Query 012917
Match_columns 453
No_of_seqs 98 out of 117
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14655 RAB3GAP2_N: Rab3 GTPa 100.0 4E-105 8E-110 827.1 40.0 375 28-415 1-415 (415)
2 KOG2727 Rab3 GTPase-activating 100.0 1E-102 3E-107 839.3 23.1 426 1-452 1-464 (1244)
3 cd00200 WD40 WD40 domain, foun 97.9 0.019 4E-07 51.9 27.8 84 305-407 175-258 (289)
4 KOG0273 Beta-transducin family 97.8 0.00023 5.1E-09 75.4 12.7 52 296-347 441-492 (524)
5 KOG0271 Notchless-like WD40 re 97.0 0.042 9.1E-07 57.8 17.1 92 304-416 364-467 (480)
6 KOG0266 WD40 repeat-containing 96.9 0.016 3.6E-07 61.6 14.5 93 300-411 196-289 (456)
7 KOG0266 WD40 repeat-containing 96.9 0.011 2.4E-07 62.8 12.7 86 299-403 238-323 (456)
8 KOG0291 WD40-repeat-containing 96.9 0.48 1E-05 53.6 25.1 305 34-413 101-437 (893)
9 cd00200 WD40 WD40 domain, foun 96.8 0.014 2.9E-07 52.8 10.9 84 306-408 134-217 (289)
10 KOG0319 WD40-repeat-containing 96.8 0.2 4.4E-06 56.1 21.1 92 299-411 497-590 (775)
11 PTZ00421 coronin; Provisional 96.6 0.049 1.1E-06 59.1 15.4 94 299-411 117-211 (493)
12 KOG0649 WD40 repeat protein [G 96.5 0.015 3.3E-07 58.0 9.6 90 309-417 116-205 (325)
13 KOG0299 U3 snoRNP-associated p 96.2 0.0065 1.4E-07 64.5 5.4 50 305-354 200-249 (479)
14 PLN00181 protein SPA1-RELATED; 95.9 4.3 9.3E-05 46.2 28.8 92 33-128 487-584 (793)
15 PTZ00420 coronin; Provisional 95.7 0.22 4.9E-06 55.1 14.9 129 308-451 168-303 (568)
16 KOG0263 Transcription initiati 95.6 0.039 8.4E-07 61.7 8.3 82 299-399 569-650 (707)
17 KOG1539 WD repeat protein [Gen 95.6 0.3 6.5E-06 55.6 15.0 299 77-411 203-536 (910)
18 PF12341 DUF3639: Protein of u 95.6 0.019 4E-07 38.7 3.5 27 76-106 1-27 (27)
19 PTZ00421 coronin; Provisional 95.5 0.21 4.5E-06 54.3 13.5 81 303-402 164-249 (493)
20 TIGR03866 PQQ_ABC_repeats PQQ- 95.5 0.18 4E-06 47.6 11.6 82 310-411 209-292 (300)
21 KOG0263 Transcription initiati 95.4 0.053 1.2E-06 60.7 8.6 92 299-409 527-618 (707)
22 KOG0271 Notchless-like WD40 re 95.2 0.1 2.2E-06 55.0 9.2 98 298-409 148-246 (480)
23 KOG1446 Histone H3 (Lys4) meth 95.0 0.36 7.9E-06 49.5 12.4 85 308-408 188-272 (311)
24 PTZ00420 coronin; Provisional 95.0 0.28 6E-06 54.3 12.5 92 301-412 119-211 (568)
25 TIGR03866 PQQ_ABC_repeats PQQ- 94.9 0.84 1.8E-05 43.1 14.0 78 311-407 34-112 (300)
26 KOG0296 Angio-associated migra 94.8 0.78 1.7E-05 48.2 14.5 145 303-450 102-272 (399)
27 KOG0284 Polyadenylation factor 93.7 0.1 2.2E-06 55.3 5.2 96 309-423 182-280 (464)
28 KOG0272 U4/U6 small nuclear ri 93.6 0.34 7.4E-06 51.5 8.9 92 307-419 303-408 (459)
29 KOG0639 Transducin-like enhanc 93.5 0.08 1.7E-06 57.4 4.3 77 308-404 510-587 (705)
30 KOG0319 WD40-repeat-containing 93.4 0.73 1.6E-05 51.9 11.6 100 306-424 462-565 (775)
31 KOG0265 U5 snRNP-specific prot 92.7 0.36 7.9E-06 49.5 7.4 74 312-403 95-168 (338)
32 KOG4328 WD40 protein [Function 92.6 12 0.00027 40.5 18.7 81 75-164 185-274 (498)
33 KOG0316 Conserved WD40 repeat- 92.6 0.48 1E-05 47.5 7.8 84 297-399 49-132 (307)
34 PF14727 PHTB1_N: PTHB1 N-term 92.3 0.98 2.1E-05 48.4 10.5 83 67-154 10-102 (418)
35 PLN00181 protein SPA1-RELATED; 92.2 1.2 2.6E-05 50.5 11.7 82 309-408 534-616 (793)
36 KOG0315 G-protein beta subunit 92.2 0.87 1.9E-05 46.0 9.2 90 299-407 207-297 (311)
37 KOG0295 WD40 repeat-containing 92.2 18 0.00039 38.4 19.9 108 309-422 237-349 (406)
38 TIGR02658 TTQ_MADH_Hv methylam 92.2 2.9 6.3E-05 43.8 13.5 76 316-411 8-98 (352)
39 KOG0279 G protein beta subunit 92.0 2 4.3E-05 43.9 11.5 99 302-417 100-209 (315)
40 PF00400 WD40: WD domain, G-be 91.2 0.39 8.4E-06 32.7 4.1 36 300-335 4-39 (39)
41 KOG0308 Conserved WD40 repeat- 90.9 1.2 2.5E-05 49.9 9.4 87 307-412 171-257 (735)
42 KOG1274 WD40 repeat protein [G 90.8 0.99 2.2E-05 51.9 8.9 108 9-127 442-570 (933)
43 KOG0286 G-protein beta subunit 90.6 4.2 9.2E-05 42.0 12.3 51 300-350 179-230 (343)
44 KOG0282 mRNA splicing factor [ 90.2 0.69 1.5E-05 49.9 6.7 113 301-447 208-326 (503)
45 KOG0277 Peroxisomal targeting 90.1 1.9 4.1E-05 43.7 9.3 95 297-410 94-190 (311)
46 KOG1912 WD40 repeat protein [G 89.9 1 2.2E-05 51.5 7.8 93 319-438 79-174 (1062)
47 KOG0318 WD40 repeat stress pro 89.8 1.9 4.2E-05 47.2 9.7 90 303-410 483-573 (603)
48 KOG0310 Conserved WD40 repeat- 89.7 1.6 3.5E-05 47.2 8.9 102 307-410 68-197 (487)
49 KOG1188 WD40 repeat protein [G 89.6 1.3 2.8E-05 46.3 7.9 72 320-410 41-114 (376)
50 KOG2727 Rab3 GTPase-activating 89.5 0.43 9.3E-06 55.1 4.7 84 140-223 150-243 (1244)
51 KOG1273 WD40 repeat protein [G 89.4 1.3 2.8E-05 46.1 7.6 89 301-409 18-106 (405)
52 KOG0291 WD40-repeat-containing 89.3 2.7 5.8E-05 47.9 10.5 100 303-423 51-168 (893)
53 PF02239 Cytochrom_D1: Cytochr 89.0 3.3 7.2E-05 43.3 10.7 80 311-409 40-119 (369)
54 KOG0285 Pleiotropic regulator 89.0 7.6 0.00016 41.2 12.9 108 301-411 145-278 (460)
55 TIGR02658 TTQ_MADH_Hv methylam 88.5 4.3 9.3E-05 42.6 11.0 90 315-418 53-155 (352)
56 KOG1407 WD40 repeat protein [F 88.3 1.7 3.7E-05 44.2 7.5 92 299-409 181-272 (313)
57 PF08662 eIF2A: Eukaryotic tra 88.3 4.1 8.9E-05 38.5 9.9 80 310-408 103-188 (194)
58 PRK03629 tolB translocation pr 88.2 5.6 0.00012 42.0 11.8 50 307-356 242-295 (429)
59 PF15492 Nbas_N: Neuroblastoma 88.0 0.74 1.6E-05 46.8 4.8 43 304-346 226-268 (282)
60 PF15492 Nbas_N: Neuroblastoma 87.6 3.5 7.7E-05 42.0 9.3 75 35-113 3-78 (282)
61 KOG0307 Vesicle coat complex C 87.4 4.1 8.9E-05 47.9 10.8 283 32-401 9-330 (1049)
62 KOG0281 Beta-TrCP (transducin 87.3 3.3 7.1E-05 43.7 9.1 113 308-420 236-372 (499)
63 KOG0283 WD40 repeat-containing 85.8 4 8.8E-05 46.4 9.5 69 88-164 461-541 (712)
64 KOG0318 WD40 repeat stress pro 85.3 15 0.00033 40.6 13.1 94 302-411 185-278 (603)
65 KOG0282 mRNA splicing factor [ 85.2 2.1 4.6E-05 46.3 6.7 67 310-396 435-503 (503)
66 KOG1240 Protein kinase contain 84.8 10 0.00022 45.6 12.2 92 303-409 1189-1284(1431)
67 KOG0316 Conserved WD40 repeat- 84.1 4.2 9.1E-05 41.0 7.7 85 310-411 186-270 (307)
68 PF08596 Lgl_C: Lethal giant l 83.9 6.6 0.00014 41.7 9.7 61 43-106 99-171 (395)
69 KOG0286 G-protein beta subunit 83.7 9.2 0.0002 39.6 10.1 83 309-411 99-187 (343)
70 KOG4640 Anaphase-promoting com 83.6 2.9 6.2E-05 46.8 7.0 86 33-127 24-113 (665)
71 PF08662 eIF2A: Eukaryotic tra 83.3 8.8 0.00019 36.3 9.4 79 309-409 61-144 (194)
72 KOG0289 mRNA splicing factor [ 83.1 6.8 0.00015 42.3 9.2 86 309-411 305-390 (506)
73 PF12894 Apc4_WD40: Anaphase-p 82.8 2.3 4.9E-05 32.0 4.1 36 76-113 11-46 (47)
74 KOG1274 WD40 repeat protein [G 82.6 7.8 0.00017 45.0 10.0 117 310-451 99-218 (933)
75 PF02239 Cytochrom_D1: Cytochr 82.0 9.5 0.00021 39.9 9.9 104 319-444 5-111 (369)
76 KOG0276 Vesicle coat complex C 81.4 35 0.00077 38.7 14.1 220 77-420 56-289 (794)
77 KOG0288 WD40 repeat protein Ti 81.3 3.1 6.6E-05 44.5 5.9 42 310-351 390-431 (459)
78 COG2319 FOG: WD40 repeat [Gene 80.4 51 0.0011 30.8 13.8 92 303-412 151-244 (466)
79 PRK11028 6-phosphogluconolacto 80.3 26 0.00056 34.9 12.0 27 312-338 179-206 (330)
80 KOG1539 WD repeat protein [Gen 80.0 8.5 0.00018 44.4 9.1 52 78-132 246-301 (910)
81 PRK11028 6-phosphogluconolacto 80.0 40 0.00086 33.6 13.2 28 311-338 83-111 (330)
82 KOG0295 WD40 repeat-containing 79.7 10 0.00022 40.2 8.9 108 302-410 103-235 (406)
83 KOG0275 Conserved WD40 repeat- 78.7 4.6 0.0001 42.3 6.1 84 308-410 307-390 (508)
84 PRK01742 tolB translocation pr 78.2 8 0.00017 40.7 8.0 76 311-408 336-413 (429)
85 KOG0279 G protein beta subunit 77.8 15 0.00032 37.9 9.2 83 307-408 148-232 (315)
86 PRK04922 tolB translocation pr 77.5 25 0.00054 37.0 11.4 36 310-345 294-332 (433)
87 KOG2321 WD40 repeat protein [G 76.4 16 0.00036 40.8 9.7 108 15-130 154-282 (703)
88 PRK01742 tolB translocation pr 76.1 25 0.00054 37.0 11.0 39 309-347 249-290 (429)
89 KOG0264 Nucleosome remodeling 74.6 13 0.00027 40.1 8.1 72 307-398 272-347 (422)
90 PF02897 Peptidase_S9_N: Proly 74.5 37 0.00081 35.1 11.6 49 308-356 124-178 (414)
91 PRK04792 tolB translocation pr 74.5 30 0.00065 36.9 11.1 45 311-355 265-313 (448)
92 KOG1063 RNA polymerase II elon 74.4 17 0.00037 41.3 9.4 57 75-131 663-735 (764)
93 KOG0280 Uncharacterized conser 74.1 19 0.00042 37.3 9.0 77 309-403 123-202 (339)
94 PF03178 CPSF_A: CPSF A subuni 74.0 19 0.00042 36.1 9.1 51 75-126 22-95 (321)
95 PRK02889 tolB translocation pr 73.9 33 0.00071 36.2 11.2 40 308-347 240-282 (427)
96 KOG0306 WD40-repeat-containing 72.5 18 0.00038 41.6 9.0 115 33-156 24-147 (888)
97 PRK02889 tolB translocation pr 71.8 64 0.0014 34.0 12.7 40 305-344 193-235 (427)
98 KOG1408 WD40 repeat protein [F 71.7 5.4 0.00012 45.5 4.8 141 228-399 391-535 (1080)
99 PF00780 CNH: CNH domain; Int 71.4 32 0.00069 33.2 9.7 68 38-111 102-169 (275)
100 KOG0285 Pleiotropic regulator 70.6 30 0.00065 36.9 9.6 83 310-411 238-320 (460)
101 KOG0293 WD40 repeat-containing 70.4 19 0.0004 39.0 8.2 264 15-409 214-481 (519)
102 KOG0305 Anaphase promoting com 70.3 31 0.00067 37.9 10.1 98 303-417 297-396 (484)
103 PF14779 BBS1: Ciliary BBSome 70.3 9.3 0.0002 38.6 5.8 53 77-129 177-234 (257)
104 smart00320 WD40 WD40 repeats. 69.7 8.8 0.00019 23.0 3.7 33 303-335 8-40 (40)
105 PRK00178 tolB translocation pr 69.7 1E+02 0.0023 32.0 13.7 42 303-344 194-238 (430)
106 PRK00178 tolB translocation pr 69.3 68 0.0015 33.4 12.2 38 310-347 245-285 (430)
107 KOG0639 Transducin-like enhanc 69.1 10 0.00022 41.8 6.1 49 79-129 595-643 (705)
108 KOG1034 Transcriptional repres 68.9 13 0.00028 39.0 6.5 75 319-411 105-179 (385)
109 KOG0306 WD40-repeat-containing 68.8 18 0.00039 41.5 8.1 92 299-409 99-190 (888)
110 KOG0296 Angio-associated migra 68.8 4.9 0.00011 42.4 3.5 54 76-129 283-337 (399)
111 KOG3914 WD repeat protein WDR4 68.6 12 0.00026 39.8 6.3 80 311-410 155-235 (390)
112 KOG0294 WD40 repeat-containing 68.6 38 0.00083 35.5 9.8 96 300-415 76-174 (362)
113 KOG0265 U5 snRNP-specific prot 68.2 44 0.00095 34.8 10.0 92 302-412 42-134 (338)
114 KOG2048 WD40 repeat protein [G 68.1 22 0.00048 40.2 8.5 86 307-410 154-245 (691)
115 KOG1446 Histone H3 (Lys4) meth 67.9 10 0.00022 39.2 5.5 39 311-349 236-274 (311)
116 KOG0272 U4/U6 small nuclear ri 67.3 17 0.00038 39.1 7.2 90 303-410 341-430 (459)
117 KOG0294 WD40 repeat-containing 65.7 46 0.00099 34.9 9.6 50 82-131 211-261 (362)
118 KOG1538 Uncharacterized conser 65.5 17 0.00037 41.4 7.0 40 309-350 14-54 (1081)
119 KOG0646 WD40 repeat protein [G 65.5 12 0.00026 40.6 5.6 69 309-397 83-152 (476)
120 KOG2110 Uncharacterized conser 65.3 66 0.0014 34.3 10.9 82 310-410 132-216 (391)
121 KOG1273 WD40 repeat protein [G 65.1 60 0.0013 34.2 10.4 41 303-343 61-101 (405)
122 PF10282 Lactonase: Lactonase, 64.6 1.7E+02 0.0037 29.8 14.6 129 306-450 85-221 (345)
123 KOG0281 Beta-TrCP (transducin 64.5 5.3 0.00011 42.2 2.8 77 301-400 354-430 (499)
124 PF10282 Lactonase: Lactonase, 64.4 1.6E+02 0.0034 30.1 13.5 27 311-337 195-222 (345)
125 KOG1517 Guanine nucleotide bin 63.7 48 0.001 39.8 10.3 57 75-132 1207-1269(1387)
126 PRK05137 tolB translocation pr 61.6 1.2E+02 0.0026 31.9 12.3 39 309-347 291-332 (435)
127 KOG0267 Microtubule severing p 61.5 14 0.00031 42.1 5.6 81 303-402 150-230 (825)
128 KOG0278 Serine/threonine kinas 61.3 61 0.0013 33.3 9.4 87 34-129 189-277 (334)
129 KOG4497 Uncharacterized conser 60.6 24 0.00052 37.3 6.6 116 313-449 14-151 (447)
130 PRK04792 tolB translocation pr 59.5 1.5E+02 0.0032 31.6 12.8 42 303-344 213-257 (448)
131 PF06977 SdiA-regulated: SdiA- 59.2 19 0.0004 36.0 5.5 48 302-350 16-66 (248)
132 PF10168 Nup88: Nuclear pore c 58.3 34 0.00073 39.3 8.0 75 33-107 88-178 (717)
133 PF12894 Apc4_WD40: Anaphase-p 58.3 24 0.00053 26.4 4.7 30 310-340 14-43 (47)
134 KOG0308 Conserved WD40 repeat- 58.2 32 0.00069 39.0 7.4 98 298-410 108-213 (735)
135 KOG0771 Prolactin regulatory e 57.9 17 0.00037 38.8 5.1 48 308-358 282-329 (398)
136 KOG0301 Phospholipase A2-activ 57.7 85 0.0018 36.0 10.6 100 302-424 174-277 (745)
137 TIGR02276 beta_rpt_yvtn 40-res 56.1 31 0.00067 23.6 4.7 29 317-345 1-30 (42)
138 KOG0313 Microtubule binding pr 55.9 71 0.0015 34.3 9.2 81 309-407 302-386 (423)
139 KOG0274 Cdc4 and related F-box 55.7 33 0.00071 38.1 7.1 84 306-411 330-414 (537)
140 PRK03629 tolB translocation pr 55.6 72 0.0016 33.8 9.5 47 309-355 332-381 (429)
141 TIGR03300 assembly_YfgL outer 55.5 1.2E+02 0.0026 30.9 10.8 98 318-448 278-376 (377)
142 COG2706 3-carboxymuconate cycl 55.4 2.1E+02 0.0046 30.3 12.5 114 309-448 146-283 (346)
143 KOG0293 WD40 repeat-containing 55.3 37 0.00081 36.8 7.1 50 308-357 270-322 (519)
144 PF00400 WD40: WD domain, G-be 54.2 23 0.0005 23.7 3.8 29 76-106 11-39 (39)
145 PRK05137 tolB translocation pr 54.0 1.8E+02 0.0039 30.6 12.2 42 303-344 197-241 (435)
146 COG3386 Gluconolactonase [Carb 53.8 1.9E+02 0.0041 29.8 11.9 126 307-449 162-296 (307)
147 KOG0264 Nucleosome remodeling 53.5 50 0.0011 35.7 7.8 41 299-339 308-349 (422)
148 PRK04922 tolB translocation pr 52.9 86 0.0019 33.0 9.5 46 310-355 338-386 (433)
149 COG4946 Uncharacterized protei 52.9 19 0.00042 39.5 4.6 37 308-344 402-438 (668)
150 PRK11138 outer membrane biogen 52.5 1.7E+02 0.0036 30.3 11.5 98 320-450 295-393 (394)
151 KOG0315 G-protein beta subunit 52.5 28 0.00061 35.5 5.4 54 303-356 254-307 (311)
152 TIGR03300 assembly_YfgL outer 52.5 1.9E+02 0.0041 29.4 11.7 71 319-410 105-175 (377)
153 TIGR02800 propeller_TolB tol-p 51.6 1.8E+02 0.0039 29.7 11.4 43 302-344 184-229 (417)
154 KOG1517 Guanine nucleotide bin 51.3 64 0.0014 38.8 8.7 115 318-448 1220-1377(1387)
155 TIGR02800 propeller_TolB tol-p 51.2 1.8E+02 0.0039 29.7 11.4 37 311-347 237-276 (417)
156 KOG0275 Conserved WD40 repeat- 51.1 19 0.00042 37.9 4.1 91 306-407 212-302 (508)
157 KOG1963 WD40 repeat protein [G 50.9 15 0.00033 42.3 3.6 77 310-401 208-284 (792)
158 PRK01029 tolB translocation pr 50.2 96 0.0021 33.0 9.4 46 303-348 322-370 (428)
159 KOG1407 WD40 repeat protein [F 50.0 45 0.00099 34.2 6.5 88 303-410 16-107 (313)
160 KOG0305 Anaphase promoting com 49.8 99 0.0021 34.1 9.5 79 307-405 217-295 (484)
161 KOG0269 WD40 repeat-containing 48.1 18 0.00039 41.6 3.7 70 319-407 100-173 (839)
162 COG2319 FOG: WD40 repeat [Gene 47.5 2.4E+02 0.0052 26.3 11.4 92 303-409 61-154 (466)
163 KOG0277 Peroxisomal targeting 47.4 74 0.0016 32.7 7.5 78 304-397 5-90 (311)
164 PF04841 Vps16_N: Vps16, N-ter 47.3 62 0.0014 34.3 7.4 97 306-418 215-314 (410)
165 PF10313 DUF2415: Uncharacteri 47.2 57 0.0012 24.4 5.0 30 311-340 4-36 (43)
166 KOG4283 Transcription-coupled 46.3 1.3E+02 0.0028 31.7 9.1 92 309-409 45-143 (397)
167 KOG0771 Prolactin regulatory e 46.3 1.3E+02 0.0029 32.3 9.4 108 19-132 221-337 (398)
168 KOG0274 Cdc4 and related F-box 46.1 2E+02 0.0044 32.0 11.4 87 303-410 245-331 (537)
169 KOG0641 WD40 repeat protein [G 46.0 34 0.00074 34.5 4.8 44 303-346 224-270 (350)
170 KOG2096 WD40 repeat protein [G 45.2 32 0.00068 36.3 4.6 67 32-106 334-400 (420)
171 PRK04043 tolB translocation pr 44.8 4.2E+02 0.009 28.3 13.4 39 310-348 235-276 (419)
172 PF01403 Sema: Sema domain; I 43.5 95 0.002 32.9 8.1 53 77-129 364-431 (433)
173 KOG0647 mRNA export protein (c 43.5 2E+02 0.0044 30.2 10.0 82 310-412 75-159 (347)
174 PLN02919 haloacid dehalogenase 43.5 2.6E+02 0.0056 33.7 12.4 36 310-345 742-778 (1057)
175 KOG3881 Uncharacterized conser 42.6 45 0.00097 35.7 5.3 49 77-133 203-251 (412)
176 PF11768 DUF3312: Protein of u 42.0 1.2E+02 0.0026 33.9 8.7 74 308-402 260-333 (545)
177 KOG2055 WD40 repeat protein [G 41.8 5.3E+02 0.011 28.6 16.2 88 299-409 297-385 (514)
178 KOG0273 Beta-transducin family 41.5 1.6E+02 0.0034 32.6 9.3 113 18-131 316-464 (524)
179 PF04841 Vps16_N: Vps16, N-ter 41.3 3.1E+02 0.0068 29.1 11.6 72 29-111 29-112 (410)
180 PF14781 BBS2_N: Ciliary BBSom 41.3 1.1E+02 0.0024 28.3 7.1 73 76-159 47-124 (136)
181 KOG0299 U3 snoRNP-associated p 40.4 1.1E+02 0.0024 33.5 7.9 100 302-411 137-245 (479)
182 KOG0310 Conserved WD40 repeat- 39.8 2.7E+02 0.0059 30.7 10.7 64 79-152 238-303 (487)
183 KOG0289 mRNA splicing factor [ 38.7 3.9E+02 0.0086 29.4 11.6 83 309-410 349-431 (506)
184 KOG2096 WD40 repeat protein [G 38.3 1.4E+02 0.0031 31.6 8.1 85 301-410 80-164 (420)
185 KOG0646 WD40 repeat protein [G 38.2 24 0.00052 38.4 2.6 204 88-346 91-316 (476)
186 KOG0302 Ribosome Assembly prot 37.6 1.4E+02 0.0029 32.3 7.9 86 306-411 256-348 (440)
187 KOG0300 WD40 repeat-containing 36.7 4.1E+02 0.0088 28.4 11.0 92 298-409 305-398 (481)
188 KOG1645 RING-finger-containing 36.2 78 0.0017 34.3 5.9 78 302-399 188-267 (463)
189 KOG0321 WD40 repeat-containing 35.7 1.2E+02 0.0026 34.6 7.5 123 306-449 143-299 (720)
190 PF04762 IKI3: IKI3 family; I 35.2 4.9E+02 0.011 31.1 12.8 165 4-212 240-434 (928)
191 KOG1408 WD40 repeat protein [F 35.2 1.1E+02 0.0023 35.6 7.1 72 309-399 643-714 (1080)
192 KOG2445 Nuclear pore complex c 34.1 1.6E+02 0.0036 31.0 7.7 34 76-110 223-258 (361)
193 KOG1538 Uncharacterized conser 32.9 2.1E+02 0.0045 33.3 8.7 47 310-358 459-505 (1081)
194 COG3041 Uncharacterized protei 32.7 14 0.00031 31.8 -0.0 10 344-353 53-62 (91)
195 PF13464 DUF4115: Domain of un 32.5 1.3E+02 0.0028 24.2 5.5 55 96-160 5-60 (77)
196 PF00780 CNH: CNH domain; Int 31.8 1E+02 0.0023 29.7 5.8 60 91-160 8-67 (275)
197 KOG1036 Mitotic spindle checkp 31.8 1.6E+02 0.0034 30.9 7.1 56 70-127 7-62 (323)
198 KOG0640 mRNA cleavage stimulat 31.6 2.7E+02 0.0058 29.6 8.8 112 310-449 264-381 (430)
199 PRK04043 tolB translocation pr 31.3 6.7E+02 0.015 26.7 13.6 38 309-346 189-230 (419)
200 COG2706 3-carboxymuconate cycl 31.1 5.5E+02 0.012 27.3 11.0 28 312-339 195-223 (346)
201 KOG4283 Transcription-coupled 31.0 1.8E+02 0.0038 30.7 7.3 72 311-400 147-221 (397)
202 KOG4190 Uncharacterized conser 31.0 32 0.00069 38.6 2.2 51 310-363 879-929 (1034)
203 KOG2695 WD40 repeat protein [G 30.9 1.1E+02 0.0024 32.7 6.0 75 316-407 308-385 (425)
204 PF06200 tify: tify domain; I 30.8 86 0.0019 22.6 3.7 23 138-160 3-25 (36)
205 KOG1334 WD40 repeat protein [G 30.8 38 0.00082 37.3 2.7 71 315-404 402-472 (559)
206 KOG2114 Vacuolar assembly/sort 30.6 1.1E+02 0.0024 36.0 6.3 55 77-132 125-184 (933)
207 KOG0292 Vesicle coat complex C 29.9 2.2E+02 0.0048 34.0 8.5 89 302-409 46-134 (1202)
208 PLN03215 ascorbic acid mannose 29.7 7.2E+02 0.016 26.6 12.8 31 305-337 197-227 (373)
209 KOG1009 Chromatin assembly com 28.8 2.5E+02 0.0054 30.5 8.2 104 300-409 58-164 (434)
210 PF07433 DUF1513: Protein of u 28.2 1.1E+02 0.0023 31.9 5.3 39 307-345 216-255 (305)
211 KOG0288 WD40 repeat protein Ti 26.4 1E+02 0.0023 33.4 4.9 98 301-417 213-310 (459)
212 KOG2110 Uncharacterized conser 26.4 1.5E+02 0.0032 31.8 5.9 59 301-359 167-227 (391)
213 KOG1188 WD40 repeat protein [G 26.1 64 0.0014 34.2 3.3 39 91-129 41-80 (376)
214 KOG0267 Microtubule severing p 26.1 73 0.0016 36.7 3.9 50 302-351 65-114 (825)
215 PF12234 Rav1p_C: RAVE protein 25.1 7.7E+02 0.017 28.3 11.7 93 33-131 33-127 (631)
216 KOG0276 Vesicle coat complex C 24.6 3.6E+02 0.0079 31.0 8.8 93 308-419 14-109 (794)
217 KOG1036 Mitotic spindle checkp 24.5 2E+02 0.0043 30.2 6.4 70 50-126 26-101 (323)
218 KOG1523 Actin-related protein 24.4 2.3E+02 0.005 30.0 6.8 83 24-116 204-288 (361)
219 TIGR03054 photo_alph_chp1 puta 23.8 2.2E+02 0.0049 26.2 6.0 71 381-451 42-123 (135)
220 COG3391 Uncharacterized conser 23.7 1.6E+02 0.0034 30.8 5.8 45 311-355 163-214 (381)
221 smart00564 PQQ beta-propeller 23.5 1.4E+02 0.003 19.4 3.5 23 92-114 8-31 (33)
222 KOG0650 WD40 repeat nucleolar 23.5 1.5E+02 0.0032 33.8 5.6 44 303-346 396-439 (733)
223 KOG3881 Uncharacterized conser 23.3 2.5E+02 0.0054 30.3 7.0 93 309-420 249-344 (412)
224 PF13360 PQQ_2: PQQ-like domai 23.2 4.8E+02 0.01 24.0 8.4 85 55-155 6-92 (238)
225 KOG0283 WD40 repeat-containing 23.2 2.2E+02 0.0047 33.0 6.9 78 308-402 502-580 (712)
226 PF11396 DUF2874: Protein of u 23.1 3.3E+02 0.0071 20.4 6.1 38 75-112 21-61 (61)
227 PF14783 BBS2_Mid: Ciliary BBS 22.8 2.7E+02 0.0059 24.8 6.2 46 79-126 2-49 (111)
228 KOG2114 Vacuolar assembly/sort 22.8 1.4E+02 0.0031 35.1 5.4 46 313-359 29-74 (933)
229 PF11768 DUF3312: Protein of u 22.8 2.7E+02 0.0058 31.3 7.4 34 88-121 309-342 (545)
230 KOG0284 Polyadenylation factor 22.5 1E+02 0.0022 33.4 4.0 80 302-400 133-212 (464)
231 TIGR01643 YD_repeat_2x YD repe 22.3 2.2E+02 0.0048 19.7 4.6 32 302-333 9-40 (42)
232 PF14408 Actino_peptide: Ribos 22.2 99 0.0022 24.7 3.0 22 312-333 5-26 (59)
233 KOG1912 WD40 repeat protein [G 22.1 69 0.0015 37.4 2.8 39 91-129 438-477 (1062)
234 PF01436 NHL: NHL repeat; Int 22.0 1.6E+02 0.0034 19.3 3.5 19 324-342 8-26 (28)
235 KOG0641 WD40 repeat protein [G 22.0 8.6E+02 0.019 24.9 11.0 80 326-425 160-256 (350)
236 PF10411 DsbC_N: Disulfide bon 21.8 1.9E+02 0.0041 22.3 4.4 37 76-114 11-47 (57)
237 KOG0647 mRNA export protein (c 21.5 1.3E+02 0.0029 31.5 4.4 55 71-126 22-79 (347)
238 KOG1064 RAVE (regulator of V-A 21.3 68 0.0015 40.7 2.7 70 309-407 2338-2407(2439)
239 KOG2394 WD40 protein DMR-N9 [G 21.3 2.2E+02 0.0048 32.0 6.3 78 309-406 292-369 (636)
240 KOG2111 Uncharacterized conser 21.1 7.3E+02 0.016 26.3 9.7 56 303-358 177-234 (346)
241 KOG0643 Translation initiation 20.7 1.4E+02 0.003 30.9 4.4 51 75-127 146-198 (327)
242 PF13360 PQQ_2: PQQ-like domai 20.4 1.4E+02 0.003 27.6 4.1 45 63-115 56-102 (238)
243 PF02393 US22: US22 like; Int 20.3 1.6E+02 0.0036 25.2 4.3 28 317-344 79-106 (125)
244 PF07893 DUF1668: Protein of u 20.2 1.8E+02 0.0039 30.2 5.3 38 305-344 64-101 (342)
No 1
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=100.00 E-value=3.8e-105 Score=827.11 Aligned_cols=375 Identities=34% Similarity=0.531 Sum_probs=323.1
Q ss_pred cccCCCeeeeccCcceeeeeecceEEE--EeecCCC---C---CceeEeecCCCCCCCcEEEEEEEEe---------CCc
Q 012917 28 WLVNDPNLLCALDMHTIALANRYQTVI--INWADPE---G---LVAKIRPELSPIASEYITAIEWLVF---------EEM 90 (453)
Q Consensus 28 wl~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~---~---~~~~~~g~l~~~~~e~ITs~~~lp~---------~dw 90 (453)
|||| |++++||+||+||||+++|+|| .+|++.+ + +.+.|+|+|+.+++|+|||++|||| +||
T Consensus 1 WL~~-~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw 79 (415)
T PF14655_consen 1 WLQD-CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW 79 (415)
T ss_pred Cccc-ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence 9999 9999999999999999999999 5895533 2 3389999999977899999999999 899
Q ss_pred EEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc
Q 012917 91 RALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS 170 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~ 170 (453)
+||||||++||||||||+|+|||+|+||++||++||||+++++..++...|||+|+||++||+|||++|+++|++|++|+
T Consensus 80 ~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~~~L~~~~~~~ 159 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLFSVLRACRNQV 159 (415)
T ss_pred EEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEECCEEEEEecHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999866666666999999999999999999999999999999
Q ss_pred cccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhc--------------ccccceEEEEeC
Q 012917 171 NSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQ--------------SSQRYFCAVTIG 236 (453)
Q Consensus 171 ~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~--------------s~~~~~~~i~vG 236 (453)
+++.|+.+ + ...+++|+||||+|++++.|+|++++|+++|++||+. +.+.++++|++|
T Consensus 160 ~~~~~~~~-------~-~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G 231 (415)
T PF14655_consen 160 ARGAASGS-------D-SPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVG 231 (415)
T ss_pred hhhhhccc-------c-cCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEec
Confidence 99865321 2 2347889999999999999999999999999999974 345778999999
Q ss_pred CCceeEEEEeccCCCcchhhhhhhhhhh-HHHHHHhhhhh--ccccCCCCCC-CC-----CCCCCccccCCCCccccCCC
Q 012917 237 EDSVISAFRLSEDRSRSLVGAILSKVVP-ATFSTISSLSK--MIWRSEQSPK-KS-----EPKPQSFARASPLTCLKDHP 307 (453)
Q Consensus 237 ~~P~la~y~~~e~~~~s~~~a~~S~va~-av~S~~~s~ak--~~W~~~~~~~-~~-----e~~p~~~~~a~pl~~l~D~~ 307 (453)
++||+|||+++|+.+++ ++++|+. +|+|+++++++ ++|+.+++++ ++ ++++++.++..+..+|+|.+
T Consensus 232 ~~P~v~f~~~~e~~s~~----~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~ 307 (415)
T PF14655_consen 232 SSPFVSFYYASEGSSQP----LLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSK 307 (415)
T ss_pred CCceEEEEEccCCCCcc----cHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCC
Confidence 99999999999887775 5777777 88888888766 3333333221 11 22333333344456899999
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
|++++|++||+++|||+||+||||+|+|+++++|||||||||||||+|+++.++.+...+..+....+.+.+||||||||
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999998876533333444455577999999999
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCeEEe
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKGSKIL 415 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll 415 (453)
|||+||||+||+||||+||+|+|+||||
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v~k~~rLl 415 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNVGKGCRLL 415 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEeCCCcEEC
Confidence 9999999999999999999999999996
No 2
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-102 Score=839.32 Aligned_cols=426 Identities=44% Similarity=0.645 Sum_probs=370.1
Q ss_pred CCCCcccceeeeeeecccccccCCCCCcccCCCeeeeccCcceeeeeecceEEE--EeecCCCCC---ceeEeecCCCCC
Q 012917 1 MSKRTHTTEVGSIACTDLSDLGAGKEGWLVNDPNLLCALDMHTIALANRYQTVI--INWADPEGL---VAKIRPELSPIA 75 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~wl~~~~~~~~sp~~~~la~A~~~~~v~--~~w~~~~~~---~~~~~g~l~~~~ 75 (453)
|.+|.|.+|.||+.|+|+.+.|+++ ||++ |+++++|++|++++|+++|||| .+|++++++ .|.|+|+|++++
T Consensus 1 ~w~~w~~~e~g~~e~ee~t~lg~~~--WL~~-cnl~l~s~~d~~~~A~e~rfvfL~~~Wk~pd~p~~~~Vgw~g~l~dpe 77 (1244)
T KOG2727|consen 1 MWKRWHLTELGCIECEELTELGAGK--WLLV-CNLNLLSALDSHSLALENRFVFLIVNWKDPDAPVYKRVGWRGDLSDPE 77 (1244)
T ss_pred CcccccccccCchhhhhhhcccccc--hHHh-cCcccCcchHHHHHHhhcceEEEEecCCCCCCCceEEEEeccccCCcc
Confidence 7789999999999999999999988 9999 9999999999999999999999 689999977 499999999988
Q ss_pred CCcEEEEEEEEe--------CCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEe
Q 012917 76 SEYITAIEWLVF--------EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVM 147 (453)
Q Consensus 76 ~e~ITs~~~lp~--------~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily 147 (453)
+|+|||++|+|| +|||||||||++|||+||||+|.|||+|.+|++||++||||+++. +++++|+|
T Consensus 78 ~e~ITa~~clpl~n~s~dgr~dwtcVavGt~sGyV~FYTe~Gvllf~Q~~~edPVl~lk~r~~k~-------d~~l~i~y 150 (1244)
T KOG2727|consen 78 AESITAIECLPLDNVSHDGRVDWTCVAVGTSSGYVLFYTETGVLLFKQIVHEDPVLKLKVRGTKK-------DLMLEISY 150 (1244)
T ss_pred cceeeeeeeeeccccccccccceeEEEEecccceEEEEecccHHHHHHHhccCccceEEEEEeec-------CcEEEEee
Confidence 999999999999 799999999999999999999999999999999999999999976 88999999
Q ss_pred CCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceeccc-CCCC-ceeeEEEeCcCCCCchhh--
Q 012917 148 PGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNV-SKYG-PCADAAITGLMPPPLMEV-- 223 (453)
