BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012917
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo
sapiens GN=RAB3GAP2 PE=1 SV=1
Length = 1393
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 179/394 (45%), Gaps = 50/394 (12%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y G L+ QL++ +L+L+ R R EE+ ++ P
Sbjct: 156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 216 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 267
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G + F E ++ L+
Sbjct: 268 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLL 327
Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
A+ SK+ A F+ S + W+S E++ +K +PK + A+PL L D
Sbjct: 328 SHVALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPD 382
Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
R GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++ + + +
Sbjct: 383 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHER 442
Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 419
A ++P S L I+APR+GI+EVW + GPR+ K ++L P Y
Sbjct: 443 VPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGY 502
Query: 420 RFG--SSMASSPYVP--LEVFLLNGDSGQLSVLN 449
+ +++ S + P ++ L++ SG + +N
Sbjct: 503 KIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVN 536
>sp|Q5U1Z0|RBGPR_RAT Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus
norvegicus GN=Rab3gap2 PE=1 SV=2
Length = 1386
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 164/362 (45%), Gaps = 47/362 (12%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y +G L+ QL++ R+L+L+ R R EE+ ++ P
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G F E ++ L+
Sbjct: 266 ASIGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325
Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
A+ SK+ A FS S + W+S E++ +K +PK + A+PL L D
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPD 380
Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
R GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++++ + +
Sbjct: 381 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHER 440
Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 419
++P S L I+APR+GI+EVW + GPR+ K ++L P Y
Sbjct: 441 VPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGY 500
Query: 420 RF 421
+
Sbjct: 501 KI 502
>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus
musculus GN=Rab3gap2 PE=1 SV=2
Length = 1366
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 158/359 (44%), Gaps = 41/359 (11%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y +G L+ QL++ ++L+L+ R R EE+ ++ P
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G F E ++ L+
Sbjct: 266 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325
Query: 256 G----AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTC---LKDHPR 308
A+ SK+ A FS S + W+S+ + + A+PL L D R
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEPATPLAVRFGLPDSRR 383
Query: 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++++ + +
Sbjct: 384 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPE 443
Query: 368 SAYYAPVK-----SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRF 421
++P S L I+APR+GI+EVW + GPR+ K ++L P Y+
Sbjct: 444 KGGFSPFGNTQGPSRVAQFLVIYAPRRGILEVWNTQQGPRVGAFNVGKHCRLLYPGYKI 502
>sp|Q9VKB9|RBGPR_DROME Rab3 GTPase-activating protein regulatory subunit OS=Drosophila
melanogaster GN=rab3-GAP PE=1 SV=2
Length = 1341
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 152/359 (42%), Gaps = 52/359 (14%)
Query: 81 AIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAE 140
AIEW +AVG G Y G + Q ++ ++++ + R A+
Sbjct: 100 AIEW------TCVAVGLCSGMVTFYTDSGVKLFSQCCQEDPVIGVKLQSAPR---HSEAD 150
Query: 141 EEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSY---ERLPHQ 197
+ ++ P L G +I L + QR + + +SY + +P Q
Sbjct: 151 SLLYIIYPRCLCFIQGQDILPTLNNCRHNV----------QRGALE-RSSYPTADVVPFQ 199
Query: 198 LWNV--SKYGPCADAAITGLMPPPLMEVQSSQR----YFCAV-----------TIGEDSV 240
+ + DAAI+ PP + Q YF V G +
Sbjct: 200 KYKFKQEREAVINDAAISTTQRPPTYDYIVQQTIGLGYFAKVHATPPRSSQVLAAGAEPY 259
Query: 241 ISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKKSE-PKPQSFAR 296
+ F+ E +G + V+ + + L + R+ + SP++S P P A
Sbjct: 260 LGFFQAEEGYKTMSLGEVAKDVIGIAYKNL--LGGIFRRAPEPLPSPEESPLPVPTKEAP 317
Query: 297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 356
L D R G L+++P G LA +TD+L R++L+DT +++R+WKGYRDA C F+
Sbjct: 318 MRIRCRLYDGKRDGLTLSVAPGGRLAVVTDNLDRVMLVDTHQAIILRVWKGYRDAQCAFV 377
Query: 357 EMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415
+ K+ + K+ L L I+APR G +++W ++ GP++ +K +++
Sbjct: 378 PV---KEKSVRGIKTHKRKA---LFLVIYAPRMGCLDIWALQNGPKVAAFNVSKSGQLM 430
>sp|Q22670|RBGPR_CAEEL Rab3 GTPase-activating protein regulatory subunit OS=Caenorhabditis
elegans GN=rbg-2 PE=3 SV=1
Length = 1307
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS 367
R + ++ SP A+TD + R+L++D + VV ++KGYRDAS ++ + + A
Sbjct: 374 RVAQNVSRSPDCQYVAVTDRMARVLVIDIASRQVVLIFKGYRDASISWVSVTEDDRVAQ- 432
Query: 368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410
L I APR+ ++EVW + R+ CA+
Sbjct: 433 -------------FLTIFAPRRSLLEVWTVLGNVRV----CAQ 458
>sp|Q2RFN9|RPOB_MOOTA DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica
(strain ATCC 39073) GN=rpoB PE=3 SV=1
Length = 1141
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 292 QSFARASPLTCLKDHP--RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 349
Q F R++ TC+ P RKGER++ + + TD G L L LV W+GY
Sbjct: 625 QKFVRSNQGTCINQKPIVRKGERVSAGQTIADGPSTDQ-GE-LALGRNILVAFMTWEGYN 682
Query: 350 DASCVFM-EMLVNKDAATS 367
+ + E LV D TS
Sbjct: 683 YEDAILISEKLVKDDIFTS 701
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 295 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 351
ARA L LK H R E ++ SP A R++L D Q+ ++RL G+RD+
Sbjct: 93 ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDS 149
>sp|Q5RJ54|ZN187_MOUSE Zinc finger protein 187 OS=Mus musculus GN=Znf187 PE=2 SV=1
Length = 466
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 288 EPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRI 331
EP P+ AR P L P + + T S +G+L A TDS GR+
Sbjct: 145 EPAPRREAREQPGCALPQKPEERGKETRSENGNLIAGTDSCGRM 188
>sp|Q85BW1|RPOB_ANTFO DNA-directed RNA polymerase subunit beta OS=Anthoceros formosae
GN=rpoB PE=2 SV=1
Length = 1071
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 285 KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344
K+ E K + R++ TC+ + PR R + LA + G L L LV
Sbjct: 603 KEVETKLVIYQRSNNSTCIHEKPRIQLREYVKKGQILADGRATAGGELALGKNILVAYMP 662
Query: 345 WKGYRDASCVFM-EMLVNKDAATS 367
W+GY + + E L+++D TS
Sbjct: 663 WEGYNFEDAILISERLIHEDIYTS 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,730,130
Number of Sequences: 539616
Number of extensions: 6734375
Number of successful extensions: 15122
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15107
Number of HSP's gapped (non-prelim): 12
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)