Query 012916
Match_columns 453
No_of_seqs 223 out of 1492
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2725 Cytochrome oxidase ass 100.0 1.1E-79 2.4E-84 602.9 18.1 386 38-436 22-408 (411)
2 PTZ00127 cytochrome c oxidase 100.0 4.5E-76 9.8E-81 610.8 38.0 350 83-436 54-403 (403)
3 PF02628 COX15-CtaA: Cytochrom 100.0 1.3E-58 2.9E-63 464.3 31.1 301 97-428 1-302 (302)
4 COG1612 CtaA Uncharacterized p 100.0 1.9E-47 4.1E-52 384.7 31.4 294 98-439 22-318 (323)
5 PF02628 COX15-CtaA: Cytochrom 99.9 2.1E-21 4.5E-26 195.2 16.0 149 290-438 1-156 (302)
6 PTZ00127 cytochrome c oxidase 99.8 3.5E-20 7.6E-25 193.1 18.3 149 93-271 253-402 (403)
7 COG1612 CtaA Uncharacterized p 99.7 6.8E-17 1.5E-21 163.5 14.1 134 299-438 31-165 (323)
8 KOG2725 Cytochrome oxidase ass 99.3 4.5E-12 9.8E-17 126.3 10.3 146 95-271 260-407 (411)
9 COG3038 CybB Cytochrome B561 [ 92.7 9.2 0.0002 36.2 17.0 155 211-384 17-175 (181)
10 PF00033 Cytochrom_B_N: Cytoch 90.7 13 0.00028 33.8 15.0 115 290-428 9-165 (188)
11 PF00033 Cytochrom_B_N: Cytoch 85.6 28 0.0006 31.6 15.5 57 206-268 8-66 (188)
12 PRK11513 cytochrome b561; Prov 85.6 31 0.00068 32.2 16.6 137 211-370 14-152 (176)
13 PF09990 DUF2231: Predicted me 84.6 4.7 0.0001 34.2 7.4 56 174-229 39-99 (104)
14 PF01292 Ni_hydr_CYTB: Prokary 83.1 36 0.00078 30.9 15.1 113 290-428 7-159 (182)
15 PF03188 Cytochrom_B561: Eukar 70.8 70 0.0015 27.9 11.0 88 173-267 33-126 (137)
16 PF01292 Ni_hydr_CYTB: Prokary 69.8 86 0.0019 28.4 15.7 136 207-375 7-167 (182)
17 smart00665 B561 Cytochrome b-5 66.9 74 0.0016 27.7 10.3 48 382-429 71-123 (129)
18 TIGR00351 narI respiratory nit 59.1 1.1E+02 0.0023 29.9 10.7 53 211-264 126-198 (224)
19 smart00665 B561 Cytochrome b-5 58.6 1.2E+02 0.0027 26.3 10.5 87 174-267 33-125 (129)
20 cd03494 SQR_TypeC_SdhD Succina 56.5 1.2E+02 0.0027 25.6 11.1 84 176-268 3-96 (99)
21 PF13301 DUF4079: Protein of u 52.7 71 0.0015 30.1 7.9 48 383-430 84-131 (175)
22 TIGR02125 CytB-hydogenase Ni/F 49.3 2.3E+02 0.0049 26.5 11.3 42 387-428 121-181 (211)
23 PF01654 Bac_Ubq_Cox: Bacteria 49.0 2E+02 0.0043 31.0 11.6 58 172-229 174-237 (436)
24 PF01773 Nucleos_tra2_N: Na+ d 46.4 63 0.0014 26.1 5.7 41 186-230 2-42 (75)
25 PF03188 Cytochrom_B561: Eukar 45.0 2.1E+02 0.0045 24.8 10.4 79 351-429 34-124 (137)
26 COG4244 Predicted membrane pro 44.5 85 0.0019 29.2 6.9 52 178-229 89-145 (160)
27 PRK12438 hypothetical protein; 44.0 6.4E+02 0.014 30.2 25.0 18 171-188 54-71 (991)
28 TIGR00351 narI respiratory nit 37.8 2.2E+02 0.0047 27.8 9.1 43 384-426 123-196 (224)
29 cd08554 Cyt_b561 Eukaryotic cy 37.7 2.7E+02 0.0059 24.1 11.9 79 351-429 35-125 (131)
30 cd00284 Cytochrome_b_N Cytochr 37.0 3.7E+02 0.0081 25.7 10.4 120 281-415 14-139 (200)
31 COG3256 NorB Nitric oxide redu 35.9 7E+02 0.015 28.3 22.7 49 210-259 257-309 (717)
32 COG3038 CybB Cytochrome B561 [ 35.7 3.9E+02 0.0085 25.3 10.3 93 85-205 76-170 (181)
33 PF08229 SHR3_chaperone: ER me 35.0 3.8E+02 0.0082 25.8 9.9 78 353-430 60-151 (196)
34 PF04238 DUF420: Protein of un 34.2 3.5E+02 0.0075 24.3 15.2 26 247-272 76-101 (133)
35 MTH00100 CYTB cytochrome b; Pr 34.2 4.2E+02 0.009 28.0 11.1 96 293-404 34-134 (379)
36 MTH00145 CYTB cytochrome b; Pr 33.8 4.2E+02 0.0091 28.0 11.0 96 293-404 35-135 (379)
37 cd08554 Cyt_b561 Eukaryotic cy 33.5 3.2E+02 0.0069 23.7 12.0 88 173-267 34-127 (131)
38 MTH00191 CYTB cytochrome b; Pr 33.4 3.5E+02 0.0077 28.3 10.4 96 293-404 31-131 (365)
39 MTH00034 CYTB cytochrome b; Va 33.3 4E+02 0.0087 28.1 10.8 95 293-403 34-133 (379)
40 MTH00016 CYTB cytochrome b; Va 32.7 5.2E+02 0.011 27.3 11.5 94 294-403 36-134 (378)
41 cd08761 Cyt_b561_CYB561D2_like 32.4 4.1E+02 0.0089 24.6 10.7 48 383-430 96-150 (183)
42 COG1271 CydA Cytochrome bd-typ 31.9 4E+02 0.0087 29.0 10.6 59 174-232 325-387 (457)
43 MTH00086 CYTB cytochrome b; Pr 31.9 4.6E+02 0.0099 27.5 10.8 95 293-403 23-122 (355)
44 MTH00119 CYTB cytochrome b; Pr 31.5 4.4E+02 0.0095 27.8 10.7 96 292-403 34-134 (380)
45 PRK00068 hypothetical protein; 31.0 9.9E+02 0.022 28.6 24.2 17 172-188 53-69 (970)
46 PLN02680 carbon-monoxide oxyge 30.4 5.4E+02 0.012 25.4 14.9 80 350-429 81-169 (232)
47 MTH00131 CYTB cytochrome b; Pr 30.0 4E+02 0.0086 28.1 10.1 97 292-404 33-134 (380)
48 TIGR02968 succ_dehyd_anc succi 29.7 3.4E+02 0.0073 22.8 11.0 83 176-267 9-101 (105)
49 PF08229 SHR3_chaperone: ER me 29.6 3.9E+02 0.0085 25.7 9.1 85 176-267 60-152 (196)
50 PLN02351 cytochromes b561 fami 29.6 5.7E+02 0.012 25.4 14.4 46 384-429 122-172 (242)
51 PF13940 Ldr_toxin: Toxin Ldr, 29.1 1E+02 0.0022 21.3 3.5 31 163-197 1-31 (35)
52 KOG4050 Glutamate transporter 28.9 4.8E+02 0.01 24.5 9.0 65 353-417 74-148 (188)
53 PF02665 Nitrate_red_gam: Nitr 27.6 3.2E+02 0.007 26.4 8.4 52 179-230 89-144 (222)
54 MTH00224 CYTB cytochrome b; Pr 27.6 3.4E+02 0.0073 28.7 9.0 93 294-402 36-133 (379)
55 PRK03735 cytochrome b6; Provis 27.6 2.6E+02 0.0056 27.4 7.6 110 291-415 43-158 (223)
56 PF09990 DUF2231: Predicted me 27.5 3.7E+02 0.0079 22.4 8.0 56 351-406 39-100 (104)
57 cd08763 Cyt_b561_CYB561 Verteb 27.3 4.7E+02 0.01 23.7 12.1 47 383-429 79-130 (143)
58 cd08765 Cyt_b561_CYBRD1 Verteb 27.0 5E+02 0.011 23.9 10.5 48 383-430 86-138 (153)
59 CHL00070 petB cytochrome b6 26.0 6.2E+02 0.013 24.6 11.8 56 172-227 80-138 (215)
60 MTH00074 CYTB cytochrome b; Pr 25.8 5.3E+02 0.012 27.2 10.1 95 293-403 35-134 (380)
61 cd08760 Cyt_b561_FRRS1_like Eu 24.8 5.6E+02 0.012 23.7 9.6 53 205-267 104-156 (191)
62 PF05875 Ceramidase: Ceramidas 24.6 6.7E+02 0.014 24.5 18.1 17 413-429 217-233 (262)
63 PRK10639 formate dehydrogenase 24.1 6.3E+02 0.014 24.0 11.4 90 173-270 52-171 (211)
64 cd08762 Cyt_b561_CYBASC3 Verte 24.0 6.2E+02 0.014 24.0 9.9 82 180-268 79-163 (179)
65 PF01654 Bac_Ubq_Cox: Bacteria 24.0 9.2E+02 0.02 25.9 21.4 61 344-404 169-236 (436)
66 COG2181 NarI Nitrate reductase 23.8 2.6E+02 0.0056 27.6 6.8 51 181-231 92-146 (228)
67 TIGR01583 formate-DH-gamm form 23.7 6.2E+02 0.013 23.8 15.8 79 350-428 47-163 (204)
68 MTH00033 CYTB cytochrome b; Pr 23.5 8.9E+02 0.019 25.7 11.3 94 294-403 32-130 (383)
69 MTH00156 CYTB cytochrome b; Pr 23.2 4.6E+02 0.01 27.4 9.0 65 292-372 23-90 (356)
70 PRK15006 thiosulfate reductase 22.8 7.6E+02 0.016 24.5 18.6 38 391-428 190-235 (261)
71 PF05084 GRA6: Granule antigen 22.8 95 0.0021 29.0 3.4 29 173-201 146-174 (215)
72 COG1290 QcrB Cytochrome b subu 22.7 6.7E+02 0.015 26.6 10.2 96 294-405 43-145 (381)
73 cd08761 Cyt_b561_CYB561D2_like 22.3 6.2E+02 0.014 23.3 10.7 90 175-269 58-153 (183)
74 PRK11513 cytochrome b561; Prov 22.2 5E+02 0.011 24.1 8.3 65 380-444 7-74 (176)
75 MTH00053 CYTB cytochrome b; Pr 21.2 9.8E+02 0.021 25.3 11.0 94 295-404 37-135 (381)
76 PF11097 DUF2883: Protein of u 20.7 40 0.00087 26.7 0.5 9 123-131 8-16 (75)
77 PF12273 RCR: Chitin synthesis 20.2 91 0.002 27.5 2.7 6 183-188 7-12 (130)
No 1
>KOG2725 consensus Cytochrome oxidase assembly factor COX15 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-79 Score=602.87 Aligned_cols=386 Identities=53% Similarity=0.868 Sum_probs=362.7
Q ss_pred ccCCCccccccccccccccccccccccccccchhhhhhccccccceeeecCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 38 LSSSSSTVARSSLYGFRPLYKGNYMPSWRNMSTAAAVGMENKEGLKLLVTGGPRAQKAVGIWLFGSAAWVFSMVILGGIT 117 (453)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~~Ga~V 117 (453)
.+.++|+.+.+++| +++-++. |||+++...++.+|.+.+++ +..+|.+.+|+++|..++|.+|++||+|
T Consensus 22 ~~~~s~~~~~~~~~--~~l~~~~-------~st~~~~f~~~~~~~~~~~~--~k~~K~Vg~WLlG~sg~Vf~~VvLGGvT 90 (411)
T KOG2725|consen 22 SSRSSPRAQGDSIY--RPLRPGQ-------YSTISQVFLRSGRGSVSLVT--KKASKVVGRWLLGCSGLVFGAVVLGGVT 90 (411)
T ss_pred ccccccccccceee--cccccch-------hhhHHHHHHhccCCccCCCC--cchhhheeeeeeecchhheeeeeeccee
Confidence 44447888999999 6664443 99999999999999999999 9999999999999999999999999999
Q ss_pred hhcCcccCCCCCCC-CCcCCCCChHHHHHHHHhhhcCchhhhcccCCCcccchhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 012916 118 RLTRSGLSMTDWKF-TGSLPPLSDEEWLQEFEKYKQSPEYKRVNKGMSLEDFKFIYWMEYAHRMWGRGLGIIFALPFSYF 196 (453)
Q Consensus 118 r~T~SGL~cpdWP~-~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~~~l~~fk~~~~iE~~HRl~a~~~gl~~l~~~~~~ 196 (453)
|+|+|||++.||.+ .|..||++++||++|||||||.||||.+|.+|++||||||+++||+||++|+.+|++++++++||
T Consensus 91 RLTeSGLSm~~Wk~~~~~~Pp~~qeeW~~EFekYkqsPEfK~lN~~Mtl~EFKfIf~mEy~HRmwGR~iG~vflLPa~Yf 170 (411)
T KOG2725|consen 91 RLTESGLSMVDWKLITEMKPPTSQEEWEEEFEKYKQSPEFKLLNSHMTLDEFKFIFFMEYSHRMWGRAIGLVFLLPAAYF 170 (411)
T ss_pred eecccCcceeeeeeccCcCCCCchHHHHHHHHHHhcCcchhhhccCCcHHHHHHHHHHHHHHHHHhhhhceeehhhhHHH
Confidence 99999999999999 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 012916 197 LRKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLFWTALSVVMPEPP 276 (453)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~~~~~~~~~~~~~ 276 (453)
|++++..+++..++.++..|+++||++|||||++||++..++++.|+||+|+++.|+..|+++++.++|+.+.+-.+..