Q Consensus 148 p~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l-~~~~-~i~Daa~~G~~~p~~~d~-- 223 (453)
|.++|+|+|++|++.|+||+++++++. ..+ +.....++++||||.+ ++.. .|.|+++-+...||++|+
T Consensus 151 p~~~~~I~g~sl~~~L~ncq~~Vqkaa------~Ek--nsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~v 222 (1244)
T KOG2727|consen 151 PEICIVIPGVSLRFDLSNCQSMVQKAA------QEK--NSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTV 222 (1244)
T ss_pred cceEEEECCchhhhhHHHHHHHHHHHH------Hhc--cCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhh
Confidence 999999999999999999999999873 111 1122457799999999 5444 555555555577888988
Q ss_pred -c------------ccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHHhhhhhccccCCC---CCCCC
Q 012917 224 -Q------------SSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ---SPKKS 287 (453)
Q Consensus 224 -~------------s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~---~~~~~ 287 (453)
+ |-.+|++++++|++||++||+++|+.+++++++++.+|++++.+-+.|... +|.+++ +..++
T Consensus 223 tas~~~gy~a~~k~SpPrySq~vt~ge~pf~gFf~a~eg~~~~llg~Vak~v~s~A~sn~asg~f-gi~~ep~~sp~~kp 301 (1244)
T KOG2727|consen 223 TASMPPGYLALQKPSPPRYSQAVTIGEDPFIGFFRASEGRGRSLLGAVAKKVVSAAASNIASGSF-GIWREPDQSPKRKP 301 (1244)
T ss_pred hcccCchhhhhccCCCcceeeeEEecCCceeeeeeeccccccccHHHHHHHhhhhhhhhhhhhee-eccCCCCcChhhcC
Confidence 2 234888999999999999999999999987777777777766554444333 443333 34566
Q ss_pred CCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccccccc
Q 012917 288 EPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS 367 (453)
Q Consensus 288 e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~ 367 (453)
+||+++..+++.+.+|+|.+|+|++|++||+|+|||+||++|||+|+|+++++|||||||||||||+|+++.+...+
T Consensus 302 ~pk~~saapa~~R~~i~D~~R~ge~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~--- 378 (1244)
T KOG2727|consen 302 EPKTQSAAPASSRTCIKDYPRKGEKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGK--- 378 (1244)
T ss_pred CCCCCcccccceeeccccCccccceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCC---
Confidence 77888766666678899999999999999999999999999999999999999999999999999999998776543
Q ss_pred ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCC--CcC---cEEEEEeCCC
Q 012917 368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSP--YVP---LEVFLLNGDS 442 (453)
Q Consensus 368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~--~~~---~~~~lld~~~ 442 (453)
.++.++++|+||||||||||+||||+||+||||+||||+|+++|+||+|+++|.+.+++ .+| +.|+|+|| +
T Consensus 379 ---s~~~~sRvAlFLvIyAPRrgiLEVW~~q~gpRV~AfnV~Ks~~Llypny~~gG~nnsssqs~~plt~~~clf~Dp-~ 454 (1244)
T KOG2727|consen 379 ---SEPVKSRVALFLVIYAPRRGILEVWQMQTGPRVLAFNVAKSSKLLYPNYRFGGNNNSSSQSCHPLTVFLCLFGDP-K 454 (1244)
T ss_pred ---CccCcCceeEEEEEecccccHHHHHHhccCCeEEEEecCCccccccCcceecCCCCcCccccchhhhhhhhccCC-C
Confidence 35677889999999999999999999999999999999999999999999999776443 333 88999999 8
Q ss_pred CceEEEeccC
Q 012917 443 GQLSVLNRSL 452 (453)
Q Consensus 443 g~l~~i~~~~ 452 (453)
|++|+||+.+
T Consensus 455 Gsvk~In~PF 464 (1244)
T KOG2727|consen 455 GSVKMINRPF 464 (1244)
T ss_pred CceEEeccce
Confidence 9999999853
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.87 E-value=0.019 Score=51.87 Aligned_cols=84 Identities=24% Similarity=0.334 Sum_probs=61.1
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
.....+..+..+|+++.++++...|.|.++|+..+..++.+++..+ .+....-.+ +. .+++
T Consensus 175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~--~~~~ 235 (289)
T cd00200 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GVNSVAFSP-------------DG--YLLA 235 (289)
T ss_pred cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----ceEEEEEcC-------------CC--cEEE
Confidence 3344677899999998888877799999999999999999987665 222211111 11 2455
Q ss_pred EcCCCCeEEEeecCCCCeEEEEE
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~ 407 (453)
.+...|.|.+|+++++..+..+.
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEcc
Confidence 56679999999999887777666
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.80 E-value=0.00023 Score=75.41 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=46.2
Q ss_pred cCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917 296 RASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 296 ~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG 347 (453)
...|++.|.+++--.-++.-||+|+|.|.-+..|+|.++++.++.+++-.+|
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 3456778999999999999999999999999999999999999998876654
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.042 Score=57.76 Aligned_cols=92 Identities=16% Similarity=0.304 Sum_probs=73.8
Q ss_pred cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEE
Q 012917 304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.-++....++..|||++|+|.+.-.--|=|+|-.+|.-+-.++|+=+| ||+|.. | .+
T Consensus 364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-----D--------------sR-- 422 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-----D--------------SR-- 422 (480)
T ss_pred hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-----C--------------cc--
Confidence 344566789999999999999988899999999999999999999987 888873 2 12
Q ss_pred EEEEcCCCCeEEEeecCC----------CCeEEEEEecCCeEEec
Q 012917 382 LAIHAPRKGIIEVWQMRT----------GPRLLTIQCAKGSKILQ 416 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~----------G~RV~a~~v~~~~~Ll~ 416 (453)
|++...++-.|+||++++ ..-|+++.-.+.+..+-
T Consensus 423 LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 778999999999999985 44566666555554443
No 6
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.016 Score=61.56 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=78.5
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEc-CCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDT-QALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~-~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
+..+.+..+.+..++.+|++++++.+...+.|-++|+ ..+..+|..||+.+ ++-...=.+.
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p~-------------- 257 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSPD-------------- 257 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----ceEEEEecCC--------------
Confidence 3457889999999999999999999999999999999 77899999999999 6644322221
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
. -|++-+-.++.|.||++++|..+..+..+.+
T Consensus 258 g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 258 G-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred C-CEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 1 2789999999999999999999999887765
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.011 Score=62.79 Aligned_cols=86 Identities=30% Similarity=0.399 Sum_probs=68.5
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
.+..|..+.--..+++.+|.|++.+..+..|-|-++|+.++..+|++||+.+ .|....-.. +.
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----~is~~~f~~-------------d~ 300 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----GISGLAFSP-------------DG 300 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC----ceEEEEECC-------------CC
Confidence 3456888888889999999999999999999999999999999999999999 444322111 12
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeE
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRL 403 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV 403 (453)
. +|+ -+-.+|.|.||++.+|.+.
T Consensus 301 ~-~l~-s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 301 N-LLV-SASYDGTIRVWDLETGSKL 323 (456)
T ss_pred C-EEE-EcCCCccEEEEECCCCcee
Confidence 2 233 3366999999999999965
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.88 E-value=0.48 Score=53.62 Aligned_cols=305 Identities=15% Similarity=0.182 Sum_probs=155.5
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCC----CCc--eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPE----GLV--AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL 107 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~----~~~--~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte 107 (453)
.+..||+|..+|++.+..+-| |..++ ++| +--+-.+.. -+.||++.|. .|..++++|-.+=.+|+|..
T Consensus 101 ~i~fSPng~~fav~~gn~lqi--w~~P~~~~~~~~pFvl~r~~~g~--fddi~si~Ws--~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQI--WHAPGEIKNEFNPFVLHRTYLGH--FDDITSIDWS--DDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred eEEECCCCcEEEEEecceeEE--EecCcchhcccCcceEeeeecCC--ccceeEEEec--cCCceEEeccccceEEEEEe
Confidence 466799999999999998777 32222 233 222333322 3559999886 57799999999999999996
Q ss_pred CCcEe---eecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc-cccccCCCCccCC
Q 012917 108 KGDLV---HRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS-NSNFWDQKPKQRD 183 (453)
Q Consensus 108 ~G~LL---~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~-~~~~w~~~~~~~~ 183 (453)
++..= +--.=|.++|+.--+-. .+.+++.+..+..+..=..++.+.-+. +++. ..| ..+
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~---------~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~kd~eg-------~~d 237 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGA---------NSLDLYTVSKDGALFVWTCDLRPPELD-KAEKDEEG-------SDD 237 (893)
T ss_pred ccccccceEeccCCCcceEEEEecc---------CcceEEEEecCceEEEEEecCCCcccc-cccccccc-------ccc
Confidence 65432 22234677777644221 156788888887655555554422110 0000 000 001
Q ss_pred CccccC---ccCCccc---eecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCc-eeEEEEeccCCCcchh
Q 012917 184 SEDLEN---SYERLPH---QLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS-VISAFRLSEDRSRSLV 255 (453)
Q Consensus 184 ~~~~~~---~~~~L~y---kKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P-~la~y~~~e~~~~s~~ 255 (453)
.+..++ -..+.-| +|.-|. ....+.-++| +.-..++++|-+. .+..|.+-+ +.++
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f--------------H~~t~~lvvgFssG~f~LyelP~---f~li 300 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF--------------HKGTNLLVVGFSSGEFGLYELPD---FNLI 300 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeec--------------cCCceEEEEEecCCeeEEEecCC---ceEE
Confidence 111111 1122222 222232 2222222222 0011133333222 122222211 1100
Q ss_pred h-hhhhh--hhhHHHH-----------HHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCE
Q 012917 256 G-AILSK--VVPATFS-----------TISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSL 321 (453)
Q Consensus 256 ~-a~~S~--va~av~S-----------~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~l 321 (453)
- .-+|+ +..++++ ++.-+.-+-|.++.= -.|.|. +--...+++.||||++
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY----VlKQQg------------H~~~i~~l~YSpDgq~ 364 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY----VLKQQG------------HSDRITSLAYSPDGQL 364 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce----eeeccc------------cccceeeEEECCCCcE
Confidence 0 00000 0000000 000011123444320 012221 1123678999999999
Q ss_pred EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCC
Q 012917 322 AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 322 aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~ 401 (453)
.|+.-..|.|=++|++.|..+--+-=+-.+--+.--.. ....+.-+..+|.|..||+..++
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-------------------~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-------------------RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-------------------cCCEEEEeecCCeEEeeeecccc
Confidence 99999999999999999976655533333222211110 11356788899999999999999
Q ss_pred eEEEEEecCCeE
Q 012917 402 RLLTIQCAKGSK 413 (453)
Q Consensus 402 RV~a~~v~~~~~ 413 (453)
.--+|+.+...+
T Consensus 426 NfRTft~P~p~Q 437 (893)
T KOG0291|consen 426 NFRTFTSPEPIQ 437 (893)
T ss_pred eeeeecCCCcee
Confidence 888888665433
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.82 E-value=0.014 Score=52.76 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=60.4
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
....+..+..+|+++++++++..|.|.++|+.++..++.+++..+ .+....-.+ +.. .++.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~~--~l~~ 194 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG----EVNSVAFSP-------------DGE--KLLS 194 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc----ccceEEECC-------------CcC--EEEE
Confidence 344678899999999999998899999999999999999986654 221111111 011 2344
Q ss_pred cCCCCeEEEeecCCCCeEEEEEe
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v 408 (453)
+-.+|.|.+|+++.+..+..+..
T Consensus 195 ~~~~~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 195 SSSDGTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred ecCCCcEEEEECCCCceecchhh
Confidence 44599999999999888777753
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.75 E-value=0.2 Score=56.14 Aligned_cols=92 Identities=20% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCC
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
.+..|.-++|..-++.-||+.++.|++...+-|=++.+.+...+.-+.|++.| .+.|+. . ++
T Consensus 497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~----~-----------~~- 560 (775)
T KOG0319|consen 497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR----N-----------GK- 560 (775)
T ss_pred EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee----C-----------Cc-
Confidence 34579999999999999999999999999999999999999999999999997 455553 1 11
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
-.|.+.-+|+|++|++.++.++.+..++.+
T Consensus 561 -----qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 561 -----QLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred -----EEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 348999999999999999877776665543
No 11
>PTZ00421 coronin; Provisional
Probab=96.64 E-value=0.049 Score=59.07 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917 299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
++..|..+.+.+..|..+|++ .++|++...|.|.|+|+.++..++.++|+.+. |....-.. +
T Consensus 117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~----V~sla~sp-------------d 179 (493)
T PTZ00421 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ----ITSLEWNL-------------D 179 (493)
T ss_pred ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc----eEEEEEEC-------------C
Confidence 334566777889999999975 68888888999999999999999999998873 32211111 1
Q ss_pred ccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
. -+++.+..+|.|.||++++|..+..+..+.+
T Consensus 180 G--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 180 G--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred C--CEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 1 2557788999999999999999888876654
No 12
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=0.015 Score=58.04 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=71.0
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
++..+.++|...-+..+-..|-++-+|+.+|.+-|.+||+-| .+......+.+ -=+.-..-
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~---------------~qilsG~E 176 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNAN---------------GQILSGAE 176 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccC---------------cceeecCC
Confidence 567899999654344444788999999999999999999999 77665432211 12345667
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEEecc
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKGSKILQP 417 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~ 417 (453)
+|.+.||+++|++.|-++...|+-.+++|
T Consensus 177 DGtvRvWd~kt~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 177 DGTVRVWDTKTQKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CccEEEEeccccceeEEeccccChhhcCc
Confidence 99999999999999999999999888885
No 13
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.22 E-value=0.0065 Score=64.53 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceee
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV 354 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~ 354 (453)
++.+++.++++||+|+|+|..+-.-+|.++|..++.-+..|||+|++=.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee
Confidence 77789999999999999999998888899999999999999999996443
No 14
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.90 E-value=4.3 Score=46.17 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=60.7
Q ss_pred CeeeeccCcceeeeeecceEEEEeecCCCC--CceeEe-e--cCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWADPEG--LVAKIR-P--ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD- 106 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~--~~~~~~-g--~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt- 106 (453)
+.++.+|+|++||.|-...-|- -|+.... ...... + .+. ....|+++.|-|.. ...++.|-.+|.|++|+
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~-iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~-~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIK-IFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYI-KSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEE-EEECCcccccccccccceEEec--ccCceeeEEeccCC-CCEEEEEeCCCeEEEEEC
Confidence 4467789999988877665443 2432210 000000 0 111 13568899888763 44688888999999999
Q ss_pred cCCcEeeecccCccceeEEEEe
Q 012917 107 LKGDLVHRQLIHPGRILKLRVR 128 (453)
Q Consensus 107 e~G~LL~sQ~lh~~pV~~ik~r 128 (453)
++|.++..+.-|.++|..+.+.
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~ 584 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYS 584 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEc
Confidence 5688888777899999988864
No 15
>PTZ00420 coronin; Provisional
Probab=95.74 E-value=0.22 Score=55.08 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=75.6
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc---eeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
..+.+++.+|+|+++|++-..|.|.|+|+.++.+++.++|+... .+-|+..... + ...++..
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d--------------~~~IlTt 232 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-D--------------DNYILST 232 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-C--------------CCEEEEE
Confidence 35789999999999999888899999999999999999998763 4556543211 1 1112222
Q ss_pred EcCCC--CeEEEeecCC-CCeEEEEEecCCeEEeccccccCccC-CCCCCcCcEEEEEeCCCCceEEEecc
Q 012917 385 HAPRK--GIIEVWQMRT-GPRLLTIQCAKGSKILQPTYRFGSSM-ASSPYVPLEVFLLNGDSGQLSVLNRS 451 (453)
Q Consensus 385 yaprR--g~lEVW~~~~-G~RV~a~~v~~~~~Ll~~~~~~~g~~-~~~~~~~~~~~lld~~~g~l~~i~~~ 451 (453)
-.-+. +.|.||++++ +.-+..+....+.-.|.|.+-..... --.+-....|.+.+-.+|.++.+|.+
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence 22221 4799999996 44455555444322222222111000 00011234555555556666666643
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.59 E-value=0.039 Score=61.71 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
..+.|.=+++.+++++.||+|++.|..|..|+|++||+.+|..+...||+.+.= .=+...- +.
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti-~SlsFS~----------------dg 631 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTI-YSLSFSR----------------DG 631 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCce-eEEEEec----------------CC
Confidence 345578899999999999999999999999999999999999999999996632 2222211 11
Q ss_pred cEEEEEEcCCCCeEEEeecCC
Q 012917 379 CLCLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~ 399 (453)
-..+-+.-+..|.+||+..
T Consensus 632 --~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 --NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --CEEEecCCCCeEEEEEchh
Confidence 1345677799999999864
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.57 E-value=0.3 Score=55.56 Aligned_cols=299 Identities=18% Similarity=0.178 Sum_probs=148.3
Q ss_pred CcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCc-cceeEEEEeeccCCCCcCCCCCeEEEEeCCe-E--E
Q 012917 77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHP-GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-L--A 152 (453)
Q Consensus 77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~-~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i--~ 152 (453)
.+||+++=-|.-| |||||+-+|-|.+|...-+.++.-.=|+ .+|..+-+|+-.. .-+.+--+.+ + -
T Consensus 203 s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 203 SRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------PLLASGRSNGDMAFW 272 (910)
T ss_pred cceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------eeEEeccCCceEEEE
Confidence 6788887665544 8999999999999996644444444465 9999999998553 2244444422 3 3
Q ss_pred EEeChhHHHHHHHHH-HhccccccCCCCccCCCccccCccCCccceecccCCCCce--eeEEEeCcCCCCchhhcccccc
Q 012917 153 RFDGSEIQKMLQRWF-QDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPC--ADAAITGLMPPPLMEVQSSQRY 229 (453)
Q Consensus 153 ~idG~~L~~~L~~c~-~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i--~Daa~~G~~~p~~~d~~s~~~~ 229 (453)
-+|+-.|..++++.. ..+... .-..+.+=+-...+.=+.+.|.++..+-. -==.=-|...||.+=-.-+..-
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~-----~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGA-----TFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred EcCCCeeeeeeeccccCCcccc-----eecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 356666777776432 000000 00000000000012234567777633311 0000113333444322111222
Q ss_pred eEEEEeCCCceeEEEEec-cCCCcchhhhhhhhhhhHH--HHH-------HhhhhhccccCCC------C---CCCCC--
Q 012917 230 FCAVTIGEDSVISAFRLS-EDRSRSLVGAILSKVVPAT--FST-------ISSLSKMIWRSEQ------S---PKKSE-- 288 (453)
Q Consensus 230 ~~~i~vG~~P~la~y~~~-e~~~~s~~~a~~S~va~av--~S~-------~~s~ak~~W~~~~------~---~~~~e-- 288 (453)
+.++.+|.++.+=.|.+. |..++++..-...+-++.+ .++ +..|+ ..|.++. . .+.+.
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa-~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA-FENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee-cccchhhhhcceeEEecCcceEEE
Confidence 246777888755455322 2212211110011111111 000 00010 0111111 0 00000
Q ss_pred ----CCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccc
Q 012917 289 ----PKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDA 364 (453)
Q Consensus 289 ----~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~ 364 (453)
.+..-.....| .-+.-..-...++++|++|+++.+.-+-|-|-+++.+.|+...-+= |
T Consensus 427 W~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~---~-------------- 488 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG---D-------------- 488 (910)
T ss_pred EeccCcccccEEecC-ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc---c--------------
Confidence 00000000000 0011133678999999999999999999999999999998765541 0
Q ss_pred cccccccCCCC---CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 365 ATSSAYYAPVK---SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 365 ~~~~~~~~~~k---~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+..|.++.. .|..--++|-+...|+|.+|+...+--+..+.++-+
T Consensus 489 --~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~ 536 (910)
T KOG1539|consen 489 --SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS 536 (910)
T ss_pred --CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC
Confidence 001111110 011113789999999999999988887777776654
No 18
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=95.57 E-value=0.019 Score=38.73 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=20.5
Q ss_pred CCcEEEEEEEEeCCcEEEEEeccccEEEEEe
Q 012917 76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD 106 (453)
Q Consensus 76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt 106 (453)
+|.|+++. + ....|+|+||.+|||+||
T Consensus 1 gE~i~aia---~-g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 1 GEEIEAIA---A-GDSWVAVATSAGYLRIFS 27 (27)
T ss_pred CceEEEEE---c-cCCEEEEEeCCCeEEecC
Confidence 46676664 3 334799999999999997
No 19
>PTZ00421 coronin; Provisional
Probab=95.54 E-value=0.21 Score=54.28 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=59.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc---eeeEEEEEecccccccccccCCCCCCcc
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
+......+.+|+.+|+|+++|++...|.|-++|+.++..++.++|+..+ .|.|.. + ..
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-----~--------------~~ 224 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-----R--------------KD 224 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-----C--------------CC
Confidence 4445556889999999999999999999999999999999999988664 455542 0 01
Q ss_pred EEEEEE--cCCCCeEEEeecCCCCe
Q 012917 380 LCLAIH--APRKGIIEVWQMRTGPR 402 (453)
Q Consensus 380 l~LvIy--aprRg~lEVW~~~~G~R 402 (453)
+++..- .-.+|.|.+|++++..+
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCC
Confidence 122221 13478999999997653
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.50 E-value=0.18 Score=47.59 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=56.0
Q ss_pred eeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 310 GERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 310 ~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
...|..+|+++++.++ ...++|.++|+.++.+++... |.+--.+.| .+ + . . +|++=+.
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~-~----------g---~--~l~~~~~ 268 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF----TP-D----------E---K--YLLTTNG 268 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE----CC-C----------C---C--EEEEEcC
Confidence 4468899999875553 445799999999999987653 221111111 01 0 0 1 3444456
Q ss_pred CCCeEEEeecCCCCeEEEEEecCC
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
..|.|.||+++++..+..+.++++
T Consensus 269 ~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 269 VSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEcccc
Confidence 789999999999999999998765
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.42 E-value=0.053 Score=60.65 Aligned_cols=92 Identities=20% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
|++.|-.+--....+..-||..|.|+--+.-+|=+||+.+|..||++-|++. =|.+..-.+ .
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----~V~al~~Sp----------~---- 588 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----PVTALAFSP----------C---- 588 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC----ceEEEEEcC----------C----
Confidence 4455555556667899999999999998999999999999999999999877 333332211 1
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
..||+ -+--.|+|.||++.+|.+|..+.-+
T Consensus 589 Gr~La-Sg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 589 GRYLA-SGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred CceEe-ecccCCcEEEEEcCCCcchhhhhcc
Confidence 11443 5667999999999999999888755
No 22
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.17 E-value=0.1 Score=55.04 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917 298 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 298 ~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
+|+....-++--..+|+.||||+++|..--.|-|.|+|-.+| ++.|-.+|++- ||....=.+. |..|.
