Query 012918
Match_columns 453
No_of_seqs 152 out of 1090
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01301 GPH_sucrose GPH fami 100.0 9.3E-59 2E-63 481.9 24.8 388 3-449 85-476 (477)
2 KOG0637 Sucrose transporter an 100.0 3.7E-53 8E-58 422.1 15.0 381 1-444 111-497 (498)
3 KOG0569 Permease of the major 99.9 3.9E-27 8.5E-32 243.3 13.7 340 41-452 120-462 (485)
4 KOG0254 Predicted transporter 99.9 2.1E-23 4.6E-28 221.3 13.0 342 42-452 147-491 (513)
5 PF00083 Sugar_tr: Sugar (and 99.9 4.8E-25 1E-29 229.2 -10.7 333 45-452 110-444 (451)
6 TIGR00887 2A0109 phosphate:H+ 99.9 7.3E-21 1.6E-25 201.3 15.9 354 43-452 121-496 (502)
7 PF13347 MFS_2: MFS/sugar tran 99.8 4.7E-20 1E-24 191.2 17.5 304 10-420 51-387 (428)
8 TIGR00792 gph sugar (Glycoside 99.8 5.1E-18 1.1E-22 175.4 19.4 335 7-448 46-424 (437)
9 PRK10077 xylE D-xylose transpo 99.8 2.5E-18 5.4E-23 180.0 16.8 320 47-452 130-465 (479)
10 TIGR01299 synapt_SV2 synaptic 99.8 7E-19 1.5E-23 192.3 11.1 363 45-452 263-741 (742)
11 TIGR00879 SP MFS transporter, 99.8 1.2E-17 2.7E-22 172.5 15.9 338 45-452 135-478 (481)
12 TIGR00898 2A0119 cation transp 99.7 7.6E-18 1.6E-22 177.9 13.0 316 44-452 187-502 (505)
13 PRK10429 melibiose:sodium symp 99.7 2.7E-16 5.8E-21 165.3 19.1 313 7-420 53-396 (473)
14 PRK11551 putative 3-hydroxyphe 99.7 2.1E-16 4.5E-21 162.0 16.3 291 45-449 111-401 (406)
15 TIGR00893 2A0114 d-galactonate 99.7 1.2E-15 2.5E-20 153.5 18.2 307 45-442 90-397 (399)
16 PRK10642 proline/glycine betai 99.7 6.1E-16 1.3E-20 163.3 16.4 310 46-452 127-437 (490)
17 COG2211 MelB Na+/melibiose sym 99.7 3.3E-15 7.1E-20 153.8 19.8 304 10-420 62-399 (467)
18 PRK09669 putative symporter Ya 99.6 3E-15 6.6E-20 155.9 16.4 305 4-420 53-391 (444)
19 PRK09952 shikimate transporter 99.6 3.7E-15 8E-20 155.1 15.9 302 46-448 134-436 (438)
20 PRK10489 enterobactin exporter 99.6 5.4E-15 1.2E-19 152.4 16.5 281 54-452 127-407 (417)
21 PRK10406 alpha-ketoglutarate t 99.6 1.1E-14 2.4E-19 151.1 18.5 296 47-453 134-431 (432)
22 PRK11462 putative transporter; 99.6 1.8E-14 3.9E-19 151.1 19.2 297 10-419 59-389 (460)
23 PF11700 ATG22: Vacuole efflux 99.6 1.2E-14 2.5E-19 152.5 16.1 345 4-451 78-474 (477)
24 TIGR00899 2A0120 sugar efflux 99.6 2.1E-14 4.6E-19 144.8 16.7 272 52-446 102-375 (375)
25 PRK11663 regulatory protein Uh 99.6 2.7E-14 5.9E-19 148.3 17.2 305 49-451 123-431 (434)
26 TIGR00712 glpT glycerol-3-phos 99.6 7.6E-14 1.6E-18 145.1 18.4 302 53-448 134-437 (438)
27 PRK11010 ampG muropeptide tran 99.6 6.7E-14 1.5E-18 147.9 18.1 319 12-443 61-402 (491)
28 PRK09874 drug efflux system pr 99.6 8.2E-14 1.8E-18 142.5 17.3 277 53-444 122-398 (408)
29 TIGR00901 2A0125 AmpG-related 99.6 5.9E-14 1.3E-18 141.4 15.3 300 8-400 32-354 (356)
30 TIGR00900 2A0121 H+ Antiporter 99.5 5.3E-14 1.1E-18 140.6 14.0 261 47-418 102-364 (365)
31 PRK03545 putative arabinose tr 99.5 1.5E-13 3.2E-18 140.5 17.5 267 54-444 114-380 (390)
32 PRK11273 glpT sn-glycerol-3-ph 99.5 1.4E-13 3E-18 143.8 17.3 303 51-450 134-442 (452)
33 TIGR00710 efflux_Bcr_CflA drug 99.5 2.5E-13 5.3E-18 137.4 17.8 257 44-412 100-356 (385)
34 TIGR00883 2A0106 metabolite-pr 99.5 1E-13 2.2E-18 139.9 14.5 271 47-420 106-378 (394)
35 TIGR00890 2A0111 Oxalate/Forma 99.5 1.3E-13 2.7E-18 138.3 14.9 132 284-437 244-375 (377)
36 cd06174 MFS The Major Facilita 99.5 1.5E-13 3.2E-18 136.1 14.6 256 42-440 92-348 (352)
37 TIGR00891 2A0112 putative sial 99.5 6E-14 1.3E-18 142.6 11.4 286 46-421 109-394 (405)
38 PRK09848 glucuronide transport 99.5 3.9E-13 8.5E-18 140.1 16.3 303 7-419 55-390 (448)
39 TIGR00881 2A0104 phosphoglycer 99.5 1.6E-13 3.4E-18 137.7 12.2 284 44-419 90-374 (379)
40 TIGR02332 HpaX 4-hydroxyphenyl 99.5 8.4E-13 1.8E-17 136.4 16.9 306 46-434 105-411 (412)
41 PRK11102 bicyclomycin/multidru 99.5 1.5E-12 3.2E-17 131.9 17.8 288 45-447 87-375 (377)
42 COG2814 AraJ Arabinose efflux 99.5 1.4E-12 3.1E-17 131.8 17.4 282 42-445 106-387 (394)
43 PRK09705 cynX putative cyanate 99.5 4E-13 8.7E-18 137.8 13.5 287 42-451 102-388 (393)
44 PRK08633 2-acyl-glycerophospho 99.5 9.1E-13 2E-17 152.5 17.8 299 48-446 114-412 (1146)
45 PRK15075 citrate-proton sympor 99.5 1.1E-12 2.5E-17 136.2 16.5 262 54-420 134-397 (434)
46 PRK15011 sugar efflux transpor 99.5 1.4E-12 3.1E-17 133.6 16.9 266 58-447 126-393 (393)
47 PRK12382 putative transporter; 99.5 8.5E-13 1.8E-17 134.8 15.0 136 286-445 255-390 (392)
48 PRK11646 multidrug resistance 99.5 2E-12 4.4E-17 133.0 17.7 280 46-446 108-390 (400)
49 TIGR00897 2A0118 polyol permea 99.5 3.5E-12 7.6E-17 131.1 19.4 176 230-442 223-399 (402)
50 PRK10473 multidrug efflux syst 99.5 1.8E-12 4E-17 132.3 17.1 279 47-449 101-381 (392)
51 PRK11902 ampG muropeptide tran 99.5 3.1E-12 6.7E-17 131.4 18.8 272 54-441 111-387 (402)
52 PRK05122 major facilitator sup 99.5 1.8E-12 4E-17 132.6 16.9 140 286-450 255-394 (399)
53 PRK12307 putative sialic acid 99.5 1.2E-12 2.7E-17 134.9 15.7 296 46-449 115-414 (426)
54 KOG0253 Synaptic vesicle trans 99.5 3.4E-13 7.3E-18 132.5 10.7 332 49-452 178-527 (528)
55 PRK09556 uhpT sugar phosphate 99.4 5.5E-13 1.2E-17 139.9 13.1 299 49-442 134-447 (467)
56 TIGR00903 2A0129 major facilit 99.4 6.3E-12 1.4E-16 128.1 18.0 267 56-447 97-367 (368)
57 TIGR00895 2A0115 benzoate tran 99.4 5.8E-13 1.3E-17 134.7 10.0 286 42-414 110-397 (398)
58 PRK10213 nepI ribonucleoside t 99.4 3.5E-12 7.5E-17 131.0 15.4 271 47-441 118-388 (394)
59 PRK10091 MFS transport protein 99.4 1.1E-11 2.4E-16 126.5 17.3 274 47-443 101-375 (382)
60 PRK11195 lysophospholipid tran 99.4 1.4E-11 3.1E-16 126.4 18.2 278 47-439 98-375 (393)
61 PRK06814 acylglycerophosphoeth 99.4 5.9E-12 1.3E-16 146.0 16.9 299 47-440 118-418 (1140)
62 PRK10054 putative transporter; 99.4 3.6E-12 7.7E-17 131.0 13.3 273 55-446 114-386 (395)
63 TIGR00894 2A0114euk Na(+)-depe 99.4 8.5E-12 1.8E-16 130.6 15.8 301 47-442 141-448 (465)
64 PF07690 MFS_1: Major Facilita 99.4 2.7E-12 5.8E-17 127.7 11.3 261 44-408 92-352 (352)
65 PRK10504 putative transporter; 99.3 1.3E-11 2.9E-16 129.2 15.0 305 46-419 107-417 (471)
66 PRK09528 lacY galactoside perm 99.3 3.3E-12 7.1E-17 131.9 9.1 140 284-447 266-406 (420)
67 PRK15402 multidrug efflux syst 99.3 8.2E-11 1.8E-15 120.8 19.5 278 54-444 118-395 (406)
68 TIGR00892 2A0113 monocarboxyla 99.3 2E-11 4.3E-16 127.9 15.1 292 48-439 119-416 (455)
69 TIGR00902 2A0127 phenyl propri 99.3 2.4E-11 5.2E-16 124.0 15.0 271 47-440 104-375 (382)
70 TIGR00711 efflux_EmrB drug res 99.3 8.3E-12 1.8E-16 130.7 10.9 296 45-416 98-409 (485)
71 PRK14995 methyl viologen resis 99.3 1.8E-11 4E-16 129.4 12.9 290 48-415 105-411 (495)
72 PRK03893 putative sialic acid 99.3 5.2E-11 1.1E-15 125.4 16.2 141 284-446 315-456 (496)
73 PF05977 MFS_3: Transmembrane 99.3 5.1E-11 1.1E-15 126.4 16.0 279 55-449 121-400 (524)
74 PRK11128 putative 3-phenylprop 99.3 4.6E-11 1E-15 121.9 15.1 274 48-444 105-379 (382)
75 TIGR00882 2A0105 oligosacchari 99.3 6.3E-11 1.4E-15 121.3 15.8 132 287-442 261-393 (396)
76 TIGR02718 sider_RhtX_FptX side 99.3 9.1E-11 2E-15 119.9 16.3 177 231-440 210-387 (390)
77 KOG0255 Synaptic vesicle trans 99.3 1.6E-11 3.4E-16 130.6 11.1 321 46-452 180-500 (521)
78 PLN00028 nitrate transmembrane 99.3 7.7E-11 1.7E-15 124.1 15.3 284 56-443 142-432 (476)
79 PRK03699 putative transporter; 99.3 9.9E-11 2.1E-15 119.9 15.5 270 48-439 106-375 (394)
80 TIGR00886 2A0108 nitrite extru 99.2 7.6E-11 1.7E-15 118.6 12.7 261 47-400 101-362 (366)
81 TIGR00889 2A0110 nucleoside tr 99.2 1.4E-10 3E-15 120.2 14.6 149 284-450 255-408 (418)
82 PRK11043 putative transporter; 99.2 3.2E-10 6.9E-15 116.2 16.9 248 53-417 110-357 (401)
83 KOG0252 Inorganic phosphate tr 99.2 1.2E-11 2.6E-16 125.1 5.1 345 46-452 153-505 (538)
84 TIGR01272 gluP glucose/galacto 99.1 1E-09 2.2E-14 109.2 15.5 280 39-428 12-299 (310)
85 PRK10133 L-fucose transporter; 99.1 9.5E-10 2.1E-14 114.7 15.8 293 45-440 125-429 (438)
86 TIGR00896 CynX cyanate transpo 99.1 5.8E-10 1.3E-14 112.3 13.4 247 55-421 105-352 (355)
87 COG2270 Permeases of the major 99.1 4.2E-10 9.1E-15 113.4 11.9 301 43-447 121-431 (438)
88 PRK15403 multidrug efflux syst 99.1 5.2E-09 1.1E-13 108.2 19.5 274 54-441 121-394 (413)
89 PRK03633 putative MFS family t 99.1 2.2E-09 4.8E-14 109.4 16.4 130 286-442 241-370 (381)
90 PRK11652 emrD multidrug resist 99.1 3.3E-09 7.2E-14 108.3 17.1 247 54-416 113-359 (394)
91 PRK10054 putative transporter; 99.0 2.1E-09 4.5E-14 110.4 10.6 182 226-447 4-185 (395)
92 KOG2532 Permease of the major 99.0 4.9E-09 1.1E-13 109.7 13.3 295 46-440 137-443 (466)
93 COG2271 UhpC Sugar phosphate p 99.0 1.3E-08 2.8E-13 102.7 15.5 290 55-442 135-432 (448)
94 PRK15034 nitrate/nitrite trans 98.9 1.3E-08 2.9E-13 106.1 15.0 282 53-442 143-452 (462)
95 PRK11646 multidrug resistance 98.9 4.2E-09 9.1E-14 108.4 9.9 181 225-447 8-188 (400)
96 PF03209 PUCC: PUCC protein; 98.9 8.4E-08 1.8E-12 97.0 18.6 297 37-440 89-394 (403)
97 TIGR00880 2_A_01_02 Multidrug 98.9 7.4E-09 1.6E-13 88.3 8.9 136 288-447 6-141 (141)
98 PRK10207 dipeptide/tripeptide 98.9 1.3E-08 2.9E-13 107.6 12.1 170 226-431 11-181 (489)
99 PRK15403 multidrug efflux syst 98.9 6.4E-09 1.4E-13 107.5 8.9 143 283-449 54-196 (413)
100 TIGR00710 efflux_Bcr_CflA drug 98.8 4.1E-08 8.9E-13 99.2 12.3 143 284-450 44-186 (385)
101 TIGR00788 fbt folate/biopterin 98.8 2.7E-08 5.9E-13 104.7 11.2 145 288-445 296-446 (468)
102 PRK10091 MFS transport protein 98.8 3E-08 6.5E-13 101.1 11.2 182 227-448 1-182 (382)
103 PF07690 MFS_1: Major Facilita 98.8 2.7E-08 5.9E-13 98.9 10.6 172 235-445 2-173 (352)
104 TIGR00900 2A0121 H+ Antiporter 98.8 2.3E-08 5.1E-13 99.7 9.4 180 233-447 3-183 (365)
105 TIGR00895 2A0115 benzoate tran 98.8 3.7E-08 8.1E-13 99.5 10.7 141 284-448 56-196 (398)
106 TIGR00885 fucP L-fucose:H+ sym 98.8 2E-07 4.3E-12 96.5 15.9 269 46-418 103-382 (410)
107 PRK09584 tppB putative tripept 98.8 5.7E-08 1.2E-12 103.1 12.1 185 226-446 18-206 (500)
108 TIGR00924 yjdL_sub1_fam amino 98.7 7.2E-08 1.6E-12 101.7 12.6 177 226-438 7-186 (475)
109 TIGR00711 efflux_EmrB drug res 98.7 3.6E-08 7.7E-13 103.3 10.3 177 233-449 6-182 (485)
110 PRK10473 multidrug efflux syst 98.7 6.4E-08 1.4E-12 98.8 11.4 142 284-449 42-183 (392)
111 PRK10504 putative transporter; 98.7 4.1E-08 9E-13 102.8 9.9 181 230-450 11-191 (471)
112 TIGR00891 2A0112 putative sial 98.7 7.3E-08 1.6E-12 97.8 11.4 142 284-448 51-192 (405)
113 PRK11663 regulatory protein Uh 98.7 9.2E-08 2E-12 99.4 11.5 140 284-447 62-201 (434)
114 PRK11195 lysophospholipid tran 98.7 5.2E-08 1.1E-12 100.0 9.5 177 227-448 1-177 (393)
115 COG2223 NarK Nitrate/nitrite t 98.7 4.1E-08 8.8E-13 99.1 8.2 280 52-441 119-398 (417)
116 PRK03545 putative arabinose tr 98.7 6.2E-08 1.3E-12 99.0 9.8 141 284-448 48-188 (390)
117 TIGR02332 HpaX 4-hydroxyphenyl 98.7 1.2E-07 2.7E-12 97.9 11.6 143 284-448 47-193 (412)
118 PF01306 LacY_symp: LacY proto 98.7 1.6E-07 3.5E-12 96.1 12.1 137 289-449 268-405 (412)
119 TIGR00881 2A0104 phosphoglycer 98.7 1E-07 2.3E-12 95.4 10.6 141 284-448 34-175 (379)
120 PRK15462 dipeptide/tripeptide 98.7 2.4E-07 5.1E-12 97.7 13.1 176 227-438 7-183 (493)
121 PRK10213 nepI ribonucleoside t 98.6 8.8E-08 1.9E-12 98.4 9.5 142 284-449 59-200 (394)
122 PRK15402 multidrug efflux syst 98.6 2.2E-07 4.7E-12 95.4 12.4 142 284-449 52-193 (406)
123 TIGR00893 2A0114 d-galactonate 98.6 8.1E-08 1.8E-12 96.3 8.7 142 284-449 33-174 (399)
124 PRK05122 major facilitator sup 98.6 4E-07 8.8E-12 93.0 13.8 185 230-446 16-200 (399)
125 PRK11551 putative 3-hydroxyphe 98.6 1.8E-07 4E-12 95.7 11.3 141 284-448 54-194 (406)
126 PRK14995 methyl viologen resis 98.6 1.5E-07 3.3E-12 99.6 11.0 145 283-450 44-188 (495)
127 KOG2504 Monocarboxylate transp 98.6 2E-07 4.2E-12 98.9 11.6 177 229-445 298-476 (509)
128 KOG2615 Permease of the major 98.6 3.7E-07 8.1E-12 91.0 12.5 292 53-435 136-432 (451)
129 PRK09874 drug efflux system pr 98.6 2E-07 4.3E-12 95.3 11.2 182 230-447 15-196 (408)
130 PRK10207 dipeptide/tripeptide 98.6 8E-07 1.7E-11 94.1 16.1 113 288-412 317-436 (489)
131 KOG1330 Sugar transporter/spin 98.6 1.7E-08 3.8E-13 102.7 2.9 85 47-145 131-215 (493)
132 TIGR00897 2A0118 polyol permea 98.6 3.9E-07 8.4E-12 93.7 11.9 183 227-445 11-194 (402)
133 TIGR00924 yjdL_sub1_fam amino 98.6 6.4E-07 1.4E-11 94.5 13.8 143 285-442 317-466 (475)
134 cd06174 MFS The Major Facilita 98.6 2.9E-07 6.4E-12 90.9 10.6 167 234-440 4-170 (352)
135 TIGR00899 2A0120 sugar efflux 98.6 3.1E-07 6.8E-12 92.5 10.7 143 284-448 37-180 (375)
136 TIGR00903 2A0129 major facilit 98.6 2E-07 4.4E-12 95.0 9.2 139 285-448 31-169 (368)
137 PRK10489 enterobactin exporter 98.5 2.2E-07 4.7E-12 95.8 9.0 183 230-448 18-200 (417)
138 TIGR01299 synapt_SV2 synaptic 98.5 2.1E-07 4.5E-12 102.7 8.8 141 284-447 206-357 (742)
139 PRK11102 bicyclomycin/multidru 98.5 3.1E-07 6.6E-12 92.9 9.2 141 284-448 30-170 (377)
140 PRK11652 emrD multidrug resist 98.5 6E-07 1.3E-11 91.7 11.3 141 284-448 47-187 (394)
141 PRK10642 proline/glycine betai 98.5 8.1E-07 1.8E-11 93.9 12.4 145 288-447 65-215 (490)
142 PRK10077 xylE D-xylose transpo 98.5 5.7E-07 1.2E-11 94.2 10.9 152 284-448 59-218 (479)
143 PRK12307 putative sialic acid 98.5 9.2E-07 2E-11 91.1 12.1 140 284-448 57-196 (426)
144 TIGR00712 glpT glycerol-3-phos 98.5 5.3E-07 1.2E-11 93.8 10.2 145 284-447 65-209 (438)
145 TIGR00886 2A0108 nitrite extru 98.5 7.6E-07 1.7E-11 89.5 11.0 148 232-416 4-151 (366)
146 PRK03633 putative MFS family t 98.5 1E-06 2.2E-11 89.8 11.8 152 228-417 5-156 (381)
147 PRK12382 putative transporter; 98.5 1.7E-06 3.8E-11 88.2 13.5 147 284-447 55-201 (392)
148 PRK11043 putative transporter; 98.5 1.3E-06 2.8E-11 89.5 12.2 139 284-446 45-183 (401)
149 TIGR00879 SP MFS transporter, 98.5 8.8E-07 1.9E-11 91.4 11.1 143 284-448 75-220 (481)
150 TIGR00898 2A0119 cation transp 98.5 5.3E-07 1.2E-11 95.3 9.5 136 284-447 131-266 (505)
151 TIGR00890 2A0111 Oxalate/Forma 98.5 7.8E-07 1.7E-11 89.0 10.0 137 284-445 42-178 (377)
152 PRK08633 2-acyl-glycerophospho 98.4 1.2E-06 2.5E-11 101.9 12.7 115 284-417 51-165 (1146)
153 TIGR00882 2A0105 oligosacchari 98.4 1.7E-06 3.8E-11 88.5 12.3 185 229-447 2-186 (396)
154 PRK09952 shikimate transporter 98.4 1.6E-06 3.4E-11 90.4 11.6 143 291-448 75-223 (438)
155 PF03825 Nuc_H_symport: Nucleo 98.4 6E-06 1.3E-10 85.2 15.7 185 231-448 209-399 (400)
156 PRK10406 alpha-ketoglutarate t 98.4 1.9E-06 4.1E-11 89.5 12.0 143 291-448 74-222 (432)
157 KOG3764 Vesicular amine transp 98.4 6.6E-07 1.4E-11 89.7 8.0 146 280-449 107-252 (464)
158 PRK03893 putative sialic acid 98.4 1.3E-06 2.8E-11 92.0 10.7 140 284-448 59-198 (496)
159 PRK09556 uhpT sugar phosphate 98.4 1.9E-06 4.1E-11 90.5 11.5 145 284-445 68-213 (467)
160 PRK09528 lacY galactoside perm 98.4 2.2E-06 4.8E-11 88.5 11.7 184 230-447 11-194 (420)
161 PLN00028 nitrate transmembrane 98.4 3.7E-06 7.9E-11 88.7 13.5 136 286-444 77-219 (476)
162 TIGR00887 2A0109 phosphate:H+ 98.4 9.4E-07 2E-11 93.7 8.8 147 284-447 60-227 (502)
163 TIGR01301 GPH_sucrose GPH fami 98.4 1.7E-06 3.6E-11 90.9 10.2 197 231-448 6-222 (477)
164 PRK11273 glpT sn-glycerol-3-ph 98.4 2.1E-06 4.6E-11 89.7 10.8 144 284-447 67-211 (452)
165 PRK03699 putative transporter; 98.4 5.4E-06 1.2E-10 84.9 13.5 139 284-446 46-186 (394)
166 PRK09705 cynX putative cyanate 98.3 2.3E-06 5.1E-11 87.7 10.5 129 284-436 48-176 (393)
167 PRK15011 sugar efflux transpor 98.3 3.2E-06 6.8E-11 86.7 11.4 182 230-448 16-198 (393)
168 TIGR00805 oat sodium-independe 98.3 6.6E-06 1.4E-10 89.8 14.2 231 37-324 172-413 (633)
169 PF05977 MFS_3: Transmembrane 98.3 2.2E-06 4.8E-11 91.3 9.7 136 286-440 51-186 (524)
170 TIGR00892 2A0113 monocarboxyla 98.3 2.7E-06 5.7E-11 89.2 10.2 136 285-445 59-195 (455)
171 TIGR00883 2A0106 metabolite-pr 98.3 3.2E-06 6.9E-11 85.1 10.1 140 293-447 48-193 (394)
172 PRK06814 acylglycerophosphoeth 98.3 5.7E-06 1.2E-10 96.3 13.4 145 282-448 54-198 (1140)
173 KOG1330 Sugar transporter/spin 98.3 7.9E-07 1.7E-11 90.8 4.6 140 286-448 74-213 (493)
174 PRK09584 tppB putative tripept 98.2 3.5E-05 7.5E-10 81.9 16.0 111 288-411 324-438 (500)
175 KOG2533 Permease of the major 98.2 6.1E-06 1.3E-10 87.0 10.0 207 47-321 144-354 (495)
176 KOG2615 Permease of the major 98.2 4.6E-06 9.9E-11 83.3 8.0 137 287-448 75-217 (451)
177 COG2814 AraJ Arabinose efflux 98.2 8.9E-06 1.9E-10 82.8 9.8 145 277-445 43-189 (394)
178 PRK15075 citrate-proton sympor 98.1 2.2E-05 4.9E-10 81.5 12.3 189 232-448 18-215 (434)
179 TIGR00901 2A0125 AmpG-related 98.1 1.2E-05 2.5E-10 80.9 9.8 133 297-448 38-182 (356)
180 TIGR00896 CynX cyanate transpo 98.1 1.8E-05 3.9E-10 79.6 10.7 129 284-436 39-167 (355)
181 TIGR00894 2A0114euk Na(+)-depe 98.1 8.2E-06 1.8E-10 85.4 8.4 141 284-446 80-221 (465)
182 COG2271 UhpC Sugar phosphate p 98.1 3.4E-05 7.4E-10 78.3 12.3 135 287-449 71-214 (448)
183 PRK15034 nitrate/nitrite trans 98.0 3.9E-05 8.4E-10 80.3 11.5 147 284-448 74-236 (462)
184 TIGR00885 fucP L-fucose:H+ sym 98.0 3.8E-05 8.2E-10 79.5 10.9 113 284-415 42-154 (410)
185 KOG0255 Synaptic vesicle trans 98.0 1.9E-05 4.1E-10 84.0 8.9 137 284-448 122-258 (521)
186 PRK11010 ampG muropeptide tran 98.0 4.6E-05 1E-09 80.7 11.0 132 295-448 60-198 (491)
187 PF06609 TRI12: Fungal trichot 98.0 8.3E-05 1.8E-09 79.8 12.7 148 229-409 310-459 (599)
188 PRK10133 L-fucose transporter; 97.9 0.00013 2.8E-09 76.2 13.0 112 284-414 65-176 (438)
189 KOG0254 Predicted transporter 97.8 0.00011 2.4E-09 78.3 11.4 142 283-448 92-233 (513)
190 COG3104 PTR2 Dipeptide/tripept 97.8 5.3E-05 1.1E-09 78.5 8.5 177 227-438 19-200 (498)
191 KOG2816 Predicted transporter 97.8 0.0015 3.2E-08 68.6 19.3 257 52-416 127-391 (463)
192 TIGR00792 gph sugar (Glycoside 97.8 5.3E-05 1.1E-09 78.2 7.4 149 284-448 39-198 (437)
193 PRK11902 ampG muropeptide tran 97.8 0.00011 2.4E-09 75.4 9.4 133 294-448 46-185 (402)
194 PTZ00207 hypothetical protein; 97.7 0.00019 4E-09 77.4 10.2 130 295-444 76-205 (591)
195 PF03092 BT1: BT1 family; Int 97.6 0.00048 1E-08 71.8 12.3 146 287-446 262-414 (433)
196 TIGR00889 2A0110 nucleoside tr 97.6 0.0004 8.8E-09 71.9 11.2 168 233-447 6-182 (418)
197 KOG4686 Predicted sugar transp 97.6 0.00056 1.2E-08 66.2 10.4 174 227-439 262-438 (459)
198 COG0738 FucP Fucose permease [ 97.6 0.0016 3.4E-08 66.1 14.1 54 42-95 109-162 (422)
199 TIGR00806 rfc RFC reduced fola 97.6 0.00026 5.7E-09 73.7 8.9 134 287-445 69-203 (511)
