Query 012912
Match_columns 453
No_of_seqs 250 out of 514
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:38:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fo8_A Alpha-1,3-mannosyl-glyc 100.0 8.1E-88 2.8E-92 685.0 31.6 334 113-451 2-339 (343)
2 1qg8_A Protein (spore coat pol 99.2 4.7E-11 1.6E-15 112.0 12.5 188 113-322 1-216 (255)
3 3bcv_A Putative glycosyltransf 99.1 5.1E-10 1.7E-14 103.8 12.0 111 111-245 3-117 (240)
4 1xhb_A Polypeptide N-acetylgal 98.9 5.3E-09 1.8E-13 108.2 11.8 189 110-322 26-259 (472)
5 2z86_A Chondroitin synthase; G 98.9 2.1E-08 7E-13 107.2 15.3 117 112-250 92-211 (625)
6 2z86_A Chondroitin synthase; G 98.9 8.4E-09 2.9E-13 110.3 12.3 179 111-316 373-568 (625)
7 2ffu_A Ppgalnact-2, polypeptid 98.8 2.5E-08 8.5E-13 104.3 12.2 187 110-321 63-290 (501)
8 2d7i_A Polypeptide N-acetylgal 98.8 4.8E-08 1.6E-12 104.5 14.1 188 110-321 109-338 (570)
9 4fix_A UDP-galactofuranosyl tr 98.7 2.3E-08 7.7E-13 109.3 10.1 192 110-322 177-418 (657)
10 3l7i_A Teichoic acid biosynthe 98.6 4.5E-09 1.5E-13 115.2 0.0 165 112-301 1-187 (729)
11 4hg6_A Cellulose synthase subu 98.5 4.4E-07 1.5E-11 101.1 11.5 179 110-312 137-359 (802)
12 3ckj_A Putative uncharacterize 98.5 8.4E-07 2.9E-11 88.0 11.9 119 111-249 46-168 (329)
13 3f1y_A Mannosyl-3-phosphoglyce 98.2 2.3E-06 7.8E-11 87.8 8.6 121 112-250 93-217 (387)
14 2fy7_A Beta-1,4-galactosyltran 97.7 0.00024 8.1E-09 70.0 11.4 149 111-314 63-221 (287)
15 2nxv_A ATP synthase subunits r 97.3 0.0011 3.6E-08 63.0 10.5 98 112-249 15-114 (249)
16 2bo4_A Mannosylglycerate synth 95.2 0.036 1.2E-06 57.0 7.6 106 117-235 3-118 (397)
17 2wvl_A Mannosyl-3-phosphoglyce 92.9 0.16 5.5E-06 51.9 6.8 126 114-252 54-203 (391)
18 2zu9_A Mannosyl-3-phosphoglyce 76.2 8.6 0.00029 39.5 9.0 47 114-166 52-104 (394)
19 1g9r_A Glycosyl transferase; a 68.4 6.4 0.00022 38.2 5.7 114 123-248 10-129 (311)
20 1omz_A Alpha-1,4-N-acetylhexos 67.5 16 0.00054 36.0 8.3 97 114-231 29-127 (293)
21 3tzt_A Glycosyl transferase fa 62.3 33 0.0011 32.7 9.4 123 115-248 6-134 (276)
22 3nmd_A CGMP dependent protein 60.7 11 0.00037 29.7 4.5 39 62-100 30-68 (72)
23 2d0j_A Galactosylgalactosylxyl 55.5 1.3E+02 0.0043 28.9 11.9 110 112-232 2-122 (246)
24 3mq9_A Bone marrow stromal ant 54.1 37 0.0013 34.5 8.6 59 40-98 407-469 (471)
25 4g1a_A AQ-C16C19 peptide; heli 51.9 6.9 0.00024 25.4 1.7 29 74-102 2-30 (32)
26 1zxa_A CGMP-dependent protein 50.8 15 0.00052 28.5 3.8 42 59-100 12-53 (67)
27 2fxo_A Myosin heavy chain, car 49.3 52 0.0018 28.1 7.5 45 57-101 82-126 (129)
28 1v84_A Galactosylgalactosylxyl 37.8 1.8E+02 0.0062 27.9 10.0 110 112-232 2-128 (253)
29 1ci6_A Transcription factor AT 37.7 1E+02 0.0035 23.1 6.7 39 59-97 24-62 (63)
30 3ra3_A P1C; coiled coil domain 34.9 30 0.001 21.8 2.6 25 74-98 2-26 (28)
31 1lwu_C Fibrinogen gamma chain; 34.6 54 0.0018 32.7 5.9 42 60-101 14-55 (323)
32 3cu0_A Galactosylgalactosylxyl 33.8 3.4E+02 0.012 26.4 11.5 108 110-231 18-153 (281)
33 4fla_A Regulation of nuclear P 32.3 1.6E+02 0.0056 25.9 8.1 63 31-100 80-142 (152)
34 3vmx_A Voltage-gated hydrogen 32.2 1E+02 0.0036 22.3 5.5 40 55-97 4-43 (48)
35 2jee_A YIIU; FTSZ, septum, coi 30.4 1.1E+02 0.0038 24.5 6.0 37 57-93 12-48 (81)
36 2gak_A Beta-1,6-N-acetylglucos 30.4 4.1E+02 0.014 26.5 11.8 101 113-228 84-190 (391)
37 3u0c_A Invasin IPAB, 62 kDa an 30.3 81 0.0028 28.7 5.7 23 13-35 48-70 (201)
38 3ghg_C Fibrinogen gamma chain; 27.4 1.2E+02 0.0039 31.3 7.0 72 31-102 64-135 (411)
39 3s4r_A Vimentin; alpha-helix, 26.3 2.6E+02 0.0087 22.5 7.7 27 73-99 64-90 (93)
40 3hnw_A Uncharacterized protein 25.9 3.2E+02 0.011 23.6 10.4 44 57-100 88-131 (138)
41 1yke_B RNA polymerase II holoe 25.3 1.8E+02 0.0062 25.6 7.1 37 57-93 70-113 (151)
42 1ykh_B RNA polymerase II holoe 25.1 2.1E+02 0.0073 24.5 7.4 36 57-92 70-112 (132)
43 2zvf_A Alanyl-tRNA synthetase; 23.6 2.2E+02 0.0076 24.6 7.5 14 124-137 83-96 (171)
44 1t3j_A Mitofusin 1; coiled coi 23.1 2.9E+02 0.0099 22.7 7.4 57 40-99 35-91 (96)
45 1lwu_C Fibrinogen gamma chain; 22.8 94 0.0032 30.9 5.2 43 59-101 6-48 (323)
46 3mq7_A Bone marrow stromal ant 21.4 3.8E+02 0.013 22.8 9.2 47 54-100 49-99 (121)
47 1fmh_A General control protein 21.3 1.1E+02 0.0038 19.8 3.5 26 74-99 3-28 (33)
No 1
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=100.00 E-value=8.1e-88 Score=685.04 Aligned_cols=334 Identities=41% Similarity=0.831 Sum_probs=290.8
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-CcceeeeccccccC-CCCCCChhH
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-KLTYMQHLDFEPVH-ADNPGELTA 190 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-~~~~i~~~~~~~in-~~~~~~~~~ 190 (453)
+.+||||+|||||+ |++||+||+++++ ..+.++|||++||+.++|+++|++|. .+.+++|.+...+. .....++.+
T Consensus 2 ~~~pViI~~yNRp~-l~~~L~sL~~~~p-~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~ 79 (343)
T 1fo8_A 2 AVIPILVIACDRST-VRRCLDKLLHYRP-SAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQG 79 (343)
T ss_dssp CCCCEEEEESSCTT-HHHHHHHHHHHCS-CTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHH
T ss_pred CcccEEEEECCcHH-HHHHHHHHHhcCC-CcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCccc
Confidence 45899999999999 9999999999875 46778999999999999999999984 34455555433211 112234568
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCccc--CCCceeeec
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQFV--HDPYVLYRS 268 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~v--~d~~~lyRs 268 (453)
|++||+||+||++++|+.++++++|||||||++|||||+||++++++|++|++|+||||||+||....+ .+++.+||+
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~~~~~~~lyrs 159 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRT 159 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSCTTCTTCEEEE
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCccccccccccCcceEEee
Confidence 999999999999999997779999999999999999999999999999999999999999999987654 478899999
Q ss_pred CCCcccccccchhhhhhhCCCCCccchHHHHHHHHhhcCCceeecCCcceeccCCCCCChhHhHHhhhcCCCCCCCcccc
Q 012912 269 DFFPGLGWMLTRTTWDELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFQQYLAPIKLNDVPVDW 348 (453)
Q Consensus 269 dffpgwGWalwr~~W~el~p~WP~~~WDdWlR~~~~rkgr~cI~PevSRt~niG~~G~s~~~~f~~yl~~ikln~~~v~f 348 (453)
+||||||||+||++|++++++||.++||+|+|.+++++|++||+|++|||+|||.+|+|++++|++||++|++|+.+|+|
T Consensus 160 ~~f~~wGWa~wr~~W~e~~~~wp~~~Wd~w~r~~~~~~~r~ci~P~vsrv~n~G~~G~~~~~f~~~~l~~~~~n~~~v~~ 239 (343)
T 1fo8_A 160 DFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRKGRACVRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVPF 239 (343)
T ss_dssp SSCCCSSEEEEHHHHHHHGGGCCSSCHHHHHTSHHHHTTCEEEEESSBSEEECC-------------CTTBCBCCSCCCG
T ss_pred cCCCchhhhhcHHHHHHHhhhcchhHHHHHHHHHHHhCCCEEEEeccceeEeccccCcchhHHHHHHHhhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCccccchhhHHHHHHHHHHhcCccccccccccccCCCCcEEEEeCChhHHHHHHHHcCcccccCCCCCCCccceEEE
Q 012912 349 KSRDLSYLIKDNYEKYFAEIVKKATPVHGENVVLKAHDIEGDVRIEYKDQSHFEIIARQFGIFNEWKDGIPRTAYKGVVV 428 (453)
Q Consensus 349 ~~~dl~yL~~~~Yd~~~~~~v~~a~~i~~~~~~~~~~~~~~~~~i~Y~~~~~~~~~a~~~~~~~d~k~gvpR~~Y~Gvv~ 428 (453)
.++|++||.+++||+.|+++|++|++++.+++..+.....++++|+|+++++|+++|+|||||+|+|+|||||+|+|||+
T Consensus 240 ~~~~~~~l~~~~Y~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~a~~~~i~~d~~~g~~r~~y~gvv~ 319 (343)
T 1fo8_A 240 TQLDLSYLQQEAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSGVPRAGYRGIVT 319 (343)
T ss_dssp GGSCCGGGSHHHHHHHHHHHHHHSCBCCHHHHHTTCCTTCSEEEEECCSHHHHHHHHHHTTCCCCEETTEETTCBTTBEE
T ss_pred cccCHHHHhHHHHHHHHHHHHhhCCcccHHHhhhcccCCCCcEEEEECChHHHHHHHHHhCCcccCcCCccccccceEEE
Confidence 99999999999999999999999999998887654445678999999999999999999999999999999999999999
Q ss_pred EEEcCCCEEEEECCCCccccCcC
Q 012912 429 FRYQTPRRIFLVGPDSLRQLGIK 451 (453)
Q Consensus 429 ~~~~~~~~v~lv~~~s~~~~~~~ 451 (453)
|+++ |+||||||+.+ +.|||
T Consensus 320 ~~~~-~~~~~l~p~~~--~~~y~ 339 (343)
T 1fo8_A 320 FLFR-GRRVHLAPPQT--WDGYD 339 (343)
T ss_dssp EEET-TEEEEEECCTT--CCSCC
T ss_pred EEEC-CEEEEEECCCC--cCcCC
Confidence 9998 89999999965 66776
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.24 E-value=4.7e-11 Score=112.04 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=116.1
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC---Ccceeeecccc----ccCCCCC
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD---KLTYMQHLDFE----PVHADNP 185 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~---~~~~i~~~~~~----~in~~~~ 185 (453)
|.+.|||++||+++++.+||+||+++.. ..++|+|..||+.+++.++++++. .++.++..... +.|.
