Query 012913
Match_columns 453
No_of_seqs 323 out of 2085
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 100.0 2.3E-29 7.8E-34 228.1 9.7 153 199-367 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.9 7.6E-24 2.6E-28 191.7 12.7 148 30-183 6-172 (174)
3 1ogq_A PGIP-2, polygalacturona 98.3 1.1E-06 3.7E-11 85.9 7.0 75 373-453 2-81 (313)
4 4ecn_A Leucine-rich repeat pro 98.2 2.6E-06 9E-11 94.6 10.5 69 373-453 265-352 (876)
5 4eco_A Uncharacterized protein 98.0 5.8E-06 2E-10 88.8 5.8 70 374-453 27-110 (636)
6 3rgz_A Protein brassinosteroid 97.8 9.9E-06 3.4E-10 88.9 4.4 67 374-451 9-80 (768)
7 4fcg_A Uncharacterized protein 93.9 0.004 1.4E-07 60.7 -2.9 73 374-453 24-109 (328)
8 2w3j_A Carbohydrate binding mo 93.6 0.72 2.5E-05 39.2 11.2 90 273-369 39-131 (145)
9 2w47_A Lipolytic enzyme, G-D-S 92.8 2.9 9.8E-05 35.2 13.8 94 86-183 38-132 (144)
10 2vzp_A Aocbm35, EXO-beta-D-glu 92.5 1.4 4.9E-05 36.2 11.2 85 273-364 39-127 (127)
11 2w47_A Lipolytic enzyme, G-D-S 92.1 2.1 7.3E-05 36.0 12.1 91 273-370 40-134 (144)
12 3e6j_A Variable lymphocyte rec 90.8 0.1 3.5E-06 47.7 2.4 45 409-453 20-69 (229)
13 2w87_A Esterase D, XYL-CBM35; 90.5 1.9 6.4E-05 36.3 10.0 87 273-366 39-130 (139)
14 2vzp_A Aocbm35, EXO-beta-D-glu 90.2 6.1 0.00021 32.2 12.9 90 86-179 37-127 (127)
15 2w3j_A Carbohydrate binding mo 89.6 6.6 0.00022 33.1 12.8 92 87-183 38-130 (145)
16 2wz8_A Cellulosome protein doc 85.5 11 0.00037 32.2 11.8 93 273-367 47-149 (156)
17 2w87_A Esterase D, XYL-CBM35; 83.6 9.9 0.00034 31.7 10.5 91 87-181 38-130 (139)
18 2wz8_A Cellulosome protein doc 77.8 17 0.00057 31.0 10.1 93 89-183 48-150 (156)
19 2o14_A Hypothetical protein YX 69.3 37 0.0013 33.1 11.6 79 90-184 78-157 (375)
20 2o6q_A Variable lymphocyte rec 60.4 3 0.0001 38.5 1.5 56 396-453 6-66 (270)
21 2ifg_A High affinity nerve gro 49.9 5.5 0.00019 38.0 1.5 27 426-452 58-84 (347)
22 1xku_A Decorin; proteoglycan, 49.4 8.9 0.0003 36.2 2.9 46 408-453 31-81 (330)
23 3rgz_A Protein brassinosteroid 49.0 5.4 0.00018 43.0 1.4 26 427-452 659-684 (768)
24 3zyi_A Leucine-rich repeat-con 48.6 9 0.00031 38.2 2.9 45 409-453 55-104 (452)
25 2ft3_A Biglycan; proteoglycan, 48.5 9.4 0.00032 36.1 2.9 46 408-453 33-83 (332)
26 4g8a_A TOLL-like receptor 4; l 46.0 7.6 0.00026 40.0 2.0 42 412-453 35-81 (635)
27 1w8a_A SLIT protein; signaling 44.2 7 0.00024 34.0 1.1 30 424-453 78-107 (192)
28 2z80_A TOLL-like receptor 2, v 43.9 8.1 0.00028 37.0 1.6 45 408-453 30-81 (353)
29 1w8a_A SLIT protein; signaling 43.2 8.2 0.00028 33.6 1.4 29 425-453 103-131 (192)
30 2r9u_A Variable lymphocyte rec 43.0 7.2 0.00024 33.5 1.0 29 425-453 58-86 (174)
31 1ogq_A PGIP-2, polygalacturona 42.2 8.3 0.00028 36.4 1.4 27 425-452 269-295 (313)
32 3g39_A Variable lymphocyte rec 41.6 7.4 0.00025 33.2 0.8 29 425-453 55-83 (170)
33 4fcg_A Uncharacterized protein 36.4 10 0.00035 36.1 1.0 29 425-453 278-306 (328)
34 2o14_A Hypothetical protein YX 34.2 1.8E+02 0.0062 28.0 9.8 77 274-368 77-156 (375)
35 2v70_A SLIT-2, SLIT homolog 2 33.1 14 0.00048 32.8 1.3 29 425-453 130-158 (220)
36 2v9t_B SLIT homolog 2 protein 32.9 15 0.00051 32.6 1.5 29 425-453 81-109 (220)
37 3zyj_A Leucine-rich repeat-con 32.4 24 0.00083 34.8 3.1 45 409-453 44-93 (440)
38 2xot_A Amphoterin-induced prot 32.0 27 0.00091 33.5 3.2 46 408-453 18-69 (361)
39 3rw6_A Nuclear RNA export fact 31.6 8.9 0.0003 35.9 -0.3 14 426-439 198-211 (267)
40 2je0_A Acidic leucine-rich nuc 31.0 7.8 0.00027 31.8 -0.8 29 425-453 89-118 (149)
41 2wfh_A SLIT homolog 2 protein 30.9 15 0.00053 31.9 1.1 29 425-453 103-131 (193)
42 3rfe_A Platelet glycoprotein I 30.8 23 0.00077 28.9 2.1 43 411-453 11-60 (130)
43 2ifg_A High affinity nerve gro 30.7 16 0.00055 34.7 1.3 29 425-453 32-61 (347)
44 3g39_A Variable lymphocyte rec 30.3 16 0.00053 31.0 1.1 29 425-453 79-107 (170)
45 2wfh_A SLIT homolog 2 protein 30.1 16 0.00054 31.8 1.1 30 424-453 78-107 (193)
46 4ezg_A Putative uncharacterize 29.3 15 0.00052 31.8 0.8 29 425-453 113-141 (197)
47 2r9u_A Variable lymphocyte rec 28.7 17 0.00059 31.0 1.1 30 424-453 81-110 (174)
48 4eco_A Uncharacterized protein 28.6 16 0.00054 38.4 0.9 25 427-451 252-276 (636)
49 3oja_A Leucine-rich immune mol 27.9 21 0.00071 36.1 1.6 30 424-453 144-174 (487)
50 2v70_A SLIT-2, SLIT homolog 2 27.4 18 0.00061 32.1 0.9 17 425-441 154-170 (220)
51 3cvr_A Invasion plasmid antige 27.3 6.1 0.00021 41.3 -2.6 38 399-444 40-78 (571)
52 2ell_A Acidic leucine-rich nuc 27.1 12 0.0004 31.4 -0.3 29 425-453 96-125 (168)
53 2o6r_A Variable lymphocyte rec 27.0 19 0.00066 30.3 1.1 29 425-453 101-129 (177)
54 2v9t_B SLIT homolog 2 protein 25.3 21 0.00073 31.6 1.1 30 424-453 128-157 (220)
55 2cdp_A Beta-agarase 1; carbohy 25.0 3E+02 0.01 22.9 11.3 90 86-181 65-160 (160)
56 4g8a_A TOLL-like receptor 4; l 24.2 25 0.00084 36.0 1.4 27 426-452 496-522 (635)
57 3m19_A Variable lymphocyte rec 23.8 24 0.00084 31.7 1.2 30 424-453 59-88 (251)
58 1wwl_A Monocyte differentiatio 23.6 16 0.00056 34.2 -0.1 27 425-452 122-153 (312)
59 3m19_A Variable lymphocyte rec 23.6 24 0.00083 31.7 1.1 30 424-453 83-112 (251)
60 4ezg_A Putative uncharacterize 23.5 16 0.00053 31.7 -0.3 29 424-453 136-164 (197)
61 4d8m_A Pesticidal crystal prot 23.2 1.8E+02 0.0061 30.2 7.5 88 90-181 488-584 (587)