200 PF06609 TRI12: Fungal trichot 97.5 0.00021 4.6E-09 76.7 8.1 137 284-447 82-221 (599)
201 COG2807 CynX Cyanate permease 97.5 0.0028 6E-08 63.5 15.0 263 38-421 100-363 (395)
202 PF13347 MFS_2: MFS/sugar tran 97.5 0.00015 3.1E-09 75.3 6.2 148 285-446 42-200 (428)
203 KOG3764 Vesicular amine transp 97.5 0.00069 1.5E-08 68.4 10.5 270 49-440 171-450 (464)
204 KOG2325 Predicted transporter/ 97.5 0.00078 1.7E-08 70.4 10.8 98 44-148 137-238 (488)
205 TIGR00805 oat sodium-independe 97.4 0.00024 5.2E-09 77.7 6.9 158 286-447 74-283 (633)
206 KOG0569 Permease of the major 97.4 0.0016 3.4E-08 68.4 12.2 140 286-448 66-208 (485)
207 PF00083 Sugar_tr: Sugar (and 97.4 8.6E-06 1.9E-10 84.6 -5.0 143 285-447 51-194 (451)
208 KOG2816 Predicted transporter 97.4 0.0014 3E-08 68.8 11.1 135 290-451 72-206 (463)
209 KOG2563 Permease of the major 97.3 0.0025 5.4E-08 65.5 12.5 136 291-445 312-451 (480)
210 PRK11128 putative 3-phenylprop 97.3 0.0016 3.6E-08 66.2 11.1 135 284-447 43-181 (382)
211 TIGR00806 rfc RFC reduced fola 97.3 0.004 8.8E-08 65.1 13.6 270 57-410 134-408 (511)
212 COG2223 NarK Nitrate/nitrite t 97.2 0.0031 6.6E-08 64.3 11.5 173 235-447 23-199 (417)
213 TIGR00902 2A0127 phenyl propri 97.2 0.0034 7.4E-08 64.0 12.2 120 285-432 44-167 (382)
214 KOG3626 Organic anion transpor 97.2 0.0029 6.3E-08 69.0 11.8 110 31-142 231-345 (735)
215 PTZ00207 hypothetical protein; 97.2 0.0061 1.3E-07 65.9 14.2 71 55-143 138-209 (591)
216 PRK11462 putative transporter; 97.0 0.003 6.4E-08 66.4 9.7 119 285-419 50-174 (460)
217 TIGR02718 sider_RhtX_FptX side 97.0 0.0033 7.2E-08 64.1 9.5 147 281-447 38-187 (390)
218 PRK09669 putative symporter Ya 97.0 0.0015 3.3E-08 68.0 7.1 147 284-446 49-206 (444)
219 PRK10429 melibiose:sodium symp 97.0 0.0018 3.9E-08 68.2 7.4 148 284-447 46-204 (473)
220 KOG2533 Permease of the major 96.9 0.0065 1.4E-07 64.3 10.7 143 284-448 85-231 (495)
221 TIGR00880 2_A_01_02 Multidrug 96.9 0.0019 4.1E-08 54.4 5.3 83 44-141 58-140 (141)
222 KOG2504 Monocarboxylate transp 96.8 0.0027 5.8E-08 67.6 6.8 137 284-445 85-222 (509)
223 PRK15462 dipeptide/tripeptide 96.7 0.03 6.6E-07 59.3 14.5 118 284-414 312-437 (493)
224 COG2211 MelB Na+/melibiose sym 96.7 0.0067 1.4E-07 63.3 9.2 139 288-442 56-205 (467)
225 KOG2532 Permease of the major 96.7 0.0072 1.6E-07 63.6 9.0 134 284-439 77-211 (466)
226 PF03825 Nuc_H_symport: Nucleo 96.2 0.046 1E-06 56.4 11.8 79 233-327 6-85 (400)
227 PF05631 DUF791: Protein of un 96.2 0.031 6.8E-07 56.1 9.7 136 291-450 80-222 (354)
228 PF01770 Folate_carrier: Reduc 96.2 0.17 3.8E-06 52.1 15.4 79 53-145 109-187 (412)
229 PF03137 OATP: Organic Anion T 96.1 0.0014 3E-08 70.2 -0.1 62 34-95 138-199 (539)
230 PF05978 UNC-93: Ion channel r 96.1 0.019 4.1E-07 51.3 7.1 102 281-405 38-139 (156)
231 PF01306 LacY_symp: LacY proto 96.0 0.021 4.4E-07 59.0 7.7 177 230-443 8-187 (412)
232 PRK09848 glucuronide transport 96.0 0.025 5.5E-07 58.9 8.5 39 284-322 48-91 (448)
233 KOG0252 Inorganic phosphate tr 95.9 0.011 2.5E-07 60.9 5.5 102 291-407 95-196 (538)
234 TIGR00788 fbt folate/biopterin 95.9 0.046 1E-06 57.6 10.2 87 359-448 126-212 (468)
235 COG0738 FucP Fucose permease [ 95.9 0.075 1.6E-06 54.2 10.9 107 291-416 59-165 (422)
236 COG2807 CynX Cyanate permease 95.7 0.074 1.6E-06 53.5 10.0 121 293-438 60-180 (395)
237 KOG2563 Permease of the major 95.5 0.15 3.4E-06 52.6 11.7 146 238-417 57-202 (480)
238 PF03209 PUCC: PUCC protein; 94.6 0.22 4.7E-06 51.0 9.8 116 297-418 31-152 (403)
239 PF13000 Acatn: Acetyl-coenzym 94.5 1.8 4E-05 45.6 16.2 33 58-90 139-171 (544)
240 PF11700 ATG22: Vacuole efflux 93.4 0.63 1.4E-05 49.3 10.9 39 284-322 74-112 (477)
241 PF03092 BT1: BT1 family; Int 93.2 0.21 4.5E-06 52.2 6.9 131 298-446 42-177 (433)
242 PF06813 Nodulin-like: Nodulin 91.6 1.6 3.5E-05 42.0 10.2 104 297-416 53-156 (250)
243 COG0477 ProP Permeases of the 90.9 0.48 1E-05 44.4 5.8 113 284-415 43-156 (338)
244 KOG3810 Micronutrient transpor 90.3 2.2 4.7E-05 43.1 9.7 83 353-440 326-417 (433)
245 KOG0253 Synaptic vesicle trans 89.9 0.96 2.1E-05 46.0 7.0 128 293-447 126-253 (528)
246 KOG2325 Predicted transporter/ 89.6 3.1 6.6E-05 44.0 10.9 143 284-445 75-230 (488)
247 TIGR00939 2a57 Equilibrative N 89.3 1.9 4.1E-05 45.1 9.2 114 284-409 49-162 (437)
248 PF12832 MFS_1_like: MFS_1 lik 88.5 1.4 3E-05 34.3 5.7 67 234-316 5-71 (77)
249 TIGR00926 2A1704 Peptide:H+ sy 86.6 3.7 7.9E-05 45.3 9.7 140 288-439 31-177 (654)
250 COG2270 Permeases of the major 85.5 6.9 0.00015 40.5 10.3 147 285-448 63-224 (438)
251 PF02487 CLN3: CLN3 protein; 85.1 16 0.00036 37.7 13.0 60 353-414 335-394 (402)
252 KOG3762 Predicted transporter 82.0 1.3 2.8E-05 47.1 3.4 116 300-439 426-542 (618)
253 PF06963 FPN1: Ferroportin1 (F 81.2 29 0.00062 36.3 13.1 104 289-409 302-410 (432)
254 KOG3574 Acetyl-CoA transporter 80.0 35 0.00075 35.2 12.5 51 42-92 138-188 (510)
255 TIGR00769 AAA ADP/ATP carrier 80.0 23 0.0005 37.5 12.0 47 46-92 137-184 (472)
256 KOG3098 Uncharacterized conser 79.1 51 0.0011 34.7 14.1 101 301-409 303-406 (461)
257 PF00854 PTR2: POT family; In 77.9 4.6 0.0001 40.9 6.0 90 32-136 28-120 (372)
258 KOG3762 Predicted transporter 72.8 13 0.00028 39.8 7.6 46 50-95 472-518 (618)
259 KOG3098 Uncharacterized conser 70.9 23 0.00051 37.2 9.1 67 285-373 55-121 (461)
260 PF01770 Folate_carrier: Reduc 69.4 50 0.0011 34.2 11.0 104 231-369 7-110 (412)
261 PF03219 TLC: TLC ATP/ADP tran 65.9 76 0.0016 33.8 11.9 33 57-89 164-196 (491)
262 KOG4686 Predicted sugar transp 65.3 19 0.00042 35.6 6.5 91 42-144 357-447 (459)
263 PF06963 FPN1: Ferroportin1 (F 63.3 1.3E+02 0.0028 31.5 12.8 79 230-324 3-82 (432)
264 PF06645 SPC12: Microsomal sig 60.8 13 0.00029 28.8 3.8 54 70-144 5-58 (76)
265 KOG4112 Signal peptidase subun 59.2 14 0.00029 29.7 3.5 26 70-95 20-45 (101)
266 TIGR00926 2A1704 Peptide:H+ sy 56.3 22 0.00047 39.3 5.9 94 34-137 82-180 (654)
267 PF00854 PTR2: POT family; In 54.8 27 0.00058 35.3 6.0 84 355-440 35-119 (372)
268 TIGR01272 gluP glucose/galacto 54.0 14 0.00031 36.4 3.8 93 355-449 12-119 (310)
269 PRK03612 spermidine synthase; 49.0 55 0.0012 35.1 7.5 62 377-440 130-193 (521)
270 KOG1479 Nucleoside transporter 42.0 1.8E+02 0.0039 30.1 9.5 39 34-72 114-152 (406)
271 KOG4332 Predicted sugar transp 41.7 40 0.00086 33.2 4.4 128 292-440 84-216 (454)
272 COG3104 PTR2 Dipeptide/tripept 39.6 82 0.0018 33.5 6.7 102 15-136 80-203 (498)
273 PRK10692 hypothetical protein; 39.0 38 0.00083 26.8 3.2 56 308-373 2-58 (92)
274 PF06813 Nodulin-like: Nodulin 37.0 34 0.00073 33.0 3.3 66 63-145 122-187 (250)
275 PF06779 DUF1228: Protein of u 35.7 1.4E+02 0.003 23.7 6.0 49 283-331 30-78 (85)
276 PF11947 DUF3464: Protein of u 30.8 98 0.0021 27.4 4.8 39 358-406 107-145 (153)
277 TIGR00769 AAA ADP/ATP carrier 29.4 2.6E+02 0.0057 29.6 8.7 116 294-415 58-189 (472)
278 PF10762 DUF2583: Protein of u 28.1 58 0.0013 25.6 2.6 56 308-373 2-58 (89)
279 TIGR00986 3a0801s05tom22 mitoc 26.0 1.6E+02 0.0036 25.7 5.3 34 60-93 56-89 (145)
280 PF05631 DUF791: Protein of un 24.5 7.6E+02 0.016 25.1 13.0 24 40-63 124-147 (354)
281 KOG2601 Iron transporter [Inor 23.7 88 0.0019 32.3 3.6 48 42-96 398-445 (503)
282 PF02990 EMP70: Endomembrane p 23.4 5E+02 0.011 27.8 9.6 27 283-309 300-326 (521)
283 COG4452 CreD Inner membrane pr 22.9 3.4E+02 0.0074 27.8 7.5 73 292-379 334-407 (443)
284 KOG4830 Predicted sugar transp 22.6 1.6E+02 0.0035 28.9 5.0 54 354-407 294-347 (412)
285 PF03137 OATP: Organic Anion T 22.4 30 0.00065 37.3 0.1 158 286-447 44-256 (539)
286 PF04341 DUF485: Protein of un 21.9 2.4E+02 0.0052 22.4 5.3 32 232-263 19-50 (91)
287 PF02487 CLN3: CLN3 protein; 21.0 3.1E+02 0.0068 28.4 7.2 35 291-326 70-105 (402)
288 PF04281 Tom22: Mitochondrial 20.7 2E+02 0.0043 25.0 4.8 30 60-89 58-87 (137)
289 COG0477 ProP Permeases of the 20.3 2.1E+02 0.0046 26.0 5.5 71 47-130 104-176 (338)
No 1
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=100.00 E-value=9.3e-59 Score=481.91 Aligned_cols=388 Identities=46% Similarity=0.885 Sum_probs=324.2
Q ss_pred eeehhhhhchhhHHhhhcCCcccccccCCCceeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccch--hhHHHHHHH
Q 012918 3 SVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQR--NSANAIFCS 80 (453)
Q Consensus 3 ~i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr--~~a~~~~~~ 80 (453)
++++++++++++++..++|+.+ +..+++.++.++++++++|++.|.+|.|.||+++|.+|++|| +.+++++++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~-----~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~ 159 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLD-----KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSF 159 (477)
T ss_pred HHHHHHHHhCchhhhhcccccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 3567888899988888877532 345577788889999999999999999999999999999876 589999999
Q ss_pred HHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCC
Q 012918 81 WMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLD 160 (453)
Q Consensus 81 ~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~ 160 (453)
+.++|+++||.+|++++|.+.+++..++.++..+.++|.+|.++++.++++++++++++||+|...++..+++|
T Consensus 160 ~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~------ 233 (477)
T TIGR01301 160 FMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE------ 233 (477)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh------
Confidence 99999999999999865677777766666677788999999999999999999999999998864322110000
Q ss_pred CcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHH
Q 012918 161 DPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL 240 (453)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~ 240 (453)
.+ +.+ +.+....++++++++++|||++|++|++|||
T Consensus 234 ----------------------------------~~---~~~-------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff 269 (477)
T TIGR01301 234 ----------------------------------AA---PPS-------KHGEEAFFGELFGAFKYLPRPVWILLLVTCL 269 (477)
T ss_pred ----------------------------------cc---ccc-------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 00 000 0112346889999999999999999999999
Q ss_pred HHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC-cchhhHHHHHH
Q 012918 241 TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRLVWAISNFI 319 (453)
Q Consensus 241 ~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g-rr~l~~~g~~~ 319 (453)
+|+||+++++|.|||||+++|+++|.+ .+.|++|+|+|+|+++++++++.++|++++++++|+| ||++|.+|+++
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~----~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~ 345 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQ----GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNII 345 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999999999999999997643 3589999999999999999999999999999999998 58999999999
Q ss_pred HHHHHHHHHHHhhhhhcc-ccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHH
Q 012918 320 VFACMATTAIISVISVRE-YSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNL 398 (453)
Q Consensus 320 ~~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~ 398 (453)
.++|++.+.+++....|. ..+.....++++...++.+++++++.|++|++++|+||+++++++|++.|++|+|||++|+
T Consensus 346 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~ 425 (477)
T TIGR01301 346 LAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNL 425 (477)
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHH
Confidence 999999988877432110 0000001112233346888999999999999999999999999999877899999999999
Q ss_pred HHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCC
Q 012918 399 AIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (453)
Q Consensus 399 ~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g 449 (453)
++++||+++++..|++.+.+|+++.++|.++|++++++++++.+.+|+++.
T Consensus 426 ~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 426 AIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999889999888889999999999999999999999875
No 2
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-53 Score=422.14 Aligned_cols=381 Identities=44% Similarity=0.822 Sum_probs=300.9
Q ss_pred CEeeehhhhhchhhHHhhhcCCcccccccCCCceeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccchhh-HHHHHH
Q 012918 1 MISVAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNS-ANAIFC 79 (453)
Q Consensus 1 ~~~i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~-a~~~~~ 79 (453)
+++++|.+++|+.||+..++|... ...|+++++++++|+|++|++.|.+|.|+|||+.|.+.+++|.+ +|++++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~-----~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~ 185 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNER-----KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS 185 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcc-----cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence 467899999999999999999863 23789999999999999999999999999999999999887777 999999
Q ss_pred HHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCC
Q 012918 80 SWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLL 159 (453)
Q Consensus 80 ~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l 159 (453)
+|+++|+++||.+|+..+|++.++|+....+...+.+.|..|...+....+.....++...|+|....+...
T Consensus 186 ~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~-------- 257 (498)
T KOG0637|consen 186 FFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTA-------- 257 (498)
T ss_pred HHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCcccc--------
Confidence 999999999999997778999988877777777777888877777766666655555555555443221000
Q ss_pred CCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHH
Q 012918 160 DDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMA 239 (453)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f 239 (453)
. .+ .....-+-+++.++++||+++|.+|+++.
T Consensus 258 ----------------------------------~------~~--------~~~~~~~~e~fG~~~~mpr~m~~L~i~~l 289 (498)
T KOG0637|consen 258 ----------------------------------R------SK--------SSKLPFLLEIFGALKVMPRPMRMLLIVTL 289 (498)
T ss_pred ----------------------------------c------cc--------ccCcchHHHHhchHhhCChhHHHHHHHHH
Confidence 0 00 00111223666788899999999999999
Q ss_pred HHHHhhhhhhhcccccceeeeecCCCCCC--ChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC-cchhhHHH
Q 012918 240 LTWLSWFPFFLFDTDWMGREVYHGDPKGN--DHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRLVWAIS 316 (453)
Q Consensus 240 ~~w~g~~~~~~y~t~~vg~~if~g~p~~~--~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g-rr~l~~~g 316 (453)
+.|+||+++++|+|||||+++|+|||+++ +++.+.||+||++|||++++|+++..++|+..+++.||+| ||+.|...
T Consensus 290 ltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~ 369 (498)
T KOG0637|consen 290 LTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGV 369 (498)
T ss_pred HHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehh
Confidence 99999999999999999999999999985 4789999999999999999999999999999999999999 45544444
Q ss_pred H-HHHHHHHHHHHHHhhhhh-ccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeeh
Q 012918 317 N-FIVFACMATTAIISVISV-REYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (453)
Q Consensus 317 ~-~~~~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~g 394 (453)
+ +..++++.++........ +....+... .+....++.++..+...|+.++++.|+||++-+....+++|++|+++|
T Consensus 370 ~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~--~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~g 447 (498)
T KOG0637|consen 370 NAFGLATGLAGLVLNTYVVLSHRSTAGILS--SPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLG 447 (498)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhcceee--cchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceee
Confidence 4 444555544433222211 100000000 013345677888899999999999999999999888888899999999
Q ss_pred hhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 395 VLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 395 i~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
++|+++++||++++...|++++.+|+.+...|...++..+++.+..++..
T Consensus 448 vln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~al~v~ 497 (498)
T KOG0637|consen 448 VLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIVALLVL 497 (498)
T ss_pred eeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHHheEec
Confidence 99999999999999999999999999887777777777777666554433
No 3
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.9e-27 Score=243.35 Aligned_cols=340 Identities=15% Similarity=0.159 Sum_probs=240.9
Q ss_pred HHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHH
Q 012918 41 VIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAA 120 (453)
Q Consensus 41 v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~ 120 (453)
++|=.++.++....++..+.|+.|.+|++.||.....+++...+|.++|..++. +++ +++ ...|.+.
T Consensus 120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l----~~i----lGt-----~~~W~~l 186 (485)
T KOG0569|consen 120 ILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL----PSL----LGT-----EDLWPYL 186 (485)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc----HHh----cCC-----CcchHHH
Confidence 366667778888899999999999999999999999999999999999987773 222 222 2579999
Q ss_pred HHHHHHHHHHHhhheeeEeecccCCCCC-CCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhh-c
Q 012918 121 FLVAVVFLTLCALVTIYFADEVPLTVNQ-PNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKH-I 198 (453)
Q Consensus 121 f~i~~i~~~i~~~it~~~v~E~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 198 (453)
+.+..++.++. ++.+.++||+|+|... +++++||++. +++.++.. +++++.++ .
T Consensus 187 ~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~~~~~A~~s--------l~~y~G~~---------------~~~~~~e~~~ 242 (485)
T KOG0569|consen 187 LAFPLIPALLQ-LALLPFLPESPKYLLIKKGDEEEARKA--------LKFYRGKE---------------DVEAEIEEML 242 (485)
T ss_pred HHHHHHHHHHH-HHHHhcCCCCcchHHHHcCCHHHHHHH--------HHHHhCCC---------------cchhHHHHHH
Confidence 99999997554 5568899999999876 5555455332 22222110 00111110 0
Q ss_pred cccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHH-HHhhhhhhhcccccceeeeecCCCCCCChhhhhHHh
Q 012918 199 SKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALT-WLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQ 277 (453)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~-w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~ 277 (453)
+++++.+ .++..+.++++++++. ++.+++...+.+++.+ ..|.++..+|.|+.+.+..+..