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~---~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~--- 74 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTF---SDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKT--- 74 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSC---CCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSC---
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccC---CceEEEEEECCCCchHHHHHHHHhhcCCEEEEeccccccccccccc---
Confidence 4578999999999999999999998543 368999999999999999999872 33333221000 0111
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC------CCCCCCcc-
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW------NDNGQKQF- 258 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw------Ndng~~~~- 258 (453)
..+...+.|+.. ...+.+++++||..+.|++++-+...+ +.++.+.+|++. +.++....
T Consensus 75 -------G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~~~~l~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (255)
T 1qg8_A 75 -------RYAALINQAIEM----AEGEYITYATDDNIYMPDRLLKMVREL---DTHPEKAVIYSASKTYHLNENRDIVKE 140 (255)
T ss_dssp -------HHHHHHHHHHHH----CCCSEEEEEETTEEECTTHHHHHHHHH---HHCTTCCEEEEEEEEEEEC---CEEEE
T ss_pred -------CHHHHHHHHHHH----cCCCEEEEeCCCCccChHHHHHHHHHH---HhCCCceEEEeceEEEEeCCCCcchhh
Confidence 133333445544 358999999999999999888665555 445555444443 33222100
Q ss_pred -c--CCCceeeecCCCcccccccchhhhhhhC----CCCC-------ccchHHHHHHHHhhcCCceeecCCcceeccC
Q 012912 259 -V--HDPYVLYRSDFFPGLGWMLTRTTWDELS----PKWP-------KAYWDDWLRLKENHKGRQFIRPEVCRTYNFG 322 (453)
Q Consensus 259 -v--~d~~~lyRsdffpgwGWalwr~~W~el~----p~WP-------~~~WDdWlR~~~~rkgr~cI~PevSRt~niG 322 (453)
. ..........++++.+.+..|+.++++. .-|. ..+||.|+|. ...|+....|+.--.+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~--~~~g~~~~~~~~~~~~r~~ 216 (255)
T 1qg8_A 141 TVRPAAQVTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRV--NHFYPFYPLDEELDLNYIT 216 (255)
T ss_dssp EEECCCSCBSCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHH--TTTCCBEEEEEEEEEEEEC
T ss_pred ccCchHHHHHhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHH--HHhCCEEEecCcEEEEEEc
Confidence 0 0010112234567889999999998743 2232 1256667774 3456655567764444444
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.10 E-value=5.1e-10 Score=103.78 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=80.8
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~~ 186 (453)
.+|.+.|+|++||+++++.+||+||+++.. ..++|+|..||+.+++.++++.+ ..++.++ .+ |.|
T Consensus 3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~q~~---~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~----~~-n~G--- 71 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTL---SDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH----KK-NAG--- 71 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSS---SSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE----CC-CCC---
T ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHhCcC---CCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE----CC-CCC---
Confidence 367899999999999999999999998543 36899999999998888888776 2333332 11 322
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEE
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIM 245 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~ 245 (453)
.+...+.|+.. ...+.+++|++|..+.|++++-+...+... +..+.
T Consensus 72 -------~~~a~N~g~~~----a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~--~~~~v 117 (240)
T 3bcv_A 72 -------LGMACNSGLDV----ATGEYVAFCDSDDYVDSDMYMTMYNVAQKY--TCDAV 117 (240)
T ss_dssp -------HHHHHHHHHHH----CCSSEEEECCTTCCCCTTHHHHHHHHHHHH--TCSEE
T ss_pred -------hHHHHHHHHHH----cCCCEEEEECCCCcCCHHHHHHHHHHHHhc--CCCEE
Confidence 22323335443 357999999999999999999877766542 44454
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.90 E-value=5.3e-09 Score=108.19 Aligned_cols=189 Identities=16% Similarity=0.129 Sum_probs=116.2
Q ss_pred CCCceeeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCCh-hHHHHHhhc----C-CcceeeeccccccCC
Q 012912 110 VQVPVAAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNP-QVKSKALSY----D-KLTYMQHLDFEPVHA 182 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~-et~~vi~s~----~-~~~~i~~~~~~~in~ 182 (453)
..+|.+.|||++||++ ++|.+||+||++..++ ...++|+|..||+.+ ++.++++.+ . .++.+++ +.|.
T Consensus 26 ~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~-~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~----~~n~ 100 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPR-HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRM----EQRS 100 (472)
T ss_dssp SCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCG-GGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEEC----SSCC
T ss_pred cCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcH-hHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEEC----CCCC
Confidence 3578899999999999 9999999999996542 223689999999987 477766654 2 3433432 1132
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC---CCCCCCc--
Q 012912 183 DNPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW---NDNGQKQ-- 257 (453)
Q Consensus 183 ~~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw---Ndng~~~-- 257 (453)
| + ++ |.+.-+.....+.+++|++|+++.|++++-+-+. ++.++.+..+... ++.....
T Consensus 101 G----~------~~----a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~---~~~~~~~~v~~~~~~~~~~~~~~~~ 163 (472)
T 1xhb_A 101 G----L------IR----ARLKGAAVSRGQVITFLDAHCECTAGWLEPLLAR---IKHDRRTVVCPIIDVISDDTFEYMA 163 (472)
T ss_dssp C----H------HH----HHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHH---HHHCTTEEEEEEEEEECSSSCCEEC
T ss_pred C----h------HH----HHHHHHHhccCCeEEEECCCeEeCccHHHHHHHH---HHhCCCEEEEeeeeeEcCCCceecc
Confidence 2 1 22 3333333345799999999999999998865554 4445555433221 1111100
Q ss_pred -----------c----------------cCCCceeeecCCCcccccccchhhhhhhC---CCCC---ccchHHHHHHHHh
Q 012912 258 -----------F----------------VHDPYVLYRSDFFPGLGWMLTRTTWDELS---PKWP---KAYWDDWLRLKEN 304 (453)
Q Consensus 258 -----------~----------------v~d~~~lyRsdffpgwGWalwr~~W~el~---p~WP---~~~WDdWlR~~~~ 304 (453)
. ..++....++.++.|...++.|+.|+++. +... ..++|.++| ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R--~~ 241 (472)
T 1xhb_A 164 GSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFR--IW 241 (472)
T ss_dssp CCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHH--HH
T ss_pred CCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHH--HH
Confidence 0 00111133444566677788999998854 3332 346777777 34
Q ss_pred hcCCceeecCCcceeccC
Q 012912 305 HKGRQFIRPEVCRTYNFG 322 (453)
Q Consensus 305 rkgr~cI~PevSRt~niG 322 (453)
+.|..+.+=..+++.|.+
T Consensus 242 ~~G~~i~~~p~~~v~H~~ 259 (472)
T 1xhb_A 242 QCGGTLEIVTCSHVGHVF 259 (472)
T ss_dssp HTTCEEEEEEEEEEEEEC
T ss_pred hcCCeEEEccCcEEEEEc
Confidence 566655543445666654
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.87 E-value=2.1e-08 Score=107.25 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=84.1
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCC---cceeeeccccccCCCCCCCh
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDK---LTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~---~~~i~~~~~~~in~~~~~~~ 188 (453)
+|.+.|+|++||+++.+.+||+||+++.. ...++|+|..||+.+++.++++.+.. +..+... +.+ .+
T Consensus 92 ~p~vsviIp~~n~~~~l~~~l~sl~~q~~--~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-----~~~--~g- 161 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKILAITLACLCNQKT--IYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQK-----DYG--YQ- 161 (625)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHHHHTCCC--SSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-----CCS--CC-
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHhhcc--CCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-----CCC--cc-
Confidence 46788999999999999999999999643 23689999999999999999998842 3333321 111 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
.+...+.|+. ....+.++++++|+.+.|++++-+...+ ..++.+..+++.