62 4ecn_A Leucine-rich repeat pro 22.7 23 0.0008 38.9 0.9 29 425-453 492-520 (876)
63 4glp_A Monocyte differentiatio 22.6 34 0.0012 31.8 2.0 30 424-453 117-150 (310)
64 3oja_A Leucine-rich immune mol 22.1 29 0.00098 35.0 1.4 27 425-453 59-85 (487)
65 1dce_A Protein (RAB geranylger 21.9 26 0.0009 36.3 1.1 29 424-453 463-491 (567)
66 2ft3_A Biglycan; proteoglycan, 21.4 31 0.0011 32.4 1.4 28 426-453 80-107 (332)
67 2o6r_A Variable lymphocyte rec 21.0 27 0.00094 29.3 0.8 30 424-453 76-105 (177)
68 1ozn_A Reticulon 4 receptor; N 21.0 32 0.0011 31.4 1.4 29 425-453 202-230 (285)
69 1xku_A Decorin; proteoglycan, 20.3 31 0.0011 32.3 1.1 27 426-452 78-104 (330)
70 3e6j_A Variable lymphocyte rec 20.1 31 0.0011 30.6 1.1 29 424-453 112-140 (229)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.96 E-value=2.3e-29 Score=228.08 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=117.3
Q ss_pred eeeeeccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCeeEeeccccccCCCCCCCCChHHHHHhhhccCCceEEE
Q 012913 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (453)
Q Consensus 199 ~~~~Rin~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~l~~~ 278 (453)
++++||||||.. + .|..+|+|.+|..|...+... .... .+... ..+.+|+.||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~----~---~d~~gr~w~~D~~~~~~g~~~---~~~~--~~~~~--~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGES----H---VDVHGIHYRKDPLEGRVGRAS---DYGM--KLPIL--RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSS----E---EETTTEEECSSCSSTTCCCCC---CCCT--TSCCS--SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCC----c---cCCCCCEEcCCcCcccCCccc---cccc--ceEec--ccCCCCchhhhhhccCCCCeEEE
Confidence 578999999864 2 356899999998764211110 0011 11111 11226889999999987789999
Q ss_pred EEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEe-ecccceeeccCCcceeEEEEEEEe------------cCCce
Q 012913 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN-VTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (453)
Q Consensus 279 f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~-~~~~di~~~~g~~~~~~~~~~v~~------------~~~g~ 345 (453)
|+++++|.|+|||||||+.. .+.++|+|||+|||+. +++||+..++|+.+|++++|.+.. ..+|+
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998899999999999986 4579999999999997 789999998887788888887652 35678
Q ss_pred EEEEEeecC-CCcceeEEeeeec
Q 012913 346 LTVKLVPVV-GAALISGLENYAL 367 (453)
Q Consensus 346 l~i~~~~~~-~sp~lNaiEI~~~ 367 (453)
|+|+|.|.. ..|+||||||++.
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEESS
T ss_pred EEEEEeccCCCCcEEEEEEEEeC
Confidence 999999864 4599999999985
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.90 E-value=7.6e-24 Score=191.73 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=112.8
Q ss_pred ccEEEecCCCCCccCCCCCeEeeCCCCccCCCccc------ccCCCCCCCcccceeeeeCCCCCCCceEEeecCCCccEE
Q 012913 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSI------VSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (453)
Q Consensus 30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~------~~~~~~~~~~~y~t~R~F~~~~g~~~cY~lpv~~~g~yl 103 (453)
..++||||++. .+|..+|+|.+|+.+...|.... +......+..+|+|+|+|+. ..+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~-~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGES-HVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSS-EEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred EEEEEECCCCC-ccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence 35899999976 35678999999865543332210 11111123568999999985 489999998889999
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEe-------------cCCeeEEEEeecCCC
Q 012913 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (453)
Q Consensus 104 vRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~E~i~~~-------------~~~~l~vcf~~~~~~ 170 (453)
|||||.+-.+.. ...+.|||++++.+++++|+++.+++...++++|+.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~-~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQ-SQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCC-SSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCC-CCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 999999776655 357999999999999999998776655556778887653 567899999986567
Q ss_pred CceeeeeEeEecC
Q 012913 171 PPVIASLEVQQID 183 (453)
Q Consensus 171 ~pfIs~iEl~~l~ 183 (453)
.||||||||++.+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999999753
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.26 E-value=1.1e-06 Score=85.87 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=59.8
Q ss_pred CCChhHHHHHHHHHHHcCCCC-CCCCCC--CCCCCCCCCCceeEEeCCCCCCCcceEEEEEeCCCCcee--ecCccccCC
Q 012913 373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL 447 (453)
Q Consensus 373 ~t~~~d~~aL~~ik~~~~~~~-~~~W~g--dpC~p~~~~~W~Gi~C~~~~~~~~~~v~~L~Ls~~~LsG--~ip~~l~~L 447 (453)
.|.++|..||+++|+.+.++. +.+|.. +||. +.|.||.|+... ..++|+.|+|++++++| .+|+.|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCC
Confidence 467889999999999997653 668963 5662 249999997421 12589999999999999 999999999
Q ss_pred CCCcCC
Q 012913 448 SNLVNL 453 (453)
Q Consensus 448 ~~L~~L 453 (453)
+.|+.|
T Consensus 76 ~~L~~L 81 (313)
T 1ogq_A 76 PYLNFL 81 (313)
T ss_dssp TTCSEE
T ss_pred CCCCee
Confidence 999865
