Ia 195 (453)
|+|++||+++++.+||++|.++... ....+|+|..||+.+++.++++++. ....++.... +.|.|. +
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~-~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~-~~n~G~----------~ 68 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEE-GYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRL-SRNFGK----------G 68 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhcc-CCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEc-cCCCCc----------c
Confidence 6899999999999999999996431 3467999999999988888888763 1212222211 223332 2
Q ss_pred HHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCC
Q 012912 196 RHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDN 253 (453)
Q Consensus 196 rHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdn 253 (453)
...+.|+... ..+.++++++|..++|++++-+-..+ ...+..+.+......+
T Consensus 69 ~a~n~g~~~a----~gd~i~~lD~D~~~~~~~l~~l~~~~--~~~~~~~v~g~~~~~~ 120 (185)
T cd04179 69 AAVRAGFKAA----RGDIVVTMDADLQHPPEDIPKLLEKL--LEGGADVVIGSRFVRG 120 (185)
T ss_pred HHHHHHHHHh----cCCEEEEEeCCCCCCHHHHHHHHHHH--hccCCcEEEEEeecCC
Confidence 2223344443 35899999999999999988665542 3455555555544443
No 36
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.43 E-value=1.6e-06 Score=91.63 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=84.0
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC----CcceeeeccccccCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD----KLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~----~~~~i~~~~~~~in~~~~~ 186 (453)
..|.+.|+|++||.++.+.+||+++++...+ .++|+|..||++++|.++++++. .++.+. . +. |.|.
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~yp---~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~-~--~~-n~Gk-- 143 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTYT---NIEVIAINDGSSDDTAQVLDALLAEDPRLRVIH-L--AH-NQGK-- 143 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCC---CeEEEEEECCCCccHHHHHHHHHHhCCCEEEEE-e--CC-CCCH--
Confidence 3577999999999999999999999986543 57999999999988887776652 222221 1 11 2221
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
+. |++.-....++|.++++|.|..+.||++..+.+. +.+|+++.+|+|-
T Consensus 144 --------a~----AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~---~~~~~~~g~v~g~ 192 (444)
T PRK14583 144 --------AI----ALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAP---LIANPRTGAVTGN 192 (444)
T ss_pred --------HH----HHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHH---HHhCCCeEEEEcc
Confidence 12 3333333335899999999999999999877654 3468899999874
No 37
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.39 E-value=3e-07 Score=86.33 Aligned_cols=195 Identities=25% Similarity=0.332 Sum_probs=98.4
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHh----hcCC--cceeeeccccccCCCCCC
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKAL----SYDK--LTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~----s~~~--~~~i~~~~~~~in~~~~~ 186 (453)
|.+.|+|.+||+++.+.++|+||+++.. ..++|+|..|++.+++.+.++ .+.. +..+... .+.
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~----~~~---- 69 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDY---PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP----RNP---- 69 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHH---HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE--------H----
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCC---CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC----CCC----
Confidence 4478999999999999999999998643 458999999998776554443 3432 1222211 011
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC--CCCCcc--cCC-
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND--NGQKQF--VHD- 261 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd--ng~~~~--v~d- 261 (453)
+-...+++.+.|+..+ .++.+++++||..+.|+++.-+.+.+ .++.+.+|++... ++.... ..+
T Consensus 70 ---g~~~k~~a~n~~~~~~----~~d~i~~lD~D~~~~p~~l~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~ 138 (228)
T PF13641_consen 70 ---GPGGKARALNEALAAA----RGDYILFLDDDTVLDPDWLERLLAAF----ADPGVGAVGGPVFPDNDRNWLTRLQDL 138 (228)
T ss_dssp ---HHHHHHHHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHH----HBSS--EEEEEEEETTCCCEEEE-TT-
T ss_pred ---CcchHHHHHHHHHHhc----CCCEEEEECCCcEECHHHHHHHHHHH----HhCCCCeEeeeEeecCCCCHHHHHHHH
Confidence 1112344445555553 47999999999999999988666665 5677777764432 211100 000
Q ss_pred -----------CceeeecCCCcccccccchhhhhhhC---CCCCccchHHHHHHHHhhcCCceee-cCCcceeccCCCCC
Q 012912 262 -----------PYVLYRSDFFPGLGWMLTRTTWDELS---PKWPKAYWDDWLRLKENHKGRQFIR-PEVCRTYNFGEHGS 326 (453)
Q Consensus 262 -----------~~~lyRsdffpgwGWalwr~~W~el~---p~WP~~~WDdWlR~~~~rkgr~cI~-PevSRt~niG~~G~ 326 (453)
...-....++.|.|.+..|+.++++. +.....+++..+| ...+|..+.+ |+. .+.+- ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r--~~~~G~~~~~~~~~-~v~~~--~~~ 213 (228)
T PF13641_consen 139 FFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLR--LRAAGWRIVYAPDA-LVYHE--EPS 213 (228)
T ss_dssp -S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHH--HHHTT--EEEEEEE-EEEE----SS
T ss_pred HHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHH--HHHCCCcEEEECCc-EEEEe--CCC
Confidence 00111223445778888999998864 3111123333333 4457776665 533 34443 234
Q ss_pred ChhHhHHh
Q 012912 327 SLGQFFQQ 334 (453)
Q Consensus 327 s~~~~f~~ 334 (453)
+...++.+
T Consensus 214 ~~~~~~~q 221 (228)
T PF13641_consen 214 SLKAFFKQ 221 (228)
T ss_dssp STHHHHHH
T ss_pred CHHHHHHH
Confidence 55555554
No 38
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=98.38 E-value=9.1e-06 Score=91.19 Aligned_cols=178 Identities=16% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCCceeeEEEEecCchHH-HHHHHHHHHhccCCCCCCccEEEeeCCCChh------------------HHHHHhhcCCcc
Q 012912 110 VQVPVAAVVIMACNRANY-LERTINSVFKYQGSVASKYPLFVSQDGSNPQ------------------VKSKALSYDKLT 170 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~-l~R~LesL~k~~~~~~~~~~LiVsqDG~~~e------------------t~~vi~s~~~~~ 170 (453)
...|.+.|+|++||.+.. ++++++++++...| .++++|+|..||+.+. +++.++.+ ++.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP-~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~-~v~ 205 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYP-ADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL-GVN 205 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCC-ccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc-CcE
Confidence 345789999999999854 57899999987765 5678999999997443 23333333 344
Q ss_pred eeeeccccccCCCCCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 171 YMQHLDFEPVHADNPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 171 ~i~~~~~~~in~~~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
++... .|.+. + .+ +++...+..+.|.+++++.|..+.|||+. .+...+..|+++.+|.+-
T Consensus 206 yi~r~----~n~~~-K--Ag----------nLN~al~~a~gd~Il~lDAD~v~~pd~L~---~~v~~f~~dp~v~~Vqtp 265 (713)
T TIGR03030 206 YITRP----RNVHA-K--AG----------NINNALKHTDGELILIFDADHVPTRDFLQ---RTVGWFVEDPKLFLVQTP 265 (713)
T ss_pred EEECC----CCCCC-C--hH----------HHHHHHHhcCCCEEEEECCCCCcChhHHH---HHHHHHHhCCCEEEEeCC
Confidence 44322 12211 0 11 33344444468999999999999999986 556667779999988652
Q ss_pred ----CCCCC-Ccc-----cC-----------CCceeeecCCCcccccccchhhhhhhCCCCC----ccchHHHHHHHHhh
Q 012912 251 ----NDNGQ-KQF-----VH-----------DPYVLYRSDFFPGLGWMLTRTTWDELSPKWP----KAYWDDWLRLKENH 305 (453)
Q Consensus 251 ----Ndng~-~~~-----v~-----------d~~~lyRsdffpgwGWalwr~~W~el~p~WP----~~~WDdWlR~~~~r 305 (453)
|.+.. .+. .. .....+...++.|-+.+..|+.++++. .|+ ..+.+-++| ..+
T Consensus 266 ~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iG-Gf~~~~vtED~~l~~r--L~~ 342 (713)
T TIGR03030 266 HFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIG-GIAGETVTEDAETALK--LHR 342 (713)
T ss_pred eeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcC-CCCCCCcCcHHHHHHH--HHH
Confidence 21110 000 00 000111223566777888999998865 233 235555565 456
Q ss_pred cCCceee
Q 012912 306 KGRQFIR 312 (453)
Q Consensus 306 kgr~cI~ 312 (453)
+|..+++
T Consensus 343 ~G~~~~y 349 (713)
T TIGR03030 343 RGWNSAY 349 (713)
T ss_pred cCCeEEE
Confidence 7877665
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.38 E-value=2.5e-06 Score=77.60 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=74.5
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC----CcceeeeccccccCCCCCCChhHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD----KLTYMQHLDFEPVHADNPGELTAYY 192 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~----~~~~i~~~~~~~in~~~~~~~~~y~ 192 (453)
|+|++||+++.+.++|++|.++.......++|+|..||+.+++.++++++. .+..+.+ + .|.|.
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~---~-~n~G~-------- 68 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRL---S-RNFGQ-------- 68 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEe---c-CCCCc--------
Confidence 689999999999999999987532223457999999999988888887762 2222222 1 13332
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEE
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIM 245 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~ 245 (453)
++ |++..+.....+.++++++|..+.|++++-+-+. ++.+..+.
T Consensus 69 --~~----a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~---~~~~~~~v 112 (181)
T cd04187 69 --QA----ALLAGLDHARGDAVITMDADLQDPPELIPEMLAK---WEEGYDVV 112 (181)
T ss_pred --HH----HHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH---HhCCCcEE
Confidence 12 3333444345799999999999999988866554 45555553
No 40
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=98.36 E-value=2.3e-06 Score=78.48 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=73.2
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
|+|++||.++.+.+||++|.++..+ ...++|+|..||+.++|.++++.+... .+.+. .+.+.+ + +.
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p-~~~~eiivvdd~s~D~t~~~~~~~~~~-~~~~~--~~~~~g-----k-----~~ 66 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYP-RELYRIFVVADNCTDDTAQVARAAGAT-VLERH--DPERRG-----K-----GY 66 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCC-CcccEEEEEeCCCCchHHHHHHHcCCe-EEEeC--CCCCCC-----H-----HH
Confidence 6899999999999999999986543 356789999999999999998877421 11111 111211 1 12
Q ss_pred HHHHHHHHHhh-hcCCcEEEEEccCceeChhHHHHHHHHH
Q 012912 197 HYKWALDNLFY-KHNFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 197 HYk~aLs~vF~-~~~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
-.++|+..+-. ..+++.+++++.|+.+.|+++.-+...+
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~ 106 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARF 106 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHH
Confidence 12335544421 1137899999999999999999887765
No 41
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=98.36 E-value=3e-06 Score=78.75 Aligned_cols=114 Identities=12% Similarity=0.238 Sum_probs=76.0
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHh-hc--CCcceeeeccccccCCCCCCChhHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKAL-SY--DKLTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~-s~--~~~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
|||++||..+++.+||+||.+.. ..++|+|..||+.+.|.++++ .. .++..+++. ....+.|.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~----~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~-~~~~~~Gk--------- 66 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK----PNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRH-LPNARTGK--------- 66 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC----CCeEEEEEECCCCcCHHHHHhheecCCcEEEEecc-CCcCCCCH---------
Confidence 68999999999999999999854 357899999999999988887 22 233333221 00111111
Q ss_pred HHHHHHHHHHHHhhh-------cCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec
Q 012912 194 IARHYKWALDNLFYK-------HNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS 249 (453)
Q Consensus 194 IarHYk~aLs~vF~~-------~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa 249 (453)
+.-.++|+..+-.. ...+.+++++.|..+.|++++.+...+ .++.+.++.+
T Consensus 67 -~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~----~~~~v~~v~~ 124 (191)
T cd06436 67 -GDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF----SDPRVAGTQS 124 (191)
T ss_pred -HHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh----cCCceEEEee
Confidence 12223355544321 013689999999999999999765543 3678777654
No 42
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=98.36 E-value=4.2e-06 Score=86.50 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=115.5
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCCCC
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~~~ 187 (453)
.|.+.|+|.+||..+.+.+||+||.++..+ .++|+|..|++++.+.++++.+ ... .++.+. .+.+.|..++
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp---~~EIivvdd~s~D~t~~iv~~~~~~~p~~-~i~~v~-~~~~~G~~~K 114 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYP---GFQMLFGVQDPDDPALAVVRRLRADFPDA-DIDLVI-DARRHGPNRK 114 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCC---CeEEEEEeCCCCCcHHHHHHHHHHhCCCC-ceEEEE-CCCCCCCChH
Confidence 577899999999999999999999997654 3899998898888777776654 221 122121 1112232221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC-CCCCcc--------
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND-NGQKQF-------- 258 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd-ng~~~~-------- 258 (453)
. +++.+.....++|.++++++|+.++||+++-+.+. + .|+.+.+|++.-. ......
T Consensus 115 ~-----------~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~---~-~~~~v~~V~~~~~~~~~~~~~~~l~~~~ 179 (373)
T TIGR03472 115 V-----------SNLINMLPHARHDILVIADSDISVGPDYLRQVVAP---L-ADPDVGLVTCLYRGRPVPGFWSRLGAMG 179 (373)
T ss_pred H-----------HHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHH---h-cCCCcceEeccccCCCCCCHHHHHHHHH
Confidence 1 13333444446899999999999999999855544 3 3788888887432 111110
Q ss_pred cCC---Cc-----eeeecCCCcccccccchhhhhhhCCCCC---ccchHHH-HHHHHhhcCCceeecCCcceeccCCCCC
Q 012912 259 VHD---PY-----VLYRSDFFPGLGWMLTRTTWDELSPKWP---KAYWDDW-LRLKENHKGRQFIRPEVCRTYNFGEHGS 326 (453)
Q Consensus 259 v~d---~~-----~lyRsdffpgwGWalwr~~W~el~p~WP---~~~WDdW-lR~~~~rkgr~cI~PevSRt~niG~~G~ 326 (453)
... |. .+-...+..|=..+..|+.++++. .++ ....||+ +-.....+|............+.+ ..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iG-Gf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~--~~ 256 (373)
T TIGR03472 180 INHNFLPSVMVARALGRARFCFGATMALRRATLEAIG-GLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVH--ET 256 (373)
T ss_pred hhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcC-ChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCC--cc
Confidence 000 00 000112222333567788888865 332 2223443 333344566665554333332322 35
Q ss_pred ChhHhHHh
Q 012912 327 SLGQFFQQ 334 (453)
Q Consensus 327 s~~~~f~~ 334 (453)
+...++++
T Consensus 257 s~~~~~~q 264 (373)
T TIGR03472 257 SFATLLAH 264 (373)
T ss_pred CHHHHHHH
Confidence 66677765
No 43
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.32 E-value=7e-06 Score=80.62 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=101.3
Q ss_pred EecCc-hHHHHHHHHHHHhccCCCCCCccEEEeeCCCCh--hHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 120 MACNR-ANYLERTINSVFKYQGSVASKYPLFVSQDGSNP--QVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 120 ~a~NR-P~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~--et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
+|||| .+.|++||+||+++ . .+|+|..||+.+ .+.++.+.+.++..++. +.|.| +|.