T Consensus 243 ~e~~~~~---~~~~~~~sl~~~~~~~-~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-------------- 304 (485)
T KOG0569|consen 243 REIEEEE---LEKKKQISLRQLLKNP-TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-------------- 304 (485)
T ss_pred HHHHHhc---cccccCCcHHHHhcCc-chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH--------------
Confidence 1111111 0112456788888763 3444455566666655 6699999999999655433321
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHH
Q 012918 278 GVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (453)
Q Consensus 278 gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (453)
..+.++....++++.+.+++.++++||+|||++++.+..+++++.+.+....... +... .+. .+....+.+
T Consensus 305 --~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~-~~~~----~~~--~y~~i~~~~ 375 (485)
T KOG0569|consen 305 --EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS-NSFG----SWL--SYLCIAAIF 375 (485)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh----hHH--HHHHHHHHH
Confidence 2334677778899999999999999999999999999888888776554433221 1100 000 111234445
Q ss_pred HHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHH
Q 012918 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (453)
Q Consensus 358 ~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa 437 (453)
.+...++++-|+.-|. +.+|.+|.+ .+...+++....+|+.++++...++++-+.+|.+ .|+.+.+.+.+.+
T Consensus 376 ~~~~~f~~G~gpi~~f---i~aELf~~~--~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~---~filF~i~~~~~~ 447 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWF---IGAELFPQS--ARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY---VFILFVIPLAIFL 447 (485)
T ss_pred HHHHhhhcCCCchhHH---HHHHhCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHH
Confidence 5556677777775555 999999987 5666688999999999999999999999999963 7999999999999
Q ss_pred HHhheeccCCCCCCC
Q 012918 438 VVATLKLPHLSSNSF 452 (453)
Q Consensus 438 ~~v~~~vpet~g~~~ 452 (453)
++.++.+||||||++
T Consensus 448 i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 448 IYLYRYLPETKGRTP 462 (485)
T ss_pred HHHHHhCcccCCCCH
Confidence 999999999999986
No 4
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=221.32 Aligned_cols=342 Identities=13% Similarity=0.109 Sum_probs=233.1
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
+|=.+..++....+...+.|++|++|++.||...+..+.+..+|..+||.+++.. ++. ..+||.++
T Consensus 147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~--~~~------------~~~Wr~~~ 212 (513)
T KOG0254|consen 147 VGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT--SKV------------YAGWRIPL 212 (513)
T ss_pred HHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh--ccC------------CccHHHHH
Confidence 5556677778888899999999999999999999999999999999999999761 110 02799999
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcc-c
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHIS-K 200 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (453)
.+..++.++..+. +++.||+|+|..++++.++++..+ .++++- + ..+.+.+.++.. +
T Consensus 213 ~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l--------~~l~g~---------~----~~~~~~~~~~~~~~ 270 (513)
T KOG0254|consen 213 GLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSL--------KRLRGL---------S----PEDVEVELELLKIK 270 (513)
T ss_pred HHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHH--------HHHhCC---------C----CcchHHHHHHHHHH
Confidence 9999998766655 999999999998877655554432 122210 0 000111111100 0
Q ss_pred cccccCCCCCCCchhhHHHHHHHhccCCHHHH-HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhh
Q 012918 201 KAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMH-VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGV 279 (453)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~-~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv 279 (453)
... +......+..++++++ +.+++... .+++..|+|+.|++.+++|.++.+....++.+ .
T Consensus 271 ~~~---~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~-------------~- 331 (513)
T KOG0254|consen 271 LLV---EAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD-------------T- 331 (513)
T ss_pred HHH---hhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc-------------h-
Confidence 000 0000001112333333 23334333 45666777889999999999987554332221 0
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 280 REGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 280 ~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
.+...+.+++.++.+++...++||+|||++++.|...++++++..+........+. ..... .+++.....+++
T Consensus 332 ---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~ 404 (513)
T KOG0254|consen 332 ---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP--NSSKG--AGWLAIVFLCLF 404 (513)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC--Ccccc--hhHHHHHHHHHH
Confidence 35556677788888888899999999999999999999999987776654321110 00000 134556666677
Q ss_pred HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH-
Q 012918 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV- 438 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~- 438 (453)
...+.+++++.-|+ +.+|.+|.+.|..+ .++.....|+.+.+++..+..+.+..+. ...|..++..+.++.+
T Consensus 405 v~~f~~g~g~v~w~---~~sEifp~~~r~~~--~s~~~~~n~~~~~~v~~~~~~~~~~~~~--~~~f~~f~~~~~~~~~~ 477 (513)
T KOG0254|consen 405 IFSFAIGWGPVPWV---IVSEIFPLRLRSKG--ASLAVAVNWLWNFLISFFFPFITEALGI--GGTFGYFGGICLLSLII 477 (513)
T ss_pred HHHHhcccccchhh---hhhccCcHhHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH
Confidence 78888899887776 99999998754444 7777799999999999988887766541 1256666666666777
Q ss_pred HhheeccCCCCCCC
Q 012918 439 VATLKLPHLSSNSF 452 (453)
Q Consensus 439 ~v~~~vpet~g~~~ 452 (453)
++.+++|||||||.
T Consensus 478 fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 478 FVFFFVPETKGLTL 491 (513)
T ss_pred HheEEcccCCCCcH
Confidence 89999999999985
No 5
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.87 E-value=4.8e-25 Score=229.18 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=214.4
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+.-++....+.....|+.|.+|+++|++..++.+....+|.+++++++.. +.+.. + ..+||..+.+.
T Consensus 110 ~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~----~------~~~Wr~~~~~~ 177 (451)
T PF00083_consen 110 FLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI--VSYYS----D------NWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc----c------ccccccccccc
Confidence 445667777889999999999999999999999999999999998888764 11110 0 13699999999
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccc
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (453)
+++.++ .++..+++||+|+|..++++++||++.+++-.++... +++..++.++.++
T Consensus 178 ~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~----------------------~~~~~~~~~~~~~- 233 (451)
T PF00083_consen 178 AIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIE----------------------DEEIEEIKAEKKE- 233 (451)
T ss_pred cccccc-ccccccccccccceecccccccccccccccccccccc----------------------ccccccccccccc-
Confidence 999754 5567789999999999888888888876541111000 0000000000110
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHH-HHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMA-LTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f-~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
. .+.+.+++++++... ..+.+...+..++ .++.|++.+.+|.+..+.+.... .. .
T Consensus 234 ---~--~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~--------------~~----~ 289 (451)
T PF00083_consen 234 ---S--QESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGIS--------------NS----F 289 (451)
T ss_pred ---c--cccceeeeecccccc-ccccccccccccccccccccccccccccccccccccc--------------cc----c
Confidence 0 011134455554422 2223333333333 34667776777766643321111 10 1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHH-HHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTA-IISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
....+.++...+.+++...++||+|||++++.+..+.++++..++ ..... .+.+ +.. +........+..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~--~~~~----~~~--~~~~i~~~~l~~~~ 361 (451)
T PF00083_consen 290 LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLG--VSSS----SWW--SILSIVFLALFFAF 361 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc----ccc--ccccceeeeecccc
Confidence 222334455666677777999999999999999888888776554 11111 1100 000 11122223334455
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
++.++++..|+ +.+|++|.+.|..| +|+.+...++..++.+...+.+.+..+.. ..+.+.+++++++.+++.+
T Consensus 362 ~~~g~~~~~~~---~~~ElfPt~~R~~~--~~~~~~~~~i~~~i~~~~~~~~~~~~~~~--~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 362 FSLGWGPLPWI---YTAELFPTKVRSTG--IGLSYAVGRIGGFIIPFLFPYLFNNLGGW--GVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred ccccccccccc---cccccccccccccc--ccccccccccccccccccccccccccccc--ccchhhHHHHHHHHhheeE
Confidence 66677666555 99999998855555 88888999999999999998888777632 3788888888999998889
Q ss_pred eccCCCCCCC
Q 012918 443 KLPHLSSNSF 452 (453)
Q Consensus 443 ~vpet~g~~~ 452 (453)
++||||||+.
T Consensus 435 ~lpET~g~~l 444 (451)
T PF00083_consen 435 FLPETKGKTL 444 (451)
T ss_pred EEeeCCCCCH
Confidence 9999999985
No 6
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.85 E-value=7.3e-21 Score=201.28 Aligned_cols=354 Identities=12% Similarity=0.003 Sum_probs=197.2
Q ss_pred HHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccccc--ccccccccchh----hh---cc
Q 012918 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSW--HRWFPFLTSRA----CC---AA 113 (453)
Q Consensus 43 g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~--~~~~~~~~~~~----~~---~~ 113 (453)
+-.+..++......+..+|++|.+|+++|+++.++.+.+..+|.++|..++..... .+.... .+.. +. ..
T Consensus 121 ~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 199 (502)
T TIGR00887 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA-AADEASCTGSCVPAV 199 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccccccccchh
Confidence 33355667777888899999999999999999999999999999998877643100 000000 0000 00 00
Q ss_pred cchhhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCC-CCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccc
Q 012918 114 CGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLT-DSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESD 192 (453)
Q Consensus 114 ~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (453)
...||++|.+.+++.++.. +..+.+||+|+|...+++++ ++++.+ .+.+.+. .+
T Consensus 200 ~~~WR~~~~~~~ip~~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~--------~~~~~~~----------------~~ 254 (502)
T TIGR00887 200 DYMWRILIGFGAVPALLAL-YFRLTIPETPRYTADVAKDVEQAASDM--------SAVLQVK----------------IE 254 (502)
T ss_pred cccHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHhCcchHHHHHHH--------HHHhccc----------------cc
Confidence 1269999999999876544 45678999999976544432 222211 1111000 00
Q ss_pred hhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHH---HHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCC
Q 012918 193 ANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHV---VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGND 269 (453)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~---l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~ 269 (453)
++.++.+++++ + ++..+.+++++++.. +.++..+. ++...+.+-+.++....|.+.++.+..+..+ ++.
T Consensus 255 ~~~~~~~~~~~---~--~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~-~~~- 326 (502)
T TIGR00887 255 AEPDEVEKAST---A--VEVPKASWSDFFTHF-FKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP-AAT- 326 (502)
T ss_pred cCcccccchhc---c--ccchhhhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC-ccc-
Confidence 00000000100 0 001123466666532 11122122 2222333323334455555665543222211 000
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCc
Q 012918 270 HEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGAN 349 (453)
Q Consensus 270 ~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (453)
...|++-.........+..+...+..++.++++||+|||++++++.++.++++..+.+..... + .
T Consensus 327 --~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~------------~ 391 (502)
T TIGR00887 327 --NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-S------------T 391 (502)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-c------------h
Confidence 001111001111112233344555678889999999999999888888877776555433100 0 0
Q ss_pred hhHHHHHHHH-HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc--------
Q 012918 350 QAIKVASLVV-FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG-------- 420 (453)
Q Consensus 350 ~~~~~~~~~~-~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~-------- 420 (453)
. ......++ ..+.+.+++... +.+.+|++|.+ .+|+.+|+.+...+++.++.+.+.|.+.+..+.
T Consensus 392 ~-~~~~~~~~~~~~~~~~~~~~~---~~~~~E~~p~~--~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (502)
T TIGR00887 392 H-GFLAIYVLAQFFANFGPNATT---FIVPGEVFPTR--YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGI 465 (502)
T ss_pred h-HHHHHHHHHHHHHhcCCCchh---hhhhhccCchh--HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccc
Confidence 0 11122222 222345555444 44789999986 566669999999999999999999988774321
Q ss_pred cchhhHhHHHHHHHHHHHHhheeccCCCCCCC
Q 012918 421 GNIPAFVLASLSALAGGVVATLKLPHLSSNSF 452 (453)
Q Consensus 421 ~~~~~f~~~a~~~liaa~~v~~~vpet~g~~~ 452 (453)
+....|.++++++++++++. +++||||||+.
T Consensus 466 ~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~l 496 (502)
T TIGR00887 466 WMGHVLEIFALFMFLGILFT-LLIPETKGKSL 496 (502)
T ss_pred cchHHHHHHHHHHHHHHHHh-eEeccCCCCCH
Confidence 11236888888888887754 78899999985
No 7
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.84 E-value=4.7e-20 Score=191.15 Aligned_cols=304 Identities=19% Similarity=0.227 Sum_probs=218.9
Q ss_pred hchhhHHhhhcCCcccccccCCCceeehhHH---------------------------HHHHHHHhhcccccchhhHHHH
Q 012918 10 GFSADIGYILGDTKEHCSKFRGTRTRAAFVF---------------------------VIGFWLLDLANNTVQGPARALL 62 (453)
Q Consensus 10 ~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~---------------------------v~g~~lld~a~n~~~~p~rA~i 62 (453)
+..+++-..++|++ ++|+++||||.++.+ .+...+.|++.+..+.|..|++
T Consensus 51 ai~dp~~G~~sDr~--~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~ 128 (428)
T PF13347_consen 51 AITDPLIGYLSDRT--RTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALI 128 (428)
T ss_pred hhcCCcEEEEEeee--cccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcC
Confidence 44555555678988 699999999987431 2344468999999999999999
Q ss_pred hcCCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeec
Q 012918 63 ADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADE 141 (453)
Q Consensus 63 ~D~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E 141 (453)
+|.++ +|||.+.+++.+.+..+|.+++..+.... + ..+.++ .....|+++..+.+++.+++..++++.+||
T Consensus 129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l-~----~~~g~~---~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL-V----SWFGGG---DTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh-h----hhhccC---ccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 99998 48999999999999999997655554431 1 111111 000269999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHH
Q 012918 142 VPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLL 221 (453)
Q Consensus 142 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (453)
++....++ +++.++++.+
T Consensus 201 ~~~~~~~~--------------------------------------------------------------~~~~~~~~~~ 218 (428)
T PF13347_consen 201 RSVEVTEQ--------------------------------------------------------------EKKISLRDSL 218 (428)
T ss_pred cccccccc--------------------------------------------------------------ccccccccch
Confidence 21111100 0111223333
Q ss_pred HHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHH
Q 012918 222 TSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIE 301 (453)
Q Consensus 222 ~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~ 301 (453)
+++.+. |+++.++...++.|.++.....+...|..+ +.+.+ ........+..+.+.+.+.+.+
T Consensus 219 ~~~~~n-r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~-vl~~~---------------~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 219 RSLFRN-RPFRILLLAFFLQWLAFALMNTFLPYYFTY-VLGNE---------------GLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred hhhccc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HhcCc---------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 333333 457778888888888777555444443332 22211 1112334466777888889999
Q ss_pred HhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhccc
Q 012918 302 PMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAEL 381 (453)
Q Consensus 302 ~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~ 381 (453)
++.||+|+|+.+..+.++.+++++...+... + +.+..++...+.|++++....+|+++++|.
T Consensus 282 ~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~ 343 (428)
T PF13347_consen 282 RLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---G---------------SPWLVLILFILAGIGYGAFFVIPWAMLADV 343 (428)
T ss_pred HHHHHccceeehhhhHHHHHHHHHHHHHHHh---h---------------hHHHHHHHHHHhHhhhcccccccccccccc
Confidence 9999999999999999999888876666641 1 256677888899999999999999999999
Q ss_pred ccCC-----CCCcceeehhhHHHHHHHHHHHhhccccceecccc
Q 012918 382 TADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 382 ~p~~-----~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
.+.+ +|..|+.+|+.+++.-++|.+++.+.|.+++..|.
T Consensus 344 id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 344 IDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8743 47789999999999999999999999988777653
No 8
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.78 E-value=5.1e-18 Score=175.43 Aligned_cols=335 Identities=13% Similarity=0.088 Sum_probs=213.4
Q ss_pred hhhhchhhHHhhhcCCcccccccCCCceeehhHH---HHHH----------------------HHHhhcccccchhhHHH
Q 012918 7 IIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVF---VIGF----------------------WLLDLANNTVQGPARAL 61 (453)
Q Consensus 7 l~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~---v~g~----------------------~lld~a~n~~~~p~rA~ 61 (453)
+.-+.++.+...++|+. ++|+++||||.+... .++. .+++.+....+.|..++
T Consensus 46 i~~~i~~p~~G~lsDr~--~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 123 (437)
T TIGR00792 46 ILDAITDPIMGNIVDRT--RTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSL 123 (437)
T ss_pred HHHHhccchheEeeecC--CCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhC
Confidence 34456677777889987 578899999876431 1111 12344444556788999
Q ss_pred HhcCCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEee
Q 012918 62 LADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFAD 140 (453)
Q Consensus 62 i~D~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~ 140 (453)
.+|.++ +++|++++++.+.+..+|+.++..+... ....+.+. .....||+++.+.+++.+++.++..+.+|
T Consensus 124 ~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~-----l~~~~~~~---~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 195 (437)
T TIGR00792 124 VPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP-----LVSYFGGG---DDKFGWFMFALVLALIGVVSLIICFFGTK 195 (437)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCC---cccccHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 999985 6899999999999999988776655422 11100000 00136999998888887777777778888
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHH
Q 012918 141 EVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNL 220 (453)
Q Consensus 141 E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (453)
|++....++ + +++.++++.
T Consensus 196 e~~~~~~~~-~------------------------------------------------------------~~~~~~~~~ 214 (437)
T TIGR00792 196 ERYSEIPKN-I------------------------------------------------------------EKKLSLKQI 214 (437)
T ss_pred ecCCCCCcc-c------------------------------------------------------------ccCCCHHHH
Confidence 865210000 0 000112333
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 012918 221 LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (453)
Q Consensus 221 ~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~ 300 (453)
++...+ .|.++.+++..++.+.+++....+.+.|..+ .++ ++ + ..+ +...+..+..++.+.+.
T Consensus 215 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-----------~--~~~-~~~~~~~i~~ii~~~~~ 277 (437)
T TIGR00792 215 FKALFK-NDQLLILCLAYLFYNLAFNIKNGVQVYYFTY-VLG-DP-----------E--LFS-YMGSIAIVAGLIGVLLF 277 (437)
T ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHHHHcchhheeEee-ecC-Ch-----------H--HHH-HHHHHHHHHHHHHHHHH
Confidence 333222 2456777888888888776655444444322 332 21 1 112 23344567778888999
Q ss_pred HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcc
Q 012918 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (453)
Q Consensus 301 ~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise 380 (453)
+++.||+|+|+++..+..+.+++++...+.. + .....++.+.+.|++++....+++++++|
T Consensus 278 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (437)
T TIGR00792 278 PRLVKKFGRKILFAGGILLMVLGYLIFFFAG----S---------------NLPLILVLIILAGFGQNFVTGLVWALVAD 338 (437)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----h---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998877776665444332 1 12334456667889999888999999998
Q ss_pred cccC-----CCCCcceeehhhHHHHHHHHHHHhhccccceecccccch-------------hhHhHHHHHHHHHHHHhhe
Q 012918 381 LTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNI-------------PAFVLASLSALAGGVVATL 442 (453)
Q Consensus 381 ~~p~-----~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~-------------~~f~~~a~~~liaa~~v~~ 442 (453)
..+. ..|..|...|+.|.+..+++.+.+.+.|.+.+..|.... ...++.+++.+++.++..+
T Consensus 339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~ 418 (437)
T TIGR00792 339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGR 418 (437)
T ss_pred hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8752 246789999999999999999999999988776553210 1233444555555554433
Q ss_pred eccCCC
Q 012918 443 KLPHLS 448 (453)
Q Consensus 443 ~vpet~ 448 (453)
+.|.|+
T Consensus 419 ~y~l~~ 424 (437)
T TIGR00792 419 FYKLTE 424 (437)
T ss_pred HeeCcH
Confidence 566654
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.78 E-value=2.5e-18 Score=180.02 Aligned_cols=320 Identities=10% Similarity=0.044 Sum_probs=190.0
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++......+..+|++|..|+++|+++.++.+....+|.+++++++... .+...+.... ...||+.|.+.++
T Consensus 130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~------~~gWr~~f~~~~~ 202 (479)
T PRK10077 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI-ARSGDASWLN------TDGWRYMFASEAI 202 (479)
T ss_pred HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccccc------cCChHHHHHHHHH
Confidence 34555666778999999999999999999999999999999988776431 1100000000 1379999999888
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.+++. +..+++||+|.+..++++.+++++. +++.+.. ...++
T Consensus 203 ~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~--------~~~~~~~-------------------~~~~~--------- 245 (479)
T PRK10077 203 PALLFL-MLLYFVPETPRYLMSRGKQEQAEGI--------LRKIMGN-------------------TLATQ--------- 245 (479)
T ss_pred HHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHH--------HHHHcCC-------------------hhHHH---------
Confidence 876654 4577899998764333221111100 0000000 00000
Q ss_pred CCCCCCchhhHHHHHH-------HhccCCH-H-HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHh
Q 012918 207 GSFNDGPGAVLVNLLT-------SLRHLPP-A-MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQ 277 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~-------~~~~~P~-~-l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~ 277 (453)
.....++..+ ....... . ...++...+.+..+++...+|.+++..+ ++.+ .
T Consensus 246 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~--~g~~------------~ 305 (479)
T PRK10077 246 ------ALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT--LGAS------------T 305 (479)
T ss_pred ------HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH--cCCC------------C
Confidence 0000000000 0000000 0 1111223444555666666666665433 1111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHH
Q 012918 278 GVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (453)
Q Consensus 278 gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (453)
..+.+..+..++..++.+++.+++.||+|||++++.+.++++++++.+...... +. + ... ..
T Consensus 306 --~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~--~~-----------~--~~~-~~ 367 (479)
T PRK10077 306 --DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT--QA-----------P--GIV-AL 367 (479)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc--Cc-----------c--cHH-HH
Confidence 112234445667788889999999999999999999998888887666544311 10 0 011 11
Q ss_pred HHHHHhccchhh-hccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce------ecccccchhhHhHHH
Q 012918 358 VVFTLLGFPLAI-TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD------ALFGGGNIPAFVLAS 430 (453)
Q Consensus 358 ~~~~~~Gi~~a~-~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~------~~~g~~~~~~f~~~a 430 (453)
....+++++++. ...+.+++++|.+|.+ .+|+.+|+.+...++++++.+.++|.+. +..|. ...|.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~ 443 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNA--IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN--GFSYWIYG 443 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChh--HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC--ccHHHHHH
Confidence 122223333332 1234567999999975 5777799999999999999887776443 33443 34788888
Q ss_pred HHHHHHHHHhheeccCCCCCCC
Q 012918 431 LSALAGGVVATLKLPHLSSNSF 452 (453)
Q Consensus 431 ~~~liaa~~v~~~vpet~g~~~ 452 (453)
+.++++++++.+++||||+|+.
T Consensus 444 ~~~~~~~~~~~~~~~e~~~~~~ 465 (479)
T PRK10077 444 CMGVLAALFMWKFVPETKGKTL 465 (479)
T ss_pred HHHHHHHHHHHhccccCCCCCH
Confidence 8888888888888999999864
No 10
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.77 E-value=7e-19 Score=192.34 Aligned_cols=363 Identities=14% Similarity=0.141 Sum_probs=207.4
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc----ccccccccccchhhhcccchhhHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG----SWHRWFPFLTSRACCAACGNLKAA 120 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~----~~~~~~~~~~~~~~~~~~~~~r~~ 120 (453)
.+.-++.........+|+.|.+|+++|++..++.+.+..+|.+++..++... .|.... +.. .....||++
T Consensus 263 ~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~----g~~--~~~~gWR~l 336 (742)
T TIGR01299 263 LLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQM----GSA--YQFHSWRVF 336 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcc----ccc--cccccHHHH
Confidence 3556667777888999999999999999999999999999999887665321 111100 000 011369999
Q ss_pred HHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccc--hhhhhc
Q 012918 121 FLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESD--ANLKHI 198 (453)
Q Consensus 121 f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 198 (453)
+.+.+++.++++ +..+++||+|+|...+++.+++.++++.-.+.+.++.. . + +.....+ +..++.