T Consensus 162 -----~~~a~N~g~~----~a~g~~v~~lD~D~~~~~~~l~~~~~~~---~~~~~~~~~g~~ 211 (625)
T 2z86_A 162 -----LCAVRNLGLR----AAKYNYVAILDCDMAPNPLWVQSYMELL---AVDDNVALIGPR 211 (625)
T ss_dssp -----HHHHHHHHHH----HCCSSEEEEECTTEEECTTHHHHHHHHH---HHCTTEEEECCE
T ss_pred -----hhHHHHHHHH----hCCcCEEEEECCCCCCCHHHHHHHHHHH---hcCCceEEEEee
Confidence 2222233444 3358999999999999999998655544 456777776653
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.87 E-value=8.4e-09 Score=110.25 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=115.2
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhc----CCcceeeeccccccCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSY----DKLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~~~~~i~~~~~~~in~~~~~ 186 (453)
.+|.+.|+|.+||+++++.+||+||+++.. ..++|+|..||+.++|.++++++ ..++.+. ..|.|
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~q~~---~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~-----~~n~G--- 441 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALNQTI---TDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS-----QKNKG--- 441 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHSSSC---CSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE-----ECCCC---
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHhCcC---CCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe-----CCCCC---
Confidence 467899999999999999999999998543 46799999999999898888775 2233331 11322
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC----CCCCCCcc--cC
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW----NDNGQKQF--VH 260 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw----Ndng~~~~--v~ 260 (453)
++. |++..+.....+.++++++|..+.|++++-+-. .+..++.+.+|.+. +.+|.... ..
T Consensus 442 -------~~~----a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 507 (625)
T 2z86_A 442 -------IGS----ASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLD---EFRKDLSLACVYTTNRNIDREGNLISNGYN 507 (625)
T ss_dssp -------HHH----HHHHHHHHCCSSEEEECCTTCEECTTHHHHHHH---HHHHCTTCSEEEEEEEEECTTSCEEEECCC
T ss_pred -------HHH----HHHHHHHhcCCCEEEEECCCcccChhHHHHHHH---HHHhCCCeeEEEeeeEEECCCCCEeccCcc
Confidence 223 333333434579999999999999999975544 34445666555542 22222100 00
Q ss_pred CC---ceeeecCCCcccccccchhhhhhhC---CCCC-ccchHHHHHHHHhhcCCceeecCCc
Q 012912 261 DP---YVLYRSDFFPGLGWMLTRTTWDELS---PKWP-KAYWDDWLRLKENHKGRQFIRPEVC 316 (453)
Q Consensus 261 d~---~~lyRsdffpgwGWalwr~~W~el~---p~WP-~~~WDdWlR~~~~rkgr~cI~PevS 316 (453)
.+ .......++++-+.+..|+.|+++. +... ..+||.|+|. ...|+....|++-
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~~~~eD~dl~~r~--~~~g~~~~~~~~~ 568 (625)
T 2z86_A 508 WPIYSREKLTSAMICHHFRMFTARAWNLTEGFNESISNAVDYDMYLKL--SEVGPFKHINKIC 568 (625)
T ss_dssp CSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCSSCSSCHHHHHHHHH--TTTSCEEEEEEEE
T ss_pred cccCCHHHHhhcccCCceEEEEHHHHHHhCCCCCccCChHHHHHHHHH--HHhCCEEEeCCcE
Confidence 00 0011234566778889999998754 3322 2367778884 4567655568763
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.79 E-value=2.5e-08 Score=104.31 Aligned_cols=187 Identities=17% Similarity=0.159 Sum_probs=112.5
Q ss_pred CCCceeeEEEEecCchH-HHHHHHHHHHhccCCCCCCccEEEeeCCCChhHH-HHHhhcCCcceeeeccccccCCCCCCC
Q 012912 110 VQVPVAAVVIMACNRAN-YLERTINSVFKYQGSVASKYPLFVSQDGSNPQVK-SKALSYDKLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~-~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~-~vi~s~~~~~~i~~~~~~~in~~~~~~ 187 (453)
..+|.+.|||++||+++ +|.++|+||++..++ ...++|||..||+.+++. ..+..+..++.+++. .|.|
T Consensus 63 ~~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~-~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~----~n~G---- 133 (501)
T 2ffu_A 63 VDLPATSVVITFHNEARSALLRTVVSVLKKSPP-HLIKEIILVDDYSNDPEDGALLGKIEKVRVLRND----RREG---- 133 (501)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCG-GGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECS----SCCH----
T ss_pred cCCCCEEEEEEeCcCcHHHHHHHHHHHHhhCch-hhceeEEEEECCCCchHHHHHHhcCCCEEEEECC----CCcC----
Confidence 45888999999999997 999999999996542 223589999999988764 344445444444321 1221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC----CCCCCC-------
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW----NDNGQK------- 256 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw----Ndng~~------- 256 (453)
.++ |++.-+.....+.+++|++|+++.|++++-+-+.+. .++.. .|++. +.....
T Consensus 134 ------~~~----A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~---~~~~~-vv~~~~~~~~~~~~~~~~~~~~ 199 (501)
T 2ffu_A 134 ------LMR----SRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVA---EDRTR-VVSPIIDVINMDNFQYVGASAD 199 (501)
T ss_dssp ------HHH----HHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHH---HCTTE-EEEEEEEEECTTTCCEECBCSS
T ss_pred ------HHH----HHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHH---hCCCe-EEEeeeccCcCCCceeecCCcc
Confidence 233 333333334579999999999999999886655553 34432 22211 111100
Q ss_pred ------cc----------------cCCCceeeecCCCcccccccchhhhhhhC---CC---CCccchHHHHHHHHhhcCC
Q 012912 257 ------QF----------------VHDPYVLYRSDFFPGLGWMLTRTTWDELS---PK---WPKAYWDDWLRLKENHKGR 308 (453)
Q Consensus 257 ------~~----------------v~d~~~lyRsdffpgwGWalwr~~W~el~---p~---WP~~~WDdWlR~~~~rkgr 308 (453)
.. ..++....++..+.|-..++.|+.|+++. +. |...++|.++| ....|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R--l~~~G~ 277 (501)
T 2ffu_A 200 LKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFR--VWQCGG 277 (501)
T ss_dssp EEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHH--HHHTTC
T ss_pred cceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHH--HHhcCC
Confidence 00 00222233455667778899999998864 32 22345566666 344565
Q ss_pred ceeecCCcceecc
Q 012912 309 QFIRPEVCRTYNF 321 (453)
Q Consensus 309 ~cI~PevSRt~ni 321 (453)
...+=..+++.|.
T Consensus 278 ~i~~~p~~~v~H~ 290 (501)
T 2ffu_A 278 SLEIIPCSRVGHV 290 (501)
T ss_dssp EEEEEEEEEEEEC
T ss_pred eEEEccCcEEEEE
Confidence 5544333455554
No 8
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.77 E-value=4.8e-08 Score=104.49 Aligned_cols=188 Identities=13% Similarity=0.151 Sum_probs=115.2
Q ss_pred CCCceeeEEEEecCch-HHHHHHHHHHHhccCCCCCCccEEEeeCCCChhH-HHHHhhc----CCcceeeeccccccCCC
Q 012912 110 VQVPVAAVVIMACNRA-NYLERTINSVFKYQGSVASKYPLFVSQDGSNPQV-KSKALSY----DKLTYMQHLDFEPVHAD 183 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP-~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et-~~vi~s~----~~~~~i~~~~~~~in~~ 183 (453)
..+|.+.|||++||++ ++|.+||+||++..++ ...++|||..||+.+++ .++++.+ ..++.++. +.|.|
T Consensus 109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~-~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~----~~n~G 183 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPP-ELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRT----KKREG 183 (570)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCG-GGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEEC----SSCCC
T ss_pred CCCCCeEEEEEECCCCHHHHHHHHHHHHhcCCc-cCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEEC----CCCCC
Confidence 3578899999999998 9999999999996532 12358999999998877 6666654 23433322 11222
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC---CCCC------
Q 012912 184 NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW---NDNG------ 254 (453)
Q Consensus 184 ~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw---Ndng------ 254 (453)
.++-.+.|+. ....+.+++|++|+++.|++++-+-+.+ ..++.+...+.. +...