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K----~It~Lawep~-----hl~p~-- 216 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK----WITALAWEPL-----HLVPP-- 216 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc----ceeEEeeccc-----ccCCC--
Confidence 566777788888999999999999999999999999998776 57799999999 9987643321 11111
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
.+ ++-.+.++|.+.||++..|..+....-+
T Consensus 217 -~r--~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 217 -CR--RLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred -cc--ceecccCCCCEEEEEccCceEEEEeccC
Confidence 12 4567888999999999999988877644
No 23
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.36 Score=49.48 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=66.1
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-+-+.|.-||||++..++++-+-+.|+|.-+|.++.-+-+|+.+.--=+++.=..| . -+|+-.-
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd--------------s--~Fvl~gs 251 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD--------------S--KFVLSGS 251 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC--------------C--cEEEEec
Confidence 34577899999999999999999999999999999999999886611122111111 1 1456666
Q ss_pred CCCeEEEeecCCCCeEEEEEe
Q 012917 388 RKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v 408 (453)
-+|.|-||++.+|.+|+.++-
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecC
Confidence 789999999999999999984
No 24
>PTZ00420 coronin; Provisional
Probab=94.96 E-value=0.28 Score=54.35 Aligned_cols=92 Identities=10% Similarity=-0.061 Sum_probs=64.7
Q ss_pred ccccCCCCeeeEEEECCCCCE-EEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917 301 TCLKDHPRKGERLTLSPSGSL-AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~l-aa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
..|..+.+.+..|+.+|++.. +|++...|.|.|+|+.++..+..++.. ..+.-+... . +..
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsws---p-------------dG~ 180 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKWN---I-------------KGN 180 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEEC---C-------------CCC
Confidence 345666788999999998865 466677899999999999877766532 122111110 0 111
Q ss_pred EEEEEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917 380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
+++-+-+++.|.||++++|..+..+..+.+.
T Consensus 181 --lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 181 --LLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred --EEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 2344667899999999999999988877663
No 25
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.88 E-value=0.84 Score=43.07 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=53.3
Q ss_pred eEEEECCCCCEE-EEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 311 ERLTLSPSGSLA-AITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 311 ~~i~lsP~~~la-a~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
..+.++|+|+.+ ++....++|.++|+.++.+++.+....+. ..+... + + .. +|++-....
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~-~-~-------------g~--~l~~~~~~~ 94 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--ELFALH-P-N-------------GK--ILYIANEDD 94 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc--cEEEEC-C-C-------------CC--EEEEEcCCC
Confidence 468899999865 55567899999999999998877653331 122111 1 1 01 344555677
Q ss_pred CeEEEeecCCCCeEEEEE
Q 012917 390 GIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~ 407 (453)
+.|.+|+++++..+..+.
T Consensus 95 ~~l~~~d~~~~~~~~~~~ 112 (300)
T TIGR03866 95 NLVTVIDIETRKVLAEIP 112 (300)
T ss_pred CeEEEEECCCCeEEeEee
Confidence 899999999887776665
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.84 E-value=0.78 Score=48.16 Aligned_cols=145 Identities=19% Similarity=0.154 Sum_probs=92.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccc-------cc-------cc-
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD-------AA-------TS- 367 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~-------~~-------~~- 367 (453)
+.-++-.+..+.-|-+|.|.|+.|--|.|++++.+++...+..- |-=..+-|+.-..... .+ .+
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 55566668889999999999999999999999999999877654 4555666765543221 00 00
Q ss_pred ---ccccCCC------C--CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCcEEE
Q 012917 368 ---SAYYAPV------K--SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVF 436 (453)
Q Consensus 368 ---~~~~~~~------k--~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~ 436 (453)
+..+++. + .+.-..+.-|- +|+|.+|++.+|+-+..++-..+.-+-....+..|...-+.-..-++|
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 0000000 0 11222456666 999999999999998888855533333333322221111113357889
Q ss_pred EEeCCCCceEEEec
Q 012917 437 LLNGDSGQLSVLNR 450 (453)
Q Consensus 437 lld~~~g~l~~i~~ 450 (453)
+++..+|.+...|+
T Consensus 259 ~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNN 272 (399)
T ss_pred EEccccceEEEecC
Confidence 99988887776665
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.66 E-value=0.1 Score=55.28 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=70.4
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
.+..++.||+-..++.+-..|+|.++|.....-=|+..|+ +|-.....-. |.| -|+.-+.+
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-----gwdVksvdWH---------P~k-----gLiasgsk 242 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-----GWDVKSVDWH---------PTK-----GLIASGSK 242 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-----CCCcceeccC---------Ccc-----ceeEEccC
Confidence 4567899998777777777899999999988887777665 2322211111 112 48899999
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEE---eccccccCc
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKGSKI---LQPTYRFGS 423 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~~~L---l~~~~~~~g 423 (453)
+..|++||.|+|.++++.+.+|++.| ++++.+++-
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll 280 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL 280 (464)
T ss_pred CceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE
Confidence 99999999999999999999998654 344444443
No 28
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=93.55 E-value=0.34 Score=51.52 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCeeeEEEECCCCCEEEEE--cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 307 PRKGERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~t--DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
.+...+|+--|+|.||+.. |++||| +|+.+|.-|-..-|+=+.=. =+.. . ..-|.+.
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~gH~k~I~-~V~f---s---------------PNGy~lA 361 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAGHIKEIL-SVAF---S---------------PNGYHLA 361 (459)
T ss_pred ccccceeEecCCCceeeccCccchhhe--eecccCcEEEEeccccccee-eEeE---C---------------CCceEEe
Confidence 4567789999999999994 999996 89999999998888766211 1111 0 1227888
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEec------------CCeEEecccc
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQCA------------KGSKILQPTY 419 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~v~------------~~~~Ll~~~~ 419 (453)
-...++...||++|--.-++++..+ .|+.|+.++|
T Consensus 362 Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 8899999999999987777777644 3566666555
No 29
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=93.51 E-value=0.08 Score=57.35 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=56.9
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc-ceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
-.+..+++|||-+++-.+=+.|-|.++|+.+-.+||-+|||-| |.|-=| . .+ + .-.--.
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s--~d-G---------------tklWTG 569 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--S--KD-G---------------TKLWTG 569 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe--c--CC-C---------------ceeecC
Confidence 3456789999999888888889999999999999999999998 233211 1 11 0 011224
Q ss_pred CCCCeEEEeecCCCCeEE
Q 012917 387 PRKGIIEVWQMRTGPRLL 404 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~ 404 (453)
..++.|.-|++|+|..+.
T Consensus 570 GlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred CCccceeehhhhhhhhhh
Confidence 458899999999988764
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.44 E-value=0.73 Score=51.91 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
+...+.+++++|+.+|+|+.--.--.=++|+.++.++-+.+|+|.- -|-.-+... | -++--
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG--vw~V~Fs~~--------------d---q~laT 522 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG--VWCVSFSKN--------------D---QLLAT 522 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc--eEEEEeccc--------------c---ceeEe
Confidence 4467899999999999999866666667777799999999999982 133222222 2 25667
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCC----eEEeccccccCcc
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAKG----SKILQPTYRFGSS 424 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~~----~~Ll~~~~~~~g~ 424 (453)
+.-+..|+||.+.++.++-+|.-+.. +..+.++.++.++
T Consensus 523 ~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 523 CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence 77899999999999999999985554 2334445555554
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=92.69 E-value=0.36 Score=49.52 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=60.2
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCe
Q 012917 312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGI 391 (453)
Q Consensus 312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~ 391 (453)
.+.-.++++-+..+-..-||..+|.++|..+|=.||+-+ ++....+ .++.+.||.-+.-+|.
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~----~vNs~~p--------------~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS----FVNSLDP--------------SRRGPQLVCSGSDDGT 156 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeeehhccccc----eeeecCc--------------cccCCeEEEecCCCce
Confidence 345567777777777888999999999999999999998 7876543 2457799999999999
Q ss_pred EEEeecCCCCeE
Q 012917 392 IEVWQMRTGPRL 403 (453)
Q Consensus 392 lEVW~~~~G~RV 403 (453)
+.|||||....+
T Consensus 157 ~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 157 LKLWDIRKKEAI 168 (338)
T ss_pred EEEEeecccchh
Confidence 999999954433
No 32
>KOG4328 consensus WD40 protein [Function unknown]
Probab=92.58 E-value=12 Score=40.52 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=59.3
Q ss_pred CCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-------CCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEe
Q 012917 75 ASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-------KGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVM 147 (453)
Q Consensus 75 ~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-------~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ily 147 (453)
-.++||++.|.|-..-..|+||=..|.|-|..- .|..+| .-|-.||-.|+|.-.-. +.-++--|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~hs~~Vs~l~F~P~n~-------s~i~ssSy 255 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPHSGPVSGLKFSPANT-------SQIYSSSY 255 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccCCccccceEecCCCh-------hheeeecc
Confidence 358999999999988899999999999999986 355555 45678999999765432 44466667
Q ss_pred CCeE--EEEeChhHHHHHH
Q 012917 148 PGVL--ARFDGSEIQKMLQ 164 (453)
Q Consensus 148 p~~i--~~idG~~L~~~L~ 164 (453)
.+.| .-+.+.-+..+|+
T Consensus 256 DGtiR~~D~~~~i~e~v~s 274 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLS 274 (498)
T ss_pred CceeeeeeecchhhHHHhh
Confidence 7766 3345555554444
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.55 E-value=0.48 Score=47.51 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=66.2
Q ss_pred CCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917 297 ASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 297 a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
.+.+....-..+++....++.++.-+|..-..--|.++|+.+|.++|=|.|+ +||+-=+...|+.
T Consensus 49 g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH-~aqVNtV~fNees-------------- 113 (307)
T KOG0316|consen 49 GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH-LAQVNTVRFNEES-------------- 113 (307)
T ss_pred cceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc-cceeeEEEecCcc--------------
Confidence 3455667788899999999999877777767778999999999999999998 6777766654331
Q ss_pred CccEEEEEEcCCCCeEEEeecCC
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~ 399 (453)
-.|..+.-+..+.+|++|.
T Consensus 114 ----SVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 114 ----SVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred ----eEEEeccccceeEEEEccc
Confidence 2566777788889999875
No 34
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.33 E-value=0.98 Score=48.38 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred EeecCCCCCCCcEEEEEEEEe----CCcEEEEEeccccEEEEEecCC------cEeeecccCccceeEEEEeeccCCCCc
Q 012917 67 IRPELSPIASEYITAIEWLVF----EEMRALAVGTSRGYFLVYDLKG------DLVHRQLIHPGRILKLRVRGSRRDLTQ 136 (453)
Q Consensus 67 ~~g~l~~~~~e~ITs~~~lp~----~dw~~I~VG~ssG~vrfyte~G------~LL~sQ~lh~~pV~~ik~r~~~~~~~~ 136 (453)
|+-.+..+|.--.-++++-++ .+--.|+||--+|++|+|.+++ +||+...+ ..||++|.+..=..
T Consensus 10 Wst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-~~PILqv~~G~F~s---- 84 (418)
T PF14727_consen 10 WSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-KDPILQVECGKFVS---- 84 (418)
T ss_pred eeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEec-CCcEEEEEeccccC----
Confidence 444453322222345555555 2446999999999999999653 47777666 58999999876322
Q ss_pred CCCCCeEEEEeCCeEEEE
Q 012917 137 DTAEEEVCVVMPGVLARF 154 (453)
Q Consensus 137 ~~~~eel~Ilyp~~i~~i 154 (453)
......|.||.|..++..
T Consensus 85 ~~~~~~LaVLhP~kl~vY 102 (418)
T PF14727_consen 85 GSEDLQLAVLHPRKLSVY 102 (418)
T ss_pred CCCcceEEEecCCEEEEE
Confidence 123568999999987543
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.20 E-value=1.2 Score=50.51 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=61.2
Q ss_pred eeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
...+++.+| +++++|+++..|.|.|+|+.++..++.++|+.+. |....-.+ .+. -+++-+.
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p------------~~~--~~L~Sgs 595 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSS------------ADP--TLLASGS 595 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcC------------CCC--CEEEEEc
Confidence 456778877 5789999999999999999999999999999873 22111100 011 1456667
Q ss_pred CCCeEEEeecCCCCeEEEEEe
Q 012917 388 RKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v 408 (453)
.+|.|.||+++++..+..+..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec
Confidence 799999999999988877764
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.19 E-value=0.87 Score=46.01 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
|+.-|.-..|++.+.-+||+++|.|++-+.--|-++++.+. ..=+..+|.-. |+.--.=. .+
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r----WvWdc~FS-------------~d 269 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR----WVWDCAFS-------------AD 269 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc----eEEeeeec-------------cC
Confidence 33447777899999999999999999999999999999987 22234444432 87532211 01
Q ss_pred ccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
.-|||- +..|+...+|++..|+.|....
T Consensus 270 -g~YlvT-assd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 270 -GEYLVT-ASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred -ccEEEe-cCCCCceeecccccCceeeecC
Confidence 115655 5557999999999999876543
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.19 E-value=18 Score=38.38 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=68.3
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
-...|.+.-+|++.|..++.=+|-++=++++...-+..++--. -.+|....+..+ .....+. .+.+.+| .-+
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~----i~~at~~-~~~~~~l-~s~ 310 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS----ISEATGS-TNGGQVL-GSG 310 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc----hhhccCC-CCCccEE-Eee
Confidence 5667888889999999999999999999999554444333221 123543322111 0011111 1123343 568
Q ss_pred CCCCeEEEeecCCCCeEEEEEecCC---eEEeccccccC
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCAKG---SKILQPTYRFG 422 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~~~---~~Ll~~~~~~~ 422 (453)
.|+++|++|+|++|..+.++--+.+ +.++.|+-++.
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 8999999999999999988875543 44555544443
No 38
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.17 E-value=2.9 Score=43.82 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=58.6
Q ss_pred CC-CCCEEEEEcCC-----CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC--
Q 012917 316 SP-SGSLAAITDSL-----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP-- 387 (453)
Q Consensus 316 sP-~~~laa~tDsl-----GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap-- 387 (453)
.| +++++-++|.- |||.+||..++.++.|+..-+..+. + + ..| .. +|.+=.+
T Consensus 8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~-~--spD-------------g~--~lyva~~~~ 67 (352)
T TIGR02658 8 PASDARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--V-V--ASD-------------GS--FFAHASTVY 67 (352)
T ss_pred CCCCCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--e-E--CCC-------------CC--EEEEEeccc
Confidence 44 77899999986 9999999999999999986665553 2 1 111 11 3556666
Q ss_pred -------CCCeEEEeecCCCCeEEEEEecCC
Q 012917 388 -------RKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 388 -------rRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
|.+.|+||+.+++.-+.-+.+++.
T Consensus 68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 68 SRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred cccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 889999999999999988887655
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.98 E-value=2 Score=43.92 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=78.5
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc-ccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy-RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
-|.-+.+...+++++|+++-++..-..--|.|+|+-..+...|=.+. || |+....-.+ ++..
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~----WVscvrfsP----------~~~~--- 162 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE----WVSCVRFSP----------NESN--- 162 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC----cEEEEEEcC----------CCCC---
Confidence 37777899999999999999999888889999999999999999998 99 998754322 2211
Q ss_pred EEEEEcCCCCeEEEeecCCCCe----------EEEEEecCCeEEecc
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPR----------LLTIQCAKGSKILQP 417 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~R----------V~a~~v~~~~~Ll~~ 417 (453)
..++-+.-++.|+||++++.+- |-+++|++.+-|.-.
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 3678899999999999997654 445566666655544
No 40
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.23 E-value=0.39 Score=32.73 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=32.5
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEE
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLD 335 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD 335 (453)
+..|......+.+|+.+|+++++|++...|.|.++|
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345788889999999999999999999999999987
No 41
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.94 E-value=1.2 Score=49.86 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=71.4
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
+-.+-+++..|+|..++..+.-+-+.|+|..++.=+-=.+|+|| -+.+..-.+.+ . =++-+
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd----NVr~ll~~dDG-------------t--~~ls~ 231 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD----NVRVLLVNDDG-------------T--RLLSA 231 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc----ceEEEEEcCCC-------------C--eEeec
Confidence 33477899999999999999999999999998865555569999 77776554422 1 23789
Q ss_pred CCCCeEEEeecCCCCeEEEEEecCCe
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
..+|.|.+|++.+.++++++.+++.+
T Consensus 232 sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 232 SSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred CCCceEEeeeccccceeeeEEeccCc
Confidence 99999999999999999999999763
No 42
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=90.83 E-value=0.99 Score=51.93 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=67.0
Q ss_pred eeeeeeecccc-----------cccCCCCCcccCCCeee---eccCcceeee-eecceEEE------EeecCCCCCceeE
Q 012917 9 EVGSIACTDLS-----------DLGAGKEGWLVNDPNLL---CALDMHTIAL-ANRYQTVI------INWADPEGLVAKI 67 (453)
Q Consensus 9 ~~~~~~~~~~~-----------~~g~~~~~wl~~~~~~~---~sp~~~~la~-A~~~~~v~------~~w~~~~~~~~~~ 67 (453)
++|||-|-+-+ +.|.-++.=+.|.-.+- +|-.|-++|- +.++|... ..|++. -.|
T Consensus 442 ~vGiI~t~~~e~~~ssIdVeFHD~sihr~~H~~d~~~y~lA~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~----seW 517 (933)
T KOG1274|consen 442 EVGIIRTVVNEANDSSIDVEFHDTSIHRAYHFSDLFGYELADLSEKGTLLASPESESKLGSILYRAHFSWDSH----SEW 517 (933)
T ss_pred ccceEEEEeccCcCceEEEEEeccCccceeeeeccccceeeeccccceEEecccccCCcceEEEEcccCcccc----cce
Confidence 56888854322 23433555555533332 3344443332 33444443 237654 357
Q ss_pred eecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEE
Q 012917 68 RPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV 127 (453)
Q Consensus 68 ~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~ 127 (453)
.=.|.. +|.|++|++-+. .|+|+|+.||||+||..|.-..-- =|+.||+...+
T Consensus 518 tm~lP~--~E~~~~V~~t~~----~Vav~TS~~~lRvFt~gGvq~~I~-t~~gP~vtaag 570 (933)
T KOG1274|consen 518 TMILPL--QESIEAVAATSG----WVAVATSLGYLRVFTIGGVQREIF-TLPGPVVTAAG 570 (933)
T ss_pred eeecCC--CCceeEEEccCc----EEEEEeccceEEEEEecceeeeEe-ecccceEEeec
Confidence 777744 488999987544 799999999999999999754333 46789998873
No 43
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=90.64 E-value=4.2 Score=41.95 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=45.1
Q ss_pred CccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 300 LTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
...|.++.-.+-+|.++| ++++.+..-..+--.|+|+..+..++++-|+-.
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes 230 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES 230 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc
Confidence 356888888999999999 899999988888889999999999999988754
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=90.24 E-value=0.69 Score=49.93 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=84.1
Q ss_pred ccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccce--eeEEEEEecccccccccccCCCCC
Q 012917 301 TCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
..+.+++.-+.+|...| .+.|.+..-..|.|.|+|+-. +..||-+.|++.+= ..|-+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~------------------- 268 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN------------------- 268 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-------------------
Confidence 35888888899999999 899999999999999999998 99999999998731 11111
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcC--cEEEEEeCCCCceEE
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVP--LEVFLLNGDSGQLSV 447 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~--~~~~lld~~~g~l~~ 447 (453)
+..-| .-+.-++.|.+||+.+|+.+..|+.++- .. ...|+| .+.+|.-++||.|.-
T Consensus 269 ~g~~f--LS~sfD~~lKlwDtETG~~~~~f~~~~~----------~~---cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 269 CGTSF--LSASFDRFLKLWDTETGQVLSRFHLDKV----------PT---CVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred cCCee--eeeecceeeeeeccccceEEEEEecCCC----------ce---eeecCCCCCcEEEEecCCCcEEE
Confidence 11113 4677899999999999999999984431 11 223443 467777777776653
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=1.9 Score=43.71 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCCccccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCC
Q 012917 297 ASPLTCLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 375 (453)
Q Consensus 297 a~pl~~l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k 375 (453)
+.|+.++.+++|++.++--.+. ++-..++.=.|-|=|+|-.+..-|+-++|+++.=.+=. ..+
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~--~sp-------------- 157 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA--FSP-------------- 157 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe--cCC--------------
Confidence 4588899999999999999994 55666677789999999999999999999988421111 101
Q ss_pred CCccEEEEEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917 376 SDYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCAK 410 (453)
Q Consensus 376 ~~~~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~~ 410 (453)
... =|+-++.-+|.+.+|++|. |.+.. |.++.
T Consensus 158 ~~~--nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~ 190 (311)
T KOG0277|consen 158 HIP--NLFASASGDGTLRLWDVRSPGKFMS-IEAHN 190 (311)
T ss_pred CCC--CeEEEccCCceEEEEEecCCCceeE-EEecc
Confidence 011 2668999999999999997 44444 66654
No 46
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=89.88 E-value=1 Score=51.46 Aligned_cols=93 Identities=23% Similarity=0.349 Sum_probs=59.9
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEEEEecccc-c--ceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEe
Q 012917 319 GSLAAITDSLGRILLLDTQALVVVRLWKGYR-D--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVW 395 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~~ivRmWKGyR-d--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW 395 (453)
.-+.|++|-.|||+|+|...+.++- |=-.- | -++.|+..... .+.+.|+||.| ..|-+|
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~-~l~~~~~~~qdl~W~~~rd~---------------Srd~LlaIh~s--s~lvLw 140 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVIN-WLSHSNDSVQDLCWVPARDD---------------SRDVLLAIHGS--STLVLW 140 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhh-hhcCCCcchhheeeeeccCc---------------chheeEEecCC--cEEEEE
Confidence 4578899999999999998876543 31111 1 24556654222 12558999998 689999
Q ss_pred ecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCcEEEEE
Q 012917 396 QMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLL 438 (453)
Q Consensus 396 ~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~ll 438 (453)
+..+|.++---. .++...++-+--||.+.++||+
T Consensus 141 ntdtG~k~Wk~~---------ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 141 NTDTGEKFWKYD---------YSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EccCCceeeccc---------cCCcceeeeeeCCCCcceEEEE
Confidence 999999875433 2344444444445666666665
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=89.84 E-value=1.9 Score=47.24 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=58.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+.|++-.+..|..||++.+.|++|.-+.|+|+|+++..+---- .+|.....+.- .=+|.. -+
T Consensus 483 ~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-------w~FHtakI~~~------aWsP~n-----~~ 544 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-------WAFHTAKINCV------AWSPNN-----KL 544 (603)
T ss_pred eecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-------eeeeeeeEEEE------EeCCCc-----eE
Confidence 6677888999999999999999999999999999999983322 22332221110 000010 24
Q ss_pred EEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRT-GPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~-G~RV~a~~v~~ 410 (453)
|--...+-.|-||+|.. ..++.+.++++
T Consensus 545 vATGSlDt~Viiysv~kP~~~i~iknAH~ 573 (603)
T KOG0318|consen 545 VATGSLDTNVIIYSVKKPAKHIIIKNAHL 573 (603)
T ss_pred EEeccccceEEEEEccChhhheEeccccc
Confidence 55566677888999865 34444444433
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.68 E-value=1.6 Score=47.19 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=67.5
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecc--------ccc-------ccc---
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK--------DAA-------TSS--- 368 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~--------~~~-------~~~--- 368 (453)
++..-+++..-||+|+|+.|.-|-|=++|..+..|+|..+++- |-.-.+...... |+. +..
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc-CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence 4567788888899999999999999999988888888888763 223333221111 000 000
Q ss_pred ---------cccCCCCCCccEEEEEEcCCCCeEEEeecCCC-CeEEEEEecC
Q 012917 369 ---------AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTG-PRLLTIQCAK 410 (453)
Q Consensus 369 ---------~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G-~RV~a~~v~~ 410 (453)
.+...- .+.+-.+|+-...+|.|.+|++|.- +++..++.+.
T Consensus 147 ~~l~~htDYVR~g~~-~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDI-SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred EEecCCcceeEeecc-ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 000000 0112247788999999999999996 9999999764
No 49
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=89.65 E-value=1.3 Score=46.31 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=59.1
Q ss_pred CEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917 320 SLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 320 ~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~ 397 (453)
+.+|+.=|-|-|-|+|..+|..++.+|||-++ +++|+... ....|+-+.-+|.|.+|++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-------------------s~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-------------------SPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-------------------CCCeeEEeccCCeEEEEEe
Confidence 67788888999999999999999999999875 45555321 1248899999999999999
Q ss_pred CCCCeEEEEEecC
Q 012917 398 RTGPRLLTIQCAK 410 (453)
Q Consensus 398 ~~G~RV~a~~v~~ 410 (453)
|...+++-+.-..
T Consensus 102 Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 102 RSQAESARISWTQ 114 (376)
T ss_pred ecchhhhheeccC
Confidence 9999888877543
No 50
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=0.43 Score=55.08 Aligned_cols=84 Identities=45% Similarity=0.833 Sum_probs=72.7
Q ss_pred CCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCC--
Q 012917 140 EEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMP-- 217 (453)
Q Consensus 140 ~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~-- 217 (453)
-++.+++-|+...+.++...+.+.+.+..+.+...|.++-+.++....+.....|++..|+..+-.++.|..+.+++.
T Consensus 150 yp~~~~~I~g~sl~~~L~ncq~~Vqkaa~Eknsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~vtas~~~g 229 (1244)
T KOG2727|consen 150 YPEICIVIPGVSLRFDLSNCQSMVQKAAQEKNSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTVTASMPPG 229 (1244)
T ss_pred ecceEEEECCchhhhhHHHHHHHHHHHHHhccCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhhhcccCch
Confidence 456899999999999999999999999999998899999888877665666788999999999888999998887664
Q ss_pred --------CCchhh
Q 012917 218 --------PPLMEV 223 (453)
Q Consensus 218 --------p~~~d~ 223 (453)
||.|++
T Consensus 230 y~a~~k~SpPrySq 243 (1244)
T KOG2727|consen 230 YLALQKPSPPRYSQ 243 (1244)
T ss_pred hhhhccCCCcceee
Confidence 677887
No 51
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=89.37 E-value=1.3 Score=46.06 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=67.2
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
++-.|.+- .+++..+|+|.+.|+.=..|||.++|..+..+-||.-|+=.+=|.=-.. . +.+
T Consensus 18 ~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS----~-------------dgr- 78 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS----R-------------DGR- 78 (405)
T ss_pred ceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec----C-------------CCC-
Confidence 33334444 8999999999999999999999999999999999998876543322211 0 112
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+..-+.|+..+..|++..|..+.-|+..
T Consensus 79 -~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 79 -KLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred -EeeeecCCceeEEEeccCCCceeEEEcc
Confidence 4467889999999999999887777644
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.27 E-value=2.7 Score=47.89 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=68.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
-.|.+-.+.+|++||+|+++.++|--||.+|+.+.+..+++-++=-|-.+| |+.. |. +-|+
T Consensus 51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~--i~fS-------------Pn----g~~f 111 (893)
T KOG0291|consen 51 PLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGA--IKFS-------------PN----GKFF 111 (893)
T ss_pred EeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccce--EEEC-------------CC----CcEE
Confidence 456777899999999999999999999999999999999976644343222 2221 11 1143
Q ss_pred EEEcCCCCeEEEeecCCCCe------------------EEEEEecCCeEEeccccccCc
Q 012917 383 AIHAPRKGIIEVWQMRTGPR------------------LLTIQCAKGSKILQPTYRFGS 423 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~R------------------V~a~~v~~~~~Ll~~~~~~~g 423 (453)
++ .+-+.||||....-.| |.++.=.-.+|+|-.+++-+.
T Consensus 112 av--~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s 168 (893)
T KOG0291|consen 112 AV--GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLS 168 (893)
T ss_pred EE--EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccce
Confidence 33 4567888998875444 334444457777777666555
No 53
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=89.00 E-value=3.3 Score=43.27 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=51.2
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCC
Q 012917 311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 390 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg 390 (453)
..+..+|+|+++-++...|.|.+||+.++.+++-.|--.++.. +.+. .| .+.++-.-|. .+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~--i~~s--~D-------------G~~~~v~n~~--~~ 100 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG--IAVS--PD-------------GKYVYVANYE--PG 100 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE--EEE----T-------------TTEEEEEEEE--TT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce--EEEc--CC-------------CCEEEEEecC--CC
Confidence 4467899999999998889999999999999998887777544 2221 11 1122222333 47
Q ss_pred eEEEeecCCCCeEEEEEec
Q 012917 391 IIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 391 ~lEVW~~~~G~RV~a~~v~ 409 (453)
.+.|+|.++.+-+..+.++
T Consensus 101 ~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEEEEETTT--EEEEEE--
T ss_pred ceeEeccccccceeecccc
Confidence 8888888888777777654
No 54
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=88.95 E-value=7.6 Score=41.18 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=72.4
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEe-------c-cccc-------
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLV-------N-KDAA------- 365 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~-------~-~~~~------- 365 (453)
+.+.-+--.+.+|.++|.+.|+|.....+-|=++|+++|...--.-|+-. +|-=+-+.. . .++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeecccCceEEEecCCCeeEEEech
Confidence 35777778899999999999999999999999999999999887777643 111111100 0 0100
Q ss_pred ccc---cccCCCCCCccEEEEE--------EcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 366 TSS---AYYAPVKSDYCLCLAI--------HAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 366 ~~~---~~~~~~k~~~~l~LvI--------yaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
.++ +.++.-. .-++|.+ -+.|+..+.|||||+-.-|.++.-+++
T Consensus 224 ~nkvIR~YhGHlS--~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 224 YNKVIRHYHGHLS--GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN 278 (460)
T ss_pred hhhhHHHhccccc--eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence 011 0011110 1224444 488999999999999999999886665
No 55
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=88.47 E-value=4.3 Score=42.60 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=60.2
Q ss_pred ECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEeccccc--ceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 315 LSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRD--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 315 lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWKGyRd--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+||+|+.+.++.+ -+.|.++|++++.+++-..-=-+ +|++=... ...-++. .+ +|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~---------~~~ls~d--gk--~l 119 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW---------MTSLTPD--NK--TL 119 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc---------eEEECCC--CC--EE
Confidence 9999988887766 69999999999999986541111 11110000 0000000 12 45
Q ss_pred EEEcCC-CCeEEEeecCCCCeEEEEEecCCeEEeccc
Q 012917 383 AIHAPR-KGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418 (453)
Q Consensus 383 vIyapr-Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~ 418 (453)
.|+-=- .+.|-|.|+.++..+..+.+ ++|.++|++
T Consensus 120 ~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t 155 (352)
T TIGR02658 120 LFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPT 155 (352)
T ss_pred EEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEe
Confidence 555533 89999999999999999999 558888886
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=88.31 E-value=1.7 Score=44.17 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=66.5
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
|+.+|.-++-....|..+|+|++.|+.-...-|.|+|+..++.+|+.- ..-|=.-... .+ .+.
T Consensus 181 pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-----RldwpVRTlS-----FS-------~dg 243 (313)
T KOG1407|consen 181 PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-----RLDWPVRTLS-----FS-------HDG 243 (313)
T ss_pred cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-----cccCceEEEE-----ec-------cCc
Confidence 444566666778899999999999998888889999999999999972 1223211111 00 011
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
. +.-.|.-+..|.|=.+++|.|+.-+.+.
T Consensus 244 ~--~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 244 R--MLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred c--eeeccCccceEEeEecccCCeEEEeecc
Confidence 1 3356788899999999999999988853
No 57
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=88.30 E-value=4.1 Score=38.53 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=54.3
Q ss_pred eeEEEECCCCCEEEEE--cCC-CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 310 GERLTLSPSGSLAAIT--DSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 310 ~~~i~lsP~~~laa~t--Dsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
...|.-||+|+++|++ +++ |.|-++|+.+...|.-.+-..--.|.|-. + .+.+.-+.-+
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP-----d-------------Gr~~~ta~t~ 164 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP-----D-------------GRYLATATTS 164 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC-----C-------------CCEEEEEEec
Confidence 3579999999999986 355 99999999999998877655444444431 1 1122222334
Q ss_pred CCC---CeEEEeecCCCCeEEEEEe
Q 012917 387 PRK---GIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 387 prR---g~lEVW~~~~G~RV~a~~v 408 (453)
||. +-+.||+. +|+.+.....