T Consensus 171 ~~kg~~s~~~~krl~gL~~L~~lQG~iGWwMVKSGLee~~~~~~~PrVSqYRLAtHL~sAf~LY~g~lWtgls~L~~~~- 249 (411)
T KOG2725|consen 171 WRKGRFSPGMKKRLLGLTGLVGLQGLIGWWMVKSGLEEESDSHDVPRVSQYRLATHLGSAFVLYCGSLWTGLSLLLPPA- 249 (411)
T ss_pred HHhcccCcchhhHHHHHHHHHHhccceeEEEeecCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhcCch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998775432
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHH
Q 012916 277 AESVAWVRGAAKVKKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHR 356 (453)
Q Consensus 277 ~~~~~~~~~~~~lr~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR 356 (453)
+.....+...++|+++..+..+++++.+.||+|+|.|||+.+++||+|++.|+||+.|..+|+|||++||++.+|+.||
T Consensus 250 -~~~~~~~kl~~~r~~~~~~~~~v~lTaiSGafVAGlDAG~vYnsfPKMGe~wipd~~f~r~piwrN~~ENp~tVQ~~HR 328 (411)
T KOG2725|consen 250 -QLLSEVSKLLKLRKLAHGTKGLVFLTAISGAFVAGLDAGLVYNSFPKMGESWIPDDMFTRSPIWRNFFENPTTVQFDHR 328 (411)
T ss_pred -hhhHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhcccccceeccccccccccCccccccccHHHHHhhcCCceEEeehh
Confidence 3334456667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012916 357 ILATTTLLSIGALWWSTRKLDIHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGTAHQAGALTLLTLMILLNHTTRK 436 (453)
Q Consensus 357 ~~A~~v~l~~l~l~~~~~r~~~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~lH~~~A~lLl~~l~~L~~~~r~ 436 (453)
++|+.+++.+..+++..+|...+++.+.....+++++..|+.+|+.+.++.+|++++.+||.++..++....++.+++|+
T Consensus 329 ila~tt~~ai~~~~~~~rr~~lpkr~k~ai~~~v~~v~~QatLGv~TLl~yVPv~Laa~HQaGsLalLt~aL~l~~~Lrr 408 (411)
T KOG2725|consen 329 ILAITTVTAITALYLITRRAPLPKRTKMAINVTVAVVTTQATLGVSTLLYYVPVPLAAAHQAGSLALLTSALWLAHELRR 408 (411)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhheeeeeeccchhHhhhhcchHHHHHHHHHHHHHhhc
Confidence 99999999999988888888889999999999999999999999999999999999999999999999999999999998
No 2
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=100.00 E-value=4.5e-76 Score=610.76 Aligned_cols=350 Identities=53% Similarity=0.900 Sum_probs=311.5
Q ss_pred eeeecCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCCcCCCCChHHHHHHHHhhhcCchhhhcccC
Q 012916 83 KLLVTGGPRAQKAVGIWLFGSAAWVFSMVILGGITRLTRSGLSMTDWKFTGSLPPLSDEEWLQEFEKYKQSPEYKRVNKG 162 (453)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~cpdWP~~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~ 162 (453)
+.-++ ++.+|++++|+.+++++++++|++||+||+|||||||||||++|.+||.+++||++||||||++|||+..|++
T Consensus 54 ~~~~~--~~~~~~v~~wl~~~~~l~~~~V~~Gg~tRlT~SGLgcpdWp~~G~~~P~~~~~w~~~f~~yk~~pey~~~~~~ 131 (403)
T PTZ00127 54 TQWVA--PGGEKKVGHWLLGCAGLVGGMVVLGGYTRLTESGLSMTDWKFIGVKPPITQEEWEKEFDKYKQFPEYKQVHYG 131 (403)
T ss_pred ccccc--cccchHHHHHHHHHHHHHHHHHHcchhhcccccccCCCCCCCCCEECCCCHHHHHHHHHHhccCchHhhhcCC
Confidence 33555 5777899999999999999999999999999999999999977889999999999999999999999999999
Q ss_pred CCcccchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 012916 163 MSLEDFKFIYWMEYAHRMWGRGLGIIFALPFSYFLRKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQP 242 (453)
Q Consensus 163 ~~l~~fk~~~~iE~~HRl~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~ 242 (453)
|++|+||.|+|+||+||++|+++|+++++++++++.+++.+++...++.++++++++||++||+||++||++..+++..|
T Consensus 132 ~~l~~fk~i~~~E~~HRllg~~lGl~~l~~l~~~~~~~~~~~~~~~~l~~ll~L~~~Qg~lG~~~V~sgL~~~~~~~~~p 211 (403)
T PTZ00127 132 MTLEEFKKIFFWEWLHRMLGRSIGLFFGLPLLYFAAKGYLKPRMLKRLSAIGGLGGAQGFVGWWMVKSGLDEPLTENKKP 211 (403)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCC
Confidence 99999999999999999999999999988776666666666666677777888899999999999999998877778889
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHhhhccccccCCCC
Q 012916 243 RVSPYRLTAHLTSAFVIYTGLFWTALSVVMPEPPAESVAWVRGAAKVKKLALPVSFIVGITAVSGAFVAGNDAGHAYNTF 322 (453)
Q Consensus 243 ~vsp~~~~~Hl~~a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~w 322 (453)
+|+|+++++|+++|++++++++|+..+...++.+.. .....++++|++++.+++++++||++||+||++|||++||||
T Consensus 212 ~Vs~~rla~Hll~al~i~~~l~~~~~~l~~~~~~~~--~~~~~~~~lr~l~~~~~~l~~lqI~lGa~Vag~~AGlac~~w 289 (403)
T PTZ00127 212 RVSPYRLAAHLFNAFVIYSLLLWNGLTLILFALPSI--APFPELLKMRLLARGLFALVFLTAMSGAFVAGNDAGLAYNTW 289 (403)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 999999999999999999999999987743211110 011225678899999999999999999999999999999999
Q ss_pred CCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 012916 323 PKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGALWWSTRKLDIHPAIRSLIGSTVGMAALQVTLGIS 402 (453)
Q Consensus 323 P~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~~r~~~~~~~r~~a~~ll~Lv~lQi~LGi~ 402 (453)
|+|+|+|+|++++...+.|+|++|+...+|+.||.+|++++++++++.+..+|.+.++..++.+.++++++++|+++|+.
T Consensus 290 P~c~g~~iP~~~~~~~~~~~~~~e~~~~vqf~HR~~A~l~~l~~l~l~~~~~r~~~~~~~~~~~~~ll~lv~lQi~LGi~ 369 (403)
T PTZ00127 290 PKMGGKFVPDDVHNFVPWYKNFFENTAVVQFNHRVLAYLTFLSSLGLYYKARKLNLPKSVRRLLMALLGALTLQVLLGIT 369 (403)
T ss_pred CCCCCCCCCchhhhhhhhHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776668889999999999999999999999999999888887665566788888899999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012916 403 TLLSYVPVSLGTAHQAGALTLLTLMILLNHTTRK 436 (453)
Q Consensus 403 ~v~~~lP~~l~~lH~~~A~lLl~~l~~L~~~~r~ 436 (453)
++++++|++++.+|+++|++++++++++.++.|+
T Consensus 370 tv~~~lP~~la~~H~~gA~lLl~~~~~l~~~~~~ 403 (403)
T PTZ00127 370 TLLSQVPVHLAVAHQFGALVLLTTLLRLCHVLRR 403 (403)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987764
No 3
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=1.3e-58 Score=464.29 Aligned_cols=301 Identities=41% Similarity=0.593 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCC-CCcCCCCChHHHHHHHHhhhcCchhhhcccCCCcccchhhhhhh
Q 012916 97 GIWLFGSAAWVFSMVILGGITRLTRSGLSMTDWKF-TGSLPPLSDEEWLQEFEKYKQSPEYKRVNKGMSLEDFKFIYWME 175 (453)
Q Consensus 97 ~~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~cpdWP~-~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~~~l~~fk~~~~iE 175 (453)
|+|+++++++++++|++||+||.|||||||||||. +|+++|.+++||++||++||++|++ |.++|+|
T Consensus 1 r~~~~~~~~~~~~li~~G~~vr~tgsGl~CpdWP~C~G~~~P~~~~~w~~~~~~y~~~~~~------------~~~~~~E 68 (302)
T PF02628_consen 1 RRLAWLTAVLTFLLIVLGGLVRLTGSGLGCPDWPLCFGQLPPLSESEWAAEFEKYKQTPFF------------KFHTWIE 68 (302)
T ss_pred CcHHHHHHHHHHHHHHHhHheeecccccCCCCCcCccCcCCCCCHHHHHHHHHhCcCCccc------------hhhhhHH
Confidence 57899999999999999999999999999999997 8999999999999999999999953 3448999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTS 255 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~ 255 (453)
|+||++|+++|+++++++++++++++.+++.++.+.++++++++|+++|+++|++++ ++|+++++|+++
T Consensus 69 ~~HR~~~~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-----------~~~~~~~~Hl~~ 137 (302)
T PF02628_consen 69 WGHRLLAGLVGLLILALAVWAWRKRRIRRRLRWLALLALVLVILQGLLGAWTVLSGL-----------VSPYVVTLHLLL 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHH
Confidence 999999999999999999999988788899999999999999999999999999985 169999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccc
Q 012916 256 AFVIYTGLFWTALSVVMPEPPAESVAWVRGAAKVKKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIF 335 (453)
Q Consensus 256 a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f 335 (453)
|+++++++++++.+.+++++ +.+.....++.|++++.+.+++++|+++|++||+++||++|++||+|+.+ +|.
T Consensus 138 a~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~~qi~lGa~va~~~ag~a~~~~P~~~~~-~~~--- 210 (302)
T PF02628_consen 138 ALLIFALLVWLALRARRPEE---SPRRLPRPRRLRWLAWAALVLVFIQIALGALVAGNGAGLACNTWPLMGPD-WPL--- 210 (302)
T ss_pred HHHHHHHHHHHHHHhcCccc---cccccccchhHHHHHHHHHHHHHHHHhccceeccchHHHhccCCcccCCc-chh---
Confidence 99999999999999987532 12233567789999999999999999999999999999999999999943 332
Q ss_pred cchhhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 012916 336 NMKPLIRNFFENTSMVQLDHRILATTTLLSIGALWWSTRKLDIHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGTA 415 (453)
Q Consensus 336 ~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~~r~~~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~l 415 (453)
.++.+.+.+++...+|+.||.+|++++++++++.+.++|++.++..++.+..+++++++|+++|+.++++++|.+++.+
T Consensus 211 -~~~~~~~~~~~~~~v~~~Hr~~A~~~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~ll~~Qv~lGi~~v~~~~p~~l~~~ 289 (302)
T PF02628_consen 211 -CQPDWRNFFDNPGTVQFIHRLLALLVLLLLLALAVRAWRRRRSRALRRLAVLLLALLLLQVLLGILTVLTGLPVWLALL 289 (302)
T ss_pred -ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 2445677788899999999999999999999999998887766888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012916 416 HQAGALTLLTLMI 428 (453)
Q Consensus 416 H~~~A~lLl~~l~ 428 (453)
|+++|++++++++
T Consensus 290 H~~~a~ll~~~lv 302 (302)
T PF02628_consen 290 HQAGAALLLAALV 302 (302)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999998763
No 4
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-47 Score=384.67 Aligned_cols=294 Identities=32% Similarity=0.391 Sum_probs=239.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhcCcccCCCCCCC-CCcCCCCChHHHHHHHHhhhcCchhhhcccCCCcccchhhhhhh
Q 012916 98 IWLFGSAAW-VFSMVILGGITRLTRSGLSMTDWKF-TGSLPPLSDEEWLQEFEKYKQSPEYKRVNKGMSLEDFKFIYWME 175 (453)
Q Consensus 98 ~~~~~~~~l-~~~~I~~Ga~Vr~T~SGL~cpdWP~-~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~~~l~~fk~~~~iE 175 (453)
+....+... .++.|+.|+.||.|+||+||||||. ||++.|. +|+.+++|.+.|+|
T Consensus 22 ~v~~~t~l~~~~l~i~~Ga~v~~t~sglgC~~WP~C~g~~~~~-----------------------~~~~~~~~~~~~iE 78 (323)
T COG1612 22 RVGAATRLTTSGLSIVEGAPVRGTGSGLGCPDWPLCFGQYKPP-----------------------GMTLEVFKLIFWIE 78 (323)
T ss_pred HHHHHHHHHHhhHHHccCcceeeecCCCCCCcchhhcceeecC-----------------------ccCccccchHHHHH
Confidence 333333333 3799999999999999999999997 8988552 23456677779999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTS 255 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~ 255 (453)
|+||++|+++|++++++++++|++++.+++.++.+.++++++++||++||+||.+|+ ++...+.|+..
T Consensus 79 ~~HRl~a~~~gl~vi~l~~~aw~~~~~~r~~~~~~i~~l~l~~lQgliG~~tV~~gl------------~~~~~~~h~~l 146 (323)
T COG1612 79 WFHRLLAGLIGLLVLLLAILAWRRRRISRELKLAAILALALLILQGLIGGWTVTSGL------------LPRIVASHLRL 146 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHHHHHHhCC------------CcchhHHHHHH
Confidence 999999999999999999999998888899999999999999999999999999999 44566667777
Q ss_pred HHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccc
Q 012916 256 AFVIYTGLFWTALSVVMPEPPAESVAWVRGAAKVKKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIF 335 (453)
Q Consensus 256 a~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f 335 (453)
|+.+++.++++.....+++.+. .+.....+++|.++...++.+++|+++|++|+++||+++|++||+|+| ++|.
T Consensus 147 a~~l~aa~~il~~~~~~~~~~~--~~~~~~~~~~r~~a~~~~~~~~~~i~~GalV~~~~a~~a~~~~P~~~~-~~~~--- 220 (323)
T COG1612 147 AMHLFAALVILALLIWTADGPG--SPRLADGKKLRGLAGIGLGLLYLQIYLGALVAGLDAGLAYNTWPLMDG-RWIT--- 220 (323)
T ss_pred HHHHHHHHHHHHHHHhcccccC--ccchhccchhHHHHHHHHHHHHHHHHhhhhhhccccccccCCCCCCcc-cccc---
Confidence 6666666666666655433211 112345678999999999999999999999999999999999999994 4443
Q ss_pred cchhhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 012916 336 NMKPLIRNFFENTSMVQLDHRILATTTLLSIGALWWSTRKL-DIHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGT 414 (453)
Q Consensus 336 ~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~~r~-~~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~ 414 (453)
|..+++.++|+.||..|+.++.+++++.+..+|+ +..+..++....+++++.+|+.+|+.++.+++|.+++.