T Consensus 184 ----------~~~A~N~G~~----~A~gd~i~fLD~D~~~~p~~L~~ll~~l---~~~~~~vv~~~i~~~~~~~~~~~~~ 246 (570)
T 2d7i_A 184 ----------LIRTRMLGAS----VATGDVITFLDSHCEANVNWLPPLLDRI---ARNRKTIVCPMIDVIDHDDFRYETQ 246 (570)
T ss_dssp ----------HHHHHHHHHH----HCCSSEEEECCSSEEECTTCSHHHHHHH---HHCTTEEEEEEEEEECTTTCCEECC
T ss_pred ----------HHHHHHHHHH----hcCCCEEEEEcCCccccccHHHHHHHHH---HhCCCEEEeeeeeccCCCchhhccc
Confidence 2222233443 3357999999999999999998665554 345554321111 1100
Q ss_pred ----CCc-----------------ccCCCceeeecCCCcccccccchhhhhhhC---CCCC---ccchHHHHHHHHhhcC
Q 012912 255 ----QKQ-----------------FVHDPYVLYRSDFFPGLGWMLTRTTWDELS---PKWP---KAYWDDWLRLKENHKG 307 (453)
Q Consensus 255 ----~~~-----------------~v~d~~~lyRsdffpgwGWalwr~~W~el~---p~WP---~~~WDdWlR~~~~rkg 307 (453)
... ...++...+++..+.|-..++.|+.|+++. +... ..++|.++| ....|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~R--l~~~G 324 (570)
T 2d7i_A 247 AGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFK--VWMCG 324 (570)
T ss_dssp TTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHH--HHHTT
T ss_pred cCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHH--HHhCC
Confidence 000 001122334555677888899999998864 3332 234566666 44567
Q ss_pred CceeecCCcceecc
Q 012912 308 RQFIRPEVCRTYNF 321 (453)
Q Consensus 308 r~cI~PevSRt~ni 321 (453)
...++=..+++.|.
T Consensus 325 ~~i~~~p~~~v~H~ 338 (570)
T 2d7i_A 325 GRMEDIPCSRVGHI 338 (570)
T ss_dssp CEEEEEEEEEEEEC
T ss_pred CeEEEccCeEEEEE
Confidence 66555334456664
No 9
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.73 E-value=2.3e-08 Score=109.34 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred CCCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCCh-----hHHHHHhhc-CCcceeeeccccccCCC
Q 012912 110 VQVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNP-----QVKSKALSY-DKLTYMQHLDFEPVHAD 183 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~-----et~~vi~s~-~~~~~i~~~~~~~in~~ 183 (453)
...|.+.|||++|||++++.+||+||+++.......++|||..||+.+ .+.+.++.. ..+..|.. + |.|
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~----~-N~G 251 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQ----P-NLG 251 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEEC----C-CCH
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEEC----C-CCC
Confidence 345789999999999999999999999853211123489999999854 344555443 33444421 2 432
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEec----CCCCCCCc--
Q 012912 184 NPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSS----WNDNGQKQ-- 257 (453)
Q Consensus 184 ~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISa----wNdng~~~-- 257 (453)
.+.-++.|+..+....+++.+++|+||+++.|++++-+-+.++ .++.+.+|++ ..+.....
T Consensus 252 ----------~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~---~~~~~~~vg~~il~~~~~~~~~~~ 318 (657)
T 4fix_A 252 ----------GSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHR---FAKAPMLVGGQMLNLQEPSHLHIM 318 (657)
T ss_dssp ----------HHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHH---HBSSCCEEEEEEEETTSTTEECCS
T ss_pred ----------HHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHH---hCCCcEEEEeEEecCCCCceeeec
Confidence 3445556887776543579999999999999999886665554 4455544443 12210000
Q ss_pred --c------------------------cC-------CCceeeecCCCcccccccchhhhhhhCCCCCc-cchH---HHHH
Q 012912 258 --F------------------------VH-------DPYVLYRSDFFPGLGWMLTRTTWDELSPKWPK-AYWD---DWLR 300 (453)
Q Consensus 258 --~------------------------v~-------d~~~lyRsdffpgwGWalwr~~W~el~p~WP~-~~WD---dWlR 300 (453)
. .. ........++..+++.+..|+.|+++..--|. .+|+ -++|
T Consensus 319 g~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~~F~~~ED~Dl~lR 398 (657)
T 4fix_A 319 GEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPLFIKWDDADYGLR 398 (657)
T ss_dssp CEEEETTTTEEEECTTCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCSCSSSSHHHHHHHH
T ss_pred ccEeccccccccccccccccccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChhHhccCcHHHHHHH
Confidence 0 00 00011123466788899999999986421122 1343 3455
Q ss_pred HHHhhcCCceee-cCCcceeccC
Q 012912 301 LKENHKGRQFIR-PEVCRTYNFG 322 (453)
Q Consensus 301 ~~~~rkgr~cI~-PevSRt~niG 322 (453)
....|..+++ |+. .++|.|
T Consensus 399 --~~~~G~ki~~~p~a-~V~H~~ 418 (657)
T 4fix_A 399 --AAEHGYPTVTLPGA-AIWHMA 418 (657)
T ss_dssp --HHHTTCCEEEEEEE-EEEECC
T ss_pred --HHHcCCeEEEECCE-EEEEcC
Confidence 4456766655 544 466754
No 10
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.61 E-value=4.5e-09 Score=115.20 Aligned_cols=165 Identities=13% Similarity=0.219 Sum_probs=0.0
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcC-----CcceeeeccccccCCCCCC
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYD-----KLTYMQHLDFEPVHADNPG 186 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~-----~~~~i~~~~~~~in~~~~~ 186 (453)
||.+.|||++||+++++.+||+||+++.. ..++|+|..||+.++|.++++++. .++.+++ +.|.|.
T Consensus 1 Mp~vSVIIp~yN~~~~L~~~L~Sll~Qt~---~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~----~~n~G~-- 71 (729)
T 3l7i_A 1 MNKLTIIVTYYNAEEYITGCLESIKQQRT---QDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDL----DENSGH-- 71 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCCCHHHHHHHHHHHHhCCC---CCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEEC----CCCCCH--
Confidence 67899999999999999999999999643 367999999999999988888772 2333321 113332
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCCCCCCcc----c---
Q 012912 187 ELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWNDNGQKQF----V--- 259 (453)
Q Consensus 187 ~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNdng~~~~----v--- 259 (453)
+...+.|+... ..+.++++++|..+.|++++-+.+.+. ..|--+..+..+...+.... .
T Consensus 72 --------~~arN~gi~~A----~gdyI~flD~Dd~~~p~~l~~l~~~l~--~~d~v~~~~~~~~~~~~~~~~~~~~~~~ 137 (729)
T 3l7i_A 72 --------AHARNIALEEV----ETPYFMFLDADDELASYAITFYLEKFN--NTDGLIAPIHSFTTQRPQFVDLDRVRVE 137 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------HHHHHHHHHhc----cCCEEEEECCCCCCChhHHHHHHHHhc--CCCEEEEeeEEeecCCCccccccceeee
Confidence 22222354443 478999999999999999987777665 22222222222222211100 0
Q ss_pred -----CCCceeeecCCCcccccccchhhhhhhCCCCCc-----cchHHHHHH
Q 012912 260 -----HDPYVLYRSDFFPGLGWMLTRTTWDELSPKWPK-----AYWDDWLRL 301 (453)
Q Consensus 260 -----~d~~~lyRsdffpgwGWalwr~~W~el~p~WP~-----~~WDdWlR~ 301 (453)
..+..+. ...++|+.+..|+.|++..-.|+. .+||-|+|.
T Consensus 138 ~~~~~~~~~~~~--~~~~~~~~~~rr~~l~~~gl~fde~~~~~ED~d~~~rl 187 (729)
T 3l7i_A 138 YFNAKENINSFL--RKQSACNIIFRTAIVRAHHIRFNENLNTYVDWSFVLEY 187 (729)
T ss_dssp ----------------------------------------------------
T ss_pred eecchhhHHHHh--hccchhheeeeHHHHHHcCCCcCCCCCcccCHHHHHHH
Confidence 0000111 134678889999999865433433 356667763
No 11
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=98.48 E-value=4.4e-07 Score=101.05 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=110.0
Q ss_pred CCCceeeEEEEecCchHHH-HHHHHHHHhccCCCCCCccEEEeeCCCChhHH---------------HHHhhcC---Ccc
Q 012912 110 VQVPVAAVVIMACNRANYL-ERTINSVFKYQGSVASKYPLFVSQDGSNPQVK---------------SKALSYD---KLT 170 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~~l-~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~---------------~vi~s~~---~~~ 170 (453)
...|.+.|+|.+||.+..+ ++||+||+++..+ .++++|+|..||+.+++. +.++.+. .+.
T Consensus 137 ~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp-~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~ 215 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPADMLSVTLAAAKNMIYP-ARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVV 215 (802)
T ss_dssp TTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCC-TTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred cCCCcEEEEEEECCCCHHHHHHHHHHHHhccCC-CCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcE
Confidence 4567899999999999766 9999999997654 345899999999977662 2222221 233
Q ss_pred eeeeccccccCCCCCCChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 171 YMQHLDFEPVHADNPGELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 171 ~i~~~~~~~in~~~~~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
.+... + + .++ .+. |++..+...+++.++++++|+.+.||+++-+-. .+++|+.+.+|++.