T Consensus 337 ~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~-~--------~---~~~~~~~~~~~~~~~ 403 (742)
T TIGR01299 337 VIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKG-H--------P---EKVFSVNHIKTIHQE 403 (742)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcC-c--------h---hHHHHHHHHHHhhhh
Confidence 999999876554 55778999999987766655555444221110000000 0 0 0000000 000000
Q ss_pred c---ccccccCCCC---CCCchhhHHHHHHHhcc--CC---HHHHHHHHHHHHHHHhhhhhhhcccccceee--------
Q 012918 199 S---KKAEDTNGSF---NDGPGAVLVNLLTSLRH--LP---PAMHVVLIVMALTWLSWFPFFLFDTDWMGRE-------- 259 (453)
Q Consensus 199 ~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~P---~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~-------- 259 (453)
+ +..+...... ..........+|..++. -| +....+|++.|..-++++.+..++|+.+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~ 483 (742)
T TIGR01299 404 DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAAL 483 (742)
T ss_pred hhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0000000000 00000111122222221 12 1222355566666667777888877653220
Q ss_pred --eecCCCCC----------------------------------CC------------h--------------------h
Q 012918 260 --VYHGDPKG----------------------------------ND------------H--------------------E 271 (453)
Q Consensus 260 --if~g~p~~----------------------------------~~------------~--------------------~ 271 (453)
.+++++.. ++ . +
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 563 (742)
T TIGR01299 484 TKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEE 563 (742)
T ss_pred hccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhh
Confidence 00000000 00 0 0
Q ss_pred hhhHH------------hh-----------hhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHH
Q 012918 272 VKFYD------------QG-----------VREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTA 328 (453)
Q Consensus 272 ~~~y~------------~g-----------v~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~ 328 (453)
.+.-+ .| .....+...+.++..++..++.++++||+|||++++++.++.+++++.+.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 564 YKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred hhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 00112334556677888899999999999999999999888888776655
Q ss_pred HHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHh
Q 012918 329 IISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVS 408 (453)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s 408 (453)
+... ....+++..++|+..+....+.+++++|++|.+ .+|+.+|+.+...-++.++.+
T Consensus 644 ~~~s--------------------~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~--~Rgta~Gi~~~~~rlGaiigp 701 (742)
T TIGR01299 644 FGNS--------------------ESAMIALLCLFGGLSIAAWNALDVLTVELYPSD--KRATAFGFLNALCKAAAVLGI 701 (742)
T ss_pred HHcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5431 112222333445544444555667999999987 467779999999999999999
Q ss_pred hccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCCCCC
Q 012918 409 LGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSF 452 (453)
Q Consensus 409 ~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g~~~ 452 (453)
.+.|.+.+.. ....|.+++++.+++++++. ++|||+|+..
T Consensus 702 ~i~g~L~~~~---~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 702 LIFGSFVGIT---KAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 9988776542 23468888888888877654 5699999864
No 11
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.75 E-value=1.2e-17 Score=172.54 Aligned_cols=338 Identities=13% Similarity=0.153 Sum_probs=195.0
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccc---cccccccccccccchhhhcccchhhHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAG---ASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig---~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
.+..++.........+++.|..|+++|+++.++.+....+|.++++.++ .. +. . ...||+.|
T Consensus 135 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--~~-------~------~~~w~~~f 199 (481)
T TIGR00879 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVS--LN-------N------TLGWRIPL 199 (481)
T ss_pred HHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhc--CC-------C------CccHHHHH
Confidence 3455566666778899999999999999999999999999999999888 32 00 0 13799999
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcc--
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHIS-- 199 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 199 (453)
.+.++..++. ++..+++||+|++...+++.+++++ .+++.+.. + . +.....++..
T Consensus 200 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~---------~----~-~~~~~~~~~~~~ 256 (481)
T TIGR00879 200 GLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARK--------SLARLRGT---------S----G-EDKELLDELELI 256 (481)
T ss_pred HHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHH--------HHHHHhCC---------C----C-CcHHHHHHHHHH
Confidence 9977775544 4556778998865332221111000 00000000 0 0 0000000000
Q ss_pred ccccccCCCCCCCchhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhh
Q 012918 200 KKAEDTNGSFNDGPGAVLVNLLTSLRH-LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQG 278 (453)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~g 278 (453)
+..... +. ...+..++++++..+. .++.+...++..+....+++.+.+|.+.+..+ ++ ++.
T Consensus 257 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g------------~~~- 318 (481)
T TIGR00879 257 DIKRSI-EK--RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN--AG------------VST- 318 (481)
T ss_pred HHHHHH-HH--hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH--cC------------CCc-
Confidence 000000 00 0011123333332211 12222222333333333444444455544322 11 111
Q ss_pred hhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHH
Q 012918 279 VREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (453)
Q Consensus 279 v~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (453)
..+.+......+...+.+++.+++.||+|||+++..+.++++++++...+......+.. +... ++.......+
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~ 391 (481)
T TIGR00879 319 -DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSS-----GNVAIVFILL 391 (481)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccch-----hHHHHHHHHH
Confidence 12234555666777888899999999999999999988888777766553321100100 0000 1111122222
Q ss_pred HHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 359 VFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 359 ~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
+...++.++.+ +.+++++|..|.+ .+|+.+|+.+....+++++.+..+|.+.+..|.. ..|++.+++++++++
T Consensus 392 ~~~~~~~~~~~---~~~~~~~~~~p~~--~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 392 FIAFFAMGWGP---VPWVIVSEIFPLS--LRPKGISIAVAANWLANFIVGFLFPTMLESIGVG--GVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHccccC---eehhhhhccCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--ceehhHHHHHHHHHH
Confidence 23334444443 4445889999976 6788899999999999999999999888776633 478889999999999
Q ss_pred HhheeccCCCCCCC
Q 012918 439 VATLKLPHLSSNSF 452 (453)
Q Consensus 439 ~v~~~vpet~g~~~ 452 (453)
.+.++.||||+++.
T Consensus 465 ~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 465 FVYFFLPETKGRTL 478 (481)
T ss_pred HHheecccCCCCCh
Confidence 88888999999875
No 12
>TIGR00898 2A0119 cation transport protein.
Probab=99.75 E-value=7.6e-18 Score=177.90 Aligned_cols=316 Identities=15% Similarity=0.168 Sum_probs=189.6
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
..+.-++.........+++.|..|+++|+++.++.+....+|.+++..++... .+||+.|.+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~wr~~~~~ 248 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI------------------PDWRWLQLA 248 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHH
Confidence 34556666777888999999999999999999999988899988887766431 259999999
Q ss_pred HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccc
Q 012918 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (453)
.+++.++..+. .+.+||+|+|...+++.+++.+.+++. .+.+.. ....+..+. +.++
T Consensus 249 ~~i~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~l~~~-----~~~~~~----------------~~~~~~~~~-~~~~ 305 (505)
T TIGR00898 249 VSLPTFLFFLL-SWFVPESPRWLISQGRIEEALKILQRI-----AKINGK----------------KLPAEVLSL-SLEK 305 (505)
T ss_pred HHHHHHHHHHH-HHhcCCChHHHHHCCCHHHHHHHHHHH-----HHHcCC----------------CCCHHHHhh-hhhh
Confidence 88887655544 578999999876555433332221110 000000 000000000 0000
Q ss_pred ccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
+. +. ...+.++++++++ +.++...+..++.|+... +.+|...+.-+ .+..+ .|
T Consensus 306 ~~-~~--~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~---------~~-------- 358 (505)
T TIGR00898 306 DL-SS--SKKQYSFLDLFRT-----PNLRKTTLCLMMLWFTTA-FSYYGLVLDLG-NLGGN---------IY-------- 358 (505)
T ss_pred hh-hh--ccCCCcHHHHhCC-----hHHHHHHHHHHHHHHHHH-HHHHHHhcccc-ccCCC---------hH--------
Confidence 00 00 0012244554432 345554555555565533 33333222111 11111 12
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...+.+++.....++.+++.||+|||+.+.++.++.+++++.+.+.. ++ . ....+++..+.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----~~-----------~---~~~~~~~~~~~ 420 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----VD-----------L---YFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----CC-----------c---hHHHHHHHHHH
Confidence 222345566777788889999999999999998888777766555443 10 0 11122222333
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
+++.+....+.+++.+|.+|.+ .+|+.+|+.+....+++++.+.+.+ +.+ .+. ...+.+.+++++++++++ .+
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~--~~~~~~~~~~~~~~~~~~-~~ 493 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTV--VRNLGVGVCSTMARVGSIISPFLVY-LGE-KWL--FLPLVLFGGLALLAGILT-LF 493 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHH--HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHH--hhHHHHHHHHHHHHHHHH-Hc
Confidence 3444444455567889999986 4555699999999999999998887 432 222 236788888888887754 67
Q ss_pred ccCCCCCCC
Q 012918 444 LPHLSSNSF 452 (453)
Q Consensus 444 vpet~g~~~ 452 (453)
+||||||..
T Consensus 494 lpet~~~~l 502 (505)
T TIGR00898 494 LPETKGVPL 502 (505)
T ss_pred CcCCCCCCC
Confidence 899999875
No 13
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.71 E-value=2.7e-16 Score=165.32 Aligned_cols=313 Identities=12% Similarity=0.107 Sum_probs=199.3
Q ss_pred hhhhchhhHHhhhcCCcccccccCCCceeehhHHH---H----------------------HHHHHhhcccccchhhHHH
Q 012918 7 IIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV---I----------------------GFWLLDLANNTVQGPARAL 61 (453)
Q Consensus 7 l~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v---~----------------------g~~lld~a~n~~~~p~rA~ 61 (453)
+.=+.++++...++|++ ++|++++|||.++.++ + ...+.+++......|..|+
T Consensus 53 i~dai~dp~~G~lsD~t--~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al 130 (473)
T PRK10429 53 IWDAINDPIMGWIVNNT--RSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSL 130 (473)
T ss_pred HHHHHhhchheeehhcC--CCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhh
Confidence 34456667777889997 7899999999764321 1 1113455556677889999
Q ss_pred HhcCCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEee
Q 012918 62 LADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFAD 140 (453)
Q Consensus 62 i~D~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~ 140 (453)
++|+++ ++||.+.+++...+.++|+.++..+... .+..+.+. .....|+.+..+.++..+++.+++++..|
T Consensus 131 ~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~-----~~~~~g~~---~~~~g~~~~~~i~~~~~~~~~~~~~~~~~ 202 (473)
T PRK10429 131 VPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLP-----FVNYVGGG---DRGFGFQMFTLVLIAFFIVSTIITLRNVH 202 (473)
T ss_pred hHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHcCce
Confidence 999995 7999999999888888886665433211 00000100 00124777777777777777777777788
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHH
Q 012918 141 EVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNL 220 (453)
Q Consensus 141 E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (453)
|++..+..+.+ + +++.++++.
T Consensus 203 e~~~~~~~~~~-------------------------------------------------------~----~~~~~~~~~ 223 (473)
T PRK10429 203 EVYSSDNQVSA-------------------------------------------------------E----GSHLTLKDI 223 (473)
T ss_pred ecCCccccccc-------------------------------------------------------c----ccCCCHHHH
Confidence 86532111000 0 011234555
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 012918 221 LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (453)
Q Consensus 221 ~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~ 300 (453)
++...+. |+++.++...++.+.+......+...|+.. + .+++ + ..+ +.+.+.++..++...+.
T Consensus 224 ~~~~~~n-~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y-~-~~~~-----------~--~~~-~~~~~~~i~~ii~~~~~ 286 (473)
T PRK10429 224 VALIYKN-DQLSCLLGMALAYNIASNIINGFAIYYFTY-V-IGDA-----------D--LFP-YYLSYAGAANLVTLILF 286 (473)
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHHHHHHhhheeeEEEE-E-CCCH-----------H--HHH-HHHHHHHHHHHHHHHHH
Confidence 5544333 667777777777777666555555544332 2 2221 1 112 33344556777778888
Q ss_pred HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcc
Q 012918 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (453)
Q Consensus 301 ~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise 380 (453)
+++.||+|+|+.+.++..+..++.+...+......+ ..+..++...+.|++.+.....++++++|
T Consensus 287 ~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~l~g~~~~~~~~~~~am~ad 351 (473)
T PRK10429 287 PRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH---------------NALLIVIAGILLNIGTALFWVLQVIMVAD 351 (473)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988876655544433322111001 13334445566888888888889999999
Q ss_pred ccc-----CCCCCcceeehhhHHHHHHHHHHHhhccccceecccc
Q 012918 381 LTA-----DSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 381 ~~p-----~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
..+ ..+|..|...|..+.+.-+++.+.+.+.|.+++..|.
T Consensus 352 ~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 352 TVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 865 3357889999999999999999999999888776653
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.70 E-value=2.1e-16 Score=162.00 Aligned_cols=291 Identities=16% Similarity=0.084 Sum_probs=187.9
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+..++......+..+++.|..|+++|++++++.+....+|..++..++... .+ ..+||+.|.+.
T Consensus 111 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~~-------------~~~~~~~~~~~ 175 (406)
T PRK11551 111 LLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA--AG-------------DAAWRHIFYVG 175 (406)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cc-------------ccCHHHHHHHH
Confidence 4455566666777899999999999999999999999999999998776431 11 13699999887
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccc
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (453)
++..++...+..+..||+|.+..++.+.+
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------------------------------------------------- 204 (406)
T PRK11551 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGK--------------------------------------------------- 204 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhHHhccCcch---------------------------------------------------
Confidence 76655555555666888765432211000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
+.....+..++.. ..+..+.+++..++.....+.+..|.+.|+.+ .+.+ + ....+
T Consensus 205 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s------------~--~~~~~ 259 (406)
T PRK11551 205 -------QRAPVLRALFGEG--RATATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLS------------R--SQAGL 259 (406)
T ss_pred -------hhhhhHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC------------h--hhhhH
Confidence 0000111122110 01123334555555555555566666666543 1111 1 11113
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
....+++...+.+++.+++.||+|||+.+..+.+..+++++...+.. + .....+...+.|
T Consensus 260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g 319 (406)
T PRK11551 260 VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP----S----------------FAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC----c----------------HHHHHHHHHHHH
Confidence 44556677888899999999999999998876655555443332221 1 223334455677
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
+.++....+.++++.|.+|++ .+|+.+|+.+....+++.+.+.++|.+.+..++. ...+...+.+.+++.+++.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQ--VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRST-VGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchh--hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCch-HHHHHHHHHHHHHHHHHHHHHh
Confidence 777767777788999999976 5777799999999999999999999998775543 3456777777777777666555
Q ss_pred cCCCC
Q 012918 445 PHLSS 449 (453)
Q Consensus 445 pet~g 449 (453)
++.+.
T Consensus 397 ~~~~~ 401 (406)
T PRK11551 397 SRPSR 401 (406)
T ss_pred cchhc
Confidence 54443
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.68 E-value=1.2e-15 Score=153.47 Aligned_cols=307 Identities=16% Similarity=0.096 Sum_probs=184.6
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+..++......+..+++.|..|+++|++++++.+.+.++|..++..++... . . ..+||+.|.+.
T Consensus 90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-----~----~------~~~~~~~~~~~ 154 (399)
T TIGR00893 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI-----L----I------HFSWQWAFIIE 154 (399)
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHH-----H----H------hCCchHHHHHH
Confidence 3455566667778899999999999999999999999999999998777531 0 1 13589999988
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccc
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (453)
+++.++..++..+..||+|..+....+++ ++ ...++.+ .+.+.+ +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~-------------------~~~~~~------~- 199 (399)
T TIGR00893 155 GVLGIIWGVLWLKFIPDPPQKAKWLTEEE--KY-------IVVGGLL-------------------AEQQGK------G- 199 (399)
T ss_pred HHHHHHHHHHhhheecCCCCccccCCHHH--Hh-------hcchhhc-------------------cccccc------c-
Confidence 77766666666667787664322111000 00 0000000 000000 0
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
+ +...+...++.+++ +.++.+++..++.+.++..+..|.+.|+.+. ++.+ + ....+
T Consensus 200 --~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~--~~~~~ 255 (399)
T TIGR00893 200 --P--STPKKYQIKELLKD-----RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-RGLS------------I--LEAGF 255 (399)
T ss_pred --c--cCCCccchHHHhcC-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hccc------------H--HHhhH
Confidence 0 00112233333332 4566677788888888888888888776542 2211 1 11123
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
......+...+.+++.+++.||++||+... .......++.+...+..... +. . + .....+..+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~------~--~~~~~~~~~~~~ 322 (399)
T TIGR00893 256 MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-NY----V------N--IPYAALALVALG 322 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-cc----c------h--hHHHHHHHHHHH
Confidence 445566778888999999999999996211 11111111211111111100 00 0 0 122222233333
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
+.+.+ .....+++++|..|++ .+|+.+|+.+....+++.+.+.+.|.+.+..|.. ...|.+.+++.+++.+...+
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 323 FFGLG-AGAIGWALISDNAPGN--IAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF-AGALMVVAALALIGALSYLL 397 (399)
T ss_pred Hhchh-hhhHHHHHHHhhcChh--HHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch-hHHHHHHHHHHHHHHHHHHH
Confidence 33333 4566677999999976 6788899999999999999999999999887733 35788888888887776543
No 16
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.68 E-value=6.1e-16 Score=163.28 Aligned_cols=310 Identities=10% Similarity=0.056 Sum_probs=169.4
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+.-++......+..++++|..|+++|+++.++.+....+|..+|..+.... ..++.... .....||++|.+++
T Consensus 127 l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~-----~~~~~~~~--~~~~gWR~~f~i~~ 199 (490)
T PRK10642 127 AQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI-----STIVGEAN--FLDWGWRIPFFIAL 199 (490)
T ss_pred HHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCHHH--hcCccHHHHHHHHH
Confidence 345566667778899999999999999999999888888887776554320 00000000 00136999999988
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.++++. ....+||+|++..++++.++. .++ ...
T Consensus 200 ~~~l~~~~-~~~~~~esp~~~~~~~~~~~~---------------------------------------~~~--~~~--- 234 (490)
T PRK10642 200 PLGIIGLY-LRHALEETPAFQQHVDKLEQG---------------------------------------DRE--GLQ--- 234 (490)
T ss_pred HHHHHHHH-HHHcCCCChhHHHHHHhhhhh---------------------------------------ccc--ccc---
Confidence 76554443 356789998764321110000 000 000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+ +++.+++++++. .++.+...+...++...+++.+..|.+.|+.+ .++-+ . ..+.+.
T Consensus 235 -~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s------------~--~~~~~~ 291 (490)
T PRK10642 235 -D----GPKVSFKEIATK---HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH-NLHYS------------E--DHGVLI 291 (490)
T ss_pred -c----cccCCHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------H--HHHHHH
Confidence 0 012234555542 12233323333344445666677777877643 22211 1 112233
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
.....+...+.+.+.+++.||+|||+.+..+.+...++........ .. + + ....++...+.|+
T Consensus 292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~-~------------~---~~~~~~~~~~~g~ 354 (490)
T PRK10642 292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-NS-N------------V---IGLIFAGLLMLAV 354 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hC-C------------C---HHHHHHHHHHHHH
Confidence 4445566677788889999999999988877654333222111111 00 1 0 1122222233344
Q ss_pred chhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
..+....+-.+++.|++|.+ .+|+.+|+ .|+.. +...+.+.+.+.+.+..+.. ...+++..+.++++.+. .+++
T Consensus 355 ~~~~~~g~~~~~~~~~~p~~--~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~-~~~~~~~~~~~~i~~~~-~~~~ 429 (490)
T PRK10642 355 ILNCFTGVMASTLPAMFPTH--IRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNL-MMPAYYLMVVAVIGLIT-GVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHCCCc--cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHH-HHHh
Confidence 33333333334778899987 45555886 45544 44567777777776554422 22445556666666654 4567
Q ss_pred cCCCCCCC
Q 012918 445 PHLSSNSF 452 (453)
Q Consensus 445 pet~g~~~ 452 (453)
|||+++..
T Consensus 430 pes~~~~~ 437 (490)
T PRK10642 430 KETANRPL 437 (490)
T ss_pred ccccCCCC
Confidence 99988653
No 17
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.3e-15 Score=153.75 Aligned_cols=304 Identities=14% Similarity=0.159 Sum_probs=210.0
Q ss_pred hchhhHHhhhcCCcccccccCCCceeehhHHH-------------------------HHHHHHhhcccccchhhHHHHhc
Q 012918 10 GFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPARALLAD 64 (453)
Q Consensus 10 ~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~g~~lld~a~n~~~~p~rA~i~D 64 (453)
++.+++-..+.|++ ++|++++|||.++.++ +-..+++++......|--|+.++
T Consensus 62 Ai~DP~~G~i~D~t--~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~ 139 (467)
T COG2211 62 AITDPIMGFIVDRT--RSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPE 139 (467)
T ss_pred HHhcchheeeeccc--ccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchh
Confidence 55667767788988 7999999999876522 33446777777889999999999
Q ss_pred CCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeeccc
Q 012918 65 LSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVP 143 (453)
Q Consensus 65 ~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p 143 (453)
+++ ++||.+.++|.+...++|+.+...+-.. .-+. ..++ .....|+.+-.+-.+..++.++.+.+.++|++
T Consensus 140 iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p--lv~~---~g~~---~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 140 ITQDPQERASLTSWRMVFASLGGLLVAVLFPP--LVKL---FGGG---DKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---hCCC---cchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 998 5999999999999999997775533311 0111 1111 00135777777767776777777778899987
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHH
Q 012918 144 LTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTS 223 (453)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (453)
....+... +.+.++++.+..
T Consensus 212 ~~~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 231 (467)
T COG2211 212 VETQPTKT------------------------------------------------------------GVKLKLKDSFLL 231 (467)
T ss_pred CccccCcc------------------------------------------------------------cccccHHHHHHH
Confidence 52221100 011223322222
Q ss_pred hccCCHHHHHHHHHHHHHHHhhhh---hhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 012918 224 LRHLPPAMHVVLIVMALTWLSWFP---FFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (453)
Q Consensus 224 ~~~~P~~l~~l~~~~f~~w~g~~~---~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~ 300 (453)
+++ -|+++.+|+..++.|.+.+- +..||.+| +.+ + ++ ....+.+........++.++.
T Consensus 232 ~~~-Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y----~lg-~-----------~~--l~~~~~~~~~~~~~l~~~~~~ 292 (467)
T COG2211 232 IFK-NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTY----VLG-D-----------PE--LFAYLLLLASGAGLLIGLILW 292 (467)
T ss_pred HHc-cchHHHHHHHHHHHHHHHHHHhhhhheeEEE----EcC-C-----------hH--HHHHHHHHHHHHHHHHHHHhH
Confidence 211 24566777778888877653 34444444 222 2 12 233355556666667778899
Q ss_pred HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcc
Q 012918 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (453)
Q Consensus 301 ~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise 380 (453)
+++.+|+|+|++|.++.++.+++.+++.+... + +....++...+.+++.+..+.+|+++++|
T Consensus 293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~---~---------------~~~l~~~~~~i~~~g~~~~~~l~wam~~d 354 (467)
T COG2211 293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA---G---------------SVVLIVVALIIAGVGTGIANPLPWAMVAD 354 (467)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC---c---------------chHHHHHHHHHHHHHhhccccccHHHhcc
Confidence 99999999999999998888888877666641 1 24555566677899999999999999998
Q ss_pred ccc-----CCCCCcceeehhhHHHHHHHHHHHhhccccceecccc
Q 012918 381 LTA-----DSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 381 ~~p-----~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
... ..+|..|...|+.+++.=+++.++..+.|.++...|.
T Consensus 355 ~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 875 2358999999999999999999999988888777663
No 18
>PRK09669 putative symporter YagG; Provisional
Probab=99.64 E-value=3e-15 Score=155.90 Aligned_cols=305 Identities=13% Similarity=0.088 Sum_probs=190.4
Q ss_pred eehhhhhchhhHHhhhcCCcccccccCCCceeehhHHH-------------------------HHHHHHhhcccccchhh
Q 012918 4 VAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPA 58 (453)
Q Consensus 4 i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~g~~lld~a~n~~~~p~ 58 (453)
++.+.=+.++++...++|++ ++|++++|||.++.++ +...+.+.+......|.
T Consensus 53 i~~i~dai~dp~~G~lsD~~--~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~ 130 (444)
T PRK09669 53 VVRVLDAVTDPLMGALVDRT--RTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPY 130 (444)
T ss_pred HHHHHHHcccceeeEeeecC--CCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchH
Confidence 34455567777878889998 5899999999863211 11113344556678899
Q ss_pred HHHHhcCCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheee
Q 012918 59 RALLADLSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIY 137 (453)
Q Consensus 59 rA~i~D~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~ 137 (453)
.|+.+|..+ +++|++.+++......+|+.++..+... +...+..+ .....|+..+.+.++..+++.+++++
T Consensus 131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p-----l~~~~~~~---~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP-----LVDILGKG---DEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999985 5889999999999999998887654421 00001100 00135777777766666666666666
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhH
Q 012918 138 FADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVL 217 (453)
Q Consensus 138 ~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (453)
..||++..+.+ ++ .+....+
T Consensus 203 ~~~e~~~~~~~-~~-----------------------------------------------------------~~~~~~~ 222 (444)
T PRK09669 203 MTKERYTPEVD-NS-----------------------------------------------------------SSVWKDL 222 (444)
T ss_pred CeEEecCCCCc-CC-----------------------------------------------------------CCHHHHH
Confidence 77775321100 00 0012233
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhh---hhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHH
Q 012918 218 VNLLTSLRHLPPAMHVVLIVMALTWLSWF---PFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (453)
Q Consensus 218 ~~~~~~~~~~P~~l~~l~~~~f~~w~g~~---~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~ 294 (453)
++++++ |+++.+++..++.+.+.. .+..|+..| ..+ ++ + .+...+....+..+
T Consensus 223 ~~~~~n-----~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~----~~~-~~-----------~---~~~~~~~~~~i~~i 278 (444)
T PRK09669 223 KLLLGN-----SQWRIMFIFNVVLLTAVVTRGGATLYYVNY----VLL-RP-----------D---LATLFLVTGMIAGL 278 (444)
T ss_pred HHHhCC-----chHHHHHHHHHHHHHHHHHHhhhhheeeee----ecC-CH-----------H---HHHHHHHHHHHHHH
Confidence 333322 346666777666666553 233333332 222 21 1 11122333445556
Q ss_pred HHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcccc
Q 012918 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (453)
Q Consensus 295 i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP 374 (453)
+...+.+++.||+|+|+.+..+.++.+++.....+.. .+ .....++...+.|++.+....++
T Consensus 279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP---PS---------------NVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC---cc---------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999887665554333222221 01 13344555677899999999999
Q ss_pred chhhcccccCC-----CCCcceeehhhHHHHHHHHHHHhhccccceecccc
Q 012918 375 FAITAELTADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 375 ~aLise~~p~~-----~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
+++++|..+.+ +|..|...|+.+++.-+++.+.+.+.|.+++..|.
