Query 012917
Match_columns 453
No_of_seqs 98 out of 117
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ery_A WD repeat-containing pr 98.5 0.00016 5.6E-09 67.5 29.0 85 308-408 193-277 (312)
2 3f3f_A Nucleoporin SEH1; struc 98.5 9.5E-05 3.3E-09 67.7 26.2 94 34-129 16-120 (351)
3 1r5m_A SIR4-interacting protei 98.5 0.00013 4.5E-09 69.5 27.5 88 303-410 243-330 (425)
4 1pgu_A Actin interacting prote 98.4 5.3E-05 1.8E-09 76.6 24.5 248 33-409 22-293 (615)
5 2ynn_A Coatomer subunit beta'; 98.3 0.0015 5.1E-08 61.6 29.6 85 308-411 185-271 (304)
6 1erj_A Transcriptional repress 98.2 0.00085 2.9E-08 65.8 27.4 119 306-449 255-386 (393)
7 1k8k_C P40, ARP2/3 complex 41 98.2 0.0013 4.6E-08 61.8 27.3 256 33-399 12-274 (372)
8 3k26_A Polycomb protein EED; W 98.2 0.00075 2.6E-08 63.0 25.0 271 35-399 75-366 (366)
9 3ei3_B DNA damage-binding prot 98.2 0.00028 9.4E-09 67.8 22.5 288 34-449 78-379 (383)
10 2ymu_A WD-40 repeat protein; u 98.2 0.0015 5.3E-08 65.9 27.9 86 303-409 463-548 (577)
11 3v7d_B Cell division control p 98.1 0.0053 1.8E-07 60.5 30.8 86 303-409 306-391 (464)
12 1nr0_A Actin interacting prote 98.1 0.0007 2.4E-08 70.9 25.6 89 302-409 185-280 (611)
13 3dw8_B Serine/threonine-protei 98.1 0.0009 3.1E-08 65.0 24.6 81 306-409 284-382 (447)
14 3zwl_B Eukaryotic translation 98.1 0.0055 1.9E-07 56.9 29.4 87 34-128 37-124 (369)
15 3zwl_B Eukaryotic translation 98.1 0.0028 9.6E-08 59.0 26.4 83 308-409 176-259 (369)
16 1got_B GT-beta; complex (GTP-b 98.1 0.0015 5.3E-08 62.5 24.9 86 303-407 180-265 (340)
17 4ery_A WD repeat-containing pr 98.1 0.0036 1.2E-07 58.4 26.7 88 305-410 147-234 (312)
18 3odt_A Protein DOA1; ubiquitin 98.1 0.0019 6.6E-08 58.9 23.9 239 34-408 64-305 (313)
19 3jrp_A Fusion protein of prote 98.0 0.0038 1.3E-07 58.4 26.0 92 34-129 16-111 (379)
20 2ymu_A WD-40 repeat protein; u 98.0 0.0019 6.4E-08 65.3 25.1 86 34-127 21-106 (577)
21 1yfq_A Cell cycle arrest prote 98.0 0.0032 1.1E-07 58.6 24.9 88 307-409 193-292 (342)
22 3mkq_A Coatomer beta'-subunit; 98.0 0.0069 2.4E-07 63.9 29.6 246 34-409 18-269 (814)
23 4gqb_B Methylosome protein 50; 98.0 0.0031 1.1E-07 61.6 24.7 81 303-402 253-334 (344)
24 1vyh_C Platelet-activating fac 97.9 0.0057 2E-07 60.5 26.8 74 318-410 307-380 (410)
25 3vl1_A 26S proteasome regulato 97.9 0.016 5.5E-07 55.7 29.3 89 33-128 101-190 (420)
26 3vu4_A KMHSV2; beta-propeller 97.9 0.0099 3.4E-07 57.6 27.5 83 300-401 188-273 (355)
27 2pm9_A Protein WEB1, protein t 97.9 0.0026 8.9E-08 60.9 22.6 86 307-410 214-305 (416)
28 4g56_B MGC81050 protein; prote 97.9 0.0024 8.2E-08 62.2 22.6 79 306-403 268-347 (357)
29 4gga_A P55CDC, cell division c 97.9 0.024 8.3E-07 55.7 32.6 85 35-126 111-196 (420)
30 4a11_B DNA excision repair pro 97.9 0.011 3.9E-07 55.8 26.3 276 34-410 48-334 (408)
31 1got_B GT-beta; complex (GTP-b 97.9 0.0081 2.8E-07 57.5 25.6 69 309-396 272-340 (340)
32 4aow_A Guanine nucleotide-bind 97.9 0.018 6.1E-07 53.3 30.3 82 305-407 213-294 (340)
33 1k8k_C P40, ARP2/3 complex 41 97.8 0.0045 1.5E-07 58.1 22.9 85 307-410 142-244 (372)
34 3mmy_A MRNA export factor; mRN 97.8 0.0032 1.1E-07 58.5 21.1 83 308-409 274-359 (368)
35 3ei3_B DNA damage-binding prot 97.8 0.013 4.6E-07 56.0 25.2 89 35-128 124-213 (383)
36 2pm9_A Protein WEB1, protein t 97.8 0.0052 1.8E-07 58.8 22.0 82 305-404 260-342 (416)
37 1p22_A F-BOX/WD-repeat protein 97.7 0.022 7.5E-07 56.1 25.7 86 33-127 135-221 (435)
38 1gxr_A ESG1, transducin-like e 97.6 0.036 1.2E-06 50.8 32.0 78 308-405 225-302 (337)
39 3dm0_A Maltose-binding peripla 97.6 0.016 5.4E-07 61.2 25.8 89 303-412 557-645 (694)
40 3k26_A Polycomb protein EED; W 97.6 0.044 1.5E-06 50.9 27.2 92 35-128 24-124 (366)
41 4gqb_B Methylosome protein 50; 97.6 0.00057 2E-08 66.9 12.2 88 303-408 123-210 (344)
42 3sfz_A APAF-1, apoptotic pepti 97.5 0.019 6.3E-07 64.3 25.5 88 34-127 662-751 (1249)
43 2pbi_B Guanine nucleotide-bind 97.5 0.065 2.2E-06 51.8 26.2 86 303-407 192-279 (354)
44 3i2n_A WD repeat-containing pr 97.5 0.041 1.4E-06 51.1 23.4 79 307-403 209-295 (357)
45 3dwl_C Actin-related protein 2 97.5 0.011 3.6E-07 56.3 19.7 228 34-350 16-252 (377)
46 2ynn_A Coatomer subunit beta'; 97.5 0.00076 2.6E-08 63.6 11.4 91 302-411 8-98 (304)
47 3fm0_A Protein CIAO1; WDR39,SG 97.4 0.094 3.2E-06 50.2 26.0 90 34-127 21-113 (345)
48 3vl1_A 26S proteasome regulato 97.4 0.0016 5.4E-08 62.9 12.6 88 303-409 135-222 (420)
49 3jro_A Fusion protein of prote 97.4 0.019 6.4E-07 62.0 22.3 92 35-129 15-109 (753)
50 1gxr_A ESG1, transducin-like e 97.4 0.0046 1.6E-07 56.8 15.2 87 303-408 137-223 (337)
51 3i2n_A WD repeat-containing pr 97.4 0.094 3.2E-06 48.6 25.6 81 305-403 257-357 (357)
52 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.05 1.7E-06 53.5 23.4 77 309-408 281-357 (445)
53 2vdu_B TRNA (guanine-N(7)-)-me 97.3 0.15 5.2E-06 50.4 31.2 136 306-446 240-397 (450)
54 1vyh_C Platelet-activating fac 97.3 0.0042 1.4E-07 61.5 15.3 92 301-411 186-277 (410)
55 1yfq_A Cell cycle arrest prote 97.3 0.097 3.3E-06 48.4 23.2 44 307-350 251-295 (342)
56 3ow8_A WD repeat-containing pr 97.2 0.0019 6.6E-08 61.9 11.5 116 303-449 202-318 (321)
57 4aez_A CDC20, WD repeat-contai 97.2 0.17 5.9E-06 49.1 31.9 50 76-127 134-184 (401)
58 3ow8_A WD repeat-containing pr 97.2 0.0019 6.6E-08 61.9 11.2 86 304-410 161-248 (321)
59 1r5m_A SIR4-interacting protei 97.2 0.003 1E-07 60.0 11.8 86 306-411 107-192 (425)
60 3gre_A Serine/threonine-protei 97.2 0.0018 6.3E-08 63.2 10.5 90 306-410 213-303 (437)
61 1erj_A Transcriptional repress 97.1 0.0045 1.6E-07 60.6 13.1 86 306-410 122-207 (393)
62 4h5i_A Guanine nucleotide-exch 97.1 0.0031 1E-07 61.7 11.0 79 302-399 264-343 (365)
63 4e54_B DNA damage-binding prot 97.0 0.0071 2.4E-07 59.9 13.3 100 304-407 293-395 (435)
64 2aq5_A Coronin-1A; WD40 repeat 97.0 0.0041 1.4E-07 60.4 11.2 80 305-402 174-257 (402)
65 3frx_A Guanine nucleotide-bind 97.0 0.0048 1.6E-07 58.7 11.4 88 300-407 58-145 (319)
66 3lrv_A PRE-mRNA-splicing facto 96.9 0.0027 9.2E-08 60.6 9.3 84 307-408 125-211 (343)
67 3f3f_A Nucleoporin SEH1; struc 96.9 0.0076 2.6E-07 54.9 11.9 82 302-400 6-91 (351)
68 4aez_A CDC20, WD repeat-contai 96.9 0.012 4.2E-07 57.3 14.1 89 303-409 213-303 (401)
69 4ggc_A P55CDC, cell division c 96.9 0.23 8E-06 45.2 30.5 85 35-126 31-116 (318)
70 3jro_A Fusion protein of prote 96.9 0.18 6.3E-06 54.2 24.1 68 318-401 169-240 (753)
71 2aq5_A Coronin-1A; WD40 repeat 96.9 0.0053 1.8E-07 59.7 10.8 89 299-406 123-214 (402)
72 3dw8_B Serine/threonine-protei 96.8 0.014 4.8E-07 56.5 13.5 89 303-410 222-327 (447)
73 3odt_A Protein DOA1; ubiquitin 96.8 0.0076 2.6E-07 54.9 10.5 85 306-411 183-267 (313)
74 3mmy_A MRNA export factor; mRN 96.8 0.016 5.6E-07 53.7 12.7 89 303-411 82-172 (368)
75 4g56_B MGC81050 protein; prote 96.7 0.0047 1.6E-07 60.1 9.3 85 303-405 135-219 (357)
76 1sq9_A Antiviral protein SKI8; 96.7 0.0067 2.3E-07 57.8 10.0 82 307-407 233-330 (397)
77 4gga_A P55CDC, cell division c 96.7 0.014 4.7E-07 57.5 12.4 76 303-399 143-218 (420)
78 1pgu_A Actin interacting prote 96.7 0.0072 2.5E-07 60.9 10.5 127 303-450 484-612 (615)
79 3jrp_A Fusion protein of prote 96.7 0.0065 2.2E-07 56.8 9.5 84 301-401 5-90 (379)
80 3mkq_A Coatomer beta'-subunit; 96.7 0.014 4.6E-07 61.7 12.8 90 302-410 8-97 (814)
81 1l0q_A Surface layer protein; 96.6 0.063 2.2E-06 51.1 16.3 84 309-411 75-159 (391)
82 1l0q_A Surface layer protein; 96.5 0.066 2.3E-06 51.0 15.8 83 309-410 33-116 (391)
83 3vgz_A Uncharacterized protein 96.5 0.071 2.4E-06 49.6 15.2 87 310-411 187-274 (353)
84 1pby_B Quinohemoprotein amine 96.5 0.022 7.7E-07 52.4 11.5 87 308-416 241-327 (337)
85 2pbi_B Guanine nucleotide-bind 96.4 0.019 6.6E-07 55.5 11.4 91 303-410 150-240 (354)
86 3sfz_A APAF-1, apoptotic pepti 96.4 0.017 5.9E-07 64.5 12.4 90 303-411 611-700 (1249)
87 3iz6_a 40S ribosomal protein R 96.4 0.053 1.8E-06 52.7 14.5 90 302-406 244-336 (380)
88 2xzm_R RACK1; ribosome, transl 96.4 0.043 1.5E-06 52.3 13.5 78 302-398 71-148 (343)
89 1sq9_A Antiviral protein SKI8; 96.4 0.046 1.6E-06 51.9 13.6 84 305-408 184-276 (397)
90 4ggc_A P55CDC, cell division c 96.4 0.035 1.2E-06 50.8 12.3 53 303-355 63-115 (318)
91 3frx_A Guanine nucleotide-bind 96.3 0.024 8.1E-07 53.8 11.1 91 301-410 11-107 (319)
92 3gre_A Serine/threonine-protei 96.3 0.043 1.5E-06 53.4 13.1 78 315-411 178-257 (437)
93 4a11_B DNA excision repair pro 96.3 0.033 1.1E-06 52.6 11.6 90 303-410 39-142 (408)
94 2vdu_B TRNA (guanine-N(7)-)-me 96.2 0.016 5.5E-07 57.5 9.5 87 303-409 191-281 (450)
95 2xzm_R RACK1; ribosome, transl 96.1 0.048 1.6E-06 52.0 12.2 91 301-410 15-118 (343)
96 1jmx_B Amine dehydrogenase; ox 96.1 0.04 1.4E-06 51.1 10.9 80 308-409 255-335 (349)
97 2hes_X YDR267CP; beta-propelle 96.0 0.032 1.1E-06 53.2 10.3 80 302-400 102-185 (330)
98 3bws_A Protein LP49; two-domai 95.9 0.15 5.2E-06 49.2 14.8 87 303-407 165-251 (433)
99 3bg1_A Protein SEC13 homolog; 95.9 1.2 4.1E-05 41.9 21.6 91 35-128 19-112 (316)
100 3bws_A Protein LP49; two-domai 95.8 0.07 2.4E-06 51.6 11.9 81 309-408 124-209 (433)
101 2pm7_B Protein transport prote 95.8 0.061 2.1E-06 50.3 11.1 82 303-401 5-88 (297)
102 3dm0_A Maltose-binding peripla 95.7 0.056 1.9E-06 57.0 11.7 79 303-400 426-504 (694)
103 3vgz_A Uncharacterized protein 95.7 0.2 6.8E-06 46.5 14.2 81 309-409 232-313 (353)
104 3iz6_a 40S ribosomal protein R 95.7 0.026 8.8E-07 55.0 8.3 79 310-403 301-379 (380)
105 3bg1_A Protein SEC13 homolog; 95.7 0.047 1.6E-06 51.7 9.9 87 303-406 9-99 (316)
106 3scy_A Hypothetical bacterial 95.7 0.18 6.3E-06 47.8 14.0 32 310-341 213-245 (361)
107 1p22_A F-BOX/WD-repeat protein 95.7 0.064 2.2E-06 52.8 11.2 76 313-409 137-212 (435)
108 3lrv_A PRE-mRNA-splicing facto 95.7 0.042 1.4E-06 52.3 9.5 75 309-403 172-248 (343)
109 3v7d_B Cell division control p 95.6 0.049 1.7E-06 53.5 10.0 87 303-410 117-203 (464)
110 2ovr_B FBW7, F-BOX/WD repeat p 95.6 0.032 1.1E-06 54.9 8.5 38 314-351 124-161 (445)
111 3fm0_A Protein CIAO1; WDR39,SG 95.5 0.12 4.1E-06 49.4 11.9 79 305-402 59-139 (345)
112 1nr0_A Actin interacting prote 95.4 0.078 2.7E-06 55.3 11.3 85 303-406 143-228 (611)
113 1pby_B Quinohemoprotein amine 95.4 0.23 7.7E-06 45.6 13.1 78 310-410 84-174 (337)
114 3dwl_C Actin-related protein 2 95.3 0.053 1.8E-06 51.4 8.8 77 303-398 96-176 (377)
115 3vu4_A KMHSV2; beta-propeller 95.3 0.13 4.5E-06 49.6 11.7 88 302-410 14-101 (355)
116 2hes_X YDR267CP; beta-propelle 95.2 0.13 4.5E-06 48.8 11.3 80 303-399 149-230 (330)
117 4e54_B DNA damage-binding prot 95.2 0.14 4.9E-06 50.4 11.8 80 303-400 115-197 (435)
118 2oaj_A Protein SNI1; WD40 repe 95.1 0.17 5.7E-06 56.3 13.2 81 306-407 16-96 (902)
119 4aow_A Guanine nucleotide-bind 95.0 0.18 6.1E-06 46.5 11.2 83 301-402 80-162 (340)
120 2oaj_A Protein SNI1; WD40 repe 94.8 0.075 2.6E-06 59.1 9.6 97 300-408 568-673 (902)
121 2xyi_A Probable histone-bindin 94.8 0.2 6.8E-06 49.5 11.6 92 299-408 173-275 (430)
122 1nir_A Nitrite reductase; hemo 94.5 0.57 1.9E-05 48.9 14.7 82 310-408 181-266 (543)
123 1nir_A Nitrite reductase; hemo 94.4 0.2 6.8E-06 52.3 11.1 107 315-445 145-260 (543)
124 3o4h_A Acylamino-acid-releasin 94.4 0.078 2.7E-06 54.4 7.9 119 303-448 190-320 (582)
125 2hqs_A Protein TOLB; TOLB, PAL 94.4 0.76 2.6E-05 45.6 14.7 47 302-349 173-222 (415)
126 2pm7_B Protein transport prote 94.3 0.54 1.9E-05 43.7 12.8 67 319-401 170-240 (297)
127 1ri6_A Putative isomerase YBHE 94.2 1.9 6.6E-05 39.3 16.1 29 310-338 180-209 (343)
128 2ecf_A Dipeptidyl peptidase IV 94.2 0.49 1.7E-05 49.6 13.4 43 307-349 36-84 (741)
129 2ojh_A Uncharacterized protein 94.1 0.36 1.2E-05 42.7 10.6 46 303-349 37-83 (297)
130 4h5i_A Guanine nucleotide-exch 94.0 0.38 1.3E-05 46.8 11.4 91 34-127 224-320 (365)
131 2j04_A TAU60, YPL007P, hypothe 94.0 0.37 1.3E-05 52.1 12.1 77 308-401 130-213 (588)
132 3pe7_A Oligogalacturonate lyas 93.9 0.51 1.7E-05 44.7 11.9 77 313-410 41-122 (388)
133 3u4y_A Uncharacterized protein 93.9 0.44 1.5E-05 44.1 11.2 84 307-409 40-127 (331)
134 2xyi_A Probable histone-bindin 93.9 0.38 1.3E-05 47.4 11.3 89 303-409 227-320 (430)
135 3hfq_A Uncharacterized protein 93.8 0.52 1.8E-05 44.3 11.7 34 308-341 40-75 (347)
136 3scy_A Hypothetical bacterial 93.7 1.3 4.6E-05 41.7 14.5 31 309-339 156-187 (361)
137 3u4y_A Uncharacterized protein 93.7 1.2 4.2E-05 41.0 13.8 74 310-402 178-255 (331)
138 2w18_A PALB2, fancn, partner a 93.6 0.71 2.4E-05 46.9 12.9 95 306-408 110-221 (356)
139 3hfq_A Uncharacterized protein 93.5 1.1 3.9E-05 41.9 13.5 122 311-450 190-327 (347)
140 2hqs_A Protein TOLB; TOLB, PAL 93.5 2.1 7.1E-05 42.4 16.0 40 306-345 221-263 (415)
141 2ojh_A Uncharacterized protein 93.5 0.94 3.2E-05 40.0 12.1 120 310-449 131-265 (297)
142 1ri6_A Putative isomerase YBHE 93.1 0.95 3.3E-05 41.4 12.0 82 307-408 230-321 (343)
143 1jmx_B Amine dehydrogenase; ox 93.1 0.41 1.4E-05 44.2 9.5 80 313-409 5-84 (349)
144 1jof_A Carboxy-CIS,CIS-muconat 92.7 3.3 0.00011 39.7 15.6 36 307-342 144-181 (365)
145 3pe7_A Oligogalacturonate lyas 92.6 1.6 5.6E-05 41.2 13.2 129 307-450 187-337 (388)
146 2j04_A TAU60, YPL007P, hypothe 92.5 0.93 3.2E-05 49.0 12.4 73 308-401 86-162 (588)
147 2oit_A Nucleoporin 214KDA; NH2 91.9 0.65 2.2E-05 46.8 9.9 84 303-406 145-229 (434)
148 2iwa_A Glutamine cyclotransfer 91.8 4.6 0.00016 39.0 15.4 116 302-444 14-137 (266)
149 4gq1_A NUP37; propeller, trans 91.8 0.44 1.5E-05 46.6 8.2 86 303-406 132-225 (393)
150 2oit_A Nucleoporin 214KDA; NH2 91.7 0.34 1.2E-05 48.8 7.6 81 307-405 92-187 (434)
151 4gq1_A NUP37; propeller, trans 91.5 1.5 5E-05 42.8 11.7 103 305-409 184-296 (393)
152 3azo_A Aminopeptidase; POP fam 91.4 0.82 2.8E-05 47.3 10.3 128 307-449 241-376 (662)
153 2j04_B YDR362CP, TAU91; beta p 91.3 0.63 2.1E-05 48.6 9.3 87 302-407 261-350 (524)
154 2oiz_A Aromatic amine dehydrog 90.8 1.2 4.1E-05 43.5 10.3 77 313-411 259-349 (361)
155 3fvz_A Peptidyl-glycine alpha- 90.8 7.9 0.00027 36.5 15.8 83 309-407 144-235 (329)
156 3sjl_D Methylamine dehydrogena 90.6 2.2 7.4E-05 43.5 12.3 81 314-412 39-131 (386)
157 3dsm_A Uncharacterized protein 90.5 6.1 0.00021 37.6 14.8 120 308-446 84-216 (328)
158 2z3z_A Dipeptidyl aminopeptida 90.4 2.4 8.4E-05 44.1 12.8 40 308-347 181-253 (706)
159 2z3z_A Dipeptidyl aminopeptida 90.2 1.9 6.6E-05 44.9 11.8 42 308-350 121-167 (706)
160 1xfd_A DIP, dipeptidyl aminope 89.2 0.21 7.1E-06 52.2 3.5 40 310-350 19-58 (723)
161 1k32_A Tricorn protease; prote 88.9 1.1 3.7E-05 50.0 9.1 46 305-350 376-421 (1045)
162 3c5m_A Oligogalacturonate lyas 88.9 4 0.00014 38.2 11.9 41 306-346 186-233 (396)
163 1xfd_A DIP, dipeptidyl aminope 88.6 2.6 8.8E-05 43.9 11.3 37 310-347 116-152 (723)
164 3no2_A Uncharacterized protein 88.6 9.2 0.00031 35.9 14.2 39 309-350 38-76 (276)
165 3azo_A Aminopeptidase; POP fam 88.4 3.1 0.00011 42.9 11.7 44 305-348 185-240 (662)
166 3fvz_A Peptidyl-glycine alpha- 88.4 12 0.00042 35.2 15.1 39 308-346 24-86 (329)
167 2w18_A PALB2, fancn, partner a 88.2 1.4 4.6E-05 44.9 8.5 68 312-397 288-355 (356)
168 2dg1_A DRP35, lactonase; beta 88.1 16 0.00054 33.7 15.4 44 302-345 39-82 (333)
169 3no2_A Uncharacterized protein 88.0 5.6 0.00019 37.3 12.3 116 309-446 78-199 (276)
170 2gop_A Trilobed protease; beta 87.0 7.1 0.00024 36.1 12.3 40 309-348 60-104 (347)
171 3iuj_A Prolyl endopeptidase; h 87.0 4.9 0.00017 42.7 12.5 49 308-356 129-183 (693)
172 2j04_B YDR362CP, TAU91; beta p 86.7 1.6 5.4E-05 45.6 8.3 84 303-407 304-394 (524)
173 2ecf_A Dipeptidyl peptidase IV 86.7 5.7 0.0002 41.4 12.6 77 310-407 211-329 (741)
174 2bkl_A Prolyl endopeptidase; m 86.6 4.1 0.00014 43.0 11.6 35 308-342 121-160 (695)
175 3e5z_A Putative gluconolactona 86.2 15 0.00051 33.5 13.9 46 300-347 20-66 (296)
176 1qks_A Cytochrome CD1 nitrite 85.5 17 0.00059 38.3 15.7 85 310-409 199-285 (567)
177 3dsm_A Uncharacterized protein 85.2 20 0.00069 33.9 14.7 81 309-410 45-125 (328)
178 3e5z_A Putative gluconolactona 84.4 13 0.00046 33.8 12.6 81 308-411 172-257 (296)
179 1qks_A Cytochrome CD1 nitrite 83.9 7.9 0.00027 40.9 12.2 108 315-445 163-278 (567)
180 2xdw_A Prolyl endopeptidase; a 83.8 12 0.0004 39.6 13.5 36 309-344 126-166 (710)
181 2z2n_A Virginiamycin B lyase; 83.8 23 0.00079 31.5 15.3 38 306-344 13-50 (299)
182 1z68_A Fibroblast activation p 83.5 1.4 4.7E-05 46.2 6.1 38 312-350 20-57 (719)
183 2iwa_A Glutamine cyclotransfer 83.2 18 0.00061 34.8 13.4 118 308-448 66-188 (266)
184 3c5m_A Oligogalacturonate lyas 83.2 4.9 0.00017 37.6 9.3 80 310-410 38-122 (396)
185 3sjl_D Methylamine dehydrogena 82.8 5.3 0.00018 40.6 9.9 80 312-409 82-179 (386)
186 1jof_A Carboxy-CIS,CIS-muconat 82.1 5.1 0.00017 38.3 9.1 35 309-343 255-297 (365)
187 2mad_H Methylamine dehydrogena 81.7 9.1 0.00031 37.8 11.0 86 311-415 270-367 (373)
188 2ece_A 462AA long hypothetical 81.2 5.8 0.0002 41.7 9.6 37 309-346 139-181 (462)
189 3nok_A Glutaminyl cyclase; bet 80.8 33 0.0011 33.3 14.3 114 309-449 97-218 (268)
190 2mad_H Methylamine dehydrogena 80.3 21 0.00071 35.1 13.0 78 314-409 27-116 (373)
191 1q7f_A NHL, brain tumor CG1071 80.1 21 0.00072 32.1 12.1 38 308-346 30-67 (286)
192 3nol_A Glutamine cyclotransfer 79.8 34 0.0012 33.1 14.0 119 302-445 36-158 (262)
193 1yr2_A Prolyl oligopeptidase; 79.6 17 0.00059 38.6 13.0 36 309-344 164-204 (741)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 79.2 25 0.00086 31.7 12.4 38 309-347 118-170 (314)
195 3qqz_A Putative uncharacterize 78.2 3.1 0.00011 39.9 6.0 49 303-352 22-73 (255)
196 2bkl_A Prolyl endopeptidase; m 77.4 16 0.00056 38.4 11.8 114 317-449 280-404 (695)
197 3mbr_X Glutamine cyclotransfer 77.3 44 0.0015 31.8 13.8 114 309-449 66-187 (243)
198 1k32_A Tricorn protease; prote 77.0 16 0.00053 40.7 12.0 120 309-450 339-469 (1045)
199 1fwx_A Nitrous oxide reductase 77.0 20 0.00069 38.7 12.5 127 308-449 277-438 (595)
200 2qc5_A Streptogramin B lactona 76.5 41 0.0014 29.8 15.7 40 303-343 15-54 (300)
201 2xdw_A Prolyl endopeptidase; a 76.1 31 0.0011 36.2 13.7 118 314-450 292-424 (710)
202 3nol_A Glutamine cyclotransfer 74.9 30 0.001 33.5 12.0 113 310-449 89-209 (262)
203 2oiz_A Aromatic amine dehydrog 74.7 3.7 0.00013 39.9 5.6 36 310-346 307-344 (361)
204 1z68_A Fibroblast activation p 74.7 3.5 0.00012 43.1 5.8 32 310-341 62-102 (719)
205 3c75_H MADH, methylamine dehyd 74.1 21 0.00073 36.5 11.3 87 303-409 70-168 (426)
206 1yr2_A Prolyl oligopeptidase; 73.9 16 0.00054 38.9 10.7 114 315-448 323-447 (741)
207 1mda_H Methylamine dehydrogena 73.9 6.3 0.00022 39.5 7.2 79 313-411 269-358 (368)
208 3o4h_A Acylamino-acid-releasin 73.1 20 0.00068 36.4 10.8 28 308-336 65-97 (582)
209 1xip_A Nucleoporin NUP159; bet 71.0 17 0.00057 36.9 9.6 84 33-126 41-133 (388)
210 3nok_A Glutaminyl cyclase; bet 70.0 37 0.0013 33.0 11.4 119 301-445 47-167 (268)
211 2dg1_A DRP35, lactonase; beta 68.5 71 0.0024 29.2 14.4 39 308-346 135-179 (333)
212 3c75_H MADH, methylamine dehyd 67.9 11 0.00037 38.7 7.5 87 312-416 323-420 (426)
213 2gop_A Trilobed protease; beta 66.7 24 0.00083 32.5 9.1 33 314-348 221-261 (347)
214 3iuj_A Prolyl endopeptidase; h 66.3 80 0.0027 33.3 14.1 115 315-450 287-413 (693)
215 1q7f_A NHL, brain tumor CG1071 64.7 39 0.0013 30.3 9.9 38 309-347 208-246 (286)
216 3mbr_X Glutamine cyclotransfer 64.3 99 0.0034 29.3 15.2 110 308-445 21-136 (243)
217 4a5s_A Dipeptidyl peptidase 4 64.2 26 0.00089 37.1 9.9 39 310-350 19-57 (740)
218 3pbp_A Nucleoporin NUP82; beta 63.5 6.1 0.00021 41.4 4.6 77 33-109 69-158 (452)
219 2z2n_A Virginiamycin B lyase; 62.4 82 0.0028 27.7 15.6 36 308-344 141-176 (299)
220 1yiq_A Quinohemoprotein alcoho 61.2 17 0.00058 39.0 7.8 63 329-411 455-517 (689)
221 2hz6_A Endoplasmic reticulum t 60.9 6.2 0.00021 38.6 3.9 69 318-407 8-76 (369)
222 1kb0_A Quinohemoprotein alcoho 60.0 19 0.00065 38.6 7.9 63 329-411 457-519 (677)
223 3g4e_A Regucalcin; six bladed 59.4 75 0.0026 29.2 11.0 32 310-341 151-185 (297)
224 2qe8_A Uncharacterized protein 58.2 68 0.0023 30.3 10.7 39 307-346 66-110 (343)
225 4a5s_A Dipeptidyl peptidase 4 57.1 15 0.00052 39.0 6.5 35 311-345 65-108 (740)
226 3sre_A PON1, serum paraoxonase 57.0 86 0.0029 31.2 11.6 35 303-337 45-91 (355)
227 1mda_H Methylamine dehydrogena 54.7 18 0.00061 36.2 6.2 41 309-349 315-357 (368)
228 3dr2_A Exported gluconolactona 54.4 54 0.0018 30.2 9.1 37 308-345 86-122 (305)
229 1npe_A Nidogen, entactin; glyc 53.0 1.2E+02 0.004 27.2 11.0 82 308-410 167-249 (267)
230 3hrp_A Uncharacterized protein 52.9 87 0.003 30.9 10.9 33 313-345 176-210 (409)
231 3q7m_A Lipoprotein YFGL, BAMB; 50.5 1.6E+02 0.0056 27.5 13.0 99 319-450 277-376 (376)
232 2ghs_A AGR_C_1268P; regucalcin 50.0 1.3E+02 0.0044 28.2 11.1 30 310-339 181-213 (326)
233 3hrp_A Uncharacterized protein 49.1 2E+02 0.0069 28.2 13.5 41 309-349 132-172 (409)
234 3g4e_A Regucalcin; six bladed 48.7 21 0.00073 33.0 5.3 41 308-348 199-239 (297)
235 3dr2_A Exported gluconolactona 45.5 1.8E+02 0.0062 26.6 13.8 43 301-345 38-81 (305)
236 1rwi_B Serine/threonine-protei 44.1 64 0.0022 28.3 7.6 36 308-343 192-227 (270)
237 2ad6_A Methanol dehydrogenase 43.9 68 0.0023 33.5 8.9 63 327-410 442-505 (571)
238 3al9_A Plexin-A2; beta-propell 40.8 86 0.0029 33.1 9.0 71 77-156 400-478 (539)
239 2xe4_A Oligopeptidase B; hydro 38.6 1.2E+02 0.0042 32.5 10.0 122 310-450 176-316 (751)
240 2qc5_A Streptogramin B lactona 38.2 2E+02 0.007 25.1 15.7 34 308-342 62-95 (300)
241 1kv9_A Type II quinohemoprotei 36.8 1E+02 0.0035 32.7 9.0 64 328-411 437-500 (668)
242 2qe8_A Uncharacterized protein 32.9 44 0.0015 31.6 4.9 38 310-347 122-163 (343)
243 2xzh_A Clathrin heavy chain 1; 30.8 43 0.0015 34.1 4.5 67 91-166 272-342 (365)
244 1rwi_B Serine/threonine-protei 30.2 2.3E+02 0.0078 24.6 8.9 34 310-343 152-185 (270)
245 1flg_A Protein (quinoprotein e 30.0 1.3E+02 0.0043 31.6 8.2 65 327-411 464-528 (582)
246 1pjx_A Dfpase, DIISOPROPYLFLUO 29.7 67 0.0023 28.8 5.3 38 308-345 226-263 (314)
247 1yiq_A Quinohemoprotein alcoho 29.6 3.8E+02 0.013 28.4 12.0 29 382-410 321-349 (689)
248 3a9g_A Putative uncharacterize 29.1 2.4E+02 0.0083 27.2 9.6 36 303-340 24-59 (354)
249 2ghs_A AGR_C_1268P; regucalcin 29.0 3.5E+02 0.012 25.1 15.4 35 309-345 135-175 (326)
250 3zwu_A Alkaline phosphatase PH 28.2 1.7E+02 0.0057 31.5 8.8 49 310-358 478-538 (592)
251 3q7x_A De novo designed beta-t 26.0 3.1E+02 0.011 23.4 8.8 89 304-415 10-112 (132)
252 1kb0_A Quinohemoprotein alcoho 25.6 3.9E+02 0.013 28.3 11.1 29 381-409 328-356 (677)
253 2p4o_A Hypothetical protein; p 24.8 4E+02 0.014 24.3 15.5 42 302-345 27-68 (306)
254 1kv9_A Type II quinohemoprotei 24.7 4.7E+02 0.016 27.5 11.6 29 382-410 316-344 (668)
255 3pbp_A Nucleoporin NUP82; beta 24.7 4.1E+02 0.014 27.7 10.7 133 311-453 69-213 (452)
256 1bpo_A Protein (clathrin); cla 23.2 69 0.0024 33.9 4.5 68 91-167 271-342 (494)
257 1xip_A Nucleoporin NUP159; bet 22.6 4E+02 0.014 26.6 10.0 70 310-403 90-159 (388)
258 2fp8_A Strictosidine synthase; 21.6 4.7E+02 0.016 23.9 11.2 30 310-339 187-217 (322)
259 3ei3_A DNA damage-binding prot 21.4 68 0.0023 37.0 4.4 35 74-108 826-872 (1158)
260 3q7m_A Lipoprotein YFGL, BAMB; 21.2 5E+02 0.017 24.1 14.1 25 318-342 52-76 (376)
261 3oky_A Plexin-A2; transmembran 20.5 2.2E+02 0.0076 31.1 8.0 71 78-157 400-478 (681)
262 3ei3_A DNA damage-binding prot 20.4 2.3E+02 0.0078 32.7 8.5 78 34-118 516-601 (1158)
No 1
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.53 E-value=0.00016 Score=67.54 Aligned_cols=85 Identities=11% Similarity=0.183 Sum_probs=64.4
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
.....++.+|++++++++...|.|.++|+.++..++.++|+.+............+ . .+++-+.
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~l~sg~ 256 (312)
T 4ery_A 193 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG--------------G--KWIVSGS 256 (312)
T ss_dssp CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS--------------S--CEEEECC
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC--------------C--cEEEEEC
Confidence 34667899999999999999999999999999999999998874322111111110 1 1456788
Q ss_pred CCCeEEEeecCCCCeEEEEEe
Q 012917 388 RKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v 408 (453)
.+|.|.||+++++..+..+.-
T Consensus 257 ~dg~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 257 EDNLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECC
T ss_pred CCCEEEEEECCCchhhhhhhc
Confidence 899999999999988877653
No 2
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.51 E-value=9.5e-05 Score=67.69 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=62.3
Q ss_pred eeeeccCcceeeeeecce-EEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-C--
Q 012917 34 NLLCALDMHTIALANRYQ-TVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-G-- 109 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~-~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G-- 109 (453)
.++.+|+++.||.+.... +.+-...... ........+.. ....|+++.|.|-.|-..++.|..+|.|++|+.. |
T Consensus 16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCC-Ccceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 366789999999887664 3332322211 11223223322 3467999999886556789999999999999955 4
Q ss_pred -------cEeeecccCccceeEEEEee
Q 012917 110 -------DLVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 110 -------~LL~sQ~lh~~pV~~ik~r~ 129 (453)
.++..-.-|..+|..+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~ 120 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAP 120 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECC
T ss_pred cccccCcceeeeecccCCceeEEEEcC
Confidence 44555567888999888643
No 3
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.49 E-value=0.00013 Score=69.47 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=66.8
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|++++++++...|.|.++|+.++..++.++++... +....-.+ +. +
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~-------------~~---~ 302 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS----IVSASWVG-------------DD---K 302 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC----EEEEEEET-------------TT---E
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc----EEEEEECC-------------CC---E
Confidence 3344566889999999999999999999999999999999999887652 22111110 12 4
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
++.+..+|.|.||+++++..+..+..+.