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=2.6e-06 Score=94.63 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=57.6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCCCCCC-------CCCCCCCCCCc------------eeEEeCCCCCCCcceEEEEEeCC
Q 012913 373 STVPEQVIAMRALKESLRVPDRMGWNG-------DPCAPTNWDAW------------EGITCHPNKDETAVVISQIDLGS 433 (453)
Q Consensus 373 ~t~~~d~~aL~~ik~~~~~~~~~~W~g-------dpC~p~~~~~W------------~Gi~C~~~~~~~~~~v~~L~Ls~ 433 (453)
.+...|..||++||+.+..+ +|+. +||. |.| .||.|+. .+||+.|+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~----C~W~~~~~~~~w~~~~GV~C~~-----~~~V~~L~Ls~ 332 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHS----LNWNFNKELDMWGDQPGVDLDN-----NGRVTGLSLAG 332 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCC----CSCCCSSCGGGTTCCTTEEECT-----TSCEEEEECTT
T ss_pred ccchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCc----cccccccccccccCcCceEecC-----CCCEEEEECcc
Confidence 34567999999999999764 7842 4631 489 9999975 26899999999
Q ss_pred CCceeecCccccCCCCCcCC
Q 012913 434 QGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 434 ~~LsG~ip~~l~~L~~L~~L 453 (453)
++|+|.||+.|++|++|+.|
T Consensus 333 ~~L~G~ip~~l~~L~~L~~L 352 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVL 352 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEE
T ss_pred CCCCCcCchHHhccccceEe
Confidence 99999999999999999875
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.96 E-value=5.8e-06 Score=88.78 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHcCCCC----------CCCCCC-CCCCCCCCCCc---eeEEeCCCCCCCcceEEEEEeCCCCceee
Q 012913 374 TVPEQVIAMRALKESLRVPD----------RMGWNG-DPCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY 439 (453)
Q Consensus 374 t~~~d~~aL~~ik~~~~~~~----------~~~W~g-dpC~p~~~~~W---~Gi~C~~~~~~~~~~v~~L~Ls~~~LsG~ 439 (453)
....|..||.++++.+..+. ..+|+. .+| |.| .||.|+. .++|+.|+|++++|+|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~-----~~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNS-----NGRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECT-----TCCEEEEECTTSCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcC-----CCCEEEEEecCcccCCc
Confidence 34579999999999875432 126853 233 489 9999975 26899999999999999
Q ss_pred cCccccCCCCCcCC
Q 012913 440 ISDKISLLSNLVNL 453 (453)
Q Consensus 440 ip~~l~~L~~L~~L 453 (453)
+|+.|++|++|+.|
T Consensus 97 lp~~l~~L~~L~~L 110 (636)
T 4eco_A 97 VPDAIGQLTELEVL 110 (636)
T ss_dssp ECGGGGGCTTCCEE
T ss_pred CChHHhcCccceEE
Confidence 99999999999875
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.81 E-value=9.9e-06 Score=88.86 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=53.0
Q ss_pred CChhHHHHHHHHHHHcCCC-CCCCCC-CCCCCCCCCCCceeEEeCCCCCCCcceEEEEEeCCCCceee---cCccccCCC
Q 012913 374 TVPEQVIAMRALKESLRVP-DRMGWN-GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY---ISDKISLLS 448 (453)
Q Consensus 374 t~~~d~~aL~~ik~~~~~~-~~~~W~-gdpC~p~~~~~W~Gi~C~~~~~~~~~~v~~L~Ls~~~LsG~---ip~~l~~L~ 448 (453)
...+|.+||++||+.+.++ .+.+|+ +..| |.|.||.|+. ++|+.|+|++++|+|. ||+.|++|+
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~-----C~w~gv~C~~------~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNP-----CTFDGVTCRD------DKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG-----GGSTTEEEET------TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCCCCC-----cCCcceEECC------CcEEEEECCCCCcCCccCccChhHhccC
Confidence 3567899999999999765 377996 3344 4999999972 6899999999999998 887666665
Q ss_pred CCc
Q 012913 449 NLV 451 (453)
Q Consensus 449 ~L~ 451 (453)
.|+
T Consensus 78 ~L~ 80 (768)
T 3rgz_A 78 GLE 80 (768)
T ss_dssp TCC
T ss_pred ccc
Confidence 554
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=93.90 E-value=0.004 Score=60.71 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHHHHcC-CCC--CCCCC----C--CCCCCCCCCCceeEEeCCCC----CCCcceEEEEEeCCCCceeec
Q 012913 374 TVPEQVIAMRALKESLR-VPD--RMGWN----G--DPCAPTNWDAWEGITCHPNK----DETAVVISQIDLGSQGLKGYI 440 (453)
Q Consensus 374 t~~~d~~aL~~ik~~~~-~~~--~~~W~----g--dpC~p~~~~~W~Gi~C~~~~----~~~~~~v~~L~Ls~~~LsG~i 440 (453)
.-.++..||++||+.+. ++. +..|. + +.| .|.|+.|.... .....+|+.|+|++++++ .|
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~------~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE------TRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC------CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc------ccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 34568899999999873 321 34572 2 344 89999994100 001245777888888887 77
Q ss_pred CccccCCCCCcCC
Q 012913 441 SDKISLLSNLVNL 453 (453)
Q Consensus 441 p~~l~~L~~L~~L 453 (453)
|+.+++|+.|+.|
T Consensus 97 p~~l~~l~~L~~L 109 (328)
T 4fcg_A 97 PDQAFRLSHLQHM 109 (328)
T ss_dssp CSCGGGGTTCSEE
T ss_pred ChhhhhCCCCCEE
Confidence 7777777777654
No 8
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=93.58 E-value=0.72 Score=39.22 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=55.9
Q ss_pred CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEeecccceeeccCC-cceeEEEEEEEecCCceEEEEEe
Q 012913 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKLV 351 (453)
Q Consensus 273 ~~l~~~f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~~~~~di~~~~g~-~~~~~~~~~v~~~~~g~l~i~~~ 351 (453)
..++|.+.++..|.|.+.+.++.- ....|.++|+|||.....+.+.. .|. ..-......+. ...|.-+|+|.