T Consensus 216 ~i~~~---~-~---~~G------Ka~----alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~---~~~~dp~v~~V~~~ 275 (802)
T 4hg6_A 216 YSTRE---R-N---EHA------KAG----NMSAALERLKGELVVVFDADHVPSRDFLARTVG---YFVEDPDLFLVQTP 275 (802)
T ss_dssp EEECS---S-C---CSH------HHH----HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHH---HHHHSSSCCEEECC
T ss_pred EEEec---C-C---CCc------chH----HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHH---HHhcCCCeEEEecc
Confidence 33221 1 1 111 122 444455555689999999999999999885544 44558899888874
Q ss_pred CCCCCCc-----------ccCCCc----------eeeecCCCcccccccchhhhhhhCCCCCc----cchHHHHHHHHhh
Q 012912 251 NDNGQKQ-----------FVHDPY----------VLYRSDFFPGLGWMLTRTTWDELSPKWPK----AYWDDWLRLKENH 305 (453)
Q Consensus 251 Ndng~~~-----------~v~d~~----------~lyRsdffpgwGWalwr~~W~el~p~WP~----~~WDdWlR~~~~r 305 (453)
....... ...... ..+...+++|-+-+..|+.++++. .|+. .+++.++| ..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vG-gf~~~~~~ED~~l~~r--l~~ 352 (802)
T 4hg6_A 276 HFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAG-GFAGETITEDAETALE--IHS 352 (802)
T ss_dssp CCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHT-TCCCSSSSHHHHHHHH--HHT
T ss_pred EEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcC-CcCCCCcchHHHHHHH--HHH
Confidence 3211000 000000 011223567888889999999874 2332 23444444 555
Q ss_pred cCCceee
Q 012912 306 KGRQFIR 312 (453)
Q Consensus 306 kgr~cI~ 312 (453)
+|..+.+
T Consensus 353 ~G~ri~~ 359 (802)
T 4hg6_A 353 RGWKSLY 359 (802)
T ss_dssp TTCCEEE
T ss_pred cCCeEEE
Confidence 6766554
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.46 E-value=8.4e-07 Score=87.99 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=82.3
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccc---cccCCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDF---EPVHADNPGE 187 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~---~~in~~~~~~ 187 (453)
.+|.+.|||++||+.+++.+||+||+++.. ...++|+|..||+.++|.++++++.. ..+..... .+.|.|
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~--~~~~eiivVDdgS~D~t~~~~~~~~~-~~~~~~~~~~~~~~n~G---- 118 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVD--GLVDELIVLDSGSTDDTEIRAVAAGA-RVVSREQALPEVPIRPG---- 118 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBT--TTBSEEEEEECSCCSSHHHHHHHTTC-EEEEHHHHCTTSCCCCS----
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhC--CCCcEEEEEeCCCCchHHHHHHHhhh-hhccceeeeccCCCCCC----
Confidence 457799999999999999999999999642 23478999999999999999998842 11111100 111222
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCce-eChhHHHHHHHHHHhhcCCCcEEEEec
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDME-IAPDFFDYFEAAADLLDKDKSIMAVSS 249 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~-~SPDFf~Yf~~~l~ly~~D~sI~~ISa 249 (453)
. +. |++..+.....+.++++++|.. +.|+++.-+- ..+..++.+..|.|
T Consensus 119 ~------~~----a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~---~~l~~~~~~~~v~g 168 (329)
T 3ckj_A 119 K------GE----ALWRSLAASRGDIVVFVDSDLINPHPMFVPWLV---GPLLTGDGVHLVKS 168 (329)
T ss_dssp H------HH----HHHHHHHHCCCSEEEECCTTEESCCTTHHHHHH---HHHHSCSSCCEEEE
T ss_pred H------HH----HHHHHHHhCCCCEEEEECCCCCCcChHHHHHHH---HHHHhCCCccEEEE
Confidence 1 22 3333444445799999999999 8999988554 44445666655555
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.22 E-value=2.3e-06 Score=87.85 Aligned_cols=121 Identities=12% Similarity=-0.003 Sum_probs=82.1
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhc--cCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeecccccc-CCCCCCCh
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKY--QGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPV-HADNPGEL 188 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~--~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~i-n~~~~~~~ 188 (453)
.|.+.|||++||..+++.+||++|.++ +. ...++|+|..||+.+.|.++++.+.. ..+... ..-+ +.++ .+.
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~--~~~~EIIVVDDgStD~T~~i~~~~~~-~v~~~~-~~~i~~~~n-~G~ 167 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERA--PLIDQILVVDADSEDGTAGVAASHGA-EVYSEN-ELMSGYGDA-HGK 167 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHS--CCCSEEEEEECSCSSSHHHHHHHTTC-EEEEGG-GTTGGGCSC-CSH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcC--CCCeEEEEEcCcCCccHHHHHHHhCc-hhcccc-eeEecCCcc-CCH
Confidence 467899999999999999999999873 22 23579999999999999999998842 222110 0000 1111 112
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCce-eChhHHHHHHHHHHhhcCCCcEEEEecC
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDME-IAPDFFDYFEAAADLLDKDKSIMAVSSW 250 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~-~SPDFf~Yf~~~l~ly~~D~sI~~ISaw 250 (453)
. . |++.-+....++.+++++.|+. +.|+++.-+-..+ ..++.+..|.|+
T Consensus 168 g------~----A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l---~~~p~~d~v~G~ 217 (387)
T 3f1y_A 168 G------D----AMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPV---LEVPGVRFVKAA 217 (387)
T ss_dssp H------H----HHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHH---HHSTTCCEEEEE
T ss_pred H------H----HHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHH---HHCCCceEEEEe
Confidence 2 2 5555565556899999999999 8999998554444 445555555553
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=97.66 E-value=0.00024 Score=69.96 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=87.8
Q ss_pred CCceeeEEEEecCchHHHHHHHHHHH---hccCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCC
Q 012912 111 QVPVAAVVIMACNRANYLERTINSVF---KYQGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 111 ~~p~~PIlI~a~NRP~~l~R~LesL~---k~~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~ 187 (453)
..+.+.|||.+|||+++|.+||+||. +.+ ...++|+|..|+.+. .| +
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~---~~~~EIiVVdds~d~-------~f--------------~------ 112 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQ---QLDYGIYVINQAGDT-------IF--------------N------ 112 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHT---TCEEEEEEEEECSSS-------CC--------------C------
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHh---cCCceEEEEEeCCCC-------cc--------------c------
Confidence 35789999999999999999999998 333 246789998884321 00 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEecCCC-CCCCcccCCCceee
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVSSWND-NGQKQFVHDPYVLY 266 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~ISawNd-ng~~~~v~d~~~ly 266 (453)
.++-.+.|+.........+.++++++|+++.||+..|. ....++.+ +...+ .+. ..++
T Consensus 113 ------~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~~~------~~~~p~~~--~~~~~~~~~----~~~~--- 171 (287)
T 2fy7_A 113 ------RAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYR------CFSQPRHI--SVAMDKFGF----SLPY--- 171 (287)
T ss_dssp ------HHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCS------CCSSCEEC--CCEEGGGTT----SCSS---
T ss_pred ------hhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcceEe------cCCCCceE--EEeeccccc----CCCc---
Confidence 01111224433334446899999999999999963221 11233321 11111 010 1111
Q ss_pred ecCCCcccccccchhhhhhhC---C---CCCccchHHHHHHHHhhcCCceeecC
Q 012912 267 RSDFFPGLGWMLTRTTWDELS---P---KWPKAYWDDWLRLKENHKGRQFIRPE 314 (453)
Q Consensus 267 RsdffpgwGWalwr~~W~el~---p---~WP~~~WDdWlR~~~~rkgr~cI~Pe 314 (453)
..+.|-..+++|+.++++. . .|-..++|.|+| ..+.|....+|+
T Consensus 172 --~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~R--l~~~G~~i~~~~ 221 (287)
T 2fy7_A 172 --VQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNR--LVFRGMSISRPN 221 (287)
T ss_dssp --TTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHH--HHHTTCCCBCCC
T ss_pred --CceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHH--HHHcCCeEEecC
Confidence 1334556788999998764 2 233345566777 445676666655
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.32 E-value=0.0011 Score=62.96 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=64.1
Q ss_pred CceeeEEEEecCchHHHHHHHHHHHhc-cCCCCCCccEEEeeCCCChhHHHHHhhcCCcceeeeccccccCCCCCCChhH
Q 012912 112 VPVAAVVIMACNRANYLERTINSVFKY-QGSVASKYPLFVSQDGSNPQVKSKALSYDKLTYMQHLDFEPVHADNPGELTA 190 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~~l~R~LesL~k~-~~~~~~~~~LiVsqDG~~~et~~vi~s~~~~~~i~~~~~~~in~~~~~~~~~ 190 (453)
++.+.| |++||+.++|++||+||.+. ... ..++|+|..+|+.+ + .+.
T Consensus 15 ~~~iSI-I~~yN~~~~l~~~l~sl~~sl~~q--~~~EiIVVDn~s~d--------~---------------~g~------ 62 (249)
T 2nxv_A 15 TLMFSV-CSLVRDQAKYDRLLESFERFGFTP--DKAEFLAADNREGN--------Q---------------FHG------ 62 (249)
T ss_dssp CCSEEE-EEEESCHHHHHHHHHHHHHTTCCT--TTEEEEEEECTTSC--------S---------------CCT------
T ss_pred cceEEE-EEeeCCHHHHHHHHHHHHHhccCC--CcEEEEEEECCCCC--------c---------------ccH------
Confidence 345666 46799999999999999862 211 12789998877642 0 000
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhc-CCCcEEEEec
Q 012912 191 YYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLD-KDKSIMAVSS 249 (453)
Q Consensus 191 y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~-~D~sI~~ISa 249 (453)
+. |.+.-......+.+++|..|+.+.|++++-+.+.++... .++.+.+++.
T Consensus 63 ----a~----a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~vg~ 114 (249)
T 2nxv_A 63 ----FS----WHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGV 114 (249)
T ss_dssp ----TT----HHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEEES
T ss_pred ----HH----HHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEEee
Confidence 11 333333334579999999999999999986666554332 2577766653
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=95.16 E-value=0.036 Score=57.00 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred EEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh----cC---Ccceeeeccccc--cCCCCCCC
Q 012912 117 VVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS----YD---KLTYMQHLDFEP--VHADNPGE 187 (453)
Q Consensus 117 IlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s----~~---~~~~i~~~~~~~--in~~~~~~ 187 (453)
|||+.||. +.+..++++|..... ...++|+|..||+.+.|.+++++ .. ++..+.+....+ .|.|.