T Consensus 303 l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 303 VISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 4566779999999999999888887543
No 4
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=98.44 E-value=5.3e-05 Score=76.56 Aligned_cols=248 Identities=15% Similarity=0.196 Sum_probs=147.1
Q ss_pred CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCc-EEEEEEEEeCCcEEEEEeccccEEEEEec-CC-
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEY-ITAIEWLVFEEMRALAVGTSRGYFLVYDL-KG- 109 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~-ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G- 109 (453)
..++.||++++||++.+..+.+-...... ........+.. ..+. |+++.+-|..|-..+++|..+|.|++|+. +|
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~-~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSC-CSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCC-CccccceEEec-CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence 45788999999999998876664433220 01111222222 2466 99999887657778999999999999996 44
Q ss_pred -------cEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-----eEEEEeChhHHHHHHHHHHhccccccCC
Q 012917 110 -------DLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-----VLARFDGSEIQKMLQRWFQDSNSNFWDQ 177 (453)
Q Consensus 110 -------~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-----~i~~idG~~L~~~L~~c~~~~~~~~w~~ 177 (453)
.++..-.-|..+|..+.+... .+.|.+...+ .|.. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------~~~l~~~~~~~~~~~~v~~---------------------~d~ 149 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFE---------GRRLCVVGEGRDNFGVFIS---------------------WDS 149 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTT---------SSEEEEEECCSSCSEEEEE---------------------TTT
T ss_pred ccccccccccchhhcccccEEEEEEeCC---------CCEEEEeccCCCCccEEEE---------------------EEC
Confidence 555555568888888875421 2223333221 1111 110
Q ss_pred CCccCCCccccCccCCccceeccc-CCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhh
Q 012917 178 KPKQRDSEDLENSYERLPHQLWNV-SKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVG 256 (453)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~ykKW~l-~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~ 256 (453)
. . ....+ ...+.+...++.- .+.+.+++.+.+-.+-+|......
T Consensus 150 -------~---~-------~~~~~~~~~~~v~~~~~~~------------~~~~~l~~~~~d~~v~vwd~~~~~------ 194 (615)
T 1pgu_A 150 -------G---N-------SLGEVSGHSQRINACHLKQ------------SRPMRSMTVGDDGSVVFYQGPPFK------ 194 (615)
T ss_dssp -------C---C-------EEEECCSCSSCEEEEEECS------------SSSCEEEEEETTTEEEEEETTTBE------
T ss_pred -------C---C-------cceeeecCCccEEEEEECC------------CCCcEEEEEeCCCcEEEEeCCCcc------
Confidence 0 0 00000 0112333333321 111235555555555444321110
Q ss_pred hhhhhhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCC---eeeEEEECCC-CCEEEEEcCCCcEE
Q 012917 257 AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPR---KGERLTLSPS-GSLAAITDSLGRIL 332 (453)
Q Consensus 257 a~~S~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R---~~~~i~lsP~-~~laa~tDslGRV~ 332 (453)
++..+..... .+.+++.+|+ ++++++....|.|.
T Consensus 195 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 195 ------------------------------------------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp ------------------------------------------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred ------------------------------------------eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 0111222233 6889999999 99999999999999
Q ss_pred EEEcCCceEEEEe-c---ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 333 LLDTQALVVVRLW-K---GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 333 LiD~~~~~ivRmW-K---GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
++|+.++..++.+ + ++.+. +.-+... + . . +++-+-.+|.|.||+++++..+..+..
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~-v~~~~~~---~----------~----~--~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGG-IFALSWL---D----------S----Q--KFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSC-EEEEEES---S----------S----S--EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEeEEecccccccCCc-eEEEEEc---C----------C----C--EEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9999999999998 5 66552 2122211 1 0 1 345566789999999999999999887
Q ss_pred c
Q 012917 409 A 409 (453)
Q Consensus 409 ~ 409 (453)
+
T Consensus 293 ~ 293 (615)
T 1pgu_A 293 D 293 (615)
T ss_dssp C
T ss_pred C
Confidence 6
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=98.30 E-value=0.0015 Score=61.61 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=64.8
Q ss_pred CeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 308 RKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 308 R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
+....+..+| ++++++++...|.|.++|+.++..++.++|+.+. +....-.+ +.. +++-
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~----v~~~~~~p-------------~~~--~l~s 245 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN----VSFAVFHP-------------TLP--IIIS 245 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECS-------------SSS--EEEE
T ss_pred CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC----EEEEEECC-------------CCC--EEEE
Confidence 4455666665 7889999999999999999999999999999873 32221111 011 5577
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+..+|.|.||+++++..+..++.+.+
T Consensus 246 ~s~Dg~i~iWd~~~~~~~~~~~~~~~ 271 (304)
T 2ynn_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLE 271 (304)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSS
T ss_pred EcCCCeEEEEECCCCceeeeccCCCc
Confidence 88999999999999999988876543
No 6
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=98.24 E-value=0.00085 Score=65.83 Aligned_cols=119 Identities=15% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc------------eEEEEecccccceeeEEEEEecccccccccccCC
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL------------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP 373 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~------------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~ 373 (453)
....+.+++.+|+|+++++....|+|.|+|+.+. .....+.|+.+ ++....-..
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~---------- 320 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQ---------- 320 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS----CEEEEEECG----------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC----cEEEEEECC----------
Confidence 3456788999999999999999999999999864 44556677766 343222111
Q ss_pred CCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcC-cEEEEEeCCCCceEEEe
Q 012917 374 VKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVP-LEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 374 ~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~-~~~~lld~~~g~l~~i~ 449 (453)
+. -+++-+..+|.|.||++++|..+..+..+.+... .. .......++| .+.++--..||.++.-+
T Consensus 321 ---~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~-~v-----~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 321 ---ND--EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI-SV-----AVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ---GG--CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EE-----EECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred ---CC--CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE-EE-----EecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 01 1345677899999999999999988876554221 00 0000112444 34444555688888654
No 7
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.23 E-value=0.0013 Score=61.75 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=139.2
Q ss_pred CeeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCc
Q 012917 33 PNLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGD 110 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~ 110 (453)
..++.+|++++||++... .+.+-.. .. ...+....+.. ....|+++.|-| +-..++.|..+|.|++|+ +++.
T Consensus 12 ~~~~~s~~~~~l~~~~~d~~v~i~~~--~~-~~~~~~~~~~~-h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICPNNHEVHIYEK--SG-NKWVQVHELKE-HNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEE--ET-TEEEEEEEEEC-CSSCEEEEEEET--TTTEEEEEETTSCEEEEEEETTE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC--CC-CcEEeeeeecC-CCCcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCe
Confidence 357789999999998444 4444222 21 11112222322 346799998876 556788899999999999 4565
Q ss_pred Eeeec--ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccc
Q 012917 111 LVHRQ--LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDL 187 (453)
Q Consensus 111 LL~sQ--~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~ 187 (453)
+.... .-|..+|..+.+... .+.|.+...+. +...|-. .+ . .
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~v~i~d~~--------------~~-------~----~- 130 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPN---------EKKFAVGSGSRVISICYFE--------------QE-------N----D- 130 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTT---------SSEEEEEETTSSEEEEEEE--------------TT-------T----T-
T ss_pred eeeeEEeecCCCceeEEEECCC---------CCEEEEEeCCCEEEEEEec--------------CC-------C----c-
Confidence 44433 337788888875321 22344333332 2211100 00 0 0
Q ss_pred cCccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHH
Q 012917 188 ENSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF 267 (453)
Q Consensus 188 ~~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~ 267 (453)
. ...+.........+.+.++.- .+ ..+++.+.+-.+-+|......... .
T Consensus 131 ---~--~~~~~~~~~~~~~i~~~~~~~------------~~-~~l~~~~~dg~i~~~d~~~~~~~~-----------~-- 179 (372)
T 1k8k_C 131 ---W--WVCKHIKKPIRSTVLSLDWHP------------NS-VLLAAGSCDFKCRIFSAYIKEVEE-----------R-- 179 (372)
T ss_dssp ---E--EEEEEECTTCCSCEEEEEECT------------TS-SEEEEEETTSCEEEEECCCTTTSC-----------C--
T ss_pred ---c--eeeeeeecccCCCeeEEEEcC------------CC-CEEEEEcCCCCEEEEEcccccccc-----------c--
Confidence 0 000000001122344444321 01 124555556666666543211100 0
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917 268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 268 S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG 347 (453)
.. ...|+... + ...++..+......+.+++.+|++++++++...|+|.++|+.++..++.+++
T Consensus 180 ----~~-~~~~~~~~--------~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 180 ----PA-PTPWGSKM--------P----FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp ----CC-CBTTBSCC--------C----TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred ----cc-cccccccc--------c----hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 00 01221110 0 0112334556677899999999999999999999999999999999999998
Q ss_pred cccc--eeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917 348 YRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 348 yRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~ 399 (453)
.... .+.|.. +.. +|+ -+ .+|.|.||++++
T Consensus 243 ~~~~v~~~~~~~-------------------~~~-~l~-~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ETLPLLAVTFIT-------------------ESS-LVA-AG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSCCEEEEEEEE-------------------TTE-EEE-EE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEec-------------------CCC-EEE-EE-eCCeEEEEEccC
Confidence 8652 122221 111 333 33 899999999988
No 8
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=98.21 E-value=0.00075 Score=62.98 Aligned_cols=271 Identities=10% Similarity=0.039 Sum_probs=143.2
Q ss_pred eeeccC----cceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-C
Q 012917 35 LLCALD----MHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-K 108 (453)
Q Consensus 35 ~~~sp~----~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~ 108 (453)
++.+|+ +.+||.+.....+. -|+-..... -.+.+ ....|+++.|-|- +-..++.|..+|.|++|+. +
T Consensus 75 ~~~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~-----~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 75 CAWTYDSNTSHPLLAVAGSRGIIR-IINPITMQCIKHYVG-----HGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp EEEEECTTTCCEEEEEEETTCEEE-EECTTTCCEEEEEES-----CCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTT
T ss_pred EEeccCCCCCCCEEEEecCCCEEE-EEEchhceEeeeecC-----CCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeec
Confidence 445666 55667666554222 244332111 12222 2466999988764 5568899999999999994 5
Q ss_pred CcEeeec---ccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-eEEEEeChh--HHHHHHHHHHhccccccCCCCccC
Q 012917 109 GDLVHRQ---LIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-VLARFDGSE--IQKMLQRWFQDSNSNFWDQKPKQR 182 (453)
Q Consensus 109 G~LL~sQ---~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-~i~~idG~~--L~~~L~~c~~~~~~~~w~~~~~~~ 182 (453)
|..+..- .-|..+|..+.+... .+.|.....+ .|...|-.. ....++.. ..-. .
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~--------~ 207 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLL---------GEKIMSCGMDHSLKLWRINSKRMMNAIKES---YDYN--------P 207 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTT---------SSEEEEEETTSCEEEEESCSHHHHHHHHHH---HTCC--------G
T ss_pred CeEEEEecccccccCceeEEEECCC---------CCEEEEecCCCCEEEEECCCCcccccccee---EEec--------C
Confidence 7666554 468999999986331 2335444444 455555433 33333321 1100 0
Q ss_pred CCccccCccCCccceecccC--CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhh
Q 012917 183 DSEDLENSYERLPHQLWNVS--KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILS 260 (453)
Q Consensus 183 ~~~~~~~~~~~L~ykKW~l~--~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S 260 (453)
+...............+... ....+...++.| ..+++.+.+-.+-+|........ +
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------~~l~~~~~d~~i~~wd~~~~~~~------~- 265 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---------------DLILSKSCENAIVCWKPGKMEDD------I- 265 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---------------TEEEEECSSSEEEEEEESSTTCC------G-
T ss_pred CCCcccccceeeccCccccccCCcceEEEEEEcC---------------CEEEEEecCCEEEEEeCCCcccc------c-
Confidence 00000000001111111111 222344444431 12566677777777765543221 0
Q ss_pred hhhhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCC--CCEEEEEcCCCcEEEEEcCC
Q 012917 261 KVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPS--GSLAAITDSLGRILLLDTQA 338 (453)
Q Consensus 261 ~va~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~--~~laa~tDslGRV~LiD~~~ 338 (453)
..+ ...+.. ...+..+......+..++.+|+ ++++|+.+..|.|.++|+.+
T Consensus 266 ----------~~~-----------~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 266 ----------DKI-----------KPSESN------VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp ----------GGC-----------CTTCCC------EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred ----------ccc-----------ccCCcc------hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 000 000000 1122234445556777788888 99999999999999999999
Q ss_pred ce----EEEEecccc-cceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCC
Q 012917 339 LV----VVRLWKGYR-DASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 339 ~~----ivRmWKGyR-dAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~ 399 (453)
+. .++.+++++ ...+.-+.... + .. +++-+-.+|.|.||++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~--~--------------~~--~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSR--D--------------SS--ILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECT--T--------------SS--EEEEEETTSEEEEEEC--
T ss_pred CCCccccceEEcccccCCceEEEEeCC--C--------------CC--eEEEEeCCCEEEEEEecC
Confidence 75 555888875 23332222211 1 11 345677899999999864
No 9
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=98.21 E-value=0.00028 Score=67.82 Aligned_cols=288 Identities=14% Similarity=0.128 Sum_probs=154.2
Q ss_pred eeeeccCc-ceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEe
Q 012917 34 NLLCALDM-HTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLV 112 (453)
Q Consensus 34 ~~~~sp~~-~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL 112 (453)
.++.+|++ ++||.+.....|. -|+-........ -.+. +....|+++.|-|. +-..++.|..+|.|++|+..+..+
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~-~~~~-~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGSKGGDII-LWDYDVQNKTSF-IQGM-GPGDAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp EEEECSSCTTEEEEEEBTSCEE-EEETTSTTCEEE-ECCC-STTCBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEE
T ss_pred EEEECCCCCCEEEEEcCCCeEE-EEeCCCccccee-eecC-CcCCceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCce
Confidence 36778998 8888877653222 143332111111 1111 13467999988764 457889999999999999887766
Q ss_pred eecccCc---cceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 012917 113 HRQLIHP---GRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE 188 (453)
Q Consensus 113 ~sQ~lh~---~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~ 188 (453)
....-|. .+|..+.+... ...|.....+. |...|- + + +
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i~d~-~--------------~-------~------- 195 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVS---------RQMLATGDSTGRLLLLGL-D--------------G-------H------- 195 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETT---------TTEEEEEETTSEEEEEET-T--------------S-------C-------
T ss_pred EEEeccCCCCCCeEEEEECCC---------CCEEEEECCCCCEEEEEC-C--------------C-------C-------
Confidence 5554443 66777765321 22333333322 222221 0 0 0
Q ss_pred CccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHH
Q 012917 189 NSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATF 267 (453)
Q Consensus 189 ~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~ 267 (453)
....+. ....+.+.++.- .+.+.+++++.+-.|-+|........
T Consensus 196 --------~~~~~~~h~~~v~~~~~~~------------~~~~~l~s~~~d~~i~iwd~~~~~~~--------------- 240 (383)
T 3ei3_B 196 --------EIFKEKLHKAKVTHAEFNP------------RCDWLMATSSVDATVKLWDLRNIKDK--------------- 240 (383)
T ss_dssp --------EEEEEECSSSCEEEEEECS------------SCTTEEEEEETTSEEEEEEGGGCCST---------------
T ss_pred --------EEEEeccCCCcEEEEEECC------------CCCCEEEEEeCCCEEEEEeCCCCCcc---------------
Confidence 000010 112344444321 11112455555555555543321110
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 268 STISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 268 S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
..++..+ .....+.+++.+| ++++++++...|+|.|+|+.++..++..+
T Consensus 241 -----------------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 241 -----------------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp -----------------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred -----------------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 0011112 3456788999999 99999999999999999999999888888
Q ss_pred ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc-------CCCCeEEEeecCCCCeEEEEEecCCeEEecccc
Q 012917 347 GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA-------PRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTY 419 (453)
Q Consensus 347 GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya-------prRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~ 419 (453)
++......+..... ..-.| +..+..+-+. ..+|.|.||++++|..+..+..+..
T Consensus 291 ~~~~~~~~~~~~~~--------~~~~p---~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~-------- 351 (383)
T 3ei3_B 291 IHPHRQFQHLTPIK--------ATWHP---MYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNA-------- 351 (383)
T ss_dssp ECCBCCCTTSCCCC--------CEECS---SSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTB--------
T ss_pred cccccccccccceE--------EeccC---CCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCC--------
Confidence 77643221110000 00000 1122233333 3789999999999999888763221
Q ss_pred ccCccCCCCCCcCcEEEEEeCCCCceEEEe
Q 012917 420 RFGSSMASSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 420 ~~~g~~~~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
.+....-.|+|..-+|+-++||.|+..+
T Consensus 352 --~~~~~~~~~s~~g~~l~s~sd~~i~iw~ 379 (383)
T 3ei3_B 352 --AGIISLNKFSPTGDVLASGMGFNILIWN 379 (383)
T ss_dssp --CSCCCEEEECTTSSEEEEEETTEEEEEE
T ss_pred --CceEEEEEEecCccEEEEecCCcEEEEe
Confidence 1111010244444445555577777655
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.16 E-value=0.0015 Score=65.90 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=62.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|+++++|++...|.|.|+|. ++..++.++|+.+. |....-.+ +.. +
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~----v~~l~~s~-------------dg~--~ 522 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS----VRGVAFSP-------------DGQ--T 522 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC----EEEEEECT-------------TSS--C
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC----EEEEEEcC-------------CCC--E
Confidence 3444566788999999999999999999999995 78889999998763 22111111 111 2
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
++-+-.+|.|.||+. +|+++..+..+
T Consensus 523 l~s~~~dg~v~lwd~-~~~~~~~~~~h 548 (577)
T 2ymu_A 523 IASASDDKTVKLWNR-NGQLLQTLTGH 548 (577)
T ss_dssp EEEEETTSEEEEECT-TSCEEEEEECC
T ss_pred EEEEECcCEEEEEeC-CCCEEEEEcCC
Confidence 345778999999995 78888877643
No 11
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.15 E-value=0.0053 Score=60.45 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=67.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+++.+|+++++++....|.|.++|+.++..++.++|+.+. +....-.+ . .
T Consensus 306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~--------------~---~ 364 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL----VGLLRLSD--------------K---F 364 (464)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECS--------------S---E
T ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc----EEEEEEcC--------------C---E
Confidence 4455567889999999999999999999999999999999999998773 32221111 1 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
++-+-.+|.|.||+++++.+...++..
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred EEEEeCCCcEEEEECCCCceeeeecCC
Confidence 456677999999999999888777644
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=98.14 E-value=0.0007 Score=70.85 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=67.8
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-------ccccceeeEEEEEecccccccccccCCC
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-------GYRDASCVFMEMLVNKDAATSSAYYAPV 374 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-------GyRdAqc~Wi~~~~~~~~~~~~~~~~~~ 374 (453)
.|..+...+.+++.+|+|+++|++...|.|.|+|+.++..++.++ |+.+ ++....=.+
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~----~V~~v~~sp----------- 249 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG----SVFGLTWSP----------- 249 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS----CEEEEEECT-----------
T ss_pred eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC----CEEEEEECC-----------
Confidence 355666778999999999999999999999999999999999884 5655 332221111
Q ss_pred CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+.. +++-+..+|.|.||++++|..+..+..+
T Consensus 250 --dg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 250 --DGT--KIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp --TSS--EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred --CCC--EEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 111 3456778999999999999988887654
No 13
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=98.13 E-value=0.0009 Score=64.98 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccce-----------------eeEEEEEeccccccc
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDAS-----------------CVFMEMLVNKDAATS 367 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAq-----------------c~Wi~~~~~~~~~~~ 367 (453)
....+.+++.+|+|+++++.+. |.|.++|+.+ +..++.++|+.... +.|-.
T Consensus 284 ~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~---------- 352 (447)
T 3dw8_B 284 IISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG---------- 352 (447)
T ss_dssp HTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT----------
T ss_pred cCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC----------
Confidence 3347889999999999998877 9999999998 99999998885311 23320
Q ss_pred ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+.. +| +-+-.+|.|.||++++|..+ .+...
T Consensus 353 ---------~~~-~l-~s~s~dg~v~iwd~~~~~~~-~~~~~ 382 (447)
T 3dw8_B 353 ---------SDS-VV-MTGSYNNFFRMFDRNTKRDI-TLEAS 382 (447)
T ss_dssp ---------TSS-EE-EEECSTTEEEEEETTTCCEE-EEECC
T ss_pred ---------CCC-EE-EEeccCCEEEEEEcCCCcce-eeeec
Confidence 111 33 67788999999999998776 44444
No 14
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.0055 Score=56.95 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEe
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLV 112 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL 112 (453)
.++.+|++.+||.+.....|. -|+-.....+ ..+.. ....|+++.|-| +-..++.|..+|.|++|+ ++|..+
T Consensus 37 ~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~---~~~~~-h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 37 QVKYNKEGDLLFSCSKDSSAS-VWYSLNGERL---GTLDG-HTGTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp EEEECTTSCEEEEEESSSCEE-EEETTTCCEE---EEECC-CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEE
T ss_pred EEEEcCCCCEEEEEeCCCEEE-EEeCCCchhh---hhhhh-cCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 467799999999887654222 2433321111 12222 346799998865 566788999999999999 556665
Q ss_pred eecccCccceeEEEEe
Q 012917 113 HRQLIHPGRILKLRVR 128 (453)
Q Consensus 113 ~sQ~lh~~pV~~ik~r 128 (453)
..-. |..+|..+.+.
T Consensus 110 ~~~~-~~~~v~~~~~~ 124 (369)
T 3zwl_B 110 ATWK-SPVPVKRVEFS 124 (369)
T ss_dssp EEEE-CSSCEEEEEEC
T ss_pred EEee-cCCCeEEEEEc
Confidence 5544 88888888753
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.0028 Score=58.96 Aligned_cols=83 Identities=13% Similarity=0.011 Sum_probs=63.6
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
.....++.+|+++++++++..|.|.++|+.+ +..++.++++.+. +....-.+ +.. +++.+
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~--~l~~~ 236 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSP-------------DLT--YFITS 236 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC----EEEEEECT-------------TSS--EEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc----eeEEEECC-------------CCC--EEEEe
Confidence 3788999999999999999999999999999 8999999887652 22111111 111 33566
Q ss_pred CCCCeEEEeecCCCCeEEEEEec
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~ 409 (453)
-.+|.|.||+++++..+..+...
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~~~ 259 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYETD 259 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEECS
T ss_pred cCCceEEEEECCCCceeeeecCC
Confidence 78999999999999988887733
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=98.08 E-value=0.0015 Score=62.55 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=65.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+++.+|+++++++....|.|.|+|+.++..++.++|+.+ .+....-.+ +.. +
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p-------------~~~--~ 240 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES----DINAICFFP-------------NGN--A 240 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS----CEEEEEECT-------------TSS--E
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC----CEEEEEEcC-------------CCC--E
Confidence 444556688999999999999999999999999999999999999887 233221111 111 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
++-+..+|.|.||+++++..+..+.
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~ 265 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc
Confidence 4567789999999999988776654
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=98.08 E-value=0.0036 Score=58.38 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=64.8
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
.....+..++.+|++++++++...|.|.++|+.++..++.+..-....+..+....+ .. +++
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~l~ 208 (312)
T 4ery_A 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN----------------GK--YIL 208 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT----------------SS--EEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC----------------CC--EEE
Confidence 344557889999999999999999999999999999888775544444433332111 11 335
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+..+|.|.||+++++..+..+..++
T Consensus 209 ~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 209 AATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCCeEEEEECCCCcEEEEEEecC
Confidence 57789999999999998887776443
No 18
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.05 E-value=0.0019 Score=58.93 Aligned_cols=239 Identities=8% Similarity=0.063 Sum_probs=134.1
Q ss_pred eeeeccCcceeeeeecceEEE-Ee-ecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcE
Q 012917 34 NLLCALDMHTIALANRYQTVI-IN-WADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDL 111 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~-~~-w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~L 111 (453)
.++.+|+++.|+.+.....+. -. |..... . ....+.. ....|+++.+ +-..+++|..+|.|++|+ .+..
T Consensus 64 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~--~~~~~~~-~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-~~~~ 134 (313)
T 3odt_A 64 SVCYDSEKELLLFGGKDTMINGVPLFATSGE-D--PLYTLIG-HQGNVCSLSF----QDGVVISGSWDKTAKVWK-EGSL 134 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTCCTTS-C--C-CEECC-CSSCEEEEEE----ETTEEEEEETTSEEEEEE-TTEE
T ss_pred EEEECCCCCEEEEecCCCeEEEEEeeecCCC-C--cccchhh-cccCEEEEEe----cCCEEEEEeCCCCEEEEc-CCcE
Confidence 356678888888776664332 22 222211 1 1111212 3466888876 445889999999999999 8888
Q ss_pred eeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCC-eEEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCc
Q 012917 112 VHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPG-VLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENS 190 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~-~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~ 190 (453)
+.....|..+|..+.+-... .+.+.....+ .+...|- .. .
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~--------~~~l~~~~~d~~i~i~d~-------~~----~-------------------- 175 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFS--------ENKFLTASADKTIKLWQN-------DK----V-------------------- 175 (313)
T ss_dssp EEEEECCSSCEEEEEEEETT--------TTEEEEEETTSCEEEEET-------TE----E--------------------
T ss_pred EEecccCCCceeEEEEccCC--------CCEEEEEECCCCEEEEec-------Cc----e--------------------
Confidence 88888899999988865422 2234443333 3443330 00 0
Q ss_pred cCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHH
Q 012917 191 YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTI 270 (453)
Q Consensus 191 ~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~ 270 (453)
.+.+.......+...++.- .+. +++.+.+-.+-+|......
T Consensus 176 -----~~~~~~~~~~~i~~~~~~~------------~~~--~~~~~~dg~i~i~d~~~~~-------------------- 216 (313)
T 3odt_A 176 -----IKTFSGIHNDVVRHLAVVD------------DGH--FISCSNDGLIKLVDMHTGD-------------------- 216 (313)
T ss_dssp -----EEEECSSCSSCEEEEEEEE------------TTE--EEEEETTSEEEEEETTTCC--------------------
T ss_pred -----EEEEeccCcccEEEEEEcC------------CCe--EEEccCCCeEEEEECCchh--------------------
Confidence 0001111122333333320 111 4444444444444332110
Q ss_pred hhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 271 SSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 271 ~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
++..+......+..++.+|+++ ++++...|+|.++|+.++..++.+++..+
T Consensus 217 ----------------------------~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 267 (313)
T 3odt_A 217 ----------------------------VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAI 267 (313)
T ss_dssp ----------------------------EEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSS
T ss_pred ----------------------------hhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCc
Confidence 1112333445678999999996 55667789999999999999999988765
Q ss_pred ceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 351 ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 351 Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
. +....-.+ +.. ++ -+-.+|.|.||++++++.+.....
T Consensus 268 ~----i~~~~~~~-------------~~~-~~--~~~~dg~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 268 S----IWSVDCMS-------------NGD-II--VGSSDNLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp C----EEEEEECT-------------TSC-EE--EEETTSCEEEEESCGGGCCC----
T ss_pred e----EEEEEEcc-------------CCC-EE--EEeCCCcEEEEeCCCCceeehhhh
Confidence 2 21111111 111 33 377899999999998876655543
No 19
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.0038 Score=58.43 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=60.1
Q ss_pred eeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-CCc-
Q 012917 34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD- 110 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G~- 110 (453)
.++.+|+++.||.+... .+.+-..... .......+.. ....|+++.|.|-.+-..++.|..+|.|++|+. +|.
T Consensus 16 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 91 (379)
T 3jrp_A 16 DAVLDYYGKRLATCSSDKTIKIFEVEGE---THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91 (379)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETT---EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred EEEEcCCCCEEEEEECCCcEEEEecCCC---cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence 36678999999988655 3433222111 1111222322 246699998876544678899999999999994 465
Q ss_pred -EeeecccCccceeEEEEee
Q 012917 111 -LVHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 111 -LL~sQ~lh~~pV~~ik~r~ 129 (453)
.+....-|..+|..+.+..
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~ 111 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAP 111 (379)
T ss_dssp EEEEEECCCSSCEEEEEECC
T ss_pred eEeeeecCCCcceEEEEeCC
Confidence 5555566889999988643
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=98.01 E-value=0.0019 Score=65.27 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=64.3
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH 113 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~ 113 (453)
.++.||+|.+||.+-....|.. |+..++.--++.|- ...|+++.+- ||-..+|.|-.+|.|++|+.+|.++.
T Consensus 21 ~~a~spdg~~las~~~d~~v~i-Wd~~~~~~~~l~gh-----~~~V~~l~fs--pdg~~las~~~d~~i~vWd~~~~~~~ 92 (577)
T 2ymu_A 21 GVAFSPDGQTIASASDDKTVKL-WNRNGQLLQTLTGH-----SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQ 92 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEE-ECTTSCEEEEEECC-----SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEE-EECCCCEEEEEeCC-----CCCEEEEEEC--CCCCEEEEEeCCCEEEEEECCCCEEE
Confidence 4778999999999877654432 76443221233432 3568887665 46678888889999999999999998
Q ss_pred ecccCccceeEEEE
Q 012917 114 RQLIHPGRILKLRV 127 (453)
Q Consensus 114 sQ~lh~~pV~~ik~ 127 (453)
.-.-|..+|..+.+
T Consensus 93 ~~~~~~~~v~~~~~ 106 (577)
T 2ymu_A 93 TLTGHSSSVRGVAF 106 (577)
T ss_dssp EECCCSSCEEEEEE
T ss_pred EEECCCCCEEEEEE
Confidence 88889999998886
No 21
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.01 E-value=0.0032 Score=58.59 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=63.9
Q ss_pred CCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCc------eEEEEecccccce-----eeEEEEEecccccccccccCCC
Q 012917 307 PRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL------VVVRLWKGYRDAS-----CVFMEMLVNKDAATSSAYYAPV 374 (453)
Q Consensus 307 ~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~------~ivRmWKGyRdAq-----c~Wi~~~~~~~~~~~~~~~~~~ 374 (453)
+..+.+|+.+| ++++++++...|+|.++|.... ..++.++++++-. .+.+....-.+
T Consensus 193 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----------- 261 (342)
T 1yfq_A 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP----------- 261 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-----------
T ss_pred CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-----------
Confidence 34578899999 9999999999999999999887 8888999887621 12232211111
Q ss_pred CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+.. +++-+-.+|.|.||++++|.++..+..+
T Consensus 262 --~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 262 --RHK--FLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp --TTC--CEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --CCC--EEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 111 2345667999999999999988887754
No 22
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.98 E-value=0.0069 Score=63.93 Aligned_cols=246 Identities=14% Similarity=0.106 Sum_probs=139.6
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL 111 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L 111 (453)
.++.||++..||++..+-.|. =|+-..+.. -+..+ ....|+++.|-| |-..+++|..+|.|++|+ .+|..
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~-iwd~~~~~~~~~~~~-----~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVE-IWNYETQVEVRSIQV-----TETPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEE-EEETTTTEEEEEEEC-----CSSCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEECCCCCEEEEEeCCCEEE-EEECCCCceEEEEec-----CCCcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcE
Confidence 478899999999998764332 244332111 12221 245699988876 556788999999999999 67888
Q ss_pred eeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCCCccccCc
Q 012917 112 VHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENS 190 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~~~ 190 (453)
+..-.-|.++|..+.+... ..-|.....+. |...|-. .+ . .
T Consensus 90 ~~~~~~~~~~v~~~~~s~~---------~~~l~~~~~dg~i~vw~~~--------------~~------------~--~- 131 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPT---------KPYVLSGSDDLTVKLWNWE--------------NN------------W--A- 131 (814)
T ss_dssp EEEEECCSSCEEEEEECSS---------SSEEEEEETTSEEEEEEGG--------------GT------------S--E-
T ss_pred EEEEecCCCCEEEEEEeCC---------CCEEEEEcCCCEEEEEECC--------------CC------------c--e-
Confidence 8777779999998885322 22244433332 2222100 00 0 0
Q ss_pred cCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHHHH
Q 012917 191 YERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFSTI 270 (453)
Q Consensus 191 ~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S~~ 270 (453)
+ .+... .....+.++++.- .....+++++.+-.|-+|......
T Consensus 132 ---~-~~~~~-~~~~~v~~~~~~p------------~~~~~l~~~~~dg~v~vwd~~~~~-------------------- 174 (814)
T 3mkq_A 132 ---L-EQTFE-GHEHFVMCVAFNP------------KDPSTFASGCLDRTVKVWSLGQST-------------------- 174 (814)
T ss_dssp ---E-EEEEE-CCSSCEEEEEEET------------TEEEEEEEEETTSEEEEEETTCSS--------------------
T ss_pred ---E-EEEEc-CCCCcEEEEEEEc------------CCCCEEEEEeCCCeEEEEECCCCc--------------------
Confidence 0 00000 0011223322210 000113333333333333221110
Q ss_pred hhhhhccccCCCCCCCCCCCCCccccCCCCcccc-CCCCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917 271 SSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLK-DHPRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 271 ~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~-D~~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKG 347 (453)
+...+. ...+.+..++.+| +++++++....|+|.++|+.++..++.++|
T Consensus 175 ----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 226 (814)
T 3mkq_A 175 ----------------------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (814)
T ss_dssp ----------------------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred ----------------------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 001111 1225567788888 999999999999999999999999999998
Q ss_pred cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 348 YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 348 yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
+.+. +..+... + +.. +++-+..+|.|.||+++++..+..+..+
T Consensus 227 ~~~~-v~~~~~~---~-------------~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 227 HMSN-VSFAVFH---P-------------TLP--IIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp CSSC-EEEEEEC---S-------------SSS--EEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred CCCC-EEEEEEc---C-------------CCC--EEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 7652 2222211 1 111 3445667899999999998877776654
No 23
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.95 E-value=0.0031 Score=61.65 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=58.4
Q ss_pred ccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
|......+.+|+.+|+| +++|+....|.|.|+|+.++.+++ .+|+.+ +|....=.+. .. .
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~----~V~~v~~sp~------------~~--~ 313 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRD----FVRDATWSPL------------NH--S 313 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSS----CEEEEEECSS------------ST--T
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCC----CEEEEEEeCC------------CC--e
Confidence 44555678899999987 688888888999999999999887 489887 4433221110 11 2
Q ss_pred EEEEcCCCCeEEEeecCCCCe
Q 012917 382 LAIHAPRKGIIEVWQMRTGPR 402 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~R 402 (453)
|+.-+..+|.|.+|++++.+.
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 556678899999999988654
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.95 E-value=0.0057 Score=60.51 Aligned_cols=74 Identities=9% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917 318 SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~ 397 (453)
+|.++++....|.|.++|+.++..++.++|+.+ |+....-.+. .. +++-+..+|.|.||++
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~----~v~~v~~~~~-------------g~--~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN----WVRGVLFHSG-------------GK--FILSCADDKTLRVWDY 367 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECSS-------------SS--CEEEEETTTEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCC----cEEEEEEcCC-------------CC--EEEEEeCCCeEEEEEC
Confidence 578899988999999999999999999999887 5543322111 11 2346778999999999
Q ss_pred CCCCeEEEEEecC
Q 012917 398 RTGPRLLTIQCAK 410 (453)
Q Consensus 398 ~~G~RV~a~~v~~ 410 (453)
+++..+..+..+.
T Consensus 368 ~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 368 KNKRCMKTLNAHE 380 (410)
T ss_dssp TTSCCCEEEECCS
T ss_pred CCCceEEEEcCCC
Confidence 9999888776443
No 25
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.94 E-value=0.016 Score=55.73 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL 111 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L 111 (453)
+....+|+++.||.+.....+ .-|+-... .. ...+.. ....|+++.|-| +-..++.|..+|.|++|+ ++|..