T Consensus 165 ~r~~~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 165 PRLRVDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred cceeccccEEEEEe-cCeEeEecch
Confidence 443 66789999 5998887664
No 58
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.17 E-value=5.6 Score=42.05 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCeeeEEEECCCCCEEEEE-cCCC--cEEEEEcCCceEEEEeccc-ccceeeEE
Q 012917 307 PRKGERLTLSPSGSLAAIT-DSLG--RILLLDTQALVVVRLWKGY-RDASCVFM 356 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~t-DslG--RV~LiD~~~~~ivRmWKGy-RdAqc~Wi 356 (453)
++.......||+|+.+|.+ +..| +|.++|+.++.+.++..+. .+....|.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wS 295 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWF 295 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEEC
Confidence 3444568899999877764 5455 6999999999998888763 34444443
No 59
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=88.05 E-value=0.74 Score=46.82 Aligned_cols=43 Identities=30% Similarity=0.428 Sum_probs=39.6
Q ss_pred cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
.+.+-.+-++.+||||++.|+...-|+|.|+++-+....|-||
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 4556678999999999999999999999999999999999996
No 60
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=87.61 E-value=3.5 Score=42.01 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=49.4
Q ss_pred eeeccCcceeeeeecceEEE-EeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917 35 LLCALDMHTIALANRYQTVI-INWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH 113 (453)
Q Consensus 35 ~~~sp~~~~la~A~~~~~v~-~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~ 113 (453)
++++.+|.+||+-+++.+-| +.- ++...-+.=|. +..++.-.=.=++| -+|.+.+|.-.++|+|+||+..|..||
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~-Ddf~si~~kcq-VpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAK-DDFSSIIGKCQ-VPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEecc-CCchheeEEEe-cCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEecccceeE
Confidence 68899999999999999988 332 11111111121 21111211122333 289999999999999999999998887
No 61
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=4.1 Score=47.95 Aligned_cols=283 Identities=17% Similarity=0.241 Sum_probs=152.3
Q ss_pred CCeeeeccCcc-eeeeeecceE------------EEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCc--EEEEEe
Q 012917 32 DPNLLCALDMH-TIALANRYQT------------VIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEM--RALAVG 96 (453)
Q Consensus 32 ~~~~~~sp~~~-~la~A~~~~~------------v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw--~~I~VG 96 (453)
...++.||.+- +||.+--... ++.-|..++.++++-+|.++. .+|-.-+.|=++.+. -+||=|
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeecccCCCccceeecc
Confidence 45677888874 3332221111 122344444566777888866 688889999888544 489999
Q ss_pred ccccEEEEEecCC-------cEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHh
Q 012917 97 TSRGYFLVYDLKG-------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQD 169 (453)
Q Consensus 97 ~ssG~vrfyte~G-------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~ 169 (453)
+.+|.|-||+..- ++|..+.-|+.+|+.|++..-+.++....+++-=+.++ ||-
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW----------Dln--------- 147 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW----------DLN--------- 147 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe----------ccC---------
Confidence 9999999999554 46777789999999999877665433332222111111 121
Q ss_pred ccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCc-eeEEEEecc
Q 012917 170 SNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDS-VISAFRLSE 248 (453)
Q Consensus 170 ~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P-~la~y~~~e 248 (453)
+ ...+.+.+..+.+..+..=-||-+.+- |++.|..- +..+.-+..
T Consensus 148 --n------~~tP~~~~~~~~~~eI~~lsWNrkvqh--------------------------ILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 148 --K------PETPFTPGSQAPPSEIKCLSWNRKVSH--------------------------ILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred --C------cCCCCCCCCCCCcccceEeccchhhhH--------------------------HhhccCCCCCceeccccC
Confidence 0 000000000000112223333332211 22222222 222222221
Q ss_pred CCCcchhhhhhhhhhhHHHHHHhhhhhccccCCC-C------CCCCCCCCC----ccccCCCCccccCCCCeeeEEEECC
Q 012917 249 DRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQ-S------PKKSEPKPQ----SFARASPLTCLKDHPRKGERLTLSP 317 (453)
Q Consensus 249 ~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~-~------~~~~e~~p~----~~~~a~pl~~l~D~~R~~~~i~lsP 317 (453)
.+ +++. +|+..... -...+-|..+. + .+...|.-+ .+. -+|+..|.-+.|-+.++.-||
T Consensus 194 ~~--pii~--ls~~~~~~-----~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 194 KK--PIIK--LSDTPGRM-----HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSWCP 263 (1049)
T ss_pred CC--cccc--cccCCCcc-----ceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeeccCC
Confidence 10 0000 11111110 01113565444 1 112222111 011 346666778899999999999
Q ss_pred CC-CEEEEEcCCCcEEEEEcCCceEEEEecc----cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 318 SG-SLAAITDSLGRILLLDTQALVVVRLWKG----YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 318 ~~-~laa~tDslGRV~LiD~~~~~ivRmWKG----yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
.. +|++.+--.+|||.++..+|.+|--.-- |+|-| |-. .+ . .++=-|--.|-|
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~--w~p----r~--------------P--~~~A~asfdgkI 321 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ--WCP----RN--------------P--SVMAAASFDGKI 321 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee--ecC----CC--------------c--chhhhheeccce
Confidence 55 9999999999999999999999987755 55422 221 11 1 122334458999
Q ss_pred EEeecCCCC
Q 012917 393 EVWQMRTGP 401 (453)
Q Consensus 393 EVW~~~~G~ 401 (453)
+|++++.+.
T Consensus 322 ~I~sl~~~~ 330 (1049)
T KOG0307|consen 322 SIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC
Confidence 999998766
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=87.29 E-value=3.3 Score=43.69 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=79.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEE-----EEEeccccc-------ccc-------
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM-----EMLVNKDAA-------TSS------- 368 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi-----~~~~~~~~~-------~~~------- 368 (453)
-.|.-+|+.-+.++.....+.--|.++|+++|.++...=|+-||-.+-. .+....|.. +.+
T Consensus 236 HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 236 HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 3577899999999998888999999999999999999999988866533 122222211 111
Q ss_pred ---cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC--eEEeccccc
Q 012917 369 ---AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG--SKILQPTYR 420 (453)
Q Consensus 369 ---~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~--~~Ll~~~~~ 420 (453)
+.......++---+++-|.-+..|+||++.++..|-+++.++- +.|-|.+.-
T Consensus 316 LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rl 372 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRL 372 (499)
T ss_pred HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeE
Confidence 1111122222113778999999999999999999999998875 344444433
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.82 E-value=4 Score=46.37 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=48.1
Q ss_pred CCcEEEEEeccccEEEEEecCCcEeeecc-cCcc--------ceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeC-
Q 012917 88 EEMRALAVGTSRGYFLVYDLKGDLVHRQL-IHPG--------RILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDG- 156 (453)
Q Consensus 88 ~dw~~I~VG~ssG~vrfyte~G~LL~sQ~-lh~~--------pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG- 156 (453)
||-.-.+||+=.||.|||+-.|..|.++. +|.. +|..|.+.... .++|.|--.+- |=++||
T Consensus 461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~--------~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD--------PDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC--------CCeEEEecCCCceEEEecc
Confidence 56678899999999999999999888873 3322 34444433332 34788888885 777899
Q ss_pred -hhHHHHHH
Q 012917 157 -SEIQKMLQ 164 (453)
Q Consensus 157 -~~L~~~L~ 164 (453)
-+|-.-++
T Consensus 533 ~~~lv~KfK 541 (712)
T KOG0283|consen 533 DKDLVHKFK 541 (712)
T ss_pred chhhhhhhc
Confidence 66654433
No 64
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=85.31 E-value=15 Score=40.56 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=68.7
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
++-|+.|=..++--+|||.++|.+-+.|.|+|+|=.+|..+-...+ -+|.=+=|-...=. | |.-.|
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWs----------P---Ds~~~ 250 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWS----------P---DSTQF 250 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEEC----------C---CCceE
Confidence 3666777888999999999999999999999999999999988765 33332222221111 1 11224
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
|- +.-+-.++||++-++..+-++..+..
T Consensus 251 ~T--~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 251 LT--VSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EE--ecCCceEEEEEeeccceEEEeecCCc
Confidence 43 34467899999999999999998865
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=85.15 E-value=2.1 Score=46.30 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=51.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
...+-.||+|++++..|+.|+|..+|-.+-.++.-||+|-.. ++.|+... +. -||-+.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e-------------~S-------kvat~~ 494 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE-------------PS-------KVATCG 494 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC-------------cc-------eeEecc
Confidence 356778999999999999999999999999999999999321 23454321 11 345666
Q ss_pred CCCeEEEee
Q 012917 388 RKGIIEVWQ 396 (453)
Q Consensus 388 rRg~lEVW~ 396 (453)
=.|.|.||+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 789999995
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.76 E-value=10 Score=45.64 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=65.5
Q ss_pred ccCCCCe--eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRK--GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~--~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+.-..|+ +.+|++||.+.|+++.-+-|-+.|+|+.-+..++-|+===+|+.-=+.+..-.. +.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~----------~~----- 1253 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP----------QE----- 1253 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC----------CC-----
Confidence 3344455 689999999999999999999999999999999999743333332222211100 00
Q ss_pred EEEEEcC--CCCeEEEeecCCCCeEEEEEec
Q 012917 381 CLAIHAP--RKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 381 ~LvIyap--rRg~lEVW~~~~G~RV~a~~v~ 409 (453)
.-.|.+. -.+-|++|+|-+|.|=.++-++
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 1223333 3688999999999999999988
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.09 E-value=4.2 Score=41.02 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=64.3
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
+.+++.||+++-..++--.+-+=|+|-.+|.++..+||+-+-+..==-.... ++ --|+-..-+
T Consensus 186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q--------------sd---thV~sgSED 248 (307)
T KOG0316|consen 186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ--------------SD---THVFSGSED 248 (307)
T ss_pred ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc--------------cc---eeEEeccCC
Confidence 6789999998766666666778899999999999999998744321111111 12 257888999
Q ss_pred CeEEEeecCCCCeEEEEEecCC
Q 012917 390 GIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~v~~~ 411 (453)
|.+-+|++-.+.-+..+.++..
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~ 270 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVST 270 (307)
T ss_pred ceEEEEEeccceeeeeeccCCc
Confidence 9999999999999988886644
No 68
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=83.86 E-value=6.6 Score=41.71 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=37.1
Q ss_pred eeeeeecc-eEEEEeecCCCCCceeEeec-----CCCCCCCcEEEEEEEEe---CCc---EEEEEeccccEEEEEe
Q 012917 43 TIALANRY-QTVIINWADPEGLVAKIRPE-----LSPIASEYITAIEWLVF---EEM---RALAVGTSRGYFLVYD 106 (453)
Q Consensus 43 ~la~A~~~-~~v~~~w~~~~~~~~~~~g~-----l~~~~~e~ITs~~~lp~---~dw---~~I~VG~ssG~vrfyt 106 (453)
.+|||+++ .++|.--..+ .|-.... +....++.||+++|-.+ .|- .|+.|||+.|.|..|.
T Consensus 99 Fvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fk 171 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFK 171 (395)
T ss_dssp EEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEE
Confidence 45778765 4555443222 2333222 23345689999999888 333 8999999999999996
No 69
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=83.71 E-value=9.2 Score=39.59 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCc------eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
.+-..+.+|+|+++|+.-..--..++++.+. .+.|+.+||+. ++..-.-.+.+ .
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg----ylScC~f~dD~----------------~ 158 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG----YLSCCRFLDDN----------------H 158 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc----eeEEEEEcCCC----------------c
Confidence 4667899999999999754455677777766 78899999998 77654333211 2
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+|-+.-+...-+|++.+|+++-.|+-+.|
T Consensus 159 ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred eEecCCCceEEEEEcccceEEEEecCCcc
Confidence 35566677888999999999999996665
No 70
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.63 E-value=2.9 Score=46.75 Aligned_cols=86 Identities=22% Similarity=0.191 Sum_probs=58.3
Q ss_pred CeeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEE-EEEEEEeCCcEEEEEeccccEEEEEe-cCC
Q 012917 33 PNLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYIT-AIEWLVFEEMRALAVGTSRGYFLVYD-LKG 109 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~IT-s~~~lp~~dw~~I~VG~ssG~vrfyt-e~G 109 (453)
..+-.+|--|+||++... .+++-+-..+. -| +++ .++|.+| +++|= +|-..+||||.+|.+++.+ |+|
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n~qR----lw--tip-~p~~~v~~sL~W~--~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLNWQR----LW--TIP-IPGENVTASLCWR--PDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEeccce----eE--ecc-CCCCccceeeeec--CCCCEEEEEecCCeEEEEEccCC
Confidence 344567999999988777 46663311111 11 122 1567788 66665 4789999999999999999 889
Q ss_pred cEeeecccC-ccceeEEEE
Q 012917 110 DLVHRQLIH-PGRILKLRV 127 (453)
Q Consensus 110 ~LL~sQ~lh-~~pV~~ik~ 127 (453)
..|.+..+. +++|.++-.
T Consensus 95 ~~l~~~~~s~e~~is~~~w 113 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIW 113 (665)
T ss_pred Cceeccccccccchheeec
Confidence 999887665 446655443
No 71
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=83.32 E-value=8.8 Score=36.30 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=51.1
Q ss_pred eeeEEEECCCCCEE-EEE-cCCCcEEEEEcCCceEEEEe-cccccceeeEEEEEecccccccccccCCCCCCccEEEEE-
Q 012917 309 KGERLTLSPSGSLA-AIT-DSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI- 384 (453)
Q Consensus 309 ~~~~i~lsP~~~la-a~t-DslGRV~LiD~~~~~ivRmW-KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI- 384 (453)
.+..++=+|+|+.+ +++ +.-++|.|+|+. +..+... ++++. .+.|=. . .. +|++
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n-~i~wsP----------------~--G~--~l~~~ 118 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRN-TISWSP----------------D--GR--FLVLA 118 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCce-EEEECC----------------C--CC--EEEEE
Confidence 48999999998654 443 456799999997 4444433 33443 233321 1 11 3444
Q ss_pred -EcCCCCeEEEeecCCCCeEEEEEec
Q 012917 385 -HAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 385 -yaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+.-..|.|++|++++..++..+.-+
T Consensus 119 g~~n~~G~l~~wd~~~~~~i~~~~~~ 144 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKKKKISTFEHS 144 (194)
T ss_pred EccCCCcEEEEEECCCCEEeeccccC
Confidence 3344688999999999999887744
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.06 E-value=6.8 Score=42.31 Aligned_cols=86 Identities=14% Similarity=0.298 Sum_probs=61.0
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
....+.+-|+|.|...+++.|-...-|..+|..+-+---- -.+|.--...- ..| .|.|.-|.|
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~f--------------HpD-gLifgtgt~- 367 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAF--------------HPD-GLIFGTGTP- 367 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeE--------------cCC-ceEEeccCC-
Confidence 3567889999999999999999999999999776543110 11111111100 012 678888888
Q ss_pred CCeEEEeecCCCCeEEEEEecCC
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+|+|+||++..+.-++.|-.+.+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred CceEEEEEcCCccccccCCCCCC
Confidence 99999999999988888776543
No 73
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=82.79 E-value=2.3 Score=31.97 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=30.4
Q ss_pred CCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917 76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH 113 (453)
Q Consensus 76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~ 113 (453)
.++|+++.|=|-.| .||+|+.+|.|.+|..+|..+.
T Consensus 11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCC--EEEEEECCCeEEEEECCCcCcc
Confidence 46688888877666 7999999999999999998765
No 74
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=82.63 E-value=7.8 Score=44.99 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=78.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
+..++++=+|+++|..-+.=-|-|+++..+-..+..+|+- |++-=+....+ .-||+.-+- .
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~-apVl~l~~~p~-----------------~~fLAvss~-d 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD-APVLQLSYDPK-----------------GNFLAVSSC-D 159 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC-CceeeeeEcCC-----------------CCEEEEEec-C
Confidence 5578999999888886555569999999999999999984 44443332211 226776655 9
Q ss_pred CeEEEeecCCCCeEEEEEecCCeEEeccccccC-ccCCCCC-CcC-cEEEEEeCCCCceEEEecc
Q 012917 390 GIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFG-SSMASSP-YVP-LEVFLLNGDSGQLSVLNRS 451 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~-g~~~~~~-~~~-~~~~lld~~~g~l~~i~~~ 451 (453)
|.|.||++++|....++. .+.+.-.+. ......+ |+| ..=+++-|.++.++.++|.
T Consensus 160 G~v~iw~~~~~~~~~tl~------~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLT------GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ceEEEEEcccchhhhhcc------cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999776655554 223322222 1111222 777 4777777888888888874
No 75
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=82.02 E-value=9.5 Score=39.91 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCEEEEEc-CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917 319 GSLAAITD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 319 ~~laa~tD-slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~ 397 (453)
+.|+.+++ .-|.|.+||..+..+++..+.--+. .....-.. |...++|+ .|.|.|-++|+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~~s~--------------Dgr~~yv~--~rdg~vsviD~ 65 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---HAGLKFSP--------------DGRYLYVA--NRDGTVSVIDL 65 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---EEEEE-TT---------------SSEEEEE--ETTSEEEEEET
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---eeEEEecC--------------CCCEEEEE--cCCCeEEEEEC
Confidence 46777765 4799999999999999988754342 11111111 12223333 57899999999
Q ss_pred CCCCeEEEEEecCCeEEeccc--cccCccCCCCCCcCcEEEEEeCCCCc
Q 012917 398 RTGPRLLTIQCAKGSKILQPT--YRFGSSMASSPYVPLEVFLLNGDSGQ 444 (453)
Q Consensus 398 ~~G~RV~a~~v~~~~~Ll~~~--~~~~g~~~~~~~~~~~~~lld~~~g~ 444 (453)
.+++.+..+.++.+.+=+.-+ -+..- ..-|.++++.+||..+.+
T Consensus 66 ~~~~~v~~i~~G~~~~~i~~s~DG~~~~---v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 66 ATGKVVATIKVGGNPRGIAVSPDGKYVY---VANYEPGTVSVIDAETLE 111 (369)
T ss_dssp TSSSEEEEEE-SSEEEEEEE--TTTEEE---EEEEETTEEEEEETTT--
T ss_pred CcccEEEEEecCCCcceEEEcCCCCEEE---EEecCCCceeEecccccc
Confidence 999999999998765433221 11110 112677888888876554
No 76
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.37 E-value=35 Score=38.65 Aligned_cols=220 Identities=16% Similarity=0.254 Sum_probs=137.9
Q ss_pred CcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEe
Q 012917 77 EYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFD 155 (453)
Q Consensus 77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~id 155 (453)
+-|.+.-.|+=.+| |++|-++++||+|. .+|+++..=--|++-|.+|.+..+.+. ||-.
T Consensus 56 ~PvRa~kfiaRknW--iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~-----------vLts------- 115 (794)
T KOG0276|consen 56 VPVRAAKFIARKNW--IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY-----------VLTS------- 115 (794)
T ss_pred cchhhheeeeccce--EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe-----------EEec-------
Confidence 44778888888899 78999999999999 669999988889999999998777651 1110
Q ss_pred ChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEe
Q 012917 156 GSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTI 235 (453)
Q Consensus 156 G~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~v 235 (453)
...+-.|.|+.++.=.|.- .| +|...++..
T Consensus 116 -----------------------------------SDDm~iKlW~we~~wa~~q-tf--------------eGH~HyVMq 145 (794)
T KOG0276|consen 116 -----------------------------------SDDMTIKLWDWENEWACEQ-TF--------------EGHEHYVMQ 145 (794)
T ss_pred -----------------------------------CCccEEEEeeccCceeeee-EE--------------cCcceEEEE
Confidence 0125667777765332221 11 122223331
Q ss_pred CCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEE
Q 012917 236 GEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTL 315 (453)
Q Consensus 236 G~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~l 315 (453)
|+ |+.++..++ + ++- +-.-.| .|.=.+ ..|...|.-+.|.+..|.-
T Consensus 146 -----v~-fnPkD~ntF------a----S~s---LDrTVK-VWslgs--------------~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 146 -----VA-FNPKDPNTF------A----SAS---LDRTVK-VWSLGS--------------PHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred -----EE-ecCCCccce------e----eee---ccccEE-EEEcCC--------------CCCceeeeccccCcceEEe
Confidence 22 334433222 1 120 111223 552221 1233456666777788887
Q ss_pred CCCC--CEEEE-EcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 316 SPSG--SLAAI-TDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 316 sP~~--~laa~-tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
=|.| -+... +|. =-|=++|-++...|+..+|+-. -+....- +.-|=++|-..-+|.+
T Consensus 192 y~~gdkpylIsgaDD-~tiKvWDyQtk~CV~TLeGHt~----Nvs~v~f---------------hp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 192 YTGGDKPYLISGADD-LTIKVWDYQTKSCVQTLEGHTN----NVSFVFF---------------HPELPIIISGSEDGTV 251 (794)
T ss_pred ccCCCcceEEecCCC-ceEEEeecchHHHHHHhhcccc----cceEEEe---------------cCCCcEEEEecCCccE
Confidence 7765 34444 443 3678899999999999998876 2322111 1223488999999999
Q ss_pred EEeecCC----------CCeEEEEEecCCeEEeccccc
Q 012917 393 EVWQMRT----------GPRLLTIQCAKGSKILQPTYR 420 (453)
Q Consensus 393 EVW~~~~----------G~RV~a~~v~~~~~Ll~~~~~ 420 (453)
.||+-.+ +.||-++...|+.+.+--++-
T Consensus 252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 9999876 678888888787776655544
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.33 E-value=3.1 Score=44.52 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=39.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 351 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA 351 (453)
-.+++.||++.|+|+.-..|+|.++++.++.+..+.|+-+..
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~ 431 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN 431 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence 678899999999999999999999999999999999998886
No 78
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=80.43 E-value=51 Score=30.82 Aligned_cols=92 Identities=27% Similarity=0.337 Sum_probs=64.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
+....-.+..+..+|++++.+.... .|.+.++|+..+..++..+|..+ .+....-.+. .+ +
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~-----------~~---~ 212 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD----PVSSLAFSPD-----------GG---L 212 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC----ceEEEEEcCC-----------cc---e
Confidence 4555555669999999988777775 99999999999999999999544 2222211110 01 3
Q ss_pred EEEEcCCCCeEEEeecCCCCeEE-EEEecCCe
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLL-TIQCAKGS 412 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~-a~~v~~~~ 412 (453)
+++-....|.+.+|+.+++..+. .+......
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 44446888999999998888887 45544443
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.35 E-value=26 Score=34.92 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=23.2
Q ss_pred EEEECCCCCEEEEEcC-CCcEEEEEcCC
Q 012917 312 RLTLSPSGSLAAITDS-LGRILLLDTQA 338 (453)
Q Consensus 312 ~i~lsP~~~laa~tDs-lGRV~LiD~~~ 338 (453)
++.++|+|+++.+++. -+.|.++|+..
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 5799999999888765 89999999973
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=80.03 E-value=8.5 Score=44.39 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=41.7
Q ss_pred cEEEEEEEEe--CCcEEEEEeccccEEEEEecCCcEeeecc--cCccceeEEEEeeccC
Q 012917 78 YITAIEWLVF--EEMRALAVGTSRGYFLVYDLKGDLVHRQL--IHPGRILKLRVRGSRR 132 (453)
Q Consensus 78 ~ITs~~~lp~--~dw~~I~VG~ssG~vrfyte~G~LL~sQ~--lh~~pV~~ik~r~~~~ 132 (453)
+||++ .+ ++-...|+|.++|++.||+.++..|+.|+ -|++.|..+.+....+
T Consensus 246 ~Vtsl---SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 246 RVTSL---SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred ceeEE---EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 46665 45 35689999999999999999999999996 4778888887776654
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.99 E-value=40 Score=33.59 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=22.9
Q ss_pred eEEEECCCCCEEEEE-cCCCcEEEEEcCC
Q 012917 311 ERLTLSPSGSLAAIT-DSLGRILLLDTQA 338 (453)
Q Consensus 311 ~~i~lsP~~~laa~t-DslGRV~LiD~~~ 338 (453)
..|+++|+|+++.++ ...|+|.++|+.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 579999999876665 5689999999973
No 82
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.67 E-value=10 Score=40.23 Aligned_cols=108 Identities=19% Similarity=0.151 Sum_probs=75.3
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccc-----cccc--------
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDA-----ATSS-------- 368 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~-----~~~~-------- 368 (453)
++.-.+-...++..-|+--+.|++-..+-|-++|..+|.+.|-.|||-|+ +.=|.+...+.. ...+
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-v~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-VFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-eeEEEEecCccEEEecCCccchhheeHHH
Confidence 45566667888899999999999988999999999999999999999999 444444333210 0000
Q ss_pred --------cccCCCCCCc----cEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 369 --------AYYAPVKSDY----CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 369 --------~~~~~~k~~~----~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+.+..-+.. .---+..+.|+..|..|++.+|-.|.+|.-+.
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch
Confidence 0001000000 00135678899999999999999999887553
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=78.73 E-value=4.6 Score=42.27 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=62.7
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....++..|-++.-+..+...--|=+--+..|..++-++|+-. ++.-.--++ +. .-+|.|.
T Consensus 307 kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS----yvn~a~ft~-------------dG--~~iisaS 367 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS----YVNEATFTD-------------DG--HHIISAS 367 (508)
T ss_pred cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc----cccceEEcC-------------CC--CeEEEec
Confidence 4467788888886666665555666678899999999999887 664221111 12 2569999
Q ss_pred CCCeEEEeecCCCCeEEEEEecC
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+|.|+||+++++.++.+|+...
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred CCccEEEecCcchhhhhhccCCC
Confidence 99999999999999999999654
No 84
>PRK01742 tolB translocation protein TolB; Provisional
Probab=78.24 E-value=8 Score=40.70 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=49.5
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCC
Q 012917 311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 390 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg 390 (453)
.....+|+|++++.+.. .+|+++|+.++...++.+++.+-.+.|-. +.. +++|+-.+|
T Consensus 336 ~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~~~~~~~~~sP-------------------dG~--~i~~~s~~g 393 (429)
T PRK01742 336 YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSSTFLDESPSISP-------------------NGI--MIIYSSTQG 393 (429)
T ss_pred CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCCCCCCCceECC-------------------CCC--EEEEEEcCC
Confidence 35778999998888755 57888999999887777776553333310 111 456665667
Q ss_pred eEEEeec--CCCCeEEEEEe
Q 012917 391 IIEVWQM--RTGPRLLTIQC 408 (453)
Q Consensus 391 ~lEVW~~--~~G~RV~a~~v 408 (453)
...+|.+ .+|..+..++.
T Consensus 394 ~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 394 LGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CceEEEEEECCCCceEEccC
Confidence 6666554 35766666653
No 85
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=77.77 E-value=15 Score=37.85 Aligned_cols=83 Identities=11% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCeeeEEEECCC--CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 307 PRKGERLTLSPS--GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 307 ~R~~~~i~lsP~--~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
+-.+..++.+|+ .-+++.+-..+-|=++|+.+-.+..++-|+-. -+...+..+ |. -|.+
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~----~v~t~~vSp-------------DG--slca 208 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG----YVNTVTVSP-------------DG--SLCA 208 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc----cEEEEEECC-------------CC--CEEe
Confidence 566899999998 67888899999999999999999999998655 454444332 33 3669
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEe
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~v 408 (453)
|..+.|.+-+|+++.|+.++++..
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccC
Confidence 999999999999999998887763
No 86
>PRK04922 tolB translocation protein TolB; Provisional
Probab=77.50 E-value=25 Score=37.05 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.4
Q ss_pred eeEEEECCCCCEEEE-EcCCCc--EEEEEcCCceEEEEe
Q 012917 310 GERLTLSPSGSLAAI-TDSLGR--ILLLDTQALVVVRLW 345 (453)
Q Consensus 310 ~~~i~lsP~~~laa~-tDslGR--V~LiD~~~~~ivRmW 345 (453)
....+.+|+|++++. +|..|+ |+++|+.++..-|+-
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 346788999976654 677775 999999988887763
No 87
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=76.43 E-value=16 Score=40.78 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=64.9
Q ss_pred ecccccccCCCCCcccC-----CCe--eeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCC-------CCC---
Q 012917 15 CTDLSDLGAGKEGWLVN-----DPN--LLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSP-------IAS--- 76 (453)
Q Consensus 15 ~~~~~~~g~~~~~wl~~-----~~~--~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~-------~~~--- 76 (453)
..|+=.|-+-...||+- .++ +.+.+...+| |.|. -=+|--|++-.... +|.|+. +.+
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl--a~Gt~~g~VEfwDpR~ksr---v~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL--ACGTEDGVVEFWDPRDKSR---VGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceE--EecccCceEEEecchhhhh---heeeecccccCCCcccccc
Confidence 34444555555667753 122 3344444444 4444 33445687765322 222211 011
Q ss_pred CcEEEEEEEEeCC-cEEEEEeccccEEEEEec--CCcEeeecccCccceeEEEEeec
Q 012917 77 EYITAIEWLVFEE-MRALAVGTSRGYFLVYDL--KGDLVHRQLIHPGRILKLRVRGS 130 (453)
Q Consensus 77 e~ITs~~~lp~~d-w~~I~VG~ssG~vrfyte--~G~LL~sQ~lh~~pV~~ik~r~~ 130 (453)
-.|||+ .|.| -.=++||+++|+|.||+. .--||...+.++.||.+|.....