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999887622 35678889999999999999999999888776653
No 19
>PRK09952 shikimate transporter; Provisional
Probab=99.63 E-value=3.7e-15 Score=155.13 Aligned_cols=302 Identities=14% Similarity=0.054 Sum_probs=173.1
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++.........+|+.|..|+++|++..+..+....+|.+++..+... +...+ ... ......||.+|.+++
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~--l~~~~---~~~--~~~~~gWr~~f~~~~ 206 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSL--ISMMT---TDE--QFLSWGWRIPFLFSI 206 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHhC---CHH--HhhccChHHHHHHHH
Confidence 35666666667788999999999999999999999888988887654432 00000 000 000136999999998
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.++.. ......||+|.+..++.+. ++
T Consensus 207 ~~~l~~~-~l~~~~~es~~~~~~~~~~-------------------------------------------------~~-- 234 (438)
T PRK09952 207 VLVLIAL-WVRNGMEESAEFEQQQHEQ-------------------------------------------------AA-- 234 (438)
T ss_pred HHHHHHH-HHHHhCCCChhHHHHHhhc-------------------------------------------------cc--
Confidence 8764433 3334567766543221100 00
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+ ..+.+..+ .+++.|+....+....+.+..+.+.+..|.+.|+.+ .++-+ +. ... ..
T Consensus 235 -~----~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~g~s------------~~-~~~-~~ 291 (438)
T PRK09952 235 -A----KKRIPVIE---ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQ-NLGLP------------RE-LFL-NI 291 (438)
T ss_pred -c----cccCCHHH---HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------HH-HHH-HH
Confidence 0 00001111 112234444444444555555666566666666543 22222 11 011 12
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
..+.++...+...+.+++.||+|||+.+..+.++..++.......... + + .....++...+.|+
T Consensus 292 ~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~------------~--~~~~~~~~~~l~~~ 355 (438)
T PRK09952 292 GLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA--Q------------S--IFWIVFFSIMLANI 355 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--C------------C--hHHHHHHHHHHHHH
Confidence 223455667777888999999999999887765554433222221100 0 0 12222233344566
Q ss_pred chhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
+.+....+-+++++|.+|.+.|..| .|+ .+....++..+.+.+.+.+.+..+++....+.+.+++++++++.+ +.+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg--~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~ 432 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSG--AGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHH--HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHc
Confidence 6666556566799999998754445 555 345556788888888888877654333346777888888887765 456
Q ss_pred cCCC
Q 012918 445 PHLS 448 (453)
Q Consensus 445 pet~ 448 (453)
|||.
T Consensus 433 ~~~~ 436 (438)
T PRK09952 433 KDNQ 436 (438)
T ss_pred cccc
Confidence 7754
No 20
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.63 E-value=5.4e-15 Score=152.43 Aligned_cols=281 Identities=14% Similarity=0.097 Sum_probs=178.4
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
...+..+++.|.+|+++|++++++.+....+|..+|..+++.. .. ...|++.|.+.++..+++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l-----~~----------~~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 127 GVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL-----IA----------AGGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH-----HH----------HHhhHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999887641 10 02577888887776554443
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
.++.+||.|....++. +.
T Consensus 192 -~~~~l~~~~~~~~~~~-------------------------------------------------------------~~ 209 (417)
T PRK10489 192 -PLLRLPALPPPPQPRE-------------------------------------------------------------HP 209 (417)
T ss_pred -HHHhCCCCCCCCcccc-------------------------------------------------------------cc
Confidence 3556676542110000 00
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
....++-++..++-| .++.+.+..++ +.....+..+.+.|+.+ .++.++ ....+.+..+++..
T Consensus 210 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~p~~~~~-~~g~~~--------------~~~g~~~~~~~~g~ 272 (417)
T PRK10489 210 LRSLLAGFRFLLASP-VVGGIALLGGL-LTMASAVRVLYPALADE-VWQMGA--------------AQIGLLYAAVPLGA 272 (417)
T ss_pred hHHHHHHHHHHHcCh-HHHHHHHHHHH-HHHHHhHHHhhHHHHHh-ccCCCh--------------hHhHHHHHHHHHHH
Confidence 001111122222223 23333333332 12223344455655543 233221 11123444566777
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.+.+++.+++.||.++++.+..+.++.+++++...+.. ......+...+.|++.+....+
T Consensus 273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~ 332 (417)
T PRK10489 273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--------------------MWILAVLCLALFGYLSAISSLL 332 (417)
T ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999997777777777666665554333221 1333444555677777766666
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCCCCC
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSNSF 452 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g~~~ 452 (453)
.++++.|..|++ .+|+.+|+.+....+++.+.+.+.|.+.+..|.. ..+...+++.++.++++...+||+||++.
T Consensus 333 ~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 333 QYTLLQTQTPDE--MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV--ASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred HHHHHHhhCCHH--HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 677889999875 5777899999999999999999999999888754 36777777777777777788999999864
No 21
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.63 E-value=1.1e-14 Score=151.12 Aligned_cols=296 Identities=11% Similarity=0.032 Sum_probs=158.4
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++.........+|++|..|+++|+++.++.+.....|.+++..++... .... .+.... ...||++|.++++
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~--~~~~---~~~~~~--~~gWr~~F~i~~~ 206 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL--QQTL---EDAELR--EWGWRIPFALGAV 206 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHhC---CHHHHh--ccchHHHHHHHHH
Confidence 34555566777899999999999999999999888888888877654321 1010 000000 1369999999888
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.++... .....||+|.++.++ .
T Consensus 207 ~~ll~~~-~~~~~~e~~~~~~~~----------------------------------------------------~---- 229 (432)
T PRK10406 207 LAVVALW-LRRQLDETSQQETRA----------------------------------------------------L---- 229 (432)
T ss_pred HHHHHHH-HHhcCCCCchHHHhh----------------------------------------------------h----
Confidence 8655433 233456554321000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHH-HHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMAL-TWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~-~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
.+..++++++++ +..+.+++..++ ...+++.+..|.++|+.+. ++-+ .. ..+ ..
T Consensus 230 -----~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s------------~~-~~~-~~ 284 (432)
T PRK10406 230 -----KEAGSLKGLWRN-----RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMH------------AN-VAS-GI 284 (432)
T ss_pred -----cccccHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC------------HH-HHH-HH
Confidence 011134555542 233334444333 3455666667777776432 2211 10 111 22
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
..+..+...+...+.+++.||+|||+...++.++.+++.......... .+ + ....+.++...++
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~---~~~~~~~~~~~~~ 348 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN--VS-----------S---PYAAFGLVMCALL 348 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc--CC-----------c---HHHHHHHHHHHHH
Confidence 333444556667778999999999998776554433322211111100 00 0 1111111111111
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHH-HHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l-~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
..+....+..++++|.+|.+ .+|+.+|+.+....+ .....+.+.+ +++..|.. ...+.+.+++++++.+...+
T Consensus 349 ~~~~~~~~~~~~~~e~fp~~--~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~-~~~~~~~~~~~~i~~~~~~~-- 422 (432)
T PRK10406 349 IVSFYTSISGILKAEMFPAQ--VRALGVGLSYAVANALFGGSAEYVAL-SLKSIGME-TAFFWYVTLMAVVAFLVSLM-- 422 (432)
T ss_pred HHHHHHHHHHHHHHHHCCCC--ccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCC-cHHHHHHHHHHHHHHHHHHH--
Confidence 22222223345789999986 566668887654332 2333445455 34445543 23566677777777765543
Q ss_pred cCCCCCCCC
Q 012918 445 PHLSSNSFR 453 (453)
Q Consensus 445 pet~g~~~~ 453 (453)
.+++||+-|
T Consensus 423 l~~~~~~~~ 431 (432)
T PRK10406 423 LHRKGKGMR 431 (432)
T ss_pred hhhcccccC
Confidence 577898876
No 22
>PRK11462 putative transporter; Provisional
Probab=99.62 E-value=1.8e-14 Score=151.07 Aligned_cols=297 Identities=14% Similarity=0.115 Sum_probs=182.5
Q ss_pred hchhhHHhhhcCCcccccccCCCceeehhHHH-------------------------HHHHHHhhcccccchhhHHHHhc
Q 012918 10 GFSADIGYILGDTKEHCSKFRGTRTRAAFVFV-------------------------IGFWLLDLANNTVQGPARALLAD 64 (453)
Q Consensus 10 ~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v-------------------------~g~~lld~a~n~~~~p~rA~i~D 64 (453)
+.++++-..++|++ ++|++++|||.++.++ +...+++.+.-....|..|+.+|
T Consensus 59 ai~Dp~~G~~~D~t--~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~ 136 (460)
T PRK11462 59 AISDPCMGLLADRT--RSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGV 136 (460)
T ss_pred HHHhhhheehhccC--CCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 56777777889998 7899999999765321 22223566677788899999999
Q ss_pred CCC-ccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeeccc
Q 012918 65 LSG-PDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVP 143 (453)
Q Consensus 65 ~~p-~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p 143 (453)
+++ ++||.+..++.+....+|..++..+... ......++ .....|+....+.+++.+++..+.....||++
T Consensus 137 lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p-----lv~~~g~~---~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~ 208 (460)
T PRK11462 137 ITNDPTQRISLQSWRFVLATAGGMLSTVLMMP-----LVNLIGGD---NKPLGFQGGIAVLSVVAFMMLAFCFFTTKERV 208 (460)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCC---chhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence 999 5999999999999999888777655421 00001110 00124676666666666677766666667753
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHH
Q 012918 144 LTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTS 223 (453)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (453)
..+.+ +.++++.++.
T Consensus 209 ~~~~~-----------------------------------------------------------------~~~~~~~l~~ 223 (460)
T PRK11462 209 EAPPT-----------------------------------------------------------------TTSMREDLRD 223 (460)
T ss_pred CCCcc-----------------------------------------------------------------CCCHHHHHHH
Confidence 21100 0012222222
Q ss_pred hccCCHHHHHHHHHHHHHHHh---hhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhH
Q 012918 224 LRHLPPAMHVVLIVMALTWLS---WFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLI 300 (453)
Q Consensus 224 ~~~~P~~l~~l~~~~f~~w~g---~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~ 300 (453)
..+ .|+++.++...++.+.+ ..+...|+..|+ ++ ++ + .....+..+.+.+++.+.+.
T Consensus 224 ~~~-Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~g-~~-----------~---~~~~~l~~~~i~~iig~~l~ 283 (460)
T PRK11462 224 IWQ-NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI----LG-TP-----------E---VFVAFLTTYCVGNLIGSALA 283 (460)
T ss_pred HhC-ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh----cC-Ch-----------H---HHHHHHHHHHHHHHHHHHHH
Confidence 211 24556665555554443 333444444442 22 21 1 11234556667778888899
Q ss_pred HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcc
Q 012918 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAE 380 (453)
Q Consensus 301 ~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise 380 (453)
+++.||+|+|+++..+..+.++......+.. + + .....++...+.|++.+....+++++++|
T Consensus 284 ~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~----~------------~--~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 284 KPLTDWKCKVTIFWWTNALLAVISLAMFFVP----M------------Q--ASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----h------------h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988755443333222222221 1 0 12122334445677777778888888887
Q ss_pred cccC-----CCCCcceeehhhHHHHHHHHHHHhhccccceeccc
Q 012918 381 LTAD-----SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (453)
Q Consensus 381 ~~p~-----~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g 419 (453)
..+. .+|+.|...+..+++.-+++.+.+.+.|.+++..|
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7652 24777888888889999999999888888776544
No 23
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.61 E-value=1.2e-14 Score=152.48 Aligned_cols=345 Identities=12% Similarity=0.074 Sum_probs=233.6
Q ss_pred eehhhhhchhhHHhhhcCCcccccccCCCceeehhHHH---------------------HHHHHHhhcccccchhhHHHH
Q 012918 4 VAVIIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVFV---------------------IGFWLLDLANNTVQGPARALL 62 (453)
Q Consensus 4 i~ll~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~v---------------------~g~~lld~a~n~~~~p~rA~i 62 (453)
++.++.+...++-.++.|.. ++||+|.++.++ +-+.+-+++.+..+....||+
T Consensus 78 is~l~~all~P~lGa~aD~~------~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 78 ISGLLQALLAPFLGAIADYG------GRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHccc------ccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566656678876 466666554433 223345667788999999999
Q ss_pred hcCCCccch--------------------------hhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccch
Q 012918 63 ADLSGPDQR--------------------------NSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGN 116 (453)
Q Consensus 63 ~D~~p~~qr--------------------------~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~ 116 (453)
+|+++++.+ ++.+++--.+..+|+++..+++... +-. .++. ..-...
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~-----~~~-~~~~-~~~~~~ 224 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLL-----VIS-PGST-ASNTWA 224 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-----HHc-CCCc-cccchh
Confidence 999999888 8999999888899998888776431 000 0000 001235
Q ss_pred hhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhh
Q 012918 117 LKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLK 196 (453)
Q Consensus 117 ~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (453)
.|..+.++++-.++..+...+.+||+|..+..+..
T Consensus 225 ~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~--------------------------------------------- 259 (477)
T PF11700_consen 225 IRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG--------------------------------------------- 259 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc---------------------------------------------
Confidence 79999999988888888889999998763211100
Q ss_pred hccccccccCCCCCCCchhhHHHHH---HHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhh
Q 012918 197 HISKKAEDTNGSFNDGPGAVLVNLL---TSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVK 273 (453)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~ 273 (453)
. ......+++++ +.+++.| .+.+.+++.|+---|.+++......|..++ ++-++
T Consensus 260 -----~--------~~~~~g~~~l~~t~k~~~~~~-~~~~fLia~~l~~dg~~ti~~~~~i~a~~~-lg~s~-------- 316 (477)
T PF11700_consen 260 -----S--------SYLRFGFKRLWRTFKEIRKLR-QLFLFLIAYFLYSDGVNTIISFAGIYATEV-LGMST-------- 316 (477)
T ss_pred -----h--------hHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCH--------
Confidence 0 01223444444 4444554 455567777776779998888888776542 33221
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcc--hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchh
Q 012918 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR--LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQA 351 (453)
Q Consensus 274 ~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr--~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (453)
.+ .. ...++..+++++.+++.+++.||+|.| ++..++.+...+..+ .+++...... . +.-
T Consensus 317 --~~---l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~-~g~~G~~~~~-------~----g~~ 378 (477)
T PF11700_consen 317 --TQ---LI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL-YGLFGFWPSF-------F----GLK 378 (477)
T ss_pred --HH---HH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-HHHHHhhhcc-------c----Ccc
Confidence 11 11 233456678889999999999999999 777776655532221 1222110000 0 001
Q ss_pred HHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHH
Q 012918 352 IKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASL 431 (453)
Q Consensus 352 ~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~ 431 (453)
..+.++++..+.|+..|...+...++.+|+.|++ ..|...|+++++.-..-++.++++|.+.+..|+. +..|..-.+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g--~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~-r~g~~~l~~ 455 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG--REAEFFGLYAITGKASSWLGPLLFGLITDATGSQ-RYGFLFLLV 455 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHH
Confidence 2556777888899999999999999999999986 5699999999999999999999999999998854 456776667
Q ss_pred HHHHHHHHhheeccCCCCCC
Q 012918 432 SALAGGVVATLKLPHLSSNS 451 (453)
Q Consensus 432 ~~liaa~~v~~~vpet~g~~ 451 (453)
+.+++.++ .+.|++.|||-
T Consensus 456 lf~~gl~l-l~~v~~~~g~~ 474 (477)
T PF11700_consen 456 LFLIGLIL-LFFVDVEKGRE 474 (477)
T ss_pred HHHHHHHH-Hhhccchhhhh
Confidence 67767664 58899999873
No 24
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.60 E-value=2.1e-14 Score=144.84 Aligned_cols=272 Identities=12% Similarity=0.076 Sum_probs=166.3
Q ss_pred cccchhhHHHHhcCCCccchhhH--HHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHH
Q 012918 52 NTVQGPARALLADLSGPDQRNSA--NAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (453)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a--~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~ 129 (453)
........+++.|..|+++|+++ +++.+...++|..+|..++... .+ ...||+.|.+.+++.+
T Consensus 102 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l--~~-------------~~~~~~~f~~~~~~~~ 166 (375)
T TIGR00899 102 STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL--AL-------------GFGFTVMFLTAALAFV 166 (375)
T ss_pred hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH--HH-------------hcccHHHHHHHHHHHH
Confidence 34444567788898887777654 6777777888888888776541 10 1269999999888766
Q ss_pred HHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCC
Q 012918 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (453)
Q Consensus 130 i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (453)
++.++..+.+||+|.+..++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 188 (375)
T TIGR00899 167 LCGVLVWLFLPSYPRGAPGALT---------------------------------------------------------- 188 (375)
T ss_pred HHHHHHHHhCCCcccCcccccC----------------------------------------------------------
Confidence 6666666668887642211000
Q ss_pred CCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHH
Q 012918 210 NDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLN 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~ 289 (453)
....++.++ .+.++.+....++.|.+...+..+.+.|+.+ .++.++ . ..| +.....
T Consensus 189 ----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~----~~g-~~~~~~ 244 (375)
T TIGR00899 189 ----RLEVRGLLA-----SRDTRLLFVACTLMWGCNILYIINMPLLIIH-ELGLPD---------K----LAG-LMMGTA 244 (375)
T ss_pred ----cchhhhhhc-----CcchHHHHHHHHHHHHHHHHHHhhhHHHHHH-HcCCCH---------H----HHH-HHHHHH
Confidence 000111111 1234444445555555444444444544432 122221 1 112 222334
Q ss_pred HHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhh
Q 012918 290 SVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (453)
Q Consensus 290 s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (453)
.....+..++.+++.||+|||+....+.+...+++....+.. + .+...+...+.|++.+.
T Consensus 245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN----S----------------LWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH----H----------------HHHHHHHHHHHHHHHHH
Confidence 445566678889999999999988877665444433222221 1 23333444556777776
Q ss_pred hccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 370 TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 370 ~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
...+..+.+.|..|++ +|..+|+.+....+++.+.+.+.|.+.+..|. ...|.+.+++.+++.++. .+++|
T Consensus 305 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPGR---AGAATTLYTNTGRVGWIIAGSVGGILAERWSY--HAVYWFAIVMLIVALFCL-LLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHH-heecC
Confidence 6656666788888754 45779999999999999999999988877763 357888999888888765 44554
No 25
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.59 E-value=2.7e-14 Score=148.34 Aligned_cols=305 Identities=13% Similarity=0.064 Sum_probs=171.9
Q ss_pred hcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHH
Q 012918 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (453)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~ 128 (453)
++......+..+++.|..|+++|+++.++.+...++|.+++..+... ... ...||+.|.+.+++.
T Consensus 123 ~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~-----l~~----------~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 123 FFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA-----IAL----------HYGWRYGMMIAGIIA 187 (434)
T ss_pred HHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----------cccHHHHHHHHHHHH
Confidence 33444556788999999999999999999999999999998766543 110 126999998877765
Q ss_pred HHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCC
Q 012918 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS 208 (453)
Q Consensus 129 ~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (453)
++..++..+.+||+|.+...+...++. + + ..+.+ ++ . +
T Consensus 188 ~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~---~--------------------------~~~~~-----~~-~-~- 225 (434)
T PRK11663 188 IVVGLFLCWRLRDKPQAMGLPSVGEWR-----H---D--------------------------ALELA-----QQ-Q-E- 225 (434)
T ss_pred HHHHHHHHHHcCCCHhhcCCCCccccc-----c---c--------------------------ccccc-----hh-c-c-
Confidence 444444456678877543111000000 0 0 00000 00 0 0
Q ss_pred CCCCchhhHHHHHHH-hccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 209 FNDGPGAVLVNLLTS-LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
....+.++.++. ..+ .+.++.+.+..++.......+..+.+.|+.+. ++.++ + .......
T Consensus 226 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~----~a~~~~~ 286 (434)
T PRK11663 226 ---GAGLSRKEILTKYVLL-NPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-LGVDL----------V----TANSAVS 286 (434)
T ss_pred ---ccCCChhhhHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCH----------H----HHHHHHH
Confidence 001122333221 111 23445555555555555555566677766432 22221 1 1123455
Q ss_pred HHHHHHHHHhhhHHHhhhhc--Ccc-hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 288 LNSVVLGVSSFLIEPMCRWI--GSR-LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~--grr-~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
.+.+...+..++.+++.||+ ++| .......+.+.++......... + + .....+++...|
T Consensus 287 ~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~------------~---~~~~~~~~~~~g 348 (434)
T PRK11663 287 MFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF---A------------S---YVMQAACFFTIG 348 (434)
T ss_pred HHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc---c------------c---HHHHHHHHHHHH
Confidence 66677888999999999998 333 3222211111111111111110 1 0 111111222223
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
+.......+....++|+.|.+ .+|+.+|+.|++..+++.+.+..+|.+.+..|. ..+|.+.+++++++++.+.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~ 424 (434)
T PRK11663 349 FFVFGPQMLIGMAAAECSHKE--AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW--TGFFVVISIAAGISALLLLPFL 424 (434)
T ss_pred HHHhhHHHHHHHHHHhcccHh--hHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111123567888765 678889999999999999999999999988773 3589999999988888776677
Q ss_pred cCCCCCC
Q 012918 445 PHLSSNS 451 (453)
Q Consensus 445 pet~g~~ 451 (453)
++.+++.
T Consensus 425 ~~~~~~~ 431 (434)
T PRK11663 425 NAQAPRE 431 (434)
T ss_pred hhhchhc
Confidence 7777654
No 26
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.57 E-value=7.6e-14 Score=145.14 Aligned_cols=302 Identities=12% Similarity=0.090 Sum_probs=171.7
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHh
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~ 132 (453)
....+..+++.|..|+++|+++.++.+...++|+.++..+... .. .. ...||..|.+.+++.++..
T Consensus 134 ~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~-----~~----~~-----~~~w~~~f~~~~~~~~i~~ 199 (438)
T TIGR00712 134 MGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL-----GM----AW-----FNDWHAALYFPAICAIIVA 199 (438)
T ss_pred cchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH-----HH----HH-----hhhhHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999998888876544321 00 00 1369999999877766666
Q ss_pred hheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCC
Q 012918 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (453)
Q Consensus 133 ~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (453)
++..+.+||+|.....+..+ . .+.+. +. +..+ +. +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~---------------~~-~~~~---~~-----~----- 234 (438)
T TIGR00712 200 LFAFAMMRDTPQSCGLPPIE--E--------------YRNDY---------------PD-DYNE---KA-----E----- 234 (438)
T ss_pred HHHHHhccCCHHhcCCCCch--h--------------ccccc---------------cc-cccc---cc-----c-----
Confidence 66677789877532111000 0 00000 00 0000 00 0
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHH
Q 012918 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVV 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~ 292 (453)
...+.++.+.......+.++.+++..++...+++.+..|.+.|+.+ .++-++ ....+....+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~--------------~~~~~~~~~~~~~ 299 (438)
T TIGR00712 235 QELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKE-VKHFAL--------------DKSSWAYFLYEYA 299 (438)
T ss_pred cccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-ccCCCh--------------hhHHHHHHHHHHH
Confidence 0001222221111123456666677777777777777888888765 222221 1112445567778
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc-hhhhc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP-LAITY 371 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~a~~~ 371 (453)
..+..++.+++.||+++++....+.....+.............. + ...........|+. ++...