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~-~~--~~~~~~-h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~ 173 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDI-KVLDSNFN-LQ--REIDQA-HVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSN 173 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCE-EEECTTSC-EE--EEETTS-SSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCC
T ss_pred EEEEEecCCCEEEEEECCCCE-EEEeCCCc-ce--eeeccc-ccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcC
Confidence 344668899998888665432 22443321 11 112222 346799988865 556889999999999999 56777
Q ss_pred eeecccCccceeEEEEe
Q 012917 112 VHRQLIHPGRILKLRVR 128 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~r 128 (453)
+..-.-|..+|..+.+.
T Consensus 174 ~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 174 PRTLIGHRATVTDIAII 190 (420)
T ss_dssp CEEEECCSSCEEEEEEE
T ss_pred ceEEcCCCCcEEEEEEc
Confidence 76666789999998864
No 26
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=97.92 E-value=0.0099 Score=57.59 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=63.3
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCc-EEEEEcCCceEEEEec-c-cccceeeEEEEEecccccccccccCCCCC
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGR-ILLLDTQALVVVRLWK-G-YRDASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGR-V~LiD~~~~~ivRmWK-G-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
+..+..+...+.+++.+|+|+++|++...|. |.|+|+.++..++.++ | +.+ .+.-+... +
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s---~------------- 250 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWS---T------------- 250 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEEC---T-------------
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEEC---C-------------
Confidence 4457777888999999999999999999998 9999999999999998 7 554 33222221 1
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCC
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~ 401 (453)
+.. +++-+..+|.|.||+++++.
T Consensus 251 ~~~--~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 251 DGS--KLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp TSC--EEEEEETTCEEEEEESSCCS
T ss_pred CCC--EEEEEECCCEEEEEEccCCC
Confidence 111 34556779999999998763
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0026 Score=60.90 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCeeeEEEECCCC-CEEEEEcCCC---cEEEEEcCCc-eEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 307 PRKGERLTLSPSG-SLAAITDSLG---RILLLDTQAL-VVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 307 ~R~~~~i~lsP~~-~laa~tDslG---RV~LiD~~~~-~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
...+.+++.+|++ ++++++...| .|.++|+.++ ..++.++ |+.. .+....-.+ . +..
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~----~v~~~~~s~----------~--~~~- 276 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK----GILSLDWCH----------Q--DEH- 276 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS----CEEEEEECS----------S--CSS-
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC----ceeEEEeCC----------C--CCC-
Confidence 4568899999987 6788877777 9999999997 7888888 7765 232221110 0 111
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++-+-.+|.|.||+++++..+..+..+.
T Consensus 277 -~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 277 -LLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp -CEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred -eEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 34556679999999999999998887543
No 28
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.89 E-value=0.0024 Score=62.16 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=54.2
Q ss_pred CCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 306 HPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 306 ~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
....+.+|+.+|++ +++|+....|.|.|+|+.++.+++.. |+++ +|....=.+ . +.. +++
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~----~V~~vafsP----------~--d~~--~l~ 328 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD----FVTGVAWSP----------L--DHS--KFT 328 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS----CEEEEEECS----------S--STT--EEE
T ss_pred cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC----CEEEEEEeC----------C--CCC--EEE
Confidence 34557889999987 68888888899999999999999864 7877 443322111 0 111 346
Q ss_pred EcCCCCeEEEeecCCCCeE
Q 012917 385 HAPRKGIIEVWQMRTGPRL 403 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV 403 (453)
-+..+|.|.||+++...|.
T Consensus 329 s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEETTSCEEEEECC-----
T ss_pred EEcCCCeEEEEECCCCCcc
Confidence 7788999999999875444
No 29
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.88 E-value=0.024 Score=55.68 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=59.5
Q ss_pred eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEee
Q 012917 35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH 113 (453)
Q Consensus 35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~ 113 (453)
++=|++ ++||+|.+..+-+ |+-.. +++.-.-.+.. .++.||++.|-| |-..+++|..+|.|++|+ ++|.++.
T Consensus 111 l~wS~~-n~lAvgld~tV~l--Wd~~t-g~~~~~~~~~~-~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 111 VDWSSG-NVLAVALDNSVYL--WSASS-GDILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp EEECTT-SEEEEEETTEEEE--EETTT-CCEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEECCC-CEEEEEeCCEEEE--EECCC-CCEEEEEEecC-CCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 444654 5889998886544 54432 22222222322 457799999865 667899999999999999 6688888
Q ss_pred ecccCccceeEEE
Q 012917 114 RQLIHPGRILKLR 126 (453)
Q Consensus 114 sQ~lh~~pV~~ik 126 (453)
.-.-|..+|..+.
T Consensus 184 ~~~~h~~~v~~~s 196 (420)
T 4gga_A 184 NMTSHSARVGSLS 196 (420)
T ss_dssp EECCCSSCEEEEE
T ss_pred EEeCCCCceEEEe
Confidence 7777888877765
No 30
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.87 E-value=0.011 Score=55.82 Aligned_cols=276 Identities=9% Similarity=0.034 Sum_probs=145.3
Q ss_pred eeeecc-Ccceeeeeecce-EEEEeecCCCC-CceeEee--cC----CCCCCCcEEEEEEEEeCCcEEEEEeccccEEEE
Q 012917 34 NLLCAL-DMHTIALANRYQ-TVIINWADPEG-LVAKIRP--EL----SPIASEYITAIEWLVFEEMRALAVGTSRGYFLV 104 (453)
Q Consensus 34 ~~~~sp-~~~~la~A~~~~-~v~~~w~~~~~-~~~~~~g--~l----~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrf 104 (453)
.++.+| ++++||.+.... +.+-....... ....... .+ .......|+++.|.|- +-..++.|..+|.|++
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-DTGMFTSSSFDKTLKV 126 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-CTTCEEEEETTSEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC-CCcEEEEEeCCCeEEE
Confidence 467789 999988886553 33322222111 1111111 00 0113577999988774 4447888899999999
Q ss_pred EecCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-EEEEeChhHHHHHHHHHHhccccccCCCCccCC
Q 012917 105 YDLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRD 183 (453)
Q Consensus 105 yte~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~ 183 (453)
|+..........-|+.++..+.+-.... ...-+.+...+. |...|-.. + +
T Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~d~~~--------------~-------~-- 177 (408)
T 4a11_B 127 WDTNTLQTADVFNFEETVYSHHMSPVST------KHCLVAVGTRGPKVQLCDLKS--------------G-------S-- 177 (408)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSSCS------SCCEEEEEESSSSEEEEESSS--------------S-------C--
T ss_pred eeCCCCccceeccCCCceeeeEeecCCC------CCcEEEEEcCCCeEEEEeCCC--------------c-------c--
Confidence 9965444444444677777777543321 012233333332 22222100 0 0
Q ss_pred CccccCccCCccceecccC-CCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhh
Q 012917 184 SEDLENSYERLPHQLWNVS-KYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKV 262 (453)
Q Consensus 184 ~~~~~~~~~~L~ykKW~l~-~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~v 262 (453)
. . ..+. ..+.+...++.- .+.+.+++.+.+-.|-+|.........
T Consensus 178 -----~-~-------~~~~~~~~~v~~~~~~~------------~~~~ll~~~~~dg~i~i~d~~~~~~~~--------- 223 (408)
T 4a11_B 178 -----C-S-------HILQGHRQEILAVSWSP------------RYDYILATASADSRVKLWDVRRASGCL--------- 223 (408)
T ss_dssp -----C-C-------EEECCCCSCEEEEEECS------------SCTTEEEEEETTSCEEEEETTCSSCCS---------
T ss_pred -----e-e-------eeecCCCCcEEEEEECC------------CCCcEEEEEcCCCcEEEEECCCCCccc---------
Confidence 0 0 0011 122344444321 122235666777777777665433220
Q ss_pred hhHHHHHHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE
Q 012917 263 VPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV 342 (453)
Q Consensus 263 a~av~S~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv 342 (453)
.. +.... . ... ......+......+.+++.+|++++++++...|.|.++|+.++..+
T Consensus 224 --------~~-----~~~~~----~-~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 224 --------IT-----LDQHN----G-KKS-----QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp --------EE-----CCTTT----T-CSC-----CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred --------cc-----ccccc----c-ccc-----eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 00 00000 0 000 0111224455667899999999999999999999999999999877
Q ss_pred EEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 343 RLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 343 RmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+...+...... ... ........ ... .++++...|.|.||++++|..+..+..+.
T Consensus 281 ~~~~~~~~~~~---------~~~-~~~~~~~~--~~~--~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 281 LVNYGKVCNNS---------KKG-LKFTVSCG--CSS--EFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp CCCCCCCCCCC---------SSC-CCCEECCS--SSS--CEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred eeccccccccc---------ccc-ceeEEecC--CCc--eEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 76654322100 000 00000000 011 23556778999999999999988876544
No 31
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.87 E-value=0.0081 Score=57.46 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=54.3
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
.+.+++.+|+|+++++....|.|.++|+.++..++.++|+.+ +|....-.+. . .+++-+..
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~d-------------g--~~l~s~s~ 332 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDD-------------G--MAVATGSW 332 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECTT-------------S--SCEEEEET
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCC-------------C--CEEEEEcC
Confidence 467899999999999999999999999999999999999987 4433222111 1 13456778
Q ss_pred CCeEEEee
Q 012917 389 KGIIEVWQ 396 (453)
Q Consensus 389 Rg~lEVW~ 396 (453)
+|.|.||+
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.85 E-value=0.018 Score=53.28 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
.....+.+|+.+|+++++|++...|.|.|+|+.++..++..++.....+... .+ . .. ++
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-----~~----------~--~~--~~-- 271 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF-----SP----------N--RY--WL-- 271 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEE-----CS----------S--SS--EE--
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeec-----CC----------C--Cc--ee--
Confidence 3445678899999999999999999999999999999999988654222111 11 1 11 32
Q ss_pred EcCCCCeEEEeecCCCCeEEEEE
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~ 407 (453)
-+...|.|.||+++++..+..+.
T Consensus 272 ~~~~d~~i~iwd~~~~~~~~~~~ 294 (340)
T 4aow_A 272 CAATGPSIKIWDLEGKIIVDELK 294 (340)
T ss_dssp EEEETTEEEEEETTTTEEEEEEC
T ss_pred eccCCCEEEEEECCCCeEEEecc
Confidence 34468999999999888877665
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.84 E-value=0.0045 Score=58.12 Aligned_cols=85 Identities=6% Similarity=-0.067 Sum_probs=64.0
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEc------------------CCceEEEEecccccceeeEEEEEecccccccc
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDT------------------QALVVVRLWKGYRDASCVFMEMLVNKDAATSS 368 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~------------------~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~ 368 (453)
...+.+++.+|++++++++...|.|.++|+ ..+..++.++++.+ .+....-.+
T Consensus 142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~----- 212 (372)
T 1k8k_C 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG----WVHGVCFSA----- 212 (372)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS----CEEEEEECS-----
T ss_pred CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC----eEEEEEECC-----
Confidence 456889999999999999999999999995 47889999987765 332221111
Q ss_pred cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 369 AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 369 ~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+.. +++.+-.+|.|.||+++++..+..+..+.
T Consensus 213 --------~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 213 --------NGS--RVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp --------SSS--EEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred --------CCC--EEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 111 44566789999999999999998887553
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.81 E-value=0.0032 Score=58.51 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=58.1
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
..+.+++.+|+++++|+++..|.|.++|+.++..++.++++.+ .+....=.+. .. +++.+-
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~-------------g~--~l~~~s 334 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ----PISACCFNHN-------------GN--IFAYAS 334 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS----CEEEEEECTT-------------SS--CEEEEE
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC----CceEEEECCC-------------CC--eEEEEe
Confidence 4578999999999999999999999999999999999999876 3322211110 01 223343
Q ss_pred CC---CeEEEeecCCCCeEEEEEec
Q 012917 388 RK---GIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 388 rR---g~lEVW~~~~G~RV~a~~v~ 409 (453)
.+ ..+++|+.+..+++...++.
T Consensus 335 ~d~~~~~~~~~~~~~~~~i~~~~~~ 359 (368)
T 3mmy_A 335 SYDWSKGHEFYNPQKKNYIFLRNAA 359 (368)
T ss_dssp CCCSTTCGGGCCTTSCCEEEEECCT
T ss_pred cccccccccccCCCccceeeehhcC
Confidence 33 35667777777777665543
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.77 E-value=0.013 Score=55.98 Aligned_cols=89 Identities=11% Similarity=0.166 Sum_probs=57.6
Q ss_pred eeecc-CcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecCCcEee
Q 012917 35 LLCAL-DMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGDLVH 113 (453)
Q Consensus 35 ~~~sp-~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~LL~ 113 (453)
++.+| +++.|+.+.....+. -|+-.+.....+.+.- .....|+++.|-| +-..+++|..+|.|++|+.+|..+.
T Consensus 124 ~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 198 (383)
T 3ei3_B 124 MKFNQFNTNQLFVSSIRGATT-LRDFSGSVIQVFAKTD--SWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIF 198 (383)
T ss_dssp EEEETTEEEEEEEEETTTEEE-EEETTSCEEEEEECCC--CSSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEE
T ss_pred EEeCCCCCCEEEEEeCCCEEE-EEECCCCceEEEeccC--CCCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEE
Confidence 44566 556666555443222 2443321111222211 1236688887764 6668999999999999999999988
Q ss_pred ecccCccceeEEEEe
Q 012917 114 RQLIHPGRILKLRVR 128 (453)
Q Consensus 114 sQ~lh~~pV~~ik~r 128 (453)
.-.-|..+|..+.+.
T Consensus 199 ~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFN 213 (383)
T ss_dssp EEECSSSCEEEEEEC
T ss_pred EeccCCCcEEEEEEC
Confidence 888899999998853
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.0052 Score=58.82 Aligned_cols=82 Identities=13% Similarity=0.021 Sum_probs=61.5
Q ss_pred CCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 305 DHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 305 D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
.....+.+++.+| +++++++....|+|.++|+.++..++.++++.+ ++....-.+ . .. .++
T Consensus 260 ~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~----------~--~~--~~l 321 (416)
T 2pm9_A 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WCFKTKFAP----------E--AP--DLF 321 (416)
T ss_dssp CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS----CCCCEEECT----------T--CT--TEE
T ss_pred CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC----ceEEEEECC----------C--CC--CEE
Confidence 4456788999999 899999999999999999999999999998775 221111100 0 00 155
Q ss_pred EEcCCCCeEEEeecCCCCeEE
Q 012917 384 IHAPRKGIIEVWQMRTGPRLL 404 (453)
Q Consensus 384 IyaprRg~lEVW~~~~G~RV~ 404 (453)
+.+-.+|.|.||+++++....
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSS
T ss_pred EEEecCCcEEEEEccCCCCCc
Confidence 778889999999999877543
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.67 E-value=0.022 Score=56.13 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=58.3
Q ss_pred CeeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL 111 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L 111 (453)
.+.+++++++.|+.+.....|. -|+-... ... ..+.. ....|+++.+ +-..+++|..+|.|++|+ ++|.+
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~-iwd~~~~-~~~--~~~~~-h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIK-IWDKNTL-ECK--RILTG-HTGSVLCLQY----DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEE-EEESSSC-CEE--EEECC-CSSCEEEEEC----CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cEEEEEECCCEEEEEeCCCeEE-EEeCCCC-eEE--EEEcC-CCCcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcE
Confidence 5778888888888776653322 2433221 111 11222 2456887766 667999999999999999 66888
Q ss_pred eeecccCccceeEEEE
Q 012917 112 VHRQLIHPGRILKLRV 127 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~ 127 (453)
+..-.-|.++|..+..
T Consensus 206 ~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRF 221 (435)
T ss_dssp EEEECCCCSCEEEEEC
T ss_pred EEEEcCCCCcEEEEEE
Confidence 8777778889888875
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.65 E-value=0.036 Score=50.85 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=55.0
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....+++.+|++++++++...|.|.++|+.++...+ .+++.+ .+....-.+ +.. +++.+-
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~----~v~~~~~~~-------------~~~--~l~~~~ 284 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHES----CVLSLKFAY-------------CGK--WFVSTG 284 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSS----CEEEEEECT-------------TSS--EEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCcc----ceeEEEECC-------------CCC--EEEEec
Confidence 346789999999999999999999999999988654 344443 221111111 111 335566
Q ss_pred CCCeEEEeecCCCCeEEE
Q 012917 388 RKGIIEVWQMRTGPRLLT 405 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a 405 (453)
.+|.|.||+++++..+..
T Consensus 285 ~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 285 KDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp TTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEEECCCCeEEEE
Confidence 799999999999988744
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.64 E-value=0.016 Score=61.18 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+..+...+.+++.+|+|+++++....|.|.|+|+.++..++..++... +....-.+ +. .+|
T Consensus 557 ~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~-----v~~~~~sp-------------~~-~~l 617 (694)
T 3dm0_A 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-----IHALCFSP-------------NR-YWL 617 (694)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSC-----EEEEEECS-------------SS-SEE
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCc-----EEEEEEcC-------------CC-cEE
Confidence 445566788999999999999999999999999999998887765321 21111111 11 133
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCCe
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
+. ..++.|.||+++++..+..+......
T Consensus 618 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~ 645 (694)
T 3dm0_A 618 CA--ATEHGIKIWDLESKSIVEDLKVDLKA 645 (694)
T ss_dssp EE--EETTEEEEEETTTTEEEEEECCCCC-
T ss_pred EE--EcCCCEEEEECCCCCChhhhcccccc
Confidence 32 34566999999999999888765443
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.61 E-value=0.044 Score=50.90 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=60.2
Q ss_pred eeeccC---cc--eeeeeecceEEEEeecCCCCCce-eEeecCCCCCCCcEEEEEEEEeCC--cEEEEEeccccEEEEEe
Q 012917 35 LLCALD---MH--TIALANRYQTVIINWADPEGLVA-KIRPELSPIASEYITAIEWLVFEE--MRALAVGTSRGYFLVYD 106 (453)
Q Consensus 35 ~~~sp~---~~--~la~A~~~~~v~~~w~~~~~~~~-~~~g~l~~~~~e~ITs~~~lp~~d--w~~I~VG~ssG~vrfyt 106 (453)
++.+|. ++ ++|.+....+.+ |+-.....+ .+.+...+...+.|+++.|-|-.. -..+++|..+|.|++|+
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~v--w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTL--YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEE--EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred EEEecccCCCCceEEEECCCCEEEE--EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 556663 44 545554554444 332221122 333333322457899999998743 57999999999999999
Q ss_pred -cCCcEeeecccCccceeEEEEe
Q 012917 107 -LKGDLVHRQLIHPGRILKLRVR 128 (453)
Q Consensus 107 -e~G~LL~sQ~lh~~pV~~ik~r 128 (453)
++|.++..-.-|..+|..|++.
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~~ 124 (366)
T 3k26_A 102 PITMQCIKHYVGHGNAINELKFH 124 (366)
T ss_dssp TTTCCEEEEEESCCSCEEEEEEC
T ss_pred chhceEeeeecCCCCcEEEEEEC
Confidence 5588777666799999999864
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.55 E-value=0.00057 Score=66.88 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=68.1
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+..+...+.+|+.+|+|+++|+....|.|.|+|+.++..++.++|+.+ .|....-... ... +
T Consensus 123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~----~V~~~~~~~~------------~~~--~ 184 (344)
T 4gqb_B 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA----QVTCVAASPH------------KDS--V 184 (344)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS----CEEEEEECSS------------CTT--E
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC----ceEEEEecCC------------CCC--c
Confidence 445667789999999999999999999999999999999999999987 3433221110 111 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
++-+..+|.|.||+++++..+..+..
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~ 210 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGC 210 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC-
T ss_pred eeeeccccccccccccccceeeeeec
Confidence 45677899999999999988776643
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.53 E-value=0.019 Score=64.27 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=63.5
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcE
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDL 111 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~L 111 (453)
.++.||+++.||.+....-|. -|+-..... -++.+ ....|+++.+.|-.+...++.|..+|.|++|+ ++|..
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVK-IWDSATGKLVHTYDE-----HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEEC-----CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred EEEEecCCCEEEEEeCCCeEE-EEECCCCceEEEEcC-----CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 367789998888876654322 244332211 22332 34679999888876778999999999999999 66888
Q ss_pred eeecccCccceeEEEE
Q 012917 112 VHRQLIHPGRILKLRV 127 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~ 127 (453)
+..-.-|..+|..+.+
T Consensus 736 ~~~~~~h~~~v~~~~~ 751 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRF 751 (1249)
T ss_dssp EEEECCCSSCEEEEEE
T ss_pred hheecCCCCCEEEEEE
Confidence 8777789999998885
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.52 E-value=0.065 Score=51.77 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=62.6
Q ss_pred ccCCCCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+......+..+.++| +|++++++...|.|.++|+.++..++.++|+.+ ++....-.+ +..
T Consensus 192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~----~v~~v~~~p-------------~~~- 253 (354)
T 2pbi_B 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES----DVNSVRYYP-------------SGD- 253 (354)
T ss_dssp EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECT-------------TSS-
T ss_pred EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC----CeEEEEEeC-------------CCC-
Confidence 333444566777877 578999999999999999999999999999877 443322111 011
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
+++-+..+|.|.||+++.+..+..+.
T Consensus 254 -~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 254 -AFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 34567789999999999887665554
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.48 E-value=0.041 Score=51.06 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=56.4
Q ss_pred CCeeeEEEECC---CCCEEEEEcCCCcEEEEEcCCceEEEEec-----ccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 307 PRKGERLTLSP---SGSLAAITDSLGRILLLDTQALVVVRLWK-----GYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 307 ~R~~~~i~lsP---~~~laa~tDslGRV~LiD~~~~~ivRmWK-----GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
...+.+++.+| ++++++++...|+|.++|+.++..++.++ ++.+ .+....-.+ +
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-------------~- 270 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS----TVWQVRHLP-------------Q- 270 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS----CEEEEEEET-------------T-
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC----CEEEEEECC-------------C-
Confidence 35678899999 89999999999999999999987776655 5544 222111100 1
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeE
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRL 403 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV 403 (453)
.-.+++-+..+|.|.||+++++.+.
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEECCSCC
T ss_pred CCcEEEEEeCCCcEEEeecCCCccc
Confidence 1135677788999999999987644
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.48 E-value=0.011 Score=56.29 Aligned_cols=228 Identities=10% Similarity=0.004 Sum_probs=117.9
Q ss_pred eeeeccCcceeeeeecc-eEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc-
Q 012917 34 NLLCALDMHTIALANRY-QTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD- 110 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~-~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~- 110 (453)
.++.+|++++||.+... .+.+-..... .......+.. ....|+++.|-| |-..++.|..+|.|++|+.. |.
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~-h~~~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHARTFSD-HDKIVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETT---EEEECCCBCC-CSSCEEEEEECT--TTCCEEEEETTSSEEEC------C
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCC---ceEEEEEEec-CCceEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCc
Confidence 46788999999988443 3333222211 1111222322 346788887764 55678899999999999944 54
Q ss_pred --EeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCeEEEEeChhHHHHHHHHHHhccccccCCCCccCCCcccc
Q 012917 111 --LVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLE 188 (453)
Q Consensus 111 --LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~i~~idG~~L~~~L~~c~~~~~~~~w~~~~~~~~~~~~~ 188 (453)
.+..-.-|..+|..+.+... .+.|.....+..+++ |+-...+ .
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~---------~~~l~~~~~d~~i~i--------------------wd~~~~~----~-- 134 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPN---------EDKFAVGSGARVISV--------------------CYFEQEN----D-- 134 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTT---------SSCCEEEESSSCEEE--------------------CCC-----------
T ss_pred eeeeeEecccCCceEEEEECCC---------CCEEEEEecCCeEEE--------------------EEECCcc----c--
Confidence 34444458888888875321 222333333322211 1100000 0
Q ss_pred CccCCccceecccCCCCceeeEEEeCcCCCCchhhcccccceEEEEeCCCceeEEEEeccCCCcchhhhhhhhhhhHHHH
Q 012917 189 NSYERLPHQLWNVSKYGPCADAAITGLMPPPLMEVQSSQRYFCAVTIGEDSVISAFRLSEDRSRSLVGAILSKVVPATFS 268 (453)
Q Consensus 189 ~~~~~L~ykKW~l~~~~~i~Daa~~G~~~p~~~d~~s~~~~~~~i~vG~~P~la~y~~~e~~~~s~~~a~~S~va~av~S 268 (453)
. -..+...-.....+.+.++.- .+ ..+++.+.+-.+-+|......-.. .
T Consensus 135 --~--~~~~~~~~~h~~~v~~~~~~~------------~~-~~l~~~~~d~~i~iwd~~~~~~~~-----------~--- 183 (377)
T 3dwl_C 135 --W--WVSKHLKRPLRSTILSLDWHP------------NN-VLLAAGCADRKAYVLSAYVRDVDA-----------K--- 183 (377)
T ss_dssp --C--CCCEEECSSCCSCEEEEEECT------------TS-SEEEEEESSSCEEEEEECCSSCC------------C---
T ss_pred --c--eeeeEeecccCCCeEEEEEcC------------CC-CEEEEEeCCCEEEEEEEEecccCC-----------C---
Confidence 0 000000000123455544421 01 125555666666666553211000 0
Q ss_pred HHhhhhhccccCCCCCCCCCCCCCccccCCCCccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceE----EEE
Q 012917 269 TISSLSKMIWRSEQSPKKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVV----VRL 344 (453)
Q Consensus 269 ~~~s~ak~~W~~~~~~~~~e~~p~~~~~a~pl~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~i----vRm 344 (453)
.....|+. +.+. ..++..+ .....+.+++.+|+|+++|+....|.|.++|+.++.. ++.
T Consensus 184 ----~~~~~~~~--------~~~~----~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 184 ----PEASVWGS--------RLPF----NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp ----CCSCSSCS--------CCCE----EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred ----cccccccc--------ccch----hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 00001110 0010 1122234 6667789999999999999999999999999999987 888
Q ss_pred eccccc
Q 012917 345 WKGYRD 350 (453)
Q Consensus 345 WKGyRd 350 (453)
++++.+
T Consensus 247 ~~~~~~ 252 (377)
T 3dwl_C 247 VKLSQL 252 (377)
T ss_dssp EECSSS
T ss_pred ecCCCC
Confidence 888876
No 46
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.46 E-value=0.00076 Score=63.64 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.|......+.+|+.+|+++++|++...|.|.|+|+.++..++.++++... +....-.+ +..
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~-- 68 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIA-------------RKN-- 68 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEG-------------GGT--
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeC-------------CCC--
Confidence 46677778999999999999999999999999999999999999988763 22111101 011
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+++-+-.+|.|.||++++|..+..+..+++
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~ 98 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCC
Confidence 446677899999999999999888776544
No 47
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.43 E-value=0.094 Score=50.21 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=56.6
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc--
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD-- 110 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~-- 110 (453)
.++.||+|.+||.+-....|-. |+...+ .......+..+-...|+++.|-| |-..++.|-.+|.+++|+.+ +.
T Consensus 21 ~l~~sp~g~~las~~~D~~i~i-w~~~~~-~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRI-WGTEGD-SWICKSVLSEGHQRTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFE 96 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEE-EEEETT-EEEEEEEECSSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EE
T ss_pred EEEECCCCCEEEEEcCCCeEEE-EEcCCC-cceeeeeeccccCCcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeE
Confidence 4788999999998876643321 332221 11112222222346688887764 66789999999999999854 43
Q ss_pred EeeecccCccceeEEEE
Q 012917 111 LVHRQLIHPGRILKLRV 127 (453)
Q Consensus 111 LL~sQ~lh~~pV~~ik~ 127 (453)
.+..-.-|..+|..+.+
T Consensus 97 ~~~~~~~h~~~v~~v~~ 113 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAW 113 (345)
T ss_dssp EEEEECCCSSCEEEEEE
T ss_pred EEEEccCCCCCceEEEE
Confidence 33444457888888875
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.37 E-value=0.0016 Score=62.87 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=69.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|++++++++...|.|.++|+.++..++.++|+.+. +....-.+ +.. +
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~-------------~~~--~ 195 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIID-------------RGR--N 195 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC----EEEEEEET-------------TTT--E
T ss_pred cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcC-------------CCC--E
Confidence 4556678999999999999999999999999999999999999998873 32221111 111 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
++.+-.+|.|.||+++++..+..+...
T Consensus 196 l~s~~~d~~v~iwd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 196 VLSASLDGTIRLWECGTGTTIHTFNRK 222 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECBT
T ss_pred EEEEcCCCcEEEeECCCCceeEEeecC
Confidence 357788999999999999999988754
No 49
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.019 Score=61.98 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=59.6
Q ss_pred eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEecC-Cc--E
Q 012917 35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDLK-GD--L 111 (453)
Q Consensus 35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~-G~--L 111 (453)
++.+|+++.||.+.....|. =|+-.. ........+.. ....|+++.|.|-.+-..++.|..+|.|++|+.. |. .
T Consensus 15 l~~s~dg~~latg~~dg~I~-vwd~~~-~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 15 AVLDYYGKRLATCSSDKTIK-IFEVEG-ETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp ECCCSSSCCEEEEETTTEEE-EEEEET-TEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEECCCCCeEEEEECCCcEE-EEecCC-CCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 56679999988886554332 122111 11122222322 2466999988776556789999999999999954 54 5
Q ss_pred eeecccCccceeEEEEee
Q 012917 112 VHRQLIHPGRILKLRVRG 129 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~r~ 129 (453)
+..-.-|..+|..+.+..
T Consensus 92 ~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 92 IAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp EEEECCCSSCEEEEEECC
T ss_pred cccccCCCCCeEEEEECC
Confidence 555566889999988643
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.37 E-value=0.0046 Score=56.85 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=64.6
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|+++++++.+..|.|.++|+.++..++.++++.+. +....-.+ +.. +
T Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~-------------~~~--~ 197 (337)
T 1gxr_A 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISN-------------DGT--K 197 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TSS--E
T ss_pred cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc----eEEEEECC-------------CCC--E
Confidence 3444556788999999999999999999999999999999999987662 22211111 011 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
++.+-.+|.|.+|+++++..+..+..
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~~ 223 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHDF 223 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcEEEEECCCCceEeeecC
Confidence 34556799999999999888776653
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.35 E-value=0.094 Score=48.57 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=54.7
Q ss_pred CCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCc-------------------eEEEEecccccceeeEEEEEecccc
Q 012917 305 DHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQAL-------------------VVVRLWKGYRDASCVFMEMLVNKDA 364 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~-------------------~ivRmWKGyRdAqc~Wi~~~~~~~~ 364 (453)
.....+.+++.+|+++ ++++....|.|.++|+.++ ..++.++++.+ .|....-.+
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~- 331 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ----PISSLDWSP- 331 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS----CEEEEEECS-
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC----CeeEEEEcC-
Confidence 4456688899999998 8999999999999999864 45666777655 222111111
Q ss_pred cccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeE
Q 012917 365 ATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRL 403 (453)
Q Consensus 365 ~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV 403 (453)
. .. +|++-+..+|.|.||++.++.+|
T Consensus 332 ---------~--~~--~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 332 ---------D--KR--GLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp ---------S--ST--TEEEEEETTSEEEEEEECC----
T ss_pred ---------C--CC--eEEEEecCCCcEEEEECCCcccC
Confidence 0 11 35556888999999999988764
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.35 E-value=0.05 Score=53.46 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=58.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
.+.++.. ++++++++...|.|.++|+.++..++.++|+...-..+-. .+ . +++-+-.
T Consensus 281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~----~~---------------~--~l~~~~~ 337 (445)
T 2ovr_B 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KD---------------N--ILVSGNA 337 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE----ET---------------T--EEEEEET
T ss_pred ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE----eC---------------C--EEEEEeC
Confidence 3444444 7889999999999999999999999999998874333221 10 1 3345667
Q ss_pred CCeEEEeecCCCCeEEEEEe
Q 012917 389 KGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v 408 (453)
+|.|.||++++|..+..+..
T Consensus 338 dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp TSCEEEEETTTCCEEEEECS
T ss_pred CCeEEEEECCCCcEEEEEcc
Confidence 99999999999999988875
No 53
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.15 Score=50.45 Aligned_cols=136 Identities=10% Similarity=-0.081 Sum_probs=74.5
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceee----------EEEEEe-cccccccccccCCC
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCV----------FMEMLV-NKDAATSSAYYAPV 374 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~----------Wi~~~~-~~~~~~~~~~~~~~ 374 (453)
....+.+++.+ +++++++....|+|.|+|+.++..++.++........ |..... ..+..-......+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~- 317 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK- 317 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence 34567888999 9999999999999999999999999988754211000 000000 0000000000011
Q ss_pred CCCccEEEEEEcCCCCeEEEeec--CCC---CeEEEEEecCCe--EEeccccccCccCC-CCC---CcCcEEEEEeCCCC
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQM--RTG---PRLLTIQCAKGS--KILQPTYRFGSSMA-SSP---YVPLEVFLLNGDSG 443 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~--~~G---~RV~a~~v~~~~--~Ll~~~~~~~g~~~-~~~---~~~~~~~lld~~~g 443 (453)
+ .-+|++-....|.|.||++ ..+ ..+..+..+... .-+.++..+..... ..+ -...++|-++..+|
T Consensus 318 --~-~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 318 --N-LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp --S-SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred --C-CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 1 1155566657899999999 666 455555544221 11222222222111 111 11258899999888
Q ss_pred ceE
Q 012917 444 QLS 446 (453)
Q Consensus 444 ~l~ 446 (453)
.+.
T Consensus 395 ~~~ 397 (450)
T 2vdu_B 395 SFV 397 (450)
T ss_dssp EEE
T ss_pred eEE
Confidence 775
No 54
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.32 E-value=0.0042 Score=61.47 Aligned_cols=92 Identities=15% Similarity=0.267 Sum_probs=73.2
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
..+..+...+.+++.+|++++++++...|.|.++|+.++..++.++|+++ |+......+ +..
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~----~v~~~~~~~-------------~g~- 247 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE----WVRMVRPNQ-------------DGT- 247 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECT-------------TSS-
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc----cEEEEEECC-------------CCC-
Confidence 34556667899999999999999999999999999999999999999988 665543321 111
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+++-+..+|.|.||+++++..+..+..+.+
T Consensus 248 -~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~ 277 (410)
T 1vyh_C 248 -LIASCSNDQTVRVWVVATKECKAELREHRH 277 (410)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred -EEEEEcCCCeEEEEECCCCceeeEecCCCc
Confidence 456677899999999999998887765443
No 55
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.27 E-value=0.097 Score=48.43 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc-cc
Q 012917 307 PRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY-RD 350 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy-Rd 350 (453)
...+.+++.+|+++++++.+..|+|.++|+.++..++.++++ .+
T Consensus 251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~ 295 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS
T ss_pred ceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC
Confidence 346789999999999999999999999999999999999998 54
No 56
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.0019 Score=61.87 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=80.3
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+++.+|+++++|++...|.|.++|+.++..++.++|+.+ ++....-.+ +.. +
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~sp-------------~~~--~ 262 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS----WVLNVAFCP-------------DDT--H 262 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS----CEEEEEECT-------------TSS--E
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC----ceEEEEECC-------------CCC--E
Confidence 444445678899999999999999999999999999999999999987 443322111 111 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCCeEEeccccccCccCCCCCCcCc-EEEEEeCCCCceEEEe
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSMASSPYVPL-EVFLLNGDSGQLSVLN 449 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~-~~~lld~~~g~l~~i~ 449 (453)
++-+..+|.|.||+++++..+..+.-+.+. +.+. .|++. +.++--.+||.++..+
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~--------v~~v----~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ--------VWGV----KYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC--------EEEE----EECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCEEEEEEcCCCCc--------EEEE----EECCCCCEEEEEeCCCeEEEEe
Confidence 456778999999999999988877533221 1111 13332 2344445678887765
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.23 E-value=0.17 Score=49.07 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=42.1
Q ss_pred CCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEE
Q 012917 76 SEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRV 127 (453)
Q Consensus 76 ~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~ 127 (453)
.+.|+++.|-| |-..+++|..+|.|++|+ ++|..+..-.-|..+|..+..
T Consensus 134 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 184 (401)
T 4aez_A 134 STYVASVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW 184 (401)
T ss_dssp TCCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECC--CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE
Confidence 56799998876 667899999999999999 668877777788899988876
No 58
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.22 E-value=0.0019 Score=61.87 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=66.5
Q ss_pred cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccEE
Q 012917 304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
......+.+++.+|+|+++|+....|.|.++|+.++..++.++|+... .+.|- + +..
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s------p-------------d~~-- 219 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS------P-------------DSQ-- 219 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC------T-------------TSC--
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEc------C-------------CCC--
Confidence 334456788999999999999999999999999999999999998763 11221 0 111
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++.+..+|.|.||+++++..+..+.-+.
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 45678889999999999998877765443
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.003 Score=60.01 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
....+..++.+|+++++|++...|.|.++| .++..++.++++.+. +....-.+ +.. +++.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~----v~~~~~~~-------------~~~--~l~~ 166 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP----IVSVKWNK-------------DGT--HIIS 166 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC----EEEEEECT-------------TSS--EEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc----EEEEEECC-------------CCC--EEEE
Confidence 445789999999999999999999999999 788888999887762 22211111 111 3346
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+-.+|.|.+|+++++..+..+.....