T Consensus 221 -------~~~~~~~~vq~~Hr~~a~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~l~~lv~~Q~~~Gi~tv~~~vpl~~a~ 293 (323)
T COG1612 221 -------NLGESPETVQFVHRLGAYLVFVAALLLLVAALRRAPLTRAARTRAVVLLALVTLQAALGILTVLLGVPLALAL 293 (323)
T ss_pred -------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 2345678999999999999999998886666654 46677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCch
Q 012916 415 AHQAGALTLLTLMILLNHTTRKPSV 439 (453)
Q Consensus 415 lH~~~A~lLl~~l~~L~~~~r~~~~ 439 (453)
+|++.+.++++...+......+.+.
T Consensus 294 ~H~~~~~~ll~~~~~~a~~~~r~~~ 318 (323)
T COG1612 294 AHQAAALVLLATALLHAWLLARSAY 318 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999888888877777665554443
No 5
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=99.87 E-value=2.1e-21 Score=195.17 Aligned_cols=149 Identities=23% Similarity=0.225 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhh-----ccCchhhhHHHHHHHHHHHH
Q 012916 290 KKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNF-----FENTSMVQLDHRILATTTLL 364 (453)
Q Consensus 290 r~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~-----~~~~~~iq~~HR~~A~~v~l 364 (453)
|++++.++++++++|++|++||.+|||++|+|||.|+|++.|..+.+..+...++ +....++|+.||+.+.++++
T Consensus 1 r~~~~~~~~~~~~li~~G~~vr~tgsGl~CpdWP~C~G~~~P~~~~~w~~~~~~y~~~~~~~~~~~~E~~HR~~~~~~gl 80 (302)
T PF02628_consen 1 RRLAWLTAVLTFLLIVLGGLVRLTGSGLGCPDWPLCFGQLPPLSESEWAAEFEKYKQTPFFKFHTWIEWGHRLLAGLVGL 80 (302)
T ss_pred CcHHHHHHHHHHHHHHHhHheeecccccCCCCCcCccCcCCCCCHHHHHHHHHhCcCCccchhhhhHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999997665432211111111 11357899999999999999
Q ss_pred HHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012916 365 SIGALWWSTRK-LDIHPAIRSLIGSTVGMAALQVTLGISTLLSYV-PVSLGTAHQAGALTLLTLMILLNHTTRKPS 438 (453)
Q Consensus 365 ~~l~l~~~~~r-~~~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~l-P~~l~~lH~~~A~lLl~~l~~L~~~~r~~~ 438 (453)
++++..+..++ ++.++..+..+..+++++++|+.+|..+|.+++ +++..++|+.+|.++++.++++..+.+++.
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~ 156 (302)
T PF02628_consen 81 LILALAVWAWRKRRIRRRLRWLALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRPE 156 (302)
T ss_pred HHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99988887776 456778888899999999999999999999997 999999999999999999999999888874
No 6
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=99.84 E-value=3.5e-20 Score=193.15 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCC-CCcCCCCChHHHHHHHHhhhcCchhhhcccCCCcccchhh
Q 012916 93 QKAVGIWLFGSAAWVFSMVILGGITRLTRSGLSMTDWKF-TGSLPPLSDEEWLQEFEKYKQSPEYKRVNKGMSLEDFKFI 171 (453)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~cpdWP~-~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~~~l~~fk~~ 171 (453)
.+++++++++++++++++|++||+||++|||++|||||. +|++.|.++... .|.|+ +.+++.
T Consensus 253 ~~~lr~l~~~~~~l~~lqI~lGa~Vag~~AGlac~~wP~c~g~~iP~~~~~~---------~~~~~--------~~~e~~ 315 (403)
T PTZ00127 253 LLKMRLLARGLFALVFLTAMSGAFVAGNDAGLAYNTWPKMGGKFVPDDVHNF---------VPWYK--------NFFENT 315 (403)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCchhhhh---------hhhHh--------hhccch
Confidence 456888889999999999999999999999999999998 898877432110 12222 123344
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 012916 172 YWMEYAHRMWGRGLGIIFALPFSYFLRKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTA 251 (453)
Q Consensus 172 ~~iE~~HRl~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~ 251 (453)
.++||.||+.|.+++++++..++..+++ +.++..+..+.++++++++|+++|+.+|.+++ ++.++++
T Consensus 316 ~~vqf~HR~~A~l~~l~~l~l~~~~~r~-~~~~~~~~~~~~ll~lv~lQi~LGi~tv~~~l------------P~~la~~ 382 (403)
T PTZ00127 316 AVVQFNHRVLAYLTFLSSLGLYYKARKL-NLPKSVRRLLMALLGALTLQVLLGITTLLSQV------------PVHLAVA 382 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc------------hHHHHHH
Confidence 7899999999999987776666555443 34455666667788899999999999999998 6779999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 012916 252 HLTSAFVIYTGLFWTALSVV 271 (453)
Q Consensus 252 Hl~~a~~ll~~l~~~~~~~~ 271 (453)
|+++|.+++++++++.++.+
T Consensus 383 H~~gA~lLl~~~~~l~~~~~ 402 (403)
T PTZ00127 383 HQFGALVLLTTLLRLCHVLR 402 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 7
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.8e-17 Score=163.46 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=112.0
Q ss_pred HHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 012916 299 IVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGALWWSTRKLD- 377 (453)
Q Consensus 299 l~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~~r~~- 377 (453)
..++.+..|+.||.+++|++|+|||.|+|++.|... +.+. +....++|+.||+.+.++++.++.+.+.+++++
T Consensus 31 ~~~l~i~~Ga~v~~t~sglgC~~WP~C~g~~~~~~~-~~~~-----~~~~~~iE~~HRl~a~~~gl~vi~l~~~aw~~~~ 104 (323)
T COG1612 31 TSGLSIVEGAPVRGTGSGLGCPDWPLCFGQYKPPGM-TLEV-----FKLIFWIEWFHRLLAGLIGLLVLLLAILAWRRRR 104 (323)
T ss_pred HhhHHHccCcceeeecCCCCCCcchhhcceeecCcc-Cccc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 347999999999999999999999999999998410 0000 112468999999999999888888887777655
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 012916 378 IHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGTAHQAGALTLLTLMILLNHTTRKPS 438 (453)
Q Consensus 378 ~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~lH~~~A~lLl~~l~~L~~~~r~~~ 438 (453)
.++++++.+..+++++++|+++|..+|.++++......|...|+.++++++.+........
T Consensus 105 ~~r~~~~~~i~~l~l~~lQgliG~~tV~~gl~~~~~~~h~~la~~l~aa~~il~~~~~~~~ 165 (323)
T COG1612 105 ISRELKLAAILALALLILQGLIGGWTVTSGLLPRIVASHLRLAMHLFAALVILALLIWTAD 165 (323)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4778999999999999999999999999999999999999999999999888776554433
No 8
>KOG2725 consensus Cytochrome oxidase assembly factor COX15 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.5e-12 Score=126.34 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCC-CCcCCCCChHHHHHHHHhhhcCchhhhcccCCCcccchhhhh
Q 012916 95 AVGIWLFGSAAWVFSMVILGGITRLTRSGLSMTDWKF-TGSLPPLSDEEWLQEFEKYKQSPEYKRVNKGMSLEDFKFIYW 173 (453)
Q Consensus 95 ~~~~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~cpdWP~-~G~l~P~~~~~w~~~f~~y~~~p~~~~~~~~~~l~~fk~~~~ 173 (453)
.+|.....+..++++..+.||+|++.|||+.+++||. ...++|.+ .+--.|-|+ |.|+|+..
T Consensus 260 ~~r~~~~~~~~~v~lTaiSGafVAGlDAG~vYnsfPKMGe~wipd~---------~f~r~piwr--------N~~ENp~t 322 (411)
T KOG2725|consen 260 KLRKLAHGTKGLVFLTAISGAFVAGLDAGLVYNSFPKMGESWIPDD---------MFTRSPIWR--------NFFENPTT 322 (411)
T ss_pred HHHHhhhhhHHHHHHHHHhhhhhhcccccceeccccccccccCccc---------cccccHHHH--------HhhcCCce
Confidence 3778888899999999999999999999999999999 55577732 122334443 34677788
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHH-HhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHH
Q 012916 174 MEYAHRMWGRGLGIIFALPFSYFL-RKGYITLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAH 252 (453)
Q Consensus 174 iE~~HRl~a~~~gl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~H 252 (453)
+|+.||++|......+.. .|+. +|-.+||+.+......++++..|+.||..|...-+ .-..+++|
T Consensus 323 VQ~~HRila~tt~~ai~~--~~~~~rr~~lpkr~k~ai~~~v~~v~~QatLGv~TLl~yV------------Pv~Laa~H 388 (411)
T KOG2725|consen 323 VQFDHRILAITTVTAITA--LYLITRRAPLPKRTKMAINVTVAVVTTQATLGVSTLLYYV------------PVPLAAAH 388 (411)
T ss_pred EEeehhhHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhheeeeeec------------cchhHhhh
Confidence 999999999876544333 3333 34446788887777888999999999999999765 23378999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012916 253 LTSAFVIYTGLFWTALSVV 271 (453)
Q Consensus 253 l~~a~~ll~~l~~~~~~~~ 271 (453)
+.++++++...+|+...++
T Consensus 389 QaGsLalLt~aL~l~~~Lr 407 (411)
T KOG2725|consen 389 QAGSLALLTSALWLAHELR 407 (411)
T ss_pred hcchHHHHHHHHHHHHHhh
Confidence 9999999999999998876
No 9
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=92.70 E-value=9.2 Score=36.21 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCcchhhhhhhhhHH
Q 012916 211 SALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLFW-TALSVVMPEPPAESVAWVRGAAKV 289 (453)
Q Consensus 211 ~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l 289 (453)
.+.+++++.|..+|-+++...-.+ .-.-..-..|...++.++.+++. +..|...+.++..+ +..+-.++.
T Consensus 17 Wl~allv~~~~~~g~~~~~~~~~~--------~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~-~~~~~~~~a 87 (181)
T COG3038 17 WLMALLVIGAFALGELMGFLPRGP--------GLYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVP-GPPPWQRKA 87 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCChHHHHH
Confidence 467788899999999999963210 00123678999999999888764 55666655443211 001122333
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 290 KKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 290 r~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.+++..++-++.+.+-+=++...+.+|... +..+=-.+|... ...+. -.......|-.+|++..++++.-
T Consensus 88 A~~~Hl~LY~l~lalPlsG~l~~~~~g~~~---~~FG~~~~p~~~-~~~~~------~~~~~~~~H~~la~~~~~lv~lH 157 (181)
T COG3038 88 AKLGHLALYLLMLALPLSGYLLSTASGRPI---SVFGLFTVPATL-LPNPA------LADLAKAIHETLAWLLYALIGLH 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---eecchhhccCcc-CCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555566433 222210123221 11111 11234578999999887777765
Q ss_pred HHHHHhc---ccchhHHH
Q 012916 370 WWSTRKL---DIHPAIRS 384 (453)
Q Consensus 370 ~~~~~r~---~~~~~~r~ 384 (453)
+..+.+. +++..+++
T Consensus 158 a~AAl~HH~i~kD~tL~r 175 (181)
T COG3038 158 AAAALKHHFIDKDNTLRR 175 (181)
T ss_pred HHHHHHHHHhccchHHHH
Confidence 5554432 24444554
No 10
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=90.69 E-value=13 Score=33.84 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 290 KKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 290 r~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
|.+=|..++...++++.|-.+...+ + ..+.. ..........|+..+++..+..+.-
T Consensus 9 R~~Hw~~al~~~~l~~tG~~~~~~~-------~------~~~~~-----------~~~~~~~~~~H~~~G~~~~~~~~~~ 64 (188)
T PF00033_consen 9 RLLHWLNALLFILLLITGLYLMFPF-------W------WLAGG-----------FPGRQLLRWLHFSLGIVFLALFLLR 64 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TT-------G------GGGGT-----------TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-------c------cccCC-----------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667778888888998876432 1 01110 0123457889999999987766655
Q ss_pred HHHHHhc-----------------------------ccchhHHHHHHHHHHHHHHHHHHHHHHH---H----------hh
Q 012916 370 WWSTRKL-----------------------------DIHPAIRSLIGSTVGMAALQVTLGISTL---L----------SY 407 (453)
Q Consensus 370 ~~~~~r~-----------------------------~~~~~~r~~a~~ll~Lv~lQi~LGi~~v---~----------~~ 407 (453)
.+..... +.++..+..-..+..++.++++.|.... . .+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~ 144 (188)
T PF00033_consen 65 ILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPG 144 (188)
T ss_dssp HHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHH
T ss_pred HHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChH
Confidence 4443333 0122234444556666889999999981 1 02
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 012916 408 VPVSLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 408 lP~~l~~lH~~~A~lLl~~l~ 428 (453)
...+...+|...+.+++....
T Consensus 145 ~~~~~~~iH~~~~~ll~~~i~ 165 (188)
T PF00033_consen 145 LAEWARLIHFILAYLLLAFII 165 (188)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 235789999998888776654
No 11
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=85.64 E-value=28 Score=31.62 Aligned_cols=57 Identities=12% Similarity=-0.091 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 012916 206 LGLKLSALFALGAGQGLIGWWMVKS--GLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLFWTAL 268 (453)
Q Consensus 206 ~~~~~~~~~~lv~~Q~~LG~~tV~~--~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~~~~~ 268 (453)
.+..=...+++++.|.+.|..+-.. ..... ..........|...+.+++.+.+....
T Consensus 8 ~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~------~~~~~~~~~~H~~~G~~~~~~~~~~~~ 66 (188)
T PF00033_consen 8 TRLLHWLNALLFILLLITGLYLMFPFWWLAGG------FPGRQLLRWLHFSLGIVFLALFLLRIL 66 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGT------TSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccCC------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446677778888888877421 11000 011455788999999988777655443
No 12
>PRK11513 cytochrome b561; Provisional
Probab=85.57 E-value=31 Score=32.17 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHhhCCCCCcchhhhhhhhhHH
Q 012916 211 SALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLF-WTALSVVMPEPPAESVAWVRGAAKV 289 (453)
Q Consensus 211 ~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l 289 (453)
++.+++++.|-+.|.++... +++ ........|...+++++.+++ .+..|...+.++... ....-.+..
