Query 012916
Match_columns 453
No_of_seqs 223 out of 1492
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 18:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfc_ f.21.1.1 (C:) Formate 53.0 60 0.0044 27.0 14.5 80 349-428 50-166 (216)
2 d1ppjc2 f.21.1.2 (C:15-260) Mi 48.6 75 0.0055 27.8 11.5 96 292-403 19-119 (246)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 44.5 1E+02 0.0074 27.2 12.2 98 292-405 32-136 (261)
4 d1q90b_ f.21.1.2 (B:) Cytochro 34.2 1.3E+02 0.0096 25.5 11.4 97 292-404 33-136 (212)
5 d1kqfc_ f.21.1.1 (C:) Formate 29.2 1.4E+02 0.01 24.4 14.6 25 94-118 11-35 (216)
6 d1y5ic1 f.21.3.1 (C:1-225) Res 28.0 88 0.0064 26.5 8.2 49 180-228 92-144 (225)
7 d1q90b_ f.21.1.2 (B:) Cytochro 21.9 2.2E+02 0.016 24.0 14.0 53 172-224 77-132 (212)
8 d1nekd_ f.21.2.2 (D:) Succinat 19.4 1.7E+02 0.012 21.8 10.9 85 176-269 15-109 (113)
9 d1sfea1 a.4.2.1 (A:93-176) Ada 11.6 62 0.0045 23.6 2.5 22 4-25 36-61 (84)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 10.4 98 0.0072 18.7 2.7 29 98-126 4-32 (34)
No 1
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=53.00 E-value=60 Score=27.01 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------------cchhHHHHHHHHHHHHHHHHHH
Q 012916 349 SMVQLDHRILATTTLLSIGALWWSTRKLD-----------------------------IHPAIRSLIGSTVGMAALQVTL 399 (453)
Q Consensus 349 ~~iq~~HR~~A~~v~l~~l~l~~~~~r~~-----------------------------~~~~~r~~a~~ll~Lv~lQi~L 399 (453)
......|++++++.....+...+...+.. .++..+......+++.+.+++.
T Consensus 50 ~~~~~~H~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~qkl~~~~~~~~~~~~~~T 129 (216)
T d1kqfc_ 50 QMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVT 129 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhcCCCCCccHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34677899998877655554443322211 0122333444556667889999
Q ss_pred HHHHHHhh----cc----hHHHHHHHHHHHHHHHHHH
Q 012916 400 GISTLLSY----VP----VSLGTAHQAGALTLLTLMI 428 (453)
Q Consensus 400 Gi~~v~~~----lP----~~l~~lH~~~A~lLl~~l~ 428 (453)
|..+.... ++ .++..+|...+.++++..+
T Consensus 130 Gl~l~~~~~~~~~~~~~~~~~~~iH~~~~~l~~~~vi 166 (216)
T d1kqfc_ 130 GVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAIL 166 (216)
T ss_dssp HHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99876431 22 2556799998888777665
No 2
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=48.58 E-value=75 Score=27.77 Aligned_cols=96 Identities=8% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh---hhhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP---LIRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p---~~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+...+.+...+|++.|.+.+--+ .|+.+...+. ..++ ....-.++..|+..|-...+++..
T Consensus 19 ~G~ll~~~~~iqiiTGi~L~~~Y---------------~p~~~~A~~Sv~~i~~~-v~~G~~iR~~H~~gas~~~~~~~l 82 (246)
T d1ppjc2 19 FGSLLGICLILQILTGLFLAMHY---------------TSDTTTAFSSVTHICRD-VNYGWIIRYMHANGASMFFICLYM 82 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---------------CCCTTTHHHHHHHHHHH-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------cCChHHHHHHHHHhcCc-ccCchhhcchhHhHHHHHHHHHHH
Confidence 34556677889999999987532 2322111111 1111 112346899999999887766665
Q ss_pred HHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012916 369 LWWSTRKL--DIHPAIRSLIGSTVGMAALQVTLGIST 403 (453)
Q Consensus 369 l~~~~~r~--~~~~~~r~~a~~ll~Lv~lQi~LGi~~ 403 (453)
-..+..-. .+.++.......+..++..++.+|...