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECCC--
T ss_pred EecCCeEEEEECCCCcEEEEeecccc
Confidence 67799999999999999988876554
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0018 Score=63.21 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
....+.+++.+|++++++++...|.|.++|+.++..++.|+ +... .+.-+.....-. .+. .+++
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~s------------~~~--~~l~ 277 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-PITHVEVCQFYG------------KNS--VIVV 277 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-EEEEEEECTTTC------------TTE--EEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-ceEEEEeccccC------------CCc--cEEE
Confidence 34578899999999999999999999999999999999997 5554 222222211100 011 3556
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
-+-.+|.|.||++++|..+..+..+.
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSD 303 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSS
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence 78889999999999999999988554
No 61
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.13 E-value=0.0045 Score=60.61 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=65.9
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
....+.+++.+|+|+++|++...|.|.|+|+.++..++.++|+.+. |....-.+ +.. +++.
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p-------------~~~--~l~s 182 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFP-------------SGD--KLVS 182 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECT-------------TSS--EEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcC-------------CCC--EEEE
Confidence 3445789999999999999999999999999999999999999873 32211111 011 3467
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecC
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+-.+|.|.||++++|..+..+....
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~~~~~ 207 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTLSIED 207 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSS
T ss_pred ecCCCcEEEEECCCCeeEEEEEcCC
Confidence 7889999999999998877766443
No 62
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.05 E-value=0.0031 Score=61.70 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=61.5
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
.+......+.+++.||+|+++|+....|.|.|+|+.++..++. .+|+.+ +|....=.+ +..
T Consensus 264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~----~V~~v~fSp-------------dg~- 325 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF----AITEVTISP-------------DST- 325 (365)
T ss_dssp EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS----CEEEEEECT-------------TSC-
T ss_pred eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC----CEEEEEECC-------------CCC-
Confidence 3566667789999999999999999999999999999999985 589988 443322111 111
Q ss_pred EEEEEcCCCCeEEEeecCC
Q 012917 381 CLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~ 399 (453)
+++-+..+|.|.||+++.
T Consensus 326 -~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 326 -YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -EEEEEETTSEEEEEECCT
T ss_pred -EEEEEeCCCeEEEEEcCC
Confidence 456788999999999964
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.00 E-value=0.0071 Score=59.93 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=60.8
Q ss_pred cCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecc---cccccccccCCCCCCccE
Q 012917 304 KDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNK---DAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~---~~~~~~~~~~~~k~~~~l 380 (453)
..+...+.+++.+|+|++++++...|.|.|+|+.++..+....++-.....++...... +.........+ +..
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~- 368 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP---DPN- 368 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC---CTT-
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC---CCC-
Confidence 34456688899999999999999999999999999988888777655333222111000 00000000000 000
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
+++......+.|+||+..+|+.+..+.
T Consensus 369 ~~~~~~~~~~~i~iwd~~~g~~~~~l~ 395 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNSGKMMCQLY 395 (435)
T ss_dssp SCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred eEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 111222234679999999999887764
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.99 E-value=0.0041 Score=60.42 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=59.6
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe-cccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW-KGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW-KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
.....+.+++.+|++++++++...|.|.++|+.++..++.+ +++.+..+.-+.... +.. ++
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--~l 235 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----------------EGK--IL 235 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS----------------TTE--EE
T ss_pred CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC----------------CCc--EE
Confidence 34567889999999999999999999999999999999998 788765332222211 111 22
Q ss_pred EEc---CCCCeEEEeecCCCCe
Q 012917 384 IHA---PRKGIIEVWQMRTGPR 402 (453)
Q Consensus 384 Iya---prRg~lEVW~~~~G~R 402 (453)
+.+ ...|.|.||+++++..
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSS
T ss_pred EEeccCCCCceEEEEcCccccC
Confidence 333 6789999999998765
No 65
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.98 E-value=0.0048 Score=58.65 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=67.6
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
+..|..+...+..++.+|+|++++++...|.|-|+|+.++..++.++|+.+. +....-.+ +.
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~-------------~~- 119 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD----VMSVDIDK-------------KA- 119 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECT-------------TS-
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----EEEEEEcC-------------CC-
Confidence 3457777888999999999999999999999999999999999999999873 22211111 11
Q ss_pred EEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
-+++-+..+|.|.||+++ +.++..+.
T Consensus 120 -~~l~s~s~D~~i~vwd~~-~~~~~~~~ 145 (319)
T 3frx_A 120 -SMIISGSRDKTIKVWTIK-GQCLATLL 145 (319)
T ss_dssp -CEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred -CEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence 155778899999999996 55555443
No 66
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0027 Score=60.64 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=62.3
Q ss_pred CCeeeEEEECC--CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 307 PRKGERLTLSP--SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 307 ~R~~~~i~lsP--~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
...+..++.+| ++++++++...|.|.|+|+.++..+++.++..+..+.-+.... +. -+++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p----------------dg--~~la 186 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK----------------DS--LLLA 186 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT----------------TS--CEEE
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC----------------CC--CEEE
Confidence 35688999999 9999999999999999999999998888666554432222211 11 1445
Q ss_pred EcCCCCeEEEeecCCCCeE-EEEEe
Q 012917 385 HAPRKGIIEVWQMRTGPRL-LTIQC 408 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV-~a~~v 408 (453)
-+-.+|.|.||+++++..+ ..+..
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~ 211 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPV 211 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCC
T ss_pred EEcCCCEEEEEECCCCCCCccEEec
Confidence 5678999999999998877 66655
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.94 E-value=0.0076 Score=54.93 Aligned_cols=82 Identities=10% Similarity=0.070 Sum_probs=61.0
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc----eEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~----~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
.+..++..+.+|+.+|+++++|++...|.|.++|+.++ ..++.++|+.+. |....-.+ . .+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~----------~-~d 70 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS----IVAIDWAS----------P-EY 70 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC----EEEEEECC----------G-GG
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc----EEEEEEcC----------C-CC
Confidence 36677788999999999999999999999999999987 688888888773 22211110 0 00
Q ss_pred ccEEEEEEcCCCCeEEEeecCCC
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G 400 (453)
.. +++-+-.+|.|.||+++++
T Consensus 71 ~~--~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 71 GR--IIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp CS--EEEEEETTSCEEEEEECTT
T ss_pred CC--EEEEEcCCCeEEEEecCCC
Confidence 11 3456677999999999887
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.94 E-value=0.012 Score=57.33 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=65.8
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|++++++++...|.|.++|+.++..++.++++.++ +....-.+ . ... |
T Consensus 213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~p----------~--~~~--l 274 (401)
T 4aez_A 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA----VKAVAWCP----------W--QSN--L 274 (401)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC----CCEEEECT----------T--STT--E
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce----EEEEEECC----------C--CCC--E
Confidence 4455677889999999999999999999999999999999998887663 22111111 0 011 3
Q ss_pred EEEc--CCCCeEEEeecCCCCeEEEEEec
Q 012917 383 AIHA--PRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 383 vIya--prRg~lEVW~~~~G~RV~a~~v~ 409 (453)
++-+ -.+|.|.+|++++|..+..+..+
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEECS
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence 3333 37999999999999988877644
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.92 E-value=0.23 Score=45.17 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=57.4
Q ss_pred eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cCCcEee
Q 012917 35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LKGDLVH 113 (453)
Q Consensus 35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~G~LL~ 113 (453)
++=|+++ +||+|....+-+ |+-... .+.-.-.+.. .++.|+++.+-| +-..++.|..+|.|++|+ ++|.++.
T Consensus 31 l~WS~~~-~lAvg~D~tV~i--Wd~~tg-~~~~~~~~~~-~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 31 VDWSSGN-VLAVALDNSVYL--WSASSG-DILQLLQMEQ-PGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp EEECTTS-EEEEEETTEEEE--EETTTC-CEEEEEECCS-TTCCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCC-EEEEEeCCEEEE--EECCCC-CEEEEEEecC-CCCeEEEEEECC--CCCEEEEEECCCcEEEeecCCceeEE
Confidence 5567776 889998876544 654432 2211112222 356799887765 556889999999999999 6688877
Q ss_pred ecccCccceeEEE
Q 012917 114 RQLIHPGRILKLR 126 (453)
Q Consensus 114 sQ~lh~~pV~~ik 126 (453)
...-|..++..+.
T Consensus 104 ~~~~h~~~~~~~~ 116 (318)
T 4ggc_A 104 NMTSHSARVGSLS 116 (318)
T ss_dssp EEECCSSCEEEEE
T ss_pred EecCccceEEEee
Confidence 7777777766554
No 70
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.18 Score=54.25 Aligned_cols=68 Identities=6% Similarity=-0.024 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcEEEEEcCCc----eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEE
Q 012917 318 SGSLAAITDSLGRILLLDTQAL----VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~----~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE 393 (453)
++++++++...|.|.++|+.++ ..++..+|+.+. +....-.+ ..... -+++.+..+|.|.
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~----V~~l~~sp----------~~~~~--~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSP----------TVLLR--SYLASVSQDRTCI 232 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECC----------CCSSS--EEEEEEESSSCEE
T ss_pred CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc----EEEEEecc----------CCCCC--CEEEEEecCCEEE
Confidence 6899999999999999999887 777888887762 22211111 00001 2556778899999
Q ss_pred EeecCCCC
Q 012917 394 VWQMRTGP 401 (453)
Q Consensus 394 VW~~~~G~ 401 (453)
||+++++.
T Consensus 233 iwd~~~~~ 240 (753)
T 3jro_A 233 IWTQDNEQ 240 (753)
T ss_dssp EEEESSSS
T ss_pred EecCCCCC
Confidence 99999874
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.87 E-value=0.0053 Score=59.66 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=67.3
Q ss_pred CCccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEe--cccccceeeEEEEEecccccccccccCCCC
Q 012917 299 PLTCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLW--KGYRDASCVFMEMLVNKDAATSSAYYAPVK 375 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmW--KGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k 375 (453)
++..+..+...+..|+.+|++ +++++++..|.|.++|+.++..++.+ +++.+ .+....-.+
T Consensus 123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~------------ 186 (402)
T 2aq5_A 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD----TIYSVDWSR------------ 186 (402)
T ss_dssp CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS----CEEEEEECT------------
T ss_pred ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC----ceEEEEECC------------
Confidence 344577778889999999998 69999999999999999999999999 77766 222211111
Q ss_pred CCccEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
+.. +++.+-.+|.|.||+++++..+..+
T Consensus 187 -~~~--~l~~~~~d~~i~iwd~~~~~~~~~~ 214 (402)
T 2aq5_A 187 -DGA--LICTSCRDKRVRVIEPRKGTVVAEK 214 (402)
T ss_dssp -TSS--CEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -CCC--EEEEEecCCcEEEEeCCCCceeeee
Confidence 011 2345668999999999999888877
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.83 E-value=0.014 Score=56.48 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=63.7
Q ss_pred ccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceE----EEEecccccc-----------eeeEEEEEecccccc
Q 012917 303 LKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVV----VRLWKGYRDA-----------SCVFMEMLVNKDAAT 366 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~i----vRmWKGyRdA-----------qc~Wi~~~~~~~~~~ 366 (453)
+......+.+++.+|++ +++|+....|.|.++|+.++.. ++.+++..+- .+.-+....
T Consensus 222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------ 295 (447)
T 3dw8_B 222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH------ 295 (447)
T ss_dssp GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT------
T ss_pred ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC------
Confidence 44455678999999998 9999999999999999999998 8999998762 232222211
Q ss_pred cccccCCCCCCccEEEEEEcCCCCeEEEeecCC-CCeEEEEEecC
Q 012917 367 SSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCAK 410 (453)
Q Consensus 367 ~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~~ 410 (453)
+.. +|+. +-. |.|.||++++ +..+..+..+.
T Consensus 296 ----------~g~-~l~~-~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 296 ----------SGR-YMMT-RDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp ----------TSS-EEEE-EES-SEEEEEETTCCSSCSCCEESCG
T ss_pred ----------CCC-EEEE-eeC-CeEEEEeCCCCccccceeeccc
Confidence 111 4444 344 9999999998 88887777553
No 73
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0076 Score=54.93 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
....+..++.+|+++ +++....|.|.++|+.++..++.++++.+ .+....-.+ +. . ++.
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~-------------~~-~--l~~ 241 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES----FVYCIKLLP-------------NG-D--IVS 241 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS----CEEEEEECT-------------TS-C--EEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc----eEEEEEEec-------------CC-C--EEE
Confidence 456688999999999 66778889999999999999999998876 333221111 11 1 345
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+-.+|.|.||+++++..+..+..+.+
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~ 267 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAI 267 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSS
T ss_pred EecCCEEEEEECCCCceeEEEeccCc
Confidence 67899999999999999988876543
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.75 E-value=0.016 Score=53.71 Aligned_cols=89 Identities=10% Similarity=0.169 Sum_probs=66.1
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc--eeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA--SCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA--qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+......+.+++.+|+++++++++..|.|.++|+.++..+++. ++.+. .+.|.. .. +.
T Consensus 82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~---~~--------------~~-- 141 (368)
T 3mmy_A 82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHDAPVKTIHWIK---AP--------------NY-- 141 (368)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEEEE---CS--------------SC--
T ss_pred eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-cccCceEEEEEEe---CC--------------CC--
Confidence 4445567889999999999999999999999999999988854 44432 122221 11 11
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
-+++.+-.+|.|.||+++++..+..+..+..
T Consensus 142 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 172 (368)
T 3mmy_A 142 SCVMTGSWDKTLKFWDTRSSNPMMVLQLPER 172 (368)
T ss_dssp EEEEEEETTSEEEEECSSCSSCSEEEECSSC
T ss_pred CEEEEccCCCcEEEEECCCCcEEEEEecCCC
Confidence 2456778899999999999998888876654
No 75
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.74 E-value=0.0047 Score=60.07 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=63.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+++.+|+|+++++....|.|.++|+.++..++.++|+.+. +....-... .+ . +
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~-----------~~-~--~ 196 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----VNCVAACPG-----------KD-T--I 196 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTT-----------CS-S--C
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEccC-----------CC-c--e
Confidence 3455667899999999999999999999999999999999999998873 322211110 01 1 3
Q ss_pred EEEcCCCCeEEEeecCCCCeEEE
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLT 405 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a 405 (453)
++.+..+|.|.||+++++..+..
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCB
T ss_pred eeeeccCCceEEEECCCCceeee
Confidence 35667789999999988765443
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.72 E-value=0.0067 Score=57.81 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCeeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceEEEEecc-------------cccceeeEEEEEecccccccccc
Q 012917 307 PRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKG-------------YRDASCVFMEMLVNKDAATSSAY 370 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDsl---GRV~LiD~~~~~ivRmWKG-------------yRdAqc~Wi~~~~~~~~~~~~~~ 370 (453)
...+.+++.+|++++++++... |.|.++|+.++..++.+++ +.+ ++....-.+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~------- 301 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS----WVMSLSFND------- 301 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS----CEEEEEECS-------
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC----cEEEEEECC-------
Confidence 5668899999999999998777 9999999999999999998 554 222211111
Q ss_pred cCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 371 YAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 371 ~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
+.. +++-+..+|.|.||+++++..+..+.
T Consensus 302 ------~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 302 ------SGE--TLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp ------SSS--EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ------CCC--EEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 111 33456689999999999999999888
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.69 E-value=0.014 Score=57.47 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+|+.+|+|+++|+....|.|.|+|+.++..++.++|+...-..+-. + . .+
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~---~-~-----------------~~ 201 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---N-S-----------------YI 201 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---E-T-----------------TE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee---C-C-----------------CE
Confidence 4455667899999999999999999999999999999999999999874433211 1 0 13
Q ss_pred EEEcCCCCeEEEeecCC
Q 012917 383 AIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~ 399 (453)
++-+.+++.+.+|+.+.
T Consensus 202 l~sgs~d~~i~~~d~~~ 218 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRV 218 (420)
T ss_dssp EEEEETTSEEEEEETTS
T ss_pred EEEEeCCCceeEeeecc
Confidence 34556677777777665
No 78
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.69 E-value=0.0072 Score=60.89 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=78.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+.+++.+|+|+++|+.+..|+|.++|+.++..++..+|.-...+.-+........ ..+. .+ +. -+
T Consensus 484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---~~~~--~~-~~--~~ 555 (615)
T 1pgu_A 484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG---ANEE--EI-EE--DL 555 (615)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----------CC-SC--CE
T ss_pred cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc---cccc--cc-CC--CE
Confidence 45566778999999999999999999999999999999999998833333333332110000 0000 00 11 14
Q ss_pred EEEcCCCCeEEEeecCCC-CeEEEEEecCCeEEeccccccCccCCCCCCcC-cEEEEEeCCCCceEEEec
Q 012917 383 AIHAPRKGIIEVWQMRTG-PRLLTIQCAKGSKILQPTYRFGSSMASSPYVP-LEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G-~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~-~~~~lld~~~g~l~~i~~ 450 (453)
++-+-.+|.|.||+++++ ..+..+..+.+ ...+-.|.| .+ ++--..||.|+..+-
T Consensus 556 l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~------------~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKD------------GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTT------------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCceechhhhcCcc------------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 456778999999999998 45544321111 001111443 33 555556788877653
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0065 Score=56.85 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=62.7
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcC--CceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~--~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
..+..+...+.+++.+|+++++|++...|.|.++|+. ++..++.++|+.+. +....-.. .+ +.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~----------~~-~~ 69 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAH----------PK-FG 69 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECC----------GG-GC
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc----EEEEEeCC----------CC-CC
Confidence 3466777889999999999999999999999999998 88899999998763 22211100 00 01
Q ss_pred cEEEEEEcCCCCeEEEeecCCCC
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~ 401 (453)
. +++-+-.+|.|.||+++++.
T Consensus 70 ~--~l~s~~~dg~v~iwd~~~~~ 90 (379)
T 3jrp_A 70 T--ILASCSYDGKVLIWKEENGR 90 (379)
T ss_dssp S--EEEEEETTSCEEEEEEETTE
T ss_pred C--EEEEeccCCEEEEEEcCCCc
Confidence 1 34566778999999999886
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.014 Score=61.67 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=68.5
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.|......+..|+.+|+|+++|++...|.|.|+|+.++..++.++|+... +....=.+ +..
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~-------------~~~-- 68 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----VRAGKFIA-------------RKN-- 68 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEG-------------GGT--
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc----EEEEEEeC-------------CCC--
Confidence 46666777999999999999999999999999999999999999988763 22111111 011
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++.+..+|.|.||++++|..+..+..+.
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 23445669999999999999888877543
No 81
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.64 E-value=0.063 Score=51.12 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=61.4
Q ss_pred eeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSPSGSLAAITD-SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....++.+|+|++++++. ..|+|.++|+.++..++..++..... -+.. ..+ .. +|++-..
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~--s~d-------------g~--~l~~~~~ 135 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GLAL--SPD-------------GK--KLYVTNN 135 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE--EEEE--CTT-------------SS--EEEEEET
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc--eEEE--CCC-------------CC--EEEEEeC
Confidence 678999999998776655 45999999999999999888755421 1111 111 11 3545567
Q ss_pred CCCeEEEeecCCCCeEEEEEecCC
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
..|.|.+|++++|..+..+..+.+
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECCSS
T ss_pred CCCEEEEEECCCCcEEEEEecCCC
Confidence 789999999999998888776544
No 82
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.55 E-value=0.066 Score=50.98 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=59.1
Q ss_pred eeeEEEECCCCCEEE-EEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSPSGSLAA-ITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP~~~laa-~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....++.+|+|++++ +....|.|.++|+.++.+++.+++.. .+.-+... .+ .. +|++-..
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~s--pd-------------g~--~l~~~~~ 93 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVS--PD-------------GK--QVYVTNM 93 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEEC--TT-------------SS--EEEEEET
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEEC--CC-------------CC--EEEEEEC
Confidence 468899999998764 45578999999999999999887654 22222211 01 11 4555566
Q ss_pred CCCeEEEeecCCCCeEEEEEecC
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
..|.|.+|++.+|+.+..+..+.
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~~ 116 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTGK 116 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS
T ss_pred CCCEEEEEECCCCeEEEEEeCCC
Confidence 77999999999998887776544
No 83
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.49 E-value=0.071 Score=49.60 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=59.9
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEE-EEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFME-MLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~-~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
...++++|+|+++++++..|+|.++|+.++.+++.++.-.+..-.+.. +.-..+ .. +|.+-...
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-------------g~--~l~~~~~~ 251 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA-------------RQ--RAFITDSK 251 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT-------------TT--EEEEEESS
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC-------------CC--EEEEEeCC
Confidence 456789999999999999999999999999999887652221111111 110111 11 34444556
Q ss_pred CCeEEEeecCCCCeEEEEEecCC
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
.+.|-+|++++|..+..+.++..
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEECCCCcEEEEEEcCCC
Confidence 69999999999999988887653
No 84
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.46 E-value=0.022 Score=52.36 Aligned_cols=87 Identities=7% Similarity=-0.049 Sum_probs=60.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
.....++++|+|++++++| |+|.++|+.++..++.++.-.. ..-+.. .. +.. +|++ +-
T Consensus 241 ~~~~~~~~s~dg~~l~~~~--~~v~~~d~~~~~~~~~~~~~~~--~~~~~~--s~--------------dg~-~l~~-~~ 298 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPLPHS--YYSVNV--ST--------------DGS-TVWL-GG 298 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEECSSC--CCEEEE--CT--------------TSC-EEEE-ES
T ss_pred CceeeEEECCCCCEEEEeC--CeEEEEECCCCcCcceecCCCc--eeeEEE--CC--------------CCC-EEEE-Ec
Confidence 4556799999999888884 9999999999998887763211 111111 00 111 2333 35
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCeEEec
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKGSKILQ 416 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll~ 416 (453)
..|.|.||++.+|..+..+.++.+..++.
T Consensus 299 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 327 (337)
T 1pby_B 299 ALGDLAAYDAETLEKKGQVDLPGNASMSL 327 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEECGGGCCCBT
T ss_pred CCCcEEEEECcCCcEEEEEEcCCCCceeE
Confidence 68999999999999999999876544333
No 85
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.44 E-value=0.019 Score=55.49 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=67.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+.-+...+..++.+|+++.++++...|.|.|+|+.++..++.++|+... +.-+...... +. -+
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~--------------~g--~~ 212 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSE--------------TG--NT 212 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCS--------------SC--CE
T ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCC--------------CC--CE
Confidence 4445667889999999999999999999999999999999999998762 1111111010 11 14
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
++-+..+|.|.+|++++|..+..+..+.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~ 240 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHE 240 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 4667789999999999998887776443
No 86
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.43 E-value=0.017 Score=64.55 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=70.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+..+...+..++.+|+|+++|+....|.|.++|+.++..++.++|+.+ +|....-.+. .. +|
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~----~v~~~~~s~~-------------~~-~l 672 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED----EVLCCAFSSD-------------DS-YI 672 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEEEEEECTT-------------SS-EE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCC----CEEEEEEecC-------------CC-EE
Confidence 556677889999999999999999999999999999999999999887 4433222111 11 33
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
+-+-.+|.|.||++.+|..+..+..+.+
T Consensus 673 -~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 673 -ATCSADKKVKIWDSATGKLVHTYDEHSE 700 (1249)
T ss_dssp -EEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred -EEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence 4456799999999999999988876543
No 87
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.43 E-value=0.053 Score=52.71 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=64.0
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccce---eeEEEEEecccccccccccCCCCCCc
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDAS---CVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAq---c~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
.+..+...+.+|+.+|+|+++|++...|.|-|+|+.++..++++++..+.. ..++.... -.| +.
T Consensus 244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~s~---~g 310 (380)
T 3iz6_a 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA----------FSI---SG 310 (380)
T ss_dssp EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEE----------ECS---SS
T ss_pred EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEE----------ECC---CC
Confidence 355566678899999999999999999999999999999999997754321 11111000 001 11
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
. +++-+-..|.|.||++.++.++..+
T Consensus 311 ~--~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 311 R--LLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp S--EEEEECTTSCEEEEETTTCCEEEEE
T ss_pred C--EEEEEECCCCEEEEECCCCceEEEE
Confidence 1 3344667999999999999888765
No 88
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.41 E-value=0.043 Score=52.33 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=60.5
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.|..+...+..++.+|++++++++...|.|.|+|+.++..++.++|+.+. +....-.+ +..
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp-------------~~~-- 131 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSP-------------DNR-- 131 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC----EEEEEECS-------------STT--
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECC-------------CCC--
Confidence 45666677899999999999999999999999999999999999998873 32221111 111
Q ss_pred EEEEcCCCCeEEEeecC
Q 012917 382 LAIHAPRKGIIEVWQMR 398 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~ 398 (453)
+++-+..+|.|.||+++
T Consensus 132 ~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 132 QILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEEEETTSCEEEEESS
T ss_pred EEEEEcCCCEEEEEecc
Confidence 33567789999999997
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.40 E-value=0.046 Score=51.91 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc---c---ccceeeEEEEEecccccccccccCCCCCCc
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG---Y---RDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG---y---RdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
.....+.+++.+|++ ++++....|.|.++|+.++..++.+++ + .. .+.-+... + +.
T Consensus 184 ~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i~~~---~-------------~~ 245 (397)
T 1sq9_A 184 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFS---P-------------QG 245 (397)
T ss_dssp SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEEC---S-------------ST
T ss_pred CCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC-ccceEEEC---C-------------CC
Confidence 345668899999999 999999999999999999999999998 5 32 22222211 0 11
Q ss_pred cEEEEEEcCCC---CeEEEeecCCCCeEEEEEe
Q 012917 379 CLCLAIHAPRK---GIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 379 ~l~LvIyaprR---g~lEVW~~~~G~RV~a~~v 408 (453)
. +++.+-.+ |.|.||+++++..+..+..
T Consensus 246 ~--~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 246 S--LLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp T--EEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred C--EEEEEecCCCCceEEEEECCCCcccceecc
Confidence 1 33455567 9999999999999988875
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.39 E-value=0.035 Score=50.78 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=46.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVF 355 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~W 355 (453)
+..+...+.+++.+|+|+++|+....|.|.|+|+.++..++.++|+......+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~ 115 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 115 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence 44566778999999999999999999999999999999999999998865543
No 91
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.33 E-value=0.024 Score=53.83 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=68.7
Q ss_pred ccccCCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCC-----ceEEEEecccccceeeEEEEEecccccccccccCCC
Q 012917 301 TCLKDHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQA-----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV 374 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~-----~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~ 374 (453)
..|.-+...+.+|+.+|++ ++++++...|.|.++|+.. +..++.++|+.+ .+....-.+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~----------- 75 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH----IVQDCTLTA----------- 75 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSS----CEEEEEECT-----------
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcc----cEEEEEECC-----------
Confidence 4577888889999999965 8999999999999999864 567889999987 333221111
Q ss_pred CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+.. +++-+..+|.|.||++++|..+..+..++
T Consensus 76 --dg~--~l~s~s~D~~v~~wd~~~~~~~~~~~~h~ 107 (319)
T 3frx_A 76 --DGA--YALSASWDKTLRLWDVATGETYQRFVGHK 107 (319)
T ss_dssp --TSS--EEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred --CCC--EEEEEeCCCEEEEEECCCCCeeEEEccCC
Confidence 111 44677889999999999998877776444
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.043 Score=53.40 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=59.8
Q ss_pred ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc--cccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKG--YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG--yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
.+|+++++++....|.|.++|+.++..++.+++ +.+ .+....-.+ +. -+++-+-.+|.|
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~----~v~~~~~s~-------------~~--~~l~s~~~dg~i 238 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG----AVSSICIDE-------------EC--CVLILGTTRGII 238 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC----CEEEEEECT-------------TS--CEEEEEETTSCE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC----ceEEEEECC-------------CC--CEEEEEcCCCeE
Confidence 778999999999999999999999999999998 444 333222111 11 144667789999
Q ss_pred EEeecCCCCeEEEEEecCC
Q 012917 393 EVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 393 EVW~~~~G~RV~a~~v~~~ 411 (453)
.||+++++..+..+..+..
T Consensus 239 ~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 239 DIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp EEEETTTTEEEEEEBCTTC
T ss_pred EEEEcCCccEEEEEecCCC
Confidence 9999999999988875444
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.25 E-value=0.033 Score=52.58 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=63.5
Q ss_pred ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEec-------------ccccceeeEEEEEecccccccc
Q 012917 303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWK-------------GYRDASCVFMEMLVNKDAATSS 368 (453)
Q Consensus 303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWK-------------GyRdAqc~Wi~~~~~~~~~~~~ 368 (453)
+.-+...+.+++.+| +++++|++...|.|.++|+.++...+..+ |+.+ .+....-
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~------- 107 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY----SVETVQW------- 107 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS----CEEEEEE-------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC----cEEEEEE-------
Confidence 444667899999999 99999999999999999999988776653 2222 1111110
Q ss_pred cccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 369 AYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 369 ~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+. +.. +++.+-.+|.|.||+++++..+..+....
T Consensus 108 ---~~~--~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (408)
T 4a11_B 108 ---YPH--DTG--MFTSSSFDKTLKVWDTNTLQTADVFNFEE 142 (408)
T ss_dssp ---CTT--CTT--CEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred ---ccC--CCc--EEEEEeCCCeEEEeeCCCCccceeccCCC
Confidence 010 111 34556779999999999999888887544
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.016 Score=57.53 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=66.5
Q ss_pred ccCCCCeeeEEEECCC---CCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 303 LKDHPRKGERLTLSPS---GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~---~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
+......+.+|+.+|+ ++++++++..|.|.++|+.++..++. ..|+.+ ++....-.+ .
T Consensus 191 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~sd----------~---- 252 (450)
T 2vdu_B 191 ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH----FVSSICCGK----------D---- 252 (450)
T ss_dssp SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS----CEEEEEECS----------T----
T ss_pred eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC----ceEEEEECC----------C----
Confidence 4455667889999999 99999999999999999999988877 457765 333221111 1
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
. +++.+-.+|.|.||++++|..+..+..+
T Consensus 253 ~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 253 Y--LLLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp T--EEEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred C--EEEEEeCCCeEEEEECCCCcEeeeecch
Confidence 1 3456678999999999999999988754
No 95
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.13 E-value=0.048 Score=51.99 Aligned_cols=91 Identities=13% Similarity=0.232 Sum_probs=68.1
Q ss_pred ccccCCCCeeeEEEE-----CC-CCCEEEEEcCCCcEEEEEcCC-------ceEEEEecccccceeeEEEEEeccccccc
Q 012917 301 TCLKDHPRKGERLTL-----SP-SGSLAAITDSLGRILLLDTQA-------LVVVRLWKGYRDASCVFMEMLVNKDAATS 367 (453)
Q Consensus 301 ~~l~D~~R~~~~i~l-----sP-~~~laa~tDslGRV~LiD~~~-------~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~ 367 (453)
..|..+...+.+|+. +| +++++|++...|.|.|+|+.+ +..++..+|+.+ .|....-.+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~----~V~~~~~~~---- 86 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH----FVSDLALSQ---- 86 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS----CEEEEEECS----
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC----ceEEEEECC----
Confidence 457778888999998 77 899999999999999999974 567788888887 333222111
Q ss_pred ccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 368 SAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 368 ~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+.. +++-+..+|.|.||++++|..+..+..++
T Consensus 87 ---------~~~--~l~s~s~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 87 ---------ENC--FAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp ---------STT--EEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred ---------CCC--EEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 111 45678889999999999998887776443
No 96
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.05 E-value=0.04 Score=51.10 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=58.1
Q ss_pred CeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 308 RKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 308 R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
.....++++| +|++++++ .|+|.++|+.++.+++.++.-... ..+.. ..+ .. +|++ +
T Consensus 255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~--s~d-------------g~--~l~~-~ 312 (349)
T 1jmx_B 255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY--YCVAF--DKK-------------GD--KLYL-G 312 (349)
T ss_dssp SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC--CEEEE--CSS-------------SS--CEEE-E
T ss_pred CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc--cceEE--CCC-------------CC--EEEE-e
Confidence 4567899999 99988888 789999999999999887632221 11111 101 01 2334 5
Q ss_pred CCCCeEEEeecCCCCeEEEEEec
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~ 409 (453)
-..|.|.||++.++..+..+.++
T Consensus 313 ~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 313 GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SBSSEEEEEETTTTEEEEEEECS
T ss_pred cCCCeEEEEeccccceeeeeecC
Confidence 66799999999999999999877
No 97
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.032 Score=53.21 Aligned_cols=80 Identities=9% Similarity=0.159 Sum_probs=55.7
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC----ceEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA----LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~----~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
.|..+...+.+++.+|+|+++|++...|.|.++|+.. ...++..+|+.+ .+....-.+ +
T Consensus 102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p-------------~ 164 (330)
T 2hes_X 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ----DVKHVIWHP-------------S 164 (330)
T ss_dssp EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS----CEEEEEECS-------------S
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC----ceEEEEECC-------------C
Confidence 3556667789999999999999999999999999942 367888888876 232221111 1
Q ss_pred ccEEEEEEcCCCCeEEEeecCCC
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G 400 (453)
.. +++-+..+|.|.||+++++
T Consensus 165 ~~--~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 165 EA--LLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp SS--EEEEEETTSCEEEEEEETT
T ss_pred CC--EEEEEcCCCeEEEEECCCC
Confidence 11 4567788999999998766
No 98
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.93 E-value=0.15 Score=49.18 Aligned_cols=87 Identities=9% Similarity=-0.084 Sum_probs=61.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+......+..++.+|++++.++....|+|.++|+.++..++.+++.... ...+..... .. .|
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~--~l 226 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW-SKILLYDPI---------------RD--LV 226 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS-EEEEEEETT---------------TT--EE
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC-eeEEEEcCC---------------CC--EE
Confidence 4455567888999999999999988999999999999999998865442 222222111 01 34
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
++-....|.|.+|++++|..+..+.
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECC
T ss_pred EEEecCCCcEEEEECCCCcEEEEec
Confidence 3445568899999998877665544
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.88 E-value=1.2 Score=41.86 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=56.1
Q ss_pred eeeccCcceeeeeecceEEEEeecCCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEec-CCc--E
Q 012917 35 LLCALDMHTIALANRYQTVIINWADPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYDL-KGD--L 111 (453)
Q Consensus 35 ~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte-~G~--L 111 (453)
++.+|+|+.||.+-....|-. |+-..+ .......+.. -...|+++.|-|-.+-..++.|-.+|.|++|+. +|. .
T Consensus 19 v~~s~~g~~lasgs~D~~v~l-wd~~~~-~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 19 AQMDYYGTRLATCSSDRSVKI-FDVRNG-GQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp EEECGGGCEEEEEETTTEEEE-EEEETT-EEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred eeEcCCCCEEEEEeCCCeEEE-EEecCC-CcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 667899999888776644321 322211 1111122221 235699988865333457888999999999995 453 4
Q ss_pred eeecccCccceeEEEEe
Q 012917 112 VHRQLIHPGRILKLRVR 128 (453)
Q Consensus 112 L~sQ~lh~~pV~~ik~r 128 (453)
++...-|..+|..+.+-
T Consensus 96 ~~~~~~h~~~V~~v~~~ 112 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWA 112 (316)
T ss_dssp EEEECCCSSCCCEEEEC
T ss_pred EEEccCCCCceEEEEEC
Confidence 44444588888888754
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.82 E-value=0.07 Score=51.59 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=58.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-----EecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-----mWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
....++.+|+++++++....|.|.++|+.++..++ .++|+.. ++....-.+ +. .++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~----~v~~~~~~~-------------~~--~~~ 184 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG----FVETISIPE-------------HN--ELW 184 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC----EEEEEEEGG-------------GT--EEE
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC----ceeEEEEcC-------------CC--EEE
Confidence 34578999988888888888999999999999998 4555544 333221111 11 244
Q ss_pred EEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 384 IHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 384 IyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
+-...+|.|.+|+++++..+..+..
T Consensus 185 ~s~~~d~~v~~~d~~~~~~~~~~~~ 209 (433)
T 3bws_A 185 VSQMQANAVHVFDLKTLAYKATVDL 209 (433)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCEEEEEECCCceEEEEEcC
Confidence 5667789999999999988887763
No 101
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=95.80 E-value=0.061 Score=50.26 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=59.6
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC--ceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA--LVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~--~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+.-+...+.+++.+|+|+++|++...|.|.|+|+.. +..++.++|+.+. |....-.. .+ +..
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~----V~~v~~s~----------~~-~g~- 68 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAH----------PK-FGT- 68 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC----EEEEEECC----------GG-GCS-
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC----eEEEEecC----------CC-cCC-
Confidence 444567788999999999999999999999999974 4778899999873 32221100 00 011
Q ss_pred EEEEEcCCCCeEEEeecCCCC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~ 401 (453)
+++-+..+|.|.||++++|.