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q-~-----~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~----~~N~G----------~a~ 60 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQ-V-----DRIIAVDNSPHSDQPLKNARLRGQKIALIHL----GDNQG----------IAG 60 (281)
T ss_pred CccCccHHHHHHHHHHHHhc-C-----CEEEEEECcCCCcHhHHHHhccCCCeEEEEC----CCCcc----------hHH
Confidence 48999 69999999999984 2 379999999753 45555555544444431 22444 333
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCC-cEEEEecCCCCCCC-cc---------------c
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDK-SIMAVSSWNDNGQK-QF---------------V 259 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~-sI~~ISawNdng~~-~~---------------v 259 (453)
-++.|+..+.+. +++.+++++||..+.|++++-+.+. ++.++ .+.++++--.+... .. .
T Consensus 61 a~N~Gi~~a~~~-~~d~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (281)
T TIGR01556 61 AQNQGLDASFRR-GVQGVLLLDQDSRPGNAFLAAQWKL---LSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISL 136 (281)
T ss_pred HHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHH---HHhcCCceEEECCeEEcCCCcccCCceeecccceeeecc
Confidence 445577777653 5899999999999999988755554 44444 66666653211100 00 0
Q ss_pred CCCceeeecCCCcccccccchhhhhhhCCCCCcc---chHH---HHHHHHhhcCCcee-ecCCcceec
Q 012912 260 HDPYVLYRSDFFPGLGWMLTRTTWDELSPKWPKA---YWDD---WLRLKENHKGRQFI-RPEVCRTYN 320 (453)
Q Consensus 260 ~d~~~lyRsdffpgwGWalwr~~W~el~p~WP~~---~WDd---WlR~~~~rkgr~cI-~PevSRt~n 320 (453)
..+.....+++..+-|.+..|+.|+++.. ..+. +++| ++| ...+|..++ .|++- ..|
T Consensus 137 ~~~~~~~~~~~~~~sg~li~~~~~~~iG~-fde~~fi~~~D~e~~~R--~~~~G~~i~~~~~~~-~~H 200 (281)
T TIGR01556 137 DGLTTPQKTSFLISSGCLITREVYQRLGM-MDEELFIDHVDTEWSLR--AQNYGIPLYIDPDIV-LEH 200 (281)
T ss_pred cccCCceeccEEEcCcceeeHHHHHHhCC-ccHhhcccchHHHHHHH--HHHCCCEEEEeCCEE-EEE
Confidence 01111122334445678899999988642 1111 2332 344 445565554 56654 444
No 44
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.32 E-value=5.2e-06 Score=86.22 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=78.2
Q ss_pred CCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-Cc---ceeeeccccccCCCCC
Q 012912 110 VQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KL---TYMQHLDFEPVHADNP 185 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~---~~i~~~~~~~in~~~~ 185 (453)
...|.+.|||++||..+.+.+||+||.++..+ ..++|+|..||+.++|.++++++. .. ..++....++.+.+..
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp--~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYP--GKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCC--CceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 35677999999999999999999999986543 357999999999999988887652 11 1222221111122222
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcC-----CcEEEEEccCceeChhHHHHHHHHHH
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHN-----FSRVIILEDDMEIAPDFFDYFEAAAD 236 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~-----~~~vIILEDDl~~SPDFf~Yf~~~l~ 236 (453)
++ .+|++....... .+.++++++|+.+.||+++-+-+.++
T Consensus 115 Gk-----------~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 115 GK-----------LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred ch-----------HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 21 124444444434 79999999999999999886655543
No 45
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=98.27 E-value=1.1e-05 Score=76.23 Aligned_cols=113 Identities=12% Similarity=0.300 Sum_probs=73.5
Q ss_pred eEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHH-H----HHhhcC-CcceeeeccccccCCCCCCCh
Q 012912 116 AVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVK-S----KALSYD-KLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 116 PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~-~----vi~s~~-~~~~i~~~~~~~in~~~~~~~ 188 (453)
.|+|++||.+ ++|.++|+||+++.. ..++|+|..||+.+.+. + ..+.++ .+..+. ..+ +.|.
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~---~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~---~~~-~~G~---- 69 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDY---PNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFH---VEP-LPGA---- 69 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCC---CCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEE---cCC-CCCC----
Confidence 4899999996 899999999998643 34789999999877653 3 333332 222221 111 2221
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
+ +...++|+..+-. +++.++++++|+.++|+++..+... ++ ++.+.+|++-
T Consensus 70 ~-----~~a~n~g~~~a~~--~~d~i~~lD~D~~~~~~~l~~l~~~---~~-~~~~~~v~~~ 120 (236)
T cd06435 70 K-----AGALNYALERTAP--DAEIIAVIDADYQVEPDWLKRLVPI---FD-DPRVGFVQAP 120 (236)
T ss_pred c-----hHHHHHHHHhcCC--CCCEEEEEcCCCCcCHHHHHHHHHH---hc-CCCeeEEecC
Confidence 0 1112335544322 2789999999999999999976654 44 5788888763
No 46
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.20 E-value=1.2e-05 Score=80.80 Aligned_cols=120 Identities=15% Similarity=0.234 Sum_probs=85.5
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh--cCCcceeeeccccccCCCCCCChh
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS--YDKLTYMQHLDFEPVHADNPGELT 189 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s--~~~~~~i~~~~~~~in~~~~~~~~ 189 (453)
|+.++|+|++|||++++..||++|.++.++ ...+++.++|+.+.+.+.+.. +.++..++. +.|.|-++++.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~---~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~----~~NlG~agg~n 74 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYP---DDVIVVVDNGSTDGSLEALKARFFPNVRLIEN----GENLGFAGGFN 74 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCC---CcEEEEccCCCCCCCHHHHHhhcCCcEEEEEc----CCCccchhhhh
Confidence 677999999999999999999999997543 223445677887777777765 345555532 23666554332
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND 252 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd 252 (453)
-|+..++.. +++.+++|-+|.++.||+++ +++...+.++.++.+.+.-.
T Consensus 75 ----------~g~~~a~~~-~~~~~l~LN~D~~~~~~~l~---~ll~~~~~~~~~~~~~~~i~ 123 (305)
T COG1216 75 ----------RGIKYALAK-GDDYVLLLNPDTVVEPDLLE---ELLKAAEEDPAAGVVGPLIR 123 (305)
T ss_pred ----------HHHHHHhcC-CCcEEEEEcCCeeeChhHHH---HHHHHHHhCCCCeEeeeeEe
Confidence 255555543 23389999999999999987 66777777777777776544
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.15 E-value=1.3e-05 Score=77.09 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=75.0
Q ss_pred CCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC---cceeeeccccccCCCCCC
Q 012912 110 VQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK---LTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~---~~~i~~~~~~~in~~~~~ 186 (453)
..+|.+.|+|++||..+.+..++++|.+... ....++|+|..||+.++|.++++.+.. ...+..... +.|.|.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~-~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~-~~n~G~-- 81 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQ-DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPR-PGKLGL-- 81 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhc-cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEec-CCCCCH--
Confidence 3467899999999999999999999976432 234689999999999999988877521 111211111 112221
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHH
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAA 234 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~ 234 (453)
+. |++..+.....+.++++++|+.+.|++++-+-+.
T Consensus 82 --------~~----a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~ 117 (243)
T PLN02726 82 --------GT----AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKK 117 (243)
T ss_pred --------HH----HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 11 3444444445789999999999999998865543
No 48
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.15 E-value=1.8e-05 Score=80.31 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=82.8
Q ss_pred cccCCCCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCC
Q 012912 105 RLVDKVQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADN 184 (453)
Q Consensus 105 ~~~~~~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~ 184 (453)
.++....++.+.|+|++||..+++.+||++|.++... ....+|+|..||+.+.|.++++++.. ..+.....-..+..+
T Consensus 23 ~~~~~~~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgStD~T~~ia~~~~~-~v~~~~~~~~~~~~n 100 (306)
T PRK13915 23 ELVAAKAGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGSTDATAERAAAAGA-RVVSREEILPELPPR 100 (306)
T ss_pred HHHhccCCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCCccHHHHHHHHhcc-hhhcchhhhhccccC
Confidence 3333335677999999999999999999999985321 23468999999999999999887731 111110000000111
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCce-eChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 185 PGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDME-IAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 185 ~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~-~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
.+ ... |+..-+.....+.+++++.|+. +.|+++. +++..+..++.+..+.|+
T Consensus 101 ~G-kg~----------A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~---~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PG-KGE----------ALWRSLAATTGDIVVFVDADLINFDPMFVP---GLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CC-HHH----------HHHHHHHhcCCCEEEEEeCccccCCHHHHH---HHHHHHHhCCCceEEEEE
Confidence 11 111 3333343345799999999996 8999876 444445556667666654
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.11 E-value=2.4e-05 Score=73.16 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=71.5
Q ss_pred EEEEecCchHHHHHHHHHHHhccCC-CCCCccEEEeeCCCChhHHHHHhhcCC-c-ceeeeccccccCCCCCCChhHHHH
Q 012912 117 VVIMACNRANYLERTINSVFKYQGS-VASKYPLFVSQDGSNPQVKSKALSYDK-L-TYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~-~~~~~~LiVsqDG~~~et~~vi~s~~~-~-~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
|||++||..+++.+||++|++.... ....++|+|..||+.+.+.++++.+.. . ..++.... +.|.|.. +
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~-~~n~G~~----~--- 72 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTL-PKNRGKG----G--- 72 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEc-ccCCCcH----H---
Confidence 6899999999999999999985310 124579999999999989888887621 1 01222211 1233321 1
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHH
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAA 234 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~ 234 (453)
|++.-+.....+.++++++|..+.|+++.-+.+.
T Consensus 73 -------a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 73 -------AVRAGMLAARGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred -------HHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4444444445799999999999999999876655
No 50
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=1.6e-05 Score=68.10 Aligned_cols=100 Identities=19% Similarity=0.225 Sum_probs=68.7
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcc-eeeeccccccCCCCCCChhH
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLT-YMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~-~i~~~~~~~in~~~~~~~~~ 190 (453)
+|.+.|+|++||+++++.++|+|++++... .++|+|..||+.++|.++++.+.... .+..... ..|.|.
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~---~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~-~~~~g~------ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYK---DFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLIN-ERNGGL------ 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhc---ceEEEEEeCCCCCChHHHHHHHhhhcceEEEeec-ccCCCh------
Confidence 577899999999999999999999996532 26799999999999999988874211 1111101 112221
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHH
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDY 230 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Y 230 (453)
+. |.+..+.....+.+.++++|.. .|+-+..
T Consensus 72 ----~~----~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 72 ----GA----ARNAGLEYARGDYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred ----HH----HHHhhHHhccCCEEEEEccCCC-CCHHHHH
Confidence 11 3333333223588999999999 8777776
No 51
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=98.07 E-value=1.9e-05 Score=76.43 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=72.7
Q ss_pred EEEEecCch-HHHHHHHHHHHhccCCC-------CCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCCh
Q 012912 117 VVIMACNRA-NYLERTINSVFKYQGSV-------ASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 117 IlI~a~NRP-~~l~R~LesL~k~~~~~-------~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~ 188 (453)
|||.+||-+ +++.++|+||+++..+. .++++|+|..||+.+ .|.|. .
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d----------------------~~~gk---~ 55 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK----------------------KNRGK---R 55 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc----------------------ccCcc---h
Confidence 689999995 89999999999987642 467899999999976 02111 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCC
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWN 251 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawN 251 (453)
.+ ..++..+++......+.+.+++++.|..+.||++..+.+. +..||++.+|+|..
T Consensus 56 ~~----~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~---~~~~p~vg~v~g~~ 111 (244)
T cd04190 56 DS----QLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKA---MDKDPEIGGVCGEI 111 (244)
T ss_pred HH----HHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHH---HHhCCCEEEEEeee
Confidence 00 0011113333332235899999999999999999876544 44689999998864
No 52
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.03 E-value=3.6e-05 Score=73.64 Aligned_cols=96 Identities=23% Similarity=0.242 Sum_probs=71.0
Q ss_pred eeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHH
Q 012912 115 AAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 115 ~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
+.|+|++||..+++.+||+||..+ . .+|+|..||+.+.|.++++.+. +..+.+ + +.+ .
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-~-----~eiivvD~gStD~t~~i~~~~~-~~v~~~----~-~~g----------~ 59 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-V-----DEIIVVDSGSTDRTVEIAKEYG-AKVYQR----W-WDG----------F 59 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-c-----CEEEEEeCCCCccHHHHHHHcC-CEEEEC----C-CCC----------h
Confidence 678999999999999999999874 1 2799999999999999998774 222221 1 211 1
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHH
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAAD 236 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ 236 (453)
+...++|++. ...+.+++++.|..++|++++-+.+.+.
T Consensus 60 ~~~~n~~~~~----a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 60 GAQRNFALEL----ATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHHHh----CCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 2223445544 3578999999999999999997766543
No 53
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.85 E-value=8.3e-05 Score=75.88 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC--cceeeeccccccCCCCCCC
Q 012912 110 VQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK--LTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~--~~~i~~~~~~~in~~~~~~ 187 (453)
+.++.+.|+|++||..+.+.+++++|.+.-......++|+|..||+.+.|.++++++.. ...+.....+ .|.|..
T Consensus 3 ~~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~-~n~G~~-- 79 (325)
T PRK10714 3 HPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLN-RNYGQH-- 79 (325)
T ss_pred CCCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeC-CCCCHH--
Confidence 34567899999999999999999998753222234679999999999999888776421 1112111111 132221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHH
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
+ |+..-++....+.+++++.|+...|+.+.-|-+.+
T Consensus 80 --~----------A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~ 115 (325)
T PRK10714 80 --S----------AIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKA 115 (325)
T ss_pred --H----------HHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1 44444444458999999999999999988776655
No 54
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.69 E-value=0.00035 Score=71.62 Aligned_cols=126 Identities=18% Similarity=0.195 Sum_probs=82.6
Q ss_pred CCCCceeeEEEEecCchHHHHHHHHHHHhccC-----CCCCCccEEEeeCCCChhHHHHHhhcCCc-----ceeeecccc
Q 012912 109 KVQVPVAAVVIMACNRANYLERTINSVFKYQG-----SVASKYPLFVSQDGSNPQVKSKALSYDKL-----TYMQHLDFE 178 (453)
Q Consensus 109 ~~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~-----~~~~~~~LiVsqDG~~~et~~vi~s~~~~-----~~i~~~~~~ 178 (453)
+...+.+.|+|++||..+++.++|+++.++-. .....++|+|..||+.+.|.++++.+..- ..++.+..
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~- 144 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSL- 144 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEc-
Confidence 35577899999999999999999999986421 01235799999999999999888776210 11222211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 179 PVHADNPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 179 ~in~~~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
+.|.|..+ |+..-+.....+.+++++.|....|+.+.-+.+.+.-..+ +.+..|.|.