T Consensus 14 Wl~a~li~~~~~~~~~~~~~--~~~--------~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~-~~~~~~~~~ 82 (176)
T PRK11513 14 WLVFLLVIVAYCAMEFRGFF--PRS--------DRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVP-KPKPMMTGL 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHccc--chh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCHHHHHH
Confidence 45556677777777665321 110 023456889999999888764 456666544332211 000111222
Q ss_pred HHHH-HHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 290 KKLA-LPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 290 r~la-~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
.+.. +...+++..+-++|-..+.. .|..-.- .|--+|... ..++. .....+..|...++++.++++.
T Consensus 83 A~~~H~~LY~lli~~plsG~~~~~~-~G~~~~~----fg~~lp~~~-~~~~~------~~~~~~~~H~~~a~~l~~li~l 150 (176)
T PRK11513 83 AHLGHLVIYLLFIALPVIGLVMMYN-RGNPWFA----FGLTMPYAS-EANFE------RVDSLKSWHETLANLGYFVIGL 150 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcee----ccccCcccC-CCCHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 34455556666677665542 2321110 111122210 00111 1134677999999887655544
Q ss_pred HH
Q 012916 369 LW 370 (453)
Q Consensus 369 l~ 370 (453)
-+
T Consensus 151 Hv 152 (176)
T PRK11513 151 HA 152 (176)
T ss_pred HH
Confidence 33
No 13
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=84.64 E-value=4.7 Score=34.16 Aligned_cols=56 Identities=14% Similarity=-0.025 Sum_probs=34.9
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHH-HhcccchhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 012916 174 MEYAHRMWGRGLGIIFALPFSYFL-RKGYITLRLGL----KLSALFALGAGQGLIGWWMVK 229 (453)
Q Consensus 174 iE~~HRl~a~~~gl~~l~~~~~~~-~~~~~~~~~~~----~~~~~~~lv~~Q~~LG~~tV~ 229 (453)
+-..|+.++..+..++++..+|-+ .|.+.++.... ...+.+.++..|+.+|+.+|.
T Consensus 39 ~~~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy 99 (104)
T PF09990_consen 39 VAWLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVY 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455899999887776665444422 12222222211 223556788999999999997
No 14
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=83.08 E-value=36 Score=30.90 Aligned_cols=113 Identities=12% Similarity=-0.036 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 290 KKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 290 r~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
|.+=|..++...+++++|-..........- . +...+...|...+++.....++-
T Consensus 7 r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~-----------~---------------~~~~~~~~H~~~G~~~~~~~~~~ 60 (182)
T PF01292_consen 7 RILHWLNALSFIALIATGLWIHFPPPGLYF-----------G---------------DFGGVRNWHVIAGLLLFALLIFR 60 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc-----------c---------------ccchHHhHHHHHHHHHHHHHHHH
Confidence 333466677778888888766533211000 0 00003456999998887666544
Q ss_pred HHHH----------------------Hhcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHh------------hcc
Q 012916 370 WWST----------------------RKLDIH------PAIRSLIGSTVGMAALQVTLGISTLLS------------YVP 409 (453)
Q Consensus 370 ~~~~----------------------~r~~~~------~~~r~~a~~ll~Lv~lQi~LGi~~v~~------------~lP 409 (453)
.+.. .+.+.+ +..+..-....+++.++++.|..+... +..
T Consensus 61 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~ 140 (182)
T PF01292_consen 61 LLWRWRRLFPWSDDVFFQVKNYLYFLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGA 140 (182)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHH
Confidence 4333 222211 122334556777789999999999763 233
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012916 410 VSLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 410 ~~l~~lH~~~A~lLl~~l~ 428 (453)
..+..+|...+.++++...
T Consensus 141 ~~~~~vH~~~a~~~i~~i~ 159 (182)
T PF01292_consen 141 QIARSVHFFLAWLLIAFII 159 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999888887775544
No 15
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=70.78 E-value=70 Score=27.88 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=51.8
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHH-HHhccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcch
Q 012916 173 WMEYAHRMWGRGLGIIFALPFSYF-LRKGYI-----TLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSP 246 (453)
Q Consensus 173 ~iE~~HRl~a~~~gl~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp 246 (453)
+....|+.+-.+..+..++.+... ..+... .....+...+++++..+|.++|.......-.+ .+..|
T Consensus 33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~-------~~~r~ 105 (137)
T PF03188_consen 33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLP-------RKRRP 105 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCc-------ccHHH
Confidence 466789988765444443333222 222211 12344555678888999999999988741100 11245
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012916 247 YRLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 247 ~~~~~Hl~~a~~ll~~l~~~~ 267 (453)
...-.|-..+.+++.+.+...
T Consensus 106 ~~~~~H~~~G~~~~~l~~~~i 126 (137)
T PF03188_consen 106 IWNKWHRWLGYLIYVLAIATI 126 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555569988888777766543
No 16
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=69.83 E-value=86 Score=28.37 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchH--HHHHHHHHHHHHHHHHHHHHHHh--------------
Q 012916 207 GLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPY--RLTAHLTSAFVIYTGLFWTALSV-------------- 270 (453)
Q Consensus 207 ~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~--~~~~Hl~~a~~ll~~l~~~~~~~-------------- 270 (453)
+..=...++++++|.+.|..+......... ... ....|...+++++.+.++.....
T Consensus 7 r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~--------~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (182)
T PF01292_consen 7 RILHWLNALSFIALIATGLWIHFPPPGLYF--------GDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQ 78 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc--------cccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 344456777888899999888665331110 111 26679999998888775544333
Q ss_pred --------hCCCCCcchhhhhhhhhHHHH-HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhh
Q 012916 271 --------VMPEPPAESVAWVRGAAKVKK-LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLI 341 (453)
Q Consensus 271 --------~~~~~~~~~~~~~~~~~~lr~-la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~ 341 (453)
.+...+. ..+.. ..++ .-+...+++.+++++|...-...+ ..+|.. +..
T Consensus 79 ~~~~~~~~~~~~~p~----~~~~~-~~~~~~~~~~~~~~~~~~iTG~~~~~~~~----~~~~~~-----~~~-------- 136 (182)
T PF01292_consen 79 VKNYLYFLLRGKPPP----AGKYN-PGQKIVHWVLYLLLLLLPITGLLLWFASA----EGFPLF-----AAS-------- 136 (182)
T ss_pred HHHHHHHHhcCCCCC----CCcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCccc-----ccc--------
Confidence 1111111 01111 2233 345666777788888887643110 012221 000
Q ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012916 342 RNFFENTSMVQLDHRILATTTLLSIGALWWSTRK 375 (453)
Q Consensus 342 ~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~~r 375 (453)
.+.......+|...+.+....++.-++.+..
T Consensus 137 ---~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a~~ 167 (182)
T PF01292_consen 137 ---PGGAQIARSVHFFLAWLLIAFIILHVYAALF 167 (182)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123457889999999887666655554433
No 17
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=66.94 E-value=74 Score=27.71 Aligned_cols=48 Identities=23% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHH
Q 012916 382 IRSLIGSTVGMAALQVTLGISTLLSY-----VPVSLGTAHQAGALTLLTLMIL 429 (453)
Q Consensus 382 ~r~~a~~ll~Lv~lQi~LGi~~v~~~-----lP~~l~~lH~~~A~lLl~~l~~ 429 (453)
-.+.....+++.++|.+.|....... -+...-..|...+.+.+.+.+.
T Consensus 71 H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~ 123 (129)
T smart00665 71 HSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIV 123 (129)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788899999999987664 2567789999999888776554
No 18
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=59.11 E-value=1.1e+02 Score=29.92 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-------------------CCCCCCCC-CcchHHHHHHHHHHHHHHHHHH
Q 012916 211 SALFALGAGQGLIGWWMVKSGLEE-------------------PPSEYAQP-RVSPYRLTAHLTSAFVIYTGLF 264 (453)
Q Consensus 211 ~~~~~lv~~Q~~LG~~tV~~~L~~-------------------~~~~~~~~-~vsp~~~~~Hl~~a~~ll~~l~ 264 (453)
.+.++++.+|++.|.++-...... .++..+.+ ++ |..-.+|+..++.+++..=
T Consensus 126 ~~~L~lLl~i~~tGl~~~~~~~~~~~~~~~~~~~~w~~sl~~f~p~~~~~~~~v-~~~~~~H~~l~~~ll~~~P 198 (224)
T TIGR00351 126 ILILSLLLIQCLLGLLTIPFSAQHMDGSEMMKLVGWAQSIVTFRGGASQHLDGV-AFIFRLHLVLGMTLFLLFP 198 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcCCCchhhHhhh-hHHHHHHHHHHHHHHHHHH
Confidence 467788889999998875321110 00000011 12 5677889998888887653
No 19
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=58.59 E-value=1.2e+02 Score=26.29 Aligned_cols=87 Identities=13% Similarity=-0.053 Sum_probs=50.1
Q ss_pred hhhhhHhHHHHHHHHHHHHHH-HHHHhccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchH
Q 012916 174 MEYAHRMWGRGLGIIFALPFS-YFLRKGYI-----TLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPY 247 (453)
Q Consensus 174 iE~~HRl~a~~~gl~~l~~~~-~~~~~~~~-----~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~ 247 (453)
+-..|+.+-.+..++.++.+. .+..+++. .....+...+.+++..+|.+.|.......- . ..+-.+.
T Consensus 33 ~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~--~-----~~~~r~~ 105 (129)
T smart00665 33 WFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPG--L-----PSKYRSY 105 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCc--c-----chHHHHH
Confidence 345788776654444333222 22222221 123345556788889999999999754321 0 0111345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012916 248 RLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 248 ~~~~Hl~~a~~ll~~l~~~~ 267 (453)
.-..|-..+.+.+.+.....
T Consensus 106 ~~~~H~~~G~~~~~la~~~~ 125 (129)
T smart00665 106 LNPYHRFVGLAAFILAIVTI 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66799999988887776543
No 20
>cd03494 SQR_TypeC_SdhD Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the high potential quinine, ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. SdhD and SdhC are the two transmembrane proteins of bacterial SQRs. They contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD an
Probab=56.48 E-value=1.2e+02 Score=25.57 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=52.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhccc---------chhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYI---------TLRL-GLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVS 245 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~---------~~~~-~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vs 245 (453)
+.||+.|..+.+........+...... .+.. +....+.+.....-+.+|...|..+.... .
T Consensus 3 ~~qRiSav~L~~l~~~~v~~~~~~~~~~y~~~~~~~~~p~~~i~~~l~~~~~~~H~~~Glr~vi~DYv~~---------~ 73 (99)
T cd03494 3 LVQRVTAVIMALYTIFLVGFLLASPPLTYEAWSGLFSSLWMKIFTLLALLALLLHAWIGLWDILTDYVKP---------A 73 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------H
Confidence 369999988776554333222221111 1112 22234555667789999999999765321 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 012916 246 PYRLTAHLTSAFVIYTGLFWTAL 268 (453)
Q Consensus 246 p~~~~~Hl~~a~~ll~~l~~~~~ 268 (453)
..+.+++.++...+++...|-..
T Consensus 74 ~lr~~l~~~~~~~l~~~~~~~~~ 96 (99)
T cd03494 74 GLRLLLQVLIILVLFGYLIWGIQ 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44889999999999999887543
No 21
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=52.73 E-value=71 Score=30.07 Aligned_cols=48 Identities=15% Similarity=0.002 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 012916 383 RSLIGSTVGMAALQVTLGISTLLSYVPVSLGTAHQAGALTLLTLMILL 430 (453)
Q Consensus 383 r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~lH~~~A~lLl~~l~~L 430 (453)
.+....++.++.+-.+-|...++..-....-.-|...+..+.+++..-
T Consensus 84 ~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s 131 (175)
T PF13301_consen 84 YRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFS 131 (175)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHH
Confidence 344555666667777777777777665566667988888777666543
No 22
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=49.32 E-value=2.3e+02 Score=26.51 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhcch--------------HHHHHHHHHHHHHHHHHH
Q 012916 387 GSTVGMAALQVTLGISTLL-----SYVPV--------------SLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 387 ~~ll~Lv~lQi~LGi~~v~-----~~lP~--------------~l~~lH~~~A~lLl~~l~ 428 (453)
..+.+++++|++.|..+.. .+.|+ .+..+|...+.++++..+
T Consensus 121 ~~l~~~~~~~~lTG~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~iH~~~a~~l~~~i~ 181 (211)
T TIGR02125 121 FGFIVLILFMILTGLALYYYHNGLGGLLPSLFGWVEPLFGGLANVRFIHHLGMWAFVIFVP 181 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3445567889999998875 11111 146789988887766654
No 23
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=48.99 E-value=2e+02 Score=31.00 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=35.7
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHH--Hhcccc----hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 172 YWMEYAHRMWGRGLGIIFALPFSYFL--RKGYIT----LRLGLKLSALFALGAGQGLIGWWMVK 229 (453)
Q Consensus 172 ~~iE~~HRl~a~~~gl~~l~~~~~~~--~~~~~~----~~~~~~~~~~~~lv~~Q~~LG~~tV~ 229 (453)
.|.++.||+.|..+.-.+++..+..+ .|++.+ +..+......++..+.|.+.|-..=.
T Consensus 174 ~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~~g~ 237 (436)
T PF01654_consen 174 FWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGRDREYFRKSLKIGLVIGLIAAILQPFSGDWQGR 237 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 68999999999776554444433333 233322 23333444666777899999976544
No 24
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=46.36 E-value=63 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012916 186 GIIFALPFSYFLRKGYITLRLGLKLSALFALGAGQGLIGWWMVKS 230 (453)
Q Consensus 186 gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~~Q~~LG~~tV~~ 230 (453)
|+++++...|.. .+.+|+++++. ....+.+|.++|..+..+
T Consensus 2 Gi~v~l~ia~l~--S~~rk~I~wr~--V~~gl~lQ~~la~~vl~~ 42 (75)
T PF01773_consen 2 GILVLLAIAWLF--SENRKAIKWRT--VIWGLGLQFVLALFVLKT 42 (75)
T ss_dssp HHHHHHHHHHHH---S-GGG--HHH--HHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHH--HCCCCcCChHH--HHHHHHHHHHHHHHHHhh
Confidence 444443333333 23456677774 456678899999999986
No 25
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=44.98 E-value=2.1e+02 Score=24.83 Aligned_cols=79 Identities=18% Similarity=0.020 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHhcc--c--chhHHHHHHHHHHHHHHHHHHHHHHHHh-hc----chHHHHHHHH
Q 012916 351 VQLDHRILATTTLLSIGALW---WSTRKLD--I--HPAIRSLIGSTVGMAALQVTLGISTLLS-YV----PVSLGTAHQA 418 (453)
Q Consensus 351 iq~~HR~~A~~v~l~~l~l~---~~~~r~~--~--~~~~r~~a~~ll~Lv~lQi~LGi~~v~~-~l----P~~l~~lH~~ 418 (453)
....|..+-.+.++..+.-. +..++.+ . ...-......++++..+|.+.|+..... +. ....-..|..