T Consensus 229 ~svTal---~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 229 PSVTAL---KFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred CcceEE---EecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 225554 5655 688999999999999994 47788888999999999996443
No 88
>PRK01742 tolB translocation protein TolB; Provisional
Probab=76.10 E-value=25 Score=37.00 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=28.7
Q ss_pred eeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEecc
Q 012917 309 KGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 347 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKG 347 (453)
....+..+|+|++++. .+.-| +|.++|+.++.+.++-.+
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 290 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG 290 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence 3446889999986666 45555 678899998888777654
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=74.64 E-value=13 Score=40.08 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=52.6
Q ss_pred CCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCce-EEEEecccccce--eeEEEEEecccccccccccCCCCCCccEEE
Q 012917 307 PRKGERLTLSP-SGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 307 ~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~-ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
.+...++...| ++.++|+..+.|||.|+|+.++. .+....|++|+- +.|-. .. .. .|
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP----------------h~-et--vL 332 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP----------------HN-ET--VL 332 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC----------------CC-Cc--ee
Confidence 46677889999 67888889999999999999976 467888999852 23321 00 11 46
Q ss_pred EEEcCCCCeEEEeecC
Q 012917 383 AIHAPRKGIIEVWQMR 398 (453)
Q Consensus 383 vIyaprRg~lEVW~~~ 398 (453)
+.-. -+|.|-||++-
T Consensus 333 ASSg-~D~rl~vWDls 347 (422)
T KOG0264|consen 333 ASSG-TDRRLNVWDLS 347 (422)
T ss_pred Eecc-cCCcEEEEecc
Confidence 6655 68888888885
No 90
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.53 E-value=37 Score=35.06 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred CeeeEEEECCCCCEEEEE-cCCCc----EEEEEcCCceEEE-EecccccceeeEE
Q 012917 308 RKGERLTLSPSGSLAAIT-DSLGR----ILLLDTQALVVVR-LWKGYRDASCVFM 356 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~t-DslGR----V~LiD~~~~~ivR-mWKGyRdAqc~Wi 356 (453)
..+....+||+|+++|.+ |..|. +.++|+.+|..+. ...+.+-..+.|.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~ 178 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWS 178 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEEC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEe
Confidence 455678999999988885 77776 9999999998876 4444444346675
No 91
>PRK04792 tolB translocation protein TolB; Provisional
Probab=74.48 E-value=30 Score=36.93 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=31.5
Q ss_pred eEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEeccc-ccceeeE
Q 012917 311 ERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKGY-RDASCVF 355 (453)
Q Consensus 311 ~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKGy-RdAqc~W 355 (453)
.....||+|+.+|. .+..| +|+++|+.++.+.++-.+. -+....|
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~w 313 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSW 313 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEE
Confidence 46789999986665 45556 4999999999988876542 2334444
No 92
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=74.43 E-value=17 Score=41.26 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=42.6
Q ss_pred CCCcEEEEEEEEe--CCc-EEEEEeccccEEEEEecC--------CcE----eeec-ccCccceeEEEEeecc
Q 012917 75 ASEYITAIEWLVF--EEM-RALAVGTSRGYFLVYDLK--------GDL----VHRQ-LIHPGRILKLRVRGSR 131 (453)
Q Consensus 75 ~~e~ITs~~~lp~--~dw-~~I~VG~ssG~vrfyte~--------G~L----L~sQ-~lh~~pV~~ik~r~~~ 131 (453)
-++.+|++.++|. ++- -||+||+..|-+.+|+-. |.- -+.+ +-|.+.|.+|+.|...
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc
Confidence 3688999999999 333 499999999999999933 221 1222 4678899999988653
No 93
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=74.07 E-value=19 Score=37.33 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=58.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE--EecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR--LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR--mWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
...++-.++.+.-++++|+-|++..++-..+.+-. -||++- ++ +|+-.....+. =||.+.
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He-~E-~Wta~f~~~~p----------------nlvytG 184 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE-FE-AWTAKFSDKEP----------------NLVYTG 184 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccc-ee-eeeeecccCCC----------------ceEEec
Confidence 56678888999999999999999999988888877 899873 33 36654433221 388899
Q ss_pred CCCCeEEEeecC-CCCeE
Q 012917 387 PRKGIIEVWQMR-TGPRL 403 (453)
Q Consensus 387 prRg~lEVW~~~-~G~RV 403 (453)
.-+|.|-.|++| .+.++
T Consensus 185 gDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred CCCceEEEEEecCCccee
Confidence 999999999999 34433
No 94
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=74.02 E-value=19 Score=36.08 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=38.2
Q ss_pred CCCcEEEEEEEEeCC-----cEEEEEecc---------c-cEEEEEecCC--------cEeeecccCccceeEEE
Q 012917 75 ASEYITAIEWLVFEE-----MRALAVGTS---------R-GYFLVYDLKG--------DLVHRQLIHPGRILKLR 126 (453)
Q Consensus 75 ~~e~ITs~~~lp~~d-----w~~I~VG~s---------s-G~vrfyte~G--------~LL~sQ~lh~~pV~~ik 126 (453)
++|.++|++-+.+.+ ..+|+|||. + |.+.+|+-.- .++++.- .+.||.+|.
T Consensus 22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~ 95 (321)
T PF03178_consen 22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAIC 95 (321)
T ss_dssp TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEE
T ss_pred CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhh
Confidence 589999999999964 799999997 3 9999999554 2333333 367888777
No 95
>PRK02889 tolB translocation protein TolB; Provisional
Probab=73.91 E-value=33 Score=36.15 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=28.4
Q ss_pred CeeeEEEECCCCCEEEE-EcCC--CcEEEEEcCCceEEEEecc
Q 012917 308 RKGERLTLSPSGSLAAI-TDSL--GRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~-tDsl--GRV~LiD~~~~~ivRmWKG 347 (453)
........||+|+.+|. ++.. -+|+++|+..+.+-++-++
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 282 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS 282 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC
Confidence 34456889999976665 4444 4689999988887777553
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.54 E-value=18 Score=41.63 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=68.7
Q ss_pred CeeeeccC--cceeee-eecceEEE-EeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-c
Q 012917 33 PNLLCALD--MHTIAL-ANRYQTVI-INWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-L 107 (453)
Q Consensus 33 ~~~~~sp~--~~~la~-A~~~~~v~-~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e 107 (453)
++....-. |.++|+ |.++.++- .+-..-++.=..|+ .-..||++. +.+|---+||||.+|.|++|+ +
T Consensus 24 ~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~------~k~evt~l~--~~~d~l~lAVGYaDGsVqif~~~ 95 (888)
T KOG0306|consen 24 INFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLK------KKAEVTCLR--SSDDILLLAVGYADGSVQIFSLE 95 (888)
T ss_pred eeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhc------ccceEEEee--ccCCcceEEEEecCceEEeeccC
Confidence 55555444 788888 77776553 22110000001111 112355542 337788899999999999999 6
Q ss_pred CCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeC----CeEEEEeC
Q 012917 108 KGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMP----GVLARFDG 156 (453)
Q Consensus 108 ~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp----~~i~~idG 156 (453)
++..++.=-.|..+|.-|++-.-...+ -..+.+--+|||. ....++.|
T Consensus 96 s~~~~~tfngHK~AVt~l~fd~~G~rl-aSGskDt~IIvwDlV~E~Gl~rL~G 147 (888)
T KOG0306|consen 96 SEEILITFNGHKAAVTTLKFDKIGTRL-ASGSKDTDIIVWDLVGEEGLFRLRG 147 (888)
T ss_pred CCceeeeecccccceEEEEEcccCceE-eecCCCccEEEEEeccceeeEEeec
Confidence 788888777799999988876543211 1122344455554 34677777
No 97
>PRK02889 tolB translocation protein TolB; Provisional
Probab=71.82 E-value=64 Score=34.02 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=29.8
Q ss_pred CCCCeeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRL 344 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRm 344 (453)
..+....+...||+|+.+|. ++.-| .|.++|+.+|...++
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l 235 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV 235 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe
Confidence 44455678899999987766 44433 599999999987776
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=71.72 E-value=5.4 Score=45.53 Aligned_cols=141 Identities=24% Similarity=0.236 Sum_probs=81.8
Q ss_pred cceEEEEeCCCceeEEEEeccCCCcch-hhhhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCC---ccccCCCCccc
Q 012917 228 RYFCAVTIGEDSVISAFRLSEDRSRSL-VGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQ---SFARASPLTCL 303 (453)
Q Consensus 228 ~~~~~i~vG~~P~la~y~~~e~~~~s~-~~a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~---~~~~a~pl~~l 303 (453)
...|++|+-++-.|-.+.++.+..... --.++| + +++|+.+-... ++-.+-+ -+.+ .+.++
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils----~------~l~ki~y~d~~---~q~~~d~~~~~fdk--a~~s~ 455 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS----A------NLSKIPYEDST---QQIMHDASAGIFDK--ALVST 455 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccch----h------hhhcCccccCc---hhhhhhccCCcccc--cchhh
Confidence 445688888888888887776444321 112333 1 23333331111 0111111 1122 13468
Q ss_pred cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
+|++-.+.+|++||+|+..|..|..|-+=++|++.....- ++++.+.+-- ...+ .+.+..+-|.
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-----------~~eAHesEil---cLey--S~p~~~~kLL 519 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-----------FMEAHESEIL---CLEY--SFPVLTNKLL 519 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-----------heecccceeE---EEee--cCchhhhHhh
Confidence 9999999999999999999999999999999999886543 4444433210 0000 0111122356
Q ss_pred EEcCCCCeEEEeecCC
Q 012917 384 IHAPRKGIIEVWQMRT 399 (453)
Q Consensus 384 IyaprRg~lEVW~~~~ 399 (453)
-.|.|+.+|-|+++..
T Consensus 520 ASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKR 535 (1080)
T ss_pred hhccCCceEEEEeccc
Confidence 6777777888877643
No 99
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=71.38 E-value=32 Score=33.22 Aligned_cols=68 Identities=25% Similarity=0.450 Sum_probs=46.9
Q ss_pred ccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcE
Q 012917 38 ALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDL 111 (453)
Q Consensus 38 sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~L 111 (453)
......|++|.+.++.+.+|......-.....++.- .+.++++.|+ ...|+||+.++|..+=-++|..
T Consensus 102 ~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--p~~~~~i~~~----~~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 102 HEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--PDPPSSIAFL----GNKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred cccceEEEEEECCEEEEEEEECCcccccceeEEEEc--CCCcEEEEEe----CCEEEEEeCCceEEEecCCCCc
Confidence 466678899999999999997753211023333433 2668899888 4578899999987765565554
No 100
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=70.56 E-value=30 Score=36.89 Aligned_cols=83 Identities=17% Similarity=0.248 Sum_probs=63.5
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
...+.+-|+-..++..-..--+=++|+.+..-|.+.+|+|..-+.= .+... +. -||-...+
T Consensus 238 V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V-~~~~~---------------dp---qvit~S~D 298 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV-MCQPT---------------DP---QVITGSHD 298 (460)
T ss_pred eEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE-EeecC---------------CC---ceEEecCC
Confidence 4568888988888886555556679999999999999999854432 22111 11 35888899
Q ss_pred CeEEEeecCCCCeEEEEEecCC
Q 012917 390 GIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+.|.+||++.|+-..+.+-+|-
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkk 320 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKK 320 (460)
T ss_pred ceEEEeeeccCceeEeeecccc
Confidence 9999999999999999887764
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.42 E-value=19 Score=38.98 Aligned_cols=264 Identities=19% Similarity=0.245 Sum_probs=159.7
Q ss_pred ecccccccCC-CCCcccCCCeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEE
Q 012917 15 CTDLSDLGAG-KEGWLVNDPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRAL 93 (453)
Q Consensus 15 ~~~~~~~g~~-~~~wl~~~~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I 93 (453)
|.|-..+-.- +|.|+- ..|+.|.+||-|-...-++. |.-.....++..-+|-- -..-|..|.|=| +|...+
T Consensus 214 ~qt~qil~~htdEVWfl-----~FS~nGkyLAsaSkD~Taii-w~v~~d~~~kl~~tlvg-h~~~V~yi~wSP-DdryLl 285 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFL-----QFSHNGKYLASASKDSTAII-WIVVYDVHFKLKKTLVG-HSQPVSYIMWSP-DDRYLL 285 (519)
T ss_pred chhhhhHhhCCCcEEEE-----EEcCCCeeEeeccCCceEEE-EEEecCcceeeeeeeec-ccCceEEEEECC-CCCeEE
Confidence 4555555555 888883 47899999999887755552 21111122555444422 235588888877 477899
Q ss_pred EEeccccEEEEEe-cCCcEeee--cccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhc
Q 012917 94 AVGTSRGYFLVYD-LKGDLVHR--QLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDS 170 (453)
Q Consensus 94 ~VG~ssG~vrfyt-e~G~LL~s--Q~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~ 170 (453)
+.|++.- ++..+ .+|++.+. +- |. - +-.=+.=||++.-.|-|..= |.|
T Consensus 286 aCg~~e~-~~lwDv~tgd~~~~y~~~-~~---~----------------S~~sc~W~pDg~~~V~Gs~d----r~i---- 336 (519)
T KOG0293|consen 286 ACGFDEV-LSLWDVDTGDLRHLYPSG-LG---F----------------SVSSCAWCPDGFRFVTGSPD----RTI---- 336 (519)
T ss_pred ecCchHh-eeeccCCcchhhhhcccC-cC---C----------------CcceeEEccCCceeEecCCC----CcE----
Confidence 9999877 77777 55776542 11 10 1 11123344444333333221 111
Q ss_pred cccccCCCCccCCCccccCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCC
Q 012917 171 NSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDR 250 (453)
Q Consensus 171 ~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~ 250 (453)
-.|+ ..++ + ..+|.-.+.-.+.|.++.- .| ..+++++.+|-+..|..+.-.
T Consensus 337 --~~wd-------lDgn------~-~~~W~gvr~~~v~dlait~------------Dg-k~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 337 --IMWD-------LDGN------I-LGNWEGVRDPKVHDLAITY------------DG-KYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred --EEec-------CCcc------h-hhcccccccceeEEEEEcC------------CC-cEEEEEecccceeeechhhhh
Confidence 0221 1111 1 3456665555677777642 11 125777888888777544211
Q ss_pred CcchhhhhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCc
Q 012917 251 SRSLVGAILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGR 330 (453)
Q Consensus 251 ~~s~~~a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGR 330 (453)
-. .+....-.+.++++|-+|+||.+.=.---
T Consensus 388 dr-------------------------------------------------~lise~~~its~~iS~d~k~~LvnL~~qe 418 (519)
T KOG0293|consen 388 DR-------------------------------------------------GLISEEQPITSFSISKDGKLALVNLQDQE 418 (519)
T ss_pred hh-------------------------------------------------ccccccCceeEEEEcCCCcEEEEEcccCe
Confidence 00 01111233678999999999999877778
Q ss_pred EEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 331 ILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 331 V~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
|-|+|++...+||-++|++--.+-=-.++...+ + -||-...-++-|-||+-.+|.-++...-+
T Consensus 419 i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~-------------~---~fiaSGSED~kvyIWhr~sgkll~~LsGH 481 (519)
T KOG0293|consen 419 IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN-------------D---KFIASGSEDSKVYIWHRISGKLLAVLSGH 481 (519)
T ss_pred eEEeecchhhHHHHhhcccccceEEEeccCCCC-------------c---ceEEecCCCceEEEEEccCCceeEeecCC
Confidence 999999999999999999975433222222211 1 26777888999999999999999988744
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.30 E-value=31 Score=37.93 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+.-++.+..-+..+|++++.|...+..+|.++|...-..+.-..+++-|==+-...+=. + . .|
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q--~--------------~-lL 359 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ--S--------------G-LL 359 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc--c--------------C-ce
Confidence 66677888899999999999999999999999996655555555666654332222100 0 0 12
Q ss_pred EEEc-CCCCeEEEeecCCCCeEEEEEecCC-eEEecc
Q 012917 383 AIHA-PRKGIIEVWQMRTGPRLLTIQCAKG-SKILQP 417 (453)
Q Consensus 383 vIya-prRg~lEVW~~~~G~RV~a~~v~~~-~~Ll~~ 417 (453)
++=. -.++.|.+|++.+|.++-.+..+-. |-|+..
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Ws 396 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWS 396 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEc
Confidence 2211 2367889999999999988887765 555554
No 103
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=70.30 E-value=9.3 Score=38.60 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=39.8
Q ss_pred CcEEEEEEEEe-----CCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEee
Q 012917 77 EYITAIEWLVF-----EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 77 e~ITs~~~lp~-----~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~ 129 (453)
..||++.+|.- ....|++|||-+|.|.+.+.++--++.|.-=+++-..|.+-.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G 234 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSG 234 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEe
Confidence 45777777777 345999999999999999999999998864344333555443
No 104
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=69.75 E-value=8.8 Score=23.02 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=26.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLD 335 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD 335 (453)
+......+..++..|+++++++....|.|.++|
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 444556788999999989998888888877664
No 105
>PRK00178 tolB translocation protein TolB; Provisional
Probab=69.66 E-value=1e+02 Score=32.03 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=30.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRL 344 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRm 344 (453)
+....+...+...||+|+.+|. ++.-| +|.++|+.++..-++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l 238 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI 238 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc
Confidence 4445556788899999976655 55444 599999999876654
No 106
>PRK00178 tolB translocation protein TolB; Provisional
Probab=69.35 E-value=68 Score=33.37 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred eeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEecc
Q 012917 310 GERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 347 (453)
Q Consensus 310 ~~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKG 347 (453)
......||+|+.+|. .+..| +|.++|+.++.+.++.++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC
Confidence 345788999987664 44445 799999999998887653
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=69.10 E-value=10 Score=41.78 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=39.8
Q ss_pred EEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEee
Q 012917 79 ITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 79 ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~ 129 (453)
|-|+-+-|-.|| ++||+.+++|-+-+.+|--=+--.+|++=|++||+-.
T Consensus 595 IfSLg~cP~~dW--lavGMens~vevlh~skp~kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 595 IFSLGYCPTGDW--LAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY 643 (705)
T ss_pred heecccCCCccc--eeeecccCcEEEEecCCccceeecccccEEEEEEecc
Confidence 444444455788 8999999999999999887777789999999999654
No 108
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=68.92 E-value=13 Score=39.03 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecC
Q 012917 319 GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 398 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~ 398 (453)
+-+.|++-.+|-|-+||+.++....=..|+=+| | + ..+.-|.+ .-||+-+.++..|.+|++|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s----I----N------eik~~p~~----~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS----I----N------EIKFHPDR----PQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCcc----c----h------hhhcCCCC----CcEEEEecCCceEEEEecc
Confidence 457788889999999999999988777666542 1 1 11112222 2489999999999999999
Q ss_pred CCCeEEEEEecCC
Q 012917 399 TGPRLLTIQCAKG 411 (453)
Q Consensus 399 ~G~RV~a~~v~~~ 411 (453)
+.-+|+.|---.|
T Consensus 167 ~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 167 TDVCVAVFGGVEG 179 (385)
T ss_pred CCeEEEEeccccc
Confidence 9999999874433
No 109
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=68.83 E-value=18 Score=41.54 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
++-.|+-+++.+..+..+-.|...|..--.|-|+|+|+..-..+.=.+|+-|+=....-.. + +
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~--------------~- 161 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--G--------------D- 161 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--C--------------C-
Confidence 3345888899999999999999999998999999999999999999999999744333221 1 1
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
-++|-..+++.|.+|++.+-.+..+.--+
T Consensus 162 --~~lvS~sKDs~iK~WdL~tqhCf~Thvd~ 190 (888)
T KOG0306|consen 162 --SFLVSVSKDSMIKFWDLETQHCFETHVDH 190 (888)
T ss_pred --eEEEEeccCceEEEEecccceeeeEEecc
Confidence 16677788888888888776666554433
No 110
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=68.82 E-value=4.9 Score=42.44 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCcEEEEEEEEe-CCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEee
Q 012917 76 SEYITAIEWLVF-EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 76 ~e~ITs~~~lp~-~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~ 129 (453)
.+.+-|++.+|+ .....-|+|.-+|.|.+|+-.-..++.++-|+++|.+|+.-.
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN 337 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence 356677777777 555678999999999999999999999999999999999654
No 111
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=68.62 E-value=12 Score=39.78 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=65.7
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe-cccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW-KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
..+++|||.+.+.++|-.+.|=+.-..+-.+|.-| =|+++ |+...+-.+. ++.+.+.-+
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e----FVS~isl~~~----------------~~LlS~sGD 214 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE----FVSTISLTDN----------------YLLLSGSGD 214 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh----heeeeeeccC----------------ceeeecCCC
Confidence 45799999999999999999998888888888755 46777 7765544321 467899999
Q ss_pred CeEEEeecCCCCeEEEEEecC
Q 012917 390 GIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~v~~ 410 (453)
+.|.+|+.++|..+.++.+..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred CcEEEEecccCCcccccchhH
Confidence 999999999999999998654
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.60 E-value=38 Score=35.49 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=76.0
Q ss_pred CccccCCCCeeeEEEECCCC---CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917 300 LTCLKDHPRKGERLTLSPSG---SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~---~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
+..|.++.-.+..+..+|+- .|.+++| .|-|+++|+..=..+.-.|++-.+ +-.|.+... +
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sd-DG~i~iw~~~~W~~~~slK~H~~~-Vt~lsiHPS------------~-- 139 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSD-DGHIIIWRVGSWELLKSLKAHKGQ-VTDLSIHPS------------G-- 139 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecC-CCcEEEEEcCCeEEeeeecccccc-cceeEecCC------------C--
Confidence 34566777788888888875 4555554 599999999999999999999876 777766432 1
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEe
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll 415 (453)
-|++-..+++.|..|++=+|++-+..+...-..++
T Consensus 140 ----KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v 174 (362)
T KOG0294|consen 140 ----KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLV 174 (362)
T ss_pred ----ceEEEEcCCceeeeehhhcCccceeeccCCcceee
Confidence 27888889999999999999999999888766654
No 113
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=68.17 E-value=44 Score=34.84 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=63.4
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~-ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
-++-.+-++..+.-+|+|.++|..-..--|+|+++-.-+ =.-..||+-.|=+.=--+ .| ++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~---~d-----------~s---- 103 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM---RD-----------GS---- 103 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec---cC-----------CC----
Confidence 477888999999999999999998888888888753322 122345666654332221 11 11
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
-+.-+.-+-.|-+||+++|+|+.-++.+.++
T Consensus 104 -~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~ 134 (338)
T KOG0265|consen 104 -HILSCGTDKTVRGWDAETGKRIRKHKGHTSF 134 (338)
T ss_pred -EEEEecCCceEEEEecccceeeehhccccce
Confidence 3356677888999999999999888766443
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=68.13 E-value=22 Score=40.18 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-----Eecc-cccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-----mWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+-++.+|.-+|++.-.|..-..|+|.++|+..+.-+. +-+- -|+.-|.|-......
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd------------------ 215 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD------------------ 215 (691)
T ss_pred cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec------------------
Confidence 4557788888999977888888999999999998887 4443 348889997665432
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
-.+|-.=.+|.|.+|+-++|..+-++.+..
T Consensus 216 ~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred CcEEEecCCceEEEEcccCcchhhhhhhhh
Confidence 155778889999999999998877776654
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=10 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=36.6
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccc
Q 012917 311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 349 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyR 349 (453)
.+-+-+|+++++.+++..|||.++++.+|..+-.|+|-+
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 577889999999999999999999999999999999973
No 116
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=67.32 E-value=17 Score=39.08 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=68.3
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
|.-+-+++.++.-||||...|+.-+.+-+=++|+....-+...-++++ =+ ++..++|.. . ++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n----lV----------S~Vk~~p~~---g-~f 402 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN----LV----------SQVKYSPQE---G-YF 402 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc----hh----------hheEecccC---C-eE
Confidence 555678899999999999999988888888899998888888877777 11 122333321 2 45
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
..-+..++.+.||+.+++..+-+..-+.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCc
Confidence 6788999999999999988776665443
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.70 E-value=46 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=42.4
Q ss_pred EEEEEeCCcEEEEEeccccEEEEEecC-CcEeeecccCccceeEEEEeecc
Q 012917 82 IEWLVFEEMRALAVGTSRGYFLVYDLK-GDLVHRQLIHPGRILKLRVRGSR 131 (453)
Q Consensus 82 ~~~lp~~dw~~I~VG~ssG~vrfyte~-G~LL~sQ~lh~~pV~~ik~r~~~ 131 (453)
+.|+++.+-...+||-+++.+++++.+ +.-++.-.-|+.+|..|..-+.+
T Consensus 211 ~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 211 ILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred ceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecC
Confidence 456666677889999999999999977 88888889999999999966654
No 118
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=65.47 E-value=17 Score=41.44 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=34.7
Q ss_pred eeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 309 KGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 309 ~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
.+..|+-.|+| +|+.++|+ |++++|+..|..+.-.||+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~--rlliyD~ndG~llqtLKgHKD 54 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS--RLLVYDTSDGTLLQPLKGHKD 54 (1081)
T ss_pred chheeEECCCCceEEEecCC--EEEEEeCCCcccccccccccc
Confidence 45678999999 56666665 999999999999999999999
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=65.47 E-value=12 Score=40.63 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=51.3
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc-cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....|+.+|+|.|.+..---|-++||.+.+|.++.+|-+ |++-.|- .-.+. .. ..|-+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL-----~fs~d-------------gs--~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL-----KFSDD-------------GS--HIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE-----EEeCC-------------Cc--EEEecC
Confidence 356788899999999988899999999999999999954 5554432 11111 11 447888
Q ss_pred CCCeEEEeec
Q 012917 388 RKGIIEVWQM 397 (453)
Q Consensus 388 rRg~lEVW~~ 397 (453)
++|.|-||.+
T Consensus 143 kDg~V~vW~l 152 (476)
T KOG0646|consen 143 KDGAVLVWLL 152 (476)
T ss_pred CCccEEEEEE
Confidence 8888888876
No 120
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=65.31 E-value=66 Score=34.29 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=54.8
Q ss_pred eeEEEECCCCCEEEEE--cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 310 GERLTLSPSGSLAAIT--DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 310 ~~~i~lsP~~~laa~t--DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
...+++++.+.|.|.- -+.|-|+|+|+.+..-+-+...+++ =+.+..-.. +.. |.--|.
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs~-------------~G~--llATAS 192 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFSP-------------DGT--LLATAS 192 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEECC-------------CCC--EEEEec
Confidence 3344444556788873 3489999999999999998877766 233322211 111 334455
Q ss_pred CCC-eEEEeecCCCCeEEEEEecC
Q 012917 388 RKG-IIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 388 rRg-~lEVW~~~~G~RV~a~~v~~ 410 (453)
-+| +|.|+++.+|+|++-|+=|-
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCc
Confidence 555 56899999999999998543
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=65.10 E-value=60 Score=34.23 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=36.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 343 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR 343 (453)
|.-+-|-+.+||=||+|++..++...=-|.|+|+..|.+++
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 44556889999999999999998888899999999998876
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.57 E-value=1.7e+02 Score=29.83 Aligned_cols=129 Identities=10% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCCeeeEEEECCCCCEEEEEc-CCCcEEEEEcCC-ceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITD-SLGRILLLDTQA-LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~~-~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
....-.+|+++|+++++.++. .-|.|.++++.. |.+-..=. -+........ .. +....+..=+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~--------~~~~~g~g~~---~~----rq~~~h~H~v 149 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ--------TVRHEGSGPN---PD----RQEGPHPHQV 149 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE--------EEESEEEESS---TT----TTSSTCEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee--------ecccCCCCCc---cc----ccccccceeE
Confidence 345667899999999999987 589999999987 55554321 0000000000 00 0111122446
Q ss_pred EEcCCCCeEEEeecCCCCeEEEEEecCCe-EEecccc-c-cCccC-CCCCCcC--cEEEEEeCCCCceEEEec
Q 012917 384 IHAPRKGIIEVWQMRTGPRLLTIQCAKGS-KILQPTY-R-FGSSM-ASSPYVP--LEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 384 IyaprRg~lEVW~~~~G~RV~a~~v~~~~-~Ll~~~~-~-~~g~~-~~~~~~~--~~~~lld~~~g~l~~i~~ 450 (453)
.+.|....|-|=++- ..||..+.+..+. .|-.... . ..|++ ++--|+| ..+|+++..++.|.+++.
T Consensus 150 ~~~pdg~~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp EE-TTSSEEEEEETT-TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEEecC-CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 777777777777774 5788888887765 3322111 1 11111 1212444 577888877777776653
No 123
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=64.53 E-value=5.3 Score=42.22 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=57.2
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+.|.-++|.+. |+--+|++++...+.--|=|+|+..|..+||..|+-| -+.+.--.++
T Consensus 354 Rtl~gHkRGIA--ClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe----LvRciRFd~k---------------- 411 (499)
T KOG0281|consen 354 RTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVRCIRFDNK---------------- 411 (499)
T ss_pred hhhhcccccce--ehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH----hhhheeecCc----------------
Confidence 34777777664 3446899999988888999999999999999999988 3332211111
Q ss_pred EEEEEcCCCCeEEEeecCCC
Q 012917 381 CLAIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G 400 (453)
-++....+|.|+||+++.+
T Consensus 412 -rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 412 -RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -eeeeccccceEEEEecccc
Confidence 2355566999999999985
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.44 E-value=1.6e+02 Score=30.11 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEECCCCCEEEEE-cCCCcEEEEEcC
Q 012917 311 ERLTLSPSGSLAAIT-DSLGRILLLDTQ 337 (453)
Q Consensus 311 ~~i~lsP~~~laa~t-DslGRV~LiD~~ 337 (453)
.++.++|+|+++-++ ..-+.|.++++.
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 357899999887664 666789999988
No 125
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.73 E-value=48 Score=39.78 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC------CcEeeecccCccceeEEEEeeccC
Q 012917 75 ASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK------GDLVHRQLIHPGRILKLRVRGSRR 132 (453)
Q Consensus 75 ~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~------G~LL~sQ~lh~~pV~~ik~r~~~~ 132 (453)
.+.+|||+.+=- ..-..||+||.+|.||+|+.. +....+|.=...||+.+.+|....
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 457788775522 234689999999999999932 444555544344599999888664
No 126
>PRK05137 tolB translocation protein TolB; Provisional
Probab=61.56 E-value=1.2e+02 Score=31.93 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=29.3
Q ss_pred eeeEEEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEecc
Q 012917 309 KGERLTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKG 347 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKG 347 (453)
.......+|+|+.++. +|..| +|.++|+..+.+-|+-.+
T Consensus 291 ~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~ 332 (435)
T PRK05137 291 IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG 332 (435)
T ss_pred ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC
Confidence 3445788999976655 66665 799999999888887653
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.45 E-value=14 Score=42.07 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=55.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+.-+.|....+.++|+|+|.|..-..--|=++|+.+|.++.-+|++-. +..-++. +..=||
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~------------------hp~e~L 210 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEF------------------HPLEVL 210 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-ccccccc------------------Cchhhh
Confidence 444677888999999999999965566777888888888888876432 2222221 111144
Q ss_pred EEEcCCCCeEEEeecCCCCe
Q 012917 383 AIHAPRKGIIEVWQMRTGPR 402 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~R 402 (453)
.=-...++++.+|++.+..-
T Consensus 211 la~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred hccCCCCceeeeeccceeEE
Confidence 44556689999999985443
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=61.35 E-value=61 Score=33.28 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=58.6
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEe
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLV 112 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL 112 (453)
++-+|++|++|.+|+++-+.|. +...=+.++-. + -...|+|..-= |+--+.|.|=.++|++-|+ .+|+-+
T Consensus 189 SlEvs~dG~ilTia~gssV~Fw--daksf~~lKs~-k----~P~nV~SASL~--P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFW--DAKSFGLLKSY-K----MPCNVESASLH--PKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred ceeeccCCCEEEEecCceeEEe--ccccccceeec-c----Ccccccccccc--CCCceEEecCcceEEEEEeccCCcee
Confidence 4667999999999999988772 11110001110 1 12445554211 4557888999999999999 779888
Q ss_pred eec-ccCccceeEEEEee
Q 012917 113 HRQ-LIHPGRILKLRVRG 129 (453)
Q Consensus 113 ~sQ-~lh~~pV~~ik~r~ 129 (453)
=+- -=|+.||..+|+-.