T Consensus 145 ~~N~G~~~--------------A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~-~~~dvV~Gs 201 (333)
T PTZ00260 145 LRNKGKGG--------------AVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQ-NGLGIVFGS 201 (333)
T ss_pred CCCCChHH--------------HHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhc-cCCceEEee
Confidence 22433211 3333333334799999999999999998877766654433 334444443
No 55
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00084 Score=69.50 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=82.4
Q ss_pred CceeeEEEEecCchH-HHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-Cc-ceeeeccccccCCCCCCCh
Q 012912 112 VPVAAVVIMACNRAN-YLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KL-TYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~-~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~-~~i~~~~~~~in~~~~~~~ 188 (453)
+|.+.|+|.+||=+. .++++++++.++..+ ..+++|..|++.+++.++++... .. ..++....+..+.+.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp---~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK---- 125 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYP---RYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGK---- 125 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCC---CceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccc----
Confidence 588999999999998 999999999997654 37899999999999998888763 21 112211000112111
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
+. |+++.+....+|.|++++-|-.+.|||+. ++...+++++.+.+++
T Consensus 126 ------~~----al~~~l~~~~~d~V~~~DaD~~~~~d~l~---~~~~~f~~~~~~~v~~ 172 (439)
T COG1215 126 ------AG----ALNNGLKRAKGDVVVILDADTVPEPDALR---ELVSPFEDPPVGAVVG 172 (439)
T ss_pred ------hH----HHHHHHhhcCCCEEEEEcCCCCCChhHHH---HHHhhhcCCCeeEEeC
Confidence 11 44444544458999999999999999998 4555566666663444
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=97.47 E-value=0.002 Score=63.78 Aligned_cols=118 Identities=9% Similarity=0.179 Sum_probs=73.4
Q ss_pred eeEEEEecCchHH-HHHHHHHHHhc---cCCCCCCccEEEeeCCCChhHH--------HHHhhcCCcceeeeccccccCC
Q 012912 115 AAVVIMACNRANY-LERTINSVFKY---QGSVASKYPLFVSQDGSNPQVK--------SKALSYDKLTYMQHLDFEPVHA 182 (453)
Q Consensus 115 ~PIlI~a~NRP~~-l~R~LesL~k~---~~~~~~~~~LiVsqDG~~~et~--------~vi~s~~~~~~i~~~~~~~in~ 182 (453)
+.|++++||-+.. +..+|++..+. +.. +..++|||.+|+++++.. ++++.+...-.++.. ..+.+.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~-~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~-~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGL-ADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYR-RRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCC-cCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEE-EcCCCC
Confidence 4799999999976 88888887642 221 246899999999987542 133334211112111 111133
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhh--cCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 183 DNPGELTAYYKIARHYKWALDNLFYK--HNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 183 ~~~~~~~~y~~IarHYk~aLs~vF~~--~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
+.. .+ +|+..+.. .+++.+++++-|..+.|||+.. +.+.+..||+|..|.+-
T Consensus 79 g~K---ag----------~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~---~v~~~~~~~~vg~vq~~ 132 (254)
T cd04191 79 GRK---AG----------NIADFCRRWGSRYDYMVVLDADSLMSGDTIVR---LVRRMEANPRAGIIQTA 132 (254)
T ss_pred Ccc---HH----------HHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHH---HHHHHHhCCCEEEEeCC
Confidence 221 11 22222222 2479999999999999999985 45555679999999753
No 57
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.28 E-value=0.0019 Score=72.60 Aligned_cols=116 Identities=10% Similarity=0.227 Sum_probs=78.0
Q ss_pred CceeeEEEEecCch-----HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHH--------HHhhcC---Ccceeeec
Q 012912 112 VPVAAVVIMACNRA-----NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKS--------KALSYD---KLTYMQHL 175 (453)
Q Consensus 112 ~p~~PIlI~a~NRP-----~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~--------vi~s~~---~~~~i~~~ 175 (453)
.+.+.|+|.+||-. +.++.+++||.+..+ .++++++|.+|+.++++.. ..+.+. .+.+.+.
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~--~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R- 199 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGH--GAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR- 199 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC-
Confidence 46689999999987 358889999987533 4578999999999987542 333442 2333221
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHHHhhh--cCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec
Q 012912 176 DFEPVHADNPGELTAYYKIARHYKWALDNLFYK--HNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS 249 (453)
Q Consensus 176 ~~~~in~~~~~~~~~y~~IarHYk~aLs~vF~~--~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa 249 (453)
..|.+.. .+ .++..+.. -+|+++|++|-|..++|||+.- +...++.||++..|.+
T Consensus 200 ---~~n~~~K---aG----------Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~---lv~~m~~dP~vGlVQt 256 (691)
T PRK05454 200 ---RRNVGRK---AG----------NIADFCRRWGGAYDYMVVLDADSLMSGDTLVR---LVRLMEANPRAGLIQT 256 (691)
T ss_pred ---CcCCCcc---HH----------HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHH---HHHHHhhCcCEEEEeC
Confidence 2233221 11 12222222 2479999999999999999885 4455667999999985
No 58
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.25 E-value=0.0039 Score=62.03 Aligned_cols=116 Identities=18% Similarity=0.311 Sum_probs=71.7
Q ss_pred eEEEEecCch------HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCC
Q 012912 116 AVVIMACNRA------NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNP 185 (453)
Q Consensus 116 PIlI~a~NRP------~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~ 185 (453)
.|||++.+|- +.|+.||++|.+.+. ...++|+|..||+..++.+.+..+ .-..++.+....+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~--~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~------ 72 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQS--DPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGE------ 72 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCC--CCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCC------
Confidence 3789999998 446666888888543 577899999999987764444332 2122343221110
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhh-cCCCcEEEEe
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL-DKDKSIMAVS 248 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly-~~D~sI~~IS 248 (453)
.+..|+-.+.|+..+ ..+.+++++-||.++|+|+..+.+-+..+ +....+.+..
T Consensus 73 -----~f~~a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 73 -----PFSRAKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred -----CcCHHHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 112333233344443 47999999999999999999887722233 3333444433
No 59
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=96.99 E-value=0.0046 Score=67.16 Aligned_cols=110 Identities=15% Similarity=0.267 Sum_probs=73.2
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh----cCCcceeeeccccccCCCCCCC
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS----YDKLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s----~~~~~~i~~~~~~~in~~~~~~ 187 (453)
.|.+.|+|.+||=.+.+.++|++++.... .++++|+|..|+++++|.+.++. +.++..+... +.+..+
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ld--Y~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~-----~~gp~~- 136 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLD--YENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVP-----HDGPTS- 136 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCC--CCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeC-----CCCCCC-
Confidence 56689999999999999999999754321 25689999999988877665554 4443322211 111111
Q ss_pred hhHHHHHHHHHHHHHHHHhh--h---cCCcEEEEEccCceeChhHHHHHHHHH
Q 012912 188 LTAYYKIARHYKWALDNLFY--K---HNFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~--~---~~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
+ +...++|+..++. . .+++.+++++=|..++||++..++..+
T Consensus 137 -K-----a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 137 -K-----ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL 183 (504)
T ss_pred -H-----HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence 1 2223445555532 1 125899999999999999999887653
No 60
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=96.46 E-value=0.021 Score=64.76 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHH-hccCCCCCCccEEEeeCCCChhHHHHHhh----cCCcceeeeccccccCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVF-KYQGSVASKYPLFVSQDGSNPQVKSKALS----YDKLTYMQHLDFEPVHADNP 185 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~-k~~~~~~~~~~LiVsqDG~~~et~~vi~s----~~~~~~i~~~~~~~in~~~~ 185 (453)
..|.+.|+|++||=...+.+++++++ +..+| .++|+|..|+++++|.++++. |..+.-+.... .++.
T Consensus 61 ~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP---~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~-----~g~~ 132 (727)
T PRK11234 61 DEKPLAIMVPAWNETGVIGNMAELAATTLDYE---NYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCAR-----PGPT 132 (727)
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHHhCCCC---CeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCC-----CCCC
Confidence 34668999999999999999999986 44443 379999987776666666554 43333222211 1111
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhc-----CCcEEEEEccCceeChhHHHHHHHHH
Q 012912 186 GELTAYYKIARHYKWALDNLFYKH-----NFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~-----~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
+ -+.-.++|+..++... .++-+||.+=|+.++||++.+++.+.
T Consensus 133 g-------Ka~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l~ 180 (727)
T PRK11234 133 S-------KADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLV 180 (727)
T ss_pred C-------HHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhhc
Confidence 1 1233445666665321 25668899999999999999766554
No 61
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=96.06 E-value=0.029 Score=53.78 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh----cC--CcceeeeccccccCCCCCC
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS----YD--KLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s----~~--~~~~i~~~~~~~in~~~~~ 186 (453)
+.-.|+++|||--+-++-++.-+.++-+....+++|+|..|++.+.|.+++++ |. .++-. + ... ..|.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~--p-R~~-klGL-- 76 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLK--P-RTK-KLGL-- 76 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEE--e-ccC-cccc--
Confidence 44678999999777677666666665544567899999999998877777765 42 22211 1 111 1222
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhh
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL 238 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly 238 (453)
...|.-|+. ....+++|+++-|+-=.|-|+.=|-++....
T Consensus 77 --------gtAy~hgl~----~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 77 --------GTAYIHGLK----HATGDFIVIMDADLSHHPKFIPEFIRLQKEG 116 (238)
T ss_pred --------hHHHHhhhh----hccCCeEEEEeCccCCCchhHHHHHHHhhcc
Confidence 112222433 2347999999999999999998666655433
No 62
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=95.92 E-value=0.062 Score=60.70 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHH-hccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVF-KYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNP 185 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~-k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~ 185 (453)
..+.+.|+|.+||=.+-+.+++++++ +.++| .+.|+|..+..+.+|.+.++.. .+++-|..+. .+..
T Consensus 69 ~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp---~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~-----~gp~ 140 (703)
T PRK15489 69 DEQPLAIMVPAWKEYDVIAKMIENMLATLDYR---RYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPH-----DGPT 140 (703)
T ss_pred CCCceEEEEeCCCcHHHHHHHHHHHHhcCCCC---CeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCC-----CCCC
Confidence 34568999999999999999999975 55554 4688885433333566555543 3333333221 1111
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhc-----CCcEEEEEccCceeChhHHHHHHHHH
Q 012912 186 GELTAYYKIARHYKWALDNLFYKH-----NFSRVIILEDDMEIAPDFFDYFEAAA 235 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~-----~~~~vIILEDDl~~SPDFf~Yf~~~l 235 (453)
+ -++-.+||+..+|... .++.+++.+=|.+++||++.+|+..+
T Consensus 141 g-------Ka~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~ 188 (703)
T PRK15489 141 C-------KADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL 188 (703)
T ss_pred C-------HHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc
Confidence 1 2344566777776521 13448999999999999999987544
No 63
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=94.73 E-value=0.25 Score=46.20 Aligned_cols=110 Identities=21% Similarity=0.361 Sum_probs=65.5
Q ss_pred eeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeecc--ccccCCCCCCChhHH
Q 012912 115 AAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLD--FEPVHADNPGELTAY 191 (453)
Q Consensus 115 ~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~--~~~in~~~~~~~~~y 191 (453)
++|.|+.-.|- +-..++.+.+.+. + -.++.|=..||......+....++....-.+.+ ..+-.+||.
T Consensus 2 ~ki~vInL~~~~~Rr~~~~~~~~~~-~---~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~------ 71 (200)
T PF01755_consen 2 IKIYVINLDRSTERRERIQQQLAKL-G---INFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCA------ 71 (200)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHc-C---CceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeeh------
Confidence 46666666554 5555555556553 2 247888888998765544444443111111000 111122332
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhc
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLD 239 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~ 239 (453)
-.|++ +...+.+. +.+.++|||||..++++|-+.++.++....
T Consensus 72 ---lSH~~-~w~~~v~~-~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~ 114 (200)
T PF01755_consen 72 ---LSHIK-AWQRIVDS-GLEYALILEDDVIFDPDFKEFLEEILSHIP 114 (200)
T ss_pred ---hhHHH-HHHHHHHc-CCCeEEEEeccccccccHHHHHHHHHhhcc
Confidence 23444 55566654 579999999999999999999888877655
No 64
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=88.49 E-value=2.2 Score=41.31 Aligned_cols=87 Identities=18% Similarity=0.338 Sum_probs=50.3
Q ss_pred EEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHHH
Q 012912 118 VIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIARH 197 (453)
Q Consensus 118 lI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~IarH 197 (453)
+|++.|-++.+.+|+++|.+...+ +...|-| | +.....+ +++
T Consensus 3 iI~c~n~~~~~~~~~~~i~~~~~~--~~~~i~i--~---------------------------~~~~~~s------~~~- 44 (217)
T PF13712_consen 3 IIICVNDEELYEECLRSIKRLIGP--PGELIEI--D---------------------------NVRNAKS------MAA- 44 (217)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT----TEEEEEE--E----------------------------SSS-S-------TTT-
T ss_pred EEEEECCHHHHHHHHHHHHhhCCC--CceEEEE--e---------------------------ccCCCcC------HHH-
Confidence 577888999999999999997543 1111111 1 1111121 223
Q ss_pred HHHHHHHHhhhcCCcEEEEEccCceeC-hhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 198 YKWALDNLFYKHNFSRVIILEDDMEIA-PDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 198 Yk~aLs~vF~~~~~~~vIILEDDl~~S-PDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
|.+...+..+++.+|++=||+.+. ++|+ ..+++.++.|+++..|+
T Consensus 45 ---~yN~a~~~a~~~ylvflHqDv~i~~~~~l---~~il~~~~~~~~~G~iG 90 (217)
T PF13712_consen 45 ---AYNEAMEKAKAKYLVFLHQDVFIINENWL---EDILEIFEEDPNIGMIG 90 (217)
T ss_dssp ---HHHHHGGG--SSEEEEEETTEE-SSHHHH---HHHHHHHHH-TTEEEEE
T ss_pred ---HHHHHHHhCCCCEEEEEeCCeEEcchhHH---HHHHHHHhhCCCccEEE
Confidence 444445545689999999999985 5555 56777777789886654
No 65
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=87.90 E-value=5 Score=35.30 Aligned_cols=95 Identities=25% Similarity=0.459 Sum_probs=51.5
Q ss_pred EEEec-CchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 118 VIMAC-NRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 118 lI~a~-NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
.|+.- ++|+-..++.+.+... + -.+..+=..||.............. ...... ..+. .++++.- -..
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-~---~~~~~~~Avd~~~~~~~~~~~~~~~-~~~~~~-~~~l---~~gEiGC---~lS 70 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-G---LDFEFFDAVDGKDLSEEELAALYDA-LFLPRY-GRPL---TPGEIGC---FLS 70 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-C---CCeEEEeccccccCCHHHHHHHhHH-Hhhhhc-CCCC---ChhhHHH---HHH
Confidence 33433 5677666666666553 2 2467787888876544433322211 000000 0011 1233322 245
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChh
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPD 226 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPD 226 (453)
|++ +...+.+. +.+.++|+|||..++|+
T Consensus 71 H~~-~w~~~~~~-~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 71 HYK-LWQKIVES-NLEYALILEDDAILDPD 98 (128)
T ss_pred HHH-HHHHHHHc-CCCeEEEEccCcEECCC
Confidence 554 55566654 56999999999999999
No 66
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=86.68 E-value=8.7 Score=39.35 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=66.3
Q ss_pred ceeeEEEEecCch--HHHHHHHHHHHhccCCC-CCCccEEEe-eCCCChhHH----HHHhhcC-----Ccceeeecccc-
Q 012912 113 PVAAVVIMACNRA--NYLERTINSVFKYQGSV-ASKYPLFVS-QDGSNPQVK----SKALSYD-----KLTYMQHLDFE- 178 (453)
Q Consensus 113 p~~PIlI~a~NRP--~~l~R~LesL~k~~~~~-~~~~~LiVs-qDG~~~et~----~vi~s~~-----~~~~i~~~~~~- 178 (453)
....|-|.+-.|+ .||..||.||+..-.+. .++.-|+|. .|-...... ++...|. +.-.+-++...