T Consensus 3 lVIiP~~e-E~I~~vl~~l~~~~~--~~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~Gk--- 76 (397)
T 2bo4_A 3 LVVFPFKH-EHPEVLLHNVRVAAA--HPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGK--- 76 (397)
T ss_dssp EEEEECCS-SCHHHHHHHHHHHHH--STTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSH---
T ss_pred EEEEeCCc-cCHHHHHHHHHHhcc--CCCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCH---
Confidence 44555554 458999999864321 12468999999999999999882 21 222222211100 02221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCce-eChhHHHHHHHHH
Q 012912 188 LTAYYKIARHYKWALDNLFYKHNFSRVIILEDDME-IAPDFFDYFEAAA 235 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~-~SPDFf~Yf~~~l 235 (453)
.. .+.. |+.+.....+++.+++++-|+. ..|+.+.-|-+.+
T Consensus 77 -G~--Al~~----G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l 118 (397)
T 2bo4_A 77 -GD--GMNT----ALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 118 (397)
T ss_dssp -HH--HHHH----HHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHH
T ss_pred -HH--HHHH----HHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 11 1222 3333223345899999999996 8999888665443
No 17
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=92.89 E-value=0.16 Score=51.89 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=74.7
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhH---HHHHhhcC-----Ccceeeeccc--ccc--C
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQV---KSKALSYD-----KLTYMQHLDF--EPV--H 181 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et---~~vi~s~~-----~~~~i~~~~~--~~i--n 181 (453)
..+|||++||=-. ++|++++++. +.+.+||+.+||+.+.+ .++++.|. .+.-|++.+. ... +
T Consensus 54 klSIVVPvYNEe~---~lLesVl~qi---~~d~eIIlVdDGS~D~s~~e~dil~~~~~~~~~ri~viHQkn~gls~Ar~~ 127 (391)
T 2wvl_A 54 QTAIVVPTRNERL---KLLEGVLSGI---PHEALILVASNSSPDRFQMERDLLEEFAHLTERPALIFHQKDPALAEALRA 127 (391)
T ss_dssp TEEEEEEESSCCH---HHHHHHHHTS---CTTSEEEEEECCCHHHHHHHHHHHHHHHHHTTCCEEEEETTCHHHHHHHHH
T ss_pred ceEEEEeccCcHH---HHHHHHHhcC---CCCceEEEEECCCCCChHhHHHHHHHHHhhcccceEEEeccChHHHHHHHh
Confidence 4789999999987 4799999964 35789999999997766 45666662 2333322110 000 0
Q ss_pred CCCC---------CChhHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhh--cCCCcEEEE-ec
Q 012912 182 ADNP---------GELTAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLL--DKDKSIMAV-SS 249 (453)
Q Consensus 182 ~~~~---------~~~~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly--~~D~sI~~I-Sa 249 (453)
.|.. +.-+|.-.+. |+...= ..+.++|-|++-|.-++.+..+|+......+ ...+ --+| =+
T Consensus 128 ~G~~~il~~~~~vR~GKGegmi~-----Gi~~Ak-~~~geYVgFvDADdyi~~~v~Eyvk~yaag~~~a~s~-~~MVRI~ 200 (391)
T 2wvl_A 128 GGYPHPIGEDGLVRSGKAEGMIL-----ALVFAA-LSGRRYVGFIDADNYFPGAVWEYVRAYAAGFLMAKTP-FAMVRIL 200 (391)
T ss_dssp TTCCTTBCTTSSBCCSHHHHHHH-----HHHHHH-HTTCSEEEECCSCBSCHHHHHHHHHHHHHHHHHCCSS-EEEEEEE
T ss_pred cCcchhhcccccccccchHHHHH-----HHHHHH-hcCCCEEEEEcCcCCCccCHHHHHHHHHHHhcccCCC-cceEEEe
Confidence 1000 0001111111 221110 0136999999999999999999987655553 2233 4455 57
Q ss_pred CCC
Q 012912 250 WND 252 (453)
Q Consensus 250 wNd 252 (453)
|+.
T Consensus 201 wR~ 203 (391)
T 2wvl_A 201 WRY 203 (391)
T ss_dssp CCC
T ss_pred ccc
Confidence 876
No 18
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=76.23 E-value=8.6 Score=39.45 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.7
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhH------HHHHhhc
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQV------KSKALSY 166 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et------~~vi~s~ 166 (453)
.+.|||++||--+.+ +..+++.-+ ..++|+|..||+++.+ .++++.|
T Consensus 52 ~iSVVIP~yNEE~~l---I~~vL~~i~---~~~eIIvVDDgSrD~tD~~~~~~~~l~~~ 104 (394)
T 2zu9_A 52 KMAVIVPMKNEKLHL---VDGVLKAIP---HKCPIIIVSNSKREGPNRYKLEVDLIRHF 104 (394)
T ss_dssp TEEEEEEESSCCHHH---HHHHHHHSC---TTSCEEEEECCCCSSSCHHHHHHHHHHHH
T ss_pred CEEEEEecCcccHHH---HHHHHHcCC---CCcEEEEEECcCcccccchhhHHHHHHHH
Confidence 378999999999753 555544222 2468999999996544 4555554
No 19
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=68.40 E-value=6.4 Score=38.22 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHH-HhccCCCCCCccEEEeeCCCChhHHHHHhhc----C-CcceeeeccccccCCCCCCChhHHHHHHH
Q 012912 123 NRANYLERTINSV-FKYQGSVASKYPLFVSQDGSNPQVKSKALSY----D-KLTYMQHLDFEPVHADNPGELTAYYKIAR 196 (453)
Q Consensus 123 NRP~~l~R~LesL-~k~~~~~~~~~~LiVsqDG~~~et~~vi~s~----~-~~~~i~~~~~~~in~~~~~~~~~y~~Iar 196 (453)
|-...+.-++.|| ++.. .....++|..|+-.++..+.++.. . .+..+ .++.+... ..+.. .++...+.
T Consensus 10 ~Y~~~~~vli~Sl~l~~~---~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~-~~~~~~~~-~~~~~-~~~~s~~~ 83 (311)
T 1g9r_A 10 NYAAYLCVAAKSVEAAHP---DTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI-DVNPEDFA-GFPLN-IRHISITT 83 (311)
T ss_dssp GGHHHHHHHHHHHHHTCT---TSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEE-ECCGGGGT-TSCCC-CTTCCGGG
T ss_pred hHHHHHHHHHHHHHHHcC---CCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEE-EcCHHHHh-cCccc-cccCCHHH
Confidence 3456677888888 6632 345778888888777665555443 2 12111 11111100 00000 01111233
Q ss_pred HHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 197 HYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 197 HYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
++|.-+..+|. .+++||.|+.|+++--|-=+-++. =-.+..+.++.
T Consensus 84 y~Rl~l~~ll~--~~~kvlyLD~D~iv~~di~eL~~~----~l~~~~~aav~ 129 (311)
T 1g9r_A 84 YARLKLGEYIA--DCDKVLYLDIDVLVRDSLTPLWDT----DLGDNWLGASI 129 (311)
T ss_dssp GGGGGHHHHCC--SCSCEEEECSSEEECSCCHHHHTC----CCTTCSEEEEE
T ss_pred HHHHHHHHHhh--hcCEEEEEcCCeEeccCHHHHhcc----CCCCcEEEEEe
Confidence 34445666664 489999999999998776554432 01234566654
No 20
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=67.49 E-value=16 Score=36.04 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=52.0
Q ss_pred eeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCC-hhHHHHHhhcC-CcceeeeccccccCCCCCCChhHH
Q 012912 114 VAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSN-PQVKSKALSYD-KLTYMQHLDFEPVHADNPGELTAY 191 (453)
Q Consensus 114 ~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~-~et~~vi~s~~-~~~~i~~~~~~~in~~~~~~~~~y 191 (453)
.--|||.||+|++.|.+.++.+.++.. -.+|+|.=-+++ +.......++. .-..++.... +.|. ....|..
T Consensus 29 ~FTvvi~ty~R~~~L~~lv~~~~~~~~----v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~-~~ns-LnnRF~p- 101 (293)
T 1omz_A 29 SFTLIMQTYNRTDLLLRLLNHYQAVPS----LHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQ-TANK-MRNRLQV- 101 (293)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHTTSTT----EEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEEC-SSCC-GGGGGSC-
T ss_pred ceEEEEEeecccHHHHHHHHHHhcCCC----CCeEEEEeCCCCCCCChhhccccCCCCccEEEEeC-CCCc-hhhccCC-
Confidence 356789999999999999999887532 235655433332 11222222321 0011211111 1111 0111111
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHH
Q 012912 192 YKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYF 231 (453)
Q Consensus 192 ~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf 231 (453)
+....-+.|+.+|||+.++.|=++|-
T Consensus 102 --------------~~~i~T~AVLslDDDv~l~~~el~fa 127 (293)
T 1omz_A 102 --------------FPEVETNAVLMVDDDTLISAQDLVFA 127 (293)
T ss_dssp --------------CTTCCSSEEEEECTTEEECHHHHHHH
T ss_pred --------------CccCCcCEEEEEcCCCCCCHHHHHHH
Confidence 11223588999999999999988763
No 21
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=62.33 E-value=33 Score=32.73 Aligned_cols=123 Identities=12% Similarity=0.171 Sum_probs=67.6
Q ss_pred eeEEEEec--CchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChhHHHHHhh----cCCcceeeeccccccCCCCCCCh
Q 012912 115 AAVVIMAC--NRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQVKSKALS----YDKLTYMQHLDFEPVHADNPGEL 188 (453)
Q Consensus 115 ~PIlI~a~--NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~et~~vi~s----~~~~~~i~~~~~~~in~~~~~~~ 188 (453)
++|+ +|+ |--..+.-++.||++..+ .....++|..|+-.++..+.++. ++ +.+......+...... ..
