Query 012914
Match_columns 453
No_of_seqs 204 out of 957
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 5.2E-95 1.8E-99 789.1 45.2 440 1-453 306-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 1.8E-94 6.2E-99 784.7 41.5 434 1-453 322-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.7E-86 9.2E-91 666.3 32.5 357 96-453 3-382 (382)
4 3o2p_E Cell division control p 99.9 1.8E-28 6.2E-33 190.9 4.7 82 371-453 7-88 (88)
5 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 1.2E-28 4.1E-33 187.4 2.2 75 379-453 3-77 (77)
6 1iuy_A Cullin-3 homologue; win 99.9 2.4E-28 8.2E-33 192.3 0.1 82 372-453 11-92 (92)
7 2do7_A Cullin-4B, CUL-4B; heli 99.9 1.5E-27 5E-32 190.4 3.3 81 371-453 15-95 (101)
8 4ap2_B Cullin-3, CUL-3; ubiqui 99.7 8.1E-17 2.8E-21 163.2 8.2 99 1-112 299-397 (410)
9 2wzk_A Cullin-5, CUL-5; UBL co 99.4 3.1E-13 1.1E-17 136.2 9.0 86 1-94 296-381 (391)
10 4a64_A Cullin-4B, CUL4B, CUL-4 99.4 2.4E-13 8E-18 135.3 5.5 81 1-94 273-353 (354)
11 4eoz_B Cullin-3, CUL-3; E3 ubi 99.3 1.4E-13 4.9E-18 137.4 0.1 83 1-93 282-364 (364)
12 1wi9_A Protein C20ORF116 homol 91.5 0.11 3.6E-06 38.0 2.6 54 392-453 12-65 (72)
13 2jt1_A PEFI protein; solution 89.4 0.35 1.2E-05 36.1 3.9 41 302-344 23-63 (77)
14 3cuo_A Uncharacterized HTH-typ 88.6 0.67 2.3E-05 35.6 5.4 49 288-338 23-71 (99)
15 3lmm_A Uncharacterized protein 87.7 0.25 8.5E-06 51.7 2.9 136 288-447 429-568 (583)
16 3tgn_A ADC operon repressor AD 87.6 0.85 2.9E-05 37.6 5.8 52 285-339 34-85 (146)
17 3jth_A Transcription activator 87.0 1.6 5.3E-05 33.6 6.6 49 288-339 22-70 (98)
18 3g3z_A NMB1585, transcriptiona 86.9 0.77 2.6E-05 37.9 5.1 51 287-339 29-79 (145)
19 3hsr_A HTH-type transcriptiona 86.8 0.65 2.2E-05 38.3 4.5 52 286-339 33-84 (140)
20 1sfx_A Conserved hypothetical 86.6 0.66 2.2E-05 36.0 4.3 49 287-337 18-66 (109)
21 2htj_A P fimbrial regulatory p 86.1 1.8 6.3E-05 32.0 6.3 59 293-355 4-62 (81)
22 1qgp_A Protein (double strande 86.1 0.98 3.4E-05 33.5 4.7 57 291-354 16-75 (77)
23 1y0u_A Arsenical resistance op 86.0 1.6 5.5E-05 33.5 6.2 56 288-355 30-85 (96)
24 3ech_A MEXR, multidrug resista 86.0 0.63 2.2E-05 38.4 4.0 51 286-338 34-84 (142)
25 3cdh_A Transcriptional regulat 85.4 1.4 4.7E-05 36.8 6.0 50 287-338 41-90 (155)
26 3nrv_A Putative transcriptiona 85.2 1 3.4E-05 37.3 5.0 51 286-338 37-87 (148)
27 3r0a_A Putative transcriptiona 84.9 0.87 3E-05 37.0 4.3 51 286-338 23-75 (123)
28 4hbl_A Transcriptional regulat 84.5 0.85 2.9E-05 38.0 4.2 51 287-339 39-89 (149)
29 2gxg_A 146AA long hypothetical 84.4 1.5 5.3E-05 35.9 5.8 49 287-338 35-83 (146)
30 3oop_A LIN2960 protein; protei 84.1 0.71 2.4E-05 38.1 3.5 51 287-339 35-85 (143)
31 2fbh_A Transcriptional regulat 84.0 1.2 4.1E-05 36.6 4.9 50 287-338 35-85 (146)
32 3k0l_A Repressor protein; heli 83.9 1 3.5E-05 38.1 4.5 50 287-338 44-93 (162)
33 2frh_A SARA, staphylococcal ac 83.9 0.86 2.9E-05 37.1 3.8 52 286-339 34-87 (127)
34 2fu4_A Ferric uptake regulatio 83.8 1.3 4.6E-05 32.9 4.6 51 286-338 14-71 (83)
35 1xn7_A Hypothetical protein YH 83.7 1.1 3.8E-05 33.4 3.9 43 294-338 7-49 (78)
36 2qww_A Transcriptional regulat 83.6 1.2 4.2E-05 37.1 4.8 49 287-337 39-87 (154)
37 3bpv_A Transcriptional regulat 83.5 0.96 3.3E-05 36.8 4.0 50 287-338 27-76 (138)
38 3eco_A MEPR; mutlidrug efflux 83.4 1.1 3.7E-05 36.7 4.3 50 287-338 29-80 (139)
39 2d1h_A ST1889, 109AA long hypo 83.1 1.1 3.8E-05 34.7 4.1 50 287-338 19-69 (109)
40 3bro_A Transcriptional regulat 82.8 1.5 5.1E-05 35.8 5.0 50 287-338 32-83 (141)
41 3bj6_A Transcriptional regulat 82.8 1.4 4.8E-05 36.5 4.8 50 287-338 38-87 (152)
42 2fa5_A Transcriptional regulat 82.6 1.5 5E-05 36.9 5.0 51 286-338 46-96 (162)
43 1qbj_A Protein (double-strande 82.3 2.3 7.7E-05 31.9 5.3 57 291-354 12-71 (81)
44 1jgs_A Multiple antibiotic res 82.3 1.2 4.1E-05 36.3 4.2 50 287-338 32-81 (138)
45 3pqk_A Biofilm growth-associat 82.2 3.9 0.00013 31.5 7.0 61 288-355 22-82 (102)
46 3e6m_A MARR family transcripti 81.6 1.1 3.7E-05 37.9 3.7 51 287-339 51-101 (161)
47 3bja_A Transcriptional regulat 81.6 0.95 3.2E-05 36.9 3.2 50 287-338 31-80 (139)
48 1u2w_A CADC repressor, cadmium 81.5 2.6 8.8E-05 34.0 5.8 49 288-338 41-89 (122)
49 1xn7_A Hypothetical protein YH 81.4 0.88 3E-05 34.0 2.7 43 392-442 7-49 (78)
50 2k02_A Ferrous iron transport 81.4 1.2 4.2E-05 33.9 3.5 43 294-338 7-49 (87)
51 3bdd_A Regulatory protein MARR 81.3 1.4 4.9E-05 35.9 4.3 51 286-338 28-78 (142)
52 1oyi_A Double-stranded RNA-bin 81.3 2.4 8.1E-05 31.9 5.0 43 293-338 21-63 (82)
53 3deu_A Transcriptional regulat 80.8 1.5 5.2E-05 37.3 4.4 50 287-338 51-101 (166)
54 2nnn_A Probable transcriptiona 80.7 1.2 4E-05 36.4 3.5 51 286-338 35-85 (140)
55 2pex_A Transcriptional regulat 80.7 1.5 5.2E-05 36.4 4.3 50 287-338 45-94 (153)
56 3lwf_A LIN1550 protein, putati 80.5 4.6 0.00016 34.4 7.3 59 290-355 30-89 (159)
57 2nyx_A Probable transcriptiona 80.4 1.3 4.3E-05 37.8 3.8 51 286-338 42-92 (168)
58 1ku9_A Hypothetical protein MJ 80.4 2.4 8.3E-05 34.8 5.5 50 287-338 24-74 (152)
59 3cjn_A Transcriptional regulat 80.3 1.5 5.2E-05 36.9 4.2 50 287-338 50-99 (162)
60 2bv6_A MGRA, HTH-type transcri 80.2 1.1 3.8E-05 36.8 3.2 50 287-338 35-84 (142)
61 2a61_A Transcriptional regulat 79.9 1.2 4.2E-05 36.5 3.4 50 287-338 31-80 (145)
62 1tbx_A ORF F-93, hypothetical 79.9 1.8 6.1E-05 33.3 4.1 51 286-338 5-59 (99)
63 2hr3_A Probable transcriptiona 79.8 1.7 5.7E-05 35.8 4.2 51 286-338 32-83 (147)
64 2rdp_A Putative transcriptiona 79.7 1.6 5.5E-05 36.1 4.1 50 287-338 40-89 (150)
65 2eth_A Transcriptional regulat 79.2 1.8 6E-05 36.2 4.2 50 287-338 42-91 (154)
66 1s3j_A YUSO protein; structura 79.0 1.3 4.6E-05 36.8 3.4 51 286-338 34-84 (155)
67 1lj9_A Transcriptional regulat 79.0 1.4 4.6E-05 36.2 3.4 50 287-338 27-76 (144)
68 1z91_A Organic hydroperoxide r 78.6 1.5 5.2E-05 36.1 3.6 50 287-338 38-87 (147)
69 3s2w_A Transcriptional regulat 78.5 1.1 3.7E-05 37.8 2.7 50 287-338 48-97 (159)
70 2dk5_A DNA-directed RNA polyme 78.5 1.2 4E-05 34.3 2.6 52 283-336 14-67 (91)
71 3k69_A Putative transcription 78.5 3 0.0001 35.7 5.5 46 290-337 15-60 (162)
72 3t8r_A Staphylococcus aureus C 78.4 5.2 0.00018 33.3 6.9 57 291-354 15-72 (143)
73 3fm5_A Transcriptional regulat 78.3 2.1 7.3E-05 35.4 4.5 50 287-338 37-87 (150)
74 2fbi_A Probable transcriptiona 78.1 1.3 4.3E-05 36.2 2.9 50 287-338 34-83 (142)
75 1p6r_A Penicillinase repressor 78.0 2.1 7.2E-05 31.7 3.9 51 286-338 6-60 (82)
76 2k4b_A Transcriptional regulat 78.0 1.5 5E-05 34.3 3.1 60 389-453 37-96 (99)
77 3jw4_A Transcriptional regulat 77.9 1 3.5E-05 37.4 2.3 50 287-338 39-90 (148)
78 2k02_A Ferrous iron transport 77.8 1 3.5E-05 34.4 2.0 44 392-443 7-50 (87)
79 1xmk_A Double-stranded RNA-spe 77.7 3.1 0.00011 31.0 4.6 48 289-338 11-59 (79)
80 3f3x_A Transcriptional regulat 77.6 1.6 5.4E-05 35.9 3.4 50 286-338 34-83 (144)
81 3kp7_A Transcriptional regulat 77.5 1.7 5.6E-05 36.2 3.5 49 286-337 35-83 (151)
82 1p6r_A Penicillinase repressor 77.4 1 3.4E-05 33.5 1.9 58 390-452 12-69 (82)
83 2heo_A Z-DNA binding protein 1 77.3 1.3 4.6E-05 31.7 2.5 41 290-330 11-52 (67)
84 4b8x_A SCO5413, possible MARR- 77.2 1.9 6.4E-05 36.0 3.8 51 287-339 33-85 (147)
85 4aik_A Transcriptional regulat 76.7 4 0.00014 34.1 5.7 51 287-339 29-80 (151)
86 3nqo_A MARR-family transcripti 76.6 2.2 7.4E-05 37.3 4.2 50 287-338 39-90 (189)
87 2v79_A DNA replication protein 76.3 2.1 7.3E-05 35.4 3.8 27 415-441 57-83 (135)
88 3boq_A Transcriptional regulat 76.2 1.7 6E-05 36.3 3.3 50 287-338 45-95 (160)
89 2e1c_A Putative HTH-type trans 75.8 2.7 9.1E-05 36.3 4.4 65 267-336 8-72 (171)
90 1r1u_A CZRA, repressor protein 75.8 3 0.0001 32.6 4.4 48 288-338 25-72 (106)
91 2oqg_A Possible transcriptiona 75.8 2.3 7.9E-05 33.4 3.8 48 288-338 20-67 (114)
92 2v79_A DNA replication protein 75.6 2.7 9.1E-05 34.9 4.2 52 284-337 27-83 (135)
93 1sfu_A 34L protein; protein/Z- 75.2 6.6 0.00022 28.9 5.6 42 295-338 21-62 (75)
94 1ylf_A RRF2 family protein; st 75.2 5.6 0.00019 33.2 6.2 58 290-355 17-74 (149)
95 2fxa_A Protease production reg 75.0 2 7E-05 38.2 3.6 50 287-338 46-95 (207)
96 2xub_A DNA-directed RNA polyme 74.8 2.4 8.3E-05 43.7 4.5 130 299-444 29-162 (534)
97 2y75_A HTH-type transcriptiona 74.7 8.2 0.00028 31.2 7.0 48 301-355 24-71 (129)
98 1bja_A Transcription regulator 74.6 3.1 0.00011 32.2 4.0 50 285-336 12-62 (95)
99 1bby_A RAP30; average structur 74.3 6 0.0002 28.6 5.1 57 291-357 10-66 (69)
100 1ub9_A Hypothetical protein PH 73.9 2.3 7.9E-05 32.4 3.2 48 288-337 15-62 (100)
101 2vn2_A DNAD, chromosome replic 73.3 4 0.00014 33.3 4.7 53 285-339 28-85 (128)
102 1fse_A GERE; helix-turn-helix 73.0 6.2 0.00021 28.1 5.3 41 286-328 11-51 (74)
103 2wte_A CSA3; antiviral protein 72.9 3 0.0001 38.3 4.2 51 286-338 149-199 (244)
104 2p5k_A Arginine repressor; DNA 72.8 4.7 0.00016 28.0 4.4 37 291-327 7-48 (64)
105 2l02_A Uncharacterized protein 72.1 7.5 0.00026 29.0 5.4 37 293-329 12-48 (82)
106 2pn6_A ST1022, 150AA long hypo 71.9 5.6 0.00019 33.0 5.5 48 288-337 2-49 (150)
107 3r4k_A Transcriptional regulat 71.3 4.3 0.00015 37.5 4.9 56 292-355 9-65 (260)
108 1je8_A Nitrate/nitrite respons 70.5 7 0.00024 28.9 5.1 41 286-328 21-61 (82)
109 2jsc_A Transcriptional regulat 70.1 6.7 0.00023 31.2 5.3 48 288-338 20-67 (118)
110 3ulq_B Transcriptional regulat 70.0 7.3 0.00025 29.5 5.2 43 284-328 27-69 (90)
111 2xrn_A HTH-type transcriptiona 69.9 6.1 0.00021 35.9 5.6 56 292-355 9-65 (241)
112 2obp_A Putative DNA-binding pr 69.8 4.5 0.00015 31.4 3.9 50 286-337 13-68 (96)
113 2kko_A Possible transcriptiona 69.8 2.6 8.9E-05 33.2 2.7 45 291-338 27-71 (108)
114 2w25_A Probable transcriptiona 69.4 5.1 0.00018 33.3 4.6 49 287-337 5-53 (150)
115 3u2r_A Regulatory protein MARR 68.4 2.4 8.3E-05 35.9 2.4 50 287-338 44-95 (168)
116 1tbx_A ORF F-93, hypothetical 67.5 2.5 8.5E-05 32.4 2.1 55 392-450 13-67 (99)
117 1i1g_A Transcriptional regulat 67.0 4.8 0.00017 32.9 3.9 48 288-337 3-50 (141)
118 3mq0_A Transcriptional repress 66.7 4.9 0.00017 37.4 4.3 45 292-338 33-78 (275)
119 2cfx_A HTH-type transcriptiona 66.6 6.5 0.00022 32.5 4.7 48 287-336 3-50 (144)
120 2ia0_A Putative HTH-type trans 66.2 5.9 0.0002 34.0 4.4 52 283-336 11-62 (171)
121 1sd4_A Penicillinase repressor 65.9 4.1 0.00014 32.6 3.2 51 286-338 7-61 (126)
122 2dbb_A Putative HTH-type trans 65.8 6.8 0.00023 32.6 4.7 48 287-336 7-54 (151)
123 2fu4_A Ferric uptake regulatio 65.8 5 0.00017 29.6 3.4 58 391-451 21-80 (83)
124 1x3u_A Transcriptional regulat 65.5 9.6 0.00033 27.5 5.0 40 287-328 17-56 (79)
125 1xd7_A YWNA; structural genomi 65.5 9 0.00031 31.8 5.3 45 290-338 12-56 (145)
126 2lkp_A Transcriptional regulat 65.5 7.5 0.00025 30.8 4.7 46 289-337 32-77 (119)
127 2g9w_A Conserved hypothetical 65.3 8 0.00027 31.7 4.9 50 287-338 7-61 (138)
128 2cg4_A Regulatory protein ASNC 65.3 7 0.00024 32.6 4.7 48 287-336 6-53 (152)
129 3f6o_A Probable transcriptiona 65.2 6.1 0.00021 31.5 4.1 48 288-338 17-64 (118)
130 3c57_A Two component transcrip 64.9 8.2 0.00028 29.4 4.6 41 286-328 27-67 (95)
131 2cyy_A Putative HTH-type trans 64.8 7.2 0.00025 32.5 4.6 49 287-337 5-53 (151)
132 1p4x_A Staphylococcal accessor 63.8 6.9 0.00024 35.9 4.6 52 286-339 155-208 (250)
133 1okr_A MECI, methicillin resis 63.1 4.4 0.00015 32.3 2.8 51 286-338 7-61 (123)
134 1mkm_A ICLR transcriptional re 62.8 11 0.00037 34.4 5.8 45 292-338 11-56 (249)
135 2yu3_A DNA-directed RNA polyme 62.8 8 0.00027 29.9 4.1 50 286-337 34-85 (95)
136 1hsj_A Fusion protein consisti 62.7 5.8 0.0002 39.9 4.3 52 285-338 400-453 (487)
137 2p5v_A Transcriptional regulat 61.2 9 0.00031 32.3 4.6 48 287-336 8-55 (162)
138 4fx0_A Probable transcriptiona 60.9 11 0.00036 31.3 4.9 48 287-336 31-83 (148)
139 2x48_A CAG38821; archeal virus 60.6 24 0.00084 23.3 6.0 24 302-325 30-53 (55)
140 1p4x_A Staphylococcal accessor 60.5 5.8 0.0002 36.4 3.5 52 286-339 31-84 (250)
141 3f8b_A Transcriptional regulat 60.4 9 0.00031 30.5 4.2 59 383-442 8-66 (116)
142 3r0a_A Putative transcriptiona 59.8 4.2 0.00015 32.8 2.2 57 388-452 27-89 (123)
143 1oks_A RNA polymerase alpha su 59.2 13 0.00043 25.0 3.9 44 151-194 5-48 (56)
144 2zkz_A Transcriptional repress 59.2 7.6 0.00026 29.8 3.5 42 288-329 26-67 (99)
145 2o0y_A Transcriptional regulat 59.1 9.8 0.00033 35.0 4.8 44 293-338 27-71 (260)
146 2vn2_A DNAD, chromosome replic 58.8 5.6 0.00019 32.4 2.7 27 417-443 59-85 (128)
147 1q1h_A TFE, transcription fact 58.6 9.5 0.00032 29.7 4.0 39 298-338 28-66 (110)
148 1sd4_A Penicillinase repressor 58.5 7 0.00024 31.1 3.3 58 390-452 13-70 (126)
149 2pg4_A Uncharacterized protein 58.5 7.5 0.00026 29.4 3.3 44 291-336 17-62 (95)
150 2p7v_B Sigma-70, RNA polymeras 58.4 18 0.00063 25.3 5.2 41 287-327 6-49 (68)
151 1r1t_A Transcriptional repress 57.2 17 0.0006 29.0 5.5 46 289-337 46-91 (122)
152 1tc3_C Protein (TC3 transposas 56.1 15 0.0005 23.2 4.1 33 293-327 13-45 (51)
153 2fbk_A Transcriptional regulat 56.0 4.2 0.00014 34.9 1.6 50 287-338 67-119 (181)
154 2jpc_A SSRB; DNA binding prote 55.8 11 0.00039 25.6 3.6 34 293-328 5-38 (61)
155 2l01_A Uncharacterized protein 55.7 16 0.00056 26.8 4.4 38 292-329 13-51 (77)
156 2htj_A P fimbrial regulatory p 55.6 10 0.00034 27.8 3.5 43 392-442 5-47 (81)
157 2ia2_A Putative transcriptiona 55.6 13 0.00043 34.3 4.9 55 292-356 24-79 (265)
158 3i4p_A Transcriptional regulat 55.5 17 0.0006 30.5 5.5 45 290-336 4-48 (162)
159 2rnj_A Response regulator prot 55.0 8.5 0.00029 29.0 3.1 40 287-328 30-69 (91)
160 2jt1_A PEFI protein; solution 54.4 3.7 0.00013 30.4 0.8 28 419-446 34-61 (77)
161 2g7u_A Transcriptional regulat 54.3 15 0.00052 33.5 5.3 55 291-355 16-71 (257)
162 1okr_A MECI, methicillin resis 54.2 4.2 0.00014 32.4 1.2 56 392-452 15-70 (123)
163 1ku3_A Sigma factor SIGA; heli 53.7 20 0.00067 25.5 4.8 40 288-327 12-54 (73)
164 3t72_q RNA polymerase sigma fa 53.6 18 0.00061 28.0 4.8 38 288-325 21-61 (99)
165 2hzt_A Putative HTH-type trans 53.1 14 0.00049 28.6 4.2 46 290-338 15-61 (107)
166 4a0z_A Transcription factor FA 52.8 13 0.00045 32.5 4.3 39 290-328 13-51 (190)
167 1tty_A Sigma-A, RNA polymerase 52.3 21 0.00073 26.4 5.0 40 288-327 20-62 (87)
168 2x4h_A Hypothetical protein SS 51.7 18 0.00062 29.2 4.9 50 286-337 10-63 (139)
169 3f6v_A Possible transcriptiona 51.6 12 0.0004 31.4 3.7 48 288-338 57-104 (151)
170 1qbj_A Protein (double-strande 51.6 7 0.00024 29.2 2.0 52 390-449 13-67 (81)
171 2qvo_A Uncharacterized protein 51.6 8.2 0.00028 29.3 2.5 47 287-335 10-60 (95)
172 2g9w_A Conserved hypothetical 51.5 13 0.00044 30.4 3.9 58 389-451 11-69 (138)
173 1z7u_A Hypothetical protein EF 51.4 11 0.00036 29.7 3.2 47 289-338 22-69 (112)