T Consensus 52 ~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~~ 131 (297)
T PF04666_consen 52 KKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPSY 131 (297)
T ss_pred CeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccccc
Confidence 3477888999987 68999999999843221 223444443 343322222 2222231 22222111110
Q ss_pred -c------cCCCCCC-ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcC
Q 012912 179 -P------VHADNPG-ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDK 240 (453)
Q Consensus 179 -~------in~~~~~-~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~ 240 (453)
| .+.+... ...=+.+-.--|-+.+...-+ ..++.+.||||.+.+|+|+..+...+...+.
T Consensus 132 Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~--~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~ 199 (297)
T PF04666_consen 132 YPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQN--LGDYYLQLEDDVIAAPGFLSRIKRFVEAWES 199 (297)
T ss_pred CCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHh--cCCeEEEecCCeEechhHHHHHHHHHHHhcC
Confidence 0 0111100 010001112223333333222 2689999999999999999999999988765
No 67
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=85.63 E-value=5.7 Score=38.63 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=67.8
Q ss_pred eEEEEecC--chHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC---Cc-ceeeeccccccCCCCCCChh
Q 012912 116 AVVIMACN--RANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD---KL-TYMQHLDFEPVHADNPGELT 189 (453)
Q Consensus 116 PIlI~a~N--RP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~---~~-~~i~~~~~~~in~~~~~~~~ 189 (453)
.|+++|.+ -..++.-++.||++.. .....++|..|+-.++.++.++... .. ..+....... ...... ..
T Consensus 2 ~i~~~a~d~~y~~~~~v~i~Sl~~~~---~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~-~~~~~~-~~ 76 (246)
T cd00505 2 AIVIVATGDEYLRGAIVLMKSVLRHR---TKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILD-SVDSEH-LK 76 (246)
T ss_pred eEEEEecCcchhHHHHHHHHHHHHhC---CCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccC-cchhhh-hc
Confidence 35555554 6688899999999953 2267888888887666665554431 11 1111111100 000000 01
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHH
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEA 233 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~ 233 (453)
.+...+..+|..+..++. .++++|.|+.|+++--|.=+.++.
T Consensus 77 ~~~~~~~y~RL~i~~llp--~~~kvlYLD~D~iv~~di~~L~~~ 118 (246)
T cd00505 77 RPIKIVTLTKLHLPNLVP--DYDKILYVDADILVLTDIDELWDT 118 (246)
T ss_pred CccccceeHHHHHHHHhh--ccCeEEEEcCCeeeccCHHHHhhc
Confidence 233456667788888887 389999999999998887776643
No 68
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=84.82 E-value=6.8 Score=37.90 Aligned_cols=110 Identities=18% Similarity=0.304 Sum_probs=63.3
Q ss_pred EEecCc--hHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC--CcceeeeccccccCCCCCCChhHHHHH
Q 012912 119 IMACNR--ANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD--KLTYMQHLDFEPVHADNPGELTAYYKI 194 (453)
Q Consensus 119 I~a~NR--P~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~--~~~~i~~~~~~~in~~~~~~~~~y~~I 194 (453)
++++|. -..+.-++.||++..+ ...+.++|..|+-.++..+.++++. .-..+...................+..
T Consensus 4 ~~~~d~~y~~~~~~~l~Sl~~~~~--~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 81 (248)
T cd04194 4 VFAIDDNYAPYLAVTIKSILANNS--KRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISY 81 (248)
T ss_pred EEEecHhhHHHHHHHHHHHHhcCC--CCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccccH
Confidence 444444 3667888899998432 2567899988887666666555541 011121111110000000001112234
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHH
Q 012912 195 ARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFE 232 (453)
Q Consensus 195 arHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~ 232 (453)
+..+|.-+..++. +++++|.|+-|+++--|.=+.++
T Consensus 82 ~~y~rl~l~~ll~--~~~rvlylD~D~lv~~di~~L~~ 117 (248)
T cd04194 82 ATYYRLLIPDLLP--DYDKVLYLDADIIVLGDLSELFD 117 (248)
T ss_pred HHHHHHHHHHHhc--ccCEEEEEeCCEEecCCHHHHhc
Confidence 4556667777776 38999999999999888777664
No 69
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=82.44 E-value=27 Score=30.35 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhh
Q 012912 18 RWLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRI 74 (453)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (453)
|+..++++++++.+-.-++ .||...+++.+-.++...=.++-..+++.+..+....
T Consensus 3 ~~~~~~l~~lvl~L~~~l~-~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~ 58 (110)
T PF10828_consen 3 KYIYIALAVLVLGLGGWLW-YQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 5677788887777766666666666777776655554
No 70
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.54 E-value=13 Score=41.06 Aligned_cols=118 Identities=14% Similarity=0.261 Sum_probs=75.6
Q ss_pred eeeEEEEecCch-----HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHH--------HHHhhcCCcceeeecccccc
Q 012912 114 VAAVVIMACNRA-----NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVK--------SKALSYDKLTYMQHLDFEPV 180 (453)
Q Consensus 114 ~~PIlI~a~NRP-----~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~--------~vi~s~~~~~~i~~~~~~~i 180 (453)
.++|++.+||-- .-|+-+-+||.+- ...+.|++||-+|..++++. +++++-++.+.|-.... ..
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~T--g~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrR-r~ 221 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAAT--GHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRR-RR 221 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhh--CCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehH-hh
Confidence 489999999953 2244445566662 35789999999999988642 24444444444422111 22
Q ss_pred CCCC-CCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec
Q 012912 181 HADN-PGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS 249 (453)
Q Consensus 181 n~~~-~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa 249 (453)
|+++ ++++..+ . -+|| -.|++.+||+-|-+.++|-+- .+..+++.+|...-|-.
T Consensus 222 n~~RKaGNIaDf---c--rRwG-------~~Y~~MlVLDADSvMtgd~lv---rLv~~ME~~P~aGlIQt 276 (736)
T COG2943 222 NVKRKAGNIADF---C--RRWG-------SAYSYMLVLDADSVMTGDCLV---RLVRLMEANPDAGLIQT 276 (736)
T ss_pred hhcccccCHHHH---H--HHhC-------cccceEEEeecccccCchHHH---HHHHHHhhCCCCceeec
Confidence 4443 3444331 1 1333 148999999999999999765 67778888988776643
No 71
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.02 E-value=8.3 Score=33.49 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 012912 17 IRWLLLAAAVAFIFIQMRLFA 37 (453)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~ 37 (453)
.|+++++.+++.+++|..++-
T Consensus 1 m~~~~~vll~ll~~l~y~l~~ 21 (105)
T PRK00888 1 MRLLTLLLLALLVWLQYSLWF 21 (105)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 367888888888889888753
No 72
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=77.69 E-value=8.1 Score=38.31 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred EEEEe-cCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhH-HHHHhhcC-CcceeeeccccccCCCCCCChhHHHH
Q 012912 117 VVIMA-CNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQV-KSKALSYD-KLTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 117 IlI~a-~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et-~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
|+|.| ++|++.|.+.|..+.+.. . -.+|+|.=-++.+.. ....-+.. .+..++.. . |. ....+..
T Consensus 3 vvi~t~~~R~~~L~~~l~~l~~~~--~--l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~---~-ns-LnnRF~p--- 70 (247)
T PF09258_consen 3 VVINTSYKRSDLLKRLLRHLASSP--S--LRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSS---R-NS-LNNRFLP--- 70 (247)
T ss_dssp EEEEE-SS-HHHHHHHHHHHTTST--T--EEEEEEEEE-TS--THHHHHT---S-EEEEEES---S-HH-GGGGGS----
T ss_pred EEEEecccchHHHHHHHHHHHcCC--C--CCeEEEEeCCCCCCCcccccCCCCceEEEEecC---C-cc-HHhcCcC---
Confidence 67888 999999999999997742 2 234555433233221 11111111 12222211 0 10 0011111
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEE
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMA 246 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ 246 (453)
+....-+.|+.++||+.++++=++|-=++-. +.-.+|.+
T Consensus 71 ------------~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~--~~pdrlVG 109 (247)
T PF09258_consen 71 ------------DPEIETDAVLSLDDDVMLSCDELEFAFQVWR--EFPDRLVG 109 (247)
T ss_dssp -------------TT--SSEEEEEETTEEE-HHHHHHHHHHHC--CSTTSEEE
T ss_pred ------------ccccCcceEEEecCCcccCHHHHHHHHHHHH--hChhheeC
Confidence 0111248899999999999999997555544 33335543
No 73
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.41 E-value=3.6 Score=41.18 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhh
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL 238 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly 238 (453)
....|++ ......+. +-+++.|+|||++++.||-+..+..+...
T Consensus 71 C~lSH~~-lw~~~~~~-~~~yi~I~EDDV~l~~~f~~~l~~~~~~~ 114 (255)
T COG3306 71 CYLSHLK-LWKKALEE-NLPYILILEDDVVLGEDFEEFLEDDLKLP 114 (255)
T ss_pred HHHHHHH-HHHHHHhC-CCCeEEEecccccccccHHHHHHHHHhhh
Confidence 4567775 44444443 56789999999999999999999888764
No 74
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=76.92 E-value=34 Score=28.24 Aligned_cols=18 Identities=33% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 012912 20 LLLAAAVAFIFIQMRLFA 37 (453)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (453)
.++++|++|+++-.-++.
T Consensus 2 a~lI~Aiaf~vLvi~l~~ 19 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIK 19 (90)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357888888888877743
No 75
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=75.91 E-value=6.3 Score=36.72 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred HHHHhhh-cCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCC-Ccc--------cC-CCce---eee
Q 012912 202 LDNLFYK-HNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQ-KQF--------VH-DPYV---LYR 267 (453)
Q Consensus 202 Ls~vF~~-~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~-~~~--------v~-d~~~---lyR 267 (453)
|...++. .+++.++|+++|+.++||++.-+-.-+. ||.+..|++.-.... .+. .. -+.. +-+
T Consensus 22 L~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~----~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 97 (175)
T PF13506_consen 22 LAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLA----DPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGG 97 (175)
T ss_pred HHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHh----CCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcC
Confidence 3334443 5699999999999999999886665553 488998987544211 111 00 0000 112
Q ss_pred cCCCcccccccchhhhhhhCC--CCCccchHH-HHHHHHhhcCCceeecCCcceeccCCC--CCChhHhHHhhh
Q 012912 268 SDFFPGLGWMLTRTTWDELSP--KWPKAYWDD-WLRLKENHKGRQFIRPEVCRTYNFGEH--GSSLGQFFQQYL 336 (453)
Q Consensus 268 sdffpgwGWalwr~~W~el~p--~WP~~~WDd-WlR~~~~rkgr~cI~PevSRt~niG~~--G~s~~~~f~~yl 336 (453)
..|.-|-.+++.|+.-+++.- .|....=|| .+-.....+|...+.+...-..+.+.. ..+..+++++.+
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~~~~~~s~~~~~~r~~ 171 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVPRTLEDSFRDFFRRQL 171 (175)
T ss_pred CCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccCccccccHHHHHHHHH
Confidence 334445556778888777531 122221233 454455666766655444434444432 235566776644
No 76
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=75.24 E-value=3 Score=43.25 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=49.2
Q ss_pred EEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCC--ChhHHHHHHH
Q 012912 119 IMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPG--ELTAYYKIAR 196 (453)
Q Consensus 119 I~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~--~~~~y~~Iar 196 (453)
|+.--||+ |...|++-+. --+.++|||.|||.-++.-++-+-|+-..+- +.+... -+|... .+.++ -.|
T Consensus 13 vi~~~~~~-l~~~~~~wr~----~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~-~~di~~-~lg~~~~i~~~~~--a~R 83 (348)
T PF03214_consen 13 VIPALRPN-LTDFLEEWRP----FFSPYHLIIVQDPDPNEEIKVPEGFDYEVYN-RNDIER-VLGAKTLIPFKGD--ACR 83 (348)
T ss_pred Eeeccccc-HHHHHHHHHH----hhcceeEEEEeCCCccccccCCcccceeeec-HhhHHh-hcCCccccccccc--chh
Confidence 44445666 4444544433 3456899999999876554444444311110 000000 011111 11111 112
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHH
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFD 229 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~ 229 (453)
.+..+..+ .+++|.++|||.++.|++-
T Consensus 84 ----~fGyL~s~--~~yivsiDDD~~P~~D~~g 110 (348)
T PF03214_consen 84 ----NFGYLVSK--KDYIVSIDDDCLPAKDDFG 110 (348)
T ss_pred ----hhHhhhcc--cceEEEEccccccccCCcc
Confidence 22223333 5899999999999999874
No 77
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=72.26 E-value=47 Score=32.68 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=80.6
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHH
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYK 193 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~ 193 (453)
.++|||+--+|.++|+..|.-|...=....-++.|||. .+.+..+-|-+ . -
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi---------------------~Q~~~~~FNR~---~-----l 53 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVI---------------------EQVGNFRFNRA---K-----L 53 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEE---------------------EecCCccchhh---h-----h
Confidence 47899999999999999988775431111224455552 11111111111 0 0
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec--CCCCCCCcccCCCceeeecCCC
Q 012912 194 IARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS--WNDNGQKQFVHDPYVLYRSDFF 271 (453)
Q Consensus 194 IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa--wNdng~~~~v~d~~~lyRsdff 271 (453)
+..-|.+|+. ...++.+|+=|=|+.+-.|+..|-. ...|+=+++.- |+.. -|+ ..++
T Consensus 54 lNvG~~~a~k----~~~~dc~i~hDVDllP~~~~~~y~~------~~~p~H~s~~~~~~~~~-------lpy----~~~~ 112 (219)
T cd00899 54 LNVGFLEALK----DGDWDCFIFHDVDLLPENDRNLYGC------EEGPRHLSVPLDKFHYK-------LPY----KTYF 112 (219)
T ss_pred hhHHHHHHhh----cCCccEEEEecccccccCccccccC------CCCCeEEEEeecccccc-------cCc----cccc
Confidence 1122333432 2247899999999999999977522 33343333222 2221 111 1233
Q ss_pred cccccccchhhhhhhC------CCCCccchHHHHHHHHhhcCCceeecC
Q 012912 272 PGLGWMLTRTTWDELS------PKWPKAYWDDWLRLKENHKGRQFIRPE 314 (453)
Q Consensus 272 pgwGWalwr~~W~el~------p~WP~~~WDdWlR~~~~rkgr~cI~Pe 314 (453)
|--+++||+.|..+. .+|-..++|...| ....|..+.+|.
T Consensus 113 -Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~R--l~~~g~~~~r~~ 158 (219)
T cd00899 113 -GGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNR--IKAAGLKITRPS 158 (219)
T ss_pred -ccceeeEHHHHHHhCCcCCcCccCCcchHHHHHH--HHHCCCeEEecc
Confidence 457889999998764 2344444454445 455676666665
No 78
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=71.99 E-value=33 Score=36.03 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=81.5
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHH
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYY 192 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~ 192 (453)
-.++|||.-=||-+||...|.-|...-..-.=++.|||. .+.+.++-|- ..+
T Consensus 151 ~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVi---------------------eQ~g~~~FNR---akL---- 202 (372)
T KOG3916|consen 151 HKVAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVI---------------------EQAGNKPFNR---AKL---- 202 (372)
T ss_pred ceeEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEE---------------------EecCCCcccH---HHh----
Confidence 358999999999999999998875321001124566662 2222222111 000
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcccCCCceeeecCCCc
Q 012912 193 KIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFVHDPYVLYRSDFFP 272 (453)
Q Consensus 193 ~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v~d~~~lyRsdffp 272 (453)
..-.|..|+. ..+++.+|+=+=|+++--|. .+|.-.+.=-.+|.--| +-.+.|..+.+|.