T Consensus 34 ~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 113 (137)
T PF03188_consen 34 WFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRW 113 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHH
Confidence 45678777665544433332 2222211 1 1123455567778889999999999884 11 2244555999
Q ss_pred HHHHHHHHHHH
Q 012916 419 GALTLLTLMIL 429 (453)
Q Consensus 419 ~A~lLl~~l~~ 429 (453)
.+.+.+.+.+.
T Consensus 114 ~G~~~~~l~~~ 124 (137)
T PF03188_consen 114 LGYLIYVLAIA 124 (137)
T ss_pred HHHHHHHHHHH
Confidence 88877766543
No 26
>COG4244 Predicted membrane protein [Function unknown]
Probab=44.47 E-value=85 Score=29.21 Aligned_cols=52 Identities=27% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHH--HHhcccchhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 012916 178 HRMWGRGLGIIFALPFSYF--LRKGYITLRLGLKLS---ALFALGAGQGLIGWWMVK 229 (453)
Q Consensus 178 HRl~a~~~gl~~l~~~~~~--~~~~~~~~~~~~~~~---~~~~lv~~Q~~LG~~tV~ 229 (453)
|=+.|.++.+++.+.-.|- ++.+...+-....+. +.+.++.+|+.+|+..+.
T Consensus 89 h~~lG~il~~~la~~~~~r~~~~~~~~~~v~~~~L~lsl~~~~Lv~l~g~lG~~l~y 145 (160)
T COG4244 89 HHVLGNILLIVLAILTAWRYVHRNDAVAAVSPAGLLLSLATVLLVALQGYLGAQLVY 145 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhccHHHHHHHHHHHHHHHHHHHHhHHHHH
No 27
>PRK12438 hypothetical protein; Provisional
Probab=44.04 E-value=6.4e+02 Score=30.21 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=12.0
Q ss_pred hhhhhhhhHhHHHHHHHH
Q 012916 171 IYWMEYAHRMWGRGLGII 188 (453)
Q Consensus 171 ~~~iE~~HRl~a~~~gl~ 188 (453)
.+|.++.-|+.-.+++.+
T Consensus 54 Vf~t~l~tr~~Lf~~~~~ 71 (991)
T PRK12438 54 VWITVLLTRLALFAAVAL 71 (991)
T ss_pred ehhHHHHHHHHHHHHHHH
Confidence 368888888766554443
No 28
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=37.75 E-value=2.2e+02 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------------------------hcc-------hHHHHHHHHHHHHHHHH
Q 012916 384 SLIGSTVGMAALQVTLGISTLLS------------------------YVP-------VSLGTAHQAGALTLLTL 426 (453)
Q Consensus 384 ~~a~~ll~Lv~lQi~LGi~~v~~------------------------~lP-------~~l~~lH~~~A~lLl~~ 426 (453)
..-...++++.+|+++|..+-.. ..| +.+-.+|.+.+.++++.
T Consensus 123 ~~D~~~L~lLl~i~~tGl~~~~~~~~~~~~~~~~~~~~w~~sl~~f~p~~~~~~~~v~~~~~~H~~l~~~ll~~ 196 (224)
T TIGR00351 123 GADILILSLLLIQCLLGLLTIPFSAQHMDGSEMMKLVGWAQSIVTFRGGASQHLDGVAFIFRLHLVLGMTLFLL 196 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcCCCchhhHhhhhHHHHHHHHHHHHHHHH
Confidence 34567888899999999987421 011 25667798888888776
No 29
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=37.67 E-value=2.7e+02 Score=24.09 Aligned_cols=79 Identities=22% Similarity=0.033 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--h-ccc----chhHHHHHHHHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHH
Q 012916 351 VQLDHRILATTTLLSIGALWWSTR--K-LDI----HPAIRSLIGSTVGMAALQVTLGISTLLSYV-----PVSLGTAHQA 418 (453)
Q Consensus 351 iq~~HR~~A~~v~l~~l~l~~~~~--r-~~~----~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~l-----P~~l~~lH~~ 418 (453)
....|+.+-.+..+..++-.+... + .+. ...-.+......++.++|.+.|....+... +...-..|..
T Consensus 35 ~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 114 (131)
T cd08554 35 LKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRF 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 456788776655444333322221 1 111 112334556677888999999999976533 4688999999
Q ss_pred HHHHHHHHHHH
Q 012916 419 GALTLLTLMIL 429 (453)
Q Consensus 419 ~A~lLl~~l~~ 429 (453)
.+.+.+.+.+.
T Consensus 115 ~G~~~~~la~~ 125 (131)
T cd08554 115 FGLAIFVLAIA 125 (131)
T ss_pred HHHHHHHHHHH
Confidence 99887776554
No 30
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=36.96 E-value=3.7e+02 Score=25.70 Aligned_cols=120 Identities=9% Similarity=-0.046 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhhhhhhccCc--hhhhHHHHHH
Q 012916 281 AWVRGAAKVKKLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENT--SMVQLDHRIL 358 (453)
Q Consensus 281 ~~~~~~~~lr~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~--~~iq~~HR~~ 358 (453)
+..........+...+.....+|++.|.+.+-.+ .|+.+...+....-..|-+ -.++..|+..
T Consensus 14 ~~p~~~~~~~~~G~ll~~~~~iqiiTGi~La~~Y---------------~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~g 78 (200)
T cd00284 14 PPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHY---------------TPDVTLAFSSVQYIMRDVNFGWLIRSLHANG 78 (200)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------cCChHHHHHHHHHHHccCcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH----HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Q 012916 359 ATTTLLSIGALWWST----RKLDIHPAIRSLIGSTVGMAALQVTLGISTLLSYVPVSLGTA 415 (453)
Q Consensus 359 A~~v~l~~l~l~~~~----~r~~~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~lP~~l~~l 415 (453)
|-..++++..-..+. .-++++.........++.+....+.+|...-+....-|..++
T Consensus 79 as~~~~~~~lH~~r~~~~gsY~~pre~~W~~G~~l~~l~~~~af~GY~Lpw~q~s~w~~~v 139 (200)
T cd00284 79 ASMFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATV 139 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHH
No 31
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=35.90 E-value=7e+02 Score=28.33 Aligned_cols=49 Identities=29% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC--CcchHH--HHHHHHHHHHH
Q 012916 210 LSALFALGAGQGLIGWWMVKSGLEEPPSEYAQP--RVSPYR--LTAHLTSAFVI 259 (453)
Q Consensus 210 ~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~--~vsp~~--~~~Hl~~a~~l 259 (453)
..+++++...|+++|+++-..-++++. -+-.| .+=|+- =+.|.=.+.+=
T Consensus 257 f~~A~~Lf~vQiLlG~~~~hyyVege~-fyGI~l~~~LPfni~R~~H~nlavvW 309 (717)
T COG3256 257 FFLAVALFVVQILLGGLTAHYYVEGEG-FYGIPLAQVLPFNITRTVHTNLAVVW 309 (717)
T ss_pred HHHHHHHHHHHHHHHHHheeeEecccc-ccCcchhhhccHHHHHHHHHhHHHHH
Confidence 347778889999999999887654320 00001 245662 27786655543
No 32
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=35.67 E-value=3.9e+02 Score=25.33 Aligned_cols=93 Identities=19% Similarity=0.151 Sum_probs=52.0
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCCCc--CCCCChHHHHHHHHhhhcCchhhhcccC
Q 012916 85 LVTGGPRAQKAVGIWLFGSAAWVFSMVILGGITRLTRSGLSMTDWKFTGS--LPPLSDEEWLQEFEKYKQSPEYKRVNKG 162 (453)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~cpdWP~~G~--l~P~~~~~w~~~f~~y~~~p~~~~~~~~ 162 (453)
.+.+-++.++...+..=.+.-+.++.+-+=|+...+.+| .+|+.+|. +|+..+. .|+
T Consensus 76 ~~~~~~~~~~~aA~~~Hl~LY~l~lalPlsG~l~~~~~g---~~~~~FG~~~~p~~~~~-----------~~~------- 134 (181)
T COG3038 76 IVPGPPPWQRKAAKLGHLALYLLMLALPLSGYLLSTASG---RPISVFGLFTVPATLLP-----------NPA------- 134 (181)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceecchhhccCccCC-----------CHH-------
Confidence 344334555555555444454555556688899999999 67888774 4433211 111
Q ss_pred CCcccchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhcccchh
Q 012916 163 MSLEDFKFIYWMEYAHRMWGRGLGIIFALPFSYFLRKGYITLR 205 (453)
Q Consensus 163 ~~l~~fk~~~~iE~~HRl~a~~~gl~~l~~~~~~~~~~~~~~~ 205 (453)
.. ...+-.|=.++.+.-+++++-+..+++-...+|+
T Consensus 135 --~~-----~~~~~~H~~la~~~~~lv~lHa~AAl~HH~i~kD 170 (181)
T COG3038 135 --LA-----DLAKAIHETLAWLLYALIGLHAAAALKHHFIDKD 170 (181)
T ss_pred --HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 1244578888887766666665555543333333
No 33
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=34.97 E-value=3.8e+02 Score=25.81 Aligned_cols=78 Identities=17% Similarity=0.043 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhcc---------hHHHHHHHH
Q 012916 353 LDHRILATTTLLSIGALWWSTRKLDIHPAIRSL-----IGSTVGMAALQVTLGISTLLSYVP---------VSLGTAHQA 418 (453)
Q Consensus 353 ~~HR~~A~~v~l~~l~l~~~~~r~~~~~~~r~~-----a~~ll~Lv~lQi~LGi~~v~~~lP---------~~l~~lH~~ 418 (453)
.+|+++-.++++-.+.+.+.+.|-+....+--. -...+.+.+..+.-|+-.+..+.+ -.++..|.+
T Consensus 60 ~v~~~Lh~v~~lglig~~iKl~kp~e~~~lFdg~SL~Ly~~~i~vYltni~~gi~~~~~~~~~~v~r~~~l~VlAASn~I 139 (196)
T PF08229_consen 60 IVKYILHIVIGLGLIGLLIKLYKPSESNKLFDGASLVLYVFGICVYLTNIVPGIRSVSSGNWGEVDREDGLRVLAASNTI 139 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHhhcccchhHHHHHHHHHHHhHhhHhHHHhcCCCCcccccHHHHHHHHHHhhHH
Confidence 467777777777777777777664432221111 112233445666677777665432 157899999
Q ss_pred HHHHHHHHHHHH
Q 012916 419 GALTLLTLMILL 430 (453)
Q Consensus 419 ~A~lLl~~l~~L 430 (453)
.+++|.++++.-
T Consensus 140 i~~~LvGVLvLQ 151 (196)
T PF08229_consen 140 IALVLVGVLVLQ 151 (196)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 34
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=34.25 E-value=3.5e+02 Score=24.30 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012916 247 YRLTAHLTSAFVIYTGLFWTALSVVM 272 (453)
Q Consensus 247 ~~~~~Hl~~a~~ll~~l~~~~~~~~~ 272 (453)
.++..|...|.+.+-+..++..+..+
T Consensus 76 ~iL~~Hi~LA~~~~pL~l~tl~~a~~ 101 (133)
T PF04238_consen 76 FILISHIILAIVALPLVLYTLYRALR 101 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988888877766543
No 35
>MTH00100 CYTB cytochrome b; Provisional
Probab=34.21 E-value=4.2e+02 Score=27.99 Aligned_cols=96 Identities=8% Similarity=-0.013 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.-.+.+...+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-..++++..-
T Consensus 34 G~ll~~~~~~qiiTG~~L~~~Y~---------------p~~~~a~~Sv~~i~~~-v~~G~~iR~~H~~gas~~~~~~~~H 97 (379)
T MTH00100 34 GSLLGICLILQILTGLFLAMHYT---------------SDTTTAFSSVAHICRD-VNYGWIIRYLHANGASMFFICLFLH 97 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------------CChhhHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677889999999876432 2221111110 011 0123468999999998887776655
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
..+..-.+ +.++.......++.+....+.+|...-
T Consensus 98 ~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~Lp 134 (379)
T MTH00100 98 VGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134 (379)
T ss_pred HHHHHHhccccCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 54432111 122333333344455567777776544
No 36
>MTH00145 CYTB cytochrome b; Provisional
Probab=33.84 E-value=4.2e+02 Score=27.98 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
...+.....+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-..++++..-
T Consensus 35 G~ll~~~~~~qiitG~~L~~~Y~---------------p~~~~Af~Sv~~i~~~-v~~Gw~iR~~H~~gas~~f~~~~lH 98 (379)
T MTH00145 35 GSLLGLCLGIQILTGLFLSMHYT---------------AHVDLAFSSVIHIMRD-VNYGWLLRSLHANGASFFFICIYLH 98 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------------CCCchhHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999876432 2211111110 011 0123468999999998877766655
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
..+..-.+ +.+........++.+....+.+|...-
T Consensus 99 ~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GYvLp 135 (379)
T MTH00145 99 IGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135 (379)
T ss_pred HHHHHHcccccCchHHHHhHHHHHHHHHHHHHhhccC
Confidence 44432111 122333333344555677788887654
No 37
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=33.49 E-value=3.2e+02 Score=23.65 Aligned_cols=88 Identities=13% Similarity=-0.157 Sum_probs=52.8
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHhc-cc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcch
Q 012916 173 WMEYAHRMWGRGLGIIFALPFSYFLRKG-YI-----TLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSP 246 (453)
Q Consensus 173 ~iE~~HRl~a~~~gl~~l~~~~~~~~~~-~~-----~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp 246 (453)
.....|+.+-.+..++.++-+......+ .. .....+...+.+++..+|.++|........ ... .-++
T Consensus 34 ~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~--~~~-----~~r~ 106 (131)
T cd08554 34 ALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPL--LRL-----SYRS 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccc-----hHHH
Confidence 3556899887765554443332222222 11 123345556778889999999998865422 100 0135
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012916 247 YRLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 247 ~~~~~Hl~~a~~ll~~l~~~~ 267 (453)
..--.|-..+.+.+.+...+.