T Consensus 69 -~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 69 -ILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp -EEEEEETTTEEEEEEBSSSC
T ss_pred -EEEEEcCCCEEEEEEcCCCc
Confidence 45667789999999998773
No 102
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.75 E-value=0.056 Score=57.01 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=60.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
+..+...+.+++++|+|+++++....|.|.|+|+.++..++.++|+.+. |....-.+ +.. +
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~-------------~~~--~ 486 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSL-------------DNR--Q 486 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECT-------------TSS--C
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC----EEEEEEeC-------------CCC--E
Confidence 5556667889999999999999999999999999999999999999873 22211111 011 3
Q ss_pred EEEcCCCCeEEEeecCCC
Q 012917 383 AIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G 400 (453)
++-+..+|.|.||++...
T Consensus 487 l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 487 IVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp EEEEETTSCEEEECTTSC
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 467788999999998643
No 103
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.73 E-value=0.2 Score=46.53 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=57.2
Q ss_pred eeeEEEECCCCCEEEEEcCC-CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 309 KGERLTLSPSGSLAAITDSL-GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDsl-GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
....++++|+|+++.+++.. |+|.++|+.++.+++..+.-....+.|- . +.. +|.+-..
T Consensus 232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s-----~--------------dg~-~l~v~~~ 291 (353)
T 3vgz_A 232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFN-----P--------------ARN-EAYVTHR 291 (353)
T ss_dssp CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEE-----T--------------TTT-EEEEEET
T ss_pred ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEEC-----C--------------CCC-EEEEEEC
Confidence 45679999999877776655 9999999999999988775332222221 0 111 3445556
Q ss_pred CCCeEEEeecCCCCeEEEEEec
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~ 409 (453)
..|.|.+|++.+|..+..+..+
T Consensus 292 ~~~~v~~~d~~~~~~~~~~~~~ 313 (353)
T 3vgz_A 292 QAGKVSVIDAKSYKVVKTFDTP 313 (353)
T ss_dssp TTTEEEEEETTTTEEEEEEECC
T ss_pred CCCeEEEEECCCCeEEEEEecC
Confidence 6799999999999888777654
No 104
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.71 E-value=0.026 Score=54.96 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=56.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
..+++.+|+|+++++....|.|.++|+.++..++..+....+.-++|....-.+ +.. +++-+..+
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------------dg~--~l~sgs~D 365 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-------------DGS--ALCTGSWD 365 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-------------SSS--EEEEECTT
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-------------CCC--EEEEeeCC
Confidence 678999999999999999999999999999988877433222222333221111 111 45678899
Q ss_pred CeEEEeecCCCCeE
Q 012917 390 GIIEVWQMRTGPRL 403 (453)
Q Consensus 390 g~lEVW~~~~G~RV 403 (453)
|.|.||++..++++
T Consensus 366 ~~i~iW~~~~~~~i 379 (380)
T 3iz6_a 366 KNLKIWAFSGHRKI 379 (380)
T ss_dssp SCEEEEECCSSSSC
T ss_pred CCEEEEecCCCccc
Confidence 99999999877654
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.70 E-value=0.047 Score=51.66 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=59.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce--EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV--VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~--ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+..+...+.+++.+|+|+++|++...|.|.|+|+.++. .++.++|+.+ .|....-... . +..
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~----~V~~v~~~~~---------~--~~~- 72 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG----PVWQVAWAHP---------M--YGN- 72 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS----CEEEEEECCG---------G--GSS-
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc----cEEEEEeCCC---------C--CCC-
Confidence 45566778999999999999999999999999998874 5778899887 3332211000 0 001
Q ss_pred EEEEEcCCCCeEEEeecCCCC--eEEEE
Q 012917 381 CLAIHAPRKGIIEVWQMRTGP--RLLTI 406 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~--RV~a~ 406 (453)
+++-+..+|.|.||++++|. ++..+
T Consensus 73 -~l~s~s~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 73 -ILASCSYDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp -CEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred -EEEEEECCCEEEEEECCCCcceEEEEc
Confidence 34567789999999999874 44443
No 106
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.68 E-value=0.18 Score=47.81 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=26.6
Q ss_pred eeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE
Q 012917 310 GERLTLSPSGSLAAITD-SLGRILLLDTQALVV 341 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i 341 (453)
...++++|+|+++++++ ..++|.++|+.++.+
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 45799999999887776 689999999987754
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.68 E-value=0.064 Score=52.76 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=57.9
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
.+++++++++++....|.|.++|+.++..++..+|+.+. |....- +. . +++-+-.+|.|
T Consensus 137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~-~~--------------~--~l~sg~~dg~i 195 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY-DE--------------R--VIITGSSDSTV 195 (435)
T ss_dssp EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC-CS--------------S--EEEEEETTSCE
T ss_pred EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE-CC--------------C--EEEEEcCCCeE
Confidence 466779999999999999999999999999999998873 322211 10 1 44566778899
Q ss_pred EEeecCCCCeEEEEEec
Q 012917 393 EVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 393 EVW~~~~G~RV~a~~v~ 409 (453)
.||++++|..+..+..+
T Consensus 196 ~vwd~~~~~~~~~~~~h 212 (435)
T 1p22_A 196 RVWDVNTGEMLNTLIHH 212 (435)
T ss_dssp EEEESSSCCEEEEECCC
T ss_pred EEEECCCCcEEEEEcCC
Confidence 99999888887776544
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.042 Score=52.28 Aligned_cols=75 Identities=8% Similarity=0.033 Sum_probs=55.5
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE-EEecc-cccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVV-RLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv-RmWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
.+.+++.+|+|+++|+....|.|.++|+.++..+ +.+++ +.+ .|....-.+ + ..+|+.-.
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~~l~fs~-------------~-g~~l~s~~ 233 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEA----KIKEVKFAD-------------N-GYWMVVEC 233 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTS----CEEEEEECT-------------T-SSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCC----CEEEEEEeC-------------C-CCEEEEEe
Confidence 3678999999999999999999999999999988 88888 654 333222111 1 11444444
Q ss_pred CCCCeEEEeecCCCCeE
Q 012917 387 PRKGIIEVWQMRTGPRL 403 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV 403 (453)
.+.|.||+++++..+
T Consensus 234 --~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 234 --DQTVVCFDLRKDVGT 248 (343)
T ss_dssp --SSBEEEEETTSSTTC
T ss_pred --CCeEEEEEcCCCCcc
Confidence 569999999998765
No 109
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.62 E-value=0.049 Score=53.47 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=63.2
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
|..+...... +++++++++++....|.|.++|+.++..++.++|+.+. |....-.+ +. +
T Consensus 117 l~~h~~~v~~-~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~-------------~~---~ 175 (464)
T 3v7d_B 117 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAH-------------GG---I 175 (464)
T ss_dssp EECCSSSCEE-EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECS-------------TT---E
T ss_pred EcCCCCCcEE-EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcC-------------CC---E
Confidence 4444333322 56677889999999999999999999999999998873 33221111 11 4
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
++-+..+|.|.||++++|..+..+..+.
T Consensus 176 l~s~s~dg~i~vwd~~~~~~~~~~~~h~ 203 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHN 203 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEEeCCCCEEEEECCCCcEEEEECCCC
Confidence 5667789999999999998887776443
No 110
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.58 E-value=0.032 Score=54.91 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=35.1
Q ss_pred EECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc
Q 012917 314 TLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 351 (453)
Q Consensus 314 ~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA 351 (453)
+++|+|+++++.+..|.|.++|+.++..++.++|+.+.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 161 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC
Confidence 67788999999999999999999999999999999874
No 111
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.45 E-value=0.12 Score=49.44 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=58.3
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
.+...+.+|+.+|+|+++|++...|.|.|+|+.++ ..++..+|+.+. |....-.+ +.. +
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~----v~~v~~sp-------------~~~--~ 119 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE----VKSVAWAP-------------SGN--L 119 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC----EEEEEECT-------------TSS--E
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC----ceEEEEeC-------------CCC--E
Confidence 45667899999999999999999999999999876 467888888773 32221111 011 4
Q ss_pred EEEcCCCCeEEEeecCCCCe
Q 012917 383 AIHAPRKGIIEVWQMRTGPR 402 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~R 402 (453)
++-+-.+|.|.||+++.+..
T Consensus 120 l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp EEEEETTSCEEEEEECTTSC
T ss_pred EEEEECCCeEEEEECCCCCC
Confidence 45677899999999987643
No 112
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.43 E-value=0.078 Score=55.28 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=65.7
Q ss_pred ccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 303 LKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
|..+.+.+.+++.+|++. ++|++...|.|.|+|..++..++.++|+.+ +|....-.+ +..
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~----~V~~v~fsp-------------dg~-- 203 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK----FVHSVRYNP-------------DGS-- 203 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS----CEEEEEECT-------------TSS--
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC----ceEEEEECC-------------CCC--
Confidence 455667899999999986 577888889999999999999999999988 554433221 111
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
+++-+..+|.|.||++++|..+..+
T Consensus 204 ~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEC
T ss_pred EEEEEECCCcEEEEECCCCcEeeee
Confidence 4567888999999999888776655
No 113
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.40 E-value=0.23 Score=45.56 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=52.8
Q ss_pred eeEEEECCCCCEEEEEc------------CCCcEEEEEcCCceEEEEeccccc-ceeeEEEEEecccccccccccCCCCC
Q 012917 310 GERLTLSPSGSLAAITD------------SLGRILLLDTQALVVVRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKS 376 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tD------------slGRV~LiD~~~~~ivRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~ 376 (453)
...++++|+|+++++++ .-++|.++|+.++.+++..+.-.. ..+.|- .+
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s-----~d------------- 145 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWA-----RD------------- 145 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEEC-----TT-------------
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEEC-----CC-------------
Confidence 34688999998888875 469999999999999887764221 111110 01
Q ss_pred CccEEEEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 377 DYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 377 ~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
...++.. .+.|.+|++.+|..+..+..+.
T Consensus 146 g~~l~~~-----~~~i~~~d~~~~~~~~~~~~~~ 174 (337)
T 1pby_B 146 GSKLYGL-----GRDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp SSCEEEE-----SSSEEEEETTTTEEEEEECSTT
T ss_pred CCEEEEe-----CCeEEEEECCCCcEeeeeeccc
Confidence 1112222 6889999999998887776554
No 114
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.33 E-value=0.053 Score=51.41 Aligned_cols=77 Identities=16% Similarity=-0.004 Sum_probs=52.5
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce---EEEEecc-cccceeeEEEEEecccccccccccCCCCCCc
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV---VVRLWKG-YRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~---ivRmWKG-yRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
+......+..++.+|+++++++....|.|.++|+.++. +++.+++ +.+ .+....-.+ +.
T Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~~~~~~-------------~~ 158 (377)
T 3dwl_C 96 LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS----TILSLDWHP-------------NN 158 (377)
T ss_dssp CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS----CEEEEEECT-------------TS
T ss_pred ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC----CeEEEEEcC-------------CC
Confidence 44556778999999999999999999999999999988 5778877 654 222211111 11
Q ss_pred cEEEEEEcCCCCeEEEeecC
Q 012917 379 CLCLAIHAPRKGIIEVWQMR 398 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~ 398 (453)
. +++.+-.+|.|.||+++
T Consensus 159 ~--~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 159 V--LLAAGCADRKAYVLSAY 176 (377)
T ss_dssp S--EEEEEESSSCEEEEEEC
T ss_pred C--EEEEEeCCCEEEEEEEE
Confidence 1 44667788999999984
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.29 E-value=0.13 Score=49.58 Aligned_cols=88 Identities=8% Similarity=0.058 Sum_probs=55.9
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.+..+...+.+++.+|+|+++|+....| +.++|+.++..+.....- . ...+..... .. +
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~--~~~~~~~~~---------------~~--~ 72 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-H--LSKVRMLHR---------------TN--Y 72 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-C--CCEEEECTT---------------SS--E
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-C--eEEEEEcCC---------------CC--E
Confidence 3566778899999999999988876556 679999888766543211 1 122221100 01 4
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++-.-.++.|.||++++|..+..+....
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~~~~ 101 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIKVDA 101 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEEECCccEEEEEECCCCcEEEEEECCC
Confidence 55666677899999999998888776443
No 116
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.13 Score=48.83 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=57.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
+......+.+++.+|+++++|++...|.|-|+|+.++ ..++.++|+.+ ++....-.+ .. ..
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~----~v~~~~~~~----------~~-~~-- 211 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG----TVWSSDFDK----------TE-GV-- 211 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECC----------SS-SS--
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC----cEEEEEecC----------CC-Ce--
Confidence 4455567889999999999999999999999999876 67888999887 343221111 00 01
Q ss_pred EEEEEcCCCCeEEEeecCC
Q 012917 381 CLAIHAPRKGIIEVWQMRT 399 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~ 399 (453)
.+++-+..+|.|.||+++.
T Consensus 212 ~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CEEEEEETTSCEEEEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC
Confidence 2445677889999998754
No 117
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.17 E-value=0.14 Score=50.44 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=54.8
Q ss_pred ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCceEEEE--ecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917 303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQALVVVRL--WKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~~ivRm--WKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
..-..+.+.+|+.+| +++++|+.+..|.|.|+|+.++....+ .+|+.++ |....=. |. +..
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~----V~~l~f~----------p~--~~~ 178 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----ITGLKFN----------PL--NTN 178 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC----CCEEEEC----------SS--CTT
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC----EEEEEEe----------CC--CCC
Confidence 334457899999999 568999999999999999987765444 4566652 2111100 00 111
Q ss_pred EEEEEEcCCCCeEEEeecCCC
Q 012917 380 LCLAIHAPRKGIIEVWQMRTG 400 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G 400 (453)
+++-+..+|.|.||+++++
T Consensus 179 --~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 179 --QFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp --EEEEECSSSCEEEEETTSC
T ss_pred --EEEEEeCCCEEEEeeccCC
Confidence 3467788999999999754
No 118
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.17 Score=56.32 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=60.2
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
....+.+++.+|+++++|+....|.|.|+|..++..+...++ ...+.-+... +. . +++-
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~--~~~V~~l~fs-------------pg----~--~L~S 74 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLED--RSAIKEMRFV-------------KG----I--YLVV 74 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSS--CCCEEEEEEE-------------TT----T--EEEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC--CCCEEEEEEc-------------CC----C--EEEE
Confidence 456689999999999999999999999999999887776553 2222222221 11 1 3455
Q ss_pred cCCCCeEEEeecCCCCeEEEEE
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~ 407 (453)
+-.+|.|.||++++|..+..+.
T Consensus 75 ~s~D~~v~lWd~~~~~~~~~~~ 96 (902)
T 2oaj_A 75 INAKDTVYVLSLYSQKVLTTVF 96 (902)
T ss_dssp EETTCEEEEEETTTCSEEEEEE
T ss_pred EECcCeEEEEECCCCcEEEEEc
Confidence 6789999999999999887775
No 119
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.01 E-value=0.18 Score=46.47 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=61.7
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
..|......+..++.+|+|+++++....|.|.++|..........+...+........ . + . .
T Consensus 80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-------------~-~- 141 (340)
T 4aow_A 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS--S-D-------------N-R- 141 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--T-T-------------S-S-
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe--e-c-------------C-c-
Confidence 3455666789999999999999999999999999999999999888777644433221 0 0 0 1
Q ss_pred EEEEEcCCCCeEEEeecCCCCe
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPR 402 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~R 402 (453)
+++-+..+|.+.+|+++...+
T Consensus 142 -~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 142 -QIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp -CEEEEETTSCEEEECTTSCEE
T ss_pred -cceeecCCCeEEEEEeCCCce
Confidence 235567788999998875544
No 120
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.075 Score=59.08 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=65.6
Q ss_pred CccccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE-----Eec-ccccceeeEEEEEecccccccccccCC
Q 012917 300 LTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR-----LWK-GYRDASCVFMEMLVNKDAATSSAYYAP 373 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR-----mWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~ 373 (453)
+..|..+.-.+.+|+.||+| ++|+.+..|.|.|+|+.++.++. -|+ |+.+ ||...+=.- ...++
T Consensus 568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~----~V~sv~Fs~-----~~~~~ 637 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA----CVTCIEFVI-----MEYGD 637 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC----CEEEEEEEE-----EECTT
T ss_pred eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc----ceEEEEEEE-----EecCC
Confidence 34466677789999999999 99999999999999999988874 343 5554 443222110 00001
Q ss_pred CCCCccEEEEEEcCCCCeEEEeec---CCCCeEEEEEe
Q 012917 374 VKSDYCLCLAIHAPRKGIIEVWQM---RTGPRLLTIQC 408 (453)
Q Consensus 374 ~k~~~~l~LvIyaprRg~lEVW~~---~~G~RV~a~~v 408 (453)
...+ . -.++-+..+|.|.+|++ ++|..++.+.-
T Consensus 638 Dg~~-~-~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 638 DGYS-S-ILMVCGTDMGEVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp SSSE-E-EEEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred CCCc-c-eEEEEEecCCcEEEEEEecCCCCcEEEEecC
Confidence 1000 1 24466788999999999 89998877753
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=94.81 E-value=0.2 Score=49.47 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCccccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceE-------EEEecccccceeeEEEEEecccccccccc
Q 012917 299 PLTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVV-------VRLWKGYRDASCVFMEMLVNKDAATSSAY 370 (453)
Q Consensus 299 pl~~l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~i-------vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~ 370 (453)
++..+..+...+..|+.+|+++ ++++++..|.|.|+|+.++.. .+.++++... +.-+.. .+
T Consensus 173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~---~p------- 241 (430)
T 2xyi_A 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV-VEDVAW---HL------- 241 (430)
T ss_dssp CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSC-EEEEEE---CS-------
T ss_pred CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCC-EeeeEE---eC-------
Confidence 3445667777899999999988 999999999999999998321 4566665542 111111 00
Q ss_pred cCCCCCCccEEEEEEcCCCCeEEEeecCCC---CeEEEEEe
Q 012917 371 YAPVKSDYCLCLAIHAPRKGIIEVWQMRTG---PRLLTIQC 408 (453)
Q Consensus 371 ~~~~k~~~~l~LvIyaprRg~lEVW~~~~G---~RV~a~~v 408 (453)
. +.. +++-+-..|.|.||+++++ ..+..+..
T Consensus 242 ---~--~~~--~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 242 ---L--HES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp ---S--CTT--EEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred ---C--CCC--EEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 0 111 3445667899999999987 34445443
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.47 E-value=0.57 Score=48.89 Aligned_cols=82 Identities=16% Similarity=-0.033 Sum_probs=56.7
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEc--CCceEEEEecccccceeeEEEEEec-c-cccccccccCCCCCCccEEEEEE
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDT--QALVVVRLWKGYRDASCVFMEMLVN-K-DAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~--~~~~ivRmWKGyRdAqc~Wi~~~~~-~-~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
...+.+||+|+++++++..|.|.+||+ .++.+++..+.-.+. .-+.+..- . + .. +|++-
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p--~~va~sp~~~~d-------------g~--~l~v~ 243 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA--RSVESSKFKGYE-------------DR--YTIAG 243 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE--EEEEECCSTTCT-------------TT--EEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc--ceEEeCCCcCCC-------------CC--EEEEE
Confidence 567889999999999888899999999 899998887754331 11111100 0 1 11 23333
Q ss_pred cCCCCeEEEeecCCCCeEEEEEe
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v 408 (453)
.-..+.|.||+.+++..+..+.+
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~ 266 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVST 266 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEEC
T ss_pred EccCCeEEEEeccccccceeecc
Confidence 33468899999999988888775
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=94.44 E-value=0.2 Score=52.34 Aligned_cols=107 Identities=15% Similarity=0.295 Sum_probs=67.9
Q ss_pred ECCCCCEEEEEcCCCcEEEEEcCCceEEEEec-ccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEE
Q 012917 315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIE 393 (453)
Q Consensus 315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lE 393 (453)
++|++++.++....|.|.+||..++.+++.++ |+. . +.-.... + .. +|++- -+.|.|.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~-~~v~~sp-d--------------g~-~l~v~-~~d~~V~ 203 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---V-HISRMSA-S--------------GR-YLLVI-GRDARID 203 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---E-EEEEECT-T--------------SC-EEEEE-ETTSEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---c-ceEEECC-C--------------CC-EEEEE-CCCCeEE
Confidence 78999888888778999999999999999999 765 2 2221211 1 11 23222 3459999
Q ss_pred Eeec--CCCCeEEEEEecCCeEEe--cc----ccccCccCCCCCCcCcEEEEEeCCCCce
Q 012917 394 VWQM--RTGPRLLTIQCAKGSKIL--QP----TYRFGSSMASSPYVPLEVFLLNGDSGQL 445 (453)
Q Consensus 394 VW~~--~~G~RV~a~~v~~~~~Ll--~~----~~~~~g~~~~~~~~~~~~~lld~~~g~l 445 (453)
+|++ .++..+..+.++.+-+=+ .+ .-+..- ...+.+.++.++|..++++
T Consensus 204 v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~---v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 204 MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI---AGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEE---EEEEESSEEEEEETTTCCE
T ss_pred EEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEE---EEEccCCeEEEEecccccc
Confidence 9999 889888888866543222 11 111000 1114456777777766654
No 124
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=94.43 E-value=0.078 Score=54.41 Aligned_cols=119 Identities=18% Similarity=0.102 Sum_probs=71.4
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEecccccc--eee-EEEEEecccccccccccCCCCCC
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDA--SCV-FMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWKGyRdA--qc~-Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
|.+.......++.||||+++|.+|..| +|.++|+.++... +..++... ... |-... ..-. .+
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~s---pd 256 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW---------LGYL---PD 256 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE---------EEEC---TT
T ss_pred eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc---------eeEc---CC
Confidence 444455668899999999988888888 9999999999887 76665321 011 00000 0000 12
Q ss_pred ccEEEEEEcCCCCeEEEeecCCCCeE-------EEEEecCCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEE
Q 012917 378 YCLCLAIHAPRKGIIEVWQMRTGPRL-------LTIQCAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVL 448 (453)
Q Consensus 378 ~~l~LvIyaprRg~lEVW~~~~G~RV-------~a~~v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i 448 (453)
. .+++.+-++|.+.||.+ |..+ ..+... +++++... ++.-.|.+++++|.+ |.++.+
T Consensus 257 g--~~~~~~~~~g~~~l~~~--g~~~~~~~~~v~~~~~s-dg~~l~~~--------s~~~~p~~l~~~d~~-~~~~~l 320 (582)
T 3o4h_A 257 G--RLAVVARREGRSAVFID--GERVEAPQGNHGRVVLW-RGKLVTSH--------TSLSTPPRIVSLPSG-EPLLEG 320 (582)
T ss_dssp S--CEEEEEEETTEEEEEET--TEEECCCSSEEEEEEEE-TTEEEEEE--------EETTEEEEEEEETTC-CEEECC
T ss_pred C--cEEEEEEcCCcEEEEEE--CCeeccCCCceEEEEec-CCEEEEEE--------cCCCCCCeEEEEcCC-CceEEE
Confidence 2 35566677899999998 5433 333333 33433221 223456788888874 355443
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.37 E-value=0.76 Score=45.57 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=35.5
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCC---CcEEEEEcCCceEEEEecccc
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSL---GRILLLDTQALVVVRLWKGYR 349 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDsl---GRV~LiD~~~~~ivRmWKGyR 349 (453)
.|.........++.||+|+++|.+... .+|.++|+.++...++ .++.
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~~~~ 222 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP 222 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCS
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-ecCC
Confidence 355555678899999999888776544 4999999999988764 4443
No 126
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.32 E-value=0.54 Score=43.73 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCcEEEEEcCCce----EEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917 319 GSLAAITDSLGRILLLDTQALV----VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 394 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~~----ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV 394 (453)
++++|+....|.|.|+|+.++. .++.++|+.+ ||....-.+. . ... .+++-+..+|.|.|
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~---------~-~~~--~~las~s~D~~v~i 233 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPT---------V-LLR--SYMASVSQDRTCII 233 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCC---------C-SSS--EEEEEEETTSCEEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCC---------C-CCc--eEEEEEECCCcEEE
Confidence 6788998899999999998876 7778899987 5543322110 0 001 24567888999999
Q ss_pred eecCCCC
Q 012917 395 WQMRTGP 401 (453)
Q Consensus 395 W~~~~G~ 401 (453)
|+++++.
T Consensus 234 Wd~~~~~ 240 (297)
T 2pm7_B 234 WTQDNEQ 240 (297)
T ss_dssp EEESSTT
T ss_pred EEeCCCC
Confidence 9998753
No 127
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.21 E-value=1.9 Score=39.33 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=23.0
Q ss_pred eeEEEECCCCCEEEEEc-CCCcEEEEEcCC
Q 012917 310 GERLTLSPSGSLAAITD-SLGRILLLDTQA 338 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~ 338 (453)
...++.+|+|+++++++ ..|+|.++|+..
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 34699999998766654 789999999943
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.18 E-value=0.49 Score=49.62 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=36.2
Q ss_pred CCeeeEEEECCCCCEEEEEcC-CC-----cEEEEEcCCceEEEEecccc
Q 012917 307 PRKGERLTLSPSGSLAAITDS-LG-----RILLLDTQALVVVRLWKGYR 349 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDs-lG-----RV~LiD~~~~~ivRmWKGyR 349 (453)
.+....++.||+|+++|.+.. .| .|.++|+.++...++..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~ 84 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKV 84 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGG
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhh
Confidence 456789999999998887665 77 99999999999999887654
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.07 E-value=0.36 Score=42.74 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-ceEEEEecccc
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQA-LVVVRLWKGYR 349 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-~~ivRmWKGyR 349 (453)
+.........++.+|+|+++|++. .|.|.++|+.+ +...++.++..
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence 334456788999999999888865 68999999999 99998887764
No 130
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.01 E-value=0.38 Score=46.75 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=58.9
Q ss_pred eeeeccCcceeeeeecc---eEEEEeecCCCCCc-eeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEEEe-cC
Q 012917 34 NLLCALDMHTIALANRY---QTVIINWADPEGLV-AKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLVYD-LK 108 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~---~~v~~~w~~~~~~~-~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrfyt-e~ 108 (453)
.++.+|++..++.+-.. .+.+..|+...... ..-...+.. ....|+++.+= ||-..||+|..+|.|++|+ ++
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~S--pdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVD--MKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEEC--TTSCEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEEC--CCCCceEEEcCCCEEEEEECCC
Confidence 35667888887776433 34444554332111 111122222 23557776553 6888999999999999999 56
Q ss_pred CcEeee-cccCccceeEEEE
Q 012917 109 GDLVHR-QLIHPGRILKLRV 127 (453)
Q Consensus 109 G~LL~s-Q~lh~~pV~~ik~ 127 (453)
|.++.. ..-|..+|..|.+
T Consensus 301 ~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEE
T ss_pred CcEEEEecCcccCCEEEEEE
Confidence 888776 3579999999996
No 131
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.37 Score=52.11 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=59.6
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce-------EEEEecccccceeeEEEEEecccccccccccCCCCCCccE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALV-------VVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~-------ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
|.+.+++.||+|++.|++...|.|-|+|+.++. .++.++++...+-.||....-.+ + .
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-------------d-g- 194 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-------------D-V- 194 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------------T-E-
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-------------C-c-
Confidence 457799999999999999999999999999995 58898666544445887654321 2 2
Q ss_pred EEEEEcCCCCeEEEeecCCCC
Q 012917 381 CLAIHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~ 401 (453)
++-+..++.+.+|+++.+.
T Consensus 195 --Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp --EEEEETTCCEEEECCCSSS
T ss_pred --EEEEeCCCeEEEEECCCCc
Confidence 3446669999999998766
No 132
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=93.89 E-value=0.51 Score=44.71 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=53.0
Q ss_pred EEECCCCCEEEE-EcCCC--cEEEEEcCCceEEEEecccccce--eeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 313 LTLSPSGSLAAI-TDSLG--RILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 313 i~lsP~~~laa~-tDslG--RV~LiD~~~~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
.+.||+|+++|. ++..| +|.++|+.++.+.++-.|..+.. ..|- + + .. .++|+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s----p-d--------------g~--~l~~~~ 99 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS----P-D--------------DD--ALFYVK 99 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC----T-T--------------SS--EEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc----C-C--------------CC--EEEEEe
Confidence 678999986666 45467 59999999999999998876543 2221 1 1 11 234555
Q ss_pred CCCeEEEeecCCCCeEEEEEecC
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.++.|-+|++.+|........+.
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~ 122 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPA 122 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCT
T ss_pred CCCeEEEEECCCCcceeeeechh
Confidence 66789999999988765554443
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.89 E-value=0.44 Score=44.09 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=51.4
Q ss_pred CCeeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE-EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 307 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQALVV-VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i-vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
.+.. .++++|+|+++.+++ ..++|.++|+.++.+ ++..........+ +.. .. +.. +|+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~--s~--------------dg~-~l~~ 100 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD-VDI--TP--------------DDQ-FAVT 100 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC-EEE--CT--------------TSS-EEEE
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc-eEE--CC--------------CCC-EEEE
Confidence 3445 899999998666654 488999999999987 6666554332110 111 00 111 2332
Q ss_pred EcCCCC--eEEEeecCCCCeEEEEEec
Q 012917 385 HAPRKG--IIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 385 yaprRg--~lEVW~~~~G~RV~a~~v~ 409 (453)
.....+ .|.+|++.+|..+..+..+
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~ 127 (331)
T 3u4y_A 101 VTGLNHPFNMQSYSFLKNKFISTIPIP 127 (331)
T ss_dssp CCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred ecCCCCcccEEEEECCCCCeEEEEECC
Confidence 222222 8999999888877766543
No 134
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.88 E-value=0.38 Score=47.44 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=60.7
Q ss_pred ccCCCCeeeEEEECC-CCCEEEEEcCCCcEEEEEcCCc---eEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 303 LKDHPRKGERLTLSP-SGSLAAITDSLGRILLLDTQAL---VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 303 l~D~~R~~~~i~lsP-~~~laa~tDslGRV~LiD~~~~---~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
+......+..|+.+| ++.++|+....|.|.++|+.++ ..+...+++... +....-.+ . ..
T Consensus 227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----v~~i~~~p----------~-~~- 290 (430)
T 2xyi_A 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE----VNCLSFNP----------Y-SE- 290 (430)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC----EEEEEECS----------S-CT-
T ss_pred ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC----eEEEEeCC----------C-CC-
Confidence 444556789999999 6789999999999999999987 566666666542 22211111 0 01
Q ss_pred cEEEEEEcCCCCeEEEeecCC-CCeEEEEEec
Q 012917 379 CLCLAIHAPRKGIIEVWQMRT-GPRLLTIQCA 409 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~-G~RV~a~~v~ 409 (453)
++++-+-.+|.|.||++++ +..+..+..+
T Consensus 291 --~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 291 --FILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp --TEEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred --CEEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 2445566789999999998 4556666543
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.82 E-value=0.52 Score=44.26 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred CeeeEEEECCCCCEEEEEc--CCCcEEEEEcCCceE
Q 012917 308 RKGERLTLSPSGSLAAITD--SLGRILLLDTQALVV 341 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tD--slGRV~LiD~~~~~i 341 (453)
.....+++||+|+++++.+ .-|+|.++|+.++..
T Consensus 40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~ 75 (347)
T 3hfq_A 40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTA 75 (347)
T ss_dssp SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEE
T ss_pred CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcE
Confidence 3445699999999665553 369999999987764
No 136
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=93.74 E-value=1.3 Score=41.74 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=24.6
Q ss_pred eeeEEEECCCCCEEEEEcC-CCcEEEEEcCCc
Q 012917 309 KGERLTLSPSGSLAAITDS-LGRILLLDTQAL 339 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~ 339 (453)
+...++++|+|++++++|. .++|.++|+...
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 4677999999997777765 688999987643
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.65 E-value=1.2 Score=41.02 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=47.8
Q ss_pred eeEEEECCCCCEEEEEc-CCCcEEEEEcCCceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 310 GERLTLSPSGSLAAITD-SLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
...++++|+|+++.+++ ..++|.++|+.++.. ++.+.+-.. ..-+.+ .| +.. +|++-
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~--~~~~~~-------------sp---dg~-~l~v~ 238 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL--PGTIVV-------------SR---DGS-TVYVL 238 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC--CCCEEE-------------CT---TSS-EEEEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC--CceEEE-------------CC---CCC-EEEEE
Confidence 47889999998666654 578999999999987 665543211 111111 01 111 34444
Q ss_pred cCCCCeEEEeecCCCCe
Q 012917 386 APRKGIIEVWQMRTGPR 402 (453)
Q Consensus 386 aprRg~lEVW~~~~G~R 402 (453)
....+.|.+|++.+|..
T Consensus 239 ~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTL 255 (331)
T ss_dssp CSSEEEEEEEETTTTEE
T ss_pred EcCCCEEEEEECCCCce
Confidence 45678899999998876
No 138
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=93.59 E-value=0.71 Score=46.94 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCeeeEEEECCC----CCEEEEEcCCCcEEEEEcCCceEEEE-ecccccceeeEEEEEeccccc----ccccccCCCC-
Q 012917 306 HPRKGERLTLSPS----GSLAAITDSLGRILLLDTQALVVVRL-WKGYRDASCVFMEMLVNKDAA----TSSAYYAPVK- 375 (453)
Q Consensus 306 ~~R~~~~i~lsP~----~~laa~tDslGRV~LiD~~~~~ivRm-WKGyRdAqc~Wi~~~~~~~~~----~~~~~~~~~k- 375 (453)
+.|.+.+|+.||+ +++.+.+... +-++++.++..+.- ..||-. +|++..-.+.+ +...+.....
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~----~V~~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQ----QVEVMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTC----EEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCC----cEEEEEECCCCceeeeeccCCCceee
Confidence 3478889999999 8888775444 44467777877776 456544 44433321111 0000000000
Q ss_pred -------CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 376 -------SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 376 -------~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
.+. -+++-+..++.|.||++++|+.+.+++-
T Consensus 184 l~fs~~~g~~--~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 184 LTFAEVQGMQ--EALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp EEEEEEETST--TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEeeccCCCC--ceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 011 1456778899999999999999999974
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.52 E-value=1.1 Score=41.90 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=60.9
Q ss_pred eEEEECCCCCEEEEE-cCCCcEEEEEcCC--ceEEE--Eeccccc-----ceeeEEEEEecccccccccccCCCCCCccE
Q 012917 311 ERLTLSPSGSLAAIT-DSLGRILLLDTQA--LVVVR--LWKGYRD-----ASCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 311 ~~i~lsP~~~laa~t-DslGRV~LiD~~~--~~ivR--mWKGyRd-----Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
..++++|+|++++++ ...++|.++|+.. +.... ....... ....-+.. .| +..
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-------------sp---dG~- 252 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRL-------------SH---DGH- 252 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEE-------------CT---TSC-
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEE-------------CC---CCC-
Confidence 469999999966664 5678898988774 54322 2222111 01111111 01 111
Q ss_pred EEEEEcCCCCeEEEeecCC-C--CeEEEEEec---CCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEEec
Q 012917 381 CLAIHAPRKGIIEVWQMRT-G--PRLLTIQCA---KGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~-G--~RV~a~~v~---~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i~~ 450 (453)
+|++-....+.|.||++.. | ..+..+..+ +.+.-+.+.-+.+-.. ...-..-.+|-+|+.+|+|+.+..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEEeccc
Confidence 4444455578999999972 3 444444441 1122222222111100 000112445555998999997765
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.49 E-value=2.1 Score=42.41 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCeeeEEEECCCCCEEE-EE--cCCCcEEEEEcCCceEEEEe
Q 012917 306 HPRKGERLTLSPSGSLAA-IT--DSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa-~t--DslGRV~LiD~~~~~ivRmW 345 (453)
.......++.+|+|+++| +. |...+|.++|+.++...++-
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~ 263 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 263 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCc
Confidence 344678999999998766 44 33456999999999876554
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=93.46 E-value=0.94 Score=40.03 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=63.3
Q ss_pred eeEEEECCCCCEEE-EEcCCC--cEEEEEcCCceEEEEecccccc-eeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 310 GERLTLSPSGSLAA-ITDSLG--RILLLDTQALVVVRLWKGYRDA-SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 310 ~~~i~lsP~~~laa-~tDslG--RV~LiD~~~~~ivRmWKGyRdA-qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
...++.+|+|++++ +.+..| +|..+|+.++...++...-... .+.|- .+ .. +|++-
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s-----~d-------------g~--~l~~~ 190 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYS-----PD-------------GR--WIYFN 190 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEEC-----TT-------------SS--EEEEE
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceEC-----CC-------------CC--EEEEE
Confidence 56789999998776 455556 5666667778776665433221 11110 01 01 34555
Q ss_pred cCCCCeEEEeecC-CCCeEEEEE----------ecCCeEEeccccccCccCCCCCCcCcEEEEEeCCCCceEEEe
Q 012917 386 APRKGIIEVWQMR-TGPRLLTIQ----------CAKGSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 386 aprRg~lEVW~~~-~G~RV~a~~----------v~~~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
+.+.+.++||.+. .+..+..+. ..+.++.|.....-.+......+...+++++|..+|.++.+.