T Consensus 203 -~NVGf~eAlk----d~~wdCfIFHDVDllPenDr--------NlY~C~~~PRH~sva~d-------k~gy~LPY~~~FG 262 (372)
T KOG3916|consen 203 -LNVGFLEALK----DYGWDCFIFHDVDLLPENDR--------NLYGCPEQPRHMSVALD-------KFGYRLPYKEYFG 262 (372)
T ss_pred -hhhHHHHHHH----hcCCCEEEEecccccccCCC--------CccCCCCCCcchhhhhh-------hccccccchhhhC
Confidence 1111222333 34579999999999885443 22222221111111111 1234555566777
Q ss_pred ccccccchhhhhhhCCCCCccch-------HHHHHHHHhhcCCceeec--CCcce
Q 012912 273 GLGWMLTRTTWDELSPKWPKAYW-------DDWLRLKENHKGRQFIRP--EVCRT 318 (453)
Q Consensus 273 gwGWalwr~~W~el~p~WP~~~W-------DdWlR~~~~rkgr~cI~P--evSRt 318 (453)
|-. |++++.+..+. ++|.+|| |.|-|. ...|...-|| ++.|-
T Consensus 263 GVs-alt~~qf~kIN-GFsN~fWGWGGEDDDl~nRv--~~ag~~IsRp~~~igrY 313 (372)
T KOG3916|consen 263 GVS-ALTKEQFRKIN-GFSNAFWGWGGEDDDLWNRV--QLAGMKISRPPPEIGRY 313 (372)
T ss_pred chh-hccHHHHHHhc-CCCchhcccCCcchHHHHHH--HhcCceeecCCCcccee
Confidence 654 67788888776 6777777 456663 3344444454 44444
No 79
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=64.57 E-value=24 Score=35.24 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=17.6
Q ss_pred HHHHHhhhcCCcEEEEEccCceeC
Q 012912 201 ALDNLFYKHNFSRVIILEDDMEIA 224 (453)
Q Consensus 201 aLs~vF~~~~~~~vIILEDDl~~S 224 (453)
.++-+|+. ++.||+|+-|.++-
T Consensus 83 ~lA~l~ss--FeevllLDaD~vpl 104 (271)
T PF11051_consen 83 WLALLFSS--FEEVLLLDADNVPL 104 (271)
T ss_pred hhhhhhCC--cceEEEEcCCcccc
Confidence 45567776 89999999999873
No 80
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=62.32 E-value=13 Score=34.86 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc-CCc---ceeeeccccccC-CCCCCChhHHHHHHHH
Q 012912 123 NRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKL---TYMQHLDFEPVH-ADNPGELTAYYKIARH 197 (453)
Q Consensus 123 NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~-~~~---~~i~~~~~~~in-~~~~~~~~~y~~IarH 197 (453)
|.-..+.-++.||++..+ ......++|..|+-.++..+.++.. ..+ ..+......... .........+...+.+
T Consensus 9 ~y~~~~~v~i~Sl~~~~~-~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T PF01501_consen 9 NYLEGAAVLIKSLLKNNP-DPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATF 87 (250)
T ss_dssp GGHHHHHHHHHHHHHTTT-T-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHhcc-ccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHH
Confidence 344667778888888532 2256668888887776666555443 222 122221111000 0000000111223444
Q ss_pred HHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec
Q 012912 198 YKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS 249 (453)
Q Consensus 198 Yk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa 249 (453)
+|+-+..+|. +++++|.|+.|..+--|-=+.|.. -..+.-+.++..
T Consensus 88 ~rl~i~~ll~--~~drilyLD~D~lv~~dl~~lf~~----~~~~~~~~a~~~ 133 (250)
T PF01501_consen 88 ARLFIPDLLP--DYDRILYLDADTLVLGDLDELFDL----DLQGKYLAAVED 133 (250)
T ss_dssp GGGGHHHHST--TSSEEEEE-TTEEESS-SHHHHC-------TTSSEEEEE-
T ss_pred HHhhhHHHHh--hcCeEEEEcCCeeeecChhhhhcc----cchhhhcccccc
Confidence 5566666664 489999999999997665554432 223445666655
No 81
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=61.79 E-value=45 Score=37.77 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhh-HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 25 AVAFIFIQMRLFATQSEYADRVAAAVEAENHC-TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
++.+.+.|-++=..|.+-+.+.+. .+.-+.= ..+.+.+.+.+...+.++.+||.+.+..+....++++..++|.+
T Consensus 338 g~~~~~~~q~~~~~~~~l~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 338 AVGGYALNRKVDRLDQELVQRQQA-NDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334446666666666666644433 2222111 22344556666777778888888888888888888888887743
No 82
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=59.32 E-value=76 Score=29.13 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=54.9
Q ss_pred ccccchHHHHHHHHHHHHHHH-HHhhhhhh-hhHHHHHHHHhhhhhhHHHHHHHHHHHHhh----hhhhHhHHHHhhhhh
Q 012912 12 IPICDIRWLLLAAAVAFIFIQ-MRLFATQS-EYADRVAAAVEAENHCTNQMRLLIDQISMQ----QGRIVALEDEKKRRD 85 (453)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 85 (453)
++|-..|.+|+.-++.++++. .-.-.+|+ +.-.-+.+.=|.=++.++.....++.++.+ +..|..||.+.+..+
T Consensus 28 rlcs~~~l~LlsLgl~~LLLV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqq 107 (138)
T PF03954_consen 28 RLCSGPRLLLLSLGLSLLLLVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQ 107 (138)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHH
Confidence 566677888777666666444 33444554 233345555566677788777777777764 445777888777777
Q ss_pred HHh--------HHHHHHHHHHH
Q 012912 86 EEC--------GQLKALVKDLE 99 (453)
Q Consensus 86 ~~~--------~~~~~~~~~~~ 99 (453)
++. .++|+.+.||+
T Consensus 108 QeLkAdhS~lllhvk~~~~DLr 129 (138)
T PF03954_consen 108 QELKADHSTLLLHVKQFPKDLR 129 (138)
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 763 34555555554
No 83
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=57.57 E-value=53 Score=33.84 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=38.3
Q ss_pred eeeEEEEecCchHH----HHHHHHHHHhccCC-CCCCccEEEeeCCCChhHHHHHhhc
Q 012912 114 VAAVVIMACNRANY----LERTINSVFKYQGS-VASKYPLFVSQDGSNPQVKSKALSY 166 (453)
Q Consensus 114 ~~PIlI~a~NRP~~----l~R~LesL~k~~~~-~~~~~~LiVsqDG~~~et~~vi~s~ 166 (453)
...|||++||-|.- +..|++.|.+-... ..-.++++|++||+.++|.+++-.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~ 125 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKF 125 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHH
Confidence 57899999998754 45566667653211 1246799999999999988877655
No 84
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=57.32 E-value=79 Score=31.91 Aligned_cols=124 Identities=15% Similarity=0.227 Sum_probs=69.9
Q ss_pred eEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHH-HHhhcCC-cceeeeccc----cccCCCCCCChh
Q 012912 116 AVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKS-KALSYDK-LTYMQHLDF----EPVHADNPGELT 189 (453)
Q Consensus 116 PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~-vi~s~~~-~~~i~~~~~----~~in~~~~~~~~ 189 (453)
+||+-+.|=...+..++.||+.. . .....++|..|+-..+..+ ..+.... -+.|.-... +.+.. .+. .
T Consensus 4 ~iv~~~~~y~~~~~~~i~Sil~n--~-~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~-~~~--~ 77 (280)
T cd06431 4 AIVCAGYNASRDVVTLVKSVLFY--R-RNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSW-IPN--K 77 (280)
T ss_pred EEEEccCCcHHHHHHHHHHHHHc--C-CCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhcc-Ccc--c
Confidence 45555555467799999999984 2 3557889988887665433 3323211 112211111 11000 011 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
.|......+|..+..+|.. .+++||.|+-|+++--|--+-++... .+ .+..++++.
T Consensus 78 ~~s~~y~y~RL~ip~llp~-~~dkvLYLD~Diiv~~di~eL~~~~~-~~-~~~~~~a~v 133 (280)
T cd06431 78 HYSGIYGLMKLVLTEALPS-DLEKVIVLDTDITFATDIAELWKIFH-KF-TGQQVLGLV 133 (280)
T ss_pred chhhHHHHHHHHHHHhchh-hcCEEEEEcCCEEEcCCHHHHHHHhh-hc-CCCcEEEEe
Confidence 1212224567788888863 38999999999999887666555411 11 244566664
No 85
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=56.78 E-value=1.3e+02 Score=31.06 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=68.9
Q ss_pred EEEecCc--hHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHH----HHhhcCCcceeeeccccccCCCCCCChhHH
Q 012912 118 VIMACNR--ANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKS----KALSYDKLTYMQHLDFEPVHADNPGELTAY 191 (453)
Q Consensus 118 lI~a~NR--P~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~----vi~s~~~~~~i~~~~~~~in~~~~~~~~~y 191 (453)
|+++++. ..++.-++.||+.. ++ ...+.++|..|+-..+..+ .+.+++.-..+..++.+... ..+. ...
T Consensus 28 Iv~~~D~ny~~~~~vsi~Sil~n-n~-~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~-~~~~--~~~ 102 (334)
T PRK15171 28 IAYGIDKNFLFGCGVSIASVLLN-NP-DKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLK-SLPS--TKN 102 (334)
T ss_pred EEEECcHhhHHHHHHHHHHHHHh-CC-CCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHh-CCcc--cCc
Confidence 3555554 47788999999874 33 2357899998987766544 33444321111122111000 0000 011
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
...+.-||..+..+|.. .+++||.|+-|+++--|.=+.++.- + .+..+.++.
T Consensus 103 ~s~atY~Rl~ip~llp~-~~dkvLYLD~Diiv~~dl~~L~~~d---l-~~~~~aav~ 154 (334)
T PRK15171 103 WTYATYFRFIIADYFID-KTDKVLYLDADIACKGSIKELIDLD---F-AENEIAAVV 154 (334)
T ss_pred CCHHHHHHHHHHHhhhh-hcCEEEEeeCCEEecCCHHHHHhcc---C-CCCeEEEEE
Confidence 12444456677888853 3899999999999988877766431 1 224466664
No 86
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=54.93 E-value=2.3e+02 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.7
Q ss_pred hhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 70 QQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
......+++++++++.+|..+++....++
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666666666666555543
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.14 E-value=1.1e+02 Score=31.07 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 54 NHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
..-..++.+|-.||+.-+.++..++++.....+++.+++.-|..+++
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888888888888888888877777655
No 88
>PRK11637 AmiB activator; Provisional
Probab=53.08 E-value=1e+02 Score=32.86 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 58 NQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+++..+..+|+.-+.+|.+++.+.+..+++..+++..+.+++
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555444444444443
No 89
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.29 E-value=74 Score=25.68 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=8.9
Q ss_pred HhhhhhhHhHHHHhhhhhHHhH
Q 012912 68 SMQQGRIVALEDEKKRRDEECG 89 (453)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~ 89 (453)
+..+.++..++.+..++..+..
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 90
>PLN02523 galacturonosyltransferase
Probab=51.27 E-value=4e+02 Score=29.93 Aligned_cols=113 Identities=18% Similarity=0.290 Sum_probs=69.1
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHH---HhhcCCcc-eeeecc----cc----cc
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSK---ALSYDKLT-YMQHLD----FE----PV 180 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~v---i~s~~~~~-~i~~~~----~~----~i 180 (453)
...+++|++=|=+- ..-++.|+...-. .+.++.++|..|+-.-.-.+. ...+.... .++.++ .. ++
T Consensus 247 ~l~Hy~ifSdNvlA-AsVvInStv~Ns~-~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~pv 324 (559)
T PLN02523 247 SLYHYAIFSDNVIA-ASVVVNSAVKNAK-EPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVPV 324 (559)
T ss_pred CcceEEEecCcchh-hhhhHHHHHHccC-CCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcccccchH
Confidence 45788999999554 8999999988422 356677788878765422111 11111100 111111 00 00
Q ss_pred ----------------CC----CCCCCh----hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHH
Q 012912 181 ----------------HA----DNPGEL----TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFD 229 (453)
Q Consensus 181 ----------------n~----~~~~~~----~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~ 229 (453)
+. ....++ ..|..++-|+++-|-.+|.+ .++||.|+||+++--|-=+
T Consensus 325 lk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~--ldKVLYLD~DVVVq~DLse 395 (559)
T PLN02523 325 LRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPK--LHRILFLDDDVVVQKDLTG 395 (559)
T ss_pred HHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhcc--cCeEEEEeCCEEecCCHHH
Confidence 00 000011 15677899999999999985 8999999999999877544
No 91
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=51.13 E-value=25 Score=34.32 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=39.5
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 012912 10 MAIPICDIRWLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAE 53 (453)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (453)
|++...=.|++.+.++++|.++=.-+|..+.+.+.|+...+|.|
T Consensus 102 l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEee 145 (207)
T PF01786_consen 102 LGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEE 145 (207)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 44566778999999999999999999999999999999999988
No 92
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=50.81 E-value=22 Score=32.60 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=34.7
Q ss_pred EEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC
Q 012912 118 VIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD 167 (453)
Q Consensus 118 lI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~ 167 (453)
-+.++.||- +...|+.|.+. ++|+|+..|+..-++.+++.++
T Consensus 38 ~~~v~~RPg-l~eFL~~l~~~-------yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 38 PVYVFKRPH-VDEFLERVSKW-------YELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred EEEEEECCC-HHHHHHHHHhc-------CEEEEEcCCcHHHHHHHHHHHC
Confidence 467899999 89999998762 4899999999887788887765
No 93
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=50.78 E-value=45 Score=29.89 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhh
Q 012912 26 VAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKK 82 (453)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (453)
+..|++|++.+.+|.+ +..|-.+||.|.-+...|+.+-+
T Consensus 53 i~ii~~q~~~yqvq~e------------------i~~Le~kIs~q~~e~~dlkqeV~ 91 (120)
T COG4839 53 ISIISVQTKAYQVQGE------------------ITDLESKISEQKTENDDLKQEVK 91 (120)
T ss_pred HHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHhhhhhHHHHHH
Confidence 3446778888877754 56677788888777666655443
No 94
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=49.12 E-value=20 Score=32.59 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=62.9
Q ss_pred EEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCC-CCCccc---CC-------------CceeeecCCCccccc
Q 012912 214 VIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDN-GQKQFV---HD-------------PYVLYRSDFFPGLGW 276 (453)
Q Consensus 214 vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdn-g~~~~v---~d-------------~~~lyRsdffpgwGW 276 (453)
|+++++|..+.||++..+.. .++ ||.+..+.+-.-. +..+.. .+ ...+....+++|=|-
T Consensus 2 v~~~DaDt~~~~d~l~~~~~---~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 77 (193)
T PF13632_consen 2 VLFLDADTRLPPDFLERLVA---ALE-DPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGM 77 (193)
T ss_pred EEEEcCCCCCChHHHHHHHH---HHh-CCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcce
Confidence 78999999999999996655 455 6777666543221 111100 00 011223345678888
Q ss_pred ccchhhhhhhCCCCC--ccch-HHHHHHHHhhcCCceee-cCCcceeccCCCCCChhHhHHh
Q 012912 277 MLTRTTWDELSPKWP--KAYW-DDWLRLKENHKGRQFIR-PEVCRTYNFGEHGSSLGQFFQQ 334 (453)
Q Consensus 277 alwr~~W~el~p~WP--~~~W-DdWlR~~~~rkgr~cI~-PevSRt~niG~~G~s~~~~f~~ 334 (453)
+..++..+++. .|+ ...- |..+.....++|..+.+ |+. ++.+-. ..+...++.+
T Consensus 78 ~~r~~~l~~vg-~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~-~~~~~~--p~t~~~~~~Q 135 (193)
T PF13632_consen 78 LFRREALREVG-GFDDPFSIGEDMDLGFRLRRAGYRIVYVPDA-IVYTEA--PPTFRAFIRQ 135 (193)
T ss_pred eeeHHHHHHhC-cccccccccchHHHHHHHHHCCCEEEEeccc-ceeeeC--CCCHHHHHHH
Confidence 88888888875 343 2211 22233334677777765 554 444432 3345555554
No 95
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=48.50 E-value=64 Score=30.07 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=43.1
Q ss_pred HHHHHhhhcC-CcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCC-----CCcccCCCceeeec----CC
Q 012912 201 ALDNLFYKHN-FSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNG-----QKQFVHDPYVLYRS----DF 270 (453)
Q Consensus 201 aLs~vF~~~~-~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng-----~~~~v~d~~~lyRs----df 270 (453)
++.|+.+..+ .+.++.++||+.+-++=+.-.-.....-.....++|-...+... .++.+ +...|.. .|
T Consensus 70 ~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v--~~~~y~~~~yP~y 147 (195)
T PF01762_consen 70 GLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYV--SEEEYPDDYYPPY 147 (195)
T ss_pred HHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCcee--eeeecccccCCCc
Confidence 4444443332 78999999999998764432211111123344444444433211 12222 2222322 23
Q ss_pred Ccccccccchhhhhhh
Q 012912 271 FPGLGWMLTRTTWDEL 286 (453)
Q Consensus 271 fpgwGWalwr~~W~el 286 (453)
..|.|+.+++++=+.|
T Consensus 148 ~~G~~yvls~~~v~~i 163 (195)
T PF01762_consen 148 CSGGGYVLSSDVVKRI 163 (195)
T ss_pred CCCCeEEecHHHHHHH
Confidence 4588999998876654
No 96
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=46.61 E-value=1e+02 Score=33.36 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=63.9
Q ss_pred EEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHh-hcCCcceeeecc-ccccCCCCCCChhHHHHHHH
Q 012912 119 IMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKAL-SYDKLTYMQHLD-FEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 119 I~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~-s~~~~~~i~~~~-~~~in~~~~~~~~~y~~Iar 196 (453)
|=--.||+-..|++..+-.. + =...++=+.||..-++.++-. .++-+-.-+.+- .++.. .|++. ..-.