T Consensus 300 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~g~~~~~~~~ 364 (438)
T TIGR00712 300 GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAG------------N---PLVDMICMIVIGFLIYGPVM 364 (438)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCC------------c---hHHHHHHHHHHHHHHccHHH
Confidence 88889999999999965432223332222221111111110000 1 11112222223332 12111
Q ss_pred cccchhhcccccCCCCCcceeehhhHHHHHHH-HHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIP-QMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 372 ~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~-q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
.+ ...+.|..|.+ .+|+.+|+.|...+++ +++.+.+.|.+.+..|.+ .+|.+.+++.+++.+....++||.|
T Consensus 365 ~~-~~~~~~~~~~~--~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 365 LI-GLHALELAPKK--AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD--GGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HH-HHHHHHhcChh--heeeehhhhchHHHhhhhhhcchhHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 13567888865 6788899999887776 677888999988877733 4787777778888888888899877
No 27
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.57 E-value=6.7e-14 Score=147.90 Aligned_cols=319 Identities=14% Similarity=0.040 Sum_probs=179.9
Q ss_pred hhhHHhhhcCCcccccccCCCceeehhH---HHH-------------------HHHHHhhcccccchhhHHHHhcCCCcc
Q 012918 12 SADIGYILGDTKEHCSKFRGTRTRAAFV---FVI-------------------GFWLLDLANNTVQGPARALLADLSGPD 69 (453)
Q Consensus 12 ~~~ig~~l~d~~~~~~~~~~~~~~~i~~---~v~-------------------g~~lld~a~n~~~~p~rA~i~D~~p~~ 69 (453)
.+.+-.-+.|+-. .+++++||+|.++. ..+ ...+..++......+..+++.|..|+|
T Consensus 61 ~~~l~gpl~Dr~~-~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 61 FKFLWSPLMDRYT-PPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHccc-ccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4444455678731 45667777776431 111 111234455567778899999999999
Q ss_pred chhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecccCCCCCC
Q 012918 70 QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQP 149 (453)
Q Consensus 70 qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~ 149 (453)
+|++++++.+....+|.++|..++.. .. +. ...||..|.+.++..+++.... +.+||+|....+
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~-----l~----~~-----~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~~~~~- 203 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALW-----LA----DR-----YLGWQGMYWLMAALLIPCIIAT-LLAPEPTDTIPV- 203 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----HH----hc-----ccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccc-
Confidence 99999999999888888888655543 10 00 0269999999887766665443 347886532100
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCH
Q 012918 150 NHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPP 229 (453)
Q Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 229 (453)
+. . .+ + ....+++++++ .|+
T Consensus 204 -~~-----~------------------------------------------~~----~----~~~~~l~~~~~----~~~ 223 (491)
T PRK11010 204 -PK-----T------------------------------------------LE----Q----AVVAPLRDFFG----RNN 223 (491)
T ss_pred -cc-----c------------------------------------------hh----h----hHHHHHHHHHc----CcC
Confidence 00 0 00 0 01123344332 232
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.+.+.+..++...+......+.++|+.+ .++-+ .. ..|........+...+.+++.+++.||+|+
T Consensus 224 -~~~~ll~~~l~~~~~~~~~~~~~~~l~~-~~G~s------------~~-~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 224 -AWLILLLIVLYKLGDAFAMSLTTTFLIR-GVGFD------------AG-EVGLVNKTLGLLATIVGALYGGILMQRLSL 288 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2222222233333333233344444322 12212 11 122111122334667778899999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHH-HHHHHhccchhhhccccchhhcccccCCCCC
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL-VVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~ 388 (453)
|+...++.++.+++.+......... + +.......+ +.....|++.+.. +++..++.|++ .
T Consensus 289 ~~~l~i~~~l~~l~~l~~~~l~~~~-~------------~~~~l~~~~~l~~~~~g~~~~~~----~a~~~~l~~~~--~ 349 (491)
T PRK11010 289 FRALMIFGILQGVSNAGYWLLSITD-K------------NLYSMGAAVFFENLCGGMGTAAF----VALLMTLCNKS--F 349 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-c------------cHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC--C
Confidence 8877765554444332222211110 1 111111111 1112245555443 45777788765 5
Q ss_pred cceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 389 ~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
.|++.|+.|....++.++.+...|.+.+..|. ...|.+.+++++++.+...+.
T Consensus 350 ~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~--~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 350 SATQFALLSALSAVGRVYVGPVAGWFVEAHGW--PTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999999888773 347888888888887766443
No 28
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.56 E-value=8.2e-14 Score=142.45 Aligned_cols=277 Identities=15% Similarity=0.100 Sum_probs=167.7
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHh
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~ 132 (453)
....+..+++.|..|+++|++++++......+|.++|..++.. .. + ..+||+.|.+.++..+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----l~----~------~~~~~~~~~~~~~~~~~~~ 186 (408)
T PRK09874 122 GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL-----LA----D------SYGLRPVFFITASVLFLCF 186 (408)
T ss_pred hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HH----H------HhCHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999888877754 11 1 1258888888877766666
Q ss_pred hheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCC
Q 012918 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (453)
Q Consensus 133 ~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (453)
+...+..||++....++ +
T Consensus 187 ~~~~~~~~~~~~~~~~~-~------------------------------------------------------------- 204 (408)
T PRK09874 187 LVTLFCIRENFQPVSKK-E------------------------------------------------------------- 204 (408)
T ss_pred HHHHHHhccCcccccch-h-------------------------------------------------------------
Confidence 65566677754211100 0
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHH
Q 012918 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVV 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~ 292 (453)
....++.++.+ +.|+.++.++...+....+...+..+.+.|+.+ ..+ +. -+.+...| ....++++.
T Consensus 205 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---------~~~~~~~g-~~~~~~~l~ 270 (408)
T PRK09874 205 -MLHMREVVTSL-KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRE-LAG-NV---------SNIAFISG-MIASVPGVA 270 (408)
T ss_pred -hhHHHHHHHhC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-cc---------hHHHHHHH-HHHHHHHHH
Confidence 00011222222 223333333333333222322233333444322 111 10 01111112 222334556
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
..+...+.+++.||+|||+++..+.....++++...+.. + .+...+...+.|++.+....
T Consensus 271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~~~~~~ 330 (408)
T PRK09874 271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ----T----------------PLQLGILRFLLGAADGALLP 330 (408)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHhhhHhhHH
Confidence 667777889999999999999887766655444333221 1 23334455567777776554
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
.-.+++.+..|++ .+|..+|+.+....+++.+.+...|.+.+..|. ...|.+.+++.+++++...+..
T Consensus 331 ~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 331 AVQTLLVYNSSNQ--IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF--RAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhCCcc--cceeeehHHHHHHHHHHHhhHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHH
Confidence 4344555555553 678899999999999999999999988877763 3589999999998888766543
No 29
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.56 E-value=5.9e-14 Score=141.37 Aligned_cols=300 Identities=11% Similarity=0.023 Sum_probs=168.5
Q ss_pred hhhch-hhHHhhhcCCcccccccCCCceeehhH---HHHH------------------H-HHHhhcccccchhhHHHHhc
Q 012918 8 IIGFS-ADIGYILGDTKEHCSKFRGTRTRAAFV---FVIG------------------F-WLLDLANNTVQGPARALLAD 64 (453)
Q Consensus 8 ~l~~~-~~ig~~l~d~~~~~~~~~~~~~~~i~~---~v~g------------------~-~lld~a~n~~~~p~rA~i~D 64 (453)
.+++. +.+...+.|+.. ..++++||+|.+.. ..+. + .+..++......+..+++.|
T Consensus 32 ~~~~~~~~~~g~~~Dr~~-~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~ 110 (356)
T TIGR00901 32 GLPYSLKFLWSPLVDTVY-LPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLE 110 (356)
T ss_pred HHHHHHHHHHHHHHhccc-CCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 566666778752 23567888875421 0000 0 02223333445668999999
Q ss_pred CCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecccC
Q 012918 65 LSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPL 144 (453)
Q Consensus 65 ~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~ 144 (453)
..|+|+|++++++.+....+|.+++..++... ......+. .....||..|.+.++..++...+.++..||++.
T Consensus 111 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l-----~~~~g~~~--~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~ 183 (356)
T TIGR00901 111 ILSDEELGYGSTIYIVGYRAGMLLSGSLALVL-----ASPEFANT--GLITLWGYIFFWTALLILPGLLVTLFLAKEPQE 183 (356)
T ss_pred hCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH-----hhhccccc--ccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999888776431 11100000 001239999999999877766555555677422
Q ss_pred CCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHHHHHHHh
Q 012918 145 TVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSL 224 (453)
Q Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (453)
.+.++ + ++.+ .....+++++++
T Consensus 184 ~~~~~-~-----------------------------------------~~~~---------------~~~~~~~~~~~~- 205 (356)
T TIGR00901 184 DASVP-K-----------------------------------------PLTQ---------------AVLKPIREFFQR- 205 (356)
T ss_pred ccccc-h-----------------------------------------hHHH---------------HHHHHHHHHHHh-
Confidence 10000 0 0000 011233444433
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhh
Q 012918 225 RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (453)
Q Consensus 225 ~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~ 304 (453)
+.+ +.++.+.+..++.+.++.....+.+.|+.+ ++-++ + ..|......-.+...+..++.+++.
T Consensus 206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~----------~---~~g~~~~~~~~~~~~~g~~~~g~l~ 269 (356)
T TIGR00901 206 KNM-IQALLLLLLIVLYKLGDSAATVLTTLFLLD--MGFSK----------E---EIALVAKINGLLGAILGGLIGGIIM 269 (356)
T ss_pred cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------H---HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 111 234445555555666666666677777654 22221 1 1222222222244567788889999
Q ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccC
Q 012918 305 RWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (453)
Q Consensus 305 d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~ 384 (453)
||+|||+....+.++.+++.....+......+ + . .+.+ ..+.......+.+++.+..+..-.+++.|..|+
T Consensus 270 ~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 340 (356)
T TIGR00901 270 QPLNILYALLLFGIVQALTNAGFVWLASNGHH--D-G----ITFP--HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP 340 (356)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc--c-c----cccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 99999998888777666655433333211000 0 0 0000 123333444556777776667777799999998
Q ss_pred CCCCcceeehhhHHHH
Q 012918 385 SGGGQGLAIGVLNLAI 400 (453)
Q Consensus 385 ~~r~~G~~~gi~n~~~ 400 (453)
+ .+|+++|++++..
T Consensus 341 ~--~~g~~~g~~~~~~ 354 (356)
T TIGR00901 341 K--FGATQMALLSSLS 354 (356)
T ss_pred C--ccHHHHHHHHHHH
Confidence 6 7888899987654
No 30
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.55 E-value=5.3e-14 Score=140.61 Aligned_cols=261 Identities=16% Similarity=0.125 Sum_probs=166.4
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++......+..+++.|..|+++|++++++.+....+|.++|..++... . + ..+||+.|.+.++
T Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l-----~----~------~~g~~~~~~~~~~ 166 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLM-----Y----A------TLGIKWAIWVDAV 166 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----H----H------HhhHHHHHHHHHH
Confidence 34555566677899999999999999999999999999999999887641 1 0 1268998888777
Q ss_pred HHHHHhhhee-eEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 127 FLTLCALVTI-YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 127 ~~~i~~~it~-~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
..+++.+... +..||++.. ++.+. .++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~~~~~--------------------------------------~~~~~~--------- 197 (365)
T TIGR00900 167 GFAISALLIVSVRIPELAAS--EIQAL--------------------------------------SNAVLR--------- 197 (365)
T ss_pred HHHHHHHHHHhcccccCCCc--ccccc--------------------------------------chhHHH---------
Confidence 6554433322 222222110 00000 000000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhh-hcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFF-LFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~-~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
+..+.++.+++ .+.++.+++..++.+....... .+.+.|..+ .++.++ . ..| +
T Consensus 198 ------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~----~~~-~ 251 (365)
T TIGR00900 198 ------DTREGIKFVLK-----NPLLRTLLLLALLFNLVFAPAIVALFPYVQSK-YLGRGS---------T----HYG-W 251 (365)
T ss_pred ------HHHhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCch---------H----HHH-H
Confidence 01112233322 2345555665565555554444 444544332 223221 1 122 4
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
....+++...+.+++.+++.||++||+++..+..+.++++....+.. + +.+..++...+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~g 312 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-----------------P--NFPLFLVLWFAIG 312 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-----------------h--hHHHHHHHHHHHH
Confidence 45566777888889999999999999998887766666555444332 0 1334455667788
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~ 418 (453)
++.+.......+++.|..|++ .+|+.+|+.|....+++.+.+.+.|.+.+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 313 VGYGPINVPQGTLLQRRVPAE--LLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888777788999999975 6788899999999999999999988887654
No 31
>PRK03545 putative arabinose transporter; Provisional
Probab=99.55 E-value=1.5e-13 Score=140.52 Aligned_cols=267 Identities=14% Similarity=0.097 Sum_probs=163.1
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
...+..+++.|..|+|+|+++.++.+...++|..+|..++... .+ ...||++|.+.+++.++...
T Consensus 114 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l--~~-------------~~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 114 FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI--GQ-------------YLGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH--HH-------------HhcHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999999999999988777541 10 13699999998877655544
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
......||+|.. + + +.
T Consensus 179 ~~~~~~~~~~~~---~-~------------------------------------------------------------~~ 194 (390)
T PRK03545 179 LLIKLLPLLPSE---H-S------------------------------------------------------------GS 194 (390)
T ss_pred HHHHhCCCCCCC---C-c------------------------------------------------------------ch
Confidence 444445554310 0 0 00
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
....++.+++ +.++..+...++...+.+....|.++|..+ .++.+ . ....+.+..+++..
T Consensus 195 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s------------~--~~~~~~~~~~~~~~ 254 (390)
T PRK03545 195 LKSLPLLFRR-----PALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VAGLS------------E--NFATLLLLLFGGAG 254 (390)
T ss_pred HHHHHHHHhC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------c--cHHHHHHHHHHHHH
Confidence 0112233322 233444444444333333344455555433 12222 1 11224455667788
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.+.+++.+++.||++||++.. +..+.++++....... + ......+...+.|++.+.....
T Consensus 255 ~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~----~---------------~~~~~~~~~~l~g~~~~~~~~~ 314 (390)
T PRK03545 255 IIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAA----N---------------SEWHLSVLSIFWGIAIMCIGLA 314 (390)
T ss_pred HHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHh----c---------------hHHHHHHHHHHHHHHHhcchHH
Confidence 888999999999999887544 3333333332221111 1 1233334455566665443333
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
..+.+.|..|+ .+|..+|+.+....+++.+.+...|.+.+..|.. .+|.+.+++.+++.++..+..
T Consensus 315 ~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 315 MQVKVLKLAPD---ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS--SIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--HHHHHHHHHHHHHHHHHHHHc
Confidence 33456666664 4577899999999999999999999999888744 478888888888887766543
No 32
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.54 E-value=1.4e-13 Score=143.77 Aligned_cols=303 Identities=12% Similarity=0.110 Sum_probs=169.0
Q ss_pred ccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhh-hHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHH
Q 012918 51 NNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGN-ILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (453)
Q Consensus 51 ~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~-ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~ 129 (453)
......+..+.+.|..|+++|+++.++.+...++|+ +.+.+++....+ ...||+.|++.+++.+
T Consensus 134 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---------------~~gw~~~f~i~~~~~~ 198 (452)
T PRK11273 134 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---------------FNDWHAALYMPAFAAI 198 (452)
T ss_pred HhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------hccHHHHHHHHHHHHH
Confidence 333445677889999999999999999988888875 445544321000 1269999998777766
Q ss_pred HHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCC
Q 012918 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (453)
Q Consensus 130 i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (453)
+..++..+.+||+|.....+++ ++.+ + + .+ ++.+ .+ +
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~-~~~~----~-----------~---------------~~--~~~~----~~----~-- 235 (452)
T PRK11273 199 LVALFAFAMMRDTPQSCGLPPI-EEYK----N-----------D---------------YP--DDYN----EK----H-- 235 (452)
T ss_pred HHHHHHHHHccCCHhhcCCCCh-hhhh----h-----------c---------------cc--cccc----cc----c--
Confidence 6666667778987753211100 0000 0 0 00 0000 00 0
Q ss_pred CCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHH
Q 012918 210 NDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLN 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~ 289 (453)
+.+.+.++.+.......+.++.+++..++....++.+..|.|.|+.++ ++-+ . ....+...++
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s------------~--~~~~~~~~~~ 298 (452)
T PRK11273 236 --EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFA------------L--DKSSWAYFLY 298 (452)
T ss_pred --CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC------------H--HHHHHHHHHH
Confidence 001112332221111234566677777777766677778888886542 2211 1 1112344456
Q ss_pred HHHHHHHhhhHHHhhhhc--CcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 290 SVVLGVSSFLIEPMCRWI--GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 290 s~~~~i~s~~~~~l~d~~--grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
++...+..++.+++.||+ +||+... ....+.+++++...+.. .+ + ....++.....|..
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~---~~------------~---~~~~~~~~~~~g~~ 360 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP---AG------------N---PTVDMACMIVIGFL 360 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc---cc------------C---hHHHHHHHHHHHHH
Confidence 677777889999999999 4554322 22222222222111111 00 1 11111222223332
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHH-HhhccccceecccccchhhHhHHHHHHHHHHHHhhe-ec
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMI-VSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL-KL 444 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i-~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~-~v 444 (453)
.........+.+.|+.|++ .+|+.+|+.+....++..+ .+...|.+.+..|. ...|.+.+++++++++++.. .-
T Consensus 361 ~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 361 IYGPVMLIGLHALELAPKK--AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHhHHHHHHHHHHHHcChh--hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111111223567888875 6788899999888888765 57888888888873 35788888888888887774 57
Q ss_pred cCCCCC
Q 012918 445 PHLSSN 450 (453)
Q Consensus 445 pet~g~ 450 (453)
+|+|.+
T Consensus 437 ~~~~~~ 442 (452)
T PRK11273 437 GEKRHH 442 (452)
T ss_pred cccchH
Confidence 788764
No 33
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.53 E-value=2.5e-13 Score=137.42 Aligned_cols=257 Identities=12% Similarity=0.087 Sum_probs=159.7
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
..+..++......+..+++.|..|+++|++++++.+.+..+|..+|..++.. .. . ...||.+|.+
T Consensus 100 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-----l~----~------~~~~~~~~~~ 164 (385)
T TIGR00710 100 RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY-----IL----V------WLSWHAIFAF 164 (385)
T ss_pred HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----H------HcCHHHHHHH
Confidence 3345566666778899999999999999999999999999999998877754 11 0 1258998888
Q ss_pred HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccc
Q 012918 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (453)
.++..+++.+...+..||++..+.++ + .+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------------------~~- 193 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPYEARI-Q-------------------------------------------------IS- 193 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccC-C-------------------------------------------------HH-
Confidence 77766666555555667654211000 0 00
Q ss_pred ccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
.....+++.++ - +.++...+..++.+.+++.+..+.+.++.+ .++.++ + ..|
T Consensus 194 --------~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-----------~--~~g- 245 (385)
T TIGR00710 194 --------TYFETFLLLLK----S-KMFWGYALIYGASFGGFFAFFSGAPFVYID-IMGVSP-----------S--VFG- 245 (385)
T ss_pred --------HHHHHHHHHHc----C-chhHHHHHHHHHHHHHHHHHHHcChHHHHH-HcCCCH-----------H--HHH-
Confidence 01112233222 1 234444555555666666666666665432 222221 1 122
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+++...+.+++.+++.||+|+|+....+..++.++...+.+..... . + ..........+.
T Consensus 246 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~--~~~~~~~~~~~~ 310 (385)
T TIGR00710 246 LLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG-L------------G--SWAMIIGPMMFV 310 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc-c------------c--hHHHHHHHHHHH
Confidence 334456677888899999999999999998888777666655444332110 0 0 123334455668
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccc
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG 412 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g 412 (453)
|++++.......+...|..|+ .+|+..++.|...+..-.+.+...+
T Consensus 311 g~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 311 GIGNSMISSIAMAYALEDFPH---VAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777777777764 4678899988877654444444444
No 34
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.53 E-value=1e-13 Score=139.87 Aligned_cols=271 Identities=14% Similarity=0.044 Sum_probs=163.0
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++......+..+++.|..|+++|++..++.+....+|.+++..++... ...+ ++.. .....||+.|.+.++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~--~~~~----~~~~-~~~~~w~~~~~~~~~ 178 (394)
T TIGR00883 106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL--SYLL----GDDA-LLEWGWRIPFLVSAV 178 (394)
T ss_pred HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH--HHhc----CHHH-hhccchHHHHHHHHH
Confidence 34455566777899999999999999999999999999998887765431 0000 0000 001369999988877
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.+++.. .....||+|.++.++++.
T Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------------------------------------ 203 (394)
T TIGR00883 179 LVLIGLY-LRRNLEETPVFEKAQEKH------------------------------------------------------ 203 (394)
T ss_pred HHHHHHH-HHHhcCCChhHHHHHhcc------------------------------------------------------
Confidence 7655443 334456654322111000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+ ....+.++.+++ .++.++..+...++.+.+...+..|.+.|+.+. ++.+ + .......
T Consensus 204 ~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~------------~--~~~~~~~ 261 (394)
T TIGR00883 204 K----KKRGPIRETLTK---HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-LGLS------------A--NSALLVL 261 (394)
T ss_pred c----cccCCHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC------------h--hHHHHHH
Confidence 0 011123334432 233455566666777777776777777775431 2211 1 1111334
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHH-HHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACM-ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
....+...+...+.+++.||+|||+.+..+..+..++. ....... .++ .....+....+.|+
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~g~ 324 (394)
T TIGR00883 262 MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---DSG--------------SFTLFFFLVLGLAL 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cCC--------------chHHHHHHHHHHHH
Confidence 45666777888899999999999998775443333222 1111111 010 12233344455666
Q ss_pred chhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
..+.....-.+++.|.+|++ .+|+.+|+ .+....+++.+.+.+.|.+.+..|.
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~ 378 (394)
T TIGR00883 325 IGGMYTGPMGSFLPELFPTE--VRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGD 378 (394)
T ss_pred HHHHHhhhHHHHHHHhCCcc--ceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCc
Confidence 66666666678999999986 45666787 4666778888999999998887763
No 35
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.53 E-value=1.3e-13 Score=138.33 Aligned_cols=132 Identities=18% Similarity=0.136 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+++...+.+++.+++.||+|||+.+.++.+..+++++...+.... .....+......
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 305 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPML------------------NDVLFLATVALV 305 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccc------------------hhHHHHHHHHHH
Confidence 34456777888889999999999999999888877777766544433210 011222334456
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa 437 (453)
|+.++....+-.++++|.+|++ .+|+.+|+.+....+++.+.+..+|.+.+..|. ...|.+.+++++++.
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPA--NSAANYGFLYTAKAVAGIFGGLIASHALTEIGF--EYTFIVTGAFALTSL 375 (377)
T ss_pred HHHhccchhccHHHHHHHhhhh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch--hhHHHHHHHHHHHhc
Confidence 6666665555556889999876 678889999999999999999999998887763 357888888777654
No 36
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.52 E-value=1.5e-13 Score=136.08 Aligned_cols=256 Identities=21% Similarity=0.261 Sum_probs=193.7
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
++..+..++....+.+..+++.|..|+|+|++++++.+....+|..+|..++... . + ..+||+.|
T Consensus 92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~----~------~~~~~~~~ 156 (352)
T cd06174 92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL-----A----E------SLGWRWLF 156 (352)
T ss_pred HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH-----H----H------HhhHHHHH
Confidence 3344567778888999999999999999999999999999999999998877641 1 1 12589998
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccc
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (453)
.+.+++.+++.++.. ..+
T Consensus 157 ~~~~~~~~~~~~~~~-~~~------------------------------------------------------------- 174 (352)
T cd06174 157 LILAILGLLLALLLL-FLL------------------------------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHH-HHH-------------------------------------------------------------
Confidence 888877655544321 111
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhH
Q 012918 202 AEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE 281 (453)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~ 281 (453)
|.++.+++..++.+.+.+.+..|.+.+..+ .++.+ + ..
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~--~~ 212 (352)
T cd06174 175 ---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQE-VLGLS------------A--AE 212 (352)
T ss_pred ---------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCC------------H--HH
Confidence 345556777777888888888888887654 22222 1 11
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhcCcch-hhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH
Q 012918 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRL-VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (453)
Q Consensus 282 g~~~l~~~s~~~~i~s~~~~~l~d~~grr~-l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (453)
..+....+++...+.+.+.+++.||+|||+ .+..+..+..+++....+.. + .....+..
T Consensus 213 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~ 272 (352)
T cd06174 213 AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP----S----------------LALLLVAL 272 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHH
Confidence 124455677888889999999999999999 88888888877766555442 1 34455667
Q ss_pred HHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 361 ~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
.+.|++.+.......+++.|..|++ .+|+.+|+.+....+++.+.+...|.+.+..|.. ..|.+.+++.+++.++.