T Consensus 83 Hm~r~~~~~sy~~~~~w~~G~~l~~l~m~~af~GY~L 119 (246)
T d1ppjc2 83 HVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVL 119 (246)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHeeccC
Confidence 54443211 122333333445556667788888653
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.52 E-value=1e+02 Score=27.18 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchhh---hhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKPL---IRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p~---~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+...+.+...+|++.|.+.+--+ .|+.+...+.. .++ ....-.++..|+..|-...+++..
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y---------------~p~~~~A~~Sv~~i~~~-v~~Gw~iR~~H~~ga~~~~~~~~l 95 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHY---------------SSNIELAFSSVEHIMRD-VHNGYILRYLHANGASFFFMVMFM 95 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---------------CCSTTTHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhee---------------cCChHHHHHHHHHHHhh-hccChhhhhcccccHHHHHHHHHH
Confidence 34555667789999999987532 23322111111 111 112346899999999887777666
Q ss_pred HHHHHH---hcccchhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 012916 369 LWWSTR---KLDIHPAIRSLIG-STVGMAALQVTLGISTLL 405 (453)
Q Consensus 369 l~~~~~---r~~~~~~~r~~a~-~ll~Lv~lQi~LGi~~v~ 405 (453)
-..+.. ..+.+|...+..+ .++.++...+.+|...-+
T Consensus 96 H~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw 136 (261)
T d3cx5c2 96 HMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVY 136 (261)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCC
Confidence 555442 2233444544444 444555677778876544
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=34.24 E-value=1.3e+02 Score=25.54 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccccCCCCCCCCCCccCCccccchh---hhhhhccCchhhhHHHHHHHHHHHHHHHH
Q 012916 292 LALPVSFIVGITAVSGAFVAGNDAGHAYNTFPKMGDTWIPDDIFNMKP---LIRNFFENTSMVQLDHRILATTTLLSIGA 368 (453)
Q Consensus 292 la~~~~vl~~lqi~lGa~Vr~~~AGlac~~wP~c~g~~iP~~~f~~~p---~~~~~~~~~~~iq~~HR~~A~~v~l~~l~ 368 (453)
+.-.+.....+|++.|.+.+-.+ .|+.+...+. ..++. ...-.++..|+..|-...+++..
T Consensus 33 ~Gsll~~~~~iqi~TGi~L~~~Y---------------~p~~~~A~~Sv~~I~~~v-~~G~liR~lH~~gAs~~~~~~~l 96 (212)
T d1q90b_ 33 IGGITFTCFLVQVATGFAMTFYY---------------RPTVAEAFASVQYIMTDV-NFGWLIRSIHRWSASMMVLMMVL 96 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC---------------CCSTTTHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HhhhhHHHHHHHHHhhhC-CCchhhcccccccchHHHHHHHH
Confidence 44566677889999999887432 2332211111 11111 12346899999999988777766
Q ss_pred HHHHHHh---cccchhHHHHHH-HHHHHHHHHHHHHHHHH
Q 012916 369 LWWSTRK---LDIHPAIRSLIG-STVGMAALQVTLGISTL 404 (453)
Q Consensus 369 l~~~~~r---~~~~~~~r~~a~-~ll~Lv~lQi~LGi~~v 404 (453)
-..+..- .+.+|...+... .++.+......+|...-
T Consensus 97 Hm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lp 136 (212)
T d1q90b_ 97 HVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLP 136 (212)
T ss_dssp HHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcc
Confidence 6655432 233445555444 44455567777776543
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=29.23 E-value=1.4e+02 Score=24.40 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 012916 94 KAVGIWLFGSAAWVFSMVILGGITR 118 (453)
Q Consensus 94 ~~~~~~~~~~~~l~~~~I~~Ga~Vr 118 (453)
...|.+=|..++..+++++.|-...