T Consensus 297 InLkRR~eRreRM~r~fde~-g---Ie~~~veAvDgk~lnt~~~~~lgv~~LpGY~DPys~Rplt---~GEiG---CFLS 366 (568)
T KOG4179|consen 297 INLKRRPERRERMLRIFDEL-G---IEYSLVEAVDGKKLNTSQLEALGVQMLPGYRDPYSGRPLT---KGEIG---CFLS 366 (568)
T ss_pred EecccChHHHHHHHHHHHHh-c---ceEEEEecccccccchhHHHhcCceecCCccCcccCCccc---Cccee---eehh
Confidence 33456899999999888764 2 134688888998665544322 121000001110 01111 12222 1234
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcC
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDK 240 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~ 240 (453)
||+ .-..|.+. +.++++|+|||+-..++|..-...+++-.+.
T Consensus 367 HY~-iW~evV~r-~l~kvlvfEDD~RFe~~f~~rl~~lm~d~~~ 408 (568)
T KOG4179|consen 367 HYN-IWKEVVDR-GLEKVLVFEDDLRFEHDFRTRLMRLMQDVDA 408 (568)
T ss_pred HHH-HHHHHHHh-ccceEEEecccccccHHHHHHHHHHHHHHHh
Confidence 664 22344443 6899999999999999999987777765554
No 97
>PLN02458 transferase, transferring glycosyl groups
Probab=46.36 E-value=2.3e+02 Score=29.82 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=63.9
Q ss_pred eeEEEEecC-ch---HHHHHHHHHHHhccCCCCCCccEEEeeCCCC-hhHHHHHhhcCCcceeeeccccccCCCCCCChh
Q 012912 115 AAVVIMACN-RA---NYLERTINSVFKYQGSVASKYPLFVSQDGSN-PQVKSKALSYDKLTYMQHLDFEPVHADNPGELT 189 (453)
Q Consensus 115 ~PIlI~a~N-RP---~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~-~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~ 189 (453)
+=||-.||. || -+|.|+-..|+.+.++ ..=||.-|+.. ++|.++++.. ++.+. |+..+. +...+..
T Consensus 114 IivVTPTY~rR~~Q~a~LTRLahTL~lVp~p----L~WIVVEd~~~t~~va~lLrrs-Gl~y~-HL~~k~-~~~~~~~-- 184 (346)
T PLN02458 114 VIIVTPISTKDRYQGVLLRRLANTLRLVPPP----LLWIVVEGQSDSEEVSEMLRKT-GIMYR-HLVFKE-NFTDPEA-- 184 (346)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHhcCCCC----ceEEEEeCCCCCHHHHHHHHHc-CCceE-EeccCC-CCCCccc--
Confidence 445567897 54 3588999999998643 23455556553 3577777765 34443 443322 2211111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHH
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEA 233 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~ 233 (453)
+.....+-||.++=++...+=|.|-+||..-+-++|+-|.+
T Consensus 185 ---r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ 225 (346)
T PLN02458 185 ---ELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRD 225 (346)
T ss_pred ---hhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhc
Confidence 11223456999986654457788999999988888876443
No 98
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=45.67 E-value=9.5 Score=39.75 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=46.5
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCC--CCCCChhHH
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHA--DNPGELTAY 191 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~--~~~~~~~~y 191 (453)
-+=|+|.|-..++ +|++-+. .-+.++++|.+|+...+...+-+-++...+= .++++- +...+.+.|
T Consensus 12 evdIVi~TI~~~~----fL~~~r~----~l~~~h~iiV~d~D~~~~~~~~~G~d~~vy~----r~d~~~~Lg~~~~~Ip~ 79 (346)
T PLN03180 12 ELDIVIPTIRNLD----FLEMWRP----FFQPYHLIIVQDGDPSKEIKVPEGFDYELYN----RNDINRILGPKASCISF 79 (346)
T ss_pred cceEEEeccCchh----HHHHHHH----hcCcccEEEEecCCcccceeccCCCceeecC----HHHHHhhhccccccccc
Confidence 3457777754443 4444443 1345689999998876554433334322110 001110 000001111
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChh
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPD 226 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPD 226 (453)
...|+ ..+..+... .+++|.++|||.++.|
T Consensus 80 ~~~a~---R~fGyL~s~--~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 80 KDSAC---RCFGYLVSK--KKYIFTIDDDCFVAKD 109 (346)
T ss_pred Ccccc---hhhhheeec--ceEEEEECCCCCCCCC
Confidence 11111 111122222 6889999999999998
No 99
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.81 E-value=56 Score=28.60 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 56 CTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
-..++..|.++|..=...++.|.+++.++.-|..+++..+..++.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346688888888888888888888899998888888888887765
No 100
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=43.84 E-value=2.7e+02 Score=28.57 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHhcccccccCCCCCceeeEEEEe--cCchHHHHHHHHHHHhc
Q 012912 77 LEDEKKRRDEECGQLKALVKDLERRGLERLVDKVQVPVAAVVIMA--CNRANYLERTINSVFKY 138 (453)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~PIlI~a--~NRP~~l~R~LesL~k~ 138 (453)
|+.+.+..+.+.....+.++.+ .+.++. ..-.-.+|+|++ -...+....+-+.|.++
T Consensus 51 l~~~~~~~~~~~~~~d~f~~~~----~~~lv~-g~L~g~~V~vV~~p~a~~~~~~~v~~~L~~A 109 (308)
T PF11382_consen 51 LRAELDALQAQLNAADQFIAAV----APRLVA-GRLTGRSVAVVTLPGADDEDVDAVRELLEQA 109 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhc-CccCCCEEEEEEcCCCChHHHHHHHHHHHHC
Confidence 4444444444444444444444 333332 122224566666 77777788888888875
No 101
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=41.72 E-value=2.8e+02 Score=27.50 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=64.8
Q ss_pred eEEEEecCchH---HHHHHHHHHHhccCCCCCCccEEEeeCCC--ChhHHHHHhhcCCcceeeeccccccCCCCCCChhH
Q 012912 116 AVVIMACNRAN---YLERTINSVFKYQGSVASKYPLFVSQDGS--NPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 116 PIlI~a~NRP~---~l~R~LesL~k~~~~~~~~~~LiVsqDG~--~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~ 190 (453)
=||=+||.||. +|.|+-..|+.+.| ..=||.-|+. .++|.++++.-. +.+. |+..+. +. .+.....
T Consensus 4 ~vVTPTy~R~~Q~~~LtRLa~TL~lVp~-----l~WIVVEd~~~~t~~va~lL~~sg-l~y~-HL~~~~-~~-~~~~~~~ 74 (223)
T cd00218 4 YVVTPTYARPVQKAELTRLAHTLRLVPP-----LHWIVVEDSEEKTPLVAELLRRSG-LMYT-HLNAKT-PS-DPTWLKP 74 (223)
T ss_pred EEECCCCccchhhHHHHHHHHHHhcCCc-----eEEEEEeCCCCCCHHHHHHHHHcC-CceE-EeccCC-CC-CcccCCc
Confidence 34556899884 58888889988753 2556777877 236777777653 4443 332221 10 0000100
Q ss_pred HHHHHHHHHHHHHHHhhh---cCCcEEEEEccCceeChhHHHHHHHH
Q 012912 191 YYKIARHYKWALDNLFYK---HNFSRVIILEDDMEIAPDFFDYFEAA 234 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~---~~~~~vIILEDDl~~SPDFf~Yf~~~ 234 (453)
+-....+-||.++=++ ...+=|.|-+||..-|-.+|+=|.+.
T Consensus 75 --rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i 119 (223)
T cd00218 75 --RGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKI 119 (223)
T ss_pred --ccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhcc
Confidence 1112234599998765 23467889999999888888765543
No 102
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=41.58 E-value=1.2e+02 Score=26.67 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 14 ICDIRWLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
.|-.|++-++.+++-.++|...+ +....+. .....+.+|++++.+++.+.++...+++
T Consensus 21 ~~~~~~l~~~l~~~l~~f~~~~~-----~g~~~~~-----------------~~~~l~~qi~~~~~e~~~L~~~~~~l~~ 78 (117)
T COG2919 21 VRRRRILTLVLLALLALFQYLAW-----FGKNGAA-----------------DVLQLQRQIAAQQAELEKLSARNTALEA 78 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666667776552 2222111 1122222334666666677777777777
Q ss_pred HHHHHHh
Q 012912 94 LVKDLER 100 (453)
Q Consensus 94 ~~~~~~~ 100 (453)
.+.+|+.
T Consensus 79 ei~~L~d 85 (117)
T COG2919 79 EIKDLKD 85 (117)
T ss_pred HHHHhcc
Confidence 7776644
No 103
>PLN02718 Probable galacturonosyltransferase
Probab=40.46 E-value=4.4e+02 Score=29.89 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=67.4
Q ss_pred eeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC--ccee--eecc-ccccCCC------
Q 012912 115 AAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK--LTYM--QHLD-FEPVHAD------ 183 (453)
Q Consensus 115 ~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~--~~~i--~~~~-~~~in~~------ 183 (453)
.=|++++=|- -++.=++.|++..-+ .+..+.++|..|+-..+..+....... -+.| ..++ +...+..
T Consensus 314 ~Hia~~sDNv-laasVvInSil~Ns~-np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk 391 (603)
T PLN02718 314 YHYVVFSDNV-LACSVVVNSTISSSK-EPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLM 391 (603)
T ss_pred eeEEEEcCCc-eeEEEEhhhhhhccC-CCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhh
Confidence 3456666664 467888999887411 235688889889877654432222211 1112 2221 1111100
Q ss_pred -CCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHH
Q 012912 184 -NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFE 232 (453)
Q Consensus 184 -~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~ 232 (453)
.+..-..|..++.|+++-+..+|.. .+++|+|++|+++--|--+.++
T Consensus 392 ~l~s~~~~~~S~~~y~Rl~ipellp~--l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 392 KQNSHDPRYISALNHARFYLPDIFPG--LNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred hccccccccccHHHHHHHHHHHHhcc--cCEEEEEECCEEecCCHHHHhc
Confidence 0001113556888999999999974 8999999999999887655443
No 104
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.32 E-value=2.6e+02 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.109 Sum_probs=16.5
Q ss_pred hhhhhHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 70 QQGRIVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
-+.+|.+|+.+.+.++..+.+++..+.+.+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666555555555443
No 105
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.32 E-value=1.4e+02 Score=26.19 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=23.8
Q ss_pred HHhhhhhhHHH----HHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 49 AVEAENHCTNQ----MRLLIDQISMQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 49 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
++|+--||... +..+.+.+...+.++..|+.+.+.+++++..++.
T Consensus 67 ~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566333 4445555555555555555555555555554443
No 106
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.21 E-value=1e+02 Score=25.12 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
..++..++|.|..=+.++..|++++..+.++..+++...+.|+
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777776666666666665555553
No 107
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.89 E-value=1.8e+02 Score=25.15 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhhhHhHHHHhhhh--hHHhHHHHHHHHHH
Q 012912 60 MRLLIDQISMQQGRIVALEDEKKRR--DEECGQLKALVKDL 98 (453)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 98 (453)
+..+.+.++....|+.++|.+.+.+ .++..+++-.+.++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el 77 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAEL 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3345555566666666666666665 44555555555444
No 108
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.61 E-value=1.4e+02 Score=25.10 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 40 SEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
..+..||-.|+++-+.-..+...-.+..+.-+.+|..|.....++++++.+...-...||.
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 3466788888888777766666666666777777888888888888888777777777765
No 109
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=38.51 E-value=2.7e+02 Score=28.80 Aligned_cols=121 Identities=12% Similarity=0.207 Sum_probs=69.0
Q ss_pred EEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCC-CChhHHHHHhhcC-----Ccc-eeeeccccccCCCCCCChhH
Q 012912 118 VIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDG-SNPQVKSKALSYD-----KLT-YMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 118 lI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG-~~~et~~vi~s~~-----~~~-~i~~~~~~~in~~~~~~~~~ 190 (453)
+|.+-+|.+.+..+|.|++... .....++|..|. ..++..+.++++. .+. .+..+.. ......+...
T Consensus 5 vv~~g~~~~~~~~~lkSil~~n---~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~---P~~~~~~ws~ 78 (304)
T cd06430 5 VVACGERLEETLTMLKSAIVFS---QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITF---PSGNAAEWKK 78 (304)
T ss_pred EEEcCCcHHHHHHHHHHHHHhC---CCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEec---Cccchhhhhh
Confidence 5566677788888888887742 356788888887 5666555555541 111 1211111 1111111111
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
..+-+.-||.-+..++.. .+++|.|+=|+++--|-=+.++. +.-+. +..+.++.