T Consensus 107 ~~~~~H~~~G~~~~~la~~t~ 127 (131)
T cd08554 107 SLLPFHRFFGLAIFVLAIATI 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677899999888887776544
No 38
>MTH00191 CYTB cytochrome b; Provisional
Probab=33.39 E-value=3.5e+02 Score=28.33 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh---hhhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP---LIRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p---~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.-.+.+...+|++.|.+.+-.+ .|+.+...+. ..++ ....-.++.+|+..|-..++++..-
T Consensus 31 G~l~~~~~~~q~itG~~L~~~Y---------------~p~~~~a~~Sv~~i~~~-v~~G~~~R~~H~~gas~~~~~~~~H 94 (365)
T MTH00191 31 GSLLGLCLIIQILTGLFLAMHY---------------TADISLAFSSVVHICRD-VNYGWLLRNIHANGASFFFICIYLH 94 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh---------------cCCchHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788999999887543 1221111111 0011 1123468899999998877766655
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
..+..-.+ +.++.......++.++..++.+|...-
T Consensus 95 ~~r~~~~gsy~~~~~W~~G~~l~~l~~~~~f~Gy~Lp 131 (365)
T MTH00191 95 IGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131 (365)
T ss_pred HHHHHHhheeccchhhHhhHHHHHHHHHHHHhhcccc
Confidence 44432111 122333333445555677777876654
No 39
>MTH00034 CYTB cytochrome b; Validated
Probab=33.30 E-value=4e+02 Score=28.11 Aligned_cols=95 Identities=11% Similarity=0.027 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.-.+.....+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-...+++..-
T Consensus 34 G~ll~~~~~~qiiTG~~L~~~Y~---------------p~~~~A~~Sv~~i~~~-v~~Gw~iR~~H~~gas~~f~~~~lH 97 (379)
T MTH00034 34 GSLLGLCLIIQIITGIFLAMHYT---------------ADISLAFSSVSHICRD-VNYGWLLRNIHANGASLFFICLYFH 97 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------------CCccchHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677889999999876442 2211111110 011 1123468999999998877766655
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGIST 403 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~ 403 (453)
..+..-.+ +.++.......++.+....+.+|...
T Consensus 98 ~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~L 133 (379)
T MTH00034 98 IGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVL 133 (379)
T ss_pred HHHHHHhhccCCchHHHHhHHHHHHHHHHHHhhcCc
Confidence 44432111 12223222334444455666666554
No 40
>MTH00016 CYTB cytochrome b; Validated
Probab=32.70 E-value=5.2e+02 Score=27.30 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHHH
Q 012916 294 LPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGALW 370 (453)
Q Consensus 294 ~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~ 370 (453)
-.+.+...+|++.|-+.+-.+. |+.+...+.. .++. ...-.++..|+..|-..++++..-.
T Consensus 36 sll~~~~~~qiitG~~L~~~Y~---------------p~~~~Af~Sv~~i~~~v-~~Gw~iR~~H~~gas~~f~~~ylHi 99 (378)
T MTH00016 36 SLLGLCLVIQILTGLFLSMHYT---------------PHIDLAFSSVAHISRDV-NYGWLLRNLHANGASFFFICLYLHI 99 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc---------------CCcchhHHHHHHHHccC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999998875432 2211111110 1110 1234689999999988777766555
Q ss_pred HHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 371 WSTRKLD--IHPAIRSLIGSTVGMAALQVTLGIST 403 (453)
Q Consensus 371 ~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~ 403 (453)
.+..-.+ +.++.......++.++...+.+|...
T Consensus 100 ~R~~~~gsy~~~~~W~~Gv~l~~l~m~~af~GYvL 134 (378)
T MTH00016 100 GRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVL 134 (378)
T ss_pred HHHHhccccccchHHHhhHHHHHHHHHHHHhhhcc
Confidence 4432111 12233333344555566777777544
No 41
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=32.36 E-value=4.1e+02 Score=24.57 Aligned_cols=48 Identities=21% Similarity=0.078 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hcchHHHHHHHHHHHHHHHHHHHH
Q 012916 383 RSLIGSTVGMAALQVTLGISTLLS-------YVPVSLGTAHQAGALTLLTLMILL 430 (453)
Q Consensus 383 r~~a~~ll~Lv~lQi~LGi~~v~~-------~lP~~l~~lH~~~A~lLl~~l~~L 430 (453)
.+.....+++.++|.+.|....+. .-+..+-..|...+.+.+.....-
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t 150 (183)
T cd08761 96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLAT 150 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777889999999988764 356778899999988877665543
No 42
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=31.92 E-value=4e+02 Score=28.96 Aligned_cols=59 Identities=14% Similarity=-0.034 Sum_probs=29.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHhccc----chhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012916 174 MEYAHRMWGRGLGIIFALPFSYFLRKGYI----TLRLGLKLSALFALGAGQGLIGWWMVKSGL 232 (453)
Q Consensus 174 iE~~HRl~a~~~gl~~l~~~~~~~~~~~~----~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L 232 (453)
.=|.=|++.++.++++++.++.+|..++. +|...+.......+-.+-...||++=+.|-
T Consensus 325 ~f~sfriMvg~g~~~~~l~~~~~~~~~r~~~~~~k~~l~~~i~~~pl~~ia~~~GW~vtEvGR 387 (457)
T COG1271 325 VFWSFRIMVGLGFLMILLALLALWLTLRGRIDQSKWLLKALILAIPLPWIAIEAGWIVTEVGR 387 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHhHHHHHHHHhhHHHHhhcC
Confidence 45677888777766665444333332222 233333333333344445556666666664
No 43
>MTH00086 CYTB cytochrome b; Provisional
Probab=31.89 E-value=4.6e+02 Score=27.49 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.-.+.+...+|++.|.+.+-.+. |+.+...+.. .++. ...-.++..|+..|-..++++..-
T Consensus 23 Gsll~~~l~iQiiTGi~L~~~Y~---------------p~~~~Af~Sv~~I~~~v-~~GwliR~~H~~gas~~f~~~ylH 86 (355)
T MTH00086 23 GSMLGMVLVFQILTGTFLAFYYT---------------ADSSMAFSSVQYIMYEV-NFGWLFRIFHFNGASLFFIFLYLH 86 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc---------------CCchhHHHHHHHHhCcc-cccHHHHHHHHhHHHHHHHHHHHH
Confidence 34455678889999999875432 2221111110 1111 123468999999998877766655
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGIST 403 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~ 403 (453)
..+..-.+ +.+........++.++...+.+|...
T Consensus 87 i~R~~~ygsy~~~~~W~~Gv~l~~l~m~~af~GYvL 122 (355)
T MTH00086 87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVL 122 (355)
T ss_pred HHHHHHHcccCCchHHHHhHHHHHHHHHHHHhhhhc
Confidence 44432111 12222222333444455666666544
No 44
>MTH00119 CYTB cytochrome b; Provisional
Probab=31.46 E-value=4.4e+02 Score=27.79 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh---hhhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP---LIRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p---~~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+...+.....+|++.|.+.+-.+. |+.+...+. ..++ ....-.++..|+..|-...+++..
T Consensus 34 ~G~ll~~~~~~qiitG~~L~~~Y~---------------p~~~~a~~Sv~~i~~~-v~~G~~iR~~H~~ga~~~~~~~~l 97 (380)
T MTH00119 34 FGSLLGLCLITQILTGLFLAMHYT---------------ADISLAFSSVAHICRD-VQYGWLIRNLHANGASMFFICIYL 97 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHH
Confidence 334455677889999998875432 222111111 0111 112346899999999888777665
Q ss_pred HHHHHHhcc-cchhHHHHH-HHHHHHHHHHHHHHHHH
Q 012916 369 LWWSTRKLD-IHPAIRSLI-GSTVGMAALQVTLGIST 403 (453)
Q Consensus 369 l~~~~~r~~-~~~~~r~~a-~~ll~Lv~lQi~LGi~~ 403 (453)
-..+..-.. .++...+.. ..++.+....+.+|...
T Consensus 98 H~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~~f~Gy~L 134 (380)
T MTH00119 98 HIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVL 134 (380)
T ss_pred HHHHHHHhceecccchhhhhhHHHHHHHHHHHHhccc
Confidence 554442111 111222333 33444455566666544
No 45
>PRK00068 hypothetical protein; Validated
Probab=30.95 E-value=9.9e+02 Score=28.61 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=11.3
Q ss_pred hhhhhhhHhHHHHHHHH
Q 012916 172 YWMEYAHRMWGRGLGII 188 (453)
Q Consensus 172 ~~iE~~HRl~a~~~gl~ 188 (453)
+|.++..|+.-.+++.+
T Consensus 53 f~t~l~t~~~Lf~~~~~ 69 (970)
T PRK00068 53 FFTKLVTRIVLFIPVGL 69 (970)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 67888888666554433
No 46
>PLN02680 carbon-monoxide oxygenase
Probab=30.36 E-value=5.4e+02 Score=25.39 Aligned_cols=80 Identities=18% Similarity=-0.057 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHHHHHHHHHHHHHHHh-hcc----hHHHHHHHHHH
Q 012916 350 MVQLDHRILATTTLLSIGALWWSTRKLDIHPA----IRSLIGSTVGMAALQVTLGISTLLS-YVP----VSLGTAHQAGA 420 (453)
Q Consensus 350 ~iq~~HR~~A~~v~l~~l~l~~~~~r~~~~~~----~r~~a~~ll~Lv~lQi~LGi~~v~~-~lP----~~l~~lH~~~A 420 (453)
.+++..-..|.+..+.-++.++.....+..+. --+.....+.+..+|.+.|..+.+. +.+ ..+-..|...+
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 35555555565555444444444433222122 2355566778889999999999664 222 34557899988
Q ss_pred HHHHHHHHH
Q 012916 421 LTLLTLMIL 429 (453)
Q Consensus 421 ~lLl~~l~~ 429 (453)
...+.+.+.
T Consensus 161 ~~if~Laia 169 (232)
T PLN02680 161 IYIYALAVA 169 (232)
T ss_pred HHHHHHHHH
Confidence 887766543
No 47
>MTH00131 CYTB cytochrome b; Provisional
Probab=29.99 E-value=4e+02 Score=28.14 Aligned_cols=97 Identities=9% Similarity=-0.015 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+...+.+...+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-..++++..
T Consensus 33 ~G~ll~~~~~~qiitG~~L~~~Y~---------------p~~~~a~~Sv~~i~~e-v~~G~~iR~~H~~gas~~~~~~~l 96 (380)
T MTH00131 33 FGSLLGLCLITQILTGLFLAMHYT---------------SDISTAFSSVAHICRD-VNYGWLIRNLHANGASFFFICIYL 96 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------CCchhHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 334556778899999998875432 2211111110 011 012346899999999887766655
Q ss_pred HHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 369 LWWSTRKL--DIHPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 369 l~~~~~r~--~~~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
-..+..-. .+.++.......++.+....+.+|...-
T Consensus 97 H~~r~~~~gsy~~~~~W~~G~~l~~l~~~~~f~Gy~Lp 134 (380)
T MTH00131 97 HIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134 (380)
T ss_pred HHHHHHHHHHHhCchHHHHhHHHHHHHHHHHHHhccCc
Confidence 44433111 1122333333344455566677776543
No 48
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=29.75 E-value=3.4e+02 Score=22.81 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=47.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhccc---------chhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYI---------TLRL-GLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVS 245 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~---------~~~~-~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vs 245 (453)
+.||+.|..+..+....+......... .+.. +....+.+..+..-+..|.-.+..+.... .
T Consensus 9 ~~~RiSgv~L~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~~~l~~~~~~~H~~~Glr~ii~Dy~~~---------~ 79 (105)
T TIGR02968 9 LLQRVTAVVLALYTIFLIGFLLALPGLTYEAWRALFAHPWMKIFTLLALLALLYHAWIGMRVVLEDYVKP---------E 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhHHHHHHHHccc---------h
Confidence 489999988755443322222111110 1111 22233556667789999999988754221 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012916 246 PYRLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 246 p~~~~~Hl~~a~~ll~~l~~~~ 267 (453)
..+..+..++-++.++..++..
T Consensus 80 ~~r~~l~~~~~~~~~~~~~~~~ 101 (105)
T TIGR02968 80 GLRLVLQVLIILFLVAYLIWGA 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777776666665543
No 49
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=29.61 E-value=3.9e+02 Score=25.68 Aligned_cols=85 Identities=15% Similarity=-0.030 Sum_probs=47.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhcccch------hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchH--
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYITL------RLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPY-- 247 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~~~------~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~-- 247 (453)
..||++..++++-++..++-.. |..... .+.. .....++-+....-|.-++..+..+. .++....
T Consensus 60 ~v~~~Lh~v~~lglig~~iKl~-kp~e~~~lFdg~SL~L-y~~~i~vYltni~~gi~~~~~~~~~~-----v~r~~~l~V 132 (196)
T PF08229_consen 60 IVKYILHIVIGLGLIGLLIKLY-KPSESNKLFDGASLVL-YVFGICVYLTNIVPGIRSVSSGNWGE-----VDREDGLRV 132 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcHHhhcccchhHHH-HHHHHHHHhHhhHhHHHhcCCCCccc-----ccHHHHHHH
Confidence 4788888777766555554322 221111 1111 11222333566677777777654321 1222223
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012916 248 RLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 248 ~~~~Hl~~a~~ll~~l~~~~ 267 (453)
+.+.|.++++++.+.++..+
T Consensus 133 lAASn~Ii~~~LvGVLvLQa 152 (196)
T PF08229_consen 133 LAASNTIIALVLVGVLVLQA 152 (196)
T ss_pred HHHhhHHHHHHHHHHHHHHh
Confidence 67889999999999998765
No 50
>PLN02351 cytochromes b561 family protein
Probab=29.59 E-value=5.7e+02 Score=25.42 Aligned_cols=46 Identities=13% Similarity=-0.040 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHH
Q 012916 384 SLIGSTVGMAALQVTLGISTLLSY-----VPVSLGTAHQAGALTLLTLMIL 429 (453)
Q Consensus 384 ~~a~~ll~Lv~lQi~LGi~~v~~~-----lP~~l~~lH~~~A~lLl~~l~~ 429 (453)
+.....+.+..+|.+.|....+.- ....+-..|...+.+.+...+.