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 5567888888876 454444333 222222111111110000000123478999999888876554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.15 E-value=0.95 Score=41.43 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=48.7
Q ss_pred CCeeeEEEECCCCCEEEEEc-CCCcEEEEEcC----CceEEEEecccccc-eeeEEEEEecccccccccccCCCCCCccE
Q 012917 307 PRKGERLTLSPSGSLAAITD-SLGRILLLDTQ----ALVVVRLWKGYRDA-SCVFMEMLVNKDAATSSAYYAPVKSDYCL 380 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~----~~~ivRmWKGyRdA-qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l 380 (453)
.+....|+.+|+|+++++++ ..|+|.++|+. +...+......... .++|- + +..
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s----------------~---dg~- 289 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD----------------H---SGK- 289 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC----------------T---TSS-
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEEC----------------C---CCC-
Confidence 35667899999998777655 68999999998 34444444332211 11110 0 111
Q ss_pred EEEEEcCCCCeEEEeec--CCC--CeEEEEEe
Q 012917 381 CLAIHAPRKGIIEVWQM--RTG--PRLLTIQC 408 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~--~~G--~RV~a~~v 408 (453)
+|++-....|.|.||++ ++| .++..+.+
T Consensus 290 ~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 290 YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp EEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEEecCCCCeEEEEEEcCCCceeeEcccccc
Confidence 45555556799999954 455 34444443
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.12 E-value=0.41 Score=44.20 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=54.9
Q ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeE
Q 012917 313 LTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGII 392 (453)
Q Consensus 313 i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~l 392 (453)
+++++++++.++....|.|.++|+.++.+++.++.-..-...-+.+. . +.. ++++-....+.|
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s--~--------------dg~-~~~v~~~~~~~i 67 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA--P--------------DNR-TAYVLNNHYGDI 67 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC--T--------------TSS-EEEEEETTTTEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEEC--C--------------CCC-EEEEEeCCCCcE
Confidence 45778888888888889999999999999988875431011111111 0 111 344555678999
Q ss_pred EEeecCCCCeEEEEEec
Q 012917 393 EVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 393 EVW~~~~G~RV~a~~v~ 409 (453)
.+|++.+|..+..+..+
T Consensus 68 ~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLS 84 (349)
T ss_dssp EEEETTTTEEEEEEESC
T ss_pred EEEeCCCCcEEEEEEcc
Confidence 99999999888777753
No 144
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=92.66 E-value=3.3 Score=39.67 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=29.5
Q ss_pred CCeeeEEEECCCCCEEEEEcC-CCcEEEEEcC-CceEE
Q 012917 307 PRKGERLTLSPSGSLAAITDS-LGRILLLDTQ-ALVVV 342 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~-~~~iv 342 (453)
......++++|+|++++++|. .++|.++|+. +|.+.
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 356788999999998888875 5799999998 77654
No 145
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=92.59 E-value=1.6 Score=41.16 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=66.5
Q ss_pred CCeeeEEEECC-CCCEEEEEcC------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917 307 PRKGERLTLSP-SGSLAAITDS------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 307 ~R~~~~i~lsP-~~~laa~tDs------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
......+..|| +|+++|.+.. ..+|.++|+..+.+.++..+.....+.-.. ..+ + + ..
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~sp-d----------g---~~ 251 (388)
T 3pe7_A 187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF-WVP-D----------G---SA 251 (388)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE-ECT-T----------S---SC
T ss_pred CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce-ECC-C----------C---CE
Confidence 34567899999 9977666433 349999999988877776544221111111 111 1 1 12
Q ss_pred EEEEEEcCCC--CeEEEeecCCCCeEEEEEecC--------CeEEeccccccCccCCC-----CCCcCcEEEEEeCCCCc
Q 012917 380 LCLAIHAPRK--GIIEVWQMRTGPRLLTIQCAK--------GSKILQPTYRFGSSMAS-----SPYVPLEVFLLNGDSGQ 444 (453)
Q Consensus 380 l~LvIyaprR--g~lEVW~~~~G~RV~a~~v~~--------~~~Ll~~~~~~~g~~~~-----~~~~~~~~~lld~~~g~ 444 (453)
+.++-+.... +.|-+|++.+|.+..-...+. .+..+.+.-+.+-.... +.....+++++|.++|+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 2222222222 248999999987433222111 11111111111110000 01234689999999998
Q ss_pred eEEEec
Q 012917 445 LSVLNR 450 (453)
Q Consensus 445 l~~i~~ 450 (453)
++.+..
T Consensus 332 ~~~l~~ 337 (388)
T 3pe7_A 332 QHRVAR 337 (388)
T ss_dssp EEEEEE
T ss_pred eEEecc
Confidence 887653
No 146
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.93 Score=49.00 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=47.5
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc----ceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD----ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd----Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
..+..++-||+|++.|++++.|.|.|+|..+ .+...+ .-. .++.=+.. +|. .+ +|
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf-------------SPD-G~---~L- 144 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW-------------NPI-ES---SI- 144 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE-------------CSS-SS---CE-
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE-------------cCC-CC---EE-
Confidence 5689999999999999999999999999655 333333 110 01111111 111 11 23
Q ss_pred EEcCCCCeEEEeecCCCC
Q 012917 384 IHAPRKGIIEVWQMRTGP 401 (453)
Q Consensus 384 IyaprRg~lEVW~~~~G~ 401 (453)
.-+..+|.|+||+++.|.
T Consensus 145 Asgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp EEEETTSEEEEEECCCCT
T ss_pred EEEcCCCEEEEEECCCCc
Confidence 345779999999999874
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=91.94 E-value=0.65 Score=46.81 Aligned_cols=84 Identities=19% Similarity=0.073 Sum_probs=55.9
Q ss_pred ccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 303 LKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
+..+...+..|+.+|+ ++++|++...|.|.++|+.++..+...+|+++. +....=.+ +.. +
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~----v~~v~wsp-------------dg~-~ 206 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA----VTSVCWSP-------------KGK-Q 206 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC----EEEEEECT-------------TSS-C
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc----eeEEEEcC-------------CCC-E
Confidence 3344567899999997 789999889999999999999777666666542 21111111 011 2
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
|+ -+-.+|.|.||+++ |.....+
T Consensus 207 la-sgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 207 LA-VGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp EE-EEETTSCEEEECTT-CCEEEEE
T ss_pred EE-EEcCCCcEEEEccC-Ccccccc
Confidence 33 34578999999998 5444433
No 148
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=91.84 E-value=4.6 Score=38.99 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=73.5
Q ss_pred cccCCCCe-eeEEEECCCCCEEEEEc--CCCcEEEEEcCCceEEEEec---ccccceeeEEEEEecccccccccccCCCC
Q 012917 302 CLKDHPRK-GERLTLSPSGSLAAITD--SLGRILLLDTQALVVVRLWK---GYRDASCVFMEMLVNKDAATSSAYYAPVK 375 (453)
Q Consensus 302 ~l~D~~R~-~~~i~lsP~~~laa~tD--slGRV~LiD~~~~~ivRmWK---GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k 375 (453)
.++-.++. -+-|.++|+++|.+++- .-++|..+|+.++.+++-.. +++-..+.+. .
T Consensus 14 ~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-----g------------- 75 (266)
T 2iwa_A 14 EFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-----N------------- 75 (266)
T ss_dssp EEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-----T-------------
T ss_pred EEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-----C-------------
Confidence 34444443 47788999987777763 35799999999999999754 3333222221 0
Q ss_pred CCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec-C-CeEEeccccccCccCCCCCCcCcEEEEEeCCCCc
Q 012917 376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA-K-GSKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQ 444 (453)
Q Consensus 376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~-~-~~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~ 444 (453)
+ . |.+-.-+.+.+.|++..++..+..|.++ + |.-|-+.+.++.-+ . ..+.+.+||+.+.+
T Consensus 76 -~-~--lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs---~--gs~~l~viD~~t~~ 137 (266)
T 2iwa_A 76 -E-K--LYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS---D--GTSILYEIDPHTFK 137 (266)
T ss_dssp -T-E--EEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEE---C--SSSEEEEECTTTCC
T ss_pred -C-E--EEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEE---C--CCCeEEEEECCCCc
Confidence 1 2 4455667899999999999999999886 3 22233222222111 1 14677788776644
No 149
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.76 E-value=0.44 Score=46.59 Aligned_cols=86 Identities=7% Similarity=-0.009 Sum_probs=58.3
Q ss_pred ccCCCCeeeEEEECC--------CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCC
Q 012917 303 LKDHPRKGERLTLSP--------SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPV 374 (453)
Q Consensus 303 l~D~~R~~~~i~lsP--------~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~ 374 (453)
+.-+...+.+|+.+| +++++|..-..+.|.|+|+.++..+...+++++.-.. +.. .+.
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~-v~~-~p~------------ 197 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGIS-VQF-RPS------------ 197 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEE-EEE-ETT------------
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEE-EEE-CCC------------
Confidence 445566788999988 7899999888999999999887766666666663211 111 010
Q ss_pred CCCccEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
+. .+++-+..+|.|.||+++++......
T Consensus 198 --~~--~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 198 --NP--NQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp --EE--EEEEEEETTSEEEEEETTCCC-----
T ss_pred --CC--ceEEecCCCCEEEEEECCCCcccccc
Confidence 11 35567888999999999998765443
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=91.73 E-value=0.34 Score=48.84 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=54.7
Q ss_pred CCeeeEEEECCCCCEEE----EEcCCCcEEEEEcCCc-----------eEEEEecccccceeeEEEEEeccccccccccc
Q 012917 307 PRKGERLTLSPSGSLAA----ITDSLGRILLLDTQAL-----------VVVRLWKGYRDASCVFMEMLVNKDAATSSAYY 371 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa----~tDslGRV~LiD~~~~-----------~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~ 371 (453)
+..+.+++.+|+|+++| .....|.|.++|+.++ ..+++++|+.+. +....-.+
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~v~~~p-------- 159 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM----VIDMKWNP-------- 159 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS----EEEEEECS--------
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc----eEEEEECC--------
Confidence 45689999999999888 4567899999999876 136777777652 21111111
Q ss_pred CCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEE
Q 012917 372 APVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLT 405 (453)
Q Consensus 372 ~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a 405 (453)
. ... +++-+..+|.|.||+++++..+..
T Consensus 160 --~--~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 160 --T--VPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp --S--CTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred --C--CCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 0 011 334566799999999998865543
No 151
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.49 E-value=1.5 Score=42.83 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=51.9
Q ss_pred CCCCeeeEEEECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccc---cccccCCC------
Q 012917 305 DHPRKGERLTLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAAT---SSAYYAPV------ 374 (453)
Q Consensus 305 D~~R~~~~i~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~---~~~~~~~~------ 374 (453)
.....+.+++.+|++ +++++.+..|.|.|+|+.++....--.+..+....|........... ...+....
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 334557789999987 58888999999999999999988877777777766765544322110 00010000
Q ss_pred CCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 375 KSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 375 k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
..+.. .++-+...+.+.||+++.++....+..+
T Consensus 264 ~~dg~--~l~s~s~d~~i~vwd~~~~~~~~~l~~~ 296 (393)
T 4gq1_A 264 GSDGS--GILAMCKSGAWLRWNLFANNDYNEISDS 296 (393)
T ss_dssp TTTTC--EEEEECTTSEEEEEEC------------
T ss_pred cCCCC--EEEEEeCCCCEEEEECccCCCCceEeee
Confidence 01111 3455677899999999998877666543
No 152
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=91.44 E-value=0.82 Score=47.28 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCeeeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEecccccce-eeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 307 PRKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDAS-CVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWKGyRdAq-c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
......+..+|+|++++++|..| +|.++|+.++...++..+..+.. ..|.. . . ....-.+ +.. ++
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~----~--~-~~~~~~~---~~~--~~ 308 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP----G--M-RWFAPLA---NGL--IA 308 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST----T--C-CSEEECT---TSC--EE
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc----c--C-ceEeEeC---CCE--EE
Confidence 35567889999999988888778 89999998888888776544321 11110 0 0 0000000 111 33
Q ss_pred EEcCCCCeEEEeecCC-CCeEEEEEecCCeEEeccccccCccC----CCCCCcCcEEEEEeCCCCceEEEe
Q 012917 384 IHAPRKGIIEVWQMRT-GPRLLTIQCAKGSKILQPTYRFGSSM----ASSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 384 IyaprRg~lEVW~~~~-G~RV~a~~v~~~~~Ll~~~~~~~g~~----~~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
+.+-+ |..+||.+.. +.++..+..+.+.. ..-..+.+.. .++.-.+.+++.+|.++|+++.+.
T Consensus 309 ~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESGELVDAAGPWTEW--AATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEBS-SSCEEEEEETTTTEEEECCSSCCEE--EEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEc-CccEEEEEECCCCcEEEecCCCCeE--EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 44445 8899994432 33455544333211 1000111100 022345678999999889888774
No 153
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.63 Score=48.61 Aligned_cols=87 Identities=8% Similarity=-0.091 Sum_probs=60.2
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCc-eEEEEecccccceeeEEEEEe--cccccccccccCCCCCCc
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQAL-VVVRLWKGYRDASCVFMEMLV--NKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~-~ivRmWKGyRdAqc~Wi~~~~--~~~~~~~~~~~~~~k~~~ 378 (453)
.|.-....+.+++.+|++ .+|+....|.|.|+|+.++ ..+..++|+.+ .|.... -.+ +.
T Consensus 261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~----~V~sv~~~~s~-------------~g 322 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS----YILSVSTAYSD-------------FE 322 (524)
T ss_dssp EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSS----CEEEEEEECCT-------------TS
T ss_pred EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccc----cEEEEEEEcCC-------------CC
Confidence 344455678889999876 5677778899999999987 45566888876 343321 111 10
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
. .+++-+..+|.|.||+++++..+..+.
T Consensus 323 ~-~~laS~S~D~tvklWD~~~~~~~~~~~ 350 (524)
T 2j04_B 323 D-TVVSTVAVDGYFYIFNPKDIATTKTTV 350 (524)
T ss_dssp C-CEEEEEETTSEEEEECGGGHHHHCEEE
T ss_pred C-eEEEEeccCCeEEEEECCCCCcccccc
Confidence 0 256788999999999999887665554
No 154
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=90.81 E-value=1.2 Score=43.46 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=53.0
Q ss_pred EEECCCCCEEEEEcC-----------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 313 LTLSPSGSLAAITDS-----------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 313 i~lsP~~~laa~tDs-----------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
++++|+++.+-++.. -++|.+||+.++.+++-+++-. ..-|.+. . + .. +
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~s-p-d--------------g~-~ 318 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTID-Q-Q--------------RN-L 318 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEE-T-T--------------TT-E
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEEC-C-C--------------CC-E
Confidence 678998766655532 3589999999999999998776 2223221 1 1 11 3
Q ss_pred EEEEcCCCCeEEEeecCCC--CeEEEE-EecCC
Q 012917 382 LAIHAPRKGIIEVWQMRTG--PRLLTI-QCAKG 411 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G--~RV~a~-~v~~~ 411 (453)
| |+..++.|-||++++| +.+..+ .++++
T Consensus 319 l--~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~ 349 (361)
T 2oiz_A 319 M--LTLDGGNVNVYDISQPEPKLLRTIEGAAEA 349 (361)
T ss_dssp E--EEECSSCEEEEECSSSSCEEEEEETTSCSS
T ss_pred E--EEeCCCeEEEEECCCCcceeeEEeccCCCC
Confidence 3 3333499999999999 888886 55554
No 155
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=90.77 E-value=7.9 Score=36.51 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=49.7
Q ss_pred eeeEEEECC-CCCEEEEEc--CCCcEEEEEcCCceEEEEeccccc------ceeeEEEEEecccccccccccCCCCCCcc
Q 012917 309 KGERLTLSP-SGSLAAITD--SLGRILLLDTQALVVVRLWKGYRD------ASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 309 ~~~~i~lsP-~~~laa~tD--slGRV~LiD~~~~~ivRmWKGyRd------Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
.-..|+++| +|++.+ +| .-+||.++| ..|..++.+.+.-+ +++.+..-..-.+ . ..
T Consensus 144 ~P~~ia~~~~~g~lyv-~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~----------~--~g- 208 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFV-SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP----------H--LD- 208 (329)
T ss_dssp SEEEEEECTTTCCEEE-EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET----------T--TT-
T ss_pred CCcEEEEeCCCCeEEE-EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC----------C--CC-
Confidence 456899999 666554 45 479999999 67888887753322 2333322111110 0 01
Q ss_pred EEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
.|.|=....+.|.+|+..+|..+..+.
T Consensus 209 -~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 209 -QLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp -EEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred -EEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 244555566788888887776666553
No 156
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=90.59 E-value=2.2 Score=43.55 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=57.0
Q ss_pred EECCCCCEEEEEcC-----CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE-EEcC
Q 012917 314 TLSPSGSLAAITDS-----LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA-IHAP 387 (453)
Q Consensus 314 ~lsP~~~laa~tDs-----lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv-Iyap 387 (453)
...|+++++-++|. .|+|.+||+.++.+++..+.=+.. . +-+. .+ ...+|.. -|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~-va~s--pD-------------G~~lyVan~~~~ 100 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--N-PVVA--DD-------------GSFIAHASTVFS 100 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--E-EEEC--TT-------------SSCEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--c-EEEC--CC-------------CCEEEEEccccc
Confidence 45688988888887 589999999999999999854444 2 3221 11 1233332 1333
Q ss_pred ------CCCeEEEeecCCCCeEEEEEecCCe
Q 012917 388 ------RKGIIEVWQMRTGPRLLTIQCAKGS 412 (453)
Q Consensus 388 ------rRg~lEVW~~~~G~RV~a~~v~~~~ 412 (453)
+.+.|.|||+.++.-+..+.++.|.
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 2468999999999999999987643
No 157
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=90.54 E-value=6.1 Score=37.56 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=67.8
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccc----eeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA----SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdA----qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
.....|+++|+|++.++.-..|+|.++|+.++.+++.++.-+.+ +-.-+.+ . ...+|
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~---------------~~~ly-- 144 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y---------------GKYVY-- 144 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E---------------TTEEE--
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E---------------CCEEE--
Confidence 45678899999965444426799999999999999876532210 1001111 0 11223
Q ss_pred EEcC-CCCeEEEeecCCCCeEEEEEecCC--eEEecc-ccccCccCC---CCCCc--CcEEEEEeCCCCceE
Q 012917 384 IHAP-RKGIIEVWQMRTGPRLLTIQCAKG--SKILQP-TYRFGSSMA---SSPYV--PLEVFLLNGDSGQLS 446 (453)
Q Consensus 384 Iyap-rRg~lEVW~~~~G~RV~a~~v~~~--~~Ll~~-~~~~~g~~~---~~~~~--~~~~~lld~~~g~l~ 446 (453)
+-.. ..+.|-++++.++..+..+.++.. +..+.+ +.-+.++.. ..+|. ...++.||+.++++.
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 2233 467899999999888887776532 111111 111111100 01111 267888888878765
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.39 E-value=2.4 Score=44.07 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=31.4
Q ss_pred CeeeEEEECCCCCEEEEEc---------------------------------CCCcEEEEEcCCceEEEEecc
Q 012917 308 RKGERLTLSPSGSLAAITD---------------------------------SLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tD---------------------------------slGRV~LiD~~~~~ivRmWKG 347 (453)
.....++.||+|+++|.+. ..++|.++|+.++...++..+
T Consensus 181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 3456788999998877763 457899999999998877644
No 159
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.17 E-value=1.9 Score=44.85 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=32.7
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCC-----ceEEEEeccccc
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQA-----LVVVRLWKGYRD 350 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~-----~~ivRmWKGyRd 350 (453)
.....++.||+|+++|.+. .+.|.++|+.+ +...++..+-..
T Consensus 121 ~~~~~~~~SpdG~~la~~~-~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVR-NHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TCCTTCEECTTSSEEEEEE-TTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred ccccCCcCCCCCCEEEEEE-CCeEEEEecCcccccCCCcEEeccCCCC
Confidence 3456688999998877763 38999999999 988887665443
No 160
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=89.21 E-value=0.21 Score=52.16 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=34.2
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
..+++.+|+|++++. +..|.|.++|+.++...++..+...
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~ 58 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI 58 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccc
Confidence 567788999998765 7789999999999999999988764
No 161
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=88.87 E-value=1.1 Score=50.01 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=39.5
Q ss_pred CCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 305 DHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
........++.||+|+++|.+...++|.++|+.++.+.++.+++..
T Consensus 376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 3445678899999999999998999999999999999999877544
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.86 E-value=4 Score=38.25 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCCeeeEEEECC-CCC-EEEEEcCC-----CcEEEEEcCCceEEEEec
Q 012917 306 HPRKGERLTLSP-SGS-LAAITDSL-----GRILLLDTQALVVVRLWK 346 (453)
Q Consensus 306 ~~R~~~~i~lsP-~~~-laa~tDsl-----GRV~LiD~~~~~ivRmWK 346 (453)
..+....+..+| +++ ++.+++.- .+|.++|+..+.+.++..
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 186 DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence 445667889999 776 55555432 589999998887666655
No 163
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=88.64 E-value=2.6 Score=43.86 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=30.6
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG 347 (453)
...++.||+|+++|.+.. +.|.++|+.++...++-.+
T Consensus 116 ~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 116 LQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp CSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred ccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 567889999976666544 8999999999999998775
No 164
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.58 E-value=9.2 Score=35.86 Aligned_cols=39 Identities=3% Similarity=-0.107 Sum_probs=31.9
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
+..++.++|+|++.+. .-++|..+|. +|.++.-++.-++
T Consensus 38 ~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 38 ECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTT
T ss_pred CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCC
Confidence 4578899999998883 3578999999 8999999987543
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=88.38 E-value=3.1 Score=42.88 Aligned_cols=44 Identities=20% Similarity=0.033 Sum_probs=32.0
Q ss_pred CCCCeeeEEEECCCCCEEEEEc--C------CCcEEEEEcC-Cc---eEEEEeccc
Q 012917 305 DHPRKGERLTLSPSGSLAAITD--S------LGRILLLDTQ-AL---VVVRLWKGY 348 (453)
Q Consensus 305 D~~R~~~~i~lsP~~~laa~tD--s------lGRV~LiD~~-~~---~ivRmWKGy 348 (453)
+.......+..||||+++|.+. . ..+|.++|+. +| ...++..+.
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 3345667789999998877643 2 2489999999 67 777777654
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=88.38 E-value=12 Score=35.20 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.5
Q ss_pred CeeeEEEECCCCCEEEEEcCC------------------------CcEEEEEcCCceEEEEec
Q 012917 308 RKGERLTLSPSGSLAAITDSL------------------------GRILLLDTQALVVVRLWK 346 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDsl------------------------GRV~LiD~~~~~ivRmWK 346 (453)
.....|+++|+|++.++.... |+|+++|..++.+++.|.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 86 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG 86 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC
Confidence 457889999999988654333 479999999999998775
No 167
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=88.16 E-value=1.4 Score=44.86 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=47.4
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCe
Q 012917 312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGI 391 (453)
Q Consensus 312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~ 391 (453)
.+..+.++.++|+....|.|-|+|+.+|..++..+|+.+.-+.-+.. .+ + .. +++-+-.+|.
T Consensus 288 ~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf-SP-D--------------G~--~LaSGS~D~T 349 (356)
T 2w18_A 288 FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW-SG-T--------------DS--HLLAGQKDGN 349 (356)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE-CS-S--------------SS--EEEEECTTSC
T ss_pred eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE-CC-C--------------CC--EEEEEECCCc
Confidence 34445557788988888999999999999999999998743222211 11 1 11 3457889999
Q ss_pred EEEeec
Q 012917 392 IEVWQM 397 (453)
Q Consensus 392 lEVW~~ 397 (453)
|.||++
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=88.13 E-value=16 Score=33.71 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=35.7
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW 345 (453)
.+.+.....+.++.+|+|++.++.-..|+|.++|..++.+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 46666667789999999997776656789999999999887765
No 169
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=88.01 E-value=5.6 Score=37.34 Aligned_cols=116 Identities=11% Similarity=-0.048 Sum_probs=64.0
Q ss_pred eeeEEEECCCCCEEEEE-cCCCcEEEEEcCCceEEEEeccccc--ceeeEEEEEecccccccccccCCCCCCccEEEEEE
Q 012917 309 KGERLTLSPSGSLAAIT-DSLGRILLLDTQALVVVRLWKGYRD--ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIH 385 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~t-DslGRV~LiD~~~~~ivRmWKGyRd--Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIy 385 (453)
+..++...|+|+++++. +.-+||+.+|. .|.+++-|+--.+ .+..+... .. +. .+.. +||.
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~----------v~--~~-~~G~-~lv~- 141 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ----------IN--KN-KKGN-YLVP- 141 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC----------CE--EC-TTSC-EEEE-
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC----------ce--EC-CCCC-EEEE-
Confidence 45678899999887774 43899999996 7888877752111 00000000 00 00 0111 3333
Q ss_pred cCCCCeEEEeecCCCCeEEEEEecCC---eEEeccccccCccCCCCCCcCcEEEEEeCCCCceE
Q 012917 386 APRKGIIEVWQMRTGPRLLTIQCAKG---SKILQPTYRFGSSMASSPYVPLEVFLLNGDSGQLS 446 (453)
Q Consensus 386 aprRg~lEVW~~~~G~RV~a~~v~~~---~~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~ 446 (453)
.-..|.|-+|+.+ |+.+-.+..+.. .-.+..+..+.. .....+++.||+++|++.
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~-----~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA-----CGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEE-----CBTTSEEEEECTTTCCEE
T ss_pred ecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEE-----eCCCCeEEEEeCcCCcEE
Confidence 3357888899987 998888876421 111111111111 122357888888778764
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=87.03 E-value=7.1 Score=36.15 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.2
Q ss_pred eeeEEEECCCCCEEEEE-cC----CCcEEEEEcCCceEEEEeccc
Q 012917 309 KGERLTLSPSGSLAAIT-DS----LGRILLLDTQALVVVRLWKGY 348 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~t-Ds----lGRV~LiD~~~~~ivRmWKGy 348 (453)
....+..||+|+++|.+ +. -.+|.++|+.++...++..+-
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~ 104 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK 104 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC
Confidence 45678999999877664 32 235999999999988887653
No 171
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.97 E-value=4.9 Score=42.73 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=35.6
Q ss_pred CeeeEEEECCCCCEEEE-EcCCC----cEEEEEcCCceEEEE-ecccccceeeEE
Q 012917 308 RKGERLTLSPSGSLAAI-TDSLG----RILLLDTQALVVVRL-WKGYRDASCVFM 356 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~-tDslG----RV~LiD~~~~~ivRm-WKGyRdAqc~Wi 356 (453)
.....+++||||+++|. .|.-| .|.++|+.+|..++. .++.+.....|.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws 183 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL 183 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe
Confidence 45677899999987776 56666 489999999998763 444444455564
No 172
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=86.75 E-value=1.6 Score=45.59 Aligned_cols=84 Identities=7% Similarity=0.014 Sum_probs=58.1
Q ss_pred ccCCCCeeeEE--EECCCC-CEEEEEcCCCcEEEEEcCCceEEEEecccc-cc---eeeEEEEEecccccccccccCCCC
Q 012917 303 LKDHPRKGERL--TLSPSG-SLAAITDSLGRILLLDTQALVVVRLWKGYR-DA---SCVFMEMLVNKDAATSSAYYAPVK 375 (453)
Q Consensus 303 l~D~~R~~~~i--~lsP~~-~laa~tDslGRV~LiD~~~~~ivRmWKGyR-dA---qc~Wi~~~~~~~~~~~~~~~~~~k 375 (453)
+.-+...+.+| .-+|+| +++|++...|.|-|+|+.++..++...|+- +. .++|-.
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp------------------ 365 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP------------------ 365 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET------------------
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC------------------
Confidence 44455667788 457888 899999999999999999988877777653 21 233321
Q ss_pred CCccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 376 SDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 376 ~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
+.. .++-+-..+.|.+|+++++..+.++.
T Consensus 366 -~~~--~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 366 -QIY--SYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp -TTT--EEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred -CcC--eEEEeCCCCcEEEEECcccccceeee
Confidence 011 23456678899999999988655544
No 173
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=86.73 E-value=5.7 Score=41.45 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=47.2
Q ss_pred eeEEEECCCCCEEEEEcCCC---------------------------------cEEEEEcCC-ceEEEEeccc-cc---c
Q 012917 310 GERLTLSPSGSLAAITDSLG---------------------------------RILLLDTQA-LVVVRLWKGY-RD---A 351 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslG---------------------------------RV~LiD~~~-~~ivRmWKGy-Rd---A 351 (453)
...+..||||+++|.+...+ +|.++|+.+ +...++-.+. .+ .
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 290 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA 290 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE
T ss_pred ccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE
Confidence 35789999998777653222 889999999 8887776541 11 2
Q ss_pred eeeEEEEEecccccccccccCCCCCCccEEEEEEc----CCCCeEEEeecCCCCeEEEEE
Q 012917 352 SCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA----PRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 352 qc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya----prRg~lEVW~~~~G~RV~a~~ 407 (453)
.+.| . ++ + +|++-. ..++.|.+|++.+|.....+.
T Consensus 291 ~~~~-p---Dg--------------~---~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 291 RVNW-R---DP--------------Q---HLSFQRQSRDQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp EEEE-E---ET--------------T---EEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred EEEe-C---CC--------------C---EEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence 2333 2 11 1 233222 235678889988887655544
No 174
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=86.58 E-value=4.1 Score=43.01 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=28.0
Q ss_pred CeeeEEEECCCCCEEEE-EcCCC----cEEEEEcCCceEE
Q 012917 308 RKGERLTLSPSGSLAAI-TDSLG----RILLLDTQALVVV 342 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~-tDslG----RV~LiD~~~~~iv 342 (453)
.....+..||+|+++|. .|.-| .|.++|+.+|..+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence 35778999999988776 45444 6999999999876
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=86.21 E-value=15 Score=33.54 Aligned_cols=46 Identities=13% Similarity=-0.066 Sum_probs=36.0
Q ss_pred CccccCCCCeeeEEEECCCCC-EEEEEcCCCcEEEEEcCCceEEEEecc
Q 012917 300 LTCLKDHPRKGERLTLSPSGS-LAAITDSLGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 300 l~~l~D~~R~~~~i~lsP~~~-laa~tDslGRV~LiD~~~~~ivRmWKG 347 (453)
+..+.+...-.+.++.+|+|+ +.++.-..|+|..+|..++ ++.|+.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~ 66 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH 66 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC
Confidence 344667778899999999998 6666556789999999988 666654
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=85.50 E-value=17 Score=38.30 Aligned_cols=85 Identities=15% Similarity=-0.047 Sum_probs=54.8
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcC--CceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQ--ALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~--~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
...+.+||+|+++.+++..|.|.+||+. ++.+++-.+.-.+.. =+.+ .. . +....+.+|..=|.
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~--~ia~--s~------~---~~pDGk~l~v~n~~- 264 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--SIET--SK------M---EGWEDKYAIAGAYW- 264 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--EEEE--CC------S---TTCTTTEEEEEEEE-
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc--eeEE--cc------c---cCCCCCEEEEEEcc-
Confidence 4579999999999998889999999996 888776555322211 0111 00 0 00001233444444
Q ss_pred CCCeEEEeecCCCCeEEEEEec
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~ 409 (453)
.+.|-|++..++..+..+.++
T Consensus 265 -~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 265 -PPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp -TTEEEEEETTTCCEEEEEECC
T ss_pred -CCeEEEEECCCCcEEEEEecc
Confidence 488899999999888888764
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=85.16 E-value=20 Score=33.86 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=53.6
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
..+.|+++ ++++.+++..-|+|.++|..++.+++.+++-.+ ..-+.+..+ . .|.+-...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~--p~~i~~~~~----------------g--~lyv~~~~ 103 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTS--PRYIHFLSD----------------E--KAYVTQIW 103 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSS--EEEEEEEET----------------T--EEEEEEBS
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCC--CcEEEEeCC----------------C--eEEEEECC
Confidence 34567775 455666666679999999999999988764322 222222111 1 23344445
Q ss_pred CCeEEEeecCCCCeEEEEEecC
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~ 410 (453)
.+.|-+|+..++..+..+.++.
T Consensus 104 ~~~v~~iD~~t~~~~~~i~~g~ 125 (328)
T 3dsm_A 104 DYRIFIINPKTYEITGYIECPD 125 (328)
T ss_dssp CSEEEEEETTTTEEEEEEECTT
T ss_pred CCeEEEEECCCCeEEEEEEcCC
Confidence 7899999999998888888766
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=84.38 E-value=13 Score=33.82 Aligned_cols=81 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CeeeEEEECCCCCEEEEEcC-CCcEEEEEcC-CceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 308 RKGERLTLSPSGSLAAITDS-LGRILLLDTQ-ALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~-~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
.....|+++|+|++. ++|+ -++|.++|+. .|.+ .+.+ ........-+.+ . .+..++.
T Consensus 172 ~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~--d--------------~~G~l~v 233 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRV--D--------------AGGLIWA 233 (296)
T ss_dssp SSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEE--B--------------TTSCEEE
T ss_pred CCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEE--C--------------CCCCEEE
Confidence 445679999999988 7665 5799999997 5655 4444 111100000100 0 0112222
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCC
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
. . .+.|-+|+.+ |..+..+..+.+
T Consensus 234 ~--~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 234 S--A--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp E--E--TTEEEEECTT-SCEEEEEECSSC
T ss_pred E--c--CCeEEEECCC-CCEEEEEECCCC
Confidence 2 2 6778888886 888777776543
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=83.91 E-value=7.9 Score=40.92 Aligned_cols=108 Identities=10% Similarity=0.213 Sum_probs=65.1
Q ss_pred ECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEE
Q 012917 315 LSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEV 394 (453)
Q Consensus 315 lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEV 394 (453)
.+|.+.++++.-..|+|.+||+.++.+++..+.-...+ .+.+ ..+ .. +|.+ +-+.|.|-+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~--~v~~--SpD--------------Gr-~lyv-~~~dg~V~v 222 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH--ISRL--SAS--------------GR-YLFV-IGRDGKVNM 222 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE--EEEE--CTT--------------SC-EEEE-EETTSEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc--ceEE--CCC--------------CC-EEEE-EcCCCeEEE
Confidence 45666666666778999999999999998775322211 2221 111 11 2222 236899999
Q ss_pred eecC--CCCeEEEEEecCCeEEeccc------cccCccCCCCCCcCcEEEEEeCCCCce
Q 012917 395 WQMR--TGPRLLTIQCAKGSKILQPT------YRFGSSMASSPYVPLEVFLLNGDSGQL 445 (453)
Q Consensus 395 W~~~--~G~RV~a~~v~~~~~Ll~~~------~~~~g~~~~~~~~~~~~~lld~~~g~l 445 (453)
|++. ++..+..+.++.+-+=+.-+ -+..= ...+.+.++.+||..++++
T Consensus 223 iD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~---v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 223 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI---AGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE---EEEEETTEEEEEETTTCCE
T ss_pred EECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEE---EEEccCCeEEEEECCCCcE
Confidence 9995 88888888877654322111 00000 1125578888888766554
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=83.83 E-value=12 Score=39.57 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=29.3
Q ss_pred eeeEEEECCCCCEEEEE-cCCC----cEEEEEcCCceEEEE
Q 012917 309 KGERLTLSPSGSLAAIT-DSLG----RILLLDTQALVVVRL 344 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~t-DslG----RV~LiD~~~~~ivRm 344 (453)
....++.||+|+++|.+ |.-| .|.++|+.+|..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~ 166 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD 166 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc
Confidence 46789999999887764 5555 799999999998874
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=83.79 E-value=23 Score=31.46 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=30.4
Q ss_pred CCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344 (453)
Q Consensus 306 ~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm 344 (453)
.......|+.+|+|++.+++..-|+|..+|.. +.+.+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~ 50 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY 50 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe
Confidence 33567889999999988887778999999998 665543
No 182
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=83.49 E-value=1.4 Score=46.18 Aligned_cols=38 Identities=5% Similarity=-0.076 Sum_probs=31.7
Q ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 312 RLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 312 ~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
.+.-+|+|++++.+ ..|.|.++|+.++...++..+...