T Consensus 79 l~~~~~y~RL~ip~lLp~--~dkvLYLD~Dii~~~dI~eL~~~-~~df~-~~~~aA~v 132 (304)
T cd06430 79 LFKPCAAQRLFLPSLLPD--VDSLLYVDTDILFLRPVEEIWSF-LKKFN-STQLAAMA 132 (304)
T ss_pred cccHHHHHHHHHHHHhhh--hceEEEeccceeecCCHHHHHHH-HhhcC-CCeEEEEE
Confidence 111233456677778863 79999999999998887666653 22222 33466654
No 110
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.50 E-value=2e+02 Score=28.56 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=22.3
Q ss_pred HHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 66 QISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.....+.+...|++++..++.+..++..+.++.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en 102 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAEN 102 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666788888888888877666555544
No 111
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.22 E-value=85 Score=27.71 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
..++..+.++++.=...++.|.+++.++.-|..+++..++.+
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777888888888888888888777766
No 112
>PRK11637 AmiB activator; Provisional
Probab=36.87 E-value=2e+02 Score=30.61 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHH
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALV 95 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (453)
..++..+-.+|...+.+|.+++.+.+..+.+..+++..+
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333
No 113
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=36.72 E-value=3.8e+02 Score=26.70 Aligned_cols=41 Identities=27% Similarity=0.555 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHH
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEA 233 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~ 233 (453)
+...+.++|.-+..+|.. .+++|.|+.|+++--|-=+.++.
T Consensus 96 ~~s~~~y~Rl~ip~llp~--~~kvlYLD~Dviv~~dl~eL~~~ 136 (257)
T cd06429 96 YISLLNFARFYLPELFPK--LEKVIYLDDDVVVQKDLTELWNT 136 (257)
T ss_pred ccCHHHHHHHHHHHHhhh--hCeEEEEeCCEEEeCCHHHHhhC
Confidence 345677888899999874 79999999999998876655443
No 114
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.97 E-value=1.3e+02 Score=33.22 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=46.1
Q ss_pred HHHhhhhhhhhHHHHHHHHh----hhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHH
Q 012912 32 QMRLFATQSEYADRVAAAVE----AENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKD 97 (453)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
|+-+--+=.+|+||++..++ .+..|......+..+....+..+..++-+++.+-+++.+++..++.
T Consensus 423 ~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 423 HLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455789999998765 4555555566666666667777777888888888888888777765
No 115
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=35.94 E-value=2.4e+02 Score=27.91 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEE--EccCceeChhHHHHHHHHHHhh
Q 012912 211 FSRVII--LEDDMEIAPDFFDYFEAAADLL 238 (453)
Q Consensus 211 ~~~vII--LEDDl~~SPDFf~Yf~~~l~ly 238 (453)
.+.++. ||||.-+++||.+-+.+....+
T Consensus 113 ~~~~~~~RLDdDDAl~~dFV~rlr~~a~~~ 142 (234)
T PF11316_consen 113 ADPVLQFRLDDDDALHRDFVARLRRAAADL 142 (234)
T ss_pred CCEEEEEEECCcchhhHHHHHHHHHHHHhc
Confidence 444544 5999999999999888876544
No 116
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=35.72 E-value=1.6e+02 Score=23.96 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHH
Q 012912 25 AVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLI 64 (453)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (453)
|+.|+|+ ||-+.-.=..|-..+-++|+.+...+..+-
T Consensus 16 A~LFv~L---l~yvlK~~~~re~~~~~RE~kyq~~I~~lt 52 (71)
T PF10960_consen 16 AVLFVWL---LFYVLKENKKREEKQEEREEKYQEQIEKLT 52 (71)
T ss_pred HHHHHHH---HHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445554 444445555566667788876655554443
No 117
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=35.52 E-value=1.7e+02 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 60 MRLLIDQISMQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
.+.+..+++..+.++.+|+++.+++.-|...+++
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5556666666667777777777777666665543
No 118
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=34.86 E-value=3e+02 Score=23.79 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhh
Q 012912 19 WLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAENH 55 (453)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (453)
.+++++.+++++.|..-...-+.=....+..+..-..
T Consensus 10 ~~lvl~L~~~l~~qs~~i~~L~a~n~~q~~tI~qq~~ 46 (110)
T PF10828_consen 10 AVLVLGLGGWLWYQSQRIDRLRAENKAQAQTIQQQED 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668888899999887766555555566666654433
No 119
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=34.49 E-value=1.4e+02 Score=29.89 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=69.2
Q ss_pred EEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChh-HHHHHhhcC-CcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 119 IMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQ-VKSKALSYD-KLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 119 I~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~e-t~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
|=.-+|+= +.|++++|.++.. .+++|..-|-+.+ +.+.+..++ ...-+.+...+..|++. ++--
T Consensus 26 vev~gr~i-i~~~i~~L~~~gi-----~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~--Sl~~------ 91 (239)
T COG1213 26 VEVGGREI-IYRTIENLAKAGI-----TEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTNTGY--SLLL------ 91 (239)
T ss_pred hhcCCeEe-HHHHHHHHHHcCC-----ceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcccCCcee--EEee------
Confidence 33446766 8999999999632 3678877777765 456666665 34444444444434321 1111
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCC
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQ 255 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~ 255 (453)
|.+.+ -+.+|++--|.+..|+|++.+-.+- .+.+.++..|-..+.
T Consensus 92 ----akd~~-----~~~fii~~sD~vye~~~~e~l~~a~-----~~~li~d~~~~~~~~ 136 (239)
T COG1213 92 ----AKDYM-----DGRFILVMSDHVYEPSILERLLEAP-----GEGLIVDRRPRYVGV 136 (239)
T ss_pred ----ehhhh-----cCcEEEEeCCEeecHHHHHHHHhCc-----CCcEEEecccccccc
Confidence 33222 3569999999999999999765432 678888887765543
No 120
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=34.47 E-value=1.3e+02 Score=27.70 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 39 QSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
++.|+.-+|+.+ -.|.+++-.|||++-...+...+--++.++++.+.......++++
T Consensus 54 ~~~~~~~laa~i---~~~akqId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~ 110 (139)
T KOG1510|consen 54 FEEYAQLLAADI---AKKAKQIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEEL 110 (139)
T ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776 468999999999987655554322222555555554444444443
No 121
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=32.53 E-value=2e+02 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhh-----hhhhHHHHHHH
Q 012912 41 EYADRVAAAVEA-----ENHCTNQMRLL 63 (453)
Q Consensus 41 ~~~~~~~~~~~~-----~~~~~~~~~~~ 63 (453)
+|++.++..+.. =.+|.+|++..
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqe 106 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQE 106 (171)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 466665554432 24676665544
No 122
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.45 E-value=2.6e+02 Score=25.95 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 19 WLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
++++++.+..+.+..|+=..+.+| -......+. +.|.+.|.....++.+++++.+..++++.+++.
T Consensus 9 ~l~iilli~~~~~~~kl~kl~r~Y----~~lm~g~~~-----~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (151)
T PF14584_consen 9 VLVIILLILIIILNIKLRKLKRRY----DALMRGKDG-----KNLEDLLNELFDQIDELKEELEELEKRIEELEE 74 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566663333333 222222211 133444444444444455544444444444433
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.44 E-value=80 Score=34.50 Aligned_cols=81 Identities=15% Similarity=0.305 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh--h-hhh---------hHHHHHHHHhhh-hhhHHHHHHHHHHHHhhhhhhHhHHHHhhh
Q 012912 17 IRWLLLAAAVAFIFIQMRLFA--T-QSE---------YADRVAAAVEAE-NHCTNQMRLLIDQISMQQGRIVALEDEKKR 83 (453)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~--~-~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
+.+|+++.+++-++|=|.+|. . ++. =.+. ++|.+.| .+-..-+|.|+-++..-..++..|+.+++.
T Consensus 6 lk~L~~~v~~~~~~i~ik~~~~~~~~~~~~~~~~~~ltpee-~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~ 84 (472)
T TIGR03752 6 LKVLVIPVILVVVLIGIKSFSGSGSPEPTSDTALAELSPEE-LKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEA 84 (472)
T ss_pred ceehHHHHHHHHHHhheeecCCCCCCCCCcccccccCCcch-hHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777788885 2 111 0011 1122222 123455888888888888888888888888
Q ss_pred hhHHhHHHHHHHHHH
Q 012912 84 RDEECGQLKALVKDL 98 (453)
Q Consensus 84 ~~~~~~~~~~~~~~~ 98 (453)
+.+|.++|++..+++
T Consensus 85 l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 85 LKAENERLQKREQSI 99 (472)
T ss_pred HHHHHHHHHHhhhhH
Confidence 888888887655544
No 124
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.84 E-value=3.9e+02 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=16.5
Q ss_pred HhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 68 SMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
...+..+.+++.+.+.+++...++.+-+..+
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 89 KQQQEQLQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666655555555555555444
No 125
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.15 E-value=91 Score=34.45 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 54 NHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
+-|.+++|.+=+|++.-+..|..+-+++.++.++...+-+.+-|+.+|
T Consensus 201 ~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 201 GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 368999999999999999999999999999999999999999888665
No 126
>PF07573 AreA_N: Nitrogen regulatory protein AreA N terminus; InterPro: IPR011420 The AreA nitrogen regulatory proteins (which are GATA type transcription factors) share a highly conserved N terminus and have IPR000679 from INTERPRO at the C terminus.; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0042128 nitrate assimilation, 0005634 nucleus
Probab=30.56 E-value=25 Score=29.34 Aligned_cols=16 Identities=38% Similarity=1.043 Sum_probs=13.5
Q ss_pred CcccccCCCCCCCccc
Q 012912 409 GIFNEWKDGIPRTAYK 424 (453)
Q Consensus 409 ~~~~d~k~gvpR~~Y~ 424 (453)
.|+.+|+.|.||++..
T Consensus 69 slFPEW~~gaPR~gvd 84 (88)
T PF07573_consen 69 SLFPEWRNGAPRPGVD 84 (88)
T ss_pred ccccccccCCCCCCCC
Confidence 3899999999998654
No 127
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.15 E-value=1.2e+02 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=23.0
Q ss_pred hhhhhhhHHHHHHHH--hhhhhhHHHHHHHHHHHHhhhhhh---------HhHHHHhhhhhHHhHHHHH
Q 012912 36 FATQSEYADRVAAAV--EAENHCTNQMRLLIDQISMQQGRI---------VALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 93 (453)
.++..++..++...+ .....-.++++..++++..++..| .-|+.+.+..++|.++++.
T Consensus 19 ~~~i~~~~~~l~~~~~~~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 19 KSYIDNWLWRLYLKLPSSKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665332 233334566777777777666654 3345555555555544443
No 128
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=27.70 E-value=1.1e+02 Score=27.64 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHH--HHHHHhhhhhhHHHHHHHHH
Q 012912 22 LAAAVAFIFIQMRLFATQSEYADR--VAAAVEAENHCTNQMRLLID 65 (453)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 65 (453)
++|++.|+.+. -+...+.+-... -+.+.+.|..|.+++|.|+.
T Consensus 82 IiA~vvFlivk-~~nk~~~~~~~~~~~~~~~~~~~~ll~eIrdlL~ 126 (128)
T PF01741_consen 82 IIAFVVFLIVK-PINKLKKKEEKEEAEAPAPKTCEELLTEIRDLLK 126 (128)
T ss_dssp HHHHHHHHCHH-HHHHCHHTT-S----H--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhhhhccccCCCCCCchHHHHHHHHHHHh
Confidence 44555555443 233334333332 23345667777777777653
No 129
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.49 E-value=3.1e+02 Score=23.29 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 44 DRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
..+...+..-..-..++.....++......|.++|++...+++-..++-.....||.+
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=27.45 E-value=2.8e+02 Score=30.35 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred ceeeEEEEecCc-hHHHHHHHHHHHhccCCCCCCccEEEeeCCCCh------hHHHHHhhcCC---cceeeeccccccCC
Q 012912 113 PVAAVVIMACNR-ANYLERTINSVFKYQGSVASKYPLFVSQDGSNP------QVKSKALSYDK---LTYMQHLDFEPVHA 182 (453)
Q Consensus 113 p~~PIlI~a~NR-P~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~------et~~vi~s~~~---~~~i~~~~~~~in~ 182 (453)
..+-|||+..+| .+.+.+-|+...+.--...+...|+|...+... ++++.+..+.. ...++.+ +++.
T Consensus 247 ~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i---~~~~ 323 (499)
T PF05679_consen 247 TRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWI---SVKT 323 (499)
T ss_pred CEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEE---EecC
Confidence 346689999999 999999999988862112455566666665521 23345554421 1112211 1111
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhcCCcE-EEEEccCceeChhHHHHHHH
Q 012912 183 DNPGELTAYYKIARHYKWALDNLFYKHNFSR-VIILEDDMEIAPDFFDYFEA 233 (453)
Q Consensus 183 ~~~~~~~~y~~IarHYk~aLs~vF~~~~~~~-vIILEDDl~~SPDFf~Yf~~ 233 (453)
+++.. . + ||+..-..++-+. +.+.+=|+++.+|||+=|..
T Consensus 324 ---~~fsr---~-~----~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~ 364 (499)
T PF05679_consen 324 ---GEFSR---G-A----ALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRM 364 (499)
T ss_pred ---CCccH---H-H----HHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHH
Confidence 22221 1 1 5555544444444 66678899999999998765
No 131
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=27.25 E-value=3.3e+02 Score=21.91 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHHHHHHHH
Q 012912 123 NRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIARHYKWAL 202 (453)
Q Consensus 123 NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~IarHYk~aL 202 (453)
|-...|...|...++. + . ..++|..||+.+.+.++++++..+..+.... + . .. +... ...++..+
T Consensus 2 ne~~~L~~wl~~~~~l-G--~--d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~--~--~--~~---~~~~-~~~~~~~~ 66 (97)
T PF13704_consen 2 NEADYLPEWLAHHLAL-G--V--DHIYIYDDGSTDGTREILRALPGVGIIRWVD--P--Y--RD---ERRQ-RAWRNALI 66 (97)
T ss_pred ChHHHHHHHHHHHHHc-C--C--CEEEEEECCCCccHHHHHHhCCCcEEEEeCC--C--c--cc---hHHH-HHHHHHHH
Confidence 4456677888877664 2 2 2699999999999999999986654443321 1 1 00 0011 11222222
Q ss_pred HHHhhhcCCcEEEEEccCceeChh
Q 012912 203 DNLFYKHNFSRVIILEDDMEIAPD 226 (453)
Q Consensus 203 s~vF~~~~~~~vIILEDDl~~SPD 226 (453)
... .+.+.+++++=|=.+.|.