174 2k4b_A Transcriptional regulat 51.3 2.8 9.4E-05 32.7 -0.3 51 286-338 32-86 (99)
175 1on2_A Transcriptional regulat 50.7 12 0.00041 30.4 3.6 40 297-338 16-55 (142)
176 1p4w_A RCSB; solution structur 49.5 19 0.00066 27.7 4.4 41 286-328 34-74 (99)
177 1nkl_A NK-lysin; saposin fold, 49.4 48 0.0016 24.1 6.4 60 99-162 6-66 (78)
178 2p4w_A Transcriptional regulat 47.9 22 0.00075 31.3 5.0 48 288-338 14-61 (202)
179 3b73_A PHIH1 repressor-like pr 47.2 18 0.00062 28.6 3.9 50 287-338 11-62 (111)
180 2lnb_A Z-DNA-binding protein 1 46.9 12 0.00041 27.5 2.5 36 293-328 23-59 (80)
181 1yyv_A Putative transcriptiona 46.8 21 0.0007 29.0 4.4 48 288-338 34-82 (131)
182 3cuo_A Uncharacterized HTH-typ 46.7 11 0.00039 28.3 2.6 53 389-449 26-78 (99)
183 1uly_A Hypothetical protein PH 46.2 29 0.00099 30.2 5.5 49 287-338 18-66 (192)
184 3hug_A RNA polymerase sigma fa 45.5 31 0.0011 25.7 4.9 38 288-327 39-77 (92)
185 2frh_A SARA, staphylococcal ac 45.4 11 0.00037 30.3 2.4 28 419-446 63-92 (127)
186 2o8x_A Probable RNA polymerase 45.3 33 0.0011 23.6 4.9 39 287-327 16-55 (70)
187 3df8_A Possible HXLR family tr 45.0 24 0.00082 27.6 4.4 48 288-338 26-76 (111)
188 1qgp_A Protein (double strande 44.6 11 0.00039 27.6 2.2 51 391-449 18-71 (77)
189 3to7_A Histone acetyltransfera 44.6 18 0.00062 33.3 3.9 38 290-327 194-232 (276)
190 4a5n_A Uncharacterized HTH-typ 43.2 33 0.0011 27.9 5.0 46 290-338 27-73 (131)
191 2f2e_A PA1607; transcription f 43.1 34 0.0011 28.2 5.2 47 290-339 25-71 (146)
192 2fsw_A PG_0823 protein; alpha- 42.0 26 0.00089 27.0 4.1 45 291-338 27-72 (107)
193 1xma_A Predicted transcription 41.2 17 0.00059 30.2 3.1 57 386-443 40-96 (145)
194 2dk5_A DNA-directed RNA polyme 41.1 19 0.00064 27.4 3.0 24 418-441 45-68 (91)
195 1bia_A BIRA bifunctional prote 41.0 62 0.0021 30.5 7.4 40 290-329 6-45 (321)
196 2qlz_A Transcription factor PF 41.0 23 0.00078 32.0 4.1 44 291-337 167-210 (232)
197 3i4p_A Transcriptional regulat 40.3 15 0.00051 31.0 2.6 47 388-442 4-50 (162)
198 1sfx_A Conserved hypothetical 40.3 10 0.00036 28.8 1.5 47 389-443 22-68 (109)
199 1l9l_A Granulysin; saposin fol 39.5 46 0.0016 24.1 4.8 58 99-161 6-65 (74)
200 2ou2_A Histone acetyltransfera 39.0 28 0.00095 32.3 4.3 25 303-327 212-236 (280)
201 2ozu_A Histone acetyltransfera 38.6 23 0.00078 32.8 3.6 28 300-327 211-238 (284)
202 3kp7_A Transcriptional regulat 36.9 9.4 0.00032 31.4 0.7 51 389-448 40-94 (151)
203 3cdh_A Transcriptional regulat 35.2 23 0.00077 29.0 2.9 47 389-443 45-91 (155)
204 2pg4_A Uncharacterized protein 35.0 8.4 0.00029 29.1 0.1 45 396-448 24-70 (95)
205 1mzb_A Ferric uptake regulatio 34.9 48 0.0016 26.8 4.8 64 285-353 14-84 (136)
206 3mzy_A RNA polymerase sigma-H 34.5 39 0.0013 27.5 4.3 39 287-327 110-148 (164)
207 1v4r_A Transcriptional repress 34.4 23 0.0008 27.0 2.7 40 297-338 28-68 (102)
208 3bja_A Transcriptional regulat 34.3 23 0.0008 28.1 2.8 48 392-447 38-87 (139)
209 2fbh_A Transcriptional regulat 34.0 31 0.001 27.7 3.5 47 389-443 39-86 (146)
210 2pq8_A Probable histone acetyl 34.0 24 0.00081 32.7 3.0 38 290-327 194-232 (278)
211 3k0l_A Repressor protein; heli 33.9 25 0.00087 29.1 3.0 48 388-443 47-94 (162)
212 1j5y_A Transcriptional regulat 33.9 39 0.0013 29.1 4.3 39 291-329 23-62 (187)
213 2qww_A Transcriptional regulat 33.8 20 0.00069 29.2 2.3 45 389-441 43-87 (154)
214 2hzt_A Putative HTH-type trans 33.7 45 0.0015 25.6 4.3 51 392-451 19-72 (107)
215 3dp7_A SAM-dependent methyltra 33.5 50 0.0017 31.6 5.5 35 301-337 48-82 (363)
216 3tgn_A ADC operon repressor AD 33.5 19 0.00066 29.0 2.1 43 392-443 43-85 (146)
217 1jko_C HIN recombinase, DNA-in 33.3 48 0.0016 20.9 3.8 24 303-326 21-44 (52)
218 1r7j_A Conserved hypothetical 33.1 62 0.0021 24.5 4.9 43 292-338 11-53 (95)
219 3f2g_A Alkylmercury lyase; MER 33.0 56 0.0019 29.2 5.2 39 290-328 23-61 (220)
220 3cuq_B Vacuolar protein-sortin 32.9 1.1E+02 0.0038 27.1 7.2 84 237-338 113-201 (218)
221 2fe3_A Peroxide operon regulat 32.9 49 0.0017 27.2 4.6 65 285-354 18-88 (145)
222 2qvo_A Uncharacterized protein 32.3 18 0.00063 27.2 1.7 29 418-447 39-67 (95)
223 3jth_A Transcription activator 31.9 31 0.0011 25.9 3.0 52 390-450 26-77 (98)
224 3k2z_A LEXA repressor; winged 31.8 55 0.0019 28.3 5.0 50 287-338 3-57 (196)
225 3bro_A Transcriptional regulat 31.8 26 0.00089 27.9 2.7 46 390-443 37-84 (141)
226 1i1g_A Transcriptional regulat 31.3 20 0.0007 29.0 1.9 47 389-443 6-52 (141)
227 3bpv_A Transcriptional regulat 31.1 21 0.00073 28.4 2.0 47 389-443 31-77 (138)
228 3clo_A Transcriptional regulat 30.8 43 0.0015 30.3 4.3 41 286-328 197-237 (258)
229 3hrs_A Metalloregulator SCAR; 30.6 55 0.0019 28.8 4.9 43 294-338 11-53 (214)
230 1ku9_A Hypothetical protein MJ 30.5 24 0.00081 28.4 2.2 42 399-448 39-82 (152)
231 1xsv_A Hypothetical UPF0122 pr 30.5 70 0.0024 25.0 5.0 40 287-327 26-65 (113)
232 2ip2_A Probable phenazine-spec 30.2 73 0.0025 29.7 6.0 35 302-338 40-74 (334)
233 3eco_A MEPR; mutlidrug efflux 30.1 27 0.00091 27.9 2.5 46 390-443 34-81 (139)
234 2eth_A Transcriptional regulat 30.0 35 0.0012 27.8 3.3 46 389-442 46-91 (154)
235 2nyx_A Probable transcriptiona 29.5 28 0.00096 29.1 2.6 49 391-447 49-99 (168)
236 2xub_A DNA-directed RNA polyme 29.5 67 0.0023 32.7 5.9 117 303-442 287-407 (534)
237 3i53_A O-methyltransferase; CO 29.4 82 0.0028 29.4 6.2 35 302-338 37-71 (332)
238 2r3s_A Uncharacterized protein 29.3 65 0.0022 30.0 5.4 34 302-337 38-71 (335)
239 1z91_A Organic hydroperoxide r 29.2 46 0.0016 26.7 3.8 26 418-443 63-88 (147)
240 1x19_A CRTF-related protein; m 29.2 85 0.0029 29.7 6.3 43 302-354 63-105 (359)
241 2dbb_A Putative HTH-type trans 28.7 29 0.00099 28.5 2.5 45 389-441 11-55 (151)
242 3oop_A LIN2960 protein; protei 28.6 27 0.00093 28.1 2.2 40 396-443 46-85 (143)
243 1tw3_A COMT, carminomycin 4-O- 28.4 59 0.002 30.8 5.0 34 302-337 51-84 (360)
244 2fa5_A Transcriptional regulat 28.3 22 0.00074 29.3 1.6 47 389-443 51-97 (162)
245 2xig_A Ferric uptake regulatio 28.3 69 0.0024 26.4 4.8 52 285-338 23-80 (150)
246 2gxg_A 146AA long hypothetical 28.0 42 0.0014 26.8 3.4 45 390-443 40-84 (146)
247 1z6r_A MLC protein; transcript 27.9 97 0.0033 30.0 6.6 64 292-357 19-85 (406)
248 3eyy_A Putative iron uptake re 27.8 25 0.00084 29.1 1.8 56 393-451 25-80 (145)
249 3g3z_A NMB1585, transcriptiona 27.7 22 0.00075 28.7 1.5 47 389-443 33-79 (145)
250 3szt_A QCSR, quorum-sensing co 27.6 61 0.0021 28.9 4.7 41 286-328 175-215 (237)
251 1t6s_A Conserved hypothetical 27.6 59 0.002 27.5 4.2 33 296-328 15-49 (162)
252 1jgs_A Multiple antibiotic res 27.6 33 0.0011 27.2 2.6 43 392-442 39-81 (138)
253 2pn6_A ST1022, 150AA long hypo 27.6 32 0.0011 28.2 2.5 45 389-441 5-49 (150)
254 2h09_A Transcriptional regulat 27.4 57 0.002 26.7 4.1 39 298-338 49-87 (155)
255 2o03_A Probable zinc uptake re 27.3 82 0.0028 25.2 5.0 50 287-338 9-64 (131)
256 3mwm_A ZUR, putative metal upt 27.2 54 0.0019 26.7 3.9 58 391-451 18-76 (139)
257 1l3l_A Transcriptional activat 27.2 78 0.0027 28.0 5.3 41 286-328 173-213 (234)
258 2w57_A Ferric uptake regulatio 27.2 60 0.002 26.8 4.2 52 285-338 13-71 (150)
259 1s7o_A Hypothetical UPF0122 pr 27.1 67 0.0023 25.2 4.2 39 287-327 23-62 (113)
260 1lj9_A Transcriptional regulat 27.1 35 0.0012 27.3 2.7 44 392-443 34-77 (144)
261 2bv6_A MGRA, HTH-type transcri 26.9 31 0.0011 27.6 2.3 46 390-443 40-85 (142)
262 3cjn_A Transcriptional regulat 26.9 32 0.0011 28.3 2.4 47 389-443 54-100 (162)
263 2b0l_A GTP-sensing transcripti 26.8 26 0.00089 27.1 1.7 54 389-450 30-85 (102)
264 2nnn_A Probable transcriptiona 26.8 25 0.00086 27.9 1.7 26 418-443 61-86 (140)
265 1mzb_A Ferric uptake regulatio 26.7 54 0.0018 26.5 3.8 51 391-444 22-74 (136)
266 2cfx_A HTH-type transcriptiona 26.6 27 0.00092 28.6 1.9 45 390-442 8-52 (144)
267 1qzz_A RDMB, aclacinomycin-10- 26.5 72 0.0025 30.3 5.3 34 302-337 48-81 (374)
268 3mcz_A O-methyltransferase; ad 26.2 77 0.0026 29.8 5.3 34 303-338 56-89 (352)
269 2l0k_A Stage III sporulation p 26.1 51 0.0017 25.1 3.2 33 293-326 11-43 (93)
270 3mn2_A Probable ARAC family tr 25.5 1.1E+02 0.0039 23.1 5.3 28 301-328 16-43 (108)
271 1yg2_A Gene activator APHA; vi 25.5 35 0.0012 29.1 2.5 55 388-443 3-57 (179)
272 2p5v_A Transcriptional regulat 25.5 28 0.00096 29.1 1.8 44 391-442 14-57 (162)
273 3iuo_A ATP-dependent DNA helic 25.1 1E+02 0.0035 24.5 5.1 37 290-328 21-57 (122)
274 1ufm_A COP9 complex subunit 4; 25.1 98 0.0034 22.9 4.6 39 291-329 18-56 (84)
275 2lfw_A PHYR sigma-like domain; 25.0 56 0.0019 26.9 3.6 38 288-326 95-132 (157)
276 3rkx_A Biotin-[acetyl-COA-carb 24.9 1.2E+02 0.0042 28.5 6.4 37 293-329 7-45 (323)
277 3tqn_A Transcriptional regulat 24.8 72 0.0025 24.8 4.0 39 298-338 27-66 (113)
278 2xzm_8 RPS25E,; ribosome, tran 24.7 8.7 0.0003 31.7 -1.5 35 418-452 72-106 (143)
279 4esf_A PADR-like transcription 24.6 69 0.0023 25.3 3.9 57 383-442 7-63 (117)
280 2e1c_A Putative HTH-type trans 24.5 32 0.0011 29.3 2.0 46 389-442 29-74 (171)
281 2qlz_A Transcription factor PF 24.5 38 0.0013 30.5 2.6 47 288-337 11-57 (232)
282 3bj6_A Transcriptional regulat 24.4 37 0.0013 27.4 2.4 46 390-443 43-88 (152)
283 2rdp_A Putative transcriptiona 24.2 37 0.0013 27.4 2.3 37 399-443 54-90 (150)
284 2cg4_A Regulatory protein ASNC 24.1 30 0.001 28.5 1.7 45 389-441 10-54 (152)
285 1q1h_A TFE, transcription fact 24.1 54 0.0018 25.1 3.1 44 391-442 22-66 (110)
286 3hsr_A HTH-type transcriptiona 24.0 26 0.0009 28.1 1.3 47 389-443 38-84 (140)
287 1uxc_A FRUR (1-57), fructose r 23.9 64 0.0022 22.6 3.2 22 304-325 1-22 (65)
288 4esb_A Transcriptional regulat 23.9 37 0.0013 26.8 2.1 55 385-442 7-61 (115)
289 3nqo_A MARR-family transcripti 23.6 41 0.0014 28.8 2.6 37 399-443 55-91 (189)
290 3ke2_A Uncharacterized protein 23.5 1.1E+02 0.0038 24.2 4.7 29 302-330 32-60 (117)
291 2ia0_A Putative HTH-type trans 23.4 32 0.0011 29.2 1.8 46 389-442 19-64 (171)
292 3iz6_V 40S ribosomal protein S 23.3 40 0.0014 26.5 2.1 35 418-452 69-103 (108)
293 3qp6_A CVIR transcriptional re 23.2 81 0.0028 28.7 4.7 41 286-328 197-237 (265)
294 2q0o_A Probable transcriptiona 23.1 82 0.0028 27.9 4.6 41 286-328 175-215 (236)
295 1rp3_A RNA polymerase sigma fa 23.1 87 0.003 27.2 4.8 36 288-325 189-225 (239)
296 2pex_A Transcriptional regulat 23.1 32 0.0011 28.0 1.7 44 392-443 52-95 (153)
297 3deu_A Transcriptional regulat 23.1 34 0.0012 28.6 1.9 45 391-443 57-102 (166)
298 3hhh_A Transcriptional regulat 23.0 43 0.0015 26.5 2.4 57 383-442 9-65 (116)
299 3tqn_A Transcriptional regulat 23.0 33 0.0011 26.9 1.6 31 418-449 42-72 (113)
300 3f3x_A Transcriptional regulat 22.9 25 0.00087 28.3 1.0 25 419-443 60-84 (144)
301 3neu_A LIN1836 protein; struct 22.8 33 0.0011 27.5 1.6 32 418-450 46-77 (125)
302 2b0l_A GTP-sensing transcripti 22.8 59 0.002 25.0 3.1 43 294-338 33-76 (102)
303 2k9l_A RNA polymerase sigma fa 22.7 1.2E+02 0.0041 21.9 4.6 36 292-327 35-72 (76)
304 3oou_A LIN2118 protein; protei 22.7 1.2E+02 0.0041 23.0 4.9 28 301-328 19-46 (108)
305 3lst_A CALO1 methyltransferase 22.6 89 0.003 29.5 5.0 34 302-337 54-87 (348)
306 3htu_A Vacuolar protein-sortin 22.6 84 0.0029 23.1 3.6 35 302-336 26-69 (79)
307 3k2z_A LEXA repressor; winged 22.6 39 0.0013 29.2 2.2 55 384-446 6-61 (196)
308 2cyy_A Putative HTH-type trans 22.5 37 0.0013 27.9 2.0 44 391-442 11-54 (151)
309 2w25_A Probable transcriptiona 22.4 35 0.0012 28.0 1.8 46 389-442 9-54 (150)
310 3oio_A Transcriptional regulat 22.4 1.2E+02 0.0042 23.1 5.0 28 301-328 21-48 (113)
311 1ub9_A Hypothetical protein PH 22.0 43 0.0015 24.8 2.1 45 391-443 20-64 (100)
312 2ek5_A Predicted transcription 22.0 85 0.0029 25.2 4.0 39 298-338 22-61 (129)
313 3boq_A Transcriptional regulat 22.0 31 0.0011 28.2 1.4 47 389-443 49-96 (160)
314 3s2w_A Transcriptional regulat 22.0 35 0.0012 28.0 1.8 47 389-443 52-98 (159)
315 1z7u_A Hypothetical protein EF 21.9 62 0.0021 25.0 3.1 51 392-451 27-80 (112)
316 3jw4_A Transcriptional regulat 21.5 37 0.0013 27.4 1.8 45 391-443 45-91 (148)
317 1of9_A Pore-forming peptide am 21.5 92 0.0032 22.4 3.8 58 99-161 7-66 (77)
318 2lfc_A Fumarate reductase, fla 21.5 65 0.0022 26.9 3.3 25 304-328 96-120 (160)
319 4hbl_A Transcriptional regulat 21.4 32 0.0011 28.0 1.3 47 389-443 43-89 (149)
320 2fsw_A PG_0823 protein; alpha- 21.4 64 0.0022 24.7 3.1 51 392-451 30-83 (107)
321 3by6_A Predicted transcription 21.3 75 0.0025 25.4 3.5 39 298-338 29-68 (126)
322 3e6m_A MARR family transcripti 21.3 46 0.0016 27.3 2.4 46 390-443 56-101 (161)
323 3u5c_Z RP45, S31, YS23, 40S ri 21.2 49 0.0017 26.0 2.2 36 417-452 67-102 (108)
324 2z99_A Putative uncharacterize 21.2 85 0.0029 28.0 4.1 34 295-328 22-55 (219)
325 2k9s_A Arabinose operon regula 21.0 1.6E+02 0.0055 22.1 5.4 27 302-328 19-45 (107)
326 3edp_A LIN2111 protein; APC883 20.9 43 0.0015 30.1 2.2 32 418-450 42-73 (236)
327 4aik_A Transcriptional regulat 20.9 34 0.0012 28.2 1.4 28 419-446 56-85 (151)
328 1u2w_A CADC repressor, cadmium 20.8 45 0.0015 26.4 2.1 51 391-449 46-96 (122)
329 2fxa_A Protease production reg 20.7 48 0.0016 29.0 2.4 26 418-443 71-96 (207)
330 2fbi_A Probable transcriptiona 20.6 39 0.0013 26.8 1.7 46 390-443 39-84 (142)
331 2ek5_A Predicted transcription 20.5 51 0.0017 26.6 2.3 31 418-449 37-67 (129)
332 1or7_A Sigma-24, RNA polymeras 20.4 1.2E+02 0.004 25.4 4.9 36 289-326 143-179 (194)
333 3ic7_A Putative transcriptiona 20.4 46 0.0016 26.6 2.1 35 415-450 41-75 (126)
334 3eyy_A Putative iron uptake re 20.4 81 0.0028 25.8 3.6 52 285-338 15-71 (145)
335 3c7j_A Transcriptional regulat 20.1 93 0.0032 27.7 4.3 41 297-339 43-83 (237)
336 3neu_A LIN1836 protein; struct 20.1 84 0.0029 24.9 3.6 38 299-338 32-70 (125)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=5.2e-95 Score=789.05 Aligned_cols=440 Identities=34% Similarity=0.603 Sum_probs=409.9
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|++.|+..|++||+++|.+++.+.... ...+|..||+.|+++|++|+.++..||++|+.|..
T Consensus 306 my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~--------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~ 377 (760)
T 1ldj_A 306 MYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA--------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVA 377 (760)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS--------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 7999999999999999999999999999999875321 12578999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 012914 81 ALKEAFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLAR 154 (453)
Q Consensus 81 ~l~~af~~~~N~~------~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~ 154 (453)