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~~~v~~p~-Tg~W~~w~t~~~~v~-L~aG~ntI~l~ 111 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQIKTLDFPT-NSNWTQWQTVNVDIP-LKAGTNSIKLV 111 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEECCCC-CSCTTSCEEEEEEEE-ECSEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEeeEEEecC-CCCCCeeEEEEEEEE-ECCCceEEEEE
Confidence 458999888778999999999831 23579999999998643333322 232 11111111222 34555566666
Q ss_pred ecC--CCcceeEEeeeeccC
Q 012913 352 PVV--GAALISGLENYALVP 369 (453)
Q Consensus 352 ~~~--~sp~lNaiEI~~~~~ 369 (453)
... +.|-|+-|+|-+...
T Consensus 112 ~~~~~g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETADGLANIDSIRVTGNGI 131 (145)
T ss_dssp ECSTTCCCEEEEEEECSTTE
T ss_pred EecCcCCEEEEEEEEEcCCC
Confidence 633 348899999876544
No 9
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=92.75 E-value=2.9 Score=35.20 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=57.8
Q ss_pred CCCCceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEecCCeeEEEEe
Q 012913 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (453)
Q Consensus 86 ~g~~~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~ 165 (453)
.|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||..+........+..-.+.....+-+..+.|.=.|.|.
T Consensus 38 ~g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~ 113 (144)
T 2w47_A 38 VGGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRAT 113 (144)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEE
Confidence 3556788988878899999998875432 247899999997643211111111111111223334456666566666
Q ss_pred ec-CCCCceeeeeEeEecC
Q 012913 166 SF-ATDPPVIASLEVQQID 183 (453)
Q Consensus 166 ~~-~~~~pfIs~iEl~~l~ 183 (453)
.. +.+.|.|.-|+|.+.+
T Consensus 114 ~~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 114 AIASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp ECSTTCCCEEEEEEEEECT
T ss_pred EeCCCCCEEEeEEEEEeCC
Confidence 43 3467999999998754
No 10
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=92.49 E-value=1.4 Score=36.16 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=51.8
Q ss_pred CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEee-cccceeeccCC-cceeEEEEEEEecCCceEEEEE
Q 012913 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV-TRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKL 350 (453)
Q Consensus 273 ~~l~~~f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~~-~~~di~~~~g~-~~~~~~~~~v~~~~~g~l~i~~ 350 (453)
..++|.+.++..|.|.+.++++-- ....|.++|+|||... ..+.+. ..+. ..-......+. ...|.-+|+|
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~-----~~~~~~~~l~VnG~~~~~~v~~p-~tg~W~~w~~~~~~v~-L~aG~ntI~l 111 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANG-----TTTSRPLDFSVNGSISASGVAFG-STGTWPAWTTKTVRVT-LAAGVNKIKA 111 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCC-CCSSTTCCEEEEEEEE-ECSEEEEEEE
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcC-----CCCCeEEEEEECCEEeeeEEEec-CCCCCCceEEEEEEEE-ECCCceEEEE
Confidence 458999888778999999999852 1246889999999863 223332 2232 11111112222 3456666777
Q ss_pred eecC--CCcceeEEee
Q 012913 351 VPVV--GAALISGLEN 364 (453)
Q Consensus 351 ~~~~--~sp~lNaiEI 364 (453)
.... ..|-|+-|+|
T Consensus 112 ~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 112 VATTANGGPNVDKITL 127 (127)
T ss_dssp EECSTTCCCEEEEEEC
T ss_pred EEeCCCCCeEEEEEEC
Confidence 6643 3377777765
No 11
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=92.07 E-value=2.1 Score=36.00 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=56.5
Q ss_pred CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEe-ecccceeeccCC-cceeEEEEEEEecCCceEEEEE
Q 012913 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN-VTRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKL 350 (453)
Q Consensus 273 ~~l~~~f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~-~~~~di~~~~g~-~~~~~~~~~v~~~~~g~l~i~~ 350 (453)
..++|.+.++..|.|.|.+.++-- ....|.++|+|||.. ...+.+.. .+. ..-......+. ...|.-+|+|
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~~~~v~-L~aG~ntI~l 112 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEAGIVAN-LNQGNNVIRA 112 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEEEEEEE-ECSEEEEEEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEEEEEEE-ECCCccEEEE
Confidence 458999888778999999999842 224799999999985 33443322 232 11111111222 3455556666
Q ss_pred eecC--CCcceeEEeeeeccCC
Q 012913 351 VPVV--GAALISGLENYALVPN 370 (453)
Q Consensus 351 ~~~~--~sp~lNaiEI~~~~~~ 370 (453)
.... +.+-|+-|+|.+....
T Consensus 113 ~~~~~~g~~niD~i~v~~~~~~ 134 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFSANAF 134 (144)
T ss_dssp EECSTTCCCEEEEEEEEECTTS
T ss_pred EEeCCCCCEEEeEEEEEeCCCC
Confidence 6432 3499999999875443
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=90.76 E-value=0.1 Score=47.69 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=34.0
Q ss_pred CceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 409 AWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 409 ~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.|.+|.|+..+.. .+..+..|+|+++.+++..|..|.+|++|+.|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 69 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKEL 69 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEE
Confidence 8999999753311 12356789999999998888888888888764
No 13
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=90.52 E-value=1.9 Score=36.26 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=53.7
Q ss_pred CceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEee--cccceeeccCCc-ceeEEEEEEEecCCceEEEE
Q 012913 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV--TRVDIFNSVGSF-AAYSWHYVAKNLSSTELTVK 349 (453)
Q Consensus 273 ~~l~~~f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~~--~~~di~~~~g~~-~~~~~~~~v~~~~~g~l~i~ 349 (453)
..++|...++..|.|.|.+.++-- ....|..+|+|||... ..+.+.. +|.. .-......+. ...|.-+|+
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~g~~~v~~p~-Tg~W~~w~t~~~~v~-L~aG~ntI~ 111 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSNGNYTVSLPT-TGAWTTWQTATIDVD-LVQGNNIVQ 111 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTTCEEEECCCC-CSSTTCCEEEEEEEE-ECSEEEEEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEcceeEEEecC-CCCCCccEEEEEEEE-ECCCceEEE
Confidence 358898888778999999999752 1236899999999753 3444322 2321 1111111222 345555666
Q ss_pred EeecCC--CcceeEEeeee
Q 012913 350 LVPVVG--AALISGLENYA 366 (453)
Q Consensus 350 ~~~~~~--sp~lNaiEI~~ 366 (453)