T Consensus 67 ~~~---~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 67 ERA---FDADWVLFLDADEFLVPP 87 (97)
T ss_pred HhC---CCCCEEEEEeeeEEEecC
Confidence 221 247899999977655443
No 132
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.22 E-value=40 Score=37.00 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=24.1
Q ss_pred HHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 64 IDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
.+++..+| +|.+|++|++.+++++..++..+++.|++
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 34455555 67777777777777766666666666665
No 133
>PLN02867 Probable galacturonosyltransferase
Probab=27.05 E-value=75 Score=35.31 Aligned_cols=38 Identities=18% Similarity=0.470 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHH
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFD 229 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~ 229 (453)
.|..+..|+++.|-.+|.. .++||.||||+++--|.=+
T Consensus 326 kylS~lnYlRflIPeLLP~--LdKVLYLD~DVVVqgDLse 363 (535)
T PLN02867 326 SCLSLLNHLRIYIPELFPD--LNKIVFLDDDVVVQHDLSS 363 (535)
T ss_pred hhhhHHHHHHHHHHHHhhc--cCeEEEecCCEEEcCchHH
Confidence 5778899999999999985 8999999999999887543
No 134
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.04 E-value=2.8e+02 Score=25.17 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHH-------hhhhhhHhHHHHhhhhhHHhHHHHHHHH
Q 012912 55 HCTNQMRLLIDQIS-------MQQGRIVALEDEKKRRDEECGQLKALVK 96 (453)
Q Consensus 55 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (453)
.+.+++..|||.+= .|..+|..|+++++..+++..+.-..-+
T Consensus 80 ~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e 128 (144)
T PF11221_consen 80 RKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAE 128 (144)
T ss_dssp HHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777787762 3555688888888777777654443333
No 135
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=2.7e+02 Score=30.17 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=64.9
Q ss_pred CCCceeeEEEEecCc-hHHHHHHHHHHHhccCCCCCCccEEEeeCCCChh-HH----HHHhhcCCcceeeeccccccCCC
Q 012912 110 VQVPVAAVVIMACNR-ANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQ-VK----SKALSYDKLTYMQHLDFEPVHAD 183 (453)
Q Consensus 110 ~~~p~~PIlI~a~NR-P~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~e-t~----~vi~s~~~~~~i~~~~~~~in~~ 183 (453)
.+.|++.|+|+-.|- -..|-|++-|+++-.|+ .--..|+...|-++++ .+ +.+..|++...+-..+.
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~-~~l~eivlvDDfSdKehLkekLDeYv~~fnGlVkV~Rne~------ 224 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPR-KYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGLVKVFRNER------ 224 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCcH-HhhheEEEeccCCccHHHHHHHHHHHHHhcCEEEEEecch------
Confidence 455777776666664 46788999999984332 2233567777777654 33 45556655333222111
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEE
Q 012912 184 NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAV 247 (453)
Q Consensus 184 ~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~I 247 (453)
..+++....|- |. .. -.+-+|+|+--|++.-.++. -++.-...|.+|+.|
T Consensus 225 -REGLI~aRSiG-----A~-~a----tGeV~ifLDAHCEVntNWlp---PLlAPI~rdRtvmTV 274 (603)
T KOG3737|consen 225 -REGLIQARSIG-----AQ-KA----TGEVLIFLDAHCEVNTNWLP---PLLAPISRDRTVMTV 274 (603)
T ss_pred -hhhhhhhhccc-----hh-hc----cccEEEEEecceeeeccccc---ccccccccCceEEEE
Confidence 11111100010 10 11 14679999999999988776 333334567777754
No 136
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=26.08 E-value=5.5e+02 Score=27.47 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 62 LLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
.|..+++.+...+..+|.+...+++...++++.+.++
T Consensus 89 ~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~l 125 (390)
T PRK10920 89 ELEGILKQQAKALDQANRQQAALAKQLDELQQKVATI 125 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555554
No 137
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=24.87 E-value=2.9e+02 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=15.8
Q ss_pred hhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 73 RIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+...|.++++++.+|..++++.+..+
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~~~ 83 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLKSY 83 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667666666665555443
No 138
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=24.41 E-value=9.2e+02 Score=26.08 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhcc-ccc---ccCCCCCceeeEEEEecCchHHHHHHHHH
Q 012912 59 QMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERRG-LER---LVDKVQVPVAAVVIMACNRANYLERTINS 134 (453)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~p~~PIlI~a~NRP~~l~R~Les 134 (453)
+-+.++.++|.-++.|..|++..-.+|-+....++...-+-.+. +.. ..+....+..=++|.+.-.|.+.+|= ++
T Consensus 79 ~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR-~A 157 (408)
T PLN03193 79 DSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRR-DS 157 (408)
T ss_pred chhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHH-HH
Confidence 45678899999999999999998888888886666444332221 110 01112233344555566666555332 23
Q ss_pred HHhccCCCC---------CCc--cEEEeeCCC-Chh----HHHHHhhcCCcceeeeccccccCCCCCCChhHHHHHHHHH
Q 012912 135 VFKYQGSVA---------SKY--PLFVSQDGS-NPQ----VKSKALSYDKLTYMQHLDFEPVHADNPGELTAYYKIARHY 198 (453)
Q Consensus 135 L~k~~~~~~---------~~~--~LiVsqDG~-~~e----t~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~y~~IarHY 198 (453)
|++.-.+.. ... .-+|...+. .+. +.+..+.|+.+- ..++.+ ...++. .|.-.-+
T Consensus 158 IR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL---~lDfvD----sY~NLT--~KTl~~f 228 (408)
T PLN03193 158 VRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFL---RLDHVE----GYLELS--AKTKTYF 228 (408)
T ss_pred HHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEE---EEeccc----ccccch--HHHHHHH
Confidence 443222100 111 112222221 122 223444554332 222322 111111 1223334
Q ss_pred HHHHHHHhhhcCCcEEEEEccCceeChhHH
Q 012912 199 KWALDNLFYKHNFSRVIILEDDMEIAPDFF 228 (453)
Q Consensus 199 k~aLs~vF~~~~~~~vIILEDDl~~SPDFf 228 (453)
+||.. ..++++++-.+||.-+.++=+
T Consensus 229 ~wA~~----~~dAkF~mK~DDDvfVnv~~L 254 (408)
T PLN03193 229 ATAVA----MWDADFYVKVDDDVHVNIATL 254 (408)
T ss_pred HHHHH----cCCCeEEEEcCCCceEcHHHH
Confidence 45443 234799999999999998754
No 139
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.04 E-value=2e+02 Score=26.29 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 59 QMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
..+.|..|++.....+..|+++.++.+.....-..-++.|
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444333333333
No 140
>PLN02190 cellulose synthase-like protein
Probab=23.72 E-value=1.7e+02 Score=33.90 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=38.5
Q ss_pred ceeeEEEEecC----chHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhH
Q 012912 113 PVAAVVIMACN----RANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQV 159 (453)
Q Consensus 113 p~~PIlI~a~N----RP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et 159 (453)
|.+=|-|-|++ -|..+..++-|+++++.| .++.-+|||+||...-|
T Consensus 93 p~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP-~eklscYvSDDG~s~LT 142 (756)
T PLN02190 93 PSVDMFVPTADPVREPPIIVVNTVLSLLAVNYP-ANKLACYVSDDGCSPLT 142 (756)
T ss_pred CcceEEEecCCCCcCCHHHHHHHHHHHHhccCC-ccccceEEecCCCcHhH
Confidence 44556777887 688999999999999987 68889999999998744
No 141
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.28 E-value=4.3e+02 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhh
Q 012912 25 AVAFIFIQMRLFA 37 (453)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (453)
++.+.++=.|++.
T Consensus 110 ~LfL~l~I~r~~~ 122 (192)
T PF05529_consen 110 ALFLSLVIRRVHS 122 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444445543
No 142
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.05 E-value=3.8e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=22.0
Q ss_pred HHHHHHHhhh-hhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 62 LLIDQISMQQ-GRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.|+++|.... .....|+.+++.++..+.++...++-.+.
T Consensus 61 ~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 61 QLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555433 23455666666666666666666665544
No 143
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.54 E-value=6e+02 Score=23.24 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHH
Q 012912 16 DIRWLLLAAAVAFIFIQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALV 95 (453)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (453)
.+.+.+++++++.++.| +.-...+..-++.. ...+++.-+.+....+.|..|..+.++-++...++....
T Consensus 1 ~~~i~l~~~a~~~~~~~-------~~~~~~l~~~~~~a---~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~ 70 (135)
T TIGR03495 1 RLLIVLLGLLVAGLGWQ-------SQRLRNARADLERA---NRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQL 70 (135)
T ss_pred ChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhc
Q 012912 96 KDLERR 101 (453)
Q Consensus 96 ~~~~~~ 101 (453)
.+....
T Consensus 71 ~~~~~~ 76 (135)
T TIGR03495 71 AQARAL 76 (135)
T ss_pred HHHHHH
No 144
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.46 E-value=3.3e+02 Score=28.55 Aligned_cols=41 Identities=7% Similarity=0.246 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhH
Q 012912 37 ATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVAL 77 (453)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (453)
.|+..|..++...-+..++|.+.+..-...++.-..++..+
T Consensus 18 ethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 18 ETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999877655444444433333333
No 145
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.40 E-value=4.3e+02 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHhHHHH
Q 012912 52 AENHCTNQMRLLIDQISMQQGRIVALEDE 80 (453)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (453)
+|=.|...+..+-+++..-+.+|..|+++
T Consensus 236 A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 236 AELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777654
No 146
>PLN02659 Probable galacturonosyltransferase
Probab=22.31 E-value=81 Score=35.01 Aligned_cols=40 Identities=25% Similarity=0.551 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHH
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYF 231 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf 231 (453)
.|..+..|++.-+-.+|.+ .++||.||||+++--|-=+.+
T Consensus 325 ~ylS~~nY~RL~IPeLLP~--LdKVLYLD~DVVVqgDLseLw 364 (534)
T PLN02659 325 KYNSVMNHIRIHLPELFPS--LNKVVFLDDDIVVQTDLSPLW 364 (534)
T ss_pred cceeHHHHHHHHHHHHhhh--cCeEEEeeCCEEEcCchHHHH
Confidence 4667899999999999985 899999999999987755443
No 147
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.29 E-value=1.4e+02 Score=33.17 Aligned_cols=60 Identities=27% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhh--hhHHhHHHHHHHHHHHhcccccccCCCCCceee
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKR--RDEECGQLKALVKDLERRGLERLVDKVQVPVAA 116 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P 116 (453)
+..-.+|.+|++..+.+|..||.++++ +|.+..+++...+.......+.-+.+...+..+
T Consensus 301 tes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~ 362 (518)
T PF10212_consen 301 TESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESS 362 (518)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
No 148
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.27 E-value=2.5e+02 Score=27.62 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 58 NQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
..+++|+++-. ...++.++|.++.+.+.+.++++.-++.|++.
T Consensus 149 ~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 149 ERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455554322 44557788888888888888888888877664
No 149
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=22.21 E-value=2.2e+02 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 012912 40 SEYADRVAAAVEAENHCTNQMRLLIDQISMQQGR 73 (453)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (453)
-.||+.+...+|.+.+-+++....+..++.+.+.
T Consensus 26 ~~~a~e~v~~aE~~Gg~~~e~~~~~~~l~~k~g~ 59 (116)
T PF14208_consen 26 NTFAQELVRQAEREGGVTSETVDRIEDLSEKTGL 59 (116)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Confidence 4588888889999998888888888777766554
No 150
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=21.90 E-value=1.1e+02 Score=30.09 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhcccccccCCCCCceeeE-
Q 012912 39 QSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERRGLERLVDKVQVPVAAV- 117 (453)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~PI- 117 (453)
|+-|-+.|...++..|.-.. ......+.-|=+=|--..+.-..+...++.+++.+..+..+ ....-||
T Consensus 53 ~~Lyl~pL~~~l~~~n~~~~---------~~~~~~l~LlIDiKt~g~~t~~~l~~~L~~~~~~~~~~~~~--~~~~~pvt 121 (228)
T cd08577 53 ESLYLDPLLEILDQNNGQAY---------NDPEQPLQLLIDIKTDGESTYPALEEVLKPYIDIGYLSYYD--KLVPGPVT 121 (228)
T ss_pred HHHhHHHHHHHHHHcCCCCC---------CCCCCceEEEEEECCCChHHHHHHHHHHHHHHhcCceeecC--cEEecCeE
Confidence 56677777776655533211 12222222221112222233344567777787776665543 2222355
Q ss_pred EEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCCh
Q 012912 118 VIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNP 157 (453)
Q Consensus 118 lI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~ 157 (453)
||++-|||-.+- .. ..+=+++.||+-.
T Consensus 122 vV~tGn~p~~~~------~~-------~~~r~~f~D~~l~ 148 (228)
T cd08577 122 VVITGNRPKEEV------KS-------QYPRYIFFDGRLD 148 (228)
T ss_pred EEEeCCCChhhh------cc-------ccCCeEEEeCChh
Confidence 899999998651 11 1234677799854
No 151
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.67 E-value=1.5e+02 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=13.5
Q ss_pred hhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 73 RIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
++.+++.+++.++++..+++..++.|
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555
No 152
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.44 E-value=4.6e+02 Score=27.11 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=60.6
Q ss_pred ecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc-CCcceeeeccccccCCCCCCChhHHHHHHHHHH
Q 012912 121 ACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY-DKLTYMQHLDFEPVHADNPGELTAYYKIARHYK 199 (453)
Q Consensus 121 a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~-~~~~~i~~~~~~~in~~~~~~~~~y~~IarHYk 199 (453)
+--||..-.|++..+..++--.+++.--+|..||...-- ..|++| +....+--++...-++ +.+ -++--+
T Consensus 13 S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d-~~i~~~i~~~~~~~yl~~~s~~~-----F~s---~~~c~n 83 (346)
T COG4092 13 SEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD-RLIRSYIDPMPRVLYLDFGSPEP-----FAS---ETICAN 83 (346)
T ss_pred hhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH-HHHHHHhccccceEEEecCCCcc-----ccc---hhhhhh
Confidence 446888888999833322222334445566677764322 333443 3222211111111111 100 011122
Q ss_pred HHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcC
Q 012912 200 WALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDK 240 (453)
Q Consensus 200 ~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~ 240 (453)
-|.+..+++..-+.+.+|+=||..|-|=|.-+.......+.
T Consensus 84 ~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~ 124 (346)
T COG4092 84 NGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKM 124 (346)
T ss_pred ccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHH
Confidence 37777777766688999999999998888877766555543
No 153
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=21.13 E-value=2.7e+02 Score=32.49 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=41.3
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHh---------------hhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 37 ATQSEYADRVAAAVEAENHCTNQMRLLIDQISM---------------QQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+-|-+|++-+.+--|-| +++|=|.++|.. +..+|..+|.+.++.|.|..|+++--+.|++
T Consensus 46 afQR~fv~evrRcdeme----Rklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~ 120 (829)
T KOG2189|consen 46 AFQRKFVNEVRRCDEME----RKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKA 120 (829)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34667777666665555 556666666665 2455788999999999998888766655433
No 154
>PLN02829 Probable galacturonosyltransferase
Probab=20.54 E-value=1.1e+02 Score=34.73 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHH
Q 012912 190 AYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYF 231 (453)
Q Consensus 190 ~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf 231 (453)
.|..++-|+++-|-.+|.. .++||.|++|+++--|-=+.+
T Consensus 438 ~ylS~lnY~RfyLPeLLP~--LdKVLYLD~DVVVqgDLseLw 477 (639)
T PLN02829 438 KYLSILNHLRFYLPEIFPK--LNKVLFLDDDIVVQKDLTGLW 477 (639)
T ss_pred chhhHHHHHHHHHHHHhcc--cCeEEEEeCCEEeCCChHHHH
Confidence 4567888999999999985 899999999999987754433
No 155
>PRK12705 hypothetical protein; Provisional
Probab=20.41 E-value=8.5e+02 Score=27.07 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhhhhHhHHHHh
Q 012912 60 MRLLIDQISMQQGRIVALEDEK 81 (453)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~ 81 (453)
++..-..+...+.++.+.|+++
T Consensus 72 ~~~~~~~~~~~e~rl~~~e~~l 93 (508)
T PRK12705 72 ARREREELQREEERLVQKEEQL 93 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
Done!