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~ 57 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTM 57 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHH
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccc
Confidence 56788999877655 579999999999999999887654
No 183
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=83.22 E-value=18 Score=34.81 Aligned_cols=118 Identities=11% Similarity=-0.018 Sum_probs=76.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcC
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAP 387 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyap 387 (453)
-.++.++++ ++++.+++-.-++|.++|..++.+++..+ |- ..-+|--.... ..|| +--
T Consensus 66 ~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~-~g-~~~g~glt~Dg----------------~~l~--vs~- 123 (266)
T 2iwa_A 66 YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFT-HQ-MKDGWGLATDG----------------KILY--GSD- 123 (266)
T ss_dssp CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEE-CC-SSSCCEEEECS----------------SSEE--EEC-
T ss_pred cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEE-CC-CCCeEEEEECC----------------CEEE--EEC-
Confidence 455667776 35788888888999999999999999875 11 22345433211 1223 333
Q ss_pred CCCeEEEeecCCCCeEEEEEecCCeEEecc-cc-ccCccCC--CCCCcCcEEEEEeCCCCceE-EE
Q 012917 388 RKGIIEVWQMRTGPRLLTIQCAKGSKILQP-TY-RFGSSMA--SSPYVPLEVFLLNGDSGQLS-VL 448 (453)
Q Consensus 388 rRg~lEVW~~~~G~RV~a~~v~~~~~Ll~~-~~-~~~g~~~--~~~~~~~~~~lld~~~g~l~-~i 448 (453)
-.+.|-+.+..+...+..+.|+.+.+-+.. +. -+.. +. ..-+..+++..||+.+|++. .|
T Consensus 124 gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d-g~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 124 GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN-GEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-TEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC-CEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 478999999999999999999876443211 10 0000 00 11255789999999999763 44
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=83.21 E-value=4.9 Score=37.63 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=50.8
Q ss_pred eeEEEECCCCCEEEEE-cC--CCcEEEEEcCCceEEEEecccccce--eeEEEEEecccccccccccCCCCCCccEEEEE
Q 012917 310 GERLTLSPSGSLAAIT-DS--LGRILLLDTQALVVVRLWKGYRDAS--CVFMEMLVNKDAATSSAYYAPVKSDYCLCLAI 384 (453)
Q Consensus 310 ~~~i~lsP~~~laa~t-Ds--lGRV~LiD~~~~~ivRmWKGyRdAq--c~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvI 384 (453)
...+++||+|+++|.+ +. ..+|.++|+.++...++-.+..... +.|- | +.. .++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s----------------p---dg~--~l~ 96 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS----------------T---DER--AFF 96 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC----------------T---TSS--EEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC----------------C---CCC--EEE
Confidence 3456899999886664 43 3479999999999877765543211 2221 0 111 234
Q ss_pred EcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 385 HAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 385 yaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
|.-.++.|-+|++.+|........+.
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~ 122 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDE 122 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCT
T ss_pred EEEcCCcEEEEECCCCCcEEEEeccc
Confidence 55566789999999887665555443
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=82.79 E-value=5.3 Score=40.62 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=53.0
Q ss_pred EEEECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEec-c--ccccee----eEEEEEecccccccccccCCC
Q 012917 312 RLTLSPSGSLAAITDS----------LGRILLLDTQALVVVRLWK-G--YRDASC----VFMEMLVNKDAATSSAYYAPV 374 (453)
Q Consensus 312 ~i~lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWK-G--yRdAqc----~Wi~~~~~~~~~~~~~~~~~~ 374 (453)
.|.+||+|+++.++++ -+.|.+||+.++.+++-+. | -| ++. .-+.+ .
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r-~~~g~~P~~~a~-------------s-- 145 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-FLVGTYPWMTSL-------------T-- 145 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGEEE-------------C--
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc-cccCCCCceEEE-------------c--
Confidence 4999999998888774 3569999999999998763 1 11 110 00110 0
Q ss_pred CCCccEEEEEEcC-CCCeEEEeecCCCCeEEEEEec
Q 012917 375 KSDYCLCLAIHAP-RKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 375 k~~~~l~LvIyap-rRg~lEVW~~~~G~RV~a~~v~ 409 (453)
.+.. +|.+..- ..+.|-|+++.++..+..+.++
T Consensus 146 -pDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 146 -PDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp -TTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred -CCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 0111 3444443 3689999999999999998764
No 186
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.06 E-value=5.1 Score=38.30 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=26.9
Q ss_pred eeeEEE-ECCCCCEEEEEcCCC------cEEEEEcC-CceEEE
Q 012917 309 KGERLT-LSPSGSLAAITDSLG------RILLLDTQ-ALVVVR 343 (453)
Q Consensus 309 ~~~~i~-lsP~~~laa~tDslG------RV~LiD~~-~~~ivR 343 (453)
....++ +||+|+++++++..+ +|.++|+. +|.+.+
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 567899 999999887775433 89999986 676554
No 187
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=81.70 E-value=9.1 Score=37.75 Aligned_cols=86 Identities=8% Similarity=0.031 Sum_probs=55.2
Q ss_pred eEEEECCCCCEEEE-EcC---------CCcEEEEEcCCceEEEEecccc-cceeeEEEEEecccccccccccCCCCCCcc
Q 012917 311 ERLTLSPSGSLAAI-TDS---------LGRILLLDTQALVVVRLWKGYR-DASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 311 ~~i~lsP~~~laa~-tDs---------lGRV~LiD~~~~~ivRmWKGyR-dAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
.-+.++|+++.+-+ .++ -++|.+||+.++.+++-++.=. -..++|- . +..
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s----~---------------Dg~ 330 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVA----Q---------------DGG 330 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEEC----C---------------CCC
Confidence 34778998764444 332 3689999999999999876422 2222221 1 111
Q ss_pred EEEEEEcCCCCeEEEeecCCCCeEEE-EEecCCeEEe
Q 012917 380 LCLAIHAPRKGIIEVWQMRTGPRLLT-IQCAKGSKIL 415 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G~RV~a-~~v~~~~~Ll 415 (453)
..|++-.-..+.|-|+++.+++.+.. +.++++-..|
T Consensus 331 ~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~ 367 (373)
T 2mad_H 331 PDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred eEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence 12333333469999999999999998 5777764433
No 188
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=81.22 E-value=5.8 Score=41.67 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=28.8
Q ss_pred eeeEEEECCCCCEEEEEcC------CCcEEEEEcCCceEEEEec
Q 012917 309 KGERLTLSPSGSLAAITDS------LGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDs------lGRV~LiD~~~~~ivRmWK 346 (453)
.-..+.++|+| +.+.+.. -|+|+++|..++.+++-|+
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~ 181 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWE 181 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc
Confidence 34567888998 5554333 2899999999999999998
No 189
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=80.82 E-value=33 Score=33.35 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=77.0
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
-++-|++.. +++-.++=.-+++.++|..++.+++-.+- .. -+|=-+... . .|++-. .
T Consensus 97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~--~~-eGwGLt~Dg----------------~--~L~vSd-G 153 (268)
T 3nok_A 97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRY--SG-EGWGLCYWN----------------G--KLVRSD-G 153 (268)
T ss_dssp CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEEC--SS-CCCCEEEET----------------T--EEEEEC-S
T ss_pred ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeC--CC-ceeEEecCC----------------C--EEEEEC-C
Confidence 356677664 46666676779999999999999998863 11 144333211 1 244555 4
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEEec-------cccccCccCCCCCCcCcEEEEEeCCCCceE-EEe
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKGSKILQ-------PTYRFGSSMASSPYVPLEVFLLNGDSGQLS-VLN 449 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~-------~~~~~~g~~~~~~~~~~~~~lld~~~g~l~-~i~ 449 (453)
.+.|-++|.+++..+..+.|+.+++-+. ....+..+ -|..+.+..|||.+|++. .|+
T Consensus 154 s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyan----vw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 154 GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYAN----IWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE----ETTCSEEEEECTTTCBEEEEEE
T ss_pred CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEE----ECCCCeEEEEeCCCCcEEEEEE
Confidence 8899999999999999999987554332 11122211 277889999999999874 443
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=80.27 E-value=21 Score=35.15 Aligned_cols=78 Identities=17% Similarity=0.070 Sum_probs=49.0
Q ss_pred EECCCCCEEEEEcC--CC---cEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc--
Q 012917 314 TLSPSGSLAAITDS--LG---RILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA-- 386 (453)
Q Consensus 314 ~lsP~~~laa~tDs--lG---RV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya-- 386 (453)
..+|+++++-++|. .+ .|.+||..++.++...+.=....+++- |. .+.+|..=..
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~s----------------pD--g~~lyv~n~~~~ 88 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAA----------------HS--GSEFALASTSFS 88 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEEC----------------CC--CCEEEEEecccc
Confidence 44577888888885 44 899999999999876653211111111 11 1222322111
Q ss_pred -----CCCCeEEEeecCCCCeEEEEEec
Q 012917 387 -----PRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 387 -----prRg~lEVW~~~~G~RV~a~~v~ 409 (453)
.+.+.|.+|+..++..+..+.++
T Consensus 89 ~~~rg~~~~~v~viD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 89 RIAKGKRTDYVEVFDPVTFLPIADIELP 116 (373)
T ss_pred ccccCCCCCeEEEEECCCCcEEEEEECC
Confidence 23578999999999988888876
No 191
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=80.09 E-value=21 Score=32.11 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=30.4
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEec
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWK 346 (453)
.....|+++|+|++.++....|+|.++|.. +..++.+.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~ 67 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG 67 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec
Confidence 446789999999987776677999999987 66667664
No 192
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=79.84 E-value=34 Score=33.09 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=71.0
Q ss_pred cccCCCCe-eeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCc
Q 012917 302 CLKDHPRK-GERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDY 378 (453)
Q Consensus 302 ~l~D~~R~-~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~ 378 (453)
.++-.++- .+-|..+ +++|-..+=..| +|..+|+.+|.+++-.+-=.+ . |-+-... . ..
T Consensus 36 ~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--~-FgeGit~------------~--g~ 97 (262)
T 3nol_A 36 SYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--Y-FGEGISD------------W--KD 97 (262)
T ss_dssp EEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--C-CEEEEEE------------E--TT
T ss_pred EecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--c-ceeEEEE------------e--CC
Confidence 34433333 4667777 678777775545 999999999999987642110 0 1110000 0 11
Q ss_pred cEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCe-EEeccccccCccCCCCCCcCcEEEEEeCCCCce
Q 012917 379 CLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS-KILQPTYRFGSSMASSPYVPLEVFLLNGDSGQL 445 (453)
Q Consensus 379 ~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~-~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l 445 (453)
.+| +-.=+.+.+-|+|.+++..+..|.++..+ -|-..+..+.- +.. ..++.+|||.+.++
T Consensus 98 ~ly--~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~---SdG--s~~i~~iDp~T~~v 158 (262)
T 3nol_A 98 KIV--GLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIM---SDG--TPVLRFLDPESLTP 158 (262)
T ss_dssp EEE--EEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEE---CCS--SSEEEEECTTTCSE
T ss_pred EEE--EEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEE---ECC--CCeEEEEcCCCCeE
Confidence 333 33557899999999999999999986432 22222211111 111 46788888877654
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=79.60 E-value=17 Score=38.63 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.9
Q ss_pred eeeEEEECCCCCEEEE-EcCCCc----EEEEEcCCceEEEE
Q 012917 309 KGERLTLSPSGSLAAI-TDSLGR----ILLLDTQALVVVRL 344 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~-tDslGR----V~LiD~~~~~ivRm 344 (453)
....+..||||+++|. .|.-|. |.++|+.+|..++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~ 204 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD 204 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc
Confidence 5678999999987776 455565 99999999998764
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=79.24 E-value=25 Score=31.74 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=27.9
Q ss_pred eeeEEEECCCCCEEEEEcCC---------------CcEEEEEcCCceEEEEecc
Q 012917 309 KGERLTLSPSGSLAAITDSL---------------GRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDsl---------------GRV~LiD~~~~~ivRmWKG 347 (453)
....|+++|+|++.+++... |+|..+|.. +.+.++..+
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence 35678999999887776443 799999987 766665443
No 195
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=78.16 E-value=3.1 Score=39.90 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=40.4
Q ss_pred ccCCCCeeeEEEECCC-CCEEEEEcCCCcEEEEEcCCceEEEEe--cccccce
Q 012917 303 LKDHPRKGERLTLSPS-GSLAAITDSLGRILLLDTQALVVVRLW--KGYRDAS 352 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~-~~laa~tDslGRV~LiD~~~~~ivRmW--KGyRdAq 352 (453)
|+.......-|+.+|+ ++|.|++|.-++|+-+|+. |.++|-+ .|+.|.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E 73 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE 73 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH
Confidence 4444457889999995 6899999999999999999 8899877 6777755
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=77.35 E-value=16 Score=38.42 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=63.2
Q ss_pred CCCCEEEEEc---CCCcEEEEEcCCceE---EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCC
Q 012917 317 PSGSLAAITD---SLGRILLLDTQALVV---VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKG 390 (453)
Q Consensus 317 P~~~laa~tD---slGRV~LiD~~~~~i---vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg 390 (453)
|+|+++..+| ..++|+++|+.++.. ..+..+.-+..+.++... + + .|++..-++|
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---~-------------~---~lv~~~~~dg 340 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---G-------------G---HLSLEYLKDA 340 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE---T-------------T---EEEEEEEETT
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE---C-------------C---EEEEEEEECC
Confidence 6666666676 468999999988753 334433223333333321 0 1 3556666788
Q ss_pred eEEEeecC-CCCeEEEEEecCCeEEeccccccCcc----CCCCCCcCcEEEEEeCCCCceEEEe
Q 012917 391 IIEVWQMR-TGPRLLTIQCAKGSKILQPTYRFGSS----MASSPYVPLEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 391 ~lEVW~~~-~G~RV~a~~v~~~~~Ll~~~~~~~g~----~~~~~~~~~~~~lld~~~g~l~~i~ 449 (453)
..+||.+. .|..+..+..+..+.+.......-+. ..++.-.|..+|++|.++|.++.+.
T Consensus 341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 88888765 46655555444222222211111110 0022344789999999899887664
No 197
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=77.34 E-value=44 Score=31.85 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=77.7
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
-++.|++. ++++-.++=.-+++.++|..++.+++-.+- - --+|=-+... .. |++-- .
T Consensus 66 fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~--~~Gwglt~dg----------------~~--L~vSd-g 122 (243)
T 3mbr_X 66 FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRY-P--GEGWALTSDD----------------SH--LYMSD-G 122 (243)
T ss_dssp CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEEC-S--SCCCEEEECS----------------SC--EEEEC-S
T ss_pred ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-C--CCceEEeeCC----------------CE--EEEEC-C
Confidence 34555555 467778887789999999999999998873 1 1356443211 12 44544 4
Q ss_pred CCeEEEeecCCCCeEEEEEecCCeEEec-------cccccCccCCCCCCcCcEEEEEeCCCCceE-EEe
Q 012917 389 KGIIEVWQMRTGPRLLTIQCAKGSKILQ-------PTYRFGSSMASSPYVPLEVFLLNGDSGQLS-VLN 449 (453)
Q Consensus 389 Rg~lEVW~~~~G~RV~a~~v~~~~~Ll~-------~~~~~~g~~~~~~~~~~~~~lld~~~g~l~-~i~ 449 (453)
.+.|-++|.+++..+..+.|+.+++-+. ....+..+ -|..+.+..|||.+|++. .|+
T Consensus 123 s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan----vw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 123 TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN----VWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE----ETTTTEEEEECTTTCBEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE----ECCCCeEEEEECCCCCEEEEEE
Confidence 7889999999999999999986544332 12222222 267789999999999874 444
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=76.97 E-value=16 Score=40.67 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=67.1
Q ss_pred eeeEEEECCCCCEEEE-EcCCCcEE-EEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 309 KGERLTLSPSGSLAAI-TDSLGRIL-LLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~-tDslGRV~-LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
....++.+ +|+.++. +| -++|. ++|+.++...++- +.. ..+..+... .+ .. .++++
T Consensus 339 ~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~~-~~~~~~~~S--pD--------------G~--~la~~ 396 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-ENL-GNVFAMGVD--RN--------------GK--FAVVA 396 (1045)
T ss_dssp EEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CCC-CSEEEEEEC--TT--------------SS--EEEEE
T ss_pred eEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CCc-cceeeeEEC--CC--------------CC--EEEEE
Confidence 56677888 8865555 55 78999 9999998877665 432 222222211 11 11 23466
Q ss_pred CCCCeEEEeecCCCCeEEEEEecCCe---EEeccccccCccCC-CC-----CCcCcEEEEEeCCCCceEEEec
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCAKGS---KILQPTYRFGSSMA-SS-----PYVPLEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~~~~---~Ll~~~~~~~g~~~-~~-----~~~~~~~~lld~~~g~l~~i~~ 450 (453)
-.++.|.+|++.+|........+.+. --+.|..+..-... .. ......+++.|.++|++..+..
T Consensus 397 ~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~ 469 (1045)
T 1k32_A 397 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 469 (1045)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred CCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC
Confidence 77899999999998876555332211 11111111110000 00 1234688888888887666543
No 199
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=76.96 E-value=20 Score=38.72 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=75.4
Q ss_pred CeeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceEEEEecc---cccceeeEEEEEecccccccccccCCCC----CCcc
Q 012917 308 RKGERLTLSPSGSLAAITD-SLGRILLLDTQALVVVRLWKG---YRDASCVFMEMLVNKDAATSSAYYAPVK----SDYC 379 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~ivRmWKG---yRdAqc~Wi~~~~~~~~~~~~~~~~~~k----~~~~ 379 (453)
..-..+.+||||+++.++| ...+|.++|+.+...+ .+| +|++-.+=+++ + .+|.. .+..
T Consensus 277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~--~~~~l~~~~~v~~~v~v---G--------~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FYENADPRSAVVAEPEL---G--------LGPLHTAFDGRGN 343 (595)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HHSCCCGGGGEEECCBC---C--------SCEEEEEECTTSE
T ss_pred CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc--cccccCcccceEEEcCC---C--------CCcceEEECCCCe
Confidence 4567799999999999997 5689999999976421 111 22211111100 0 00100 1122
Q ss_pred EEEEEEcCCCCeEEEeecCC----------CCeEEEEEec---------------CCeEEeccccccCccCC--CCCCcC
Q 012917 380 LCLAIHAPRKGIIEVWQMRT----------GPRLLTIQCA---------------KGSKILQPTYRFGSSMA--SSPYVP 432 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~----------G~RV~a~~v~---------------~~~~Ll~~~~~~~g~~~--~~~~~~ 432 (453)
+|+. .=..+.|.+|++.. .+.|..+.++ +.+|-|+...++.-.-. --|.+|
T Consensus 344 aY~t--~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~ 421 (595)
T 1fwx_A 344 AYTS--LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKP 421 (595)
T ss_dssp EEEE--ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCC
T ss_pred EEEE--EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCC
Confidence 2333 33568899999988 7788888885 33455555444432110 113567
Q ss_pred cEEEEEeCCCCceEEEe
Q 012917 433 LEVFLLNGDSGQLSVLN 449 (453)
Q Consensus 433 ~~~~lld~~~g~l~~i~ 449 (453)
.+--|||-++|.++.+-
T Consensus 422 ~~~ql~dis~~~m~lv~ 438 (595)
T 1fwx_A 422 ENDQLIDISGDKMVLVH 438 (595)
T ss_dssp EEEEEEECSSSSCEEEE
T ss_pred CcceEEEcCCCcEEEEE
Confidence 67788998888888774
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=76.51 E-value=41 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=31.6
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 343 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR 343 (453)
++........|+++|+|++.+++..-|+|..+|.. +.+.+
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~ 54 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE 54 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE
Confidence 44445567889999999988887778999999988 66654
No 201
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=76.13 E-value=31 Score=36.24 Aligned_cols=118 Identities=11% Similarity=0.089 Sum_probs=63.3
Q ss_pred EECCCCCEEEE-EcC---CCcEEEEEcCCceE--EEEeccccc-ceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 314 TLSPSGSLAAI-TDS---LGRILLLDTQALVV--VRLWKGYRD-ASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 314 ~lsP~~~laa~-tDs---lGRV~LiD~~~~~i--vRmWKGyRd-Aqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
.++|+|+.+++ ++. .++|+++|+.++.. .+..-..++ ..+..+... + +. .|++..
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-------------~~--~lv~~~ 353 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV---R-------------SN--FLVLCY 353 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE---T-------------TT--EEEEEE
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE---c-------------CC--EEEEEE
Confidence 57888765554 543 45899999988742 222223333 223222221 1 01 244555
Q ss_pred CCCC--eEEEeecCCCCeEEEEEecCCeEEeccccccCc----cCCCCCCcCcEEEEEeCCCCc--eEEEec
Q 012917 387 PRKG--IIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGS----SMASSPYVPLEVFLLNGDSGQ--LSVLNR 450 (453)
Q Consensus 387 prRg--~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g----~~~~~~~~~~~~~lld~~~g~--l~~i~~ 450 (453)
-++| .|.+|++.+|..+..+..+.+. ........-+ ...++.-.|.++|++|..+|+ +..++.
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~-v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGS-VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSE-EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEE
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCce-EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeee
Confidence 5566 4566777778877666655332 1111111111 001334568899999998898 776654
No 202
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=74.91 E-value=30 Score=33.46 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=74.1
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
++-|++. ++++-.++-.-+++.++|..++.+++-.+= - --+|=-+... . .|++-. ..
T Consensus 89 geGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-~--~eG~glt~dg----------------~--~L~~Sd-Gs 145 (262)
T 3nol_A 89 GEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-D--GEGWGLTHND----------------Q--YLIMSD-GT 145 (262)
T ss_dssp EEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEEC-S--SCCCCEEECS----------------S--CEEECC-SS
T ss_pred eeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEEC-C--CCceEEecCC----------------C--EEEEEC-CC
Confidence 4556655 347777787789999999999999998762 1 1233222111 1 244444 36
Q ss_pred CeEEEeecCCCCeEEEEEecCCeEEe-------ccccccCccCCCCCCcCcEEEEEeCCCCceE-EEe
Q 012917 390 GIIEVWQMRTGPRLLTIQCAKGSKIL-------QPTYRFGSSMASSPYVPLEVFLLNGDSGQLS-VLN 449 (453)
Q Consensus 390 g~lEVW~~~~G~RV~a~~v~~~~~Ll-------~~~~~~~g~~~~~~~~~~~~~lld~~~g~l~-~i~ 449 (453)
+.|-++|..++..+..+.|+.+++-+ +....+. ..-|..+.++.|||.+|++. .|+
T Consensus 146 ~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ly----an~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 146 PVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIF----ANVWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp SEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEE----EEETTSSEEEEECTTTCBEEEEEE
T ss_pred CeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEE----EEEccCCeEEEEECCCCcEEEEEE
Confidence 78999999999999999997544332 2111111 11277889999999999875 444
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=74.71 E-value=3.7 Score=39.91 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=32.4
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCc--eEEEEec
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQAL--VVVRLWK 346 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~--~ivRmWK 346 (453)
...|+++|+|+++.++.. |.|.+||+.++ .+++-.+
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~ 344 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE 344 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec
Confidence 889999999999988877 99999999999 9987753
No 204
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=74.71 E-value=3.5 Score=43.09 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=27.8
Q ss_pred eeEEEECCCCCEEEEEcC---------CCcEEEEEcCCceE
Q 012917 310 GERLTLSPSGSLAAITDS---------LGRILLLDTQALVV 341 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDs---------lGRV~LiD~~~~~i 341 (453)
..++..||||+++|.+.+ .|.|.++|+.++..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 678999999998887644 68999999999988
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=74.10 E-value=21 Score=36.51 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=56.8
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCC-----CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCC
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSL-----GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSD 377 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDsl-----GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~ 377 (453)
+++..-... ...|+++.+-+++.. |+|.+||+.++.++...+-=+.- + +-+ ..| .
T Consensus 70 ~~~~~~~~~--~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--g-ia~--SpD-------------g 129 (426)
T 3c75_H 70 EADEPVILE--APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--H-PVA--AED-------------G 129 (426)
T ss_dssp CCCCCCBCC--CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--E-EEE--CTT-------------S
T ss_pred CCccccccc--cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--c-eEE--CCC-------------C
Confidence 444443333 334577777776653 79999999999999988743332 1 221 111 1
Q ss_pred ccEEEEEEcC-------CCCeEEEeecCCCCeEEEEEec
Q 012917 378 YCLCLAIHAP-------RKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 378 ~~l~LvIyap-------rRg~lEVW~~~~G~RV~a~~v~ 409 (453)
..+|..-+.+ +.+.|.|+|..++..+..+.++
T Consensus 130 k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 130 SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence 2445444432 3578999999999999999886
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=73.86 E-value=16 Score=38.90 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=63.5
Q ss_pred ECCCCCEEEE-EcC---CCcEEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 315 LSPSGSLAAI-TDS---LGRILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 315 lsP~~~laa~-tDs---lGRV~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
++|+|+.+++ ++. .++|+++|+.++ ....+..+..+ ...++... + + .|++..-+
T Consensus 323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~---~-------------~---~lv~~~~~ 382 (741)
T 1yr2_A 323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIA---G-------------N---RLFASYIH 382 (741)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEE---B-------------T---EEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEE---C-------------C---EEEEEEEE
Confidence 4587765554 542 578999999884 55566655433 33333221 0 1 35666667
Q ss_pred CCeEEEeecC-CCCeEEEEEecCCeEEeccccccCccC----CCCCCcCcEEEEEeCCCCceEEE
Q 012917 389 KGIIEVWQMR-TGPRLLTIQCAKGSKILQPTYRFGSSM----ASSPYVPLEVFLLNGDSGQLSVL 448 (453)
Q Consensus 389 Rg~lEVW~~~-~G~RV~a~~v~~~~~Ll~~~~~~~g~~----~~~~~~~~~~~lld~~~g~l~~i 448 (453)
+|..+||.+. .|..+..+..+..+.........-+.. .++.-.|.++|++|..+|.++.+
T Consensus 383 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 383 DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 7887777665 466665555432222211111111100 02234578999999988887765
No 207
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=73.86 E-value=6.3 Score=39.46 Aligned_cols=79 Identities=8% Similarity=-0.021 Sum_probs=52.9
Q ss_pred EEECCCCCEEEEEcC---------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEE
Q 012917 313 LTLSPSGSLAAITDS---------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLA 383 (453)
Q Consensus 313 i~lsP~~~laa~tDs---------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~Lv 383 (453)
+.++|+++.+-++.. -+.+.+||+.++.+++-++.=.. .|--.... + ...+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~---p~gi~~s~-D-------------g~~l--- 328 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD---SDAIIAAQ-D-------------GASD--- 328 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE---ECEEEECC-S-------------SSCE---
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC---cceEEECC-C-------------CCEE---
Confidence 789999876666532 24788999999999997754331 11111100 1 1122
Q ss_pred EEcCC--CCeEEEeecCCCCeEEEEEecCC
Q 012917 384 IHAPR--KGIIEVWQMRTGPRLLTIQCAKG 411 (453)
Q Consensus 384 Iyapr--Rg~lEVW~~~~G~RV~a~~v~~~ 411 (453)
.|+.+ .+.|-|+|+++++-+..+.++++
T Consensus 329 ~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred EEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 23443 79999999999999999998875
No 208
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=73.08 E-value=20 Score=36.37 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=20.8
Q ss_pred CeeeEEEECCCCCEEEEEcC-----CCcEEEEEc
Q 012917 308 RKGERLTLSPSGSLAAITDS-----LGRILLLDT 336 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDs-----lGRV~LiD~ 336 (453)
.....+.-||+ ++++++|. .-+|..+|+
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 46677888999 88888775 336777887
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=71.00 E-value=17 Score=36.87 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=54.2
Q ss_pred CeeeeccCcceeeeeecceEEEEeec--------CCCCCceeEeecCCCCCCCcEEEEEEEEeCCcEEEEEeccccEEEE
Q 012917 33 PNLLCALDMHTIALANRYQTVIINWA--------DPEGLVAKIRPELSPIASEYITAIEWLVFEEMRALAVGTSRGYFLV 104 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~~~w~--------~~~~~~~~~~g~l~~~~~e~ITs~~~lp~~dw~~I~VG~ssG~vrf 104 (453)
-.+++|+...+++.|..+.+++.+.. ..++....+.-.+ ++ |+++.+ |-..++|| .+|.|++
T Consensus 41 nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~l---p~--V~~l~f----d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI---PD--VIFVCF----HGDQVLVS-TRNALYS 110 (388)
T ss_dssp BCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC---TT--EEEEEE----ETTEEEEE-ESSEEEE
T ss_pred cEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeC---CC--eeEEEE----CCCEEEEE-cCCcEEE
Confidence 45788999999999999999883321 1111111122222 33 888877 65677778 8899999
Q ss_pred EecC-CcEeeecccCccceeEEE
Q 012917 105 YDLK-GDLVHRQLIHPGRILKLR 126 (453)
Q Consensus 105 yte~-G~LL~sQ~lh~~pV~~ik 126 (453)
|+.. -..--+|..|+.+|..||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~ 133 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLK 133 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEE
T ss_pred EEchhhhccCccceeecceeeEE
Confidence 9843 222234567788887665
No 210
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=70.04 E-value=37 Score=32.99 Aligned_cols=119 Identities=15% Similarity=0.079 Sum_probs=72.7
Q ss_pred ccccCCCCe-eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCcc
Q 012917 301 TCLKDHPRK-GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYC 379 (453)
Q Consensus 301 ~~l~D~~R~-~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~ 379 (453)
..++-.++- .+-|..+ +++|-..+=..|+|..+|+.+|.+++-. .-+.. |-+-... + .+ .
T Consensus 47 ~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~--FgeGit~-~------------g~-~ 107 (268)
T 3nok_A 47 REYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNI--FAEGLAS-D------------GE-R 107 (268)
T ss_dssp EEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTC--CEEEEEE-C------------SS-C
T ss_pred EEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCc--ceeEEEE-e------------CC-E
Confidence 345444444 3667777 4788888878899999999999999876 33221 1111111 0 01 3
Q ss_pred EEEEEEcCCCCeEEEeecCCCCeEEEEEecCCe-EEeccccccCccCCCCCCcCcEEEEEeCCCCce
Q 012917 380 LCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGS-KILQPTYRFGSSMASSPYVPLEVFLLNGDSGQL 445 (453)
Q Consensus 380 l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~-~Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l 445 (453)
|| +-.=+.+.+-|+|.+++..+..|.++..+ -|-..+..+.- +. ...++.+|||.++++
T Consensus 108 Ly--~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~v---Sd--Gs~~l~~iDp~T~~v 167 (268)
T 3nok_A 108 LY--QLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVR---SD--GGTMLTFHEPDGFAL 167 (268)
T ss_dssp EE--EEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEE---EC--SSSEEEEECTTTCCE
T ss_pred EE--EEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEE---EC--CCCEEEEEcCCCCeE
Confidence 34 33557899999999999999999976432 11111111111 11 146788888876654
No 211
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=68.49 E-value=71 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=29.8
Q ss_pred CeeeEEEECCCCCEEEEEcC------CCcEEEEEcCCceEEEEec
Q 012917 308 RKGERLTLSPSGSLAAITDS------LGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDs------lGRV~LiD~~~~~ivRmWK 346 (453)
.....|+++|+|++.+++.. .|+|..+|..++.+.++..
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 179 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec
Confidence 45678999999987776543 5899999998877766544
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=67.93 E-value=11 Score=38.72 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=56.4
Q ss_pred EEEECCCCCEEEEEcC----------CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 312 RLTLSPSGSLAAITDS----------LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 312 ~i~lsP~~~laa~tDs----------lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
-+.++|+++.+-+++. -+.|.+||+.++.+++-|+.=+. .|--.... +....
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~---P~gia~sp---------------Dg~~~ 384 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE---IDSINVSQ---------------DAEPL 384 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---ECEEEECC---------------SSSCE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC---cCeEEEcc---------------CCCEE
Confidence 4789999875555532 35799999999999998853221 11111111 11102
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEE-EecCCeEEec
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTI-QCAKGSKILQ 416 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~-~v~~~~~Ll~ 416 (453)
|++---..|.|-|+|+.+++-+..+ .++++-.++-
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i~ 420 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEELRSVDQLGRGPQIIT 420 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCCSSSCCEEE
T ss_pred EEEEcCCCCeEEEEECCCCCEEEEecCCCCCCcEEE
Confidence 3343334799999999999999997 7887655443
No 213
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=66.68 E-value=24 Score=32.45 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=23.5
Q ss_pred EECCCCCEEEE-EcC-------CCcEEEEEcCCceEEEEeccc
Q 012917 314 TLSPSGSLAAI-TDS-------LGRILLLDTQALVVVRLWKGY 348 (453)
Q Consensus 314 ~lsP~~~laa~-tDs-------lGRV~LiD~~~~~ivRmWKGy 348 (453)
.+||+|++++. ++. .++|.++| ++...++.+++
T Consensus 221 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 221 AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 34999976655 422 36899999 77777777765
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=66.33 E-value=80 Score=33.32 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=61.3
Q ss_pred ECCCC-CEEEEEcC---CCcEEEEEcCCceE--EEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCC
Q 012917 315 LSPSG-SLAAITDS---LGRILLLDTQALVV--VRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPR 388 (453)
Q Consensus 315 lsP~~-~laa~tDs---lGRV~LiD~~~~~i--vRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyapr 388 (453)
++|+| +++..|+. .++|+.+|+.++.. ++..-..++... .+.. . + + +||+..-+
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~--~-------------g-~---~lv~~~~~ 346 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHS--G-------------S-G---YLFAEYMV 346 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEE--E-------------T-T---EEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEE--E-------------C-C---EEEEEEEE
Confidence 56755 56666754 47999999998754 222333333322 1110 1 0 1 34444444
Q ss_pred CC--eEEEeecCCCCeEEEEEecCCeEEeccccccCccC----CCCCCcCcEEEEEeCCCCceEEEec
Q 012917 389 KG--IIEVWQMRTGPRLLTIQCAKGSKILQPTYRFGSSM----ASSPYVPLEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 389 Rg--~lEVW~~~~G~RV~a~~v~~~~~Ll~~~~~~~g~~----~~~~~~~~~~~lld~~~g~l~~i~~ 450 (453)
.| .|.+|++. |.....+..+..+.....+...-+.. .++.-.|.+++.+|..+|.++.+..
T Consensus 347 ~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 347 DATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp TTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred CCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence 44 68888886 55555554443333322222111110 0223457899999998888776643
No 215
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=64.70 E-value=39 Score=30.32 Aligned_cols=38 Identities=3% Similarity=0.084 Sum_probs=28.6
Q ss_pred eeeEEEECCCCCEEEEEcCCC-cEEEEEcCCceEEEEecc
Q 012917 309 KGERLTLSPSGSLAAITDSLG-RILLLDTQALVVVRLWKG 347 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslG-RV~LiD~~~~~ivRmWKG 347 (453)
....|+++|+|++.++....+ +|.++|. ++..++.+.+
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~ 246 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES 246 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc
Confidence 346799999998877765554 9999995 5666676654
No 216
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=64.32 E-value=99 Score=29.33 Aligned_cols=110 Identities=16% Similarity=-0.002 Sum_probs=68.1
Q ss_pred CeeeEEEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEec---ccccceeeEEEEEecccccccccccCCCCCCccEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLG--RILLLDTQALVVVRLWK---GYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCL 382 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmWK---GyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~L 382 (453)
--.+-+..++ ++|-..+=..| +|..+|+.+|.+++-.+ .|.-+-+... ...||
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--------------------~~~ly- 78 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--------------------RDRLI- 78 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--------------------TTEEE-
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--------------------CCEEE-
Confidence 3356677777 67777665544 99999999999998663 1211111110 11333
Q ss_pred EEEcCCCCeEEEeecCCCCeEEEEEecCCeE-EeccccccCccCCCCCCcCcEEEEEeCCCCce
Q 012917 383 AIHAPRKGIIEVWQMRTGPRLLTIQCAKGSK-ILQPTYRFGSSMASSPYVPLEVFLLNGDSGQL 445 (453)
Q Consensus 383 vIyaprRg~lEVW~~~~G~RV~a~~v~~~~~-Ll~~~~~~~g~~~~~~~~~~~~~lld~~~g~l 445 (453)
+-.=+.+.+-|+|.+++..+..|..+..+- |-..+.++.- |. . ..+++++||.+.++
T Consensus 79 -~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~v---Sd-g-s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 79 -QLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYM---SD-G-TAVIRKLDPDTLQQ 136 (243)
T ss_dssp -EEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEE---EC-S-SSEEEEECTTTCCE
T ss_pred -EEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEE---EC-C-CCeEEEEeCCCCeE
Confidence 346778999999999999999999765322 2222211111 11 1 46788888877554
No 217
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=64.22 E-value=26 Score=37.14 Aligned_cols=39 Identities=8% Similarity=-0.118 Sum_probs=33.5
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccccc
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRD 350 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRd 350 (453)
..++.-+|+|++++.. .|.|.|+|+.++....+.+|...