|....+ .|-|+-|+|-+
T Consensus 112 l~~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTCCCEEEEEEEES
T ss_pred EEEcCCCCCEEEEEEEEec
Confidence 666533 48899998864
No 14
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=90.24 E-value=6.1 Score=32.23 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=53.7
Q ss_pred CCCCceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEecCCeeEEEEe
Q 012913 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (453)
Q Consensus 86 ~g~~~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~ 165 (453)
.|..-.|++.+.+.|.|.|++.+.-+. + ..+.++|++||...........+..-.......+.+..+.|.=.|.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~ 112 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV 112 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence 366678999887889999999988543 1 347899999997753311111111111111122334456666556665
Q ss_pred ec-CCCCceeeeeEe
Q 012913 166 SF-ATDPPVIASLEV 179 (453)
Q Consensus 166 ~~-~~~~pfIs~iEl 179 (453)
.. +.+.|-|..|+|
T Consensus 113 ~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 113 ATTANGGPNVDKITL 127 (127)
T ss_dssp ECSTTCCCEEEEEEC
T ss_pred EeCCCCCeEEEEEEC
Confidence 43 345678877764
No 15
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=89.64 E-value=6.6 Score=33.09 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=56.3
Q ss_pred CCCceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEecCCeeEEEEee
Q 012913 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (453)
Q Consensus 87 g~~~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~ 166 (453)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-... ...+..-.......+.+..+.|.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~v~-~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKTLD-FPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEC-CCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeEEE-ecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 555688888878899999998874432 347899999997653311 111111011111233334566665666665
Q ss_pred c-CCCCceeeeeEeEecC
Q 012913 167 F-ATDPPVIASLEVQQID 183 (453)
Q Consensus 167 ~-~~~~pfIs~iEl~~l~ 183 (453)
. +.+.|-|..|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 3467999999987654
No 16
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=85.48 E-value=11 Score=32.22 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=55.1
Q ss_pred CceEEE-EEeCCCCcEEEEEEEEeeecc-----cCCCceEEEEEEECCEeecccceeeccCC-cceeEEEEEEEecCCce
Q 012913 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSS-----VTKAGQRVFDILVNDKNVTRVDIFNSVGS-FAAYSWHYVAKNLSSTE 345 (453)
Q Consensus 273 ~~l~~~-f~v~~~~~Y~V~LhFaEi~~~-----~~~~~~R~FdV~ing~~~~~~di~~~~g~-~~~~~~~~~v~~~~~g~ 345 (453)
..++|. ..++..|.|.|.+.|+.-... ......|..+|+|||.....+... .++. ...-.....+. ...|.
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp-~Tg~W~~~~~~tv~V~-L~aG~ 124 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF-NTRGWNTYRTDIIDVY-LNAGN 124 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC-CCSSTTCCEEEEEEEE-ECSEE
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC-CCCCCCcceEEEEEEE-ECCCc
Confidence 358888 888778999999999864210 001247999999999752223322 2232 22111112222 34555
Q ss_pred EEEEEeec--CC-CcceeEEeeeec
Q 012913 346 LTVKLVPV--VG-AALISGLENYAL 367 (453)
Q Consensus 346 l~i~~~~~--~~-sp~lNaiEI~~~ 367 (453)
=+|+|... .+ .|-|=.|+|.+.
T Consensus 125 NtI~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 125 NTIRFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEEEEECCSTTCBCCEEEEEEEEC-
T ss_pred eEEEEEecCCCCCCcEEEEEEEecc
Confidence 67777765 22 288888888654
No 17
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=83.63 E-value=9.9 Score=31.68 Aligned_cols=91 Identities=14% Similarity=0.014 Sum_probs=53.5
Q ss_pred CCCceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEE-EecCCCCCcccCCCceEEEEEEEecCCeeEEEEe
Q 012913 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (453)
Q Consensus 87 g~~~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~-l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~ 165 (453)
|..-.|++.+.+.|.|.|++.+.-+. + ..+..+|++||... ........+..-......++-+..+.|.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~--~--~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG--T--ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS--S--SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC--C--CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 55567888887789999999887543 1 24789999987542 0101111111111111223334456666566666
Q ss_pred ecC-CCCceeeeeEeEe
Q 012913 166 SFA-TDPPVIASLEVQQ 181 (453)
Q Consensus 166 ~~~-~~~pfIs~iEl~~ 181 (453)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 543 4679999999875
No 18
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=77.80 E-value=17 Score=31.02 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.0
Q ss_pred CceEE-eecCCCccEEEEEEeecCCC------CCCCCCCcEEEEECCEEEEe-cCCCCCcccCCCceEEEEEEEecCCee
Q 012913 89 KNCYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRSPWPEGLARDGAYSDLFAFVKDGEL 160 (453)
Q Consensus 89 ~~cY~-lpv~~~g~ylvRl~F~y~ny------d~~~~~~~Fdv~~~~~~~l~-~~~~~~~~~~~~~~~~E~i~~~~~~~l 160 (453)
.-.++ +.+.+.|.|.|++.|.-+.. ......+..+|.+||...-. .|. .+..-.......+.+..+.|.=
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp--~Tg~W~~~~~~tv~V~L~aG~N 125 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF--NTRGWNTYRTDIIDVYLNAGNN 125 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC--CCSSTTCCEEEEEEEEECSEEE
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC--CCCCCCcceEEEEEEEECCCce
Confidence 34666 77767899999999975532 11113578999998753111 121 1110011112333445677777
Q ss_pred EEEEeec--CCCCceeeeeEeEecC
Q 012913 161 DLCFYSF--ATDPPVIASLEVQQID 183 (453)
Q Consensus 161 ~vcf~~~--~~~~pfIs~iEl~~l~ 183 (453)
.|.|... ....|-|-.|+|.++.
T Consensus 126 tI~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 126 TIRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEEecCCCCCCcEEEEEEEeccc
Confidence 7888876 3346899999987653
No 19
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=69.30 E-value=37 Score=33.13 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=52.4
Q ss_pred ceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEecCCeeEEEEeecCC
Q 012913 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (453)
Q Consensus 90 ~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~ 169 (453)
+.+.+.+ ++|.|.|.+.+.-+ ..=.|...+...+. .. .......++.+.+.++.+.+.+.....