++++||+.|+|.+ .+..++||+||+|||.+||++. ++.++++++..|++++.||+|+++||+|+.+|+++||+
T Consensus 378 al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~Lak 456 (760)
T 1ldj_A 378 ALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAK 456 (760)
T ss_dssp HHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999986 2346899999999999999865 45678999999999999999999999999999999999
Q ss_pred HHcCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCC
Q 012914 155 RLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKS 234 (453)
Q Consensus 155 RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~~ 234 (453)
|||.+++.+.|.|+.||++||.+||.+||++|++||+|+..|++++..|++++.++ ...+++|+|.|||+++||..+.
T Consensus 457 RLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~ 534 (760)
T 1ldj_A 457 RLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQS 534 (760)
T ss_dssp HHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCC
T ss_pred HhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999987651 1246899999999999999888
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhC
Q 012914 235 SDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLN 314 (453)
Q Consensus 235 ~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~ 314 (453)
.++.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+.+|++||++.||
T Consensus 535 ~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~ 614 (760)
T 1ldj_A 535 CTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQ 614 (760)
T ss_dssp SCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhHhhhcccceeecCC-----CCCCCCCCCeEEEccCCCCCcceeeccCCCc----hhhhhhHHhHHHhhh
Q 012914 315 LTHDDLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSKFTDRMRRIKIPLPPV----DERKKIVEDVDKDRR 385 (453)
Q Consensus 315 i~~~~l~~~L~sL~~~k~~iL~~~~-----~~~~i~~~~~f~~N~~f~~~~~~i~i~~~~~----~e~~~~~~~v~~~R~ 385 (453)
+++++++++|.+|+ +.+||.+.| +++.+.+++.|++|.+|++++.||+|+.+.. +|..++.+.+.+||+
T Consensus 615 i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~ 692 (760)
T 1ldj_A 615 IKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 692 (760)
T ss_dssp CCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHH
Confidence 99999999999997 568998554 6788999999999999999999999986543 234456788999999
Q ss_pred hhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 386 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 386 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
+.|+||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 693 ~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 693 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred hHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.8e-94 Score=784.74 Aligned_cols=434 Identities=40% Similarity=0.711 Sum_probs=408.0
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|++.|+..|++||+++|.+++.+.. .+..||+.|+++|++|+.++..||++|+.|..
T Consensus 322 mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~-------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~ 388 (759)
T 2hye_C 322 MYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE-------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVN 388 (759)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGG-------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcc-------------cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 79999999999999999999999999999996531 23579999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHcCCC
Q 012914 81 ALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 160 (453)
Q Consensus 81 ~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~ 160 (453)
++++||+.|+|.+. .++||+||+|||.+||+|. ++.+++|++..|++|+.||+|+++||+|+.+|+++||+|||.++
T Consensus 389 al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~ 465 (759)
T 2hye_C 389 LMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGK 465 (759)
T ss_dssp HHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999864 5799999999999999864 45678899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCChhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCCcCC
Q 012914 161 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLP 240 (453)
Q Consensus 161 s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP 240 (453)
+++.|.|+.||++||.+||.+||++|++||+|+..|++++..|++++.+.+ ...+++|+|.|||+++||.++..++.+|
T Consensus 466 s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP 544 (759)
T 2hye_C 466 SASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLT 544 (759)
T ss_dssp CSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCC
T ss_pred CCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCceEEEEeCCCCCCCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999876432 2346899999999999999988899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHH
Q 012914 241 SEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDL 320 (453)
Q Consensus 241 ~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l 320 (453)
++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++++++++||++||+||++||+.+.+|++||++.||+++++|
T Consensus 545 ~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l 624 (759)
T 2hye_C 545 PEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSEL 624 (759)
T ss_dssp HHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhcccceeecCCCCCCCCCCCeEEEccCCCCCcceeeccCCCc----hhhhhhHHhHHHhhhhhhcceeeehh
Q 012914 321 VRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPV----DERKKIVEDVDKDRRYAIDAALVRIM 396 (453)
Q Consensus 321 ~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~f~~~~~~i~i~~~~~----~e~~~~~~~v~~~R~~~i~A~IVRim 396 (453)
+++|++|+++|.+||.++|+++++.+++.|.+|.+|+++..||+|+.++. +|..++.+.+.+||++.|+|||||||
T Consensus 625 ~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIM 704 (759)
T 2hye_C 625 RRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIM 704 (759)
T ss_dssp HHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999878999999999999999999999999999999999986432 34556778899999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 397 KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 397 K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
|+||+|+|++|+.+|+++++ |+|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 705 K~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 705 KMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred hhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 99999999999999999998 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.7e-86 Score=666.33 Aligned_cols=357 Identities=32% Similarity=0.508 Sum_probs=325.1
Q ss_pred CCChHHHHHHHHHHHhhcCC-CCCCChHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q 012914 96 GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKL 174 (453)
Q Consensus 96 ~~~~~e~La~y~d~~l~~~~-~~~~~~~~~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~L 174 (453)
..++||+||+|||.+||+|. .++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35789999999999999862 24568999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC--hhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCCcCCHHHHHHHHHHH
Q 012914 175 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYK-SSDLNLPSEMVKCVEVFK 251 (453)
Q Consensus 175 k~~~G~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~-~~~~~lP~~l~~~~~~f~ 251 (453)
| +||. +||++|++||+|+..|++++..|++++.+.+....+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9996 99999999999999999999999998764432223689999999999999874 578999999999999999
Q ss_pred HHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 252 GFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 252 ~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
+||..+|+||+|+|.|++|+|+|++++++++++++||++||+||++||+. +.+|++||++.||++.++|+++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999986 7999999999999999999999999986
Q ss_pred c---ccceeecCCC---CCCCCCCCeEEEccCCCCC-----cceeeccCCC------chhhhhhHHhHHHhhhhhhccee
Q 012914 330 A---KYKILLKEPN---TKTISQSDHFEFNSKFTDR-----MRRIKIPLPP------VDERKKIVEDVDKDRRYAIDAAL 392 (453)
Q Consensus 330 ~---k~~iL~~~~~---~~~i~~~~~f~~N~~f~~~-----~~~i~i~~~~------~~e~~~~~~~v~~~R~~~i~A~I 392 (453)
. |++||.++|. ++++.++|.|.+|.+|+++ .++++|+.++ ..+.+++.+.+.+||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEE
Confidence 3 5679998875 3568889999999999862 2567776532 13445677889999999999999
Q ss_pred eehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 393 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 393 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
|||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred ehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 4
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.94 E-value=1.8e-28 Score=190.89 Aligned_cols=82 Identities=32% Similarity=0.689 Sum_probs=79.2
Q ss_pred hhhhhhHHhHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 371 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 371 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
+|..++.+.+.+||++.|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||.|||||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 012914 451 YLA 453 (453)
Q Consensus 451 Yia 453 (453)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 5
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.94 E-value=1.2e-28 Score=187.43 Aligned_cols=75 Identities=49% Similarity=0.781 Sum_probs=73.5
Q ss_pred hHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 379 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 379 ~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
.+++||++.|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.94 E-value=2.4e-28 Score=192.32 Aligned_cols=82 Identities=49% Similarity=0.748 Sum_probs=77.3
Q ss_pred hhhhhHHhHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEe
Q 012914 372 ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 451 (453)
Q Consensus 372 e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 451 (453)
|..++.+.+.+||++.|+||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 44556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 012914 452 LA 453 (453)
Q Consensus 452 ia 453 (453)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 7
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=1.5e-27 Score=190.43 Aligned_cols=81 Identities=56% Similarity=0.837 Sum_probs=76.9
Q ss_pred hhhhhhHHhHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 371 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 371 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
+|..++.+.+.+||++.|+||||||||++|+|+|++|+.+|+++++ |.|++.+||+|||.|||||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 3455667889999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ecC
Q 012914 451 YLA 453 (453)
Q Consensus 451 Yia 453 (453)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 8
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=99.66 E-value=8.1e-17 Score=163.17 Aligned_cols=99 Identities=22% Similarity=0.417 Sum_probs=75.4
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|++.|+..|++||+++|.+++.+.... .+|..||+.|+++|++|+.++..||++|+.|..
T Consensus 299 mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~~----------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~ 368 (410)
T 4ap2_B 299 MYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEG----------KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQ 368 (410)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHhccccc----------cChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7999999999999999999999999999999876431 368899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHhh
Q 012914 81 ALKEAFEIFCNKAVGGSSSSELLATFCDNILK 112 (453)
Q Consensus 81 ~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~ 112 (453)
++++||+.|+|.+. +.||+||+|||.--.
T Consensus 369 al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 369 TIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHccCccc
Confidence 99999999999974 678999999997433
No 9
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=99.41 E-value=3.1e-13 Score=136.15 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=78.0
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|+++|+..|++||+++|.+++....+.. ..+|..||+.|+++|++|+.++..||++|+.|..
T Consensus 296 mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~~--------~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~ 367 (391)
T 2wzk_A 296 MFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETI--------TTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLT 367 (391)
T ss_dssp HHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGGT--------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhccccc--------cCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 79999999999999999999999999999987543221 2478899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 012914 81 ALKEAFEIFCNKAV 94 (453)
Q Consensus 81 ~l~~af~~~~N~~~ 94 (453)
++++||+.|+|.++
T Consensus 368 al~~af~~fiN~~~ 381 (391)
T 2wzk_A 368 ARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCch
Confidence 99999999999863
No 10
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=135.30 Aligned_cols=81 Identities=26% Similarity=0.521 Sum_probs=71.4
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|+++|+..|++||+++|.+++.+. .++..||+.|+++|++|+.++..||++|+.|..
T Consensus 273 mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~-------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~ 339 (354)
T 4a64_A 273 LYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP-------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFIN 339 (354)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC-------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc-------------cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7999999999999999999999999999999752 235579999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 012914 81 ALKEAFEIFCNKAV 94 (453)
Q Consensus 81 ~l~~af~~~~N~~~ 94 (453)
++++||+.|+|.++
T Consensus 340 al~~af~~fiN~~~ 353 (354)
T 4a64_A 340 AMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHTC-----
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999999864
No 11
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=99.32 E-value=1.4e-13 Score=137.36 Aligned_cols=83 Identities=22% Similarity=0.507 Sum_probs=26.6
Q ss_pred CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 012914 1 MYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHK 80 (453)
Q Consensus 1 ly~L~~r~~~~l~~l~~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~ 80 (453)
||+||+|+++|+++|+..|++||+++|.+++.+.... .+|..||+.|+++|++|+.++..||++|+.|..