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 57 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF 57 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh
Confidence 4578899999988886 68999999999999888888764
No 218
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=63.54 E-value=6.1 Score=41.43 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=53.9
Q ss_pred CeeeeccCcceeeeeecceEEE--EeecCCCCCc------eeEee-cCCC---CCCCcEEEEEEEEe-CCcEEEEEeccc
Q 012917 33 PNLLCALDMHTIALANRYQTVI--INWADPEGLV------AKIRP-ELSP---IASEYITAIEWLVF-EEMRALAVGTSR 99 (453)
Q Consensus 33 ~~~~~sp~~~~la~A~~~~~v~--~~w~~~~~~~------~~~~g-~l~~---~~~e~ITs~~~lp~-~dw~~I~VG~ss 99 (453)
..+.+||+|++||+.-..-+.| ++|....... +..+- .|++ .....|..+.|=|+ ....|+||=+++
T Consensus 69 ~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 69 FHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 5699999999999887775555 6786544321 11111 1211 12467999999999 445799999999
Q ss_pred cEEEEEecCC
Q 012917 100 GYFLVYDLKG 109 (453)
Q Consensus 100 G~vrfyte~G 109 (453)
+.||+|..+-
T Consensus 149 ~~Ir~yDl~~ 158 (452)
T 3pbp_A 149 DTITMFDILN 158 (452)
T ss_dssp SCEEEEETTC
T ss_pred CEEEEEEccc
Confidence 9999999754
No 219
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=62.41 E-value=82 Score=27.74 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=27.5
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRm 344 (453)
.....|+++|+|++.+++...++|..+|. ++.+.+.
T Consensus 141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 176 (299)
T 2z2n_A 141 SYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF 176 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe
Confidence 45678889999888776666789999998 7766553
No 220
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=61.19 E-value=17 Score=39.03 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=42.5
Q ss_pred CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 329 GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 329 GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
|.|..||+.+|.++-..+..-. |. .+ +-.... -||+++-.+|.|.+|+.++|+.+-.++.
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~----~~-------~g-------~~~tag--glvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI----FN-------GG-------TLSTAG--NLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS----CC-------CC-------EEEETT--TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeEEEEECCCCCeEeEccCCCC----cc-------Cc-------cceECC--CEEEEECCCCcEEEEECCCCccceeeeC
Confidence 8899999999998643332110 10 00 000001 1677788999999999999999999997
Q ss_pred cCC
Q 012917 409 AKG 411 (453)
Q Consensus 409 ~~~ 411 (453)
+.+
T Consensus 515 ~~~ 517 (689)
T 1yiq_A 515 ASG 517 (689)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 221
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=60.87 E-value=6.2 Score=38.58 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=38.8
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeec
Q 012917 318 SGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQM 397 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~ 397 (453)
++..+.++...|.|..+|..+|.++.-.++ +. +. ..|.-.+.. +++-...+|.|-.|+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~----~~-------------s~p~~~~g~--~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP----VL-------------QVPTHVEEP--AFLPDPNDGSLYTLGS 66 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC----SC-------------CCC-----C--CEEECTTTCCEEEC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC----ce-------------ecceEcCCC--EEEEeCCCCEEEEEEC
Confidence 466677777789999999999998855544 10 00 000001111 2333468999999999
Q ss_pred CCCCeEEEEE
Q 012917 398 RTGPRLLTIQ 407 (453)
Q Consensus 398 ~~G~RV~a~~ 407 (453)
++|..+-.++
T Consensus 67 ~tG~~~w~~~ 76 (369)
T 2hz6_A 67 KNNEGLTKLP 76 (369)
T ss_dssp ---CCSEECS
T ss_pred CCCceeeeee
Confidence 9998765543
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=60.04 E-value=19 Score=38.55 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=41.2
Q ss_pred CcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEe
Q 012917 329 GRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQC 408 (453)
Q Consensus 329 GRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v 408 (453)
|.|..||+.+|.++-..+- .... ...+-..... +|++.-..|.|.+|+.++|+.+..|.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-------------~~~~-----~~g~~~~~g~--~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-------------VSPW-----NGGTLTTAGN--VVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-------------SSSC-----CCCEEEETTT--EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEeCCCCcEEeecCC-------------CCCC-----cCcceEeCCC--EEEEECCCCcEEEEECCCCceeeeeeC
Confidence 8999999999987533321 0000 0000000111 455677899999999999999999998
Q ss_pred cCC
Q 012917 409 AKG 411 (453)
Q Consensus 409 ~~~ 411 (453)
+.+
T Consensus 517 ~~~ 519 (677)
T 1kb0_A 517 GTG 519 (677)
T ss_dssp SSC
T ss_pred CCC
Confidence 863
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=59.41 E-value=75 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=24.9
Q ss_pred eeEEEECCCCCEEEEEcC-CCcEEEEEc--CCceE
Q 012917 310 GERLTLSPSGSLAAITDS-LGRILLLDT--QALVV 341 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDs-lGRV~LiD~--~~~~i 341 (453)
...|+++|+|+.+.++|+ -++|..+|+ .+|.+
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 457999999987777765 588999997 56654
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=58.19 E-value=68 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=31.9
Q ss_pred CCeeeEEEECCCCCEEEEEcC------CCcEEEEEcCCceEEEEec
Q 012917 307 PRKGERLTLSPSGSLAAITDS------LGRILLLDTQALVVVRLWK 346 (453)
Q Consensus 307 ~R~~~~i~lsP~~~laa~tDs------lGRV~LiD~~~~~ivRmWK 346 (453)
-.....|+++|+|+|.++ |+ -++|+.+|+.++.+++.+.
T Consensus 66 ~~~p~gv~~d~~g~L~v~-D~g~~~~~~~~i~~~d~~tg~~~~~~~ 110 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWML-DNGNQSKSVPKLVAWDTLNNQLSRVIY 110 (343)
T ss_dssp CSCEEEEEECSSSEEEEE-ECHHHHTSCCEEEEEETTTTEEEEEEE
T ss_pred eeEeeEEEEcCCCcEEEE-cCCCCcCCCCeEEEEECCCCeEEEEEE
Confidence 356789999999986554 54 4799999999999998885
No 225
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=57.12 E-value=15 Score=38.95 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=28.1
Q ss_pred eEEEECCCCCEEEEEcCC---------CcEEEEEcCCceEEEEe
Q 012917 311 ERLTLSPSGSLAAITDSL---------GRILLLDTQALVVVRLW 345 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDsl---------GRV~LiD~~~~~ivRmW 345 (453)
..+.+||||+++|.+-+. |.+.|+|+.++.+.++-
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 468899999988775443 88899999999987753
No 226
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=57.02 E-value=86 Score=31.22 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=27.7
Q ss_pred ccCCCCeeeEEEECCCCCEEEEE------------cCCCcEEEEEcC
Q 012917 303 LKDHPRKGERLTLSPSGSLAAIT------------DSLGRILLLDTQ 337 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~t------------DslGRV~LiD~~ 337 (453)
+++.....|.|.+.|+|.....+ |.-|+|+++|..
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~ 91 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLN 91 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecC
Confidence 55545678999999999777776 689999999987
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=54.72 E-value=18 Score=36.18 Aligned_cols=41 Identities=5% Similarity=-0.040 Sum_probs=33.4
Q ss_pred eeeEEEECCCCCE-EEEEc-CCCcEEEEEcCCceEEEEecccc
Q 012917 309 KGERLTLSPSGSL-AAITD-SLGRILLLDTQALVVVRLWKGYR 349 (453)
Q Consensus 309 ~~~~i~lsP~~~l-aa~tD-slGRV~LiD~~~~~ivRmWKGyR 349 (453)
....|.++|+|+. +++.. .-+.|.+||+.++.+++-.+.-+
T Consensus 315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 5788999999974 44455 57999999999999999887443
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=54.45 E-value=54 Score=30.23 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=29.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW 345 (453)
.....++++|+|++.+++...++|.++|.. +.+..+.
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~ 122 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLV 122 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEE
Confidence 446789999999998888778999999986 6654443
No 229
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=53.00 E-value=1.2e+02 Score=27.18 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=47.8
Q ss_pred CeeeEEEECCCCCEEEEEcC-CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEc
Q 012917 308 RKGERLTLSPSGSLAAITDS-LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHA 386 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDs-lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIya 386 (453)
..-..|+++|+++.+-++|. .+||..+|........+..+-... .+ +.+ + .. .|.+=.
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-~g-i~~----d-------------~~--~lyva~ 225 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FA-VTS----Y-------------GK--NLYYTD 225 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EE-EEE----E-------------TT--EEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-eE-EEE----e-------------CC--EEEEEE
Confidence 34568999998776666665 479999999876544433321110 00 000 0 01 233333
Q ss_pred CCCCeEEEeecCCCCeEEEEEecC
Q 012917 387 PRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 387 prRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
-..+.|.+.+..+|..+..+.+++
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~g~ 249 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHPHK 249 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECCSS
T ss_pred CCCCeEEEEeCCCCCceEEEcccc
Confidence 345677788887787777776554
No 230
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.86 E-value=87 Score=30.91 Aligned_cols=33 Identities=3% Similarity=-0.156 Sum_probs=27.1
Q ss_pred EEECCCCCEEEEEcCCC--cEEEEEcCCceEEEEe
Q 012917 313 LTLSPSGSLAAITDSLG--RILLLDTQALVVVRLW 345 (453)
Q Consensus 313 i~lsP~~~laa~tDslG--RV~LiD~~~~~ivRmW 345 (453)
++++|+++++.++|..| +|..+|...+...+..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 89999999888888766 8999999887665443
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=50.51 E-value=1.6e+02 Score=27.52 Aligned_cols=99 Identities=14% Similarity=0.246 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecC
Q 012917 319 GSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMR 398 (453)
Q Consensus 319 ~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~ 398 (453)
+..+-+++..|+|..+|..+|.++ |+--. .... ....+.-.+.. | +..-..|.|-+++.+
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~--w~~~~----------~~~~-----~~~~~~~~~~~--l-~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTL--WTQSD----------LLHR-----LLTSPVLYNGN--L-VVGDSEGYLHWINVE 336 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEE--EEECT----------TTTS-----CCCCCEEETTE--E-EEECTTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE--Eeecc----------cCCC-----cccCCEEECCE--E-EEEeCCCeEEEEECC
Confidence 444444556789999999999864 43100 0000 00000001111 2 223457899999999
Q ss_pred CCCeEEEEEecCCeEEeccccccCccCCCCC-CcCcEEEEEeCCCCceEEEec
Q 012917 399 TGPRLLTIQCAKGSKILQPTYRFGSSMASSP-YVPLEVFLLNGDSGQLSVLNR 450 (453)
Q Consensus 399 ~G~RV~a~~v~~~~~Ll~~~~~~~g~~~~~~-~~~~~~~lld~~~g~l~~i~~ 450 (453)
+|..+..+++..+ ...+.+ .....+|+... +|.|..++|
T Consensus 337 tG~~~~~~~~~~~------------~~~~~~~~~~~~l~v~~~-~G~l~~~~~ 376 (376)
T 3q7m_A 337 DGRFVAQQKVDSS------------GFQTEPVAADGKLLIQAK-DGTVYSITR 376 (376)
T ss_dssp TCCEEEEEECCTT------------CBCSCCEEETTEEEEEBT-TSCEEEEEC
T ss_pred CCcEEEEEecCCC------------cceeCCEEECCEEEEEeC-CCEEEEEeC
Confidence 9998887775321 111222 33466777766 799998875
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=49.99 E-value=1.3e+02 Score=28.16 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=23.8
Q ss_pred eeEEEECCCCCEEEEEcC-CCcEEEEEcC--Cc
Q 012917 310 GERLTLSPSGSLAAITDS-LGRILLLDTQ--AL 339 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDs-lGRV~LiD~~--~~ 339 (453)
...|+++|+|+.+.++|+ .++|.++|+. +|
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 347899999987766665 5899999986 66
No 233
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=49.14 E-value=2e+02 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=33.8
Q ss_pred eeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccc
Q 012917 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 349 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyR 349 (453)
.-..|+++|+|++.++-..-+||..+|..++.+.++..+..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~ 172 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK 172 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC
Confidence 45689999999977766666999999999999988887743
No 234
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=48.68 E-value=21 Score=32.95 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=34.1
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEeccc
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGY 348 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGy 348 (453)
.....++++|+|++-+++-.-|+|..+|..+|.+++..+.-
T Consensus 199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 34567999999998877767799999999999998887654
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=45.48 E-value=1.8e+02 Score=26.56 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=31.1
Q ss_pred ccccCCCCeeeEEEECCCCCEEEEEc-CCCcEEEEEcCCceEEEEe
Q 012917 301 TCLKDHPRKGERLTLSPSGSLAAITD-SLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 301 ~~l~D~~R~~~~i~lsP~~~laa~tD-slGRV~LiD~~~~~ivRmW 345 (453)
..|.+.-+..+....+|+|+.+..+| .-|+|..+|. ++. ++.|
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~ 81 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL 81 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE
Confidence 34777778889999999998544444 4689999998 454 3444
No 236
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=44.13 E-value=64 Score=28.30 Aligned_cols=36 Identities=6% Similarity=0.067 Sum_probs=28.4
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 343 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR 343 (453)
.....|+++|+|++.+++..-++|..+|........
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence 345679999999888877778999999997765443
No 237
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=43.95 E-value=68 Score=33.50 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=40.3
Q ss_pred CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCC-CCCCccEEEEEEcCCCCeEEEeecCCCCeEEE
Q 012917 327 SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAP-VKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLT 405 (453)
Q Consensus 327 slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~-~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a 405 (453)
..|+|..+|+.+|.++--.+- .... ...+ ...+. +|++.-.+|.|.+++.++|+.+-.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~-------------~~~~-----~~~~~~t~gg---~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE-------------KFAA-----WGGTLYTKGG---LVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-------------SSCC-----CSBCEEETTT---EEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCCEEEEecC-------------CCCc-----cceeEEECCC---EEEEEcCCCeEEEEECCCCCEEEE
Confidence 468999999999987522211 0000 0000 00011 344577899999999999999999
Q ss_pred EEecC
Q 012917 406 IQCAK 410 (453)
Q Consensus 406 ~~v~~ 410 (453)
++++.
T Consensus 501 ~~~~~ 505 (571)
T 2ad6_A 501 FKMPS 505 (571)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 98764
No 238
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=40.79 E-value=86 Score=33.12 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=47.9
Q ss_pred CcEEEEEEEEeCCcEEEEEeccccEEEEEecCCc----Eeee--cccC-cccee-EEEEeeccCCCCcCCCCCeEEEEeC
Q 012917 77 EYITAIEWLVFEEMRALAVGTSRGYFLVYDLKGD----LVHR--QLIH-PGRIL-KLRVRGSRRDLTQDTAEEEVCVVMP 148 (453)
Q Consensus 77 e~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G~----LL~s--Q~lh-~~pV~-~ik~r~~~~~~~~~~~~eel~Ilyp 148 (453)
.+.|+|......+.+++-+||++|.|.=....+. .++. |.+. ..||. .+.+- ...+.|+|...
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~---------~~~~~Lyv~s~ 470 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFS---------INQLYLYVMSE 470 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEEC---------TTSSEEEEECS
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEc---------cCCCeEEEEec
Confidence 4688888777788999999999999876653321 2332 2333 45665 44421 22577999999
Q ss_pred CeEEEEeC
Q 012917 149 GVLARFDG 156 (453)
Q Consensus 149 ~~i~~idG 156 (453)
..|+.|.-
T Consensus 471 ~~V~kvpl 478 (539)
T 3al9_A 471 RQVTRVPV 478 (539)
T ss_dssp SEEEEEES
T ss_pred cccceeeh
Confidence 99987753
No 239
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=38.61 E-value=1.2e+02 Score=32.47 Aligned_cols=122 Identities=14% Similarity=0.057 Sum_probs=0.0
Q ss_pred eeEEEEC-CCCCEEEE-EcCCCc----EEEEEcCCc--eEEEEecccccceeeEEEEEecccccccccccCCCCCCccEE
Q 012917 310 GERLTLS-PSGSLAAI-TDSLGR----ILLLDTQAL--VVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381 (453)
Q Consensus 310 ~~~i~ls-P~~~laa~-tDslGR----V~LiD~~~~--~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~ 381 (453)
.....+| |||+++|. .|.-|+ |.++|+.+| .+-..+++. .....|-. ....++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~Wsp------------------Dg~~l~ 236 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGP------------------DHTSLF 236 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECS------------------STTEEE
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEec------------------CCCEEE
Q ss_pred EEEE--cCCCCeEEEeecCCCC--eEEEEEecCCeEEeccccccCc---cCCCCCCcCcEEEEEeCCCC--ce--EEEec
Q 012917 382 LAIH--APRKGIIEVWQMRTGP--RLLTIQCAKGSKILQPTYRFGS---SMASSPYVPLEVFLLNGDSG--QL--SVLNR 450 (453)
Q Consensus 382 LvIy--aprRg~lEVW~~~~G~--RV~a~~v~~~~~Ll~~~~~~~g---~~~~~~~~~~~~~lld~~~g--~l--~~i~~ 450 (453)
.+-+ ..+...|-+|++.+++ .+..+.-..+.....+....-| ...+.....++++++|.++| .. +.|.+
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
No 240
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=38.19 E-value=2e+02 Score=25.10 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=26.7
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEE
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVV 342 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~iv 342 (453)
.....|+++|+|++.+++...|+|..+|.. +.+.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 346688899999887777778899999988 6654
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=36.84 E-value=1e+02 Score=32.74 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEE
Q 012917 328 LGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQ 407 (453)
Q Consensus 328 lGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~ 407 (453)
.|+|.-+|+.+|.++-..+-- ...... .+.... . +|++.-..|.|.+|+.++|+.+..++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-----------~~~~~~------~~~t~g-g--~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-----------THWNGG------TLSTAG-N--LVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-----------SSCCCC------EEEETT-T--EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEeCCCCcEEEEccCC-----------CCCcCc------eeEeCC-C--EEEEECCcccchhhhhhcChhheEec
Confidence 389999999999986332210 000000 000001 1 55667889999999999999999999
Q ss_pred ecCC
Q 012917 408 CAKG 411 (453)
Q Consensus 408 v~~~ 411 (453)
++.+
T Consensus 497 ~~~~ 500 (668)
T 1kv9_A 497 AQSG 500 (668)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8753
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=32.95 E-value=44 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.1
Q ss_pred eeEEEECCCCCEEEEEcC----CCcEEEEEcCCceEEEEecc
Q 012917 310 GERLTLSPSGSLAAITDS----LGRILLLDTQALVVVRLWKG 347 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDs----lGRV~LiD~~~~~ivRmWKG 347 (453)
...|+++|++..+-++|. -++|+++|+.++.+.|+..|
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 367899998777778886 68999999999999998866
No 243
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.81 E-value=43 Score=34.11 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=47.4
Q ss_pred EEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-E--EEEeChhHHHHHHHH
Q 012917 91 RALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-L--ARFDGSEIQKMLQRW 166 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i--~~idG~~L~~~L~~c 166 (453)
-+|-+=|-.||+.+|+ |+|.+|++..+..++|-----.+ ...-++.+=..+ + +.||...|-+-+.+.
T Consensus 272 gviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~---------~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~ 342 (365)
T 2xzh_A 272 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE---------ATAGIIGVNRKGQVLSVCVEEENIIPYITNV 342 (365)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG---------GGTEEEEEETTCEEEEEEECTTTHHHHHHHT
T ss_pred CEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccC---------CCCcEEEEcCCCEEEEEEECcccEehhhhhc
Confidence 4566678999999999 88999999999999985332111 123344444443 2 778888888777654
No 244
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=30.20 E-value=2.3e+02 Score=24.60 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.9
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEE
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVR 343 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivR 343 (453)
...|+++|+|++.++...-++|..+|........
T Consensus 152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV 185 (270)
T ss_dssp CCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred ceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence 4568999999977766667899999998776544
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=30.02 E-value=1.3e+02 Score=31.62 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEE
Q 012917 327 SLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTI 406 (453)
Q Consensus 327 slGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~ 406 (453)
..|+|.-||+.+|.++-..+- .... ...+..... -||+++-.+|.|..++.++|+.+-.+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~-------------~~~~-----~~g~~~tag--glvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKE-------------HLPL-----WAGVLATAG--NLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEE-------------SSCC-----CSCCEEETT--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcceEEEEECCCCCEEEEecC-------------CCCC-----cccceEeCC--CEEEEECCCCcEEEEECCCCCEEEEe
Confidence 468999999999987622221 1000 000000001 15677889999999999999999999
Q ss_pred EecCC
Q 012917 407 QCAKG 411 (453)
Q Consensus 407 ~v~~~ 411 (453)
+.+.+
T Consensus 524 ~~~~g 528 (582)
T 1flg_A 524 QTGSG 528 (582)
T ss_dssp ECSSC
T ss_pred cCCCC
Confidence 97643
No 246
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=29.75 E-value=67 Score=28.84 Aligned_cols=38 Identities=5% Similarity=-0.042 Sum_probs=30.3
Q ss_pred CeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe
Q 012917 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 308 R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW 345 (453)
.....|+++|+|++.+++-.-|+|..+|..++..++..
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~ 263 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI 263 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence 34566999999998887767789999999877766554
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=29.58 E-value=3.8e+02 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.5
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++++.+.|.|-+++.++|..+..+...+
T Consensus 321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 321 VLMQAPKNGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEEEECCCCeEEEEECCCCCEeccccccc
Confidence 56788999999999999999997766543
No 248
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=29.12 E-value=2.4e+02 Score=27.23 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=26.0
Q ss_pred ccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCce
Q 012917 303 LKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALV 340 (453)
Q Consensus 303 l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ 340 (453)
+.+.-..-..|+.+|+|++. ++|..|||.++| ..+.
T Consensus 24 va~~l~~P~~ia~~pdG~l~-V~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 24 VASDLEVPWSIAPLGGGRYL-VTERPGRLVLIS-PSGK 59 (354)
T ss_dssp EECSCSCEEEEEEEETTEEE-EEETTTEEEEEC-SSCE
T ss_pred EeCCCCCCeEEEEcCCCeEE-EEeCCCEEEEEe-CCCc
Confidence 33444567889999999954 456669999998 4554
No 249
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=29.03 E-value=3.5e+02 Score=25.05 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=26.0
Q ss_pred eeeEEEECCCCCEEEEEc------CCCcEEEEEcCCceEEEEe
Q 012917 309 KGERLTLSPSGSLAAITD------SLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 309 ~~~~i~lsP~~~laa~tD------slGRV~LiD~~~~~ivRmW 345 (453)
....+.++|+|++.+.+. ..|+|+.+| ++.+.++.
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~ 175 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF 175 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee
Confidence 466799999999877653 358999999 57665543
No 250
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=28.16 E-value=1.7e+02 Score=31.46 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=40.5
Q ss_pred eeEEEECCCCCEEEEEcCCC------------cEEEEEcCCceEEEEecccccceeeEEEE
Q 012917 310 GERLTLSPSGSLAAITDSLG------------RILLLDTQALVVVRLWKGYRDASCVFMEM 358 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslG------------RV~LiD~~~~~ivRmWKGyRdAqc~Wi~~ 358 (453)
-..|+++|.|+|..++|.-+ .++..|..+|.+-|...|=.+|++.=+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~f 538 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeE
Confidence 47799999999999999742 48889999999999999988887654443
No 251
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=26.00 E-value=3.1e+02 Score=23.39 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=49.4
Q ss_pred cCCCCeeeEEEECCCCCEEEEEc-------------CCCcEEEEEcCCceEEEEec-ccccceeeEEEEEeccccccccc
Q 012917 304 KDHPRKGERLTLSPSGSLAAITD-------------SLGRILLLDTQALVVVRLWK-GYRDASCVFMEMLVNKDAATSSA 369 (453)
Q Consensus 304 ~D~~R~~~~i~lsP~~~laa~tD-------------slGRV~LiD~~~~~ivRmWK-GyRdAqc~Wi~~~~~~~~~~~~~ 369 (453)
.-..|.+..|.+.|||+.-++.| ..|.|.+.-+.++.-+.|.+ |. +....
T Consensus 10 ~~~~~~g~~L~I~~dG~V~Gt~~~~~~~s~l~~~~v~~G~V~I~g~~sg~yL~m~~~G~-------v~Gs~--------- 73 (132)
T 3q7x_A 10 LRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGT-------VDGTR--------- 73 (132)
T ss_dssp EEETTTCCEEEECTTSBEEEECCTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSB-------EEEEC---------
T ss_pred eeeccCcEEEEECCCCcEEeecCCCCCCcEEEEEecccCEEEEEEEcccEEEEECCCCC-------Eeecc---------
Confidence 34456777888888877776643 35666666666666666653 21 11100
Q ss_pred ccCCCCCCccEEEEEEcCCCCeEEEeecCCCCeEEEEEecCCeEEe
Q 012917 370 YYAPVKSDYCLCLAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKIL 415 (453)
Q Consensus 370 ~~~~~k~~~~l~LvIyaprRg~lEVW~~~~G~RV~a~~v~~~~~Ll 415 (453)
...+.+.|+=+.+...|.+-+...++|. -.+ ..+.++|.
T Consensus 74 ----~~s~ec~flE~~~~~~g~v~ikg~~sg~-YLa--mnk~G~ly 112 (132)
T 3q7x_A 74 ----DRSDPGIQFQISPEGNGEVLLRSTETGQ-FLR--INPDGTVD 112 (132)
T ss_dssp ----C-CCGGGCEEEEEEETTEEEEEETTTCC-EEE--ECTTSBEE
T ss_pred ----CCCCCceeEEEEeecCcEEEEEeccCCe-EEE--ECCCCcCc
Confidence 0111233555666666777777777775 222 33555543
No 252
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=25.56 E-value=3.9e+02 Score=28.30 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.7
Q ss_pred EEEEEcCCCCeEEEeecCCCCeEEEEEec
Q 012917 381 CLAIHAPRKGIIEVWQMRTGPRLLTIQCA 409 (453)
Q Consensus 381 ~LvIyaprRg~lEVW~~~~G~RV~a~~v~ 409 (453)
-+++++.+.|.|-+++.++|..+..+...
T Consensus 328 ~~l~~~~~~G~l~~lD~~tG~~l~~~~~~ 356 (677)
T 1kb0_A 328 KVILHAPKNGFFFVLDRTNGKFISAKNFV 356 (677)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred eEEEEECCCCEEEEEECCCCCEecccccc
Confidence 36788899999999999999999998865
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=24.79 E-value=4e+02 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.7
Q ss_pred cccCCCCeeeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEe
Q 012917 302 CLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLW 345 (453)
Q Consensus 302 ~l~D~~R~~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmW 345 (453)
.|+.. ...+.++++|+|++.++.-.-|||..+|.... +.+.|
T Consensus 27 ~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~ 68 (306)
T 2p4o_A 27 SFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA 68 (306)
T ss_dssp EECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE
T ss_pred eCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE
Confidence 45544 67889999999996555447799999998764 45544
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=24.73 E-value=4.7e+02 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=24.7
Q ss_pred EEEEcCCCCeEEEeecCCCCeEEEEEecC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLLTIQCAK 410 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~a~~v~~ 410 (453)
+++.+.+.|.|-+++..+|..+..++..+
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 344 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGK 344 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccc
Confidence 57888899999999999999997776543
No 255
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=24.70 E-value=4.1e+02 Score=27.69 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=63.8
Q ss_pred eEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecc-----cccceeeEEEEEecccccccccc----cCCCCCCccEE
Q 012917 311 ERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKG-----YRDASCVFMEMLVNKDAATSSAY----YAPVKSDYCLC 381 (453)
Q Consensus 311 ~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKG-----yRdAqc~Wi~~~~~~~~~~~~~~----~~~~k~~~~l~ 381 (453)
..|.++|+|+|.|+.... .|.++++-.+. ++. +.-.||.-..+.+.....++... ..-...+ -+
T Consensus 69 ~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~----~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~d--s~ 141 (452)
T 3pbp_A 69 FHVISSTSGDLLCLFNDN-EIFVMEVPWGY----SNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRD--SC 141 (452)
T ss_dssp CEEEECTTSSEEEEECSS-EEEEEECCTTC----SCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGG--CE
T ss_pred eEEEECCCCCEEEEecCC-eEEEEEecCcc----ccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCC--Ce
Confidence 459999999999997554 68888887321 111 12234434333211000000000 0000111 25
Q ss_pred EEEEcCCCCeEEEeecCCCCeEE-EEEecCCeEEeccccccCccCC-CCCCcCcEEEEEe-CCCCceEEEeccCC
Q 012917 382 LAIHAPRKGIIEVWQMRTGPRLL-TIQCAKGSKILQPTYRFGSSMA-SSPYVPLEVFLLN-GDSGQLSVLNRSLS 453 (453)
Q Consensus 382 LvIyaprRg~lEVW~~~~G~RV~-a~~v~~~~~Ll~~~~~~~g~~~-~~~~~~~~~~lld-~~~g~l~~i~~~~~ 453 (453)
|||--- ++.|.+|++....-.- .++ +-..-+-.....+-..+ +=+-.+.-.|++- -..|.++.|.|.|+
T Consensus 142 LVVLts-D~~Ir~yDl~~s~~~P~~L~--k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP 213 (452)
T 3pbp_A 142 IVVLKE-DDTITMFDILNSQEKPIVLN--KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLP 213 (452)
T ss_dssp EEEEET-TSCEEEEETTCTTSCCEEES--CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCC
T ss_pred EEEEec-CCEEEEEEcccCCCCCcchh--ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCc
Confidence 666554 8999999998622111 222 11000111111122111 0011357777765 23699999999875
No 256
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.16 E-value=69 Score=33.87 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred EEEEEeccccEEEEEe-cCCcEeeecccCccceeEEEEeeccCCCCcCCCCCeEEEEeCCe-E--EEEeChhHHHHHHHH
Q 012917 91 RALAVGTSRGYFLVYD-LKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGV-L--ARFDGSEIQKMLQRW 166 (453)
Q Consensus 91 ~~I~VG~ssG~vrfyt-e~G~LL~sQ~lh~~pV~~ik~r~~~~~~~~~~~~eel~Ilyp~~-i--~~idG~~L~~~L~~c 166 (453)
-+|-+=|..||+.+|+ |+|.+|++..+..++|---. .. ....-++.+=..+ | +.||-..|-+-+.+.
T Consensus 271 gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~----~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~ 341 (494)
T 1bpo_A 271 DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA----PH-----EATAGIIGVNRKGQVLSVCVEEENIIPYITNV 341 (494)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE----EE-----TTTTEEEEEETTCEEEEEEECTTTHHHHHHHT
T ss_pred CEEEEEecCceEEEEecccceeeeeecccCCceEEec----cc-----CCCCcEEEEccCceEEEEEEccccchhhhhhc
Confidence 4566779999999999 88999999999999995422 11 1133344444443 2 788998888877654
Q ss_pred H
Q 012917 167 F 167 (453)
Q Consensus 167 ~ 167 (453)
.
T Consensus 342 l 342 (494)
T 1bpo_A 342 L 342 (494)
T ss_dssp T
T ss_pred c
Confidence 3
No 257
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=22.65 E-value=4e+02 Score=26.64 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=46.4
Q ss_pred eeEEEECCCCCEEEEEcCCCcEEEEEcCCceEEEEecccccceeeEEEEEecccccccccccCCCCCCccEEEEEEcCCC
Q 012917 310 GERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLCLAIHAPRK 389 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDslGRV~LiD~~~~~ivRmWKGyRdAqc~Wi~~~~~~~~~~~~~~~~~~k~~~~l~LvIyaprR 389 (453)
+.+|+. ++++.+++ ..|.|.++|+.+..-...-+.++..-+ -+.. . .. . ++++ -..
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~--~-------------~p--~-~av~--~~d 145 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKN--V-------------NN--T-LVIL--NSV 145 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEE--C-------------SS--E-EEEE--ETT
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEe--c-------------CC--C-EEEE--ECC
Confidence 678888 99888888 669999999988776655555554311 1110 0 00 1 3333 468
Q ss_pred CeEEEeecCCCCeE
Q 012917 390 GIIEVWQMRTGPRL 403 (453)
Q Consensus 390 g~lEVW~~~~G~RV 403 (453)
|.|-||+++.+..+
T Consensus 146 G~L~v~dl~~~~~~ 159 (388)
T 1xip_A 146 NDLSALDLRTKSTK 159 (388)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CCEEEEEccCCccc
Confidence 99999999988643
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=21.58 E-value=4.7e+02 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=24.1
Q ss_pred eeEEEECCCCCEEEEEcCC-CcEEEEEcCCc
Q 012917 310 GERLTLSPSGSLAAITDSL-GRILLLDTQAL 339 (453)
Q Consensus 310 ~~~i~lsP~~~laa~tDsl-GRV~LiD~~~~ 339 (453)
...|+++|+|+++-++|.. +||..+|+...
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 4569999999977777665 89999998853
No 259
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=21.38 E-value=68 Score=37.03 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEEEeCC--cEEEEEec----------cccEEEEEecC
Q 012917 74 IASEYITAIEWLVFEE--MRALAVGT----------SRGYFLVYDLK 108 (453)
Q Consensus 74 ~~~e~ITs~~~lp~~d--w~~I~VG~----------ssG~vrfyte~ 108 (453)
+++|.++|++.+.|.+ ..+++||| +.|++.+|...
T Consensus 826 ~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 826 LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 3489999999999954 47999999 57899999864
No 260
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=21.21 E-value=5e+02 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEE
Q 012917 318 SGSLAAITDSLGRILLLDTQALVVV 342 (453)
Q Consensus 318 ~~~laa~tDslGRV~LiD~~~~~iv 342 (453)
.+..+.+++..|+|..+|..+|..+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~ 76 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI 76 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee
Confidence 3455555666789999999999876
No 261
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=20.52 E-value=2.2e+02 Score=31.08 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred cEEEEEEEEeCCcEEEEEeccccEEEEEecCC----cEeeec--cc-Cccce-eEEEEeeccCCCCcCCCCCeEEEEeCC
Q 012917 78 YITAIEWLVFEEMRALAVGTSRGYFLVYDLKG----DLVHRQ--LI-HPGRI-LKLRVRGSRRDLTQDTAEEEVCVVMPG 149 (453)
Q Consensus 78 ~ITs~~~lp~~dw~~I~VG~ssG~vrfyte~G----~LL~sQ--~l-h~~pV-~~ik~r~~~~~~~~~~~~eel~Ilyp~ 149 (453)
+.|+|.--...+.+++-+||++|.|.=.-..+ ..++.+ .+ ...|| ..+.+- ...+.|+|....
T Consensus 400 ~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~---------~~~~~Lyv~s~~ 470 (681)
T 3oky_A 400 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFS---------INQLYLYVMSER 470 (681)
T ss_dssp CBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEEC---------TTSSEEEEECSS
T ss_pred ceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEc---------CCCCEEEEEecC
Confidence 46666665557789999999999987544322 345543 34 35566 344421 125679999999
Q ss_pred eEEEEeCh
Q 012917 150 VLARFDGS 157 (453)
Q Consensus 150 ~i~~idG~ 157 (453)
.|..+.-.
T Consensus 471 ~V~qvPl~ 478 (681)
T 3oky_A 471 QVTRVPVE 478 (681)
T ss_dssp EEEEEESC
T ss_pred EEEEEEhh
Confidence 99888753
No 262
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=20.45 E-value=2.3e+02 Score=32.68 Aligned_cols=78 Identities=9% Similarity=0.100 Sum_probs=46.1
Q ss_pred eeeeccCcceeeeeecceEEEEeecCCCCCceeE--eecCCCCCCCcEEEEEEEEeCC----cEEEEEecc-ccEEEEEe
Q 012917 34 NLLCALDMHTIALANRYQTVIINWADPEGLVAKI--RPELSPIASEYITAIEWLVFEE----MRALAVGTS-RGYFLVYD 106 (453)
Q Consensus 34 ~~~~sp~~~~la~A~~~~~v~~~w~~~~~~~~~~--~g~l~~~~~e~ITs~~~lp~~d----w~~I~VG~s-sG~vrfyt 106 (453)
+.+.|..+..+++|.+..+++..-+. +++.- +-++ ++.|+++..-|.++ -.+++||+. ++.|++|+
T Consensus 516 I~~As~n~~~vvva~g~~l~~fel~~---~~L~~~~~~~l----~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 516 ISVASCNSSQVVVAVGRALYYLQIHP---QELRQISHTEM----EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCEEEECSSEEEEEETTEEEEEEEET---TEEEEEEEEEC----SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCEEEEEECCEEEEEEeeC---CceeeecccCC----CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 33444555667777666555544332 12221 2233 23477777666654 368899996 99999999
Q ss_pred cC-CcEeeecccC
Q 012917 107 LK-GDLVHRQLIH 118 (453)
Q Consensus 107 e~-G~LL~sQ~lh 118 (453)
.. -+.+..|.+-
T Consensus 589 L~~l~~~~~~~L~ 601 (1158)
T 3ei3_A 589 LPSFELLHKEMLG 601 (1158)
T ss_dssp TTTCCEEEEEECC
T ss_pred CCCCCeEEEEECC
Confidence 54 4556666553
Done!