T Consensus 260 ~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred eecccCCCCceEEEEECC
Confidence 772 55789999999654
No 129
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=60.59 E-value=24 Score=37.28 Aligned_cols=116 Identities=19% Similarity=0.339 Sum_probs=66.9
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
-+.||+|+|+|+.... |+++=|+.+.+++.++-=- | ++..|+=.. +.. |..--+-+|+.|
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-d-ki~yieW~a----------------ds~-~ilC~~yk~~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-D-KIVYIEWKA----------------DSC-HILCVAYKDPKV 73 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-H-Hhhheeeec----------------cce-eeeeeeeccceE
Confidence 4789999999996544 9999999999998865220 0 111121111 111 333345578899
Q ss_pred EEeecCCCCeEEEEEec----------CCeEEeccccccCc-------cCC-----CCCCcCcEEEEEeCCCCceEEEe
Q 012917 393 EVWQMRTGPRLLTIQCA----------KGSKILQPTYRFGS-------SMA-----SSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 393 EVW~~~~G~RV~a~~v~----------~~~~Ll~~~~~~~g-------~~~-----~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
.||++-+-.=-+.+..+ +.+|=|-.+..|-. ++. -.+.+..+.|=|+| ||+...|-
T Consensus 74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~ 151 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAIL 151 (447)
T ss_pred EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeee
Confidence 99998765544444433 44433333333322 111 11223478888888 68887663
No 130
>PRK04792 tolB translocation protein TolB; Provisional
Probab=59.54 E-value=1.5e+02 Score=31.65 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=29.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEE-cCCC--cEEEEEcCCceEEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAIT-DSLG--RILLLDTQALVVVRL 344 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~t-DslG--RV~LiD~~~~~ivRm 344 (453)
+.+.+....+...||+|+.+|.+ +.-| +|.++|+.++...++
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l 257 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV 257 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe
Confidence 33444556678999999877664 4333 699999998876554
No 131
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=59.24 E-value=19 Score=36.04 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=34.3
Q ss_pred cccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEe--ccccc
Q 012917 302 CLKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLW--KGYRD 350 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmW--KGyRd 350 (453)
.|++..++...|+.+|+ ++|+|++|.-|.|+-+|+. |.++|-+ .|..|
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D 66 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGD 66 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SS
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCC
Confidence 36777788999999995 7899999999999999985 7788855 45555
No 132
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.29 E-value=34 Score=39.35 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=52.5
Q ss_pred CeeeeccCcceeeeeecceEEE--E--eecCCCC-----CceeEee-cC-----CCCCCCcEEEEEEEEe-CCcEEEEEe
Q 012917 33 PNLLCALDMHTIALANRYQTVI--I--NWADPEG-----LVAKIRP-EL-----SPIASEYITAIEWLVF-EEMRALAVG 96 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~--~--~w~~~~~-----~~~~~~g-~l-----~~~~~e~ITs~~~lp~-~dw~~I~VG 96 (453)
..+.+||+|++||++-.+-++| + +|...+. ..+.++- .+ ....+-.|.-+.|=|. .....++|=
T Consensus 88 ~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 88 HQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 5688999999999876664444 3 4865541 2244432 11 2223467889999999 346788999
Q ss_pred ccccEEEEEec
Q 012917 97 TSRGYFLVYDL 107 (453)
Q Consensus 97 ~ssG~vrfyte 107 (453)
|+++.+|+|+.
T Consensus 168 tsdn~lR~y~~ 178 (717)
T PF10168_consen 168 TSDNTLRLYDI 178 (717)
T ss_pred ecCCEEEEEec
Confidence 99999999997
No 133
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=58.26 E-value=24 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=27.0
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCce
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALV 340 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ 340 (453)
+..++-||+..|.|+...-|+|+|..+ +++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 779999999999999999999999998 444
No 134
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.19 E-value=32 Score=39.03 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=68.0
Q ss_pred CCCccccCCCCeeeEEEE-CCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCC-
Q 012917 298 SPLTCLKDHPRKGERLTL-SPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK- 375 (453)
Q Consensus 298 ~pl~~l~D~~R~~~~i~l-sP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k- 375 (453)
..+.+|-+++-=+.+|+. .++.-++|..--.++|.|+|+.+|.. +.- |.+-.+.+ ++...+|..
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~-~l~-----~s~n~~t~--------~sl~sG~k~s 173 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA-TLV-----ASFNNVTV--------NSLGSGPKDS 173 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch-hhh-----hhcccccc--------ccCCCCCccc
Confidence 345668888888999999 88999999999999999999999966 000 01111111 111111111
Q ss_pred ------CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 376 ------SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 376 ------~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+ -.++++-..--+.|.+|+.+++.|+.-+..+.
T Consensus 174 iYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHT 213 (735)
T KOG0308|consen 174 IYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT 213 (735)
T ss_pred eeeeecCC-cceEEEecCcccceEEeccccccceeeeeccc
Confidence 11 22677888889999999999999998888554
No 135
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.90 E-value=17 Score=38.82 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=41.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~ 358 (453)
..+.++.+|++|+++|+.-..|-|.++|+.+++.+..- +.|.-.+|.-
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v---k~aH~~~VT~ 329 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV---KEAHLGFVTG 329 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee---hhhheeeeee
Confidence 35789999999999999999999999999999998887 4677776643
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=57.69 E-value=85 Score=35.96 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=69.4
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.|.-+.-....+++=|++.++ .++|.|-|.++|+ +|.+|+-.-|++. ++-...... ++ -
T Consensus 174 tf~gHtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~-~ge~l~~~~ghtn----~vYsis~~~------------~~---~ 232 (745)
T KOG0301|consen 174 TFSGHTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL-DGEVLLEMHGHTN----FVYSISMAL------------SD---G 232 (745)
T ss_pred hhccchhheeeeEEecCCCeE-eecCCceEEEEec-cCceeeeeeccce----EEEEEEecC------------CC---C
Confidence 344455556677777776654 5689999999999 6666666679998 664432111 11 2
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC----CeEEeccccccCcc
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK----GSKILQPTYRFGSS 424 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~----~~~Ll~~~~~~~g~ 424 (453)
+++-..-++.|+||... ..+..++.+. .++.++++--.-|+
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEec
Confidence 78999999999999985 8888888776 35555555555553
No 137
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=56.05 E-value=31 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCCEEEEEc-CCCcEEEEEcCCceEEEEe
Q 012917 317 PSGSLAAITD-SLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 317 P~~~laa~tD-slGRV~LiD~~~~~ivRmW 345 (453)
|+++.+-+++ .-+.|.+||+.++.+++-.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 6776555654 5889999999998887654
No 138
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=55.85 E-value=71 Score=34.26 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=60.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCc---eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~---~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
...+|..+|..+|+|+.-+.--+-|+|-.++ .+..-+-|+-. |++...-.+ ... |+.+.
T Consensus 302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n----wVssvkwsp------------~~~--~~~~S 363 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN----WVSSVKWSP------------TNE--FQLVS 363 (423)
T ss_pred ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh----hhhheecCC------------CCc--eEEEE
Confidence 4567889999999999888888889998764 45567888888 987643221 112 67799
Q ss_pred cCCCCeEEEeecCCCC-eEEEEE
Q 012917 386 APRKGIIEVWQMRTGP-RLLTIQ 407 (453)
Q Consensus 386 aprRg~lEVW~~~~G~-RV~a~~ 407 (453)
...+|.+.+||+|.-. -++.+.
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred EecCCeEEEEEeccCCCcceeec
Confidence 9999999999999755 444444
No 139
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=55.68 E-value=33 Score=38.08 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
..-.+..+.++ +.+....-..|.|.++|+.++..++-.+|+-. |+....... + -.++-
T Consensus 330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~----~V~sl~~~~-----------~-----~~~~S 387 (537)
T KOG0274|consen 330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG----RVYSLIVDS-----------E-----NRLLS 387 (537)
T ss_pred ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc----eEEEEEecC-----------c-----ceEEe
Confidence 44446666676 55555544445999999999999999999766 665532211 0 13456
Q ss_pred cCCCCeEEEeecCCC-CeEEEEEecCC
Q 012917 386 APRKGIIEVWQMRTG-PRLLTIQCAKG 411 (453)
Q Consensus 386 aprRg~lEVW~~~~G-~RV~a~~v~~~ 411 (453)
..-++.|++|++.++ +++.+.+-+..
T Consensus 388 gs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 388 GSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred eeeccceEeecCCchhhhhhhhcCCcc
Confidence 667899999999999 88888886654
No 140
>PRK03629 tolB translocation protein TolB; Provisional
Probab=55.59 E-value=72 Score=33.76 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=33.9
Q ss_pred eeeEEEECCCCCEEEEEc---CCCcEEEEEcCCceEEEEecccccceeeE
Q 012917 309 KGERLTLSPSGSLAAITD---SLGRILLLDTQALVVVRLWKGYRDASCVF 355 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tD---slGRV~LiD~~~~~ivRmWKGyRdAqc~W 355 (453)
.......||+|++++.+. ....|.++|+.++...++-.++.+....|
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~ 381 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSI 381 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceE
Confidence 345688999998887752 33568999999998877776665544444
No 141
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=55.52 E-value=1.2e+02 Score=30.89 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917 318 SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~ 397 (453)
.+..+.+++..|+|..+|..+|.++ |+-.+- ... ....|.-... .++-.-+.|.|-+++.
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~--W~~~~~---------~~~------~~ssp~i~g~---~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSEL--WKNDEL---------KYR------QLTAPAVVGG---YLVVGDFEGYLHWLSR 337 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEE--Eccccc---------cCC------ccccCEEECC---EEEEEeCCCEEEEEEC
Confidence 3455556677899999999999864 652110 000 0000110111 1222357899999999
Q ss_pred CCCCeEEEEEecCCeEEeccccccCccCCCCC-CcCcEEEEEeCCCCceEEE
Q 012917 398 RTGPRLLTIQCAKGSKILQPTYRFGSSMASSP-YVPLEVFLLNGDSGQLSVL 448 (453)
Q Consensus 398 ~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~-~~~~~~~lld~~~g~l~~i 448 (453)
++|+.+..+.++.+. ..++| ....++|+-. .+|.|..|
T Consensus 338 ~tG~~~~~~~~~~~~------------~~~sp~~~~~~l~v~~-~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLKTDGSG------------IASPPVVVGDGLLVQT-RDGDLYAF 376 (377)
T ss_pred CCCCEEEEEEcCCCc------------cccCCEEECCEEEEEe-CCceEEEe
Confidence 999999887754321 12334 3445555554 48988765
No 142
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=55.41 E-value=2.1e+02 Score=30.33 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=64.2
Q ss_pred eeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCC---CccEEEEE
Q 012917 309 KGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS---DYCLCLAI 384 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~---~~~l~LvI 384 (453)
+....-++|+|+++.++|. .-||.++|+..|..-..= .+ .+ +...+||.- +-.-|.-+
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~----~~---~v-----------~~G~GPRHi~FHpn~k~aY~ 207 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD----PA---EV-----------KPGAGPRHIVFHPNGKYAYL 207 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc----cc---cc-----------CCCCCcceEEEcCCCcEEEE
Confidence 3556788999999999884 579999999977653311 00 00 011112210 00001111
Q ss_pred EcCCCCeEEEeecCC--------------------CCeEEEEEecCCeEEeccccccCccCCCCCCcCcEEEEEeCCCCc
Q 012917 385 HAPRKGIIEVWQMRT--------------------GPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQ 444 (453)
Q Consensus 385 yaprRg~lEVW~~~~--------------------G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~ 444 (453)
=--..+.|+||.... -+..+++++.+.+|.||.+-+-- .-.-+|=+|+++|.
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~--------dsI~~f~V~~~~g~ 279 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH--------DSIAVFSVDPDGGK 279 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC--------CeEEEEEEcCCCCE
Confidence 123346666666554 24677888888888888754322 23455666776666
Q ss_pred eEEE
Q 012917 445 LSVL 448 (453)
Q Consensus 445 l~~i 448 (453)
|..+
T Consensus 280 L~~~ 283 (346)
T COG2706 280 LELV 283 (346)
T ss_pred EEEE
Confidence 5543
No 143
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.33 E-value=37 Score=36.77 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=38.9
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec---ccccceeeEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK---GYRDASCVFME 357 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK---GyRdAqc~Wi~ 357 (453)
--..-|.-|||.++..++-..--+.|+|+.+|...++++ |.---.|+|..
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 345678889988776665444449999999999999987 46777899984
No 144
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=54.15 E-value=23 Score=23.70 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCcEEEEEEEEeCCcEEEEEeccccEEEEEe
Q 012917 76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD 106 (453)
Q Consensus 76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt 106 (453)
...|+++.|-|- -..++.|-.+|.|++|+
T Consensus 11 ~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 466888888765 56888999999999985
No 145
>PRK05137 tolB translocation protein TolB; Provisional
Probab=53.99 E-value=1.8e+02 Score=30.56 Aligned_cols=42 Identities=19% Similarity=0.077 Sum_probs=31.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEE-c--CCCcEEEEEcCCceEEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAIT-D--SLGRILLLDTQALVVVRL 344 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~t-D--slGRV~LiD~~~~~ivRm 344 (453)
|.++.+...+...||+|+.+|.+ + .-..|.++|+.++...++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l 241 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV 241 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe
Confidence 55666778889999999866664 3 346899999999876443
No 146
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.82 E-value=1.9e+02 Score=29.81 Aligned_cols=126 Identities=19% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCeeeEEEECCCCCEEEEEcCC-CcEEEEEcCCceEEEEecccccceeeEEEEEec-c-cccccccccCCCCCCccEEEE
Q 012917 307 PRKGERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-K-DAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~-~-~~~~~~~~~~~~k~~~~l~Lv 383 (453)
-..-..|+.||+++.+=++|+. +||.-+|+.. ..+=++-| -.++..... . +.+ + ..-.+..++ +
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~---~~g~~~~~---~~~~~~~~~~G~PDG---~---~vDadG~lw-~ 228 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP---ATGPIGGR---RGFVDFDEEPGLPDG---M---AVDADGNLW-V 228 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCc---ccCccCCc---ceEEEccCCCCCCCc---e---EEeCCCCEE-E
Confidence 4556679999999999999998 8888888875 22333333 123332211 0 000 0 000122322 1
Q ss_pred EEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCC------CCCCcCcEEEEEeCCCCceEEEe
Q 012917 384 IHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMA------SSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 384 IyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~------~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
.....-+.|-+|+.+ |+.+..+.++. -..+++.|.|... +......+-.--||-.|.|..+.
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~~~~~~~~~~~~~~G~lf~~~ 296 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSARSGMSRMLTADPLGGGLFSLR 296 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEecCCCCCccccccccCceEEEEe
Confidence 222222389999998 99999999884 1123444555211 11111112222566667676654
No 147
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=53.50 E-value=50 Score=35.65 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=36.1
Q ss_pred CCccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCc
Q 012917 299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQAL 339 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~ 339 (453)
+++.+...+-++..+.=||.. +..|.+-..||++++|+.+-
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 667899999999999999965 88888899999999999763
No 148
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.88 E-value=86 Score=33.00 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=33.3
Q ss_pred eeEEEECCCCCEEEEEcCC-C--cEEEEEcCCceEEEEecccccceeeE
Q 012917 310 GERLTLSPSGSLAAITDSL-G--RILLLDTQALVVVRLWKGYRDASCVF 355 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDsl-G--RV~LiD~~~~~ivRmWKGyRdAqc~W 355 (453)
......||+|+++|.+..- | +|.++|+.++...++-.|..+....|
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~ 386 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSF 386 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceE
Confidence 3468999999988875432 2 69999999998777766655544444
No 149
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.86 E-value=19 Score=39.53 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=32.7
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm 344 (453)
-.++++.++|+|++++++..-+-++++|+.+|.+--+
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 3578999999999999999999999999999986443
No 150
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=52.51 E-value=1.7e+02 Score=30.26 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=56.4
Q ss_pred CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917 320 SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 320 ~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~ 399 (453)
..+-+.+..|+|+.+|..+|.+ +|+=-+-. .+. ..+|.-.+. .| +..-.+|.|.+.+.++
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~--~~~-------------~~sp~v~~g--~l-~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE--LWSQSDLL--HRL-------------LTAPVLYNG--YL-VVGDSEGYLHWINRED 354 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE--EEcccccC--CCc-------------ccCCEEECC--EE-EEEeCCCEEEEEECCC
Confidence 3344455668999999999875 56411100 000 001111111 12 2345679999999999
Q ss_pred CCeEEEEEecCCeEEeccccccCccCCCCC-CcCcEEEEEeCCCCceEEEec
Q 012917 400 GPRLLTIQCAKGSKILQPTYRFGSSMASSP-YVPLEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 400 G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~-~~~~~~~lld~~~g~l~~i~~ 450 (453)
|..+...+++.+. + .++| ....++|+-+. +|.|..|.+
T Consensus 355 G~~~~~~~~~~~~--------~----~s~P~~~~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 355 GRFVAQQKVDSSG--------F----LSEPVVADDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred CCEEEEEEcCCCc--------c----eeCCEEECCEEEEEeC-CceEEEEeC
Confidence 9988888764221 1 1334 44567777766 899998875
No 151
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=52.46 E-value=28 Score=35.53 Aligned_cols=54 Identities=24% Similarity=0.181 Sum_probs=48.3
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFM 356 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi 356 (453)
|.-+.|-.=..+.|-+|+|.+++.+.+-+=|+|+.++..+|.|-|++-|-+.|-
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 555668888888999999999999999999999999999999999999888774
No 152
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.46 E-value=1.9e+02 Score=29.43 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecC
Q 012917 319 GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 398 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~ 398 (453)
+..+.+.+..|+|+-+|..+|.++ |+---+.++. ..|.-.+. .++.....|.|-.|+.+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~--W~~~~~~~~~----------------~~p~v~~~---~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKEL--WRAKLSSEVL----------------SPPLVANG---LVVVRTNDGRLTALDAA 163 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEe--eeeccCceee----------------cCCEEECC---EEEEECCCCeEEEEEcC
Confidence 445556667799999999999984 5422222110 00010111 23445678999999999
Q ss_pred CCCeEEEEEecC
Q 012917 399 TGPRLLTIQCAK 410 (453)
Q Consensus 399 ~G~RV~a~~v~~ 410 (453)
+|..+-.++...
T Consensus 164 tG~~~W~~~~~~ 175 (377)
T TIGR03300 164 TGERLWTYSRVT 175 (377)
T ss_pred CCceeeEEccCC
Confidence 999888777543
No 153
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=51.64 E-value=1.8e+02 Score=29.74 Aligned_cols=43 Identities=14% Similarity=0.024 Sum_probs=31.9
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceEEEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRL 344 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDsl---GRV~LiD~~~~~ivRm 344 (453)
.|.+..+...+...||+|+++|.+..- .+|.++|+.++...++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~ 229 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV 229 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe
Confidence 355666667788899999888875432 4799999999866554
No 154
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.27 E-value=64 Score=38.83 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCcEEEEEcCCc---eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917 318 SGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 394 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~---~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV 394 (453)
.|..+|+.=..|+|=++|.... ..|+|||-+-|-+= |.-..- ++. .+-=++-+...|.|++
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~sl------------q~~--G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSL------------QRQ--GLGELVSGSQDGDIQL 1283 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCccc--ceeEEe------------ecC--CCcceeeeccCCeEEE
Confidence 3677777777899999998643 47999998888221 321110 111 1123577888899999
Q ss_pred eecCC---------------CCeEEEEEecCCeEEeccc---------------------cccCccCC----CCCCcCcE
Q 012917 395 WQMRT---------------GPRLLTIQCAKGSKILQPT---------------------YRFGSSMA----SSPYVPLE 434 (453)
Q Consensus 395 W~~~~---------------G~RV~a~~v~~~~~Ll~~~---------------------~~~~g~~~----~~~~~~~~ 434 (453)
|++|. |.-+.++.|++++.++-++ ..|||.-. +-.|||++
T Consensus 1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred EecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 99887 5556666666655555443 35666221 22388887
Q ss_pred EEEEeCCCCceEEE
Q 012917 435 VFLLNGDSGQLSVL 448 (453)
Q Consensus 435 ~~lld~~~g~l~~i 448 (453)
..|--+.+.+.--|
T Consensus 1364 ~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSI 1377 (1387)
T ss_pred HhhhhccCCceEEE
Confidence 77776655544333
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=51.21 E-value=1.8e+02 Score=29.67 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=26.6
Q ss_pred eEEEECCCCCEEEE-EcCC--CcEEEEEcCCceEEEEecc
Q 012917 311 ERLTLSPSGSLAAI-TDSL--GRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 311 ~~i~lsP~~~laa~-tDsl--GRV~LiD~~~~~ivRmWKG 347 (453)
..+..+|+|+.++. .+.- ..|+++|+.++...++.++
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC
Confidence 35778999976654 4443 4699999999887776543
No 156
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=51.05 E-value=19 Score=37.86 Aligned_cols=91 Identities=22% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
-+-+.++-..||+|+|.+...-.|-|=++|-.+|.+-+=.|= .||=.|+.+......-+.+ + |.- .+--
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY--QAqd~fMMmd~aVlci~FS-----R--DsE--MlAs 280 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY--QAQDNFMMMDDAVLCISFS-----R--DSE--MLAS 280 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh--hhhcceeecccceEEEeec-----c--cHH--Hhhc
Confidence 346788899999999999999999999999999987665542 3555566543221000000 0 000 1123
Q ss_pred cCCCCeEEEeecCCCCeEEEEE
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~ 407 (453)
...+|-|+||.+++|.++--|.
T Consensus 281 GsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhh
Confidence 3457999999999998866554
No 157
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=50.86 E-value=15 Score=42.34 Aligned_cols=77 Identities=26% Similarity=0.260 Sum_probs=43.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
++...++|+++++|+.|+.|||+++--..- -=+-+----..|.-.......- ..+.+ .+.-+.|-
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~----~~~~~t~t~lHWH~~~V~~L~f---------S~~G~--~LlSGG~E 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGS----SDDSETCTLLHWHHDEVNSLSF---------SSDGA--YLLSGGRE 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccc----ccccccceEEEecccccceeEE---------ecCCc--eEeecccc
Confidence 677999999999999999999876532220 0000000112365211111000 01222 33567778
Q ss_pred CeEEEeecCCCC
Q 012917 390 GIIEVWQMRTGP 401 (453)
Q Consensus 390 g~lEVW~~~~G~ 401 (453)
|.|=+|++.++.
T Consensus 273 ~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 273 GVLVLWQLETGK 284 (792)
T ss_pred eEEEEEeecCCC
Confidence 999999998864
No 158
>PRK01029 tolB translocation protein TolB; Provisional
Probab=50.19 E-value=96 Score=32.98 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=34.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEE-cC--CCcEEEEEcCCceEEEEeccc
Q 012917 303 LKDHPRKGERLTLSPSGSLAAIT-DS--LGRILLLDTQALVVVRLWKGY 348 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~t-Ds--lGRV~LiD~~~~~ivRmWKGy 348 (453)
+.+..+.......||+|+++|.+ +. ..+|.++|+.++..-++..+.
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~ 370 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP 370 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC
Confidence 33444555678999999877764 43 347999999999998888774
No 159
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=49.99 E-value=45 Score=34.24 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=60.8
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc----eeeEEEEEecccccccccccCCCCCCc
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA----SCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA----qc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
+.-..-+..+|+-.-+|+..|..-..+-|.++++..+..+.-|-+|+.- |..|-+. +.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------------~~ 77 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------------HP 77 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------------CC
Confidence 4444566888999999999999888888888888888555555444432 5555432 11
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
-+|.+ |.-.-.+.+|+.|+|.+++.++-..
T Consensus 78 d~~at--as~dk~ir~wd~r~~k~~~~i~~~~ 107 (313)
T KOG1407|consen 78 DLFAT--ASGDKTIRIWDIRSGKCTARIETKG 107 (313)
T ss_pred cceEE--ecCCceEEEEEeccCcEEEEeeccC
Confidence 22444 4446689999999999999887443
No 160
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=49.82 E-value=99 Score=34.13 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=58.2
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
.-...++.-+|+|+++|+.=..|.|.|+|..+-.-+|..+|.=.+.++=+. =.. ..++-.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la---W~~-----------------~~lssG 276 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA---WNS-----------------SVLSSG 276 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe---ccC-----------------ceEEEe
Confidence 567899999999999999999999999999999999999884232322221 000 244556
Q ss_pred CCCCeEEEeecCCCCeEEE
Q 012917 387 PRKGIIEVWQMRTGPRLLT 405 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a 405 (453)
-|.|.|-++++|..+.+..
T Consensus 277 sr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVVS 295 (484)
T ss_pred cCCCcEEEEEEecchhhhh
Confidence 6677777777777666655
No 161
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.14 E-value=18 Score=41.58 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCcEEEEEcCCc---eEEEEeccc-ccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917 319 GSLAAITDSLGRILLLDTQAL---VVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 394 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~---~ivRmWKGy-RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV 394 (453)
.+|+|++-+.|-|.++|+..- ..+.+++-+ |.|.+-=+... .-.++|-+.++|.|++
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t-------------------ep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST-------------------EPNILISGSQDGTVKC 160 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC-------------------CccEEEecCCCceEEE
Confidence 478999999999999999983 223333332 22221111110 1158899999999999
Q ss_pred eecCCCCeEEEEE
Q 012917 395 WQMRTGPRLLTIQ 407 (453)
Q Consensus 395 W~~~~G~RV~a~~ 407 (453)
||||.-.-+-+|.
T Consensus 161 ~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 161 WDLRSKKSKSTFR 173 (839)
T ss_pred Eeeeccccccccc
Confidence 9999866655554
No 162
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=47.53 E-value=2.4e+02 Score=26.29 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=62.1
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-EEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV-VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~-ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
+......+..+...+++.+.+.....+.|.++|...+. .+..+++..+ ..+........ +...+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------~~~~~ 125 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSSP------------DGNSI 125 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC---CceeeEEEECC------------CcceE
Confidence 44556678899999999999999999999999999998 8889988665 22221111000 00113
Q ss_pred EEEEcCCCCeEEEeecCC-CCeEEEEEec
Q 012917 382 LAIHAPRKGIIEVWQMRT-GPRLLTIQCA 409 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~-G~RV~a~~v~ 409 (453)
++......+.+.+|+... +..+..+..+
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 154 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGH 154 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecC
Confidence 334445578888998876 5555555544
No 163
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=74 Score=32.68 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=50.3
Q ss_pred cCCCCeeeEEEECC--CCCEEEEEc------CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCC
Q 012917 304 KDHPRKGERLTLSP--SGSLAAITD------SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVK 375 (453)
Q Consensus 304 ~D~~R~~~~i~lsP--~~~laa~tD------slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k 375 (453)
.-..|+|.++.-|| .++||++|- .-||+.++|+..+.=|+...-|-=+.+-|=..-.+..
T Consensus 5 ~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~------------ 72 (311)
T KOG0277|consen 5 TTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH------------ 72 (311)
T ss_pred ecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC------------
Confidence 34569999999999 788888864 3589999999866666655544433332222211110
Q ss_pred CCccEEEEEEcCCCCeEEEeec
Q 012917 376 SDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 376 ~~~~l~LvIyaprRg~lEVW~~ 397 (453)
=-.||=|--+|.|.+|++
T Consensus 73 ----e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 73 ----ENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ----cceEEEEecCceEEEecc
Confidence 024566777888888874
No 164
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=47.29 E-value=62 Score=34.35 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc---ccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY---RDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy---RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
.......|++||+|+++|+--.-|.+.++...-...+.-..== +--|+.|.--...-- . +--.|
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l------~-------~~~~l 281 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL------S-------WEDEL 281 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE------E-------eCCEE
Confidence 3467999999999998888555699988877666555443322 445666663100000 0 00034
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccc
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPT 418 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~ 418 (453)
+++.|....+..|-- ++ +..+.=.-|.|++.++
T Consensus 282 ~lvg~~~~~~~~~~~--~~-~~l~~E~DG~riit~~ 314 (410)
T PF04841_consen 282 LLVGPDGDSISFWYD--GP-VILVSEIDGVRIITST 314 (410)
T ss_pred EEECCCCCceEEecc--Cc-eEEeccCCceEEEeCC
Confidence 555565555544432 22 4445555567776665
No 165
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=47.20 E-value=57 Score=24.41 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.3
Q ss_pred eEEEECCC-C--CEEEEEcCCCcEEEEEcCCce
Q 012917 311 ERLTLSPS-G--SLAAITDSLGRILLLDTQALV 340 (453)
Q Consensus 311 ~~i~lsP~-~--~laa~tDslGRV~LiD~~~~~ 340 (453)
..+.-||+ + .|.|.|.--|||-++|+.++.
T Consensus 4 R~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred EEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 45667874 3 699999999999999998643
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=46.31 E-value=1.3e+02 Score=31.65 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=57.3
Q ss_pred eeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEeccc-ccceeeEEEEEecccccccccccCCCC-----CCccEE
Q 012917 309 KGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVK-----SDYCLC 381 (453)
Q Consensus 309 ~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmWKGy-RdAqc~Wi~~~~~~~~~~~~~~~~~~k-----~~~~l~ 381 (453)
.+.++.++|. |+|....-..|-|.|+|+++..=-+- .|| =++-|- |..+. .+.+++.... .|..+|
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~k~~c~-v~~~h-----~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIAKHKCI-VAKQH-----ENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhh-ccceeheeee-ccccC-----CccceeeeeeeEEeeecCcee
Confidence 4678999994 79999999999999999987641100 000 011121 11110 0111111111 134445
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+-..-+..|+||++.+-+-+..|+.+
T Consensus 118 --tssSFDhtlKVWDtnTlQ~a~~F~me 143 (397)
T KOG4283|consen 118 --TSSSFDHTLKVWDTNTLQEAVDFKME 143 (397)
T ss_pred --ecccccceEEEeecccceeeEEeecC
Confidence 78888999999999999999999854
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.27 E-value=1.3e+02 Score=32.35 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=70.3
Q ss_pred ccccCCCCCcccCCCeeeeccCcceeeeeecc---eEEE----EeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcE
Q 012917 19 SDLGAGKEGWLVNDPNLLCALDMHTIALANRY---QTVI----INWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMR 91 (453)
Q Consensus 19 ~~~g~~~~~wl~~~~~~~~sp~~~~la~A~~~---~~v~----~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~ 91 (453)
...+.-+.+|+...|.+...++++.|-+|..+ ..|. .-|+.+ .-+.++..+.. .|-|||+. +. +|-.
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~~~~--~~siSsl~-VS-~dGk 294 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKKIKR--FKSISSLA-VS-DDGK 294 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--cccchhhhhhc--cCcceeEE-Ec-CCCc
Confidence 34444556677677999998887776665443 3333 234333 11344444422 35676652 11 4669
Q ss_pred EEEEeccccEEEEEecC--CcEeeecccCccceeEEEEeeccC
Q 012917 92 ALAVGTSRGYFLVYDLK--GDLVHRQLIHPGRILKLRVRGSRR 132 (453)
Q Consensus 92 ~I~VG~ssG~vrfyte~--G~LL~sQ~lh~~pV~~ik~r~~~~ 132 (453)
+++||+.+|-|.+|... -.+.+.-..|..-|.+|.+-...+
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC
Confidence 99999999999999944 556667778999999999876543
No 168
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=46.11 E-value=2e+02 Score=31.97 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
|....-..-.|++.-.+.+....-....+-++|+.+|..++..+|+-++= ...... + ++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv----~~~~~~--------------~---~~ 303 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV----RCLTID--------------P---FL 303 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE----EEEEcc--------------C---ce
Confidence 44444445556665545555555556778888888888888887776621 111110 0 23
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
..-..|+..|.||++++|.++..+..+.