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 5666676 79999999988743 22334455554333 11 123345677778889999998774433
Q ss_pred -CCceeeeeEeEecCC
Q 012913 170 -DPPVIASLEVQQIDP 184 (453)
Q Consensus 170 -~~pfIs~iEl~~l~~ 184 (453)
..+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 368999999998754
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=60.42 E-value=3 Score=38.51 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCCceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 396 GWNGDPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 396 ~W~gdpC~p~~~~~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.|.|..|.... .|..+.|+..+-. -+..++.|+|+++++++..+..|.+|++|+.|
T Consensus 6 ~~~~~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L 66 (270)
T 2o6q_A 6 KKDGGVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL 66 (270)
T ss_dssp GGGTCSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEE
T ss_pred CCCCCCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEE
Confidence 45555553211 4667778643211 11246788999988886666678888877754
No 21
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=49.88 E-value=5.5 Score=38.03 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=14.7
Q ss_pred EEEEEeCCCCceeecCccccCCCCCcC
Q 012913 426 ISQIDLGSQGLKGYISDKISLLSNLVN 452 (453)
Q Consensus 426 v~~L~Ls~~~LsG~ip~~l~~L~~L~~ 452 (453)
+..|+|++|.|+|..|..|++|++|+.
T Consensus 58 L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 58 LRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CCEEECCCCccceeCHHHhcCCcCCCE
Confidence 444555555555555555555555554
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=49.43 E-value=8.9 Score=36.25 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 408 ~~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
|.|..+.|+..+-. -+..++.|+|+++++++..+..|++|++|+.|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L 81 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTL 81 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEE
Confidence 57999999743211 11346678888888877666667777777654
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=49.00 E-value=5.4 Score=43.04 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=13.2
Q ss_pred EEEEeCCCCceeecCccccCCCCCcC
Q 012913 427 SQIDLGSQGLKGYISDKISLLSNLVN 452 (453)
Q Consensus 427 ~~L~Ls~~~LsG~ip~~l~~L~~L~~ 452 (453)
..|+|++|.++|.||..|++|+.|+.
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCE
Confidence 34555555555555555555555443
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=48.57 E-value=9 Score=38.18 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=31.7
Q ss_pred CceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 409 AWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 409 ~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.|..+.|...+-. -+..++.|+|+++++++..+..|.+|++|+.|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L 104 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEE
Confidence 3678999753311 12356788899998888878888888888764
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=48.48 E-value=9.4 Score=36.14 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 408 ~~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
|.|..+.|+..+-. ....++.|+|+++++++..|..|.+|++|+.|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L 83 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYAL 83 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEE
Confidence 47999999753211 11346778888888887666677777777654
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=46.05 E-value=7.6 Score=39.99 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=29.9
Q ss_pred eEEeCCCCC--C---CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 412 GITCHPNKD--E---TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 412 Gi~C~~~~~--~---~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
-+.|+..+- . -+..++.|+|++|.|++-.+..|.+|++|+.|
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L 81 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 81 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEE
Confidence 578975431 1 12357889999999987666778888888765
No 27
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=44.20 E-value=7 Score=33.98 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|.|++..+..|..|++|+.|
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 357789999999999888888888888764
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=43.95 E-value=8.1 Score=36.98 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCceeEEeCCCCCC-------CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 408 DAWEGITCHPNKDE-------TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 408 ~~W~Gi~C~~~~~~-------~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
|.|.|+ |+..+.. -...++.|+|+++++++..+..|.++++|+.|
T Consensus 30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 81 (353)
T 2z80_A 30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQAL 81 (353)
T ss_dssp ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEE
Confidence 379988 6432210 11356778888888877555567777777654
No 29
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=43.16 E-value=8.2 Score=33.55 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.9
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++.+|..+..|++|+.|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 46789999999999999999999888764
No 30
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=42.96 E-value=7.2 Score=33.49 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++-.+..|.+|++|+.|
T Consensus 58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 46778888888887444446778777754
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=42.18 E-value=8.3 Score=36.41 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVN 452 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~ 452 (453)
.+..|+|++|.++|.+|.. ++|+.|+.
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~ 295 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDV 295 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCG
T ss_pred CCCEEECcCCcccccCCCC-ccccccCh
Confidence 4667888888888888775 66666654
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=41.60 E-value=7.4 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++..+..|..|++|+.|
T Consensus 55 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 46678888888885555556777777754
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=36.45 E-value=10 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|+++++.|.+|..|++|+.|+.|
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 46789999999999999999999998753
No 34
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=34.15 E-value=1.8e+02 Score=28.03 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=48.6
Q ss_pred ceEEEEEeCCCCcEEEEEEEEeeecccCCCceEEEEEEECCEe-ecccceeeccCCcceeEEEEEEEecCCceEEEEEee
Q 012913 274 AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN-VTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVP 352 (453)
Q Consensus 274 ~l~~~f~v~~~~~Y~V~LhFaEi~~~~~~~~~R~FdV~ing~~-~~~~di~~~~g~~~~~~~~~~v~~~~~g~l~i~~~~ 352 (453)
+.+|..++ |+|.|.|.+.+.+-. | -.|..++.. +. ...|..+ ...|.+. ..++++++.+.+
T Consensus 77 ~~~f~v~~-~~g~Y~v~v~~g~~~--------~-~~v~~e~~~~~~-----~~~g~~~--~~~~~v~-~~~g~~~l~~~~ 138 (375)
T 2o14_A 77 NNTFNVDL-PNGLYEVKVTLGNTA--------R-ASVAAEGVFQVI-----NMTGDGA--EDTFQIP-VTDGQLNLLVTE 138 (375)
T ss_dssp SCCEEEEC-CSEEEEEEEEESSCS--------E-EEEEETTEEEEE-----EEESTTC--EEEEEEE-ECSSEEEEEEEE
T ss_pred ceEEEEEc-CCCceEEEEEecCCc--------c-eEEEEcceEEEE-----ecCCCcE--EEEEEEE-eeCCeEEEeeee
Confidence 46777777 478999999987631 1 235556653 22 2233332 2234444 467899999886
Q ss_pred cC--CCcceeEEeeeecc
Q 012913 353 VV--GAALISGLENYALV 368 (453)
Q Consensus 353 ~~--~sp~lNaiEI~~~~ 368 (453)
.. ..+.|++|||....
T Consensus 139 ~~~g~~~~l~~i~v~~~~ 156 (375)
T 2o14_A 139 GKAGTAFTLSALKIKKLS 156 (375)
T ss_dssp SSTTSCCEEEEEEEEEEE
T ss_pred ccCCCCcccceEEEeccC
Confidence 53 34899999998653
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=33.08 E-value=14 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.7
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++..|..|..|++|+.|
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 46789999999999888889999888764
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=32.87 E-value=15 Score=32.62 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++-.+..|..|++|+.|
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 46678888888874333346777777654
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=32.41 E-value=24 Score=34.77 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=28.7
Q ss_pred CceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 409 AWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 409 ~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.|..+.|...+-. -+..+..|+|+++++++..+..|.+|++|+.|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEE
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEE
Confidence 3678999653211 11235567888888877777777777777654
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=32.00 E-value=27 Score=33.54 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCceeEEeCCCCCC-----CcceEEEEEeCCCCceeecCcccc-CCCCCcCC
Q 012913 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKIS-LLSNLVNL 453 (453)
Q Consensus 408 ~~W~Gi~C~~~~~~-----~~~~v~~L~Ls~~~LsG~ip~~l~-~L~~L~~L 453 (453)
|.|.-+.|+..+-. -+..++.|+|++|+|++..+..+. +|++|+.|
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L 69 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL 69 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEE
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEE
Confidence 56888999653311 112355688888888776665555 66666653
No 39
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=31.62 E-value=8.9 Score=35.89 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=8.1
Q ss_pred EEEEEeCCCCceee
Q 012913 426 ISQIDLGSQGLKGY 439 (453)
Q Consensus 426 v~~L~Ls~~~LsG~ 439 (453)
+..|+|++|.|++.