T Consensus 122 WlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~Laia 172 (242)
T PLN02351 122 WMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVA 172 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHH
Confidence 445567777889999999997652 2235667999998887776554
No 51
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=29.14 E-value=1e+02 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=18.0
Q ss_pred CCcccchhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 012916 163 MSLEDFKFIYWMEYAHRMWGRGLGIIFALPFSYFL 197 (453)
Q Consensus 163 ~~l~~fk~~~~iE~~HRl~a~~~gl~~l~~~~~~~ 197 (453)
|++.++. +-|.|-+.|-++.-++....+-++
T Consensus 1 MTLaqlg----~~~WhDLAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 1 MTLAQLG----IAFWHDLAAPIIAGIIASLIVGWL 31 (35)
T ss_pred CcHHHHH----HHHHHHhHhHHHHHHHHHHHHHHH
Confidence 4555553 677888888766544443444334
No 52
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.88 E-value=4.8e+02 Score=24.53 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHH------hcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHH
Q 012916 353 LDHRILATTTLLSIGA-LWWSTR------KLD-IHPAIRSLIGSTVGMAALQVTLGISTLLSY--VPVSLGTAHQ 417 (453)
Q Consensus 353 ~~HR~~A~~v~l~~l~-l~~~~~------r~~-~~~~~r~~a~~ll~Lv~lQi~LGi~~v~~~--lP~~l~~lH~ 417 (453)
-.|-+.+.++..+++. +.|.+. |.+ .+|.......++....++-+.-|+.++.+. .|..+..+|.
T Consensus 74 p~~iilglivvvlvi~~liwa~~~~a~~krmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHA 148 (188)
T KOG4050|consen 74 PQDIILGLIVVVLVIGTLIWAASADANIKRMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHA 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666665555554 344432 211 233333333344444455555555555543 3555555553
No 53
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=27.61 E-value=3.2e+02 Score=26.42 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcccchhhhHHH----HHHHHHHHHHHHHHHHHHHh
Q 012916 179 RMWGRGLGIIFALPFSYFLRKGYITLRLGLKL----SALFALGAGQGLIGWWMVKS 230 (453)
Q Consensus 179 Rl~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~----~~~~~lv~~Q~~LG~~tV~~ 230 (453)
-..|.+.|++.++.+.....||-.+++.+... ...++++++|.+.|-.+-..
T Consensus 89 ~~~g~~~G~l~lvGl~~Ll~RR~~~~~vr~~s~~~D~~~L~lLl~i~~tG~~~~~~ 144 (222)
T PF02665_consen 89 EVLGDIAGLLALVGLLILLVRRLFDPRVRAISTPSDYFVLLLLLAIVLTGLLMEGV 144 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH--HHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556554433322232333344443322 25667777888888665544
No 54
>MTH00224 CYTB cytochrome b; Provisional
Probab=27.60 E-value=3.4e+02 Score=28.74 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHHH
Q 012916 294 LPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGALW 370 (453)
Q Consensus 294 ~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~ 370 (453)
-.+.....+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-...+++..-.
T Consensus 36 sll~~~~~~qiiTGi~L~~~Y~---------------p~~~~Af~Sv~~i~~e-v~~Gw~iR~~H~~gas~~f~~~~lH~ 99 (379)
T MTH00224 36 SLLGLCLVIQVLTGLFLSMHYA---------------PNIEMAFSSVAHISRD-VNYGWLLRSIHANGASMFFLFIYLHV 99 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---------------CCchHHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999998875432 2221111110 011 11234689999999998777665554
Q ss_pred HHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHH
Q 012916 371 WSTRKLD--IHPAIRSLIGSTVGMAALQVTLGIS 402 (453)
Q Consensus 371 ~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~ 402 (453)
.+..-.+ +.++.......++.++...+.+|..
T Consensus 100 ~R~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GY~ 133 (379)
T MTH00224 100 GRGLYYGSFNLSETWNIGVILFILTMATAFLGYV 133 (379)
T ss_pred HHHHHHccccCHHHHHHhHHHHHHHHHHHHeEee
Confidence 4432111 1223322223344445555666644
No 55
>PRK03735 cytochrome b6; Provisional
Probab=27.55 E-value=2.6e+02 Score=27.38 Aligned_cols=110 Identities=12% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh--hhhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 291 KLALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP--LIRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 291 ~la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p--~~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
.+...+.....+|++.|.+.+-.+ .|+.+...+. .+.+-....-.++.+|+..|-...+++..
T Consensus 43 ~~G~l~~~~~~iqi~TGi~L~~~Y---------------~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~l 107 (223)
T PRK03735 43 CFGGLTFFCFVIQILSGMFLTMYY---------------VPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFL 107 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------CCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHH
Q ss_pred HHHHH---HhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHH
Q 012916 369 LWWST---RKLDIHPAIRSLIGSTVGMA-ALQVTLGISTLLSYVPVSLGTA 415 (453)
Q Consensus 369 l~~~~---~r~~~~~~~r~~a~~ll~Lv-~lQi~LGi~~v~~~lP~~l~~l 415 (453)
-..+. ...+.+|...+.....+.++ .....+|...-+-...-|.+++
T Consensus 108 H~~r~~~~gsYk~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~wa~~V 158 (223)
T PRK03735 108 HTLRVFFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKV 158 (223)
T ss_pred HHHHHHHHHHHcCCCCceeHHHHHHHHHHHHHHhccccCCcccchhhHHHH
No 56
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=27.45 E-value=3.7e+02 Score=22.45 Aligned_cols=56 Identities=23% Similarity=0.007 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-H--Hhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012916 351 VQLDHRILATTTLLSIGALWWS-T--RKLDIH---PAIRSLIGSTVGMAALQVTLGISTLLS 406 (453)
Q Consensus 351 iq~~HR~~A~~v~l~~l~l~~~-~--~r~~~~---~~~r~~a~~ll~Lv~lQi~LGi~~v~~ 406 (453)
+-..|...+..+..+.+.+.++ . |+++.+ +..-..+.+.+.++..|.-+|.-+|+-
T Consensus 39 ~~~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy~ 100 (104)
T PF09990_consen 39 VAWLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVYR 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5678999988877666654322 2 222222 122223445566778999999888763
No 57
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.32 E-value=4.7e+02 Score=23.69 Aligned_cols=47 Identities=17% Similarity=-0.065 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcc----hHHHHHHHHHHHHHHHHHHH
Q 012916 383 RSLIGSTVGMAALQVTLGISTLLS-YVP----VSLGTAHQAGALTLLTLMIL 429 (453)
Q Consensus 383 r~~a~~ll~Lv~lQi~LGi~~v~~-~lP----~~l~~lH~~~A~lLl~~l~~ 429 (453)
-+.....+.+..+|.+.|..+++. +.+ ..+-..|...+...+.+.+.
T Consensus 79 swlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~ 130 (143)
T cd08763 79 SWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVG 130 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344556777888999999988653 333 45667899988887776554
No 58
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=26.95 E-value=5e+02 Score=23.89 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hc----chHHHHHHHHHHHHHHHHHHHH
Q 012916 383 RSLIGSTVGMAALQVTLGISTLLS-YV----PVSLGTAHQAGALTLLTLMILL 430 (453)
Q Consensus 383 r~~a~~ll~Lv~lQi~LGi~~v~~-~l----P~~l~~lH~~~A~lLl~~l~~L 430 (453)
-+.....+.+..+|.+.|..+.+. +. ...+-..|...+.+++.+.+.-
T Consensus 86 SwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t 138 (153)
T cd08765 86 SWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIAT 138 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889999999999854 22 3467788999988877765543
No 59
>CHL00070 petB cytochrome b6
Probab=25.96 E-value=6.2e+02 Score=24.60 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHH--HHHHhcccchhhhHHH-HHHHHHHHHHHHHHHHH
Q 012916 172 YWMEYAHRMWGRGLGIIFALPFS--YFLRKGYITLRLGLKL-SALFALGAGQGLIGWWM 227 (453)
Q Consensus 172 ~~iE~~HRl~a~~~gl~~l~~~~--~~~~~~~~~~~~~~~~-~~~~~lv~~Q~~LG~~t 227 (453)
..+...|+..|-+.-+++.+-.. .+....+.+|+..|.. ..+++++...+.+|=..
T Consensus 80 wl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~pre~~W~~Gv~l~~l~m~~af~GY~L 138 (215)
T CHL00070 80 WLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTVSFGVTGYSL 138 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCcHHHHHHHHHHHHHHHccccC
Confidence 56999999999876665544332 2222334456655644 45666777888888543
No 60
>MTH00074 CYTB cytochrome b; Provisional
Probab=25.77 E-value=5.3e+02 Score=27.21 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh---hhhhhccCchhhhHHHHHHHHHHHHHHHHH
Q 012916 293 ALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP---LIRNFFENTSMVQLDHRILATTTLLSIGAL 369 (453)
Q Consensus 293 a~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p---~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l 369 (453)
.-.+.+...+|++.|.+.+-.+. |+.+...+. ..++. ...-.++..|+..|-..++++..-
T Consensus 35 G~ll~~~~~~qiitG~~L~~~Y~---------------p~~~~a~~Sv~~i~~~v-~~Gw~~R~~H~~gas~~f~~~~lH 98 (380)
T MTH00074 35 GSLLGVCLIAQIITGLFLAMHYT---------------ADTSSAFSSVAHICRDV-NYGWLMRNIHANGASFFFICIYLH 98 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---------------CChhhHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778899999998875432 222111111 11111 123468999999998877666554
Q ss_pred HHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 370 WWSTRKLD--IHPAIRSLIGSTVGMAALQVTLGIST 403 (453)
Q Consensus 370 ~~~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~ 403 (453)
..+..-.+ +.++.......++.+....+.+|...
T Consensus 99 ~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~L 134 (380)
T MTH00074 99 IGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVL 134 (380)
T ss_pred HHHHHHHHHhcCchHHHhhHHHHHHHHHHHHHhccc
Confidence 43331111 12223332334444555666666544
No 61
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.85 E-value=5.6e+02 Score=23.71 Aligned_cols=53 Identities=13% Similarity=-0.091 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 012916 205 RLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLFWTA 267 (453)
Q Consensus 205 ~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~~~~ 267 (453)
...+...+++++.++|.++|...=.. .+. -.++.--.|-.++.+.+.+.....
T Consensus 104 ~H~~lGl~~~~l~~lQ~~~G~~~~~~------~~~----~R~~~~~~H~~~G~~~~~l~~v~i 156 (191)
T cd08760 104 AHAILGIIVLALAILQPLLGLLRPHP------GSK----KRSIWNWAHRWLGRAALILAIVNI 156 (191)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcCCC------CCC----cccchHHHHHHHHHHHHHHHHHHH
Confidence 34555667888999999999853211 110 123445677777776666655443
No 62
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=24.62 E-value=6.7e+02 Score=24.52 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012916 413 GTAHQAGALTLLTLMIL 429 (453)
Q Consensus 413 ~~lH~~~A~lLl~~l~~ 429 (453)
+.=|.+.|........+
T Consensus 217 ~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 217 AWWHILTGIGAYLLIVF 233 (262)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44577777765555543
No 63
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=24.13 E-value=6.3e+02 Score=24.01 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHh--------------------------cccchhhhHHHHHHHHHHHHHHHHHHH
Q 012916 173 WMEYAHRMWGRGLGIIFALPFSYFLRK--------------------------GYITLRLGLKLSALFALGAGQGLIGWW 226 (453)
Q Consensus 173 ~iE~~HRl~a~~~gl~~l~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~lv~~Q~~LG~~ 226 (453)
...+.||+.|.+..+.+++-+.+.++. ++.+..-+....++.++++++.+.|..
T Consensus 52 ~~r~iH~~~g~i~~~~~~~~~~~~~~~~~~~~~d~~w~~~~~~~~~~~~~p~~~kyN~~qk~~y~~~~~~~~~~~iTGl~ 131 (211)
T PRK10639 52 LARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVI 131 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H----HHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 012916 227 M----VKSGLEEPPSEYAQPRVSPYRLTAHLTSAFVIYTGLFWTALSV 270 (453)
Q Consensus 227 t----V~~~L~~~~~~~~~~~vsp~~~~~Hl~~a~~ll~~l~~~~~~~ 270 (453)
+ ....+ ...+.+....+|...+.++++.++...+..
T Consensus 132 l~~p~~~~~~--------~~~~~~~~~~~H~~~a~~~i~~iivHiy~a 171 (211)
T PRK10639 132 IWRPYFAPAF--------SIPVIRFALMLHSFAAVALIVVIMVHIYAA 171 (211)
T ss_pred HHHHhhcccC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 64
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.03 E-value=6.2e+02 Score=23.98 Aligned_cols=82 Identities=12% Similarity=-0.092 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccchh---hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 012916 180 MWGRGLGIIFALPFSYFLRKGYITLR---LGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYRLTAHLTSA 256 (453)
Q Consensus 180 l~a~~~gl~~l~~~~~~~~~~~~~~~---~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~~~~Hl~~a 256 (453)
.+|.+.+++-+..+..+-.....+.- .-|.....+.+..+|-+.|-.+-.... ..++........|...+
T Consensus 79 ~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~-------~~~~~ra~~~p~H~~~G 151 (179)
T cd08762 79 LLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW-------APMWLRALVKPIHVFFG 151 (179)
T ss_pred HHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CchhHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 012916 257 FVIYTGLFWTAL 268 (453)
Q Consensus 257 ~~ll~~l~~~~~ 268 (453)
.+++.+.+.++.