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEecccc
Confidence 3446788999999999999988888543
No 169
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=46.02 E-value=34 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred ccCCC---CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 303 LKDHP---RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 303 l~D~~---R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
+.|.. --..+++++|+|+|.|..-..---+|+|+..+.+|.-+-
T Consensus 224 ~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 55554 346789999999999997777789999999998887663
No 170
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=45.18 E-value=32 Score=36.29 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe
Q 012917 32 DPNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD 106 (453)
Q Consensus 32 ~~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt 106 (453)
+|-++|||.|+.||++.++-+=+.+ ++.++. -+++...-+++||+|.|-|- +-..+-+| +-|+|++.
T Consensus 334 p~RL~lsP~g~~lA~s~gs~l~~~~---se~g~~--~~~~e~~h~~~Is~is~~~~-g~~~atcG--dr~vrv~~ 400 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFGSDLKVFA---SEDGKD--YPELEDIHSTTISSISYSSD-GKYIATCG--DRYVRVIR 400 (420)
T ss_pred ceEEEeCCCCcEEEeecCCceEEEE---cccCcc--chhHHHhhcCceeeEEecCC-CcEEeeec--ceeeeeec
Confidence 4789999999999999999765533 221111 12333334577888766542 22333344 45666554
No 171
>PRK04043 tolB translocation protein TolB; Provisional
Probab=44.76 E-value=4.2e+02 Score=28.27 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=27.9
Q ss_pred eeEEEECCCCCEEEEE---cCCCcEEEEEcCCceEEEEeccc
Q 012917 310 GERLTLSPSGSLAAIT---DSLGRILLLDTQALVVVRLWKGY 348 (453)
Q Consensus 310 ~~~i~lsP~~~laa~t---DslGRV~LiD~~~~~ivRmWKGy 348 (453)
...-..||||+.++.+ +.-..|.++|+.++..-|+=++-
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCC
Confidence 3345689999766653 34468999999999877765543
No 172
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=43.54 E-value=95 Score=32.90 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=36.7
Q ss_pred CcEEEEEEE--EeCC--cEEEEEeccccEEE-EEe--cCC-------cEeeecccCcc-ceeEEEEee
Q 012917 77 EYITAIEWL--VFEE--MRALAVGTSRGYFL-VYD--LKG-------DLVHRQLIHPG-RILKLRVRG 129 (453)
Q Consensus 77 e~ITs~~~l--p~~d--w~~I~VG~ssG~vr-fyt--e~G-------~LL~sQ~lh~~-pV~~ik~r~ 129 (453)
.+.|+|..- ...+ .+++-+|+++|.|. ..- .++ .+.-.|.+++. ||+.+++..
T Consensus 364 ~~~T~i~v~~v~~~~~~~tV~flGT~~G~l~K~v~~~~~~~~~~~~~~iee~~~~~~~~pI~~~~l~~ 431 (433)
T PF01403_consen 364 YRLTSIAVDRVQVENGSYTVAFLGTDDGRLHKKVVLSNSSSGHYESYIIEEIQVFPDSEPIQSMKLSP 431 (433)
T ss_dssp S-EEEEEEEEEEETTTCEEEEEEEETTSEEEEEEEESSSSTCT-EEEEEEEEE-STSC-EEEEEEEET
T ss_pred ceeeEEEEEEEecCCCcEEEEEEecCCceEEEEEEecCCCCcccccEEEEEEeecCCCCceEEEEecc
Confidence 378999877 6666 89999999999999 332 222 22335577764 999998754
No 173
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=43.48 E-value=2e+02 Score=30.17 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=56.5
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc---eeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA---SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA---qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
...++-+-+|..+.+.+..|-+-|+|++++++..+ |--|| .|.||+.... -++.-.
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~-------------------~cl~TG 133 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY-------------------QCLVTG 133 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCeeee--eecccceeEEEEecCCCc-------------------ceeEec
Confidence 34567777899999999999999999999988765 22332 4677753210 122344
Q ss_pred CCCCeEEEeecCCCCeEEEEEecCCe
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
.-+-.|+.||+|+-.-|.++..+.-+
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~LPeRv 159 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQLPERV 159 (347)
T ss_pred ccccceeecccCCCCeeeeeecccee
Confidence 45778888888887777776666543
No 174
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=43.47 E-value=2.6e+02 Score=33.71 Aligned_cols=36 Identities=28% Similarity=0.115 Sum_probs=27.8
Q ss_pred eeEEEECCCCCEEEEEcCC-CcEEEEEcCCceEEEEe
Q 012917 310 GERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLW 345 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDsl-GRV~LiD~~~~~ivRmW 345 (453)
-..|+++|+|+.+.++|+. +||..+|+.++.+.-+.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4569999999877777775 89999999987653333
No 175
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=45 Score=35.74 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=38.9
Q ss_pred CcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCC
Q 012917 77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRD 133 (453)
Q Consensus 77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~ 133 (453)
=+||++-+||=.+...+|-+|-.|+||+|+.. -| --||.++.++.+++.
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-----~q---RRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTR-----HQ---RRPVAQFDFLENPIS 251 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCc-----cc---CcceeEeccccCcce
Confidence 45777777765557899999999999999973 23 379999999988763
No 176
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.02 E-value=1.2e+02 Score=33.89 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=56.0
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-...+.+.+|+..++++.=..|-|+|+|..++.....=-..+=..++|.. +.+ +++-+-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp-------------------~ga--i~~V~s 318 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHP-------------------DGA--IFVVGS 318 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcC-------------------CCc--EEEEEc
Confidence 35677888999988888888899999999999888664445555555552 123 556688
Q ss_pred CCCeEEEeecCCCCe
Q 012917 388 RKGIIEVWQMRTGPR 402 (453)
Q Consensus 388 rRg~lEVW~~~~G~R 402 (453)
.||.|-+|||-..+-
T Consensus 319 ~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 319 EQGELQCFDMALSPI 333 (545)
T ss_pred CCceEEEEEeecCcc
Confidence 899999999987653
No 177
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=41.78 E-value=5.3e+02 Score=28.62 Aligned_cols=88 Identities=24% Similarity=0.299 Sum_probs=60.2
Q ss_pred CCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc-ccceeeEEEEEecccccccccccCCCCCC
Q 012917 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy-RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
|+.+.. .+..++..+||+++++|+.-+.|-|.|+-..++..+.-+|=- +=+.+.|- .+ +|
T Consensus 297 ~~~g~e--~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fs-----Sd----------sk-- 357 (514)
T KOG2055|consen 297 PPYGVE--EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFS-----SD----------SK-- 357 (514)
T ss_pred CCCCcc--cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEe-----cC----------Cc--
Confidence 444444 678899999999999999999999999999999988766511 00011111 01 11
Q ss_pred ccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
. .++ ..-.|-|=||++++-..+..|...
T Consensus 358 -~-l~~--~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 358 -E-LLA--SGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred -E-EEE--EcCCceEEEEecCCcceEEEEeec
Confidence 1 222 234688999999998888777744
No 178
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=41.50 E-value=1.6e+02 Score=32.55 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=75.1
Q ss_pred cccccCCCCCcccCCCeeeeccCcceee------------eeecceEEEEeecCCCC--------Ccee-Eee-------
Q 012917 18 LSDLGAGKEGWLVNDPNLLCALDMHTIA------------LANRYQTVIINWADPEG--------LVAK-IRP------- 69 (453)
Q Consensus 18 ~~~~g~~~~~wl~~~~~~~~sp~~~~la------------~A~~~~~v~~~w~~~~~--------~~~~-~~g------- 69 (453)
+.+.++=|=-|.+++-....++++-+-+ +.+...+..++|++.+. ..++ |++
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 3333323778998855555556644433 33455666678876652 1122 431
Q ss_pred cCCCCCCCcEEEEEEEEe-------CCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeecc
Q 012917 70 ELSPIASEYITAIEWLVF-------EEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSR 131 (453)
Q Consensus 70 ~l~~~~~e~ITs~~~lp~-------~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~ 131 (453)
+|.. -+..|-.+-|.|- .+-..++--..++.|++|+ +.|..|+.=+=|.+||-++++-...
T Consensus 396 ~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g 464 (524)
T KOG0273|consen 396 DLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG 464 (524)
T ss_pred hhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence 3433 3456778888887 2336777777789999999 8899999988999999999976543
No 179
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=41.27 E-value=3.1e+02 Score=29.11 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=45.6
Q ss_pred ccCCCeeeeccCcceeeeeecc-eEEEE--------e-ecCCCC--CceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEe
Q 012917 29 LVNDPNLLCALDMHTIALANRY-QTVII--------N-WADPEG--LVAKIRPELSPIASEYITAIEWLVFEEMRALAVG 96 (453)
Q Consensus 29 l~~~~~~~~sp~~~~la~A~~~-~~v~~--------~-w~~~~~--~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG 96 (453)
|.+ ..++++|.|-.||+.+.. |++-. . ...+++ ..+.|.+ ++|-.+.|-. ---++|=
T Consensus 29 l~~-~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-------~~iv~~~wt~---~e~LvvV 97 (410)
T PF04841_consen 29 LSD-YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-------GRIVGMGWTD---DEELVVV 97 (410)
T ss_pred ccc-eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC-------CCEEEEEECC---CCeEEEE
Confidence 445 889999999999999888 44322 0 111111 1133332 4466665533 2334455
Q ss_pred ccccEEEEEecCCcE
Q 012917 97 TSRGYFLVYDLKGDL 111 (453)
Q Consensus 97 ~ssG~vrfyte~G~L 111 (453)
+++|.+|+|+..|+.
T Consensus 98 ~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 98 QSDGTVRVYDLFGEF 112 (410)
T ss_pred EcCCEEEEEeCCCce
Confidence 799999999999998
No 180
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=41.27 E-value=1.1e+02 Score=28.25 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=49.2
Q ss_pred CCcEEEEEEEEe---CCcEEEEEeccccEEEEEe--cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe
Q 012917 76 SEYITAIEWLVF---EEMRALAVGTSRGYFLVYD--LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV 150 (453)
Q Consensus 76 ~e~ITs~~~lp~---~dw~~I~VG~ssG~vrfyt--e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~ 150 (453)
++.|||++.=|| .+.-+++||+++. |..|+ +|-++.+++. ++-|..|-+-+... ..+.|.|+ +.
T Consensus 47 n~~italaaG~l~~~~~~D~LliGt~t~-llaYDV~~N~d~Fyke~--~DGvn~i~~g~~~~------~~~~l~iv--GG 115 (136)
T PF14781_consen 47 NQEITALAAGRLKPDDGRDCLLIGTQTS-LLAYDVENNSDLFYKEV--PDGVNAIVIGKLGD------IPSPLVIV--GG 115 (136)
T ss_pred CCceEEEEEEecCCCCCcCEEEEeccce-EEEEEcccCchhhhhhC--ccceeEEEEEecCC------CCCcEEEE--Cc
Confidence 588999999999 3557999999885 66788 5566666666 46777776654432 13444444 55
Q ss_pred EEEEeChhH
Q 012917 151 LARFDGSEI 159 (453)
Q Consensus 151 i~~idG~~L 159 (453)
=|.|.|++-
T Consensus 116 ncsi~Gfd~ 124 (136)
T PF14781_consen 116 NCSIQGFDY 124 (136)
T ss_pred eEEEEEeCC
Confidence 566666653
No 181
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=40.43 E-value=1.1e+02 Score=33.46 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=67.0
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE-EEecc-------cccceeeE-EEEEecccccccccccC
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV-RLWKG-------YRDASCVF-MEMLVNKDAATSSAYYA 372 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv-RmWKG-------yRdAqc~W-i~~~~~~~~~~~~~~~~ 372 (453)
.+--+++.+.+++++|+.++.-.++.-|-|+=+|+-+|.-. .+||- |+.-+-.| ..+.+.. .-
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil--------~~ 208 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL--------TL 208 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE--------EE
Confidence 46667888999999999999988899999999999999988 46653 22212222 0000000 00
Q ss_pred CCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 373 PVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 373 ~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
...+|.. .+....+...|-||+.+++..|.+|..+.+
T Consensus 209 avS~Dgk--ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~ 245 (479)
T KOG0299|consen 209 AVSSDGK--YLATGGRDRHVQIWDCDTLEHVKVFKGHRG 245 (479)
T ss_pred EEcCCCc--EEEecCCCceEEEecCcccchhhccccccc
Confidence 0001111 234677788889999999999999887766
No 182
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=39.85 E-value=2.7e+02 Score=30.74 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=39.6
Q ss_pred EEEEEEEEe-CCcEEEEEeccccEEEEEecC-CcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEE
Q 012917 79 ITAIEWLVF-EEMRALAVGTSRGYFLVYDLK-GDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLA 152 (453)
Q Consensus 79 ITs~~~lp~-~dw~~I~VG~ssG~vrfyte~-G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~ 152 (453)
.-.+.||-+ .|-++++-|--+|+|.+|+-+ =.++++ +=.+.||++|.+-. .++.+.|-..+.++
T Consensus 238 ~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s-~~~~~pvLsiavs~---------dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 238 NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS-WKYPGPVLSIAVSP---------DDQTVVIGMSNGLV 303 (487)
T ss_pred cceEEEEEeecCCceEeecccccceEEEEccceEEEEe-eecccceeeEEecC---------CCceEEEeccccee
Confidence 344445555 345777777778888888833 344444 44577888877422 25667777776665
No 183
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.65 E-value=3.9e+02 Score=29.41 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=60.4
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
...++++-|||-++++.-..|-|=++|+.....+-=+-|+ .+.+.=|..-|+ +.+||.=+ -
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsEN-----------------GY~Lat~a-d 409 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSEN-----------------GYWLATAA-D 409 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccC-----------------ceEEEEEe-c
Confidence 3677888999999999888899999999998888888773 344444443332 34666655 5
Q ss_pred CCeEEEeecCCCCeEEEEEecC
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+|.|.+||+|--.-+-+|....
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CCeEEEEEehhhcccceeeccc
Confidence 7889999999766666665544
No 184
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=38.27 E-value=1.4e+02 Score=31.60 Aligned_cols=85 Identities=22% Similarity=0.182 Sum_probs=58.5
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
..|.-++.++..++.|-||++.|+.-..|-|.|+|+.. -.-|-+| +|....+- + +-
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D----F~~~eHr-----~~R~nve~--------------d-hp 135 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD----FENKEHR-----CIRQNVEY--------------D-HP 135 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch----hhhhhhh-----HhhccccC--------------C-Cc
Confidence 35899999999999999999999988888888887755 1111111 11111010 1 11
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
-+|.|||-=..+-||-- +|..++.+...|
T Consensus 136 T~V~FapDc~s~vv~~~-~g~~l~vyk~~K 164 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVK-RGNKLCVYKLVK 164 (420)
T ss_pred eEEEECCCcceEEEEEc-cCCEEEEEEeee
Confidence 48899998888888866 799988887554
No 185
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=38.21 E-value=24 Score=38.40 Aligned_cols=204 Identities=18% Similarity=0.187 Sum_probs=114.4
Q ss_pred CCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHH
Q 012917 88 EEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRW 166 (453)
Q Consensus 88 ~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c 166 (453)
|+-..++.|+-+|.+.... -+|.||---.=|.-+|.+||+-.-... ....+++-..++| +-.+|.+.
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg~V~vW-------~l~~lv~a---- 158 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDGAVLVW-------LLTDLVSA---- 158 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCccEEEE-------EEEeeccc----
Confidence 6678999999999999999 459999888889999999996543220 0111111112222 12222211
Q ss_pred HHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEE-eCcCCCCchhhcccccceEEEEeCCCceeEEEE
Q 012917 167 FQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAI-TGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFR 245 (453)
Q Consensus 167 ~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~-~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~ 245 (453)
+ +...+.|+.+|+=- .-+|.|.-| .|.. .-.+++++.|-.+-.|.
T Consensus 159 -------------------~--~~~~~~p~~~f~~H-tlsITDl~ig~Gg~------------~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 159 -------------------D--NDHSVKPLHIFSDH-TLSITDLQIGSGGT------------NARLYTASEDRTIKLWD 204 (476)
T ss_pred -------------------c--cCCCccceeeeccC-cceeEEEEecCCCc------------cceEEEecCCceEEEEE
Confidence 1 11234666777532 226888877 3321 11367777777777776
Q ss_pred eccCCCcchhhhhhhhhhhHHHHHHhhhh----h----------ccccCCC---CCCCCCCCCCcc-ccCCCCccccCCC
Q 012917 246 LSEDRSRSLVGAILSKVVPATFSTISSLS----K----------MIWRSEQ---SPKKSEPKPQSF-ARASPLTCLKDHP 307 (453)
Q Consensus 246 ~~e~~~~s~~~a~~S~va~av~S~~~s~a----k----------~~W~~~~---~~~~~e~~p~~~-~~a~pl~~l~D~~ 307 (453)
+..+.= +-+++.-+ .+++++ . ..|-.+- +.+..-.+.+.. +--+....|.-++
T Consensus 205 lS~g~L-------Llti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 205 LSLGVL-------LLTITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred ecccee-------eEEEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 665411 11011000 111111 0 1111000 111110011110 1122333455555
Q ss_pred C--eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 308 R--KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 308 R--~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
- .+.++++|-||++.+..|-.|.|.++|+...++||.--
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 5 79999999999999999999999999999999999653
No 186
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=37.64 E-value=1.4e+02 Score=32.28 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=60.9
Q ss_pred CCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCc---eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 306 HPRKGERLTLSPSG-SLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 306 ~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~---~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
..+.++.|+=||+. ..+|.+--.|-|=++|+..+ -.+-. |.+-. =+.|..=+ + +.-
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s----DVNVISWn-----------r--~~~-- 315 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS----DVNVISWN-----------R--REP-- 315 (440)
T ss_pred cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCC----ceeeEEcc-----------C--Ccc--
Confidence 67889999999975 67778888899999999988 33322 43322 33332211 1 112
Q ss_pred EEEEcCCCCeEEEeecCC---CCeEEEEEecCC
Q 012917 382 LAIHAPRKGIIEVWQMRT---GPRLLTIQCAKG 411 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~---G~RV~a~~v~~~ 411 (453)
|....--.|.+.||++|+ |+-|+.|+-+++
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 556777899999999998 788999997765
No 187
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.68 E-value=4.1e+02 Score=28.35 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEecccccccccccCCCCC
Q 012917 298 SPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 298 ~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
.++..|.-..-+-.+.+--|+.+|++.+...--.-|+|.... ..|-++.|+-|---.=+- +.
T Consensus 305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF---~~-------------- 367 (481)
T KOG0300|consen 305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF---NT-------------- 367 (481)
T ss_pred ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEE---ec--------------
Confidence 344556666777888999999999999877667777887633 346678888772111110 00
Q ss_pred CccEEEEEEcCCCCeEEEeecCC-CCeEEEEEec
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCA 409 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~ 409 (453)
+ .-|+...-+..|+||++++ -.-+++++..
T Consensus 368 d---d~vVSgSDDrTvKvWdLrNMRsplATIRtd 398 (481)
T KOG0300|consen 368 D---DRVVSGSDDRTVKVWDLRNMRSPLATIRTD 398 (481)
T ss_pred C---CceeecCCCceEEEeeeccccCcceeeecC
Confidence 1 2457777789999999998 3456666543
No 188
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.24 E-value=78 Score=34.27 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=58.6
Q ss_pred cccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 302 CLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
-|+-+.|-+..|++||.+. |+...-..-.|=++|+.+..++-++-.||- -|--..+-++ .
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~---~wSC~wDlde---------------~- 248 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE---------------R- 248 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC---ceeeeeccCC---------------c-
Confidence 3666778899999999766 776666666788999999999999988843 3444433322 1
Q ss_pred EEEEEcC-CCCeEEEeecCC
Q 012917 381 CLAIHAP-RKGIIEVWQMRT 399 (453)
Q Consensus 381 ~LvIyap-rRg~lEVW~~~~ 399 (453)
=+|||. .||.|=|+|||+
T Consensus 249 -h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 249 -HVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred -ceeEEeccCceEEEEEccC
Confidence 238987 579999999997
No 189
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=35.74 E-value=1.2e+02 Score=34.55 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCCeeeEEEECCCCCEEEEE-cCCCcEEEEEcCCce---------------------------EEEEecccccceeeEEE
Q 012917 306 HPRKGERLTLSPSGSLAAIT-DSLGRILLLDTQALV---------------------------VVRLWKGYRDASCVFME 357 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~---------------------------ivRmWKGyRdAqc~Wi~ 357 (453)
+.+..-++|..|++..+-+| -..|-|+|+|+..-. =+|=||..-.+-.+-|.
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Q ss_pred EEecccccccccccCCCCCCccEEEEEEcCC-CCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCC----CCC-Cc
Q 012917 358 MLVNKDAATSSAYYAPVKSDYCLCLAIHAPR-KGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMA----SSP-YV 431 (453)
Q Consensus 358 ~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr-Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~----~~~-~~ 431 (453)
+..-.|.. +++-|.- +|+|+|||+|.-.+.+.-.=..--++.+.+-++.|... +++ |-
T Consensus 223 vv~fkDe~----------------tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 223 VVLFKDES----------------TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred EEEEeccc----------------eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Q ss_pred CcEEEEEeCCCCceEEEe
Q 012917 432 PLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 432 ~~~~~lld~~~g~l~~i~ 449 (453)
-..|. |++|.+.|
T Consensus 287 ~AsCt-----D~sIy~yn 299 (720)
T KOG0321|consen 287 FASCT-----DNSIYFYN 299 (720)
T ss_pred EEEec-----CCcEEEEe
No 190
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.20 E-value=4.9e+02 Score=31.07 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred CcccceeeeeeecccccccCC-CCCcccCCCeeeeccCcceeeeeec----ceEEEEeecCCCCCceeEeecCCCCCCCc
Q 012917 4 RTHTTEVGSIACTDLSDLGAG-KEGWLVNDPNLLCALDMHTIALANR----YQTVIINWADPEGLVAKIRPELSPIASEY 78 (453)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~g~~-~~~wl~~~~~~~~sp~~~~la~A~~----~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ 78 (453)
|.+.+| |-+-+..+.--|+. .=.|= |.|.+||-+++ ..+||-.-..-.++..+.+- ++ +.+.
T Consensus 240 RVy~Re-G~L~stSE~v~gLe~~l~Wr---------PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~--~~-~~~~ 306 (928)
T PF04762_consen 240 RVYSRE-GELQSTSEPVDGLEGALSWR---------PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF--DP-EEEK 306 (928)
T ss_pred EEECCC-ceEEeccccCCCccCCccCC---------CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC--CC-CCce
Q ss_pred EEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeC---------
Q 012917 79 ITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMP--------- 148 (453)
Q Consensus 79 ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp--------- 148 (453)
|..+.|= .|-+++||-+.+. |++|| -|-.-=++|-++...-..+..=.+-. +..-.|.|+..
T Consensus 307 v~~l~Wn--~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp-----e~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 307 VIELAWN--SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP-----EKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eeEEEEC--CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC-----CCCCEEEEEecCCcEEEEEE
Q ss_pred ---------------CeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCccCCccceecccCCCCceeeEEE
Q 012917 149 ---------------GVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADAAI 212 (453)
Q Consensus 149 ---------------~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~~~~L~ykKW~l~~~~~i~Daa~ 212 (453)
+.++.|||..| .--.-.....|||+.+..-.++. +++|.+|
T Consensus 379 ~~~v~~s~~~~~~D~g~vaVIDG~~l---------------------llTpf~~a~VPPPMs~~~l~~~~--~v~~vaf 434 (928)
T PF04762_consen 379 AWDVSRSPGSSPNDNGTVAVIDGNKL---------------------LLTPFRRAVVPPPMSSYELELPS--PVNDVAF 434 (928)
T ss_pred EEEEEecCCCCccCceEEEEEeCCeE---------------------EEecccccCCCchHhceEEcCCC--CcEEEEE
No 191
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=35.16 E-value=1.1e+02 Score=35.65 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=56.5
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
.-..+.++|+|-|+|++=+.--+.++|-.+|..+--.-|+-+|--+-.-. + | .. -.|.+.-
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~--n-D--------------Ck--HlISvsg 703 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL--N-D--------------CK--HLISVSG 703 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec--c-c--------------ch--hheeecC
Confidence 35689999999999999999999999999998887777888865443321 1 1 11 2388888
Q ss_pred CCeEEEeecCC
Q 012917 389 KGIIEVWQMRT 399 (453)
Q Consensus 389 Rg~lEVW~~~~ 399 (453)
+|.|-||.+.+
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99999999876
No 192
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=1.6e+02 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=29.7
Q ss_pred CCcEEEEEEEEe--CCcEEEEEeccccEEEEEecCCc
Q 012917 76 SEYITAIEWLVF--EEMRALAVGTSRGYFLVYDLKGD 110 (453)
Q Consensus 76 ~e~ITs~~~lp~--~dw~~I~VG~ssG~vrfyte~G~ 110 (453)
.+-|++|.|-|. .+...|||++-+| ||+|...+.
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 577999999998 6678999999999 999997753
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.88 E-value=2.1e+02 Score=33.26 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=37.1
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEE
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEM 358 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~ 358 (453)
+..|-++-+-+..|+.|.-||.++.|+.++.++-.=-|.-. ++|=..
T Consensus 459 vrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nS--V~wNT~ 505 (1081)
T KOG1538|consen 459 VRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPGANS--VAWNTQ 505 (1081)
T ss_pred eEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCCCce--EEeecc
Confidence 55677777888889999999999999999999987666644 555443
No 194
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=14 Score=31.77 Aligned_cols=10 Identities=60% Similarity=1.212 Sum_probs=8.1
Q ss_pred Eeccccccee
Q 012917 344 LWKGYRDASC 353 (453)
Q Consensus 344 mWKGyRdAqc 353 (453)
=|||||||.+
T Consensus 53 ~wkg~RdCHi 62 (91)
T COG3041 53 DWKGYRDCHI 62 (91)
T ss_pred Cccchhhccc
Confidence 3999999754
No 195
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=32.51 E-value=1.3e+02 Score=24.20 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=40.0
Q ss_pred eccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeE-EEEeChhHH
Q 012917 96 GTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVL-ARFDGSEIQ 160 (453)
Q Consensus 96 G~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i-~~idG~~L~ 160 (453)
....-+|++.+.+|..+++..++..-...+.... .=+|.+=.++++ +.+||-++-
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~----------~~~i~iGna~~v~v~~nG~~~~ 60 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKE----------PFRIRIGNAGAVEVTVNGKPVD 60 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCC----------CEEEEEeCCCcEEEEECCEECC
Confidence 3456789999999999999999988888774221 222556666665 888888773
No 196
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=31.79 E-value=1e+02 Score=29.66 Aligned_cols=60 Identities=27% Similarity=0.361 Sum_probs=39.9
Q ss_pred EEEEEeccccEEEEEecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHH
Q 012917 91 RALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQ 160 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~ 160 (453)
.-++||+++| |.+|..+..--..+.++..+|.+|.+-.. -+-|.++..+.+...|-.+|.
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~---------~~~llvLsd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPE---------LNLLLVLSDGQLYVYDLDSLE 67 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecc---------cCEEEEEcCCccEEEEchhhc
Confidence 4688898888 77887744444555556566777775422 334777777777777776664
No 197
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=31.78 E-value=1.6e+02 Score=30.90 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=42.9
Q ss_pred cCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeeecccCccceeEEEE
Q 012917 70 ELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRV 127 (453)
Q Consensus 70 ~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik~ 127 (453)
+|..++.+-||++...|- -.-++|+.=+|+||+|+.....|.-..-|..|++.-.+
T Consensus 7 ~l~npP~d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F 62 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAF 62 (323)
T ss_pred ccCCCChhceeeEEEcCc--CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeec
Confidence 344446789999988854 34577888999999999888866656778889988764
No 198
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=31.62 E-value=2.7e+02 Score=29.57 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=72.3
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
+..+--||+|++-++..-.|-|=|||=..+..||-.+ .+-.+++.=.....+ + -.+.-...
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn------------~------kyiLsSG~ 325 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN------------G------KYILSSGK 325 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC------------C------eEEeecCC
Confidence 5677788999999999999999999887777777553 333333322222111 1 15677889
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCC---CCc--CcEEEEEeCCCCceEEEe
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASS---PYV--PLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~---~~~--~~~~~lld~~~g~l~~i~ 449 (453)
+.++.+|.+-+|+.+-..+ +....|-.... .|+ ..-|+|.|..+++|-.-|
T Consensus 326 DS~vkLWEi~t~R~l~~Yt----------GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 326 DSTVKLWEISTGRMLKEYT----------GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred cceeeeeeecCCceEEEEe----------cCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence 9999999999998876544 33333322111 243 466777787777765433
No 199
>PRK04043 tolB translocation protein TolB; Provisional
Probab=31.26 E-value=6.7e+02 Score=26.71 Aligned_cols=38 Identities=3% Similarity=-0.255 Sum_probs=28.4
Q ss_pred eeeEEEECCCCC-EEEEEcCC---CcEEEEEcCCceEEEEec
Q 012917 309 KGERLTLSPSGS-LAAITDSL---GRILLLDTQALVVVRLWK 346 (453)
Q Consensus 309 ~~~~i~lsP~~~-laa~tDsl---GRV~LiD~~~~~ivRmWK 346 (453)
....-..||+|+ +++.+..- ..|.++|+.+|..-++-.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~ 230 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS 230 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec
Confidence 456788899997 47765333 469999999998877753
No 200
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=31.08 E-value=5.5e+02 Score=27.32 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=24.2
Q ss_pred EEEECCCCCEEEE-EcCCCcEEEEEcCCc
Q 012917 312 RLTLSPSGSLAAI-TDSLGRILLLDTQAL 339 (453)
Q Consensus 312 ~i~lsP~~~laa~-tDslGRV~LiD~~~~ 339 (453)
+|+..|+|++|=+ +..-++|++++....
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 4789999999987 688899999988874
No 201
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=30.98 E-value=1.8e+02 Score=30.69 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=50.1
Q ss_pred eEEEECC---CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 311 ERLTLSP---SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 311 ~~i~lsP---~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-+=+.|| ...|+|+.-..=.|=|-|++.|..-+...|+||--++ .+=.+ +.+ +..--+.
T Consensus 147 YshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla----V~Wsp-----------~~e---~vLatgs 208 (397)
T KOG4283|consen 147 YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA----VEWSP-----------SSE---WVLATGS 208 (397)
T ss_pred ehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE----EEecc-----------Cce---eEEEecC
Confidence 3445566 4678888666678999999999999999999994322 11111 112 3444567
Q ss_pred CCCeEEEeecCCC
Q 012917 388 RKGIIEVWQMRTG 400 (453)
Q Consensus 388 rRg~lEVW~~~~G 400 (453)
-+|.+.+|++|--
T Consensus 209 aDg~irlWDiRra 221 (397)
T KOG4283|consen 209 ADGAIRLWDIRRA 221 (397)
T ss_pred CCceEEEEEeecc
Confidence 7899999999853
No 202
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.96 E-value=32 Score=38.60 Aligned_cols=51 Identities=24% Similarity=0.416 Sum_probs=43.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEeccc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKD 363 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~ 363 (453)
...|++.|.|++.|+.=+-|-|..+|..+|.+|.-| |--+|.-++.-.+.|
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw---rpmecdllqlaapsd 929 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW---RPMECDLLQLAAPSD 929 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC---CcccchhhhhcCchh
Confidence 457899999999999999999999999999999988 677888887765544
No 203
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=30.86 E-value=1.1e+02 Score=32.66 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCCcEEEEEcCCceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 316 SPSGSLAAITDSLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 316 sP~~~laa~tDslGRV~LiD~~~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
.-++++..++|--|.|-|+|+..-.- |+-+.|+=+- -+-+++..+++ . + .|.-+..+=..