T Consensus 198 L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 198 LKILNLSGNELKSE 211 (267)
T ss_dssp CCEEECTTSCCCSG
T ss_pred CCEEECCCCccCCc
Confidence 45566666666543
No 40
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=30.98 E-value=7.8 Score=31.82 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCceee-cCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGY-ISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~-ip~~l~~L~~L~~L 453 (453)
.+..|+|+++.+++. .+..+++|++|+.|
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 466788888888773 45667777777654
No 41
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=30.88 E-value=15 Score=31.87 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++..+..|..|++|+.|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEE
Confidence 46678888888885444457777777653
No 42
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=30.81 E-value=23 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=28.3
Q ss_pred eeEEeCCCCCC-------CcceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 411 EGITCHPNKDE-------TAVVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 411 ~Gi~C~~~~~~-------~~~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.-|.|+..+-. -+..++.|+|++|.|+.--+..|..|++|+.|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L 60 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTA 60 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEE
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEE
Confidence 35888654321 12357889999999985334457778887754
No 43
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=30.73 E-value=16 Score=34.69 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.2
Q ss_pred eEEEEEeCC-CCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGS-QGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~-~~LsG~ip~~l~~L~~L~~L 453 (453)
.++.|+|++ |.|++..+..|++|++|+.|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L 61 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNL 61 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEE
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEE
Confidence 577899996 99998888889999999875
No 44
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=30.34 E-value=16 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.|++..+..|.+|++|+.|
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 46779999999987666668888888764
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=30.11 E-value=16 Score=31.80 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|.|++..+..|..|++|+.|
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 357789999999998888889999988865
No 46
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.34 E-value=15 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=24.7
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|+++.+++.++..+++|++|+.|
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 57789999999999888888888888764
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=28.73 E-value=17 Score=30.96 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|.|++..+..|..|++|+.|
T Consensus 81 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred chhhEEECCCCccceeCHHHhccccCCCEE
Confidence 357789999999996555558899998864
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=28.57 E-value=16 Score=38.40 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=11.6
Q ss_pred EEEEeCCCCceeecCccccCCCCCc
Q 012913 427 SQIDLGSQGLKGYISDKISLLSNLV 451 (453)
Q Consensus 427 ~~L~Ls~~~LsG~ip~~l~~L~~L~ 451 (453)
..|+|+++.+.|.+|..|++|++|+
T Consensus 252 ~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp CEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CEEEecCCcCCccChHHHhcCCCCC
Confidence 3444444444444444444444444
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.89 E-value=21 Score=36.14 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=24.2
Q ss_pred ceEEEEEeCCCCceeecCcccc-CCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~-~L~~L~~L 453 (453)
..+..|+|++|.++|.+|..+. .|++|+.|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 3578899999999998888776 68888764
No 50
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=27.43 E-value=18 Score=32.13 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=11.7
Q ss_pred eEEEEEeCCCCceeecC
Q 012913 425 VISQIDLGSQGLKGYIS 441 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip 441 (453)
.+..|+|++|.+++..+
T Consensus 154 ~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 154 SLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TCCEEECCSCCEECSGG
T ss_pred CCCEEEecCcCCcCCCc
Confidence 45668888888776544
No 51
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=27.26 E-value=6.1 Score=41.33 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCceeE-EeCCCCCCCcceEEEEEeCCCCceeecCccc
Q 012913 399 GDPCAPTNWDAWEGI-TCHPNKDETAVVISQIDLGSQGLKGYISDKI 444 (453)
Q Consensus 399 gdpC~p~~~~~W~Gi-~C~~~~~~~~~~v~~L~Ls~~~LsG~ip~~l 444 (453)
++||.... ..|.|+ .|.. .+++.|+|++++|++ ||..+
T Consensus 40 ~~~~~~~~-~~~~~l~~C~~------~~L~~L~Ls~n~L~~-lp~~l 78 (571)
T 3cvr_A 40 ALPGENRN-EAVSLLKECLI------NQFSELQLNRLNLSS-LPDNL 78 (571)
T ss_dssp CCTTCCHH-HHHHHHHHHHH------TTCSEEECCSSCCSC-CCSCC
T ss_pred CCcccccc-chhhhcccccc------CCccEEEeCCCCCCc-cCHhH
Confidence 35773211 148888 6742 246678888888876 77654
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=27.06 E-value=12 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCceee-cCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGY-ISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~-ip~~l~~L~~L~~L 453 (453)
.+..|+|+++.+++. .+..+..|+.|+.|
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 466788888888763 23667778777754
No 53
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=26.98 E-value=19 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.+++..+..+..+++|+.|
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence 56789999999985444446778887754
No 54
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=25.32 E-value=21 Score=31.56 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|.|++..+..|..|++|+.|
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 356789999999998777778888888754
No 55
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=24.97 E-value=3e+02 Score=22.94 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=49.2
Q ss_pred CCCCceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCE---EEEecCCCCCcccCCCceEEEE-EEEecCCeeE
Q 012913 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGT---LVFSWRSPWPEGLARDGAYSDL-FAFVKDGELD 161 (453)
Q Consensus 86 ~g~~~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~---~~l~~~~~~~~~~~~~~~~~E~-i~~~~~~~l~ 161 (453)
.|.-..|++.+.+.|.|-|.+....+. .+ ..+.|.+++. ..+....+..+ +-+....... .+....|.=.