T Consensus 152 ~~if~Laiat~~ 163 (179)
T cd08762 152 AMILVLSIASCI 163 (179)
T ss_pred HHHHHHHHHHHH
No 65
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=23.95 E-value=9.2e+02 Score=25.93 Aligned_cols=61 Identities=16% Similarity=-0.048 Sum_probs=37.3
Q ss_pred hccCchhhhHHHHHHHHHHHHHHHHHHHHH---Hhccc----chhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 344 FFENTSMVQLDHRILATTTLLSIGALWWST---RKLDI----HPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 344 ~~~~~~~iq~~HR~~A~~v~l~~l~l~~~~---~r~~~----~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
+++...+.++.|++.|..+....+...+.+ .|.+. ++..+......++..+.|...|-..-
T Consensus 169 ~~NP~~~~~~~H~~~aa~~~g~f~v~~v~A~~llr~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~~g 236 (436)
T PF01654_consen 169 FFNPSFWPRFLHMLLAAYLTGGFVVAGVSAYYLLRGRDREYFRKSLKIGLVIGLIAAILQPFSGDWQG 236 (436)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333345789999999987765555554433 33222 22334444566667789999987744
No 66
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=23.79 E-value=2.6e+02 Score=27.58 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhHHH----HHHHHHHHHHHHHHHHHHHhc
Q 012916 181 WGRGLGIIFALPFSYFLRKGYITLRLGLKL----SALFALGAGQGLIGWWMVKSG 231 (453)
Q Consensus 181 ~a~~~gl~~l~~~~~~~~~~~~~~~~~~~~----~~~~~lv~~Q~~LG~~tV~~~ 231 (453)
.|+..|++.++-.+..+.||..+++.+... ..++++..+|.++|-.+-..+
T Consensus 92 ~G~iaGv~~liG~~~L~~RR~~~~rvR~~St~~D~f~lilLla~~~~Gl~~~~~~ 146 (228)
T COG2181 92 LGGIAGVLTLIGLTLLLLRRLFDPRVRATSTPSDIFALLLLLAQLLLGLYATPFS 146 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccceeecCChhHHHHHHHHHHHHHhhhhhhhhc
Confidence 345666655443333333444444444432 256677778888887766654
No 67
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=23.67 E-value=6.2e+02 Score=23.82 Aligned_cols=79 Identities=16% Similarity=0.060 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhc---------------------c-c-c------hhHHHHHHHHHHHHHHHHHHH
Q 012916 350 MVQLDHRILATTTLLSIGALWWSTRKL---------------------D-I-H------PAIRSLIGSTVGMAALQVTLG 400 (453)
Q Consensus 350 ~iq~~HR~~A~~v~l~~l~l~~~~~r~---------------------~-~-~------~~~r~~a~~ll~Lv~lQi~LG 400 (453)
....+|+..+++..+..+...+...|. + . + +..|..-..+.++..+|++.|
T Consensus 47 ~~~~~H~~~g~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TG 126 (204)
T TIGR01583 47 VAKNLHPFAGILFFISIIPMFLKWWRRMIPAKYDIRWMMKVGGYLSKIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITG 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhchHhcCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 456789999988766655443222111 0 0 1 112333344555678999999
Q ss_pred HHHHHhhcch---------HHHHHHHHHHHHHHHHHH
Q 012916 401 ISTLLSYVPV---------SLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 401 i~~v~~~lP~---------~l~~lH~~~A~lLl~~l~ 428 (453)
..+.....|. +...+|...+.++.+..+
T Consensus 127 l~m~~~~~~~~~~~~~~~~~~~~~H~~~a~l~~~~vi 163 (204)
T TIGR01583 127 IFMWFLDFPSTAFSIELLRISALIHNFSAIILAVGFI 163 (204)
T ss_pred HHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998543332 456799999988776654
No 68
>MTH00033 CYTB cytochrome b; Provisional
Probab=23.52 E-value=8.9e+02 Score=25.66 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHHH
Q 012916 294 LPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGALW 370 (453)
Q Consensus 294 ~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~ 370 (453)
-.+.....+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-..++++..-.
T Consensus 32 sll~~~~~~qiiTGi~La~~Y~---------------p~~~~Af~Sv~~i~~~-v~~Gw~iR~~H~~gAs~~f~~~ylHi 95 (383)
T MTH00033 32 SLLCLCLGIQILTGVLLAMHYR---------------SDVSLAFSSVAHIVRD-VNYGWILRYVHANGASLFFICVYCHI 95 (383)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc---------------CCCcchHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999998875432 2211111110 011 01234689999999988777666555
Q ss_pred HHHHhcc-cchhHHHHH-HHHHHHHHHHHHHHHHH
Q 012916 371 WSTRKLD-IHPAIRSLI-GSTVGMAALQVTLGIST 403 (453)
Q Consensus 371 ~~~~r~~-~~~~~r~~a-~~ll~Lv~lQi~LGi~~ 403 (453)
.+..-.+ ..+...+.. ..++.++...+.+|...
T Consensus 96 ~R~~~~gsY~r~~~W~~Gv~ll~l~m~~aF~GYvL 130 (383)
T MTH00033 96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVL 130 (383)
T ss_pred HHHHHcccccChHHHHHhHHHHHHHHHHHHhhhcc
Confidence 4432221 112223333 33444555666677653
No 69
>MTH00156 CYTB cytochrome b; Provisional
Probab=23.17 E-value=4.6e+02 Score=27.41 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+.-.+.+...+|++.|.+.+-.+. |+.+...+.. .++ ....-.++..|+..|-...+++..
T Consensus 23 ~G~ll~~~~~~qiiTG~~L~~~Y~---------------p~~~~A~~Sv~~i~~~-v~~Gw~iR~~H~~gas~~~~~~~l 86 (356)
T MTH00156 23 FGSLLGLCLMIQIITGLFLAMHYT---------------ADIELAFSSVIHICRD-VNYGWLLRTLHANGASFFFICIYL 86 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---------------CCchhHHHHHHHHHcc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 344555677889999998875432 2211111110 111 012346899999999887777655
Q ss_pred HHHH
Q 012916 369 LWWS 372 (453)
Q Consensus 369 l~~~ 372 (453)
-..+
T Consensus 87 H~~r 90 (356)
T MTH00156 87 HIGR 90 (356)
T ss_pred HHHH
Confidence 5444
No 70
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=22.85 E-value=7.6e+02 Score=24.52 Aligned_cols=38 Identities=26% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhh--------cchHHHHHHHHHHHHHHHHHH
Q 012916 391 GMAALQVTLGISTLLSY--------VPVSLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 391 ~Lv~lQi~LGi~~v~~~--------lP~~l~~lH~~~A~lLl~~l~ 428 (453)
+++.+|++.|.....-. ...++..+|.+.+.++++..+
T Consensus 190 ~~~~~livTGl~l~~p~~~~~~~~g~~~~~~~iH~~~a~lli~fii 235 (261)
T PRK15006 190 GLVPLLLLTGLLCLYPQAVGDVFPGVRYWLLQLHFALAFISLFFIF 235 (261)
T ss_pred HHHHHHHHHHHHHHhHhhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44558999998875321 223678999999998877765
No 71
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=22.81 E-value=95 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHhcc
Q 012916 173 WMEYAHRMWGRGLGIIFALPFSYFLRKGY 201 (453)
Q Consensus 173 ~iE~~HRl~a~~~gl~~l~~~~~~~~~~~ 201 (453)
-.+--||+++.++-...+..+.|++.|++
T Consensus 146 R~Q~RHR~IG~~VlA~~VA~L~~~F~RR~ 174 (215)
T PF05084_consen 146 RTQKRHRLIGAVVLAVSVAMLTWFFLRRT 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36778999998876666555555554443
No 72
>COG1290 QcrB Cytochrome b subunit of the bc complex [Energy production and conversion]
Probab=22.70 E-value=6.7e+02 Score=26.56 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhHHhhhccc---cccCCCCCCCCCCccCCccccchhhhhhhccCchhhhHHHHHHHHHHHHHHHHHH
Q 012916 294 LPVSFIVGITAVSGAFVAGNDA---GHAYNTFPKMGDTWIPDDIFNMKPLIRNFFENTSMVQLDHRILATTTLLSIGALW 370 (453)
Q Consensus 294 ~~~~vl~~lqi~lGa~Vr~~~A---Glac~~wP~c~g~~iP~~~f~~~p~~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~ 370 (453)
.........|++.|.+..-.+. +.+.+++|. +.. +.. ..-.+...|+..|....+.+..-.
T Consensus 43 ~l~~~~~v~~v~tGi~L~~~Y~p~~~~a~~S~~~-----i~~---~V~--------~Gw~lr~~H~~~A~~m~~~~~iHm 106 (381)
T COG1290 43 GLLLFLFVIQVITGIFLALYYVPSAGLAFPSVPF-----IMR---EVP--------YGWLLRYMHLWGASLMFALVYLHM 106 (381)
T ss_pred HHHHHHHHHHHHHHHHheeEecCCCccccccchh-----hhc---cCC--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678889999999887543 233333332 111 111 123588999999988776666555
Q ss_pred HHHHh---cccchhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 012916 371 WSTRK---LDIHPAIRSLIGSTV-GMAALQVTLGISTLL 405 (453)
Q Consensus 371 ~~~~r---~~~~~~~r~~a~~ll-~Lv~lQi~LGi~~v~ 405 (453)
.+..- .+++|...+....+. .+...+...|....+
T Consensus 107 ~r~~~~GaykkPRel~Wi~Gvll~ll~~~~a~~GY~Lp~ 145 (381)
T COG1290 107 FRGFFYGAYKKPRELNWILGVLLFLLTMATAFFGYSLPW 145 (381)
T ss_pred hhhhccceecCcHHHHHHHHHHHHHHHHHHHHhhccChh
Confidence 44321 224555554443333 333455555544443
No 73
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.28 E-value=6.2e+02 Score=23.33 Aligned_cols=90 Identities=14% Similarity=-0.079 Sum_probs=51.1
Q ss_pred hhhhHhHHHHHHHHHHHHHH-HHHHhccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Q 012916 175 EYAHRMWGRGLGIIFALPFS-YFLRKGYI-----TLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVSPYR 248 (453)
Q Consensus 175 E~~HRl~a~~~gl~~l~~~~-~~~~~~~~-----~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vsp~~ 248 (453)
-..|..+-.+..++.++.+. .+..+... .....+.....+++.++|.+.|.......-.... +.-...+
T Consensus 58 ~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~-----~~~r~~~ 132 (183)
T cd08761 58 VRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRG-----ESKAKKL 132 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcc-----cccHHHH
Confidence 34788777655444433222 22222211 1234555667888999999999987763211000 0113445
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012916 249 LTAHLTSAFVIYTGLFWTALS 269 (453)
Q Consensus 249 ~~~Hl~~a~~ll~~l~~~~~~ 269 (453)
-..|-..+.+++.+.......
T Consensus 133 ~~~H~~~G~~~~~l~~~t~~l 153 (183)
T cd08761 133 KKYHRLSGYVAYLLGLATLVL 153 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999888888777665543
No 74
>PRK11513 cytochrome b561; Provisional
Probab=22.17 E-value=5e+02 Score=24.07 Aligned_cols=65 Identities=8% Similarity=-0.025 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHH-HHHHHHHcCCCchhhhcc
Q 012916 380 PAIRSLIGSTVGMAALQVTLGISTLLS--YVPVSLGTAHQAGALTLLTL-MILLNHTTRKPSVSLLKS 444 (453)
Q Consensus 380 ~~~r~~a~~ll~Lv~lQi~LGi~~v~~--~lP~~l~~lH~~~A~lLl~~-l~~L~~~~r~~~~~~~~~ 444 (453)
+..+..=+++.+++++|.+.|...-.. .....+-..|...+.+++.+ +..+.++.+.++++....
T Consensus 7 ~~~~~lHWl~a~li~~~~~~~~~~~~~~~~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~ 74 (176)
T PRK11513 7 RLQIGIHWLVFLLVIVAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPK 74 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 334444445556666666666443211 11234457899888877775 445667777655443333
No 75
>MTH00053 CYTB cytochrome b; Provisional
Probab=21.23 E-value=9.8e+02 Score=25.33 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHHHHH
Q 012916 295 PVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGALWW 371 (453)
Q Consensus 295 ~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~l~~ 371 (453)
.+.+...+|++.|.+.+-.+ .|+.+...+.. .++ ....-.++..|+..|-..++++..-..
T Consensus 37 ll~~~~~~qiiTGi~L~~~Y---------------~p~~~~Af~Sv~~i~~~-v~~Gw~iR~~H~~gas~~f~~~ylHi~ 100 (381)
T MTH00053 37 LLGFCLIIQIITGIFLAMHY---------------CADVNLAFSSVAHITRD-VNYGFILRYLHANGASMFFLCVYFHIG 100 (381)
T ss_pred HHHHHHHHHHHHHHHHHhec---------------cCChHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777999999987543 23221111110 111 012346899999999888776655544
Q ss_pred HHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 372 STRKLD--IHPAIRSLIGSTVGMAALQVTLGISTL 404 (453)
Q Consensus 372 ~~~r~~--~~~~~r~~a~~ll~Lv~lQi~LGi~~v 404 (453)
+..-.+ +.+........++.++...+.+|...-
T Consensus 101 R~~~~gsy~~~~~W~~Gv~l~~l~m~~af~GYvLp 135 (381)
T MTH00053 101 RGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135 (381)
T ss_pred HHHHHcccCCchHHHhhHHHHHHHHHHHHHHhccc
Confidence 432111 122222223344555567777776543
No 76
>PF11097 DUF2883: Protein of unknown function (DUF2883); InterPro: IPR020112 This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
Probab=20.69 E-value=40 Score=26.67 Aligned_cols=9 Identities=11% Similarity=-0.171 Sum_probs=7.6
Q ss_pred ccCCCCCCC
Q 012916 123 GLSMTDWKF 131 (453)
Q Consensus 123 GL~cpdWP~ 131 (453)
=||||+||.
T Consensus 8 YLg~pg~p~ 16 (75)
T PF11097_consen 8 YLGYPGLPP 16 (75)
T ss_pred EEeCCCCCh
Confidence 379999996
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.15 E-value=91 Score=27.46 Aligned_cols=6 Identities=17% Similarity=-0.230 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012916 183 RGLGII 188 (453)
Q Consensus 183 ~~~gl~ 188 (453)
.++.++
T Consensus 7 iii~~i 12 (130)
T PF12273_consen 7 IIIVAI 12 (130)
T ss_pred HHHHHH
Confidence 333333
Done!