T Consensus 11 ~~~Rl~HW~~a~~~i~L~~TGl~l~ 35 (216)
T d1kqfc_ 11 FIDRACHWTVVICFFLVALSGISFF 35 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666667777777776664
No 6
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=27.98 E-value=88 Score=26.47 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhH----HHHHHHHHHHHHHHHHHHHH
Q 012916 180 MWGRGLGIIFALPFSYFLRKGYITLRLGL----KLSALFALGAGQGLIGWWMV 228 (453)
Q Consensus 180 l~a~~~gl~~l~~~~~~~~~~~~~~~~~~----~~~~~~~lv~~Q~~LG~~tV 228 (453)
..+.+.|+++++..+..+.||...++.+. .-.+.++++.++.+.|-.+-
T Consensus 92 ~~g~i~g~l~liG~~~ll~RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~~~ 144 (225)
T d1y5ic1 92 FAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTI 144 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566554444333333333333222 12356666777888886643
No 7
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.92 E-value=2.2e+02 Score=24.03 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=32.7
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHH--HHHHhcccchhhhHHH-HHHHHHHHHHHHHH
Q 012916 172 YWMEYAHRMWGRGLGIIFALPFS--YFLRKGYITLRLGLKL-SALFALGAGQGLIG 224 (453)
Q Consensus 172 ~~iE~~HRl~a~~~gl~~l~~~~--~~~~~~~~~~~~~~~~-~~~~~lv~~Q~~LG 224 (453)
..+...|+.-|-..-++..+-.. ++....+.+|+..|.. ..+++++...+.+|
T Consensus 77 ~liR~lH~~gAs~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftG 132 (212)
T d1q90b_ 77 WLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTG 132 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhh
Confidence 46999999998776554443332 2222344566676654 35666777888777
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=19.40 E-value=1.7e+02 Score=21.80 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=49.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhccc----------chhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcc
Q 012916 176 YAHRMWGRGLGIIFALPFSYFLRKGYI----------TLRLGLKLSALFALGAGQGLIGWWMVKSGLEEPPSEYAQPRVS 245 (453)
Q Consensus 176 ~~HRl~a~~~gl~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~lv~~Q~~LG~~tV~~~L~~~~~~~~~~~vs 245 (453)
+.||+.|.++..+.+.....+...... ++..+....+.++.+..-+.+|..+|..+-.. + .
T Consensus 15 ~~qRvSAv~l~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~-------~--~ 85 (113)
T d1nekd_ 15 ILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVK-------P--L 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------S--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhHhhhHHHhcC-------C--h
Confidence 378999987766554333222111111 11223334456667789999999999964322 2 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 012916 246 PYRLTAHLTSAFVIYTGLFWTALS 269 (453)
Q Consensus 246 p~~~~~Hl~~a~~ll~~l~~~~~~ 269 (453)
..+...+....+..+.+.++....
T Consensus 86 ~~r~~~~~~~~~~~~~~~~~~i~~ 109 (113)
T d1nekd_ 86 ALRLMLQLVIVVALVVYVIYGFVV 109 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777666666655443
No 9
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=11.60 E-value=62 Score=23.62 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=17.2
Q ss_pred hhHHHHHHhhcccchh---hh-hccC
Q 012916 4 SRVISLILKRNKASLN---SI-LANF 25 (453)
Q Consensus 4 ~~~~~~~~~~~~~~~~---~~-~~~~ 25 (453)
.|+|++++++|+...+ |+ +.+.
T Consensus 36 ~RaVg~a~~~Np~~~~iPcHRVv~s~ 61 (84)
T d1sfea1 36 VRAVASACAANKLAIVIPCHRVVRGD 61 (84)
T ss_dssp HHHHHHHHHTCCBBTTBCGGGEECTT
T ss_pred HHHHHHHHhcCCCCCcCCceeeeccC
Confidence 6999999999998853 88 4443
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.44 E-value=98 Score=18.71 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccCC
Q 012916 98 IWLFGSAAWVFSMVILGGITRLTRSGLSM 126 (453)
Q Consensus 98 ~~~~~~~~l~~~~I~~Ga~Vr~T~SGL~c 126 (453)
-|+..+..-+..+-++|-+--..-||+|-
T Consensus 4 LWlv~tv~G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 4 LWIVATVAGMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSTTS
T ss_pred EEEeeehhhhhhHhheeeeeeeeeccccc
Confidence 47777777777777888888888888874
Done!