T Consensus 65 ~Gdwl~y~V~v~~aG~Y~i~~rvas~~-~g----~~i~l~vdg~~~~~~~g~~~vp~t-GW~~w~t~t~~~v~L~aG~ht 138 (160)
T 2cdp_A 65 QGDYADYTIAVAQAGNYTISYQAGSGV-TG----GSIEFLVNENGSWASKTVTAVPNQ-GWDNFQPLNGGSVYLSAGTHQ 138 (160)
T ss_dssp TTCEEEEEEEESSCEEEEEEEEEEBSS-SS----CEEEEEEECSSSEEEEEEEECCBS-CTTCCEEEEEEEEEECSEEEE
T ss_pred CCCEEEEEEEcCCCcEEEEEEEEEcCC-CC----ceEEEEECCCCCceeeeEEEcCCC-CCceeEEeeeeEEEeCCCeEE
Confidence 466679999987899999998887553 22 4788888873 22221111111 1111112222 2344566545
Q ss_pred EEEeecCC--CCceeeeeEeEe
Q 012913 162 LCFYSFAT--DPPVIASLEVQQ 181 (453)
Q Consensus 162 vcf~~~~~--~~pfIs~iEl~~ 181 (453)
|.|.-.+. ..--|+-|++.|
T Consensus 139 L~l~~~g~~~~~~Nld~~~f~p 160 (160)
T 2cdp_A 139 VRLHGAGSNNWQWNLDKFTLSN 160 (160)
T ss_dssp EEEEECSSSSBCCEEEEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEEEEC
Confidence 55544332 234667777653
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=24.15 E-value=25 Score=36.04 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=15.8
Q ss_pred EEEEEeCCCCceeecCccccCCCCCcC
Q 012913 426 ISQIDLGSQGLKGYISDKISLLSNLVN 452 (453)
Q Consensus 426 v~~L~Ls~~~LsG~ip~~l~~L~~L~~ 452 (453)
++.|+|++++|++.+|..|.+|++|+.
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCE
Confidence 445666666666655555655555554
No 57
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=23.84 E-value=24 Score=31.69 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=23.5
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..++.|+|+++.+++..+..|.+|++|+.|
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 356788899998888777778888888764
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=23.59 E-value=16 Score=34.19 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=17.0
Q ss_pred eEEEEEeCCCCceeecCccccCC-----CCCcC
Q 012913 425 VISQIDLGSQGLKGYISDKISLL-----SNLVN 452 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L-----~~L~~ 452 (453)
.++.|+|+++.+++. |..++.| ++|+.
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~ 153 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKV 153 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCE
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcE
Confidence 456677777777766 6555555 55554
No 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=23.56 E-value=24 Score=31.72 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|+++.+++..+..|..|++|+.|
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 357789999999997777778889888865
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.48 E-value=16 Score=31.70 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|+++.+-+.+| .+..|+.|+.|
T Consensus 136 ~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp SSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 357789999998666776 68888888764
No 61
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=23.24 E-value=1.8e+02 Score=30.19 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=52.1
Q ss_pred ceEEeecCCCccEEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcc------c--CCCceEEEE-EEEecCCee
Q 012913 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEG------L--ARDGAYSDL-FAFVKDGEL 160 (453)
Q Consensus 90 ~cY~lpv~~~g~ylvRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~------~--~~~~~~~E~-i~~~~~~~l 160 (453)
--|.|-....++|.||..+...+ |. .-.|.+..|++.+........|. . ....++++. -+..+.|.+
T Consensus 488 l~~~i~n~~~~~Y~VR~RYAS~~-d~---~~~~~~~~~~~~i~n~~~fp~T~~~~~~v~G~nG~y~~~~~~~~~~p~g~~ 563 (587)
T 4d8m_A 488 VGIQITNQTKQKYEIRCRYASKG-DN---NVYFNVDLSENPFRNSISFGSTESSVVGVQGENGKYILKSITTVEIPAGSF 563 (587)
T ss_dssp EEEEEEECSCEEEEEEEEEEESS-CE---EEEEEECCSSSCEEEEEEECCCTTCSSSEECSSSEEEEEEEEEEEECSEEE
T ss_pred EEEEEEccccceEEEEEEEecCC-Cc---eEEEEEcCCCceeeccCCCCccccccccccccCCceEeecCCceEecCCcE
Confidence 34566555688999999998532 22 22466666775542211111121 1 122333442 223467888
Q ss_pred EEEEeecCCCCceeeeeEeEe
Q 012913 161 DLCFYSFATDPPVIASLEVQQ 181 (453)
Q Consensus 161 ~vcf~~~~~~~pfIs~iEl~~ 181 (453)
.|.+.+.+.+-=||--||++|
T Consensus 564 t~~i~nn~~~~~~iDRIEFiP 584 (587)
T 4d8m_A 564 YVHITNQGSSDLFLDRIEFVP 584 (587)
T ss_dssp EEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEEEeee
Confidence 898888666677999999998
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=22.71 E-value=23 Score=38.93 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|+++++.|.+|..|++|++|+.|
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 46778999999999999889988888865
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=22.56 E-value=34 Score=31.82 Aligned_cols=30 Identities=20% Similarity=0.059 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCceeecC----ccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYIS----DKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip----~~l~~L~~L~~L 453 (453)
..+..|+|+++.+++.++ ..+..+++|+.|
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L 150 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVL 150 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEE
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEE
Confidence 356778999999888665 334567777654
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.08 E-value=29 Score=35.04 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|++|.++|.+| ++.|++|+.|
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 85 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LESLSTLRTL 85 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCcc--cccCCCCCEE
Confidence 47789999999998776 8888888764
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=21.90 E-value=26 Score=36.28 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|.|+ .||..|++|++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVL 491 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEE
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=21.40 E-value=31 Score=32.36 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=16.7
Q ss_pred EEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 426 ISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 426 v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
+..|+|+++.+++..|..|++|++|+.|
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 4556666666666556666666666543
No 67
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=20.97 E-value=27 Score=29.35 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.2
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|+++.+++..+..+.+|++|+.|
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 357789999999997777678888888764
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=20.96 E-value=32 Score=31.40 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 425 VISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 425 ~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
.+..|+|+++.+++..+..+..+++|+.|
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 46678888888887555567778777654
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=20.34 E-value=31 Score=32.32 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=15.0
Q ss_pred EEEEEeCCCCceeecCccccCCCCCcC
Q 012913 426 ISQIDLGSQGLKGYISDKISLLSNLVN 452 (453)
Q Consensus 426 v~~L~Ls~~~LsG~ip~~l~~L~~L~~ 452 (453)
++.|+|+++.+++..|..|++|++|+.
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 78 LHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 445556655555555555555555554
No 70
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=20.14 E-value=31 Score=30.61 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCCceeecCccccCCCCCcCC
Q 012913 424 VVISQIDLGSQGLKGYISDKISLLSNLVNL 453 (453)
Q Consensus 424 ~~v~~L~Ls~~~LsG~ip~~l~~L~~L~~L 453 (453)
..+..|+|++|+|+ .||..+..|++|+.|
T Consensus 112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred hhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 35678999999998 888888888888764
Done!