T Consensus 282 mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~----------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~ 351 (364)
T 4eoz_B 282 MYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEG----------KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQ 351 (364)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHTC-----------------------------------------------------
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCcccc----------CChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7999999999999999999999999999999876431 368899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 012914 81 ALKEAFEIFCNKA 93 (453)
Q Consensus 81 ~l~~af~~~~N~~ 93 (453)
++++||+.|+|.+
T Consensus 352 al~~af~~fiN~n 364 (364)
T 4eoz_B 352 TIAGDFEYFLNLN 364 (364)
T ss_dssp -------------
T ss_pred HHHHHHHHhhcCc
Confidence 9999999999964
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.54 E-value=0.11 Score=38.02 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=46.3
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
.|...|.+|.+..++|-. .|..+.+++..||+.|.+.|-|.=-=+|++.|+||+
T Consensus 12 Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 356678888888877765 488999999999999999999988878899999985
No 13
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=89.41 E-value=0.35 Score=36.08 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=34.2
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCC
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTI 344 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i 344 (453)
...|+.||++.+|++...+.+.|..|. +.++|.+.+.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 689999999999999999999999996 45788777654433
No 14
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=88.62 E-value=0.67 Score=35.56 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=41.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+..+..||..+.+...+|..||++.+|++...+.++|..|.. .+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~--~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD--EGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 467888888887777899999999999999999999999963 5677654
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.71 E-value=0.25 Score=51.72 Aligned_cols=136 Identities=10% Similarity=0.111 Sum_probs=49.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhc---ccceeecCCCCCCCCCCCeEEEccCCCCCcceee
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCA---KYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIK 364 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~---k~~iL~~~~~~~~i~~~~~f~~N~~f~~~~~~i~ 364 (453)
+..+..||....+...+|..+|++.+|++...+.+.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4567788877777889999999999999999999999999751 13566653 36788877642211000
Q ss_pred ccCCCchhhhhh-HHhHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 365 IPLPPVDERKKI-VEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 365 i~~~~~~e~~~~-~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+ .....-+ ...+ + ....+..|+..++.++.++-.|+.+.+ ..+.......|..|+++|-|++..
T Consensus 500 -~---~~~~~~~~~~~~--~-~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -E---PSPFSPVRYLST--D-QAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c---cccccccccccC--C-hhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEEeC
Confidence 0 0000000 0000 1 234567899999999999988877743 256677899999999999999976
Q ss_pred CCCC
Q 012914 444 ENPN 447 (453)
Q Consensus 444 ~d~~ 447 (453)
..++
T Consensus 565 ~gr~ 568 (583)
T 3lmm_A 565 GGRS 568 (583)
T ss_dssp ----
T ss_pred CCCc
Confidence 5443
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.60 E-value=0.85 Score=37.62 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=44.3
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 285 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+.+|+.|..||......+ +|..+|++.+|++...+.+.|..|.. .+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~--~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVK--EGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeEecc
Confidence 457899999999988888 99999999999999999999999974 47777643
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.02 E-value=1.6 Score=33.60 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=39.8
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
++....||....+ ..+|+.||++.+|++...+.++|..|.. .+++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEE
Confidence 3556677777766 7899999999999999999999999964 57776543
No 18
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.88 E-value=0.77 Score=37.94 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG--QGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeecc
Confidence 5788999998887777899999999999999999999999974 46777643
No 19
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=86.77 E-value=0.65 Score=38.27 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=45.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
.+|..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~--~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK--KDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCeEecC
Confidence 36789999999888888999999999999999999999999974 46777653
No 20
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=86.64 E-value=0.66 Score=36.05 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~--~glv~~ 66 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK--RGFVRR 66 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 5778888998887777899999999999999999999999974 467764
No 21
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=86.12 E-value=1.8 Score=32.04 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
.||..+.+...+|..||++.+|++...+.+.|..|.. .+++...+.+. ..+..|.++.+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeccCC--CCcEEEEEChh
Confidence 4555555556899999999999999999999999974 46676432211 12345666554
No 22
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.07 E-value=0.98 Score=33.52 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEcc
Q 012914 291 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 354 (453)
Q Consensus 291 Qa~ILllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~ 354 (453)
+..||.++.+.. .+|..||++.+|++...+.++|..|.. .+++...+. ....|.++.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~--~G~I~~~g~-----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK--KGKLQKEAG-----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH--HTSEEEECS-----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEecCC-----CCCceEecC
Confidence 355655554444 899999999999999999999999963 456665432 125566543
No 23
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.04 E-value=1.6 Score=33.47 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=43.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
+..+..||..+ ...+|+.||++.+|++...+.++|..|.. .+++.... +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~--~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEA--GFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEC--------CEEEECCC
Confidence 35566677666 45699999999999999999999999964 46776542 26777654
No 24
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.02 E-value=0.63 Score=38.37 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=41.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~--~Glv~r~ 84 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEG--RNLVRRE 84 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEeec
Confidence 46789999999888888999999999999999999999999974 4777764
No 25
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=85.44 E-value=1.4 Score=36.83 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~--~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA--RGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 5789999999888888999999999999999999999999974 4677654
No 26
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=85.24 E-value=1 Score=37.32 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=44.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE--KKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 46789999999888888999999999999999999999999974 4777764
No 27
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.90 E-value=0.87 Score=37.02 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=42.3
Q ss_pred EEcHHHHHHHHhhcCCCC--cCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDR--LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~--~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||..+.+... +|..||++.++++...+.++|..|.. .+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~--~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE--KEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEee
Confidence 467889999987765555 99999999999999999999999974 4677653
No 28
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.45 E-value=0.85 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~--~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQ--SGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeeCC
Confidence 5789999998887778999999999999999999999999974 47777653
No 29
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.42 E-value=1.5 Score=35.93 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||.... .+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE--MGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH--CCCEEee
Confidence 4788999998887 78899999999999999999999999974 4677654
No 30
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=84.08 E-value=0.71 Score=38.06 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=43.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~--~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR--KELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH--CCCeeccC
Confidence 5789999998887778999999999999999999999999974 46777643
No 31
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.98 E-value=1.2 Score=36.56 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~--~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES--QGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCeeec
Confidence 467788888887 7778899999999999999999999999974 4677654
No 32
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=83.92 E-value=1 Score=38.12 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~ 93 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLA--NGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CcCeEec
Confidence 5688999998887778999999999999999999999999974 4677764
No 33
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.89 E-value=0.86 Score=37.06 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 286 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
.+|..|..||...... +.+|..+|++.++++...+.+.|..|.. .+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ--EDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH--TTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEecC
Confidence 4578888888776655 7899999999999999999999999974 46776643
No 34
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=83.84 E-value=1.3 Score=32.85 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..+.-+..||..+.+. ..+|.+||++.+ +++...+.+.|..|.. .+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~--~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD--AGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCeEEE
Confidence 4567888899888775 589999999999 9999999999999974 4677654
No 35
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.67 E-value=1.1 Score=33.41 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 294 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 294 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
|+...+++..+++.||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 566677888999999999999999999999999974 3566554
No 36
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.57 E-value=1.2 Score=37.06 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
+|..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS--LGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEe
Confidence 5789999998887778899999999999999999999999974 467765
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.53 E-value=0.96 Score=36.83 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||.....++.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~--~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE--SGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999998887778999999999999999999999999974 4677653
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.40 E-value=1.1 Score=36.68 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||....... .+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~ 80 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER--KKLIYRY 80 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeec
Confidence 5678888888776554 899999999999999999999999974 4677654
No 39
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=83.13 E-value=1.1 Score=34.73 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=39.2
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|.. .+++...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEee
Confidence 45667766655433 66899999999999999999999999964 4677654
No 40
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=82.85 E-value=1.5 Score=35.76 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=41.7
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+ .+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI--KKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH--CCCEEee
Confidence 5678888888776655 899999999999999999999999974 4677654
No 41
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=82.77 E-value=1.4 Score=36.53 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~--~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQR--AGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeeec
Confidence 5788999998887777899999999999999999999999974 4677654
No 42
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.62 E-value=1.5 Score=36.89 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=43.3
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~glv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLE--RGFIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeee
Confidence 36788999998887778999999999999999999999999974 4677654
No 43
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.32 E-value=2.3 Score=31.92 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEcc
Q 012914 291 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 354 (453)
Q Consensus 291 Qa~ILllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~ 354 (453)
+..||..+.+.. .+|..||++.+|++...+.++|..|.. .+++.+.+. ....|.++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~--~G~I~~~g~-----~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK--KGKLQKEAG-----TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEESS-----SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEecCC-----CCCeeEEeC
Confidence 455665555444 899999999999999999999999963 456665431 125566654
No 44
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.31 E-value=1.2 Score=36.25 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC--KGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHH--CCCEEec
Confidence 4678999998887777899999999999999999999999974 4677654
No 45
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.17 E-value=3.9 Score=31.54 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=43.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
++....||....+ +..|+.||++.+|++...+.++|..|.. .+++.....+. ...|+++..
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSS----CCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCC----EEEEEECcH
Confidence 3455566666655 4699999999999999999999999964 57776544322 235666553
No 46
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=81.59 E-value=1.1 Score=37.87 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=43.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~--~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVD--EGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEeeC
Confidence 5688999998887777999999999999999999999999974 47777653
No 47
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=81.56 E-value=0.95 Score=36.87 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 5788999998887778899999999999999999999999974 4677653
No 48
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=81.54 E-value=2.6 Score=34.02 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=39.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++.+..||..+.....+|+.||++.+|++...+.++|..|.. .+++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~--~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYK--QGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 345566776666556799999999999999999999999964 5677654
No 49
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=81.45 E-value=0.88 Score=33.95 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=36.6
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
|...++.++.++.+||.. +|..+...|.+-|+.|.++|+|+|.
T Consensus 7 Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 555667777888777765 4899999999999999999999997
No 50
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=81.35 E-value=1.2 Score=33.89 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=35.9
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 294 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 294 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
|+...++.+.+++.||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~--~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEA--MGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHT--TCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 566677888999999999999999999999999963 3555554
No 51
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=81.33 E-value=1.4 Score=35.90 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 46788999998887777899999999999999999999999974 4666654
No 52
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.29 E-value=2.4 Score=31.88 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
-||.+..+.. .|+.||++.+|++...+.++|..|.. -+++.+.
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~--eG~I~~~ 63 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQR--SAMVYSS 63 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHH--HTSSEEC
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 3444444444 99999999999999999999999963 3566654
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=80.85 E-value=1.5 Score=37.32 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||..... .+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~GlV~r~ 101 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED--KGLISRQ 101 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH--CCCEEee
Confidence 56789999987766 56799999999999999999999999974 4777765
No 54
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=80.72 E-value=1.2 Score=36.36 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~--~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK--RGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 45788999998887777999999999999999999999999974 4666653
No 55
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=80.70 E-value=1.5 Score=36.44 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA--AGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeec
Confidence 5788999998887778899999999999999999999999974 4677654
No 56
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=80.54 E-value=4.6 Score=34.38 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=42.1
Q ss_pred HHHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 290 YQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 290 ~Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++..... +++.|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECS-----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEecC-----CCCceEecCC
Confidence 44444455443 3479999999999999999999999996 4678764321 2456777553
No 57
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=80.43 E-value=1.3 Score=37.83 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=43.6
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~--~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVG--AELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEec
Confidence 46788999998887777899999999999999999999999974 4677654
No 58
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=80.39 E-value=2.4 Score=34.75 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=38.1
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..+|.... ..+++|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 3456665554432 346799999999999999999999999974 4677764
No 59
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.31 E-value=1.5 Score=36.85 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA--DGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 5788999998887778899999999999999999999999974 4666653
No 60
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=80.20 E-value=1.1 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 5788999998887777899999999999999999999999974 4677654
No 61
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.94 E-value=1.2 Score=36.49 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~--~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA--DGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998887777899999999999999999999999974 4666653
No 62
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=79.90 E-value=1.8 Score=33.29 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHH----HHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEI----MTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei----~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+| ++.++++...+.+.|..|.. .+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~--~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ--EGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 356789999988888889999999 89999999999999999974 4677653
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.84 E-value=1.7 Score=35.83 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||..... .+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~--~glv~r~ 83 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER--GGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCEeeC
Confidence 357889999988776 77899999999999999999999999974 4677654
No 64
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=79.70 E-value=1.6 Score=36.06 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998887777899999999999999999999999974 3666653
No 65
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.16 E-value=1.8 Score=36.17 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK--RGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999998877767899999999999999999999999974 4666653
No 66
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.00 E-value=1.3 Score=36.79 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ--KNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeec
Confidence 36788999998887777899999999999999999999999974 4677654
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=78.99 E-value=1.4 Score=36.24 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 4677888888777777899999999999999999999999974 3666654
No 68
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=78.57 E-value=1.5 Score=36.07 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQ--QGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHH--HTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHH--CCCEEec
Confidence 5788999998887777899999999999999999999999974 4677654
No 69
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.55 E-value=1.1 Score=37.78 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVD--EGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 4567888888777778899999999999999999999999974 4677654
No 70
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.53 E-value=1.2 Score=34.31 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=42.7
Q ss_pred EEEEEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 283 IELIVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 283 ~~l~vs~~Qa~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
....++..|..||....+ .+.++..||++.++++...+.++|..|.. .+++.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 334567889999987765 56899999999999999999999999974 35665
No 71
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=78.52 E-value=3 Score=35.65 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
+.+.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++..
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s 60 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTG 60 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 444455555555679999999999999999999999996 4567654
No 72
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=78.44 E-value=5.2 Score=33.31 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHHHHHhhcCC-CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEcc
Q 012914 291 QAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 354 (453)
Q Consensus 291 Qa~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~ 354 (453)
++.+.+.-+.. ..+|.++|++.+++|...+.+.|..|. +.+++..... .++.|.+..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar 72 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVRG-----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECSS-----SSSEEEESS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecCC-----CCCCeeecC
Confidence 34444443433 469999999999999999999999996 4577764321 245677654
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.31 E-value=2.1 Score=35.40 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|.. .+++.+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv~r~ 87 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE--RGLVVRT 87 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT--TTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5678888888765 444789999999999999999999999973 4777764
No 74
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.12 E-value=1.3 Score=36.22 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~--~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER--DGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5788999998887777899999999999999999999999974 4666653
No 75
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=78.01 E-value=2.1 Score=31.69 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~--kGlv~r~ 60 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK--KGALNHH 60 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH--CCCeEEE
Confidence 36788999998877777899999999996 688999999999974 4677664
No 76
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=78.00 E-value=1.5 Score=34.32 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=43.1
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEecC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 453 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yia 453 (453)
+..|++++-....++..||...+.. .-.++..-|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 4555556655566777777665432 123578899999999999999999874 56888865
No 77
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=77.90 E-value=1 Score=37.38 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=36.0
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||...... +.+|..+|++.++++...+.+.+..|.. .+++.+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~--~Glv~r~ 90 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK--KGYIERR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH--TTSBCCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEee
Confidence 567888888776655 7899999999999999999999999974 4677664
No 78
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=77.80 E-value=1 Score=34.38 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=36.1
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
|...++.++.++..||.. .|..+...|.+-|+.|.++|+|+|..
T Consensus 7 Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455566677777777665 48999999999999999999999973
No 79
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=77.71 E-value=3.1 Score=31.02 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCChH-HHHHHHhHhhhcccceeecC
Q 012914 289 TYQAATLLLFNTSDRLSYSEIMTQLNLTHD-DLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 289 ~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~-~l~~~L~sL~~~k~~iL~~~ 338 (453)
..+--||.+.......|..+|++.+|++.. .+.++|..|.. -+++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~--eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER--QGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH--TTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH--CCCEEec
Confidence 345566766666678999999999999999 99999999963 4566544
No 80
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.56 E-value=1.6 Score=35.92 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|+.|..||......+. |..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~--~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEA--KGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 467889999988877777 9999999999999999999999974 4677654
No 81
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.49 E-value=1.7 Score=36.17 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
.+|..|..||... ..+++|..+|++.+|++...+.+.+..|.. .+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~--~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLN--AELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH--TTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEe
Confidence 4578899999888 778999999999999999999999999974 467765
No 82
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=77.39 E-value=1 Score=33.52 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=43.0
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
..|.+++-....++..+|...+-.. -..+..-+...|+.|.++|||+|..+ ...+.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 3344555556678888888877542 23578889999999999999999874 4567774
No 83
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=77.29 E-value=1.3 Score=31.71 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCC-CCcCHHHHHHHhCCChHHHHHHHhHhhhc
Q 012914 290 YQAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCA 330 (453)
Q Consensus 290 ~Qa~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 330 (453)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|...
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566666544 47999999999999999999999999753
No 84
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.20 E-value=1.9 Score=35.99 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=40.6
Q ss_pred EcHHHHHHHHhh--cCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllF--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|..||... ++.+.+|..+|++.++++...+.+.+..|.. .+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~--~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR--SGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCEEEee
Confidence 567777777654 4556799999999999999999999999973 47777653
No 85
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=76.67 E-value=4 Score=34.13 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.9
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 287 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 287 vs~~Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+|..|+.||..... .+..+..+|++.++++...+.+.+..|.. .+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~--~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE--KGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh--CCCeEeec
Confidence 67889999887754 45788899999999999999999999974 46777653
No 86
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=76.63 E-value=2.2 Score=37.26 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||..... .+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~--~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK--NGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 78899999987664 56899999999999999999999999974 4677764
No 87
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=76.28 E-value=2.1 Score=35.45 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=24.0
Q ss_pred hccCCCCChhHHHHHHHhhhhhccccc
Q 012914 415 LSRMFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 415 l~~~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
++.+...++..|-+.|..|+++|||+|
T Consensus 57 LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 57 LQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 445677899999999999999999999
No 88
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=76.22 E-value=1.7 Score=36.34 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~--~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK--DGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH--HTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 678899999888 5777899999999999999999999999974 4677764
No 89
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=75.84 E-value=2.7 Score=36.27 Aligned_cols=65 Identities=6% Similarity=0.079 Sum_probs=42.3
Q ss_pred cCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 267 YSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 267 ~~lg~~~i~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
++.+++.+...- .-...++..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~ 72 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIK 72 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeE
Confidence 344555555432 123357788889998888778999999999999999999999999964 35654
No 90
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=75.81 E-value=3 Score=32.58 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.6
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++.+..||..+. ...+|+.||++.+|++...+.++|..|.. .+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~--~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKS--VHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 355666666655 45789999999999999999999999964 5677643
No 91
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=75.79 E-value=2.3 Score=33.42 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=38.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++.+..||..+ ..+.+|+.||++.+|++...+.++|..|.. .+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQA--CGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEE
Confidence 35667777766 445799999999999999999999999964 4677643
No 92
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=75.64 E-value=2.7 Score=34.86 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=41.1
Q ss_pred EEEEcHHHHHHHHhhc---C--CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 284 ELIVSTYQAATLLLFN---T--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 284 ~l~vs~~Qa~ILllFn---~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++-+|.-++.+|+.+- + ....|.++|++.+|++..++.+.|+.|.. .++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4567788888887643 3 34689999999999999999999999975 356654
No 93
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=75.20 E-value=6.6 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=33.8
Q ss_pred HHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 295 LLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 295 LllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+..+.+.+..|..+|+..+|++...+.++|-+|.. .+.+.+.