T Consensus 6 i~I~-~~~d~~Y~~~~~v~i~Sl~~~~~--~~~~~~~il~~~is~~~~~~L~~~~~~~~--~~i~~~~~~~~~~~~~-~~ 79 (276)
T 3tzt_A 6 DALL-LTLDENYIPQMKVLMTSIYINNP--GRIFDVYLIHSRISEDKLKDLGEDLKKFS--YTLYPIRATDDLFSFA-KV 79 (276)
T ss_dssp EEEE-EECCGGGHHHHHHHHHHHHHHST--TCCEEEEEEESCCCHHHHHHHHHHHHTTT--CEEEEEECC----------
T ss_pred EEEE-EEeCHhHHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCHHHHHHHHHHHHHcC--CEEEEEEeCHHHHhcC-cc
Confidence 5555 444 446778889999998532 24667888888877665544443 32 1222211111011000 01
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcEEEEEccCceeChhHHHHHHHHHHhhcCCCcEEEEe
Q 012912 189 TAYYKIARHYKWALDNLFYKHNFSRVIILEDDMEIAPDFFDYFEAAADLLDKDKSIMAVS 248 (453)
Q Consensus 189 ~~y~~IarHYk~aLs~vF~~~~~~~vIILEDDl~~SPDFf~Yf~~~l~ly~~D~sI~~IS 248 (453)
...+..+..+|.-+..+|.. .++++|.|+.|+++--|.-+.++. + -.+.-+.++.
T Consensus 80 ~~~~s~~~~~rl~~~~l~p~-~~~kvlylD~D~iv~~di~~L~~~--d--l~~~~~aav~ 134 (276)
T 3tzt_A 80 TDRYPKEMYYRLLAGEFLPE-NLGEILYLDPDMLVINPLDDLLRT--D--ISDYILAAAS 134 (276)
T ss_dssp ----CHHHHHHHTHHHHSCT-TCCEEEEECSSEEECSCSHHHHTC--C--CTTSSEEEEE
T ss_pred ccccCHHHHHHHHHHHHccc-ccCeEEEEeCCeeecCCHHHHhhc--C--CCCCeEEEEE
Confidence 11223455566677777742 389999999999998887665542 1 1233466654
No 22
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.74 E-value=11 Score=29.72 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 62 LLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.-..+|..++..|..||.++...|.+..++++.++++++
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335667788888888888888888888888888887744
No 23
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=55.47 E-value=1.3e+02 Score=28.91 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=65.7
Q ss_pred CceeeEEEEecCchH---HHHHHHHHHHhccCCCCCCccEEEeeCCCCh--hHHHHHhhcCCcceeeecccc-ccCCCCC
Q 012912 112 VPVAAVVIMACNRAN---YLERTINSVFKYQGSVASKYPLFVSQDGSNP--QVKSKALSYDKLTYMQHLDFE-PVHADNP 185 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~---~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~--et~~vi~s~~~~~~i~~~~~~-~in~~~~ 185 (453)
.|++=||=+||.||. +|.|+-..|..+.+ ..=||.-|++.. .|.++++.-. +.+. |+..+ +.+...+
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~-----l~WIVVEd~~~~~~~v~~lL~~sg-l~y~-HL~~~~~~~~~~~ 74 (246)
T 2d0j_A 2 LPTIYAITPTYSRPVQKAELTRLANTFRQVAQ-----LHWILVEDAAARSELVSRFLARAG-LPST-HLHVPTPRRYKRP 74 (246)
T ss_dssp CCCEEEEEEECCSTTHHHHHHHHHHHHTTSTT-----EEEEEEESSSSCCHHHHHHHHHSC-SCEE-EEECCCCCC----
T ss_pred CCEEEEEeCCCCccchhHHHHHHHHHHhcCCc-----eEEEEEcCCCCCCHHHHHHHHHcC-CceE-EEecCCccccCCC
Confidence 466667888999984 57788888888642 355677787743 4777777653 4443 33221 1111111
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcC-----CcEEEEEccCceeChhHHHHHH
Q 012912 186 GELTAYYKIARHYKWALDNLFYKHN-----FSRVIILEDDMEIAPDFFDYFE 232 (453)
Q Consensus 186 ~~~~~y~~IarHYk~aLs~vF~~~~-----~~~vIILEDDl~~SPDFf~Yf~ 232 (453)
+.-.+. ...+-||.++=++.. .+=|.|-+||..-+-.+|+=|.
T Consensus 75 ~~prg~----~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR 122 (246)
T 2d0j_A 75 GLPRAT----EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMR 122 (246)
T ss_dssp CCCCCH----HHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHT
T ss_pred CCcchH----HHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHh
Confidence 100111 123459988866531 3668899999999999887543
No 24
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.15 E-value=37 Score=34.49 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhhhhhhHHH----HHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 40 SEYADRVAAAVEAENHCTNQ----MRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
+++-+.++.+-.--+.|.+- +.+|...+|.++.+|..||-+...+++++..+.+.++.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 407 TEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455566443 344455556666667777777766666666666665554
No 25
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=51.95 E-value=6.9 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=19.5
Q ss_pred hHhHHHHhhhhhHHhHHHHHHHHHHHhcc
Q 012912 74 IVALEDEKKRRDEECGQLKALVKDLERRG 102 (453)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (453)
|.+||.+..-++++|.--.+.+..||.++
T Consensus 2 iaaleqkiaaleqkcaaceqkiaaleqkg 30 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAALEQKG 30 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56777777777888877777777776653
No 26
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=50.80 E-value=15 Score=28.53 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 59 QMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+...+...|.....+|.+||..++..+.+..+++..++++.+
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999998754
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=49.34 E-value=52 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
..++..+...+.........|...+++.+.+|..++.-++++|..
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777888889999999999999999999988753
No 28
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=37.75 E-value=1.8e+02 Score=27.92 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=66.1
Q ss_pred CceeeEEEEecCchH---HHHHHHHHHHhccCCCCCCccEEEeeCCC--ChhHHHHHhhcCCcceeeecccc-ccCCC--
Q 012912 112 VPVAAVVIMACNRAN---YLERTINSVFKYQGSVASKYPLFVSQDGS--NPQVKSKALSYDKLTYMQHLDFE-PVHAD-- 183 (453)
Q Consensus 112 ~p~~PIlI~a~NRP~---~l~R~LesL~k~~~~~~~~~~LiVsqDG~--~~et~~vi~s~~~~~~i~~~~~~-~in~~-- 183 (453)
.|.+=||=.||.||. +|.|+-..|+.+.+ ..=||.-|++ .++|.++++.-. +.+. |+..+ +.+..
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~-----L~WIVVEd~~~~t~~va~lL~~sg-l~y~-HL~~~~p~~~~~~ 74 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVPN-----LHWLVVEDAPRRTPLTARLLRDTG-LNYT-HLHVETPRNYKLR 74 (253)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTSSS-----EEEEEEESSSSCCHHHHHHHHHHC-CEEE-EEECCCCHHHHCC
T ss_pred CCEEEEEeCCCCccchhHHHHHHhhhhccCCc-----eEEEEEeCCCCCCHHHHHHHHHcC-CceE-EeecCCCcccccc
Confidence 456667788999984 57788888877532 3556777865 467888888763 4333 33221 11100
Q ss_pred ----CCCChhHHHHHHHHHHHHHHHHhhhc-----CCcEEEEEccCceeChhHHHHHH
Q 012912 184 ----NPGELTAYYKIARHYKWALDNLFYKH-----NFSRVIILEDDMEIAPDFFDYFE 232 (453)
Q Consensus 184 ----~~~~~~~y~~IarHYk~aLs~vF~~~-----~~~~vIILEDDl~~SPDFf~Yf~ 232 (453)
....-.+ ....+.||.++=+++ ..+=|.|-+||..-+-.+|+=|.
T Consensus 75 ~~~~~~~~~rg----~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR 128 (253)
T 1v84_A 75 GDARDPRIPRG----TMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMR 128 (253)
T ss_dssp -------CCTT----HHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHH
T ss_pred ccccCccccch----HHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHh
Confidence 0000011 122345999986542 23567899999999988887654
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.69 E-value=1e+02 Score=23.07 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHH
Q 012912 59 QMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKD 97 (453)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
....|.+++..-..+..+|+.+.+.++.|+.++++++.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555666677777777777777777777654
No 30
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.92 E-value=30 Score=21.78 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=17.9
Q ss_pred hHhHHHHhhhhhHHhHHHHHHHHHH
Q 012912 74 IVALEDEKKRRDEECGQLKALVKDL 98 (453)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (453)
|.|||-++.-++++...+|+.+..|
T Consensus 2 idalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777766554
No 31
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.56 E-value=54 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 60 MRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
+..|...|..+..+|..|+.+++.++.+..++++.+.+|+++
T Consensus 14 ~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777778888888888888888888877777765
No 32
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=33.82 E-value=3.4e+02 Score=26.41 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCCceeeEEEEecCchH---HHHHHHHHHHhccCCCCCCccEEEeeCCC--ChhHHHHHhhcCCcceeeecccc-ccCCC
Q 012912 110 VQVPVAAVVIMACNRAN---YLERTINSVFKYQGSVASKYPLFVSQDGS--NPQVKSKALSYDKLTYMQHLDFE-PVHAD 183 (453)
Q Consensus 110 ~~~p~~PIlI~a~NRP~---~l~R~LesL~k~~~~~~~~~~LiVsqDG~--~~et~~vi~s~~~~~~i~~~~~~-~in~~ 183 (453)
...|.+=||=.||.||. +|.|+-..|+.+.+ ..=||.-|++ .++|.++++.-. +.+. |+..+ +.+..