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~--~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPE--ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG--GVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc--hHHHHHHHHHHHHHHHh
Confidence 7788999988888899999999975 6788899999999999999999999998766633 47889999988887754
No 37
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.51 E-value=6e-14 Score=142.57 Aligned_cols=286 Identities=10% Similarity=0.037 Sum_probs=156.4
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+.-++.........+++.|..|+++|++++++.+...++|.+++..++.. ... ..+..||+.|.+.+
T Consensus 109 l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-----l~~--------~~~~~w~~~f~~~~ 175 (405)
T TIGR00891 109 VIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL-----VVP--------VWGDGWRALFFISI 175 (405)
T ss_pred HHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHH--------hcCccHHHHHHHHH
Confidence 34455566677889999999999999999999999999999998877653 110 01235999999988
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.++++ +.....||+|.++.+++++++.++ ..++...+ +.. .+.
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~------------------~~~------~~~-- 220 (405)
T TIGR00891 176 LPIIFAL-WLRKNIPEAEDWKEKHAGKALVRT--------MVDILYGG------------------EHR------IAN-- 220 (405)
T ss_pred HHHHHHH-HHHHhCCCChhHHHHhhhhhhhhh--------HHHHHhcc------------------chh------hhh--
Confidence 7765544 345567887644322111000000 00000000 000 000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
..+.......+..++.++.+..++...++..........+++.|+.+. ++.+ . ....+.
T Consensus 221 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s------------~--~~~~~~ 279 (405)
T TIGR00891 221 ------IVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLS------------P--HTVANI 279 (405)
T ss_pred ------hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCC------------H--HHHHHH
Confidence 000000111111111111122222222222222223444455554321 1211 1 111233
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...+++...+.+++.+++.||+|||+.+.++.+..++......... + + .....+...+.|+
T Consensus 280 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~------------~---~~~~~~~~~~~~~ 340 (405)
T TIGR00891 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG----A------------N---VAVLGLGLFFQQM 340 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC----C------------c---hHHHHHHHHHHHH
Confidence 4566777888899999999999999998887655432221111111 1 1 1112222223333
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG 421 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~ 421 (453)
..+....+-.+++.|+.|++ .+|+.+|+.+....++..+.+.+.|.+.+..|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~ 394 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTD--QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEY 394 (405)
T ss_pred HHccchhhHHHHHhhhCCcc--hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33333334446889999876 6788899999999999999999999999888744
No 38
>PRK09848 glucuronide transporter; Provisional
Probab=99.50 E-value=3.9e-13 Score=140.13 Aligned_cols=303 Identities=16% Similarity=0.072 Sum_probs=176.2
Q ss_pred hhhhchhhHHhhhcCCcccccccCCCceeehhHH-------HH-------------------HHHHHhhcccccchhhHH
Q 012918 7 IIIGFSADIGYILGDTKEHCSKFRGTRTRAAFVF-------VI-------------------GFWLLDLANNTVQGPARA 60 (453)
Q Consensus 7 l~l~~~~~ig~~l~d~~~~~~~~~~~~~~~i~~~-------v~-------------------g~~lld~a~n~~~~p~rA 60 (453)
+.-+.++.+...+.|++ ++|++++|||.++.. ++ ...+..++....+.|..+
T Consensus 55 ~~~~~~~~~~G~l~Dr~--~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 132 (448)
T PRK09848 55 VFDAFADVFAGRVVDSV--NTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGS 132 (448)
T ss_pred HHHHHhhhhheeeeecC--CCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhh
Confidence 44456677778889987 577899999843211 11 112334445567778888
Q ss_pred HHhcCCCc-cchhhHHHHHHHHHHhh-hhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeE
Q 012918 61 LLADLSGP-DQRNSANAIFCSWMAVG-NILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYF 138 (453)
Q Consensus 61 ~i~D~~p~-~qr~~a~~~~~~~~~lG-~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~ 138 (453)
+..++.++ ++|.+.+++.+....+| ..++..++.+ ..+...+. ....+.....+.++..+++.+++...
T Consensus 133 l~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~-----i~~~~g~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 203 (448)
T PRK09848 133 LATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPS-----IKNSSPEE----MVSVYHFWTIVLAIAGMVLYFICFKS 203 (448)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCc----hhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888865 78888888776544443 2223322221 00000000 00122222222233333444455556
Q ss_pred eecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhhHH
Q 012918 139 ADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAVLV 218 (453)
Q Consensus 139 v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (453)
.||++....+ + ......++
T Consensus 204 ~~e~~~~~~~--~-----------------------------------------------------------~~~~~~~~ 222 (448)
T PRK09848 204 TRENVVRIVA--Q-----------------------------------------------------------PSLKISLQ 222 (448)
T ss_pred cEeccCCCcc--C-----------------------------------------------------------CCHHHHHH
Confidence 6775321000 0 00122234
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhh
Q 012918 219 NLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSF 298 (453)
Q Consensus 219 ~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~ 298 (453)
+++++ |.++.+++..++.+.++..+..+.+.|+.+ +++.+ . ..+.+.+....+..++.+.
T Consensus 223 ~l~~n-----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~------------~--~~~~~~~~~~~~~~~~~~~ 282 (448)
T PRK09848 223 TLKRN-----RPLFMLCIGALCVLISTFAVSASSLFYVRY-VLNDT------------G--LFTVLVLVQNLVGTVASAP 282 (448)
T ss_pred HHhCC-----chHHHHHHHHHHHHHHHHHHhhhheeeEee-ecCCh------------H--HHHHHHHHHHHHHHHHHHH
Confidence 44432 346667777777777776666555555433 44321 1 1222222233445566788
Q ss_pred hHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhh
Q 012918 299 LIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAIT 378 (453)
Q Consensus 299 ~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLi 378 (453)
+.+++.||+|+|+++.+|.++.+++.+.+.+.. .+ ..+...+...+.|++.+.....+.++.
T Consensus 283 l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~---~~---------------~~~~~~~~~~l~g~G~~~~~~~~~al~ 344 (448)
T PRK09848 283 LVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS---VW---------------SLPVALVALAIASIGQGVTMTVMWALE 344 (448)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---ch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999887777665443321 01 123334445567888888888888999
Q ss_pred cccccCC-----CCCcceeehhhHHHHHHHHHHHhhccccceeccc
Q 012918 379 AELTADS-----GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (453)
Q Consensus 379 se~~p~~-----~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g 419 (453)
+|..|.+ +|..|.+.|+.|++.-+++.+.+.+.|.+++..|
T Consensus 345 ~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 345 ADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8887643 3567999999999999999999888888776655
No 39
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.49 E-value=1.6e-13 Score=137.69 Aligned_cols=284 Identities=12% Similarity=0.084 Sum_probs=162.4
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhh-ccccccccccccccccchhhhcccchhhHHHH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGF-SAGASGSWHRWFPFLTSRACCAACGNLKAAFL 122 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy-~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~ 122 (453)
..+..++......+..+++.|..|+++|+++.++.+....+|..++. +++... .. ...||+.|.
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~~-------------~~~~~~~~~ 154 (379)
T TIGR00881 90 WALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGI--AE-------------LYSWHWVFI 154 (379)
T ss_pred HHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHH--Hh-------------cCCchhHHH
Confidence 33455666777888999999999999999999999999999998887 344321 00 136888888
Q ss_pred HHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccc
Q 012918 123 VAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA 202 (453)
Q Consensus 123 i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (453)
+.++..++..++..+..||+|.....+..+++..+ + .++.++ +.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~~~~~--~~~ 199 (379)
T TIGR00881 155 VPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNE---E------------------------------PDGDAE--KKE 199 (379)
T ss_pred HHHHHHHHHHHHHheeeCCCccccccCccccCccc---c------------------------------cccccc--ccc
Confidence 87776656556667778887653221111000000 0 000000 000
Q ss_pred cccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHH
Q 012918 203 EDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (453)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g 282 (453)
+ + ....+...+++++ .+.++.+++..++.+.+.+.+..|.+.|+.+ .++.++ ...
T Consensus 200 ~---~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~--------------~~~ 254 (379)
T TIGR00881 200 E---E--LTKKQIFLQYVLL-----NKVLWYISLGYVFVYVVRTGILDWSPLYLTQ-EKGFSK--------------EKA 254 (379)
T ss_pred c---c--ccchHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH--------------HHH
Confidence 0 0 0001112233332 2346667777777777777777778877644 222221 112
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
.+....+++...+..++.+++.||..+|+......................... ......+....
T Consensus 255 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 319 (379)
T TIGR00881 255 SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAA---------------NPLMDLICLFA 319 (379)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcch---------------hHHHHHHHHHH
Confidence 244556667778888999999998644333222222222211111111110000 12222233334
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g 419 (453)
.|+.......+...++.|..|++ .+|+..|+.+....+++.+.+.+.|.+.+..|
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 320 LGFLVYGPQMLIGVIASELAPKK--AAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 45433333333445788999875 67888999999999999999999999887765
No 40
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.48 E-value=8.4e-13 Score=136.36 Aligned_cols=306 Identities=12% Similarity=0.075 Sum_probs=168.7
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+.-++.........+++.|..|+++|+++.++.+...++|..++..++... . +. ....+ ..+||++|.+.+
T Consensus 105 l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l-~-~~-~~~~~------~~gwr~~f~~~~ 175 (412)
T TIGR02332 105 LVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI-L-AL-DGLMA------LKGWQWLFLLEG 175 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hC-CCCCC------ccchhHHHHHHH
Confidence 344444445555668899999999999999999999999999998887531 0 00 00000 137999999987
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.++...+..+++||+|....--.+ ++++ +.++. .+.+ +.+.+ +.++
T Consensus 176 ~~~l~~~~~~~~~~~~~p~~~~~l~~--~~~~----~~~~~---~~~~------------------~~~~~---~~~~-- 223 (412)
T TIGR02332 176 FPSVILGVMTWFWLDDSPDKAKWLDE--EDKK----ALKEM---IDND------------------QLTLE---QPEG-- 223 (412)
T ss_pred HHHHHHHHHHhhccCCCcccCCCCCH--HHHH----HHHHH---HHhc------------------ccccc---cccc--
Confidence 77665555667778998853110000 0000 00000 0000 00000 0000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+. .......++.++.+++ +.++...+..++...++..+..|.+.|+.+..+ +. +. ...| ..
T Consensus 224 -~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-~~-----------s~-~~~~-~~ 284 (412)
T TIGR02332 224 -AF--AHAAMPQRSMLREIFT--PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQ-GS-----------SN-IMIG-LL 284 (412)
T ss_pred -cc--ccccccHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-----------cH-HHhH-HH
Confidence 00 0001111233444332 346666777777777788888889988754111 11 11 1222 33
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
.....+...+..++.+++.||++||+... .+.+..++++.. . .. . .+ + ... +..+.+.+
T Consensus 285 ~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~-~~-~-~~------------~---~~~-~~~~~~~~ 344 (412)
T TIGR02332 285 AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-A-SA-T-DH------------N---LIQ-LLGIIMAS 344 (412)
T ss_pred hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-H-Hh-c-CC------------H---HHH-HHHHHHHH
Confidence 45566777888899999999999887543 333333332211 1 11 0 01 1 111 11111122
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHH
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSAL 434 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~l 434 (453)
++......+.+....|.+|.+ .+|+.+|+.|....+++++.+.+.|.+.+..|+.. +.|.+.+++.+
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~~--~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~-~~~~~~~~~~~ 411 (412)
T TIGR02332 345 MGSFSAMAIFWTTPDQSISLQ--ARAIAIAVINATGNIGSALSPFLIGILKDATGSFN-SGLWFVAALLV 411 (412)
T ss_pred HHhhhhhhHHHhhcccccchH--HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCc-hhHHHHHHHHh
Confidence 222111122223446677765 67888999999999999999999999999887653 45666555443
No 41
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.47 E-value=1.5e-12 Score=131.85 Aligned_cols=288 Identities=14% Similarity=0.056 Sum_probs=158.6
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+..++......+..+++.|..|+|+|+++.++.+....+|..++..++... .+ ...||+.|.+.
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~-------------~~~~~~~~~~~ 151 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWL--LV-------------WFSWHAIFWVL 151 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------HcChHHHHHHH
Confidence 3445556666678899999999999999999999999999999988776531 00 12589999887
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccc
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (453)
+++.++..++..+..||++..+.++ + . +.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~-----------------------------~~~-- 181 (377)
T PRK11102 152 ALAAILAAALVFFFIPETLPKERRQ-P------------------F-----------------------------HLR-- 181 (377)
T ss_pred HHHHHHHHHHHHHhCCccCcccccC-C------------------C-----------------------------ChH--
Confidence 7776666555566677754211000 0 0 000
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
+...++++.++ .| .++..++..++.+.+.+.+..+.+.+..+ .++.++ + ..| +
T Consensus 182 -------~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~-----------~--~~g-~ 234 (377)
T PRK11102 182 -------TTIRNFASLFR----HK-RVLGYMLASGFSFAGMFSFLTAGPFVYIE-LNGVSP-----------Q--NFG-Y 234 (377)
T ss_pred -------HHHHHHHHHHc----Ch-HHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HhCCCH-----------H--HHH-H
Confidence 01112233332 23 34455666677777777666665554332 122111 1 122 3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
....+.+...+.+++.+++.||+|||+.+..+..+..++.+......... . ..+...+....++
T Consensus 235 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~ 298 (377)
T PRK11102 235 YFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-L---------------GFWALVVGVAAFV 298 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-h---------------hHHHHHHHHHHHH
Confidence 44566777888899999999999999998887765443322222221110 0 0122222223333
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHH-HHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAI-VIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~-~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
.+.+.........+.|..|+ .+|...++.+... .+++++.+...+... . .....+...+++.+++.++..+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~~~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~ 371 (377)
T PRK11102 299 GCVSMISSNAMAVILDEFPH---MAGTASSLAGTLRFGIGAIVGALLSLAPF---T-SAWPMVWSMAFCSILSILFYLYA 371 (377)
T ss_pred HHHHHhhHHHHHHHhccccc---cchHHHHHHHHHHHHHHHHHHHHHHhccC---C-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333456666663 4566677766653 355555544432221 1 11223444455555555544444
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
.+|.
T Consensus 372 ~~~~ 375 (377)
T PRK11102 372 SRPK 375 (377)
T ss_pred cccc
Confidence 4433
No 42
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.4e-12 Score=131.79 Aligned_cols=282 Identities=18% Similarity=0.157 Sum_probs=194.5
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
++=.+.-++.....+..-++.+|++||+||+++.++...-..+..++|-=+|.. . ++ . -.||..|
T Consensus 106 ~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~------i----g~---~--~GWR~~F 170 (394)
T COG2814 106 LARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF------L----GQ---L--FGWRATF 170 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH------H----HH---H--hhHHHHH
Confidence 444556777778888899999999999999999999866666655555544432 1 11 1 2699999
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccc
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (453)
.+.+...+++++.....+| |....++
T Consensus 171 ~~ia~l~ll~~~~~~~~lP--~~~~~~~---------------------------------------------------- 196 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP--PSEISGS---------------------------------------------------- 196 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC--CccCCCC----------------------------------------------------
Confidence 9999998888888888888 2211110
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhH
Q 012918 202 AEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE 281 (453)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~ 281 (453)
...+.++.++-. .++.++...+..++...|.|....|..+++.| +.+-+ + ..
T Consensus 197 -----------~~~~~~~~~~~l--~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-v~g~s-----------~---~~ 248 (394)
T COG2814 197 -----------LPGPLRTLLRLL--RRPGVLLGLLATFLFMTGHFALYTYIRPFLES-VAGFS-----------V---SA 248 (394)
T ss_pred -----------CCcchhHHHHHh--cCchHHHHHHHHHHHHcchhhhHHhHHHHHHH-ccCCC-----------H---hH
Confidence 001112222221 12345556777788888999999999998766 43322 1 23
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHH
Q 012918 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (453)
Q Consensus 282 g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (453)
-++.++.|++..++.+.+.+++.|| +.|+.......+++++++...+.. + ..+..++...
T Consensus 249 vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~----~---------------~~~~~~~~~~ 308 (394)
T COG2814 249 VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG----A---------------SPALALALLF 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc----c---------------hHHHHHHHHH
Confidence 3589999999999999999999999 999988888788877776654443 1 1333444444
Q ss_pred HhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 362 ~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
++|+...+..-.=..-+++..|+ ..+..+++.+.+..++..+.+.+.|.+++..|.. .+.++++++.+++.+++.
T Consensus 309 ~wg~a~~~~~~~~~~~~a~~~p~---~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~--~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 309 LWGFAFSPALQGLQTRLARLAPD---AADLAGSLNVAAFNLGIALGAALGGLVLDALGYA--ATGWVGAALLLLALLLAL 383 (394)
T ss_pred HHHHHhhhhhhHHHHHhcccCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHH
Confidence 45555554333311233443333 5677799999999999999999999999887643 579999999999888776
Q ss_pred eecc
Q 012918 442 LKLP 445 (453)
Q Consensus 442 ~~vp 445 (453)
...+
T Consensus 384 ~~~~ 387 (394)
T COG2814 384 LSAR 387 (394)
T ss_pred HHHh
Confidence 5433
No 43
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.47 E-value=4e-13 Score=137.79 Aligned_cols=287 Identities=8% Similarity=0.036 Sum_probs=175.0
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
++-.+.-++.........+++.|..| ++|+++.++++....+|..+|..++... . . ...+||..+
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l-----~----~-----~~~~w~~~~ 166 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL-----V----Q-----HSETWYQTL 166 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH-----H----H-----hcCCHHHHH
Confidence 33344556666667778889999886 8899999999998888888887766431 0 0 012588776
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccc
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (453)
.+.+++.++.........+++|. ++.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~----------------------------------------------- 194 (393)
T PRK09705 167 AWWALPAVVALFAWWWQSAREVA---SSHK--T----------------------------------------------- 194 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc---cccC--C-----------------------------------------------
Confidence 65444433333222221122211 0000 0
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhH
Q 012918 202 AEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVRE 281 (453)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~ 281 (453)
+. .. ++.++ . +..+.+++..++...+++.+..|.++|+.+ ++.++ .+ .
T Consensus 195 ~~--------~~----~~~l~----~-~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~---------~~----a 242 (393)
T PRK09705 195 TT--------TP----VRVVF----T-PRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGASA---------QY----S 242 (393)
T ss_pred Cc--------CC----ccccc----C-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCh---------hh----h
Confidence 00 00 00000 1 223444455555556777777788887654 22221 11 1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHH
Q 012918 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (453)
Q Consensus 282 g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (453)
| ..+.++++..++.+++.+++.||+|||+....+..+.+++...+.... + + ..... ..
T Consensus 243 g-~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~----~------------~---~~~~~--~~ 300 (393)
T PRK09705 243 G-SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP----L------------Q---LPVLW--AM 300 (393)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc----c------------h---HHHHH--HH
Confidence 2 344567788888899999999999999998887666655544333221 1 0 11111 22
Q ss_pred HhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 362 ~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
+.|++.+.......+...+..+++ +.+|+..|+.+....+.+.+.+...|.+.+..|+.. ..|.+.+++++++.++..
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~-~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYL-MDWAFHALCVVGLMIITL 378 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHHHH
Confidence 345555544444444555666432 357888999999999999999999999999888653 468888888888888878
Q ss_pred eeccCCCCCC
Q 012918 442 LKLPHLSSNS 451 (453)
Q Consensus 442 ~~vpet~g~~ 451 (453)
.+.|||..|-
T Consensus 379 ~~~~~~~~~~ 388 (393)
T PRK09705 379 RFAPARFPQL 388 (393)
T ss_pred Hhccccccch
Confidence 8999999873
No 44
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.47 E-value=9.1e-13 Score=152.49 Aligned_cols=299 Identities=14% Similarity=0.105 Sum_probs=172.4
Q ss_pred hhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHH
Q 012918 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (453)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~ 127 (453)
-++......+..++++|.+|+++|++++++++....+|.++|..+++.. ...+ ..+..... ..+.+.+.+..+.
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l--~~~~---~~~~~~~~-~~~~~~~~~~~~~ 187 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFL--FESV---NGNTPSEI-LGRIAPAGLVLLA 187 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHH--HHhh---cccccccc-ccchHHHHHHHHH
Confidence 3444555666789999999999999999999999999999999888652 1000 00000000 1233444333333
Q ss_pred HHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 128 ~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
.++..++..+.+||.|.....+.+. + .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------------------------~----- 214 (1146)
T PRK08633 188 VAVLGLIFAYRLPKVPAAAPEVFDK-K-----------------------------------------------K----- 214 (1146)
T ss_pred HHHHHHHHHhcCcCCCCCCcccccc-c-----------------------------------------------c-----
Confidence 3333344456678876432211000 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
.......++.++.+++- +.++...+..++.|...+.+..+++.|+.+ .++.+ .....| +.+.
T Consensus 215 ---~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s------------~~~~~g-~~~~ 276 (1146)
T PRK08633 215 ---YLFPKLLWRNLKLLRSD-RVLWLAIIGLSYFWFISQLAQANFPAYAKE-VLGLD------------NTFQVQ-YLLA 276 (1146)
T ss_pred ---cccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HhCCC------------cHHHHH-HHHH
Confidence 00011112222222222 344545555555565555566666666543 22222 110122 4455
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
.+++..++++++.+++.||+++|+++.++.++++++++.+.+.. + .+..++.+.++|++.
T Consensus 277 ~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 277 ASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP----S----------------LASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHHHH
Confidence 56677788899999999999999988888777776665444332 1 333445556677777
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
+.....-.+++.+..|.+ .+|..+|+.|+...++.++.+.+.+.+.. .+......|.+.+.++++..++....+|+
T Consensus 337 ~~~~~~~~~~~~~~~p~~--~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEK--ELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGTLYTLLLLPD 412 (1146)
T ss_pred HHhhHHHHHHHhhcCCcc--chhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 776666667888888875 67888999999999998776665554432 22222235666666655555544444444
No 45
>PRK15075 citrate-proton symporter; Provisional
Probab=99.46 E-value=1.1e-12 Score=136.15 Aligned_cols=262 Identities=12% Similarity=0.057 Sum_probs=137.3
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
...+..++++|..|+++|+++.++.+....+|..+|..++... .+.+..... ...+||+.|.+.++...+ ..
T Consensus 134 ~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l-----~~~~~~~~~--~~~gWr~~f~~~~~~~~~-~~ 205 (434)
T PRK15075 134 ELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL-----NQWLSPAQM--AEWGWRIPFLIGCLIVPF-IF 205 (434)
T ss_pred cHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCHHHH--hccchHHHHHHHHHHHHH-HH
Confidence 3456789999999999999999999888777777666665431 000000000 013699999987655322 22
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
......||++.+..++ ++ + ..
T Consensus 206 ~~~~~~~e~~~~~~~~----------------------------------------------------~~---~----~~ 226 (434)
T PRK15075 206 LIRRSLEETEEFLARK----------------------------------------------------HR---P----SM 226 (434)
T ss_pred HHHHhcCCCHHHHHhh----------------------------------------------------hc---c----cc
Confidence 2111122211000000 00 0 00
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
+..+++..+ .++.....++..+++..+++.+..|.++|+.+. ++-+ . ....+....+++..
T Consensus 227 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~~------------~--~~~~~~~~~~~~~~ 287 (434)
T PRK15075 227 REIFRSLAA----NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-LHLS------------A--ADSLLVTLCVGVSN 287 (434)
T ss_pred ccHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC------------H--HHHHHHHHHHHHHH
Confidence 111222221 122222234444555666777788888876542 2222 1 11123445666777
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHH-HHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMA-TTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
.+.+.+.+++.||+|||+++..+.+..++... ...... . + + ..........+.|+.++....
T Consensus 288 ~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~-~------------~--~~~~~~~~~~~~~~~~g~~~~ 350 (434)
T PRK15075 288 FIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV--A-A------------P--SFARMLAVELWLSFLYGSYNG 350 (434)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--c-C------------C--chHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999988776444322111 111111 0 1 0 011111122223344444444
Q ss_pred ccchhhcccccCCCCCcceeehhh-HHHHHHHHHHHhhccccceecccc
Q 012918 373 VPFAITAELTADSGGGQGLAIGVL-NLAIVIPQMIVSLGAGPWDALFGG 420 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~-n~~~~l~q~i~s~~~g~l~~~~g~ 420 (453)
.....++|..|++. +|+.+|+. |+...+...+.+.+.|.+.+..|.