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k--kG~V~~~ 62 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQK--EDTVKMV 62 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHH--CCCEecC
Confidence 44666777799999999999999999999999963 3455444
No 94
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=75.15 E-value=5.6 Score=33.24 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
+.+.+.+.-+....+|..+|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 444444444444579999999999999999999999996 457776432 1345666544
No 95
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=74.98 E-value=2 Score=38.16 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~--~GlV~r~ 95 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEE--RGYLRFS 95 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 5788999998877777899999999999999999999999974 4677664
No 96
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=74.85 E-value=2.4 Score=43.70 Aligned_cols=130 Identities=12% Similarity=0.136 Sum_probs=84.1
Q ss_pred cCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccCCCCCcceeeccCCCchhhhhhHH
Q 012914 299 NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVE 378 (453)
Q Consensus 299 n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~f~~~~~~i~i~~~~~~e~~~~~~ 378 (453)
..++.+|+.+|...|+++...++.+|-.|.. .+++...+.+. ....|.+|.+ .-..+++.|- .-
T Consensus 29 l~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk--------~l- 92 (534)
T 2xub_A 29 IRTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR--------YI- 92 (534)
T ss_dssp HHHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH--------HH-
T ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH--------HH-
Confidence 3457899999999999999999999999974 56665432210 1234555432 1111222220 00
Q ss_pred hHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccC----CCCChhHHHHHHHhhhhhccccccCC
Q 012914 379 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRM----FKPDIKAIKKRMEDLITRDYLERDKE 444 (453)
Q Consensus 379 ~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~LIereyi~R~~~ 444 (453)
...+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 93 ~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 93 YTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 0111222223366666667788999999999988765321 12578899999999999999999874
No 97
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=74.72 E-value=8.2 Score=31.16 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 301 SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 301 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
...+|..+|++.+|+|...+.+.|..|.. .+++..... .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~--~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRN--AGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEecCC-----CCCceEeCCC
Confidence 45799999999999999999999999964 567764321 2345766543
No 98
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=74.57 E-value=3.1 Score=32.21 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=43.4
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHH-HhCCChHHHHHHHhHhhhcccceee
Q 012914 285 LIVSTYQAATLLLFNTSDRLSYSEIMT-QLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~~~~t~~ei~~-~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
..++..|+.||.........|..+|++ ..+++...+-+++.+|.. -+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r--~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIK--KGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHT--TTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHH--CCCee
Confidence 356789999999887777999999999 999999999999999963 46675
No 99
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=74.27 E-value=6 Score=28.60 Aligned_cols=57 Identities=7% Similarity=0.148 Sum_probs=42.6
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccCCC
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFT 357 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~f~ 357 (453)
.-.|.-+|.++.-||+.+|.+.|+=|+..|+.+|..++ ++.+.++ -...|.+-++|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34566789999999999999999999999999998874 4554432 134566655553
No 100
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.94 E-value=2.3 Score=32.40 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|.. .+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~--~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER--NGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567778887666556899999999999999999999999964 466654
No 101
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=73.33 E-value=4 Score=33.29 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=40.2
Q ss_pred EEEcHHHHHHHHhh---cC-C-CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 285 LIVSTYQAATLLLF---NT-S-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 285 l~vs~~Qa~ILllF---n~-~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+-++.-|+.||+.+ ++ . ...|.++|++.+|++..++.+.|..|.. .++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~--kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ--KGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH--TTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEe
Confidence 44667777777554 33 2 2489999999999999999999999974 46777643
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=73.04 E-value=6.2 Score=28.07 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.++.-|..|+.++ ..++|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567778888777 4567999999999999999998887764
No 103
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=72.92 E-value=3 Score=38.27 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=42.7
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.++..|..||..+.+.+.+|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~--~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKK--FGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 35678889998876667899999999999999999999999964 4677653
No 104
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=72.80 E-value=4.7 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-----CCChHHHHHHHhHh
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSL 327 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL 327 (453)
++.|+.+.+....+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44555556667789999999999 99999999999855
No 105
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=72.06 E-value=7.5 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
.|--+.++...+|+.+|++.+|++++++..+|-.|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 3445667777999999999999999999999999974
No 106
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=71.91 E-value=5.6 Score=33.00 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
+..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEK--DGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEE
Confidence 345677888888888999999999999999999999999964 456654
No 107
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=71.30 E-value=4.3 Score=37.48 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHhhcCC-CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 292 AATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 292 a~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
..||.+|.+. ..+|+.||++.+|++...+.+.|..|.. .+.|.+.+. +..|.+-..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCC------CCcEEcCHH
Confidence 3577788864 6899999999999999999999999974 577876532 356766544
No 108
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=70.46 E-value=7 Score=28.91 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.++.-|..|+.++ ..++|..||++.+|++...+...+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777777776 4578999999999999999998887664
No 109
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=70.14 E-value=6.7 Score=31.24 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=38.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++.+..||..+.+ ...++.||++.+|++...+.++|..|.. .+++...
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEE
Confidence 4566777766664 4689999999999999999999999964 5677654
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=70.02 E-value=7.3 Score=29.54 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=35.5
Q ss_pred EEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 284 ELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 284 ~l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
...+|.-|..||.++- .++|..||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456788888887776 578999999999999999999998875
No 111
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=69.88 E-value=6.1 Score=35.94 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 292 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 292 a~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
..||..|.+.. .+|+.||++.+|++...+.+.|..|.. .+++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE--EFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT--TTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeCC------CCeEEECHH
Confidence 35677787654 799999999999999999999999974 577776432 345666543
No 112
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=69.83 E-value=4.5 Score=31.36 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred EEcHHHHHHHHhhcCC------CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 286 IVSTYQAATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
-+++.|..+|..+.+. ..++..+|++.++++...+.+.|..|.. .+++..
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~--~GLV~r 68 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA--AGLADV 68 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH--CCCEEe
Confidence 3678899998765543 6799999999999999999999999963 466654
No 113
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=69.79 E-value=2.6 Score=33.18 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+..||..+.+ ..+|+.||++.+|++...+.++|..|.. .+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKS--GGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 3455555554 6789999999999999999999999964 4677653
No 114
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=69.43 E-value=5.1 Score=33.33 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES--RGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4667778888777777899999999999999999999999964 456643
No 115
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=68.35 E-value=2.4 Score=35.90 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=38.8
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||..... ...+|..+|++.++++...+.+.+..|.. .+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD--RGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEeec
Confidence 56788888887666 45899999999999999999999999974 4677764
No 116
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.50 E-value=2.5 Score=32.43 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=38.9
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
|...+.....++..+|...+. ..+..+...+-+.|..|.++|||+|..+.+..+.
T Consensus 13 iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 344444556777777755443 3566899999999999999999999765444433
No 117
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=67.04 E-value=4.8 Score=32.94 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=39.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
+..+..||..+..+..+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345667787777777899999999999999999999999964 456653
No 118
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=66.66 E-value=4.9 Score=37.44 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.0
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 292 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 292 a~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|.. .+.|.+.
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~ 78 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARS 78 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 35777887654 799999999999999999999999975 5778765
No 119
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=66.63 E-value=6.5 Score=32.48 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=39.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
++..+-.||....+...+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 50 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIK 50 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeE
Confidence 3456777887777777899999999999999999999999964 35664
No 120
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.20 E-value=5.9 Score=34.00 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=41.7
Q ss_pred EEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 283 IELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 283 ~~l~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
....++..+..||........+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~ 62 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIE 62 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred CcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 34456778888888888778899999999999999999999999964 35654
No 121
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=65.92 E-value=4.1 Score=32.60 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|..|..||...-+.+++|..||++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK--KEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH--CCceEEE
Confidence 46889999998877778899999999997 578999999999974 4677654
No 122
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=65.84 E-value=6.8 Score=32.55 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
++..+..||..+.+...+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 4567778888888888999999999999999999999999964 35654
No 123
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.76 E-value=5 Score=29.58 Aligned_cols=58 Identities=3% Similarity=0.115 Sum_probs=42.8
Q ss_pred eeeehhccC--CCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEe
Q 012914 391 ALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 451 (453)
Q Consensus 391 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 451 (453)
.|...+... +.++..||...+.+.. ...+..-|-+.|+.|.+.|+|.|...+.+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 455566554 5799999998876532 246889999999999999999997653344444
No 124
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.54 E-value=9.6 Score=27.49 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
+|.-|..|+.++ ..++|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456667777766 4578999999999999999988887664
No 125
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=65.49 E-value=9 Score=31.79 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++...
T Consensus 12 l~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~ 56 (145)
T 1xd7_A 12 IHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSR 56 (145)
T ss_dssp HHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred HHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEee
Confidence 344444444444 5 999999999999999999999996 56788643
No 126
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=65.48 E-value=7.5 Score=30.77 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 289 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 289 ~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
..|..||..+.+ ...|+.+|++.+|++...+.++|..|.. .+++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567777777666 6789999999999999999999999964 456543
No 127
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=65.30 E-value=8 Score=31.68 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhC----CChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNT-SDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~-~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||...-+ .+.+|..||++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK--KNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 57889999988776 57899999999998 799999999999974 4677654
No 128
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=65.30 E-value=7 Score=32.56 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=40.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
++..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 53 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIIT 53 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcc
Confidence 4567778888887778999999999999999999999999964 35554
No 129
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=65.20 E-value=6.1 Score=31.46 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=37.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++....||.+..+ +.+|+.||++.+|++...+-++|..|.. .+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 3455566666654 5789999999999999999999999964 5777654
No 130
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.88 E-value=8.2 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.++.-|..|+.++ ..++|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677777888776 4578999999999999999998887764
No 131
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=64.82 E-value=7.2 Score=32.46 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++..+..||....+...+|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4566777888887778899999999999999999999999964 355543
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=63.78 E-value=6.9 Score=35.94 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCC--CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 286 IVSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
.+|+.|..||......+ .+|..||++.++++...+.+.+..|.. .+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~--~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK--QGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--HTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEeeC
Confidence 35789999998776654 599999999999999999999999963 47777654
No 133
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=63.12 E-value=4.4 Score=32.25 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|..|..||......+.+|..+|++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~--~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYK--KGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH--CCCeEEE
Confidence 46788999998776677899999999999 779999999999974 4677653
No 134
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=62.81 E-value=11 Score=34.40 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=36.9
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 292 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 292 a~ILllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|.. .+++.+.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEC
Confidence 45777776554 799999999999999999999999974 4677653
No 135
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.78 E-value=8 Score=29.86 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=42.1
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 286 IVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
.++..|..|+-+..+ .++++..+|...++++...+.++|..|.. .+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 568899999988766 56899999999999999999999999974 255553
No 136
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=62.70 E-value=5.8 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=45.0
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 285 LIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..+|..|..||....++ +.+|..||++.++++...+.+.|..|. +.+++.+.
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~ 453 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKK 453 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 34788999999988877 889999999999999999999999996 34677664
No 137
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=61.16 E-value=9 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=40.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
++..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++.
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 55 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVR 55 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEe
Confidence 4566777888777777899999999999999999999999964 35554
No 138
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=60.90 E-value=11 Score=31.32 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.0
Q ss_pred EcHHHHHHHHhhcCC-----CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 287 VSTYQAATLLLFNTS-----DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 287 vs~~Qa~ILllFn~~-----~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
+|..|..||...... +.+|..+|++.++++...+.+.+..|.. .+++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEE
Confidence 567899888776554 3589999999999999999999999963 35663
No 139
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=60.56 E-value=24 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHh
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLH 325 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~ 325 (453)
.++|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999888763
No 140
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=60.48 E-value=5.8 Score=36.42 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 286 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
.+|..|..||....++ +++|..||++.++++...+.+.|..|.. .+++.+..
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~--~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK--HSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH--TTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH--CCCEEecC
Confidence 4788999999887663 5899999999999999999999999963 46776643
No 141
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=60.38 E-value=9 Score=30.51 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=50.6
Q ss_pred hhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 383 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 383 ~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
-++-.++.+|..++. .+.++--+|...+.+...+.+.++...+-..+..|.++|||++.
T Consensus 8 ~~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 345667888888887 47788889999998877767899999999999999999999986
No 142
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=59.82 E-value=4.2 Score=32.79 Aligned_cols=57 Identities=14% Similarity=0.328 Sum_probs=41.2
Q ss_pred hcceeeehhccCCC--CChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC--CCCC--ceEec
Q 012914 388 IDAALVRIMKSRKV--LGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPN--MFRYL 452 (453)
Q Consensus 388 i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~--~d~~--~y~Yi 452 (453)
.+..|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 35666777766655 8888886654 258899999999999999999853 3333 35554
No 143
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=59.21 E-value=13 Score=25.00 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHhhCChhhHhHHHHHHHHH
Q 012914 151 KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 194 (453)
Q Consensus 151 ~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~ 194 (453)
-+.+|++.......+.-..|+..|+..-|.......-+|++-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46788887777778888899999998889888888888887653
No 144
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=59.21 E-value=7.6 Score=29.83 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=32.6
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
++....||..+-..++.|+.||++.+|++...+-++|..|..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455556663333345789999999999999999999999963
No 145
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=59.08 E-value=9.8 Score=34.96 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=36.6
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 293 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 293 ~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+.
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~ 71 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSR 71 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 56777864 45899999999999999999999999974 4677664
No 146
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=58.81 E-value=5.6 Score=32.39 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=23.5
Q ss_pred cCCCCChhHHHHHHHhhhhhccccccC
Q 012914 417 RMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 417 ~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356678999999999999999999954
No 147
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=58.62 E-value=9.5 Score=29.71 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.7
Q ss_pred hcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 298 FNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 298 Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
...++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 28 ~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 28 LDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 34555799999999999999999999999974 4666543
No 148
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=58.53 E-value=7 Score=31.13 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=41.2
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
..|.+++-....++..+|...+.. ...++..-+...|+.|.++|||+|..++ ..+.|.
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 344455555566777777776542 1235788999999999999999998754 467764
No 149
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=58.49 E-value=7.5 Score=29.42 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCC-CcCHHHHHHHhCCChHH-HHHHHhHhhhcccceee
Q 012914 291 QAATLLLFNTSD-RLSYSEIMTQLNLTHDD-LVRLLHSLSCAKYKILL 336 (453)
Q Consensus 291 Qa~ILllFn~~~-~~t~~ei~~~t~i~~~~-l~~~L~sL~~~k~~iL~ 336 (453)
+..+|..+...+ .+|..||++.+|++... +.+.|..|.. .+++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~--~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR--AGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH--TTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH--CCCee
Confidence 445666666655 79999999999999999 9999999964 35554
No 150
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.44 E-value=18 Score=25.26 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=29.4
Q ss_pred EcHHHHHHHHhh---cCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 287 VSTYQAATLLLF---NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 287 vs~~Qa~ILllF---n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
++.-|-.|+.+. +...++|+.||++.+|++...+...+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555555443 23467899999999999999888876654
No 151
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=57.24 E-value=17 Score=29.02 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 289 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 289 ~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
+.+..||..+.+ ..+++.+|++.+|++...+.++|..|.. .+++..
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~ 91 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSY 91 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 455566666654 5789999999999999999999999974 466654
No 152
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.13 E-value=15 Score=23.24 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=25.3
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
.|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45555543 5799999999999999998877543
No 153
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=56.01 E-value=4.2 Score=34.94 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhcCCC---CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|..|..||......+ .+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~--~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE--KGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH--HTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CcCEEec
Confidence 5778888888776544 399999999999999999999999974 4677654
No 154
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=55.82 E-value=11 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
-|+.++- .++|..||++.+|++...+..++....
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444443 367999999999999999999887764
No 155
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=55.73 E-value=16 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCC-ChHHHHHHHhHhhh
Q 012914 292 AATLLLFNTSDRLSYSEIMTQLNL-THDDLVRLLHSLSC 329 (453)
Q Consensus 292 a~ILllFn~~~~~t~~ei~~~t~i-~~~~l~~~L~sL~~ 329 (453)
..|--+.|+...+|+.+|++.+|+ +++++..+|-.|..
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 345566788789999999999999 99999999999964
No 156
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.65 E-value=10 Score=27.84 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=32.5
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
|.+.+...+.++..||-.. +..+...+.+.+..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4455555566777776654 446888899999999999999964
No 157
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=55.61 E-value=13 Score=34.32 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=42.5
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccCC
Q 012914 292 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKF 356 (453)
Q Consensus 292 a~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~f 356 (453)
..||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHHH
Confidence 357777875 46899999999999999999999999974 4677653 2567775543
No 158
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=55.51 E-value=17 Score=30.53 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceee
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 336 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~ 336 (453)
....||....+...+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 3446777888888999999999999999999999999964 35554
No 159
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=55.01 E-value=8.5 Score=28.96 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
+|.-|..|+.++ ..++|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666666666 3578999999999999999998887664
No 160
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=54.43 E-value=3.7 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=22.9
Q ss_pred CCCChhHHHHHHHhhhhhccccccCCCC
Q 012914 419 FKPDIKAIKKRMEDLITRDYLERDKENP 446 (453)
Q Consensus 419 F~~~~~~ik~~Ie~LIereyi~R~~~d~ 446 (453)
|..+..-|..-|..|.++|||+|+.+-+
T Consensus 34 lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 34 AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 3346777999999999999999987543
No 161
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=54.28 E-value=15 Score=33.53 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHhhcCC-CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccC
Q 012914 291 QAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 355 (453)
Q Consensus 291 Qa~ILllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~ 355 (453)
...||.+|... ..+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHH
Confidence 34577788754 5799999999999999999999999974 4677653 256776554
No 162
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=54.20 E-value=4.2 Score=32.38 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=40.2
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
|..++...+.++..+|...+-.. ...+.+-+...|+.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 33344445678888888776542 235788899999999999999998764 456654
No 163
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.68 E-value=20 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=27.6
Q ss_pred cHHHHHHH-Hhh--cCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 288 STYQAATL-LLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 288 s~~Qa~IL-llF--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+.-|-.|+ +.| .+..++|+.||++.+|++...+...+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444 333 23357899999999999999888765543
No 164
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=53.59 E-value=18 Score=27.97 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=26.5
Q ss_pred cHHHHHHH-Hhhc--CCCCcCHHHHHHHhCCChHHHHHHHh
Q 012914 288 STYQAATL-LLFN--TSDRLSYSEIMTQLNLTHDDLVRLLH 325 (453)
Q Consensus 288 s~~Qa~IL-llFn--~~~~~t~~ei~~~t~i~~~~l~~~L~ 325 (453)
+.-|-.|+ +.|- +...+|++||++.+|++...++..+.