T Consensus 18 ~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp~-----L~WIVVEd~~~~t~~va~lL~rsG-l~y~-HL~~~~p~~~~ 90 (281)
T 3cu0_A 18 GSHMTIYVVTPTYARLVQKAELVRLSQTLSLVPR-----LHWLLVEDAEGPTPLVSGLLAASG-LLFT-HLVVLTPKAQR 90 (281)
T ss_dssp ---CEEEEEEEECCSTTHHHHHHHHHHHHTTSSS-----EEEEEEESSSSCCHHHHHHHHHHC-SEEE-EEECCCC----
T ss_pred CCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCCc-----eEEEEEcCCCCCCHHHHHHHHHcC-CceE-EeccCCCcccc
Confidence 34566767888999984 56788888888642 3456677764 467888887663 4333 33221 11110
Q ss_pred ---------CCCChhHHHHHHHHHHHHHHHHh--------hhcC-----CcEEEEEccCceeChhHHHHH
Q 012912 184 ---------NPGELTAYYKIARHYKWALDNLF--------YKHN-----FSRVIILEDDMEIAPDFFDYF 231 (453)
Q Consensus 184 ---------~~~~~~~y~~IarHYk~aLs~vF--------~~~~-----~~~vIILEDDl~~SPDFf~Yf 231 (453)
.+.+. ...+.||.++= ++++ .+=|.|-+||..-+-.+|+=|
T Consensus 91 ~~~~dp~w~~~rg~-------~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdem 153 (281)
T 3cu0_A 91 LREGEPGWVHPRGV-------EQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM 153 (281)
T ss_dssp -------CCCCCSH-------HHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred ccccccccccchhH-------HHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHh
Confidence 01111 12355999986 3321 355788999999998888744
No 33
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.26 E-value=1.6e+02 Score=25.94 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=40.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 31 IQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
-.+.| .+|..||++-++.=.. -++.|.+-+..++..+...|+..+-.......+++.-.+|++
T Consensus 80 A~~~L----~eYn~rL~~E~~dR~~---L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 80 ACLLL----AEYNGRLAAELEDRRQ---LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 7888888876654322 233344444556666777777777777777777777776655
No 34
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=32.19 E-value=1e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHH
Q 012912 55 HCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKD 97 (453)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (453)
+-.+.+++..+++. .+|.+||.+-...++|..-++.++.+
T Consensus 4 q~l~kLKe~n~~L~---~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLA---TKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 44567888888883 45677888777777887777777664
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.37 E-value=1.1e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
...+..++|.|..-|-+|..|.+++..+.++..+++.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888999999999999998888887776665444
No 36
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=30.37 E-value=4.1e+02 Score=26.51 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=61.8
Q ss_pred ceeeEEEEecCchHHHHHHHHHHHhccCCCCCCccEEEeeCCCChh-HH----HHHhhcCCcceeeeccccccCCCCCCC
Q 012912 113 PVAAVVIMACNRANYLERTINSVFKYQGSVASKYPLFVSQDGSNPQ-VK----SKALSYDKLTYMQHLDFEPVHADNPGE 187 (453)
Q Consensus 113 p~~PIlI~a~NRP~~l~R~LesL~k~~~~~~~~~~LiVsqDG~~~e-t~----~vi~s~~~~~~i~~~~~~~in~~~~~~ 187 (453)
..++.+|.+++.++.+.|.|++|-. + ...++|..|...+. .. ++...|..+..+. ....+. -|
T Consensus 84 ~kiAflil~h~d~~~l~rll~~ly~--p----~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~--~~~~v~---WG- 151 (391)
T 2gak_A 84 FPIAYSIVVHHKIEMLDRLLRAIYM--P----QNFYCIHVDRKAEESFLAAVQGIASCFDNVFVAS--QLESVV---YA- 151 (391)
T ss_dssp SCEEEEEEECSCHHHHHHHHHHHCC--T----TSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECS--SCCCCC---TT-
T ss_pred CCEEEEEEecCCHHHHHHHHHHHhC--C----CCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEec--cCcccc---cC-
Confidence 4588999999999999999988843 2 23578888976432 12 2333344332221 111111 12
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc-CCcEEEEEccCceeChhHH
Q 012912 188 LTAYYKIARHYKWALDNLFYKH-NFSRVIILEDDMEIAPDFF 228 (453)
Q Consensus 188 ~~~y~~IarHYk~aLs~vF~~~-~~~~vIILEDDl~~SPDFf 228 (453)
++..++.+.+ ++..++... +.+++|.|=+.+.|--.+-
T Consensus 152 --g~S~v~A~l~-ll~~aL~~~~~w~yfilLSgsD~PLkt~~ 190 (391)
T 2gak_A 152 --SWTRVKADLN-CMKDLYRMNANWKYLINLCGMDFPIKTNL 190 (391)
T ss_dssp --SHHHHHHHHH-HHHHHHHHCSCCCEEEEEETTCEESSCHH
T ss_pred --CchHHHHHHH-HHHHHHhcCCCCCEEEEecCCCccccCHH
Confidence 3445666554 677777543 5899999998888865543
No 37
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=30.26 E-value=81 Score=28.73 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=14.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHh
Q 012912 13 PICDIRWLLLAAAVAFIFIQMRL 35 (453)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (453)
+.-.-|.-|+.+=++=|+-|--+
T Consensus 48 Lna~grLTLLLGnL~~IlG~~Sl 70 (201)
T 3u0c_A 48 LNASSQLTLLIGNLIQILGEKSL 70 (201)
T ss_dssp -CHHHHHHHHHHHHHHHHCSGGG
T ss_pred cCcchhHHHHHHHHHHHhcchHH
Confidence 33445777777777777665555
No 38
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.38 E-value=1.2e+02 Score=31.33 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhcc
Q 012912 31 IQMRLFATQSEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERRG 102 (453)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (453)
||.-+=+.|..--+++-.+.+.=..=..++..+..+|+.+...|..|+...+..+....+|++.+..|+.+-
T Consensus 64 ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 64 IQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444333333322234445556677778888888888888888888888888888887763
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.28 E-value=2.6e+02 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=12.3
Q ss_pred hhHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 73 RIVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
.|..+..++.+++-+...+...+++++
T Consensus 64 ~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 64 QVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.91 E-value=3.2e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 57 TNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
.+++-.|-+++...+.++..++++++.+.++...+..-+..||.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777777777777777777777766666666654
No 41
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.28 E-value=1.8e+02 Score=25.62 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHH-------hhhhhhHhHHHHhhhhhHHhHHHHH
Q 012912 57 TNQMRLLIDQIS-------MQQGRIVALEDEKKRRDEECGQLKA 93 (453)
Q Consensus 57 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (453)
.+++..||+.+= .|..+|..||++++..+++..+.-.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~ 113 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIK 113 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888763 3566688888877776666554433
No 42
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.07 E-value=2.1e+02 Score=24.49 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH-------hhhhhhHhHHHHhhhhhHHhHHHH
Q 012912 57 TNQMRLLIDQIS-------MQQGRIVALEDEKKRRDEECGQLK 92 (453)
Q Consensus 57 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 92 (453)
.+++-.||+.+= .|..+|..||++++..+++..+.-
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v 112 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888763 355667778777777666655443
No 43
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.63 E-value=2.2e+02 Score=24.56 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHh
Q 012912 124 RANYLERTINSVFK 137 (453)
Q Consensus 124 RP~~l~R~LesL~k 137 (453)
=++.++.+.+.|.+
T Consensus 83 d~~~lr~~~~~l~~ 96 (171)
T 2zvf_A 83 DMQALQKLAERLAE 96 (171)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 36789999999877
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.07 E-value=2.9e+02 Score=22.72 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 40 SEYADRVAAAVEAENHCTNQMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+....||-..++. -++.|..-|+++..+.+.+..+..+.+.+-.+-..+...++++.
T Consensus 35 s~tfarLc~~Vd~---t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 35 ATTFARLCQQVDM---TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp CCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455444432 23345555555555555555555555555555555555555553
No 45
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.83 E-value=94 Score=30.91 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHhhhhhHHhHHHHHHHHHHHhc
Q 012912 59 QMRLLIDQISMQQGRIVALEDEKKRRDEECGQLKALVKDLERR 101 (453)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (453)
..++|.++|...+..|...+.+...+++...++++.+++|+.+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666667777777777777777777777777654
No 46
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.43 E-value=3.8e+02 Score=22.84 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHh----hhhhhHhHHHHhhhhhHHhHHHHHHHHHHHh
Q 012912 54 NHCTNQMRLLIDQISM----QQGRIVALEDEKKRRDEECGQLKALVKDLER 100 (453)
Q Consensus 54 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (453)
+.|-.-+..|.+.+.. .|.++..|+.+.+.+.+++......++.|++
T Consensus 49 aTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 49 ATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6786666666555544 2334666666666666665555555555544
No 47
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=21.30 E-value=1.1e+02 Score=19.84 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=16.3
Q ss_pred hHhHHHHhhhhhHHhHHHHHHHHHHH
Q 012912 74 IVALEDEKKRRDEECGQLKALVKDLE 99 (453)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (453)
+.+||++...-+.+.-|+.+.+..||
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666666666666666666665
Done!