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~e-------------e-g--~I~s~GdDcyt 370 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKEE-------------E-G--SIFSVGDDCYT 370 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeeccccc-ccccccccccc-------------c-c--eEEEccCeeEE
Confidence 34688999999999999999987766 8888887541 11122111111 0 1 34457788889
Q ss_pred EEeecCCCCeEEEEE
Q 012917 393 EVWQMRTGPRLLTIQ 407 (453)
Q Consensus 393 EVW~~~~G~RV~a~~ 407 (453)
.||.+++|..+.++.
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999999999988876
No 204
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=30.83 E-value=86 Score=22.57 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCCCeEEEEeCCeEEEEeChhHH
Q 012917 138 TAEEEVCVVMPGVLARFDGSEIQ 160 (453)
Q Consensus 138 ~~~eel~Ilyp~~i~~idG~~L~ 160 (453)
.....|+|.|.+.++.+|+..-.
T Consensus 3 ~~~~qLTIfY~G~V~Vfd~v~~~ 25 (36)
T PF06200_consen 3 PETAQLTIFYGGQVCVFDDVPPD 25 (36)
T ss_pred CCCCcEEEEECCEEEEeCCCCHH
Confidence 34667999999999999987654
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=30.82 E-value=38 Score=37.31 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=51.5
Q ss_pred ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917 315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 394 (453)
Q Consensus 315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV 394 (453)
--|...|++..-..|+|.+||=.++.+||..||=|. =+.+.++- +.+=+.--..-..-|+|
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----VVNCLEpH---------------P~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----VVNCLEPH---------------PHLPVLASSGIDHDVKI 462 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccc----eEeccCCC---------------CCCchhhccCCccceee
Confidence 357788999988899999999999999999999998 34444331 11122233445677999
Q ss_pred eecCCCCeEE
Q 012917 395 WQMRTGPRLL 404 (453)
Q Consensus 395 W~~~~G~RV~ 404 (453)
|+.+.-.|..
T Consensus 463 WTP~~~er~~ 472 (559)
T KOG1334|consen 463 WTPLTAERAT 472 (559)
T ss_pred ecCCcccccc
Confidence 9987666543
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=1.1e+02 Score=35.99 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=36.7
Q ss_pred CcEEEEEEEEeCCcEEEEEeccccEEEEEe-----cCCcEeeecccCccceeEEEEeeccC
Q 012917 77 EYITAIEWLVFEEMRALAVGTSRGYFLVYD-----LKGDLVHRQLIHPGRILKLRVRGSRR 132 (453)
Q Consensus 77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-----e~G~LL~sQ~lh~~pV~~ik~r~~~~ 132 (453)
+.++++..+.- |-.+|||||.+|.|.+|- +.|...--+.--.+||..|-.|..+.
T Consensus 125 ~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 125 PSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 34444444443 578999999999999995 33442222233367999999888764
No 207
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.91 E-value=2.2e+02 Score=33.98 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=71.8
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
-|.++.--...|..-|++-+++..-..=.|=+++-.+...+--.+|+=| +|.+..=- | -.=
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD----YVRt~~FH-------h--------eyP 106 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD----YVRTVFFH-------H--------EYP 106 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc----eeEEeecc-------C--------CCc
Confidence 3666677778899999999999976677899999999999999999999 88764220 0 112
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
-+|.|.-+-.|.||++|++..|+..+-+
T Consensus 107 WIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred eEEEccCCCeEEEEeccCCceEEEEecC
Confidence 5688999999999999999999998844
No 208
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=29.69 E-value=7.2e+02 Score=26.60 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcC
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQ 337 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~ 337 (453)
+..-..+.|.. -+|++-|+ |..|+|..+|..
T Consensus 197 ~~~~~~~DIi~-~kGkfYAv-D~~G~l~~i~~~ 227 (373)
T PLN03215 197 QMGYHFSDIIV-HKGQTYAL-DSIGIVYWINSD 227 (373)
T ss_pred CCCceeeEEEE-ECCEEEEE-cCCCeEEEEecC
Confidence 33333444433 46777776 888999999953
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=28.79 E-value=2.5e+02 Score=30.50 Aligned_cols=104 Identities=19% Similarity=0.315 Sum_probs=60.2
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc-eee--EEEEEecccccccccccCCCCC
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA-SCV--FMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA-qc~--Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
+..|.-+.|....+--+|+|.+.|..+.-|-|+|+=... +|..-.-+.| +.. |+....-.-.. ..+....-..
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~---~~~~~~d~e~~~~ke~w~v~k~lr~h~-~diydL~Ws~ 133 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGD---VRIFDADTEADLNKEKWVVKKVLRGHR-DDIYDLAWSP 133 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecC---cCCccccchhhhCccceEEEEEecccc-cchhhhhccC
Confidence 346888889999999999999999999999999987664 2221000000 001 32221110000 0000000001
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+ .+ ++|.+.-++.+-+|++..|..++...-+
T Consensus 134 d-~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 134 D-SN-FLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred C-Cc-eeeeeeccceEEEEEeccceeEeecccc
Confidence 1 22 4566667899999999999888776633
No 210
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.22 E-value=1.1e+02 Score=31.93 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCeeeEEEECCCCCEEEE-EcCCCcEEEEEcCCceEEEEe
Q 012917 307 PRKGERLTLSPSGSLAAI-TDSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~-tDslGRV~LiD~~~~~ivRmW 345 (453)
+.-+-+|+.+++|.++|+ +=.-|+|.++|..+|.++..-
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 356899999999987666 688999999999999987653
No 211
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.40 E-value=1e+02 Score=33.38 Aligned_cols=98 Identities=9% Similarity=0.066 Sum_probs=69.2
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
..|.-.--.+++|..+++++....+-+.+-+-++|+..+....-..|+-| ++.+..-+ ....
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd------kVt~ak~~------------~~~~ 274 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD------KVTAAKFK------------LSHS 274 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccc------ceeeehhh------------cccc
Confidence 34666666788999999999888888889999999999999999999888 33332211 0110
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEecc
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQP 417 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~ 417 (453)
=||-+.++..|+.|+|+.+.+.-++.++..|-=|-.
T Consensus 275 -~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 275 -RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred -ceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 177777788888888877766666665555443333
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=26.36 E-value=1.5e+02 Score=31.81 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=46.6
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEE-EEEcCCceEEEEe-cccccceeeEEEEE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRIL-LLDTQALVVVRLW-KGYRDASCVFMEML 359 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~-LiD~~~~~ivRmW-KGyRdAqc~Wi~~~ 359 (453)
..+.-++-....|+.+|+|++.|++-.-|+|| ++++..|.-+.-+ +|++=++..=+-..
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 34666677788999999999999998889887 7899999988866 58886666555443
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=26.14 E-value=64 Score=34.17 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=30.6
Q ss_pred EEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEee
Q 012917 91 RALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~ 129 (453)
+.||||+|+|.||+|+ ++|.+|-.=--|+.-+-.+|+-+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~ 80 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFIS 80 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEec
Confidence 7899999999999999 66777765566677777776554
No 214
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.11 E-value=73 Score=36.74 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=44.3
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 351 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA 351 (453)
+|.=+.--+++|.+++...|+|..-..|-|=++|+..+.++|-.-|+|+-
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~ 114 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN 114 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC
Confidence 35555567899999999999999999999999999999999999999874
No 215
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=25.14 E-value=7.7e+02 Score=28.33 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=58.7
Q ss_pred CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCc-EEEEEeccccEEEEEecC-Cc
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEM-RALAVGTSRGYFLVYDLK-GD 110 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw-~~I~VG~ssG~vrfyte~-G~ 110 (453)
..+..|..+.. |+-.+++--++=|+..+ +.++..-.++ +.+.|..+-|.+.+|- .+++|||. .+|.+|+.. -+
T Consensus 33 ~li~gss~~k~-a~V~~~~~~LtIWD~~~-~~lE~~~~f~--~~~~I~dLDWtst~d~qsiLaVGf~-~~v~l~~Q~R~d 107 (631)
T PF12234_consen 33 SLISGSSIKKI-AVVDSSRSELTIWDTRS-GVLEYEESFS--EDDPIRDLDWTSTPDGQSILAVGFP-HHVLLYTQLRYD 107 (631)
T ss_pred ceEeecccCcE-EEEECCCCEEEEEEcCC-cEEEEeeeec--CCCceeeceeeecCCCCEEEEEEcC-cEEEEEEccchh
Confidence 33445554444 66565555555687664 3355555552 4688999999999776 88999996 478888752 22
Q ss_pred EeeecccCccceeEEEEeecc
Q 012917 111 LVHRQLIHPGRILKLRVRGSR 131 (453)
Q Consensus 111 LL~sQ~lh~~pV~~ik~r~~~ 131 (453)
.+-... .-.||.+|.++...
T Consensus 108 y~~~~p-~w~~i~~i~i~~~T 127 (631)
T PF12234_consen 108 YTNKGP-SWAPIRKIDISSHT 127 (631)
T ss_pred hhcCCc-ccceeEEEEeecCC
Confidence 222211 12589999998755
No 216
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=3.6e+02 Score=31.03 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-+..+|.+-|..-|+.++=--|+|-++|..+..+||-+ ++.+..-.. ..--.+| --++-..
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-----------eV~~~PvRa---~kfiaRk-----nWiv~Gs 74 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-----------EVSEVPVRA---AKFIARK-----NWIVTGS 74 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-----------eecccchhh---heeeecc-----ceEEEec
Confidence 35678999999999999999999999999999999875 332221100 0011122 1345566
Q ss_pred CCCeEEEeecCCCCeEEEEEecCC---eEEecccc
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKG---SKILQPTY 419 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~---~~Ll~~~~ 419 (453)
-++-|.|++..++.||..|+++.. |.-+-|+-
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~ 109 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL 109 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCC
Confidence 688999999999999999999876 44555543
No 217
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=24.48 E-value=2e+02 Score=30.16 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=43.6
Q ss_pred ceEEEEeecCCC-----CCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-CcEeeecccCcccee
Q 012917 50 YQTVIINWADPE-----GLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GDLVHRQLIHPGRIL 123 (453)
Q Consensus 50 ~~~v~~~w~~~~-----~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~LL~sQ~lh~~pV~ 123 (453)
+.++++.|+..= +. -+.++.+.. +--|+.++ +-|..=+++|..+|.||.|+.+ |.-..-+ =|+++|+
T Consensus 26 ~~LLvssWDgslrlYdv~~-~~l~~~~~~--~~plL~c~---F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ 98 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPA-NSLKLKFKH--GAPLLDCA---FADESTIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIR 98 (323)
T ss_pred CcEEEEeccCcEEEEeccc-hhhhhheec--CCceeeee---ccCCceEEEeccCceEEEEEecCCcceeec-cCCCceE
Confidence 345566676553 11 144555544 12244443 4456678999999999999966 4444443 4889988
Q ss_pred EEE
Q 012917 124 KLR 126 (453)
Q Consensus 124 ~ik 126 (453)
-|.
T Consensus 99 ci~ 101 (323)
T KOG1036|consen 99 CIE 101 (323)
T ss_pred EEE
Confidence 876
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=24.36 E-value=2.3e+02 Score=29.98 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=45.8
Q ss_pred CCCCcccCCCeeeeccCcceee-eeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEE
Q 012917 24 GKEGWLVNDPNLLCALDMHTIA-LANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYF 102 (453)
Q Consensus 24 ~~~~wl~~~~~~~~sp~~~~la-~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~v 102 (453)
...+|..+ +..||+|..|| +++.+-+-|..=....+...+.... ----.++.|+ .|-.+|+.|++.+=+
T Consensus 204 ~~ggwvh~---v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~-----~lP~ls~~~i--se~~vv~ag~~c~P~ 273 (361)
T KOG1523|consen 204 SSGGWVHG---VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA-----QLPLLSVSWI--SENSVVAAGYDCGPV 273 (361)
T ss_pred cCCCceee---eEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc-----cCCceeeEee--cCCceeecCCCCCce
Confidence 45678776 67788888877 4555555443211111000011000 0113344443 677899999997777
Q ss_pred EEEe-cCCcEeeecc
Q 012917 103 LVYD-LKGDLVHRQL 116 (453)
Q Consensus 103 rfyt-e~G~LL~sQ~ 116 (453)
.|-+ +.|-|.|.-.
T Consensus 274 lf~~~~~~~l~~~~~ 288 (361)
T KOG1523|consen 274 LFVTDEEGGLSFARR 288 (361)
T ss_pred EEEeccccceeeehh
Confidence 6654 7777766544
No 219
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=23.83 E-value=2.2e+02 Score=26.20 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=53.6
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEecc------ccccCccCCCCC-----CcCcEEEEEeCCCCceEEEe
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQP------TYRFGSSMASSP-----YVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~------~~~~~g~~~~~~-----~~~~~~~lld~~~g~l~~i~ 449 (453)
-|.+.--..|.+.|.+-.+|.-|+.+.-++++.+--. ....-|.....| |..-+..|.||.+|.--++|
T Consensus 42 ~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~L~ 121 (135)
T TIGR03054 42 WLVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIELN 121 (135)
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEEEe
Confidence 4667777899999999999999999998888765422 122233333445 55689999999999988888
Q ss_pred cc
Q 012917 450 RS 451 (453)
Q Consensus 450 ~~ 451 (453)
.|
T Consensus 122 aF 123 (135)
T TIGR03054 122 AF 123 (135)
T ss_pred ec
Confidence 65
No 220
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=23.72 E-value=1.6e+02 Score=30.78 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=38.5
Q ss_pred eEEEECCCCCEEEEEc-CCCcEEEEEcCCceEEE------EecccccceeeE
Q 012917 311 ERLTLSPSGSLAAITD-SLGRILLLDTQALVVVR------LWKGYRDASCVF 355 (453)
Q Consensus 311 ~~i~lsP~~~laa~tD-slGRV~LiD~~~~~ivR------mWKGyRdAqc~W 355 (453)
..+.++|+|..+.++| .-++|.++|..+..++| +=.|.+.+...+
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEE
Confidence 7899999999888876 89999999999999997 666777776665
No 221
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.54 E-value=1.4e+02 Score=19.38 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEEeccccEEEEEe-cCCcEeee
Q 012917 92 ALAVGTSRGYFLVYD-LKGDLVHR 114 (453)
Q Consensus 92 ~I~VG~ssG~vrfyt-e~G~LL~s 114 (453)
.+.+|..+|+|..++ ++|.++-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 466788999999999 47888764
No 222
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.52 E-value=1.5e+02 Score=33.77 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=38.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
+.-+.-...+|+++|.|.|+|..-..|-|=++.+++|..||.|-
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~ 439 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ 439 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe
Confidence 55556678899999999999999999999999999999999763
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.26 E-value=2.5e+02 Score=30.34 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=63.9
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-..++.+.|+|+++-++|.-|-+-.||+.++..+-. +||.--+- .=|.+ -|. + -++--..
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi-rsih~-------------hp~----~-~~las~G 309 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI-RSIHC-------------HPT----H-PVLASCG 309 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc-ceEEE-------------cCC----C-ceEEeec
Confidence 356889999999999999999999999999998876 77764411 01111 111 1 1444567
Q ss_pred CCCeEEEeecCCCCeEEEEEecC--CeEEeccccc
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAK--GSKILQPTYR 420 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~--~~~Ll~~~~~ 420 (453)
.+..|.|+++++-.-++.+.|.. .+.|+...-+
T Consensus 310 LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred cceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 78899999999966666665543 3555554433
No 224
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=23.22 E-value=4.8e+02 Score=23.98 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=51.1
Q ss_pred EeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCC
Q 012917 55 INWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRD 133 (453)
Q Consensus 55 ~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~ 133 (453)
..|+.. .+.+-|+-.+.+ .++...+.++.+.-.+.++..+|.|..|+ .+|.++.+..+ ++++...-
T Consensus 6 ~~~d~~-tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~------- 72 (238)
T PF13360_consen 6 SALDPR-TGKELWSYDLGP----GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP------- 72 (238)
T ss_dssp EEEETT-TTEEEEEEECSS----SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-------
T ss_pred EEEECC-CCCEEEEEECCC----CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-------
Confidence 344442 466889888733 24444544553444566668999999999 59999988877 44433320
Q ss_pred CCcCCCCCeEEEEeCCe-EEEEe
Q 012917 134 LTQDTAEEEVCVVMPGV-LARFD 155 (453)
Q Consensus 134 ~~~~~~~eel~Ilyp~~-i~~id 155 (453)
......++|...+. +..+|
T Consensus 73 ---~~~~~~v~v~~~~~~l~~~d 92 (238)
T PF13360_consen 73 ---VVDGGRVYVGTSDGSLYALD 92 (238)
T ss_dssp ---EEETTEEEEEETTSEEEEEE
T ss_pred ---eecccccccccceeeeEecc
Confidence 11145567666543 44443
No 225
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.19 E-value=2.2e+02 Score=33.03 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=54.8
Q ss_pred CeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 308 RKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 308 R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
|+++.++-.|.. .-+.||-+.-||=++|.....+|.-+||+|.++= |.... ...-+| -+|.+
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~As--------fs~Dgk------~IVs~ 564 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISAS--------FSSDGK------HIVSA 564 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeee--------EccCCC------EEEEe
Confidence 478888888844 4567777888999999999999999999998543 11100 111112 35777
Q ss_pred CCCCeEEEeecCCCCe
Q 012917 387 PRKGIIEVWQMRTGPR 402 (453)
Q Consensus 387 prRg~lEVW~~~~G~R 402 (453)
..+.-|-||+++.-++
T Consensus 565 seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFNS 580 (712)
T ss_pred ecCceEEEEeCCCCcc
Confidence 7889999999865544
No 226
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=23.13 E-value=3.3e+02 Score=20.39 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCcEEEEEEEEeCCcEEEEEecc---ccEEEEEecCCcEe
Q 012917 75 ASEYITAIEWLVFEEMRALAVGTS---RGYFLVYDLKGDLV 112 (453)
Q Consensus 75 ~~e~ITs~~~lp~~dw~~I~VG~s---sG~vrfyte~G~LL 112 (453)
++..|+.+.-.-.++....-|-+. .++-..|+.+|.+|
T Consensus 21 p~~~i~~v~~~~~~~~~~Y~v~l~~~~~~~~v~fd~~G~~l 61 (61)
T PF11396_consen 21 PGAKIKEVEKETDPGGKYYEVELKKGGNEYEVYFDANGNWL 61 (61)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEETETTTSEEEEEETTS-EE
T ss_pred CCCeEEEEEEEEcCCCCEEEEEEEEeCCeEEEEEcCCCCCC
Confidence 467888888888888888889999 99999999999886
No 227
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=22.83 E-value=2.7e+02 Score=24.83 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=33.9
Q ss_pred EEEEEEEEeCCc--EEEEEeccccEEEEEecCCcEeeecccCccceeEEE
Q 012917 79 ITAIEWLVFEEM--RALAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLR 126 (453)
Q Consensus 79 ITs~~~lp~~dw--~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~pV~~ik 126 (453)
|||++..++.+. .=++||..+..+|+|... .++.+.=-.+.|..|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~ 49 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLC 49 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEE
Confidence 789999998444 789999999999999754 4444443345666665
No 228
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=1.4e+02 Score=35.13 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=36.8
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEE
Q 012917 313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEML 359 (453)
Q Consensus 313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~ 359 (453)
=|.||++..+|+.++.|||..+|- .-..+|=||.|-.-++.++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~ 74 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYIL 74 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcc
Confidence 367889999999999999999874 3456699999988767666553
No 229
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.80 E-value=2.7e+02 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCcEEEEEeccccEEEEEecCCcEeeecccCccc
Q 012917 88 EEMRALAVGTSRGYFLVYDLKGDLVHRQLIHPGR 121 (453)
Q Consensus 88 ~dw~~I~VG~ssG~vrfyte~G~LL~sQ~lh~~p 121 (453)
||..+++||-+.|-+..|+-.=.-+-.|++.|++
T Consensus 309 p~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~ 342 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDA 342 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeecCccceeeccccC
Confidence 7778999999999999999877777777776554
No 230
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=22.49 E-value=1e+02 Score=33.42 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=56.6
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
++.-+.--+..+..|++|+|+...|..|-|=.++.. ...|.|.++.-++++-=+-... +| .| |
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSp-nD----------sk-----F 195 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSP-ND----------SK-----F 195 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCC-CC----------ce-----e
Confidence 355555567788999999999999999999999874 5667788777765544333211 12 11 3
Q ss_pred EEEEcCCCCeEEEeecCCC
Q 012917 382 LAIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G 400 (453)
.-+.-+|+|+||+....
T Consensus 196 --~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 196 --LTCSDDGTIKIWDFRMP 212 (464)
T ss_pred --EEecCCCeEEEEeccCC
Confidence 45667999999998753
No 231
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=22.27 E-value=2.2e+02 Score=19.70 Aligned_cols=32 Identities=28% Similarity=0.265 Sum_probs=22.7
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILL 333 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~L 333 (453)
.+.|......+..-++.|++...+|..|++.-
T Consensus 9 ~~~~p~G~~~~~~YD~~Grl~~~tdp~g~~~~ 40 (42)
T TIGR01643 9 GSTDADGTTTRYTYDAAGRLVEITDADGGSTR 40 (42)
T ss_pred EEECCCCCEEEEEECCCCCEEEEECCCCCEEE
Confidence 35566666777777777888888888887654
No 232
>PF14408 Actino_peptide: Ribosomally synthesized peptide in actinomycetes
Probab=22.20 E-value=99 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEECCCCCEEEEEcCCCcEEE
Q 012917 312 RLTLSPSGSLAAITDSLGRILL 333 (453)
Q Consensus 312 ~i~lsP~~~laa~tDslGRV~L 333 (453)
++.++|.-++++..|+.|+++-
T Consensus 5 ~~~lDP~TQ~~v~~D~~G~~ve 26 (59)
T PF14408_consen 5 RVVLDPDTQTGVYVDRDGPVVE 26 (59)
T ss_pred eeeECCCceeeEEEcCCCCcee
Confidence 5679999999999999998754
No 233
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=22.05 E-value=69 Score=37.40 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=33.5
Q ss_pred EEEEEeccccEEEEEecCCcEeeec-ccCccceeEEEEee
Q 012917 91 RALAVGTSRGYFLVYDLKGDLVHRQ-LIHPGRILKLRVRG 129 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyte~G~LL~sQ-~lh~~pV~~ik~r~ 129 (453)
-.+||||++|.|.+|+..-.+++.. ..|.+-|..|+--+
T Consensus 438 pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g 477 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG 477 (1062)
T ss_pred eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc
Confidence 4689999999999999998888877 68999998888544
No 234
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.00 E-value=1.6e+02 Score=19.30 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=13.9
Q ss_pred EEcCCCcEEEEEcCCceEE
Q 012917 324 ITDSLGRILLLDTQALVVV 342 (453)
Q Consensus 324 ~tDslGRV~LiD~~~~~iv 342 (453)
+.|+.|+|++-|..+..|.
T Consensus 8 av~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEETTSEEEEEECCCTEEE
T ss_pred EEeCCCCEEEEECCCCEEE
Confidence 4458888888887777654
No 235
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.99 E-value=8.6e+02 Score=24.86 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=53.6
Q ss_pred cCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC------
Q 012917 326 DSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT------ 399 (453)
Q Consensus 326 DslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~------ 399 (453)
-..=.|++-|..+|+-+.-..|+-.--.+-.. -+ .+ ......++-.|..|++|-
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilalys----wn--------------~~--m~~sgsqdktirfwdlrv~~~v~~ 219 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILALYS----WN--------------GA--MFASGSQDKTIRFWDLRVNSCVNT 219 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEEEE----ec--------------Cc--EEEccCCCceEEEEeeeccceeee
Confidence 34457888899999888888777652222111 00 01 224456677788888763
Q ss_pred --------C---CeEEEEEecCCeEEeccccccCccC
Q 012917 400 --------G---PRLLTIQCAKGSKILQPTYRFGSSM 425 (453)
Q Consensus 400 --------G---~RV~a~~v~~~~~Ll~~~~~~~g~~ 425 (453)
| .-|+++-|.+.+|||-.++.-.+|.
T Consensus 220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 3 5688889999999999988777643
No 236
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=21.82 E-value=1.9e+02 Score=22.25 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=26.8
Q ss_pred CCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEeee
Q 012917 76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVHR 114 (453)
Q Consensus 76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~s 114 (453)
+=.|+++...|+++..=|.+ .+|-+.+.|++|.-|+.
T Consensus 11 ~~~v~~v~~spi~GlyeV~~--~~~~i~Y~~~dg~yli~ 47 (57)
T PF10411_consen 11 GLKVESVSPSPIPGLYEVVL--KGGGILYVDEDGRYLIQ 47 (57)
T ss_dssp T-TCEEEEE-SSTTEEEEEE---TTEEEEEETTSSEEEE
T ss_pred CCceeEEEcCCCCCeEEEEE--CCCeEEEEcCCCCEEEE
Confidence 56799999999999755555 67778888899977664
No 237
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.48 E-value=1.3e+02 Score=31.51 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=42.2
Q ss_pred CCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC--CcEee-ecccCccceeEEE
Q 012917 71 LSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK--GDLVH-RQLIHPGRILKLR 126 (453)
Q Consensus 71 l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~--G~LL~-sQ~lh~~pV~~ik 126 (453)
+..++++.|++++.=| -.|..++.|-=+|.||.|..+ |.+.= .|.=|+.||+-+.
T Consensus 22 v~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~ 79 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVC 79 (347)
T ss_pred cCCCcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEE
Confidence 4344679999999999 477789999999999999954 44432 4566788888776
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=21.29 E-value=68 Score=40.74 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=57.0
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
..+.|+-.|..++....---|-|.|+|+...+.++-|+. |. . +. ...-.+.
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~-------------------~~--~f~~~ss 2388 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-T-------------------RE--YFVTGSS 2388 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-h-------------------hh--eeeccCc
Confidence 467788999999999999999999999999999999987 22 0 01 3367888
Q ss_pred CCeEEEeecCCCCeEEEEE
Q 012917 389 KGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~ 407 (453)
||.+.||++-.-..+.+|.
T Consensus 2389 ~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ccceEEEEccccchhhcCc
Confidence 9999999998776666654
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=21.28 E-value=2.2e+02 Score=32.02 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=56.4
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
-+..++.||||++.|+.--.|-.=++|-.+..++-+.|.|=-+- +-+.=..| +| +++-...
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL---LCvcWSPD----------GK------yIvtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL---LCVCWSPD----------GK------YIVTGGE 352 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce---EEEEEcCC----------cc------EEEecCC
Confidence 67789999999999998777877788888888889999996642 22221222 12 4445677
Q ss_pred CCeEEEeecCCCCeEEEE
Q 012917 389 KGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~ 406 (453)
+-+|-||++.. .||.|.
T Consensus 353 DDLVtVwSf~e-rRVVAR 369 (636)
T KOG2394|consen 353 DDLVTVWSFEE-RRVVAR 369 (636)
T ss_pred cceEEEEEecc-ceEEEe
Confidence 99999999975 455554
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=21.10 E-value=7.3e+02 Score=26.31 Aligned_cols=56 Identities=18% Similarity=0.330 Sum_probs=44.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEE-EEEcCCceEEEE-ecccccceeeEEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRIL-LLDTQALVVVRL-WKGYRDASCVFMEM 358 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~-LiD~~~~~ivRm-WKGyRdAqc~Wi~~ 358 (453)
++-+.-.+..++|.=+|.++|++..-|-++ ++|+.+|..+.- =.|+-.|...=|..
T Consensus 177 I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 177 INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 555666788999999999999999999876 889999998874 45777777666554
No 241
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=20.70 E-value=1.4e+02 Score=30.95 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCC-cEeeecccCccceeEEEE
Q 012917 75 ASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKG-DLVHRQLIHPGRILKLRV 127 (453)
Q Consensus 75 ~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G-~LL~sQ~lh~~pV~~ik~ 127 (453)
+..+||+..|=|+.+ ||+-|=.+|.++.|+ .+| .++=|-..|...|..|+.
T Consensus 146 ~~skit~a~Wg~l~~--~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 146 PDSKITSALWGPLGE--TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF 198 (327)
T ss_pred CccceeeeeecccCC--EEEEecCCCcEEEEEcccCceeeechhhhccccccccc
No 242
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=20.37 E-value=1.4e+02 Score=27.63 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=30.4
Q ss_pred CceeEeecCCCCCCCcEEEEEEEEe-CCcEEEEEeccccEEEEEe-cCCcEeeec
Q 012917 63 LVAKIRPELSPIASEYITAIEWLVF-EEMRALAVGTSRGYFLVYD-LKGDLVHRQ 115 (453)
Q Consensus 63 ~~~~~~g~l~~~~~e~ITs~~~lp~-~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ 115 (453)
+.+.|+-+++. +.... |. .+- -|.|++.+|.|+.++ ++|+++.+.
T Consensus 56 G~~~W~~~~~~-~~~~~------~~~~~~-~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 56 GKVLWRFDLPG-PISGA------PVVDGG-RVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp SEEEEEEECSS-CGGSG------EEEETT-EEEEEETTSEEEEEETTTSCEEEEE
T ss_pred CCEEEEeeccc-cccce------eeeccc-ccccccceeeeEecccCCcceeeee
Confidence 56889888833 22222 33 344 446666888999998 999999983
No 243
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=20.25 E-value=1.6e+02 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917 317 PSGSLAAITDSLGRILLLDTQALVVVRL 344 (453)
Q Consensus 317 P~~~laa~tDslGRV~LiD~~~~~ivRm 344 (453)
+.-++.+..|..|||+.+|..+..+.|+
T Consensus 79 ~~~~~vvl~~~~G~Vy~yd~~~~~l~~l 106 (125)
T PF02393_consen 79 FRDRLVVLVGESGRVYAYDPEDDRLYRL 106 (125)
T ss_pred ccceEEEEEeCCCeEEEEEcCCCEEEEE
Confidence 4567888899999999999999887765
No 244
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=20.17 E-value=1.8e+02 Score=30.16 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm 344 (453)
...+....+.+ .|+.+.++|.-||.+|+|+.+..+..+
T Consensus 64 ~~~~~~~F~al--~gskIv~~d~~~~t~vyDt~t~av~~~ 101 (342)
T PF07893_consen 64 RGPWSMDFFAL--HGSKIVAVDQSGRTLVYDTDTRAVATG 101 (342)
T ss_pred CCCceeEEEEe--cCCeEEEEcCCCCeEEEECCCCeEecc
Confidence 44455666666 889999999999999999999988843
Done!