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444444 4442 34689999999999999988776554
No 165
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=53.13 E-value=14 Score=28.61 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+...||.... .+..++.||++.+ |++...+.+.|..|.. .+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~--~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEA--DGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 3445555444 4679999999999 9999999999999964 4777654
No 166
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=52.84 E-value=13 Score=32.50 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
-|-.||.+.+++..+|++||++.+++++..+++-|.-|.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467888899999999999999999999999999999885
No 167
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=52.32 E-value=21 Score=26.43 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=28.1
Q ss_pred cHHHHHHHH-hh--cCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 288 STYQAATLL-LF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 288 s~~Qa~ILl-lF--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+.-|-.|+. .| .+...+|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444443 33 33467999999999999999888766543
No 168
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.69 E-value=18 Score=29.15 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=37.2
Q ss_pred EEcHHHHHHHHhh----cCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 286 IVSTYQAATLLLF----NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 286 ~vs~~Qa~ILllF----n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
.++..|.-+|..+ .....+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4555555555433 3456899999999999999999999999974 366664
No 169
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=51.64 E-value=12 Score=31.40 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=38.6
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++....||.+.. ...+|+.||++.+|++...+-++|..|.. .+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 456677777666 45799999999999999999999999964 5677643
No 170
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=51.61 E-value=7 Score=29.16 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=39.6
Q ss_pred ceeeehhccCC---CCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 390 AALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 390 A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
-.|..+|+... .++..+|-.+ +..+...|.++|..|.+.|+|.+.+..+..|
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~--------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 33566777777 7888777665 3367889999999999999999876555443
No 171
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=51.61 E-value=8.2 Score=29.28 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=35.2
Q ss_pred EcHHHHHHHHhhcC-CCC---cCHHHHHHHhCCChHHHHHHHhHhhhccccee
Q 012914 287 VSTYQAATLLLFNT-SDR---LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKIL 335 (453)
Q Consensus 287 vs~~Qa~ILllFn~-~~~---~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL 335 (453)
++.-+..||+.+.. .+. +|..+|++.++++...+.+.|..|.. .+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 45566666665532 233 99999999999999999999999964 3555
No 172
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=51.48 E-value=13 Score=30.39 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=40.3
Q ss_pred cceeeehhcc-CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEe
Q 012914 389 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 451 (453)
Q Consensus 389 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 451 (453)
+..|++++-. ...++..+|...+.. .-..+..-|...|+.|.++|||+|..++ ..+.|
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~ 69 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRY 69 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEE
Confidence 4445556655 467888887776532 1235788999999999999999998754 46666
No 173
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=51.35 E-value=11 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 289 TYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 289 ~~Qa~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+...||....+ +.+++.||++.+ |++...+.+.|..|.. .+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~--~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEK--DGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHH--CCCEEEe
Confidence 355556654443 578999999999 9999999999999964 4677654
No 174
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=51.35 E-value=2.8 Score=32.73 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=40.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CChHHHHHHHhHhhhcccceeecC
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~--KGlV~R~ 86 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVK--KEMLSTE 86 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH--TTSCEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH--CCCEEEE
Confidence 45677878887766667899999999997 457899999999974 4677664
No 175
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=50.72 E-value=12 Score=30.43 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=32.5
Q ss_pred hhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 297 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 297 lFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+....+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 344456799999999999999999999999964 4677653
No 176
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.48 E-value=19 Score=27.70 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.8
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|..||.++- .++|..||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35667777776664 478999999999999999998887764
No 177
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=49.40 E-value=48 Score=24.08 Aligned_cols=60 Identities=7% Similarity=0.193 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHhhccCh-hHHHHHHHHHHHHHHcCCCCC
Q 012914 99 SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDRSA 162 (453)
Q Consensus 99 ~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~K-D~F~~~Y~~~La~RLL~~~s~ 162 (453)
.-+++.++++.++.++ .+++++...|+.+-..+..+... +.|...|-..+.+-|+.+.++
T Consensus 6 ~C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~P 66 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKP 66 (78)
T ss_dssp HHHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3477889999999853 47899999999998888775444 789999999999988876543
No 178
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=47.93 E-value=22 Score=31.33 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++.+..||.+.. .+.+|+.+|++.+|++...+.++|..|.. .+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~--~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEE--AGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEE
Confidence 456777776665 45799999999999999999999999974 5677653
No 179
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=47.23 E-value=18 Score=28.64 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHh--CCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQL--NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t--~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
++...-.||.+..+...+|+.+|++.+ |++...+.++|..|.. .+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~--~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLAD--HDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHH--TTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHH--CCCEEec
Confidence 355667788777776789999999999 9999999999999964 5777653
No 180
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=46.86 E-value=12 Score=27.54 Aligned_cols=36 Identities=8% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 293 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 293 ~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
-||-.+.+ ...++..+|++.+|++..++.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45655554 4589999999999999999999999995
No 181
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=46.78 E-value=21 Score=29.03 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=37.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+...||.... .+.+++.||++.+ |++...+-+.|..|.. .+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~--~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQ--DGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHH--HTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHH--CCcEEEE
Confidence 345556665544 4679999999999 7999999999999964 4677654
No 182
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=46.74 E-value=11 Score=28.27 Aligned_cols=53 Identities=4% Similarity=0.122 Sum_probs=39.1
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
+..|.+.+.....++..+|-.. +..+...+-+.|..|.+.|+|++..+.+..|
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~--------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRI--------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHH--------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 4456666666667887776664 3468888999999999999999987554443
No 183
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=46.15 E-value=29 Score=30.24 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=39.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+..+..||.+.. .+.+|..||++.+|++...+.+.|..|.. .+++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~--~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKE--AGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 3556667776666 36899999999999999999999999964 4677653
No 184
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.50 E-value=31 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.2
Q ss_pred cHHHHHHHHh-hcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 288 STYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 288 s~~Qa~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+.-|-.|+.+ |- .++|+.||++.+|++...++..+..-
T Consensus 39 ~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 39 SAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445455544 43 36799999999999999888776543
No 185
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.41 E-value=11 Score=30.26 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHhhhhhccccc--cCCCC
Q 012914 419 FKPDIKAIKKRMEDLITRDYLER--DKENP 446 (453)
Q Consensus 419 F~~~~~~ik~~Ie~LIereyi~R--~~~d~ 446 (453)
+..+.+.+-..|..|.++|||+| ++.|+
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 45678889999999999999999 34444
No 186
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.33 E-value=33 Score=23.64 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=27.9
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 287 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 287 vs~~Qa~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
++.-|-.|+.+ |- .++|..||++.+|++...+...+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555543 43 35799999999999999888776654
No 187
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=45.04 E-value=24 Score=27.62 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=36.3
Q ss_pred cHHHHHHHHhhcCCCCcC--HHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 288 STYQAATLLLFNTSDRLS--YSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t--~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..+...||....+ +..+ +.||++.+ |++...+.++|..|.. .+++.+.
T Consensus 26 ~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~--~GlV~r~ 76 (111)
T 3df8_A 26 KKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLID--SGLVERR 76 (111)
T ss_dssp STTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 3455566665553 4445 99999999 9999999999999964 5777754
No 188
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.64 E-value=11 Score=27.59 Aligned_cols=51 Identities=12% Similarity=0.310 Sum_probs=39.0
Q ss_pred eeeehhccCC---CCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 391 ALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 391 ~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
.|..+|+... .++..+|-.. +..+...|.++|..|.+.|+|+|.+..+..|
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~--------Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHH--------HCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 3556777777 7887777664 3367789999999999999999987655443
No 189
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=44.61 E-value=18 Score=33.35 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=30.0
Q ss_pred HHHHHHHh-hcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 290 YQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 290 ~Qa~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+...|+-. .+....+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 34444433 344568999999999999999999999998
No 190
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=43.15 E-value=33 Score=27.94 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+.||.... .+..++.||++.+ |++...|.+.|..|.. .+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~--~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEA--DGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHH--CCCEEEE
Confidence 4556665554 5689999999999 9999999999999964 5777764
No 191
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=43.13 E-value=34 Score=28.23 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
+...||.... .+..++.||++.+|++...+.+.|..|.. .+++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~--~GlI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVE--HGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEEe
Confidence 4444554333 35789999999999999999999999974 57887643
No 192
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=42.01 E-value=26 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-CCChHHHHHHHhHhhhcccceeecC
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
-..||.... .+.+++.||++.+ |++...+.++|..|.. .+++.+.
T Consensus 27 ~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~--~GlV~r~ 72 (107)
T 2fsw_A 27 TLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCG--KGLIKKK 72 (107)
T ss_dssp HHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHH--CCCEEEe
Confidence 334554443 4679999999999 5999999999999964 4677654
No 193
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=41.25 E-value=17 Score=30.16 Aligned_cols=57 Identities=5% Similarity=0.050 Sum_probs=47.6
Q ss_pred hhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 386 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 386 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..++.+|..++.. +.++-.+|..++.+.....+.++...+-..+..|.++|||+|..
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 4567777777754 67888999999888776667899999999999999999999863
No 194
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=41.06 E-value=19 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHhhhhhccccc
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
+...+...+..+|..|.++|||+|
T Consensus 45 ~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 45 KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 355788889999999999999994
No 195
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=40.98 E-value=62 Score=30.55 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
-+..||.+.++...+|.++|++.+|++...+.+.|..|..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4556777778878899999999999999999999999964
No 196
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=40.96 E-value=23 Score=32.02 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=33.8
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
-+.|+.+.. +++.|.++|++.+|+++.++..+|..|. +.+++.+
T Consensus 167 ~~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~ 210 (232)
T 2qlz_A 167 LAILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKI 210 (232)
T ss_dssp HHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEE
T ss_pred HHHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEE
Confidence 334444443 3578999999999999999999999996 4567754
No 197
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.32 E-value=15 Score=30.99 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=39.9
Q ss_pred hcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 388 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 388 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+|..|++.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 456788899999999998887753 47899999999999999999974
No 198
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.26 E-value=10 Score=28.79 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=35.6
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|...+ ..+...+-+.|..|.++|||+|..
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44455555556677877776643 468899999999999999999965
No 199
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=39.48 E-value=46 Score=24.08 Aligned_cols=58 Identities=9% Similarity=0.155 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHhh-ccCh-hHHHHHHHHHHHHHHcCCCC
Q 012914 99 SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDRS 161 (453)
Q Consensus 99 ~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~-l~~K-D~F~~~Y~~~La~RLL~~~s 161 (453)
+-+++.+.++.++ ++ .+++++.+.|+.+...+.. +.+. +.|+..|-..+..-|+...+
T Consensus 6 ~C~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3467788888888 53 2689999999988888776 5555 78999999999999988754
No 200
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=39.05 E-value=28 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=24.1
Q ss_pred CcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 303 RLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 303 ~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
.+|++||++.|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999998
No 201
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=38.63 E-value=23 Score=32.81 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 300 TSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 300 ~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
....+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999998
No 202
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=36.88 E-value=9.4 Score=31.35 Aligned_cols=51 Identities=12% Similarity=0.299 Sum_probs=33.6
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccc----cCCCCCc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER----DKENPNM 448 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R----~~~d~~~ 448 (453)
+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 44455556 67778888876653 3567789999999999999998 6666543
No 203
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.23 E-value=23 Score=29.01 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=35.6
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. ...+...+-..|..|.++|||+|..
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4455566666667777766653 3468888999999999999999864
No 204
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.99 E-value=8.4 Score=29.15 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=33.8
Q ss_pred hccCC-CCChhHHHHHHHHHhccCCCCChhH-HHHHHHhhhhhccccccCCCCCc
Q 012914 396 MKSRK-VLGHQQLVSECVEQLSRMFKPDIKA-IKKRMEDLITRDYLERDKENPNM 448 (453)
Q Consensus 396 mK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~LIereyi~R~~~d~~~ 448 (453)
+.... .++..+|-.. +..+..- +-+.|..|.++|||++++.|+..
T Consensus 24 l~~~~~~~t~~eLa~~--------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 24 FEKKGYEPSLAEIVKA--------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHTTCCCCHHHHHHH--------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHhcCCCCCHHHHHHH--------HCCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 33444 6887777664 3367888 99999999999999988777654
No 205
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.85 E-value=48 Score=26.84 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=46.1
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEc
Q 012914 285 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 353 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N 353 (453)
+.+|.-...||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .+++.+...+ .....|.++
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA--AGLVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEECSS---SSSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--CCcEEEEEeC---CCceEEEeC
Confidence 34667777888777553 579999999998 8999999999999974 4677654211 112457664
No 206
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.54 E-value=39 Score=27.50 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
++.-|-.|+.++ ..++|+.||++.+|++...+...+..-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555566543 357899999999999998887766543
No 207
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.43 E-value=23 Score=27.04 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=32.5
Q ss_pred hhcCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 297 LFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 297 lFn~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+...+.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~--~Gli~~~ 68 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKS--EGLVSSR 68 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTT--SSCCEEE
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 34555677 9999999999999999999999964 4677654
No 208
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.27 E-value=23 Score=28.11 Aligned_cols=48 Identities=4% Similarity=0.206 Sum_probs=31.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc--CCCCC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPN 447 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~ 447 (453)
|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|. +.|+.
T Consensus 38 iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIEN--------MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHH--------CSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHcCCcCHHHHHHH--------HCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 3334444455666555442 446777899999999999999984 44443
No 209
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.98 E-value=31 Score=27.65 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=34.6
Q ss_pred cceeeehh-ccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+ .....++..+|...+ ..+.+.+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 33444555 556677777776643 468888999999999999999964
No 210
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=33.98 E-value=24 Score=32.67 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred HHHHHHHhhc-CCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 290 YQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 290 ~Qa~ILllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+...|+-.+. ..+.+|++||++.|||..+++..+|+.|
T Consensus 194 W~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 194 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 3344444333 3358999999999999999999999988
No 211
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=33.88 E-value=25 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=35.8
Q ss_pred hcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 388 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 388 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
-+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAER--------SFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH--------HTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCcCeEecC
Confidence 34456666666677887777654 3357788999999999999999864
No 212
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=33.87 E-value=39 Score=29.07 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHhhcC-CCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 291 QAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 291 Qa~ILllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
+..||.++.+ ...+|..||++.+|++...+.+.|..|..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456666654 45699999999999999999999999964
No 213
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=33.76 E-value=20 Score=29.24 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=32.7
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
+..|...+.....++..+|-..+ ..+.+.+-..|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 33444555555667776666643 3578889999999999999999
No 214
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=33.70 E-value=45 Score=25.61 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=36.3
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCC-CCChhHHHHHHHhhhhhccccccC--CCCCceEe
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMF-KPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 451 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F-~~~~~~ik~~Ie~LIereyi~R~~--~d~~~y~Y 451 (453)
|.+.+. ...++..+|... . ..+...+-+.|..|.++|+|+|.. .|+....|
T Consensus 19 IL~~L~-~~~~~~~eLa~~--------l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRL--------MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH--------hcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444454 567788777664 3 468899999999999999999854 34444433
No 215
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=33.46 E-value=50 Score=31.58 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=30.5
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 301 SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 301 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
...+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~ 82 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILL 82 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEe
Confidence 46899999999999999999999999975 467865
No 216
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=33.45 E-value=19 Score=29.02 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=31.6
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
|...+.... ++..+|-..+ ..+.+-+-+.|..|.++|||+|..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344445555 8887777653 468888999999999999999865
No 217
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.29 E-value=48 Score=20.93 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=20.7
Q ss_pred CcCHHHHHHHhCCChHHHHHHHhH
Q 012914 303 RLSYSEIMTQLNLTHDDLVRLLHS 326 (453)
Q Consensus 303 ~~t~~ei~~~t~i~~~~l~~~L~s 326 (453)
.+|..+|++.+|++...+.+.+..
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 389999999999999998887654
No 218
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=33.09 E-value=62 Score=24.51 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 292 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 292 a~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.||..... + ++..+|+..+|+++..+.+.+..|.. .+++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~--~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMD--LEIIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 455655554 3 89999999999999999999999964 4677653
No 219
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=33.04 E-value=56 Score=29.19 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
+...+|.++-++..+|+++|+..+|++.+++.+.|..+-
T Consensus 23 ~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 23 LLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 334566677788899999999999999999999999884
No 220
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=32.88 E-value=1.1e+02 Score=27.12 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=57.3
Q ss_pred CcCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEE-----EcHHHHHHHHhhcCCCCcCHHHHHH
Q 012914 237 LNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELI-----VSTYQAATLLLFNTSDRLSYSEIMT 311 (453)
Q Consensus 237 ~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~i~~~~~~~~~~l~-----vs~~Qa~ILllFn~~~~~t~~ei~~ 311 (453)
..=|..+..+.+.++. +|..---.+|++|.+-++ .+..|..||-+......+|..+++.
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~ 176 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAK 176 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3556777777765543 332211123444444343 3358888887777788999999999
Q ss_pred HhCCChHHHHHHHhHhhhcccceeecC
Q 012914 312 QLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 312 ~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|++....+..|..+.. -+++...
T Consensus 177 ~l~ws~~~a~e~L~~~e~--~G~l~~D 201 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAEK--MGHLCRD 201 (218)
T ss_dssp HHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HhCCCHHHHHHHHHHHHH--cCCEEEE
Confidence 999999999999998863 4677664
No 221
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.86 E-value=49 Score=27.15 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=46.9
Q ss_pred EEEcHHHHHHHHhhcC-CCCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEcc
Q 012914 285 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 354 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~ 354 (453)
+.+|.-...||..+.+ ...+|.+||.+.+ +++...+-++|..|.. .+++.+...+ .....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE--SGLVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH--TTSEEEECCT---TSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH--CCCEEEEeeC---CCceEEECCC
Confidence 3466777788876654 4579999999999 8999999999999975 4677654321 1124577663
No 222
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.34 E-value=18 Score=27.20 Aligned_cols=29 Identities=0% Similarity=-0.111 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCC
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPN 447 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~ 447 (453)
.+..+.+-+-+.|..|.++||| +++.|+.
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 3557888999999999999999 5555544
No 223
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=31.86 E-value=31 Score=25.91 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=38.6
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
..|++.+.. +.++..+|...+ ..+...+-+.+..|.+.|+|++....+..|-
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 26 LQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 346666665 677877776653 3577889999999999999998876555553
No 224
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=31.83 E-value=55 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=36.8
Q ss_pred EcHHHHHHHHhhc----C-CCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFN----T-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn----~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|.-|..||.... + ....|+.||++.+|++...+.++|..|.. .+.+.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~--~G~i~~~ 57 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEK--KGYIERK 57 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEECC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH--CCCEEec
Confidence 3566776765432 2 23689999999999999999999999963 3555544
No 225
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=31.77 E-value=26 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=32.3
Q ss_pred ceeeehhccCC--CCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+.... .++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE--------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH--------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 33444444444 5777766553 3467888999999999999999853
No 226
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=31.29 E-value=20 Score=28.99 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.4
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|-.
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 44566667666778887777653 368899999999999999998753
No 227
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=31.12 E-value=21 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=33.9
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 33444455555667776666543 368888999999999999999953
No 228
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.79 E-value=43 Score=30.32 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=32.7
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|-.|+.++ ..++|.+||++.+|++...++..+....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566677777666 3688999999999999999988887653
No 229
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=30.59 E-value=55 Score=28.80 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 294 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 294 ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
|+.+-.++..++..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~--~GlV~r~ 53 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLA--EELLIKD 53 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEEe
Confidence 444445667899999999999999999999999963 4677654
No 230
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.50 E-value=24 Score=28.43 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc--CCCCCc
Q 012914 399 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPNM 448 (453)
Q Consensus 399 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~~ 448 (453)
.+.++..+|-..+ ..+.+-+-..+..|.++|||+|. +.|+..
T Consensus 39 ~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 39 DKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp SSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 4567777766643 35788899999999999999997 445443
No 231
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.47 E-value=70 Score=24.99 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=27.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 287 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 287 vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
++.-|-.|+.+.- ..++|+.||++.+|++...+...+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455555554431 235799999999999999888777654
No 232
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=30.24 E-value=73 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
...|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEec
Confidence 5799999999999999999999999975 5788753
No 233
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=30.10 E-value=27 Score=27.89 Aligned_cols=46 Identities=7% Similarity=0.130 Sum_probs=31.5
Q ss_pred ceeeehhccCC--CCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+-... .++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKA--------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 33444444433 6666665543 3468888999999999999999863
No 234
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.02 E-value=35 Score=27.83 Aligned_cols=46 Identities=7% Similarity=0.049 Sum_probs=32.7
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+..|...+.....++..+|... +..+...+-+.|..|.++|||+|.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 3344444444556666666553 446888999999999999999985
No 235
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=29.49 E-value=28 Score=29.07 Aligned_cols=49 Identities=10% Similarity=0.168 Sum_probs=32.5
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc--CCCCC
Q 012914 391 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPN 447 (453)
Q Consensus 391 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~--~~d~~ 447 (453)
.|...+.....++..+|-.. ...+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATL--------LGVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred HHHHHHHHcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 34444444445555555443 346888899999999999999994 44443
No 236
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=29.47 E-value=67 Score=32.75 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=74.0
Q ss_pred CcCHHHHHHHh----CCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEccCCCCCcceeeccCCCchhhhhhHH
Q 012914 303 RLSYSEIMTQL----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVE 378 (453)
Q Consensus 303 ~~t~~ei~~~t----~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~~f~~~~~~i~i~~~~~~e~~~~~~ 378 (453)
.+|+.+|.+.+ +++.+.+.++|.-|+....+++.+.+++ .++.|.||.. .-.. .-....-+
T Consensus 287 ~is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~--~~~~---------~lr~~~ie 351 (534)
T 2xub_A 287 PLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLH--KALA---------SLATATLE 351 (534)
T ss_dssp CEEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHH--HHHH---------HHHHHHHH
T ss_pred cccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHH--HHHH---------HHHHHHHH
Confidence 67788888766 5667889999998876556777765432 3567877543 1000 00122233
Q ss_pred hHHHhhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 379 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 379 ~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
.+..+|--..=+-|+|+|..++.++-++|-+.+. ....++++.+-.|.+.||+.-.
T Consensus 352 ~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~--------i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 352 SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAM--------IPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHC--------SCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhC--------CCHHHHHHHHHHHHHCCCeEEE
Confidence 4455554444455999999888888877766542 4668899999999999998754
No 237
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=29.41 E-value=82 Score=29.39 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEec
Confidence 4899999999999999999999999975 5788753
No 238
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=29.33 E-value=65 Score=30.01 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
...|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~ 71 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTK 71 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEe
Confidence 5799999999999999999999999975 477864
No 239
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=29.16 E-value=46 Score=26.65 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCChhHHHHHHHhhhhhccccccC
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.+..+.+.+-+.|..|.++|||+|..
T Consensus 63 ~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 63 QLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp TTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred HHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 56678999999999999999999964
No 240
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=29.15 E-value=85 Score=29.70 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCCCCCCCCCeEEEcc
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 354 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~~~i~~~~~f~~N~ 354 (453)
...|++||++.+|+++..+.+.|..|+. .+++... ++.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLE--------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEee--------CCeEecCH
Confidence 5799999999999999999999999975 5788753 24676663
No 241
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.68 E-value=29 Score=28.51 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=35.9
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
+-.|.+.+.....++..+|-.. +..+...+.+++..|.++|+|+|
T Consensus 11 d~~il~~L~~~~~~s~~ela~~--------lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADI--------LNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH--------TTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEE
Confidence 3356667777778888877664 45788999999999999999986
No 242
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=28.62 E-value=27 Score=28.05 Aligned_cols=40 Identities=10% Similarity=0.309 Sum_probs=28.8
Q ss_pred hccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 396 MKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 396 mK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..
T Consensus 46 l~~~~~~t~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 46 IEANEPISQKEIALW--------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHcCCcCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 333355555555443 3468888999999999999999854
No 243
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=28.44 E-value=59 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
...|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~ 84 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVA--IGLLEE 84 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEe
Confidence 5789999999999999999999999975 467765
No 244
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=28.27 E-value=22 Score=29.33 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=34.1
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+...+-+.|..|.++|||+|..
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDR--------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4455566666677777776654 2367888999999999999999954
No 245
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.25 E-value=69 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.1
Q ss_pred EEEcHHHHHHHHhhcC-CCCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecC
Q 012914 285 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~-~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+|.-...||..+.+ ...+|.+||.+.+ +++...+-++|..|.. .+++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK--ENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCcEEEE
Confidence 4566777788876654 4589999999998 7999999999999975 4677653
No 246
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=28.02 E-value=42 Score=26.80 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=32.4
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+. .+.++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANR--------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHh-cCCcCHHHHHHH--------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 33444444 566776666553 4568889999999999999999853
No 247
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.87 E-value=97 Score=29.98 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCCCC---CCCCCCCeEEEccCCC
Q 012914 292 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNT---KTISQSDHFEFNSKFT 357 (453)
Q Consensus 292 a~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~~~---~~i~~~~~f~~N~~f~ 357 (453)
..||-+...+..+|-.||++.||++...+.+.+..|.. .+++...+.. ..=.+...+.+|.++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 45676677778999999999999999999999999975 3566553221 1112344577777643
No 248
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.84 E-value=25 Score=29.08 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=39.2
Q ss_pred eehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEe
Q 012914 393 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 451 (453)
Q Consensus 393 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 451 (453)
.++|...+-++.++|...+.+. ...++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 25 l~~l~~~~h~ta~ei~~~l~~~---~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 25 LEAVDTLEHATPDDILGEVRKT---ASGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHSSBCHHHHHHHHHTT---CTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHhcCCCCHHHHHHHHHhh---CCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 3344443478888888877543 2346889999999999999999986543334444
No 249
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.67 E-value=22 Score=28.73 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=33.3
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEK--------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 3444445544555777666553 3467888999999999999999954
No 250
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=27.63 E-value=61 Score=28.91 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=35.3
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|.-||.+.- .+.|..||++.+|+++..++.++..+.
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788888887774 468999999999999999999998875
No 251
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=27.59 E-value=59 Score=27.52 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=29.4
Q ss_pred HhhcCCCCcCHHHHHHHhC--CChHHHHHHHhHhh
Q 012914 296 LLFNTSDRLSYSEIMTQLN--LTHDDLVRLLHSLS 328 (453)
Q Consensus 296 llFn~~~~~t~~ei~~~t~--i~~~~l~~~L~sL~ 328 (453)
++|-..+.+|.++|++.++ ++.+++...|..|.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 5677778899999999999 99999999999885
No 252
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.58 E-value=33 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=30.0
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
|...+.....++..+|... ...+.+.+-..|..|.++|||+|.
T Consensus 39 iL~~l~~~~~~~~~~la~~--------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKV--------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCHHHHHHH--------HCCChHHHHHHHHHHHHCCCEEec
Confidence 3333444455666665532 346888899999999999999985
No 253
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=27.55 E-value=32 Score=28.20 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=36.4
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|
T Consensus 5 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEE
Confidence 44566777777788888877653 4688999999999999999998
No 254
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=27.40 E-value=57 Score=26.66 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=31.1
Q ss_pred hcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 298 FNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 298 Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
....+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 49 l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~--~Glv~r~ 87 (155)
T 2h09_A 49 IREVGEARQVDMAARLGVSQPTVAKMLKRLAT--MGLIEMI 87 (155)
T ss_dssp HHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 33345789999999999999999999999974 3566543
No 255
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.29 E-value=82 Score=25.19 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=39.0
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecC
Q 012914 287 VSTYQAATLLLFN-TSDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 287 vs~~Qa~ILllFn-~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+|.--..||..+. ....+|.+||.+.+ +++...+-++|..|.. .+++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e--~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS--SGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCEEEE
Confidence 4555667776664 44589999999998 8999999999999974 4677653
No 256
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.24 E-value=54 Score=26.69 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=41.8
Q ss_pred eeeehhcc-CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCceEe
Q 012914 391 ALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 451 (453)
Q Consensus 391 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Y 451 (453)
+|..+|.. ..-++.+||...+.+.. -.++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 34444544 45799999999886532 356889999999999999999997643334444
No 257
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=27.22 E-value=78 Score=27.99 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=35.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|.-||.+.- .+.|..||++.+|++...++.++....
T Consensus 173 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57788888887764 578999999999999999999998775
No 258
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.21 E-value=60 Score=26.84 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.5
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecC
Q 012914 285 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+|.-...||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .+++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDD--AGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--CCcEEEE
Confidence 35677778888777654 579999999998 7999999999999974 4677653
No 259
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.13 E-value=67 Score=25.21 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=28.2
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 287 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 287 vs~~Qa~ILll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
+|+-|..++.+ +-+ ++|..||++.+|++...+...+...
T Consensus 23 L~~~~r~vl~l~y~~--g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45555555544 333 5799999999999999888877654
No 260
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=27.10 E-value=35 Score=27.30 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=30.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 34 iL~~l~~~~~~t~~~la~~--------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAEL--------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCcCcCHHHHHHH--------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3344444455665555553 3468888999999999999999953
No 261
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=26.92 E-value=31 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=31.3
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTE--------LALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHH--------TTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 344444444455555555443 3457777999999999999999865
No 262
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=26.87 E-value=32 Score=28.31 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=33.2
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+...+-+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIF--------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 3444445555556666666543 3468888999999999999999953
No 263
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=26.84 E-value=26 Score=27.09 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=39.1
Q ss_pred cceeeehhccCCCC-ChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCC-CCCceE
Q 012914 389 DAALVRIMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE-NPNMFR 450 (453)
Q Consensus 389 ~A~IVRimK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~-d~~~y~ 450 (453)
...|+..++....+ +..+|.. .|..+..-|.+++..|.+.|+|++.++ ..++|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~--------~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIAD--------RVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 44444666665555 6666655 377899999999999999999998773 245554
No 264
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=26.77 E-value=25 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHhhhhhccccccC
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.+..+.+.+-+.|..|.++|||+|..
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35578888999999999999999953
No 265
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.74 E-value=54 Score=26.52 Aligned_cols=51 Identities=6% Similarity=0.160 Sum_probs=39.0
Q ss_pred eeeehhcc-C-CCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCC
Q 012914 391 ALVRIMKS-R-KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 444 (453)
Q Consensus 391 ~IVRimK~-~-k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~ 444 (453)
+|..++.. . +-++.+||...+.+.. -..+...|=+.|+.|.+.|.|.+-..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 44455554 3 5799999999887642 24688999999999999999998764
No 266
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.57 E-value=27 Score=28.55 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=35.3
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 8 ~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 3466666666778887776653 46889999999999999999873
No 267
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=26.53 E-value=72 Score=30.28 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
..+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~ 81 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEG 81 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEE
Confidence 5799999999999999999999999975 578875
No 268
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=26.16 E-value=77 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred CcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 303 RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 303 ~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
.+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEec
Confidence 899999999999999999999999975 4688753
No 269
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=26.06 E-value=51 Score=25.09 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhH
Q 012914 293 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 326 (453)
Q Consensus 293 ~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~s 326 (453)
.|+...+... +|+.+|++..|++...+.+.|..
T Consensus 11 ~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 11 KIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 4444444443 89999999999999999998864
No 270
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.53 E-value=1.1e+02 Score=23.06 Aligned_cols=28 Identities=0% Similarity=0.141 Sum_probs=23.9
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 301 SDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 301 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+.+|+++|++.+|++...|.+.+....
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4569999999999999999988877653
No 271
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=25.50 E-value=35 Score=29.14 Aligned_cols=55 Identities=4% Similarity=0.158 Sum_probs=44.1
Q ss_pred hcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 388 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 388 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
++-+|..++.. +.++-.+|...+.......+.++...|-..+..|.+.|+|++..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 44556666664 77888999988876665556899999999999999999999864
No 272
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=25.46 E-value=28 Score=29.06 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=35.2
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 391 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 391 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 14 ~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeee
Confidence 466667777778888877653 36888999999999999999973
No 273
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=25.10 E-value=1e+02 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 290 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 290 ~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
....++.+|.+ ++|+++|+..-|++..++..+|..++
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44566677775 67999999999999999999998885
No 274
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=25.08 E-value=98 Score=22.91 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 291 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 291 Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
+-.++....-...++++.|++.++++.+++...|..|+.
T Consensus 18 E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 18 EHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 334444455678999999999999999999999998864
No 275
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.00 E-value=56 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=26.1
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhH
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 326 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~s 326 (453)
+.-|-.|+.+. ...++|++||++.+|++...++..|.-
T Consensus 95 p~~~r~vl~L~-~~~g~s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 95 TPLSRQALLLT-AMEGFSPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp CTTHHHHHTTT-SSSCCCHHHHHHTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444444432 234689999999999999888776643
No 276
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=24.90 E-value=1.2e+02 Score=28.54 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.1
Q ss_pred HHHHhh--cCCCCcCHHHHHHHhCCChHHHHHHHhHhhh
Q 012914 293 ATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 329 (453)
Q Consensus 293 ~ILllF--n~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 329 (453)
.||.++ ++...+|-++|++.+|++...+.++++.|..
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555 5566899999999999999999999999964
No 277
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.79 E-value=72 Score=24.81 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.8
Q ss_pred hcCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 298 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 298 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+..++.+ |..+|++.+|++...+.++|..|.. -+++...
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~--~Gli~~~ 66 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLD--DNVIEKR 66 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4455667 9999999999999999999999974 4677654
No 278
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=24.68 E-value=8.7 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
+|....+.-++.|+.|.++|.|..-..++...+|.
T Consensus 72 RlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 72 KLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp HHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred HhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 57789999999999999999999888778888885
No 279
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=24.61 E-value=69 Score=25.27 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=47.9
Q ss_pred hhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 383 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 383 ~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
-++-.++.+|..++. .+.++--+|...+.+. +.+.++...+=..+..|.+.|+|++.
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 455678888888887 4778888999998764 45689999999999999999999986
No 280
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.47 E-value=32 Score=29.26 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=37.4
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEee
Confidence 44577777777889998887754 36889999999999999999873
No 281
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=24.46 E-value=38 Score=30.53 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=37.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 288 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 288 s~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
++....||.+..+ ..+|+.+|++.+|++...+.++|..|.. .+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~--aGLV~~ 57 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMER--EGVLQS 57 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 3455566666554 6799999999999999999999999964 467765
No 282
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.44 E-value=37 Score=27.44 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=31.8
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~--------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAA--------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 334444444455665555553 3467888999999999999999964
No 283
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=24.20 E-value=37 Score=27.37 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=27.3
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 399 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 399 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
...++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 54 ~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 54 EGDLTVGELSNK--------MYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHH--------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 344555555443 3468888999999999999999853
No 284
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=24.12 E-value=30 Score=28.49 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=36.2
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 441 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R 441 (453)
+..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|
T Consensus 10 d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcce
Confidence 34566777777788888877754 3688999999999999999997
No 285
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.12 E-value=54 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.318 Sum_probs=31.9
Q ss_pred eeeehhc-cCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 391 ALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 391 ~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
.|+..+. ....++..+|-. .+..+..-+.+.+..|.+.|+|.+.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~--------~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIAN--------QLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHH--------TTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444443 222466655544 5778999999999999999999987
No 286
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=24.04 E-value=26 Score=28.12 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=33.8
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGER--------VFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCeEecC
Confidence 3444455555566666666554 2368889999999999999999864
No 287
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.89 E-value=64 Score=22.57 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=19.2
Q ss_pred cCHHHHHHHhCCChHHHHHHHh
Q 012914 304 LSYSEIMTQLNLTHDDLVRLLH 325 (453)
Q Consensus 304 ~t~~ei~~~t~i~~~~l~~~L~ 325 (453)
+|..||++..|++...+-+.|+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999888775
No 288
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=23.86 E-value=37 Score=26.80 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=45.6
Q ss_pred hhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 385 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 385 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+-.++.+|..++. .+.++--+|...+.+ .+.+.++...+=..+..|.+.|+|++.
T Consensus 7 ~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 7 KGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 3556777888886 567888899998877 455689999999999999999999985
No 289
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.63 E-value=41 Score=28.78 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 399 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 399 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.+.++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 55 ~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 55 EEETTLNNIARK--------MGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GGGCCHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345666666543 3467888999999999999999953
No 290
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=23.47 E-value=1.1e+02 Score=24.20 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=25.4
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhc
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCA 330 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 330 (453)
+.-|+..|.+.||||...++..|..|...
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~el 60 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADI 60 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGG
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhC
Confidence 44499999999999999999999999743
No 291
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=23.43 E-value=32 Score=29.19 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=36.9
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 19 d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 33567777777788888887753 46889999999999999999873
No 292
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.29 E-value=40 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=30.2
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
++....+.-+++|+.|.++|.|..-..++...+|.
T Consensus 69 RlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 69 RLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred hhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 56677888999999999999999988888888874
No 293
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=23.17 E-value=81 Score=28.72 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|.-||.+.- .+.|..||++.+|+++..++.++....
T Consensus 197 ~Lt~re~~vl~~~~--~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 197 PLSQREYDIFHWMS--RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56788888888774 578999999999999999999998875
No 294
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.08 E-value=82 Score=27.89 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=34.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 286 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 286 ~vs~~Qa~ILllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+|.-|.-||.+.- .+.|..||++.+|++...++.++....
T Consensus 175 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46778888887764 477999999999999999999998775
No 295
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.08 E-value=87 Score=27.20 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=25.9
Q ss_pred cHHHHHHH-HhhcCCCCcCHHHHHHHhCCChHHHHHHHh
Q 012914 288 STYQAATL-LLFNTSDRLSYSEIMTQLNLTHDDLVRLLH 325 (453)
Q Consensus 288 s~~Qa~IL-llFn~~~~~t~~ei~~~t~i~~~~l~~~L~ 325 (453)
+.-|-.|+ +.|- .++|+.||++.+|++...+...+.
T Consensus 189 ~~~~r~vl~l~~~--~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 189 PEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34444444 4453 468999999999999988876654
No 296
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=23.07 E-value=32 Score=27.98 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=30.4
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..
T Consensus 52 iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGER--------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3334444455555555443 3468888999999999999999964
No 297
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=23.06 E-value=34 Score=28.59 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=30.3
Q ss_pred eeeehhcc-CCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 391 ALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 391 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.|...+.. ...++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~--------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKA--------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHcCCCCCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 33444433 344555555443 3468888999999999999999964
No 298
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=23.02 E-value=43 Score=26.46 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=47.4
Q ss_pred hhhhhhcceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 383 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 383 ~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
-++-.++.+|..++. .+.++--+|...+.+ .+.+.++...+=..+..|.++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 445678888988887 467887899998876 445689999999999999999999986
No 299
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.01 E-value=33 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
.|..+..-|.+++..|.+.|+|++.+. +++|
T Consensus 42 ~~~vSr~tvr~al~~L~~~Gli~~~~~-~G~~ 72 (113)
T 3tqn_A 42 EYQINPLTVSKAYQSLLDDNVIEKRRG-LGML 72 (113)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEecC-CeEE
Confidence 467888999999999999999998874 3444
No 300
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=22.91 E-value=25 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHhhhhhccccccC
Q 012914 419 FKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 419 F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..+.+.+-..|..|.++|||+|..
T Consensus 60 l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 60 YFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCEEecc
Confidence 3468888999999999999999864
No 301
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.80 E-value=33 Score=27.46 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
.|..+..-+.+++..|.+.|+|++.+. +++|+
T Consensus 46 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 77 (125)
T 3neu_A 46 KLAVNPNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCeEEEecC-CEEEE
Confidence 467889999999999999999999874 44443
No 302
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.76 E-value=59 Score=25.01 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHhhcCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 294 TLLLFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 294 ILllFn~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
|+-.+...+.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~ 76 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESR 76 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 33455555666 9999999999999999999999974 4667654
No 303
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=22.68 E-value=1.2e+02 Score=21.85 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHhhcCCC--CcCHHHHHHHhCCChHHHHHHHhHh
Q 012914 292 AATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSL 327 (453)
Q Consensus 292 a~ILllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~sL 327 (453)
..|+-..++.+ ..+.++|+..+|++.+++.++|.-+
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555666665 5789999999999999999988755
No 304
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.65 E-value=1.2e+02 Score=22.96 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.9
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 301 SDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 301 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
.+.+|+++|++.+|++...|.+.+....
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4479999999999999999988877653
No 305
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=22.60 E-value=89 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeec
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 337 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~ 337 (453)
..+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~--~g~l~~ 87 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAV--RDVVRE 87 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCCEEe
Confidence 4799999999999999999999999975 478875
No 306
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=22.57 E-value=84 Score=23.14 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCcCHHHHHHH--------hCCChHHHHHHHhHhhh-cccceee
Q 012914 302 DRLSYSEIMTQ--------LNLTHDDLVRLLHSLSC-AKYKILL 336 (453)
Q Consensus 302 ~~~t~~ei~~~--------t~i~~~~l~~~L~sL~~-~k~~iL~ 336 (453)
..+|+-||.+. -|||+..|.++|..|.. +|+.|+.
T Consensus 26 sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~ 69 (79)
T 3htu_A 26 SVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT 69 (79)
T ss_dssp SEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 37899999883 27999999999999964 5677775
No 307
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.57 E-value=39 Score=29.25 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=34.1
Q ss_pred hhhhhcceeeehhccCC-CCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCC
Q 012914 384 RRYAIDAALVRIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENP 446 (453)
Q Consensus 384 R~~~i~A~IVRimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~ 446 (453)
|+..|=.+|...++.++ ..+..||-..+ ..+..-+.++|..|.++|||+|++..+
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~l--------gl~~~tv~~~l~~Le~~G~i~~~~~~~ 61 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRF--------RITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHc--------CCCcHHHHHHHHHHHHCCCEEecCCCc
Confidence 33444445555555443 56766665542 334446999999999999999987543
No 308
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.54 E-value=37 Score=27.93 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=35.3
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 391 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 391 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
.|++.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 11 ~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 466667777788888877653 46889999999999999999873
No 309
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=22.42 E-value=35 Score=27.97 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=36.1
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhcccccc
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 442 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~ 442 (453)
+..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 44566677767788888877753 36888999999999999999864
No 310
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.41 E-value=1.2e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 301 SDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 301 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
...+|+++|++.+|++...|.+.+....
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3569999999999999999988877653
No 311
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=22.04 E-value=43 Score=24.82 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=32.0
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 391 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 391 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.|...+.....++..+|-.. +..+.+.+-..|..|.+.|||+|..
T Consensus 20 ~iL~~L~~~~~~~~~ela~~--------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKV--------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34444444456666666553 4578889999999999999999643
No 312
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.02 E-value=85 Score=25.18 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.9
Q ss_pred hcCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 298 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 298 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
|..++.+ |..+|++.+|++...+.++|..|.. -+++...
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~--~Gli~~~ 61 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVE--AGILYKK 61 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHT--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEe
Confidence 4455677 9999999999999999999999974 4677654
No 313
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=22.02 E-value=31 Score=28.25 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=32.4
Q ss_pred cceeeehh-ccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+ .....++..+|-.. ...+...+-..|..|.++|||+|..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~--------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGA--------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHH--------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 44455555 44556666665543 3456777899999999999999964
No 314
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=22.00 E-value=35 Score=27.99 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=33.9
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDY--------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3445555555566666666543 3468889999999999999999864
No 315
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=21.86 E-value=62 Score=25.05 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=35.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCC-CCChhHHHHHHHhhhhhccccccC--CCCCceEe
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMF-KPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 451 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F-~~~~~~ik~~Ie~LIereyi~R~~--~d~~~y~Y 451 (453)
|.+.+. .+.++..+|-.. . ..+...+-..|..|.++|||+|.. .|+....|
T Consensus 27 IL~~L~-~~~~~~~eLa~~--------l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 27 LMDELF-QGTKRNGELMRA--------LDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHH-HSCBCHHHHHHH--------STTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH--------hccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444444 356777777654 3 578899999999999999999864 44444444
No 316
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=21.51 E-value=37 Score=27.42 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=26.8
Q ss_pred eeeehhccC--CCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 391 ALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 391 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.|...+... ..++..+|-. .+..+.+.+-..|..|.++|||+|..
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~--------~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQ--------FFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHH--------C------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHhCCCCCCCHHHHHH--------HHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 344444433 5666666554 34467777999999999999999864
No 317
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=21.50 E-value=92 Score=22.43 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHH-hhccCh-hHHHHHHHHHHHHHHcCCCC
Q 012914 99 SSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLL-AYISDK-DLFAEFYRKKLARRLLFDRS 161 (453)
Q Consensus 99 ~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf-~~l~~K-D~F~~~Y~~~La~RLL~~~s 161 (453)
.-+++..+++.++.+ + +++++...|+.+-..+ ..+... ..|...|-..+.+-|..+.+
T Consensus 7 ~C~~vv~~ve~~l~~----n-t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~l~~~~~ 66 (77)
T 1of9_A 7 LCTGLINTLENLLTT----K-GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVD 66 (77)
T ss_dssp HHHHHHHHHHHHCSS----S-CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHH----C-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 346788888988885 3 6888888888887766 333333 67888888888887776543
No 318
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.50 E-value=65 Score=26.91 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.2
Q ss_pred cCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 304 LSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 304 ~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
=|++||++.+|++.+.|++.+...-
T Consensus 96 dTleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3899999999999999999997763
No 319
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=21.44 E-value=32 Score=27.98 Aligned_cols=47 Identities=4% Similarity=0.116 Sum_probs=32.0
Q ss_pred cceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 389 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 389 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 43 q~~iL~~l~~~~~~~~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 43 QYLVMLTLWEENPQTLNSIGRH--------LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 3344444444556666665554 3468888999999999999999864
No 320
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=21.43 E-value=64 Score=24.67 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=36.3
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCC-CChhHHHHHHHhhhhhccccccC--CCCCceEe
Q 012914 392 LVRIMKSRKVLGHQQLVSECVEQLSRMFK-PDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 451 (453)
Q Consensus 392 IVRimK~~k~l~~~~L~~~v~~~l~~~F~-~~~~~ik~~Ie~LIereyi~R~~--~d~~~y~Y 451 (453)
|.+.+. .+.++..+|... .. .+...+-..+..|.++|+|+|.. .|+....|
T Consensus 30 IL~~L~-~~~~~~~eL~~~--------l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRA--------IPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHH--------STTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCcCHHHHHHH--------cccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 445554 567777777653 33 78899999999999999999864 34444444
No 321
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=21.27 E-value=75 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.9
Q ss_pred hcCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 298 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 298 Fn~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+..++.+ |..+|++.+|++...+.++|..|.. -+++...
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~--~Gli~~~ 68 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELEA--QKVIRTI 68 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4455677 9999999999999999999999974 4677654
No 322
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=21.26 E-value=46 Score=27.34 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=31.9
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+.....++..+|-. .+..+.+.+-..|..|.++|||+|..
T Consensus 56 ~~vL~~l~~~~~~t~~eLa~--------~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 56 LRLLSSLSAYGELTVGQLAT--------LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHSEEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 33444444444555555543 35578889999999999999999864
No 323
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=21.23 E-value=49 Score=25.98 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=32.1
Q ss_pred cCCCCChhHHHHHHHhhhhhccccccCCCCCceEec
Q 012914 417 RMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 452 (453)
Q Consensus 417 ~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~Yi 452 (453)
.++....+.-+++|+.|.++|.|..-..++...+|.
T Consensus 67 eRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 67 DRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp HTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred hhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 378899999999999999999999988888888885
No 324
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.22 E-value=85 Score=27.98 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHhhcCCCCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 295 LLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 295 LllFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
-++|-..+.+|+++|++.++++...+...|..|.
T Consensus 22 AlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~ 55 (219)
T 2z99_A 22 ALLLVIDTPVTADALAAATEQPVYRVAAKLQLMA 55 (219)
T ss_dssp HHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3678778889999999999999999999999885
No 325
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=20.99 E-value=1.6e+02 Score=22.12 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHhHhh
Q 012914 302 DRLSYSEIMTQLNLTHDDLVRLLHSLS 328 (453)
Q Consensus 302 ~~~t~~ei~~~t~i~~~~l~~~L~sL~ 328 (453)
..+|+++|++.+|++...+.+.+....
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 579999999999999999988877653
No 326
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.91 E-value=43 Score=30.08 Aligned_cols=32 Identities=9% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
+|..+..-+.+++..|.+.|+|+|... +++|+
T Consensus 42 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 73 (236)
T 3edp_A 42 IYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLYV 73 (236)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEECC-ceEEE
Confidence 488999999999999999999999874 45553
No 327
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.89 E-value=34 Score=28.17 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCCChhHHHHHHHhhhhhcccccc--CCCC
Q 012914 419 FKPDIKAIKKRMEDLITRDYLERD--KENP 446 (453)
Q Consensus 419 F~~~~~~ik~~Ie~LIereyi~R~--~~d~ 446 (453)
+..+.+-+-..|..|.++|||+|. +.|+
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 446888899999999999999875 4444
No 328
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=20.82 E-value=45 Score=26.37 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 391 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 391 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
.|.+.+...+.++..+|-..+ ..+.+.+-+.|..|.+.|+|.+....+..|
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l--------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANIL--------GVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 466666656677777766543 357888999999999999999876555444
No 329
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.72 E-value=48 Score=28.96 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCCCChhHHHHHHHhhhhhccccccC
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
.+..+.+.+-..|..|.++|||+|..
T Consensus 71 ~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 71 FGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 35578899999999999999999964
No 330
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.61 E-value=39 Score=26.82 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=32.0
Q ss_pred ceeeehhccCCCCChhHHHHHHHHHhccCCCCChhHHHHHHHhhhhhccccccC
Q 012914 390 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 443 (453)
Q Consensus 390 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIereyi~R~~ 443 (453)
..|...+.....++..+|-. .+..+.+.+-..|..|.++|||+|..
T Consensus 39 ~~iL~~l~~~~~~t~~ela~--------~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLAN--------QACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHH--------HHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 33444444444555555544 34578889999999999999999864
No 331
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.50 E-value=51 Score=26.56 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCCChhHHHHHHHhhhhhccccccCCCCCce
Q 012914 418 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 449 (453)
Q Consensus 418 ~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y 449 (453)
.|..+..-|.+++..|...|+|++.+. +++|
T Consensus 37 ~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~ 67 (129)
T 2ek5_A 37 FHRINPATARNGLTLLVEAGILYKKRG-IGMF 67 (129)
T ss_dssp HTTCCHHHHHHHHHHHHTTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCcEEEecC-CEEE
Confidence 488899999999999999999999874 4544
No 332
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.39 E-value=1.2e+02 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=25.3
Q ss_pred HHHHHHH-HhhcCCCCcCHHHHHHHhCCChHHHHHHHhH
Q 012914 289 TYQAATL-LLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 326 (453)
Q Consensus 289 ~~Qa~IL-llFn~~~~~t~~ei~~~t~i~~~~l~~~L~s 326 (453)
.-|-.|+ +.+- .++|++||++.+|++...++..+..
T Consensus 143 ~~~r~vl~l~~~--~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 143 EDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444 4343 3589999999999999887776654
No 333
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=20.39 E-value=46 Score=26.62 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=27.2
Q ss_pred hccCCCCChhHHHHHHHhhhhhccccccCCCCCceE
Q 012914 415 LSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 450 (453)
Q Consensus 415 l~~~F~~~~~~ik~~Ie~LIereyi~R~~~d~~~y~ 450 (453)
|...|..+..-|.+++..|.+.|+|++.+. +++|+
T Consensus 41 La~~~~vSr~tvr~Al~~L~~~G~i~~~~~-~G~~V 75 (126)
T 3ic7_A 41 YASIVEVNANTVMRSYEYLQSQEVIYNKRG-IGFFV 75 (126)
T ss_dssp TTTCC-CCSGGGHHHHHHHHTTTSEEEETT-TEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEEcC-CccEE
Confidence 334678888999999999999999999874 45553
No 334
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.35 E-value=81 Score=25.82 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=39.5
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHh-----CCChHHHHHHHhHhhhcccceeecC
Q 012914 285 LIVSTYQAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 285 l~vs~~Qa~ILllFn~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
+.+|.--..||-.+.+.+.+|.+||.+.+ +++...+-|+|..|.. .+++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e--~Glv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEE--LGLVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH--CCcEEEE
Confidence 34566667777666544489999999887 6899999999999975 4676653
No 335
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.14 E-value=93 Score=27.74 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=34.4
Q ss_pred hhcCCCCcCHHHHHHHhCCChHHHHHHHhHhhhcccceeecCC
Q 012914 297 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 339 (453)
Q Consensus 297 lFn~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~~ 339 (453)
.+..++.++..+|++.+|++...+.++|..|.. -+++...|
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~--~Glv~~~~ 83 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEA--QSLLRVET 83 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEeC
Confidence 466777899999999999999999999999964 46776543
No 336
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=20.08 E-value=84 Score=24.94 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=31.0
Q ss_pred cCCCCc-CHHHHHHHhCCChHHHHHHHhHhhhcccceeecC
Q 012914 299 NTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 338 (453)
Q Consensus 299 n~~~~~-t~~ei~~~t~i~~~~l~~~L~sL~~~k~~iL~~~ 338 (453)
..++.+ |..+|++.+|++...+.++|..|.. -++|...
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~--~G~i~~~ 70 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELER--AGYIYAK 70 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCeEEEe
Confidence 344566 7999999999999999999999974 4677654
Done!