T Consensus 351 ~~~~~~~e~~p~~~--rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 351 AMVVALTEVMPAEV--RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred hHHHHHHHHCCCCc--cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 44467899999874 45557774 333334455677778888787774
No 46
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.46 E-value=1.4e-12 Score=133.63 Aligned_cols=266 Identities=12% Similarity=0.109 Sum_probs=149.3
Q ss_pred hHHHHhcCCCccchh--hHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhhe
Q 012918 58 ARALLADLSGPDQRN--SANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (453)
Q Consensus 58 ~rA~i~D~~p~~qr~--~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it 135 (453)
..+++.|..|+++|. ..+++.+...++|.++|..++... .+ .-+||..|.+.++..+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l--~~-------------~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL--AM-------------GFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH--HH-------------hcChHHHHHHHHHHHHHHHHHH
Confidence 456667766665543 345777788889988888777541 00 1269999988877665665555
Q ss_pred eeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchh
Q 012918 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (453)
Q Consensus 136 ~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (453)
.+.+||.|..+.+..+ + . + ..
T Consensus 191 ~~~~~~~~~~~~~~~~-----~--------------------------------------------~----~----~~-- 211 (393)
T PRK15011 191 WLFLPSMRKELPLATG-----T--------------------------------------------L----E----AP-- 211 (393)
T ss_pred HhhcCccCCCCccccc-----c--------------------------------------------c----c----cc--
Confidence 6667886522110000 0 0 0 00
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHH
Q 012918 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (453)
Q Consensus 216 ~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i 295 (453)
++.|+..+......+..|.....+..+.+.|+.+ .++.+ +. ..| +......+..++
T Consensus 212 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~~~~------------~~-~~g-~~~~~~~~~~i~ 267 (393)
T PRK15011 212 ---------RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIIN-ELHLP------------EK-LAG-VMMGTAAGLEIP 267 (393)
T ss_pred ---------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC------------HH-HHH-HHHHHHHHHHHH
Confidence 0011222222333344444433344445555433 12222 10 122 222334455666
Q ss_pred HhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccc
Q 012918 296 SSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPF 375 (453)
Q Consensus 296 ~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~ 375 (453)
..++.+++.||+|||+....+.....+.+....... + ....++...+.++.++.....-.
T Consensus 268 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 268 TMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH----S----------------PAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh----h----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999987776554443332222111 1 12222222333333333222223
Q ss_pred hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 376 AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 376 aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+...|..|+ .+|+.+|+.+....+++.+.+...|.+.+..|. ...|.+.+++.+++.+ +.+++|||
T Consensus 328 ~~~~~~~p~---~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~--~~~~~~~~~~~~~~~~-~~~~~~~~ 393 (393)
T PRK15011 328 LYFQDLMPG---QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY--HAVFWFALVMIIATLF-CLLRIKDV 393 (393)
T ss_pred HHHHHhCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHH-HHHhhcCC
Confidence 456788875 367889999999999999999999998887663 3467777877777665 45566775
No 47
>PRK12382 putative transporter; Provisional
Probab=99.46 E-value=8.5e-13 Score=134.78 Aligned_cols=136 Identities=17% Similarity=0.090 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...+++...+.+++.+++.||+|+|+....+..+++++++...+.. + .+..++...+.|+
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~ 314 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP----T----------------AWVALAGAALTGA 314 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc----c----------------HHHHHHHHHHHHH
Confidence 3445666677788999999999999999888777776665443322 1 2333445566777
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+.+.....=.+.+.|..|++ .+|+.+|+.+....+++.+.+...|.+.+..|. ...|.+.+++.+++.+...+..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 315 GCSLIFPALGVEVVKRVPSQ--VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY--PSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHhHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHHhhcc
Confidence 77654433234567777765 678889999999999999999999999887773 35789999999888887665543
No 48
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.46 E-value=2e-12 Score=133.00 Aligned_cols=280 Identities=13% Similarity=0.127 Sum_probs=161.7
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++......+..+++.|.+|+|+|+++.++.+....+|..+|..++... . . ..||+.|.+.+
T Consensus 108 l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l-----~-----~------~g~~~~f~~~~ 171 (400)
T PRK11646 108 LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWL-----L-----Q------YDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H------hhHHHHHHHHH
Confidence 344444445566789999999999999999999999999999998888651 1 0 26889998887
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
+..+++.++..+..||++. ++.+
T Consensus 172 ~~~~~~~i~~~~~~~~~~~---~~~~------------------------------------------------------ 194 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKL---STVR------------------------------------------------------ 194 (400)
T ss_pred HHHHHHHHHHHHhCCcccc---cccc------------------------------------------------------
Confidence 7655544443444554210 0000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+ +..+.+++++++ |+ ++..++..+..+........+.+.|+.+ ..+ ++ . ..| +.
T Consensus 195 -~----~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~-----------~--~~g-~l 248 (400)
T PRK11646 195 -T----PVREGMTRVLRD----KR-FVTYVLTLTGYYMLAVQVMLMLPIMVND-IAG-SP-----------S--AVK-WM 248 (400)
T ss_pred -h----hhHHHHHHHHcC----ch-HHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcC-Cc-----------h--HHH-HH
Confidence 0 011123333322 22 3333333332222222233455555433 211 11 1 122 22
Q ss_pred HHHHHHHHHHHhhhHHHhh-hhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 286 LLLNSVVLGVSSFLIEPMC-RWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~-d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
..+.++.......+..++. ||++.|+....+.+++++++..+.+.. + ....++...++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----~----------------~~~~~~~~~l~~ 308 (400)
T PRK11646 249 YAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----N----------------LQQLFTLICLFY 308 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHH
Confidence 2334444444444455555 456666666677666666554443332 1 122233334455
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc--cchhhHhHHHHHHHHHHHHhhe
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG--GNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~--~~~~~f~~~a~~~liaa~~v~~ 442 (453)
++.+.....-.+++.|..|++ .+|+.+|+.|....+++.+.+...|.+.+..|+ .....++..+++++++++....
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 309 IGSIIAEPARETLSASLADAR--ARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYW 386 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcc--cchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHH
Confidence 665554444446788888875 678889999999999999999999999877542 1134577777777777765444
Q ss_pred eccC
Q 012918 443 KLPH 446 (453)
Q Consensus 443 ~vpe 446 (453)
...+
T Consensus 387 ~~~~ 390 (400)
T PRK11646 387 QFSQ 390 (400)
T ss_pred HHhh
Confidence 3433
No 49
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.46 E-value=3.5e-12 Score=131.09 Aligned_cols=176 Identities=13% Similarity=0.010 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.++..++..++...+.+.+..|.+.|+.+ ++.++ . + .+ +......+...+.+.+.+++.||+||
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~---------~-~---~~-~~~~~~~~~~~ig~~~~g~l~dr~~~ 286 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE--LGFST---------S-E---WL-QIWGTFFFTNIVFNVIFGIVGDKLGW 286 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCh---------h-H---HH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35555566666666777778888887654 22221 1 1 11 23344557778888999999999999
Q ss_pred chhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCC
Q 012918 310 RLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (453)
Q Consensus 310 r~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~ 388 (453)
|+... .+.+..+++.....+......+ ..+...+...+.|++.+..... .+++.|..|+ .
T Consensus 287 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~---~ 347 (402)
T TIGR00897 287 MNTVRWFGGVGCGIFTLALYYIPQHFGH---------------SFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK---H 347 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCC---------------cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc---h
Confidence 88764 3333333322222222110001 1222333445566655543222 2455665553 4
Q ss_pred cceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 389 ~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
+|+.+|+.|....+++.+.+.+.|.+.+..|.. .+|++.+++.+++++...+
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~--~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAI--GVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999887743 5788899888888876654
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.46 E-value=1.8e-12 Score=132.31 Aligned_cols=279 Identities=16% Similarity=0.039 Sum_probs=153.9
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++......+..+++.|..|+++|+++.++.+....+|..++..++... .+ ...||+.|.+.++
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l--~~-------------~~g~~~~~~~~~~ 165 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI--ML-------------KFPWQSLFYTMAA 165 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------------CcChHHHHHHHHH
Confidence 34444556677899999999999999999999999888888888776531 00 1258898888877
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..+++.++..+..||++... +++.
T Consensus 166 ~~~i~~~~~~~~~~~~~~~~--~~~~------------------------------------------------------ 189 (392)
T PRK10473 166 MGILVLLLSLFILKETRPAR--APAA------------------------------------------------------ 189 (392)
T ss_pred HHHHHHHHHHHHcCCCCCcc--cCCc------------------------------------------------------
Confidence 76666666666678764211 0000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+ ......++.+++ +.++..++..++.+.+...+..+.+.++.+ .++-+ + ......+
T Consensus 190 ~----~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~------------~--~~~~~~~ 245 (392)
T PRK10473 190 S----SKPRENSESLLN-----RFFLSRLVITTLSVTVILTFVNTSPVLLME-QMGFS------------R--GEYAIIM 245 (392)
T ss_pred c----chHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HcCCC------------H--HHHHHHH
Confidence 0 000111222221 223333444444454444444444443322 11111 1 1112344
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
..+++...+.+++.+++.||+|||+.+..+..+..++++...+... ....+..+.+.+.+
T Consensus 246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~g 305 (392)
T PRK10473 246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS--------------------HAVSLFGITLICAG 305 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Confidence 5667778888899999999999999999888777766655444321 11111122222222
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH--hheec
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV--ATLKL 444 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~--v~~~v 444 (453)
.+..... ....+..|.+ +.. |+.+....++|.+.+.+.+.+.+..|.. ......+.+.++..+. ..++.
T Consensus 306 ~~~~~~~--~~~~~~~~~~-~~~----g~~~~~~~~~~~~g~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 376 (392)
T PRK10473 306 FSVGFGV--AMSQALGPFS-LRA----GVASSTLGIAQVCGSSLWIWLAAVLGIS--AWNMLIGILIACSIVSLLLILFV 376 (392)
T ss_pred HHHHhHH--HHHHHhccCc-ccc----cHHHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHhc
Confidence 2221111 2333444543 233 4555566788888888888887777643 2333444433332222 23345
Q ss_pred cCCCC
Q 012918 445 PHLSS 449 (453)
Q Consensus 445 pet~g 449 (453)
|+.+.
T Consensus 377 ~~~~~ 381 (392)
T PRK10473 377 APGRP 381 (392)
T ss_pred CCCCc
Confidence 64443
No 51
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.45 E-value=3.1e-12 Score=131.42 Aligned_cols=272 Identities=12% Similarity=0.047 Sum_probs=154.1
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
...+..++++|..|+|+|++++++......+|.++|..++.. .. +. ...||..|.+.++..+++.+
T Consensus 111 ~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~-----l~----~~-----~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 111 QDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW-----LA----DR-----VLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH-----HH----hc-----ccCHHHHHHHHHHHHHHHHH
Confidence 334689999999999999999999988778888887655532 10 00 02699999997777655544
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
. .+.+||++..+.++.+ ..+ +.
T Consensus 177 ~-~~~~~e~~~~~~~~~~-------------------------------------------------~~~--------~~ 198 (402)
T PRK11902 177 T-TLWAPEPEVPARPPRS-------------------------------------------------LGE--------AV 198 (402)
T ss_pred H-HHhcCCCcccccccch-------------------------------------------------hHH--------HH
Confidence 3 4567776432110000 000 01
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHH-HH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNS-VV 292 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s-~~ 292 (453)
...+++++++ |.++.+++..++...+...+..+.+.++.+ .++.+ .+ ..| +.+...+ +.
T Consensus 199 ~~~~~~l~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~~G~~-----------~~--~~g-~~~~~~~~~~ 258 (402)
T PRK11902 199 VGPLRDFFSR-----RGAWALLLLIVLYKLGDAFAGSLSTTFLIR-GAGFS-----------AG--EVG-IVNKTLGLAA 258 (402)
T ss_pred HHHHHHHHhC-----cCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCC-----------HH--HHH-HHHhHHHHHH
Confidence 1223333332 334444444443333222111122222211 11211 11 122 2222223 34
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH----HHhccchh
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF----TLLGFPLA 368 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Gi~~a 368 (453)
..+..++.+++.||+|+|+....+....+++.+......... + + .+.+++.. ...|+.++
T Consensus 259 ~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-~------------~---~~~~~~~~~~~~~~~g~~~~ 322 (402)
T PRK11902 259 TIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-K------------H---LWTMALAIGIENLCGGMGTA 322 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-C------------c---HHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999988776655554433322222110 1 1 11222221 34566677
Q ss_pred hhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 369 ~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
........++.+.+|. ++.++.+....+++++.+...|.+.+.+|. ...|.+++++++++.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~--~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 323 AFVALLMALCNRSFSA------TQYALLSALASVGRVYVGPTSGYLVEAYGW--PGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHhcCCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHH
Confidence 7676666677766664 345677777778888888888888888884 3579999999988877653
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.45 E-value=1.8e-12 Score=132.55 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...+++...+..++.+++.||+|+|+....+..++++++....+.. + .+..++...+.|+
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~G~ 314 (399)
T PRK05122 255 LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP----S----------------PWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHH
Confidence 3455666777788899999999999998888777776665444332 1 2233445566777
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+.+.....-.+.+.|..|++ .+|+.+|+.+....+++.+.+...|.+.+..|. ...|.+.+++.+++.++.. +.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~-~~~ 389 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQ--NRGAALGAYSVFLDLSLGITGPLAGLVASWFGY--PSIFLAAALAALLGLALTW-LLY 389 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHH-Hhc
Confidence 77754433334566777765 678889999999999999999888988877763 3578888888888776554 445
Q ss_pred CCCCC
Q 012918 446 HLSSN 450 (453)
Q Consensus 446 et~g~ 450 (453)
+.++|
T Consensus 390 ~~~~~ 394 (399)
T PRK05122 390 RRAPR 394 (399)
T ss_pred ccccc
Confidence 55444
No 53
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.45 E-value=1.2e-12 Score=134.86 Aligned_cols=296 Identities=14% Similarity=0.076 Sum_probs=160.1
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++.........+++.|..|+++|+++.++.+...++|.+++..+.... .. ...||+.|.+..
T Consensus 115 l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l---------~~------~~~w~~~f~i~~ 179 (426)
T PRK12307 115 IVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF---------AE------AYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH---------cc------cCCHHHHHHHHH
Confidence 445555666778899999999999999999999999999988886554320 01 136999998876
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.++.+.+ ....||++.+..++.+ . +.++ .
T Consensus 180 ~~~~~~~~~-~~~~p~~~~~~~~~~~---------~--------------------------------~~~~----~--- 210 (426)
T PRK12307 180 LPVLLVIYI-RARAPESKEWEEAKLS---------G--------------------------------KGKH----S--- 210 (426)
T ss_pred HHHHHHHHH-HHHCCCChHHHHhhhh---------c--------------------------------cccc----c---
Confidence 664333221 1223343221110000 0 0000 0
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHH--HHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAM--HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l--~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
+.........+++++++ |+.. ..++...++.+.+.+.+..+.++|+.+. +.+ . ....
T Consensus 211 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~------------~--~~~~ 269 (426)
T PRK12307 211 -QSAWSVFSLSMKGLFNR----AQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE--GFD------------T--GVVS 269 (426)
T ss_pred -ccchhhhhHHHHHHHhh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC------------H--HHHH
Confidence 00000011233444432 2211 1112222322323333445566665431 111 1 1112
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHH--
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT-- 361 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 361 (453)
..+..+++...+.+++.+++.||+|||+++..+.++.++.++...... ++ +. .....+.+.
T Consensus 270 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~--~~~~~~~~~~~ 332 (426)
T PRK12307 270 NLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP----QD-----------NY--LLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----cc-----------cH--HHHHHHHHHHH
Confidence 334556677788889999999999999998887766554443322221 10 10 111111111
Q ss_pred HhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 362 ~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
..+.+.+.. ...++.|.+|.+ .+|+.+|+.+....+++.+.+.+.|.+.+..|... ..+++.++.++++.....
T Consensus 333 ~~~~~~~~~---~~~~~~~~~p~~--~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~-~~~~~~~~~~~~~~~~~~ 406 (426)
T PRK12307 333 ATNVGVGGL---VPKFLYDYFPLE--VRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA-ALTFIVAFWTATILLIIG 406 (426)
T ss_pred HhcccHhHH---HHHHHHHhCcHH--HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH-HHHHHHHHHHHHHHhhcc
Confidence 111222222 224778999975 67888999999999999999999999887776332 234444444444444444
Q ss_pred eeccCCCC
Q 012918 442 LKLPHLSS 449 (453)
Q Consensus 442 ~~vpet~g 449 (453)
+..||+.+
T Consensus 407 ~~~~~~~~ 414 (426)
T PRK12307 407 LSIPDRLK 414 (426)
T ss_pred ccCChhhh
Confidence 55787643
No 54
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.45 E-value=3.4e-13 Score=132.53 Aligned_cols=332 Identities=12% Similarity=0.113 Sum_probs=186.4
Q ss_pred hcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHH
Q 012918 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (453)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~ 128 (453)
++... ....-++-.|..|..||..-.-+. .+..+|.+...++..+ .... -.|||......+|+
T Consensus 178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~----vm~~-----------~gwr~~l~~~~~pl 240 (528)
T KOG0253|consen 178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWG----VMSN-----------FGWRYLLFTSSTPL 240 (528)
T ss_pred ccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHH----HHHh-----------hhHHHHHHHHHhHH
Confidence 34433 333556678999999998877777 7778888887766643 1221 25888877777886
Q ss_pred HHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCC-CCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKH-DMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 129 ~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
. .++..++.+||+|+....+++.++|.+.|.+-. +++. +.++..-.+. ...++++|....++++...+
T Consensus 241 ~-~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiA-----rmNg~qlplgvl~~s----~~~~~e~e~~~~~~~~~~a~- 309 (528)
T KOG0253|consen 241 M-FAARFLVWVYESPRFYLAKGDDYKALETLHKIA-----RMNGKQLPLGVLESS----AIDRQEQEESDLDDSKSSAA- 309 (528)
T ss_pred H-HHHHHHhhcccCcchhhhcCChHHHHHHHHHHH-----HhcCCCCCcceeeee----hhhhhhhhhhchhhhhhccc-
Confidence 4 566779999999998876666555544432211 1111 1111110000 00011111111111221110
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecC-C---------CCC-----CCh--
Q 012918 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHG-D---------PKG-----NDH-- 270 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g-~---------p~~-----~~~-- 270 (453)
++.....++++. +.+|+--+.+..+|+| +.+.+|..--+..+.|+. | |.. |.+
T Consensus 310 ---ke~rg~~~nLls------p~lrkttlllw~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s 379 (528)
T KOG0253|consen 310 ---KEVRGGTTNLLS------PKLRKTTLLLWRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS 379 (528)
T ss_pred ---cccccchHhhcC------hHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence 123444555542 3344434444445555 445555443332223331 1 100 000
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCch
Q 012918 271 EVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQ 350 (453)
Q Consensus 271 ~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (453)
..+.|. -+++-++.-+=..++.+.++||+|||+.+..+.++++++++........ +.
T Consensus 380 ~~~dYr--------dllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~r---------------n~ 436 (528)
T KOG0253|consen 380 VAKDYR--------DLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTR---------------NA 436 (528)
T ss_pred chhHHH--------HHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCc---------------ch
Confidence 122332 2344455556667888999999999999999999999887655544311 11
Q ss_pred hHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHH
Q 012918 351 AIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLAS 430 (453)
Q Consensus 351 ~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a 430 (453)
+.++ .+..=++...+ ..+-|..-.|++|...|.-| .|+.+.+.-++-++.+++. ...+.. ......+++
T Consensus 437 ~tvl-lf~arafisg~----fqvaYvYtPEVyPTavRatg--vGtcSsmaRIggI~~p~iA-~~~e~s---~sl~i~vy~ 505 (528)
T KOG0253|consen 437 YTVL-LFTARAFISGA----FQVAYVYTPEVYPTAVRATG--VGTCSSMARIGGIFSPVIA-MRAELS---TSLPIFVYG 505 (528)
T ss_pred hHHH-HHHHHHHHhch----heEEEEecCcccchhhhhcc--hhhhhhHHhhhhhhhhHHH-HHhccc---eeehHHHHH
Confidence 1111 11122333333 34455688999999855544 8888888888888888877 222221 123678888
Q ss_pred HHHHHHHHHhheeccCCCCCCC
Q 012918 431 LSALAGGVVATLKLPHLSSNSF 452 (453)
Q Consensus 431 ~~~liaa~~v~~~vpet~g~~~ 452 (453)
.+++++++.++++=-|||||+.
T Consensus 506 ~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 506 ALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHHHHHHHheeeeeccCCCCC
Confidence 8899999988766559999985
No 55
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.45 E-value=5.5e-13 Score=139.88 Aligned_cols=299 Identities=9% Similarity=0.092 Sum_probs=169.0
Q ss_pred hcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHH
Q 012918 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFL 128 (453)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~ 128 (453)
++......+..+++.|..|+++|+++.++.+...++|..++..+.... +... ..+.||..|.+.+++.
T Consensus 134 ~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~-~~~~-----------~~~~~~~~f~~~g~~~ 201 (467)
T PRK09556 134 FFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG-ANYF-----------FDGHVIGMFIFPSIIA 201 (467)
T ss_pred HHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH-HHhh-----------ccCcchhHHHHHHHHH
Confidence 333445566778999999999999999999999999999887665321 1111 1135888887766554
Q ss_pred HHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCC
Q 012918 129 TLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGS 208 (453)
Q Consensus 129 ~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (453)
++..++..+.+||+|.......+ ++..+++ ..++.+ .. +
T Consensus 202 ~~~~i~~~~~~~~~p~~~~~~~~----~~~~~~~----------------------------~~~~~~----~~----~- 240 (467)
T PRK09556 202 LIIGFIGLRYGSDSPEELGWGKA----EEIFGEP----------------------------ISEEDK----ET----E- 240 (467)
T ss_pred HHHHHHHHHhCCCChhhcCCCCh----hhcccCc----------------------------cchhhh----cc----c-
Confidence 44444445556766532111000 0000000 000000 00 0
Q ss_pred CCCCchhhHHHHHHH-hccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 209 FNDGPGAVLVNLLTS-LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
..+.+.++.+.. .. ..+.++.+++..++...++..+..+.+.|+.+ .++-++ ....+...
T Consensus 241 ---~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-~~g~s~--------------~~a~~~~~ 301 (467)
T PRK09556 241 ---STDMTKWQIFVEYVL-KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-ELGFSK--------------EDAINTFT 301 (467)
T ss_pred ---cccCcHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCH--------------HHHHHHHH
Confidence 000111221111 11 12456667777777766666777788877654 333321 11123445
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc-
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP- 366 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~- 366 (453)
...+...+.+++.+++.||+|||+....+.....++.....+.. .+ + .....+.....|+.
T Consensus 302 ~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~---~~------------~---~~~~~~~~~~~G~~~ 363 (467)
T PRK09556 302 LFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH---AT------------S---EYMYLASLFALGFLV 363 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh---cC------------c---HHHHHHHHHHHHHHH
Confidence 56677888999999999999999877665443332221111111 01 1 22222233334432
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHH-HHHHHhhcccccee------------cccccchhhHhHHHHHH
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDA------------LFGGGNIPAFVLASLSA 433 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l-~q~i~s~~~g~l~~------------~~g~~~~~~f~~~a~~~ 433 (453)
.+... ...+.+.|..|++ .+|+..|+.|...++ +..+.+.+.|.+.+ ..| ....|.+.+++.
T Consensus 364 ~~~~~-~~~~~~~~~~p~~--~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f~~~~~~~ 438 (467)
T PRK09556 364 FGPQL-LIGVAAVGFVPKK--AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTFAALDIAA 438 (467)
T ss_pred hhHHH-HHHHHHHhhcchh--hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHHHHHHHHH
Confidence 23222 1224566999875 688889999999886 77888888888887 333 235788888888
Q ss_pred HHHHHHhhe
Q 012918 434 LAGGVVATL 442 (453)
Q Consensus 434 liaa~~v~~ 442 (453)
++++++...
T Consensus 439 ~~~~~~~~~ 447 (467)
T PRK09556 439 IGCICLMAI 447 (467)
T ss_pred HHHHHHHHH
Confidence 877666543
No 56
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.42 E-value=6.3e-12 Score=128.10 Aligned_cols=267 Identities=12% Similarity=0.120 Sum_probs=159.5
Q ss_pred hhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhhe
Q 012918 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (453)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it 135 (453)
.+..+.++|..|+++|+++.++.+....+|..++..++... .. ...||++|.+.+++.++..++.
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l-----~~----------~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI-----YT----------AGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----------ccchHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999888651 10 1369999998555555555556
Q ss_pred eeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchh
Q 012918 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (453)
Q Consensus 136 ~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (453)
.+.+||+|++..+..+ . + +...
T Consensus 162 ~~~lp~~p~~~~~~~~-----------------------------------------~--~---------------~~~~ 183 (368)
T TIGR00903 162 LAALPALPFQAAEGFG-----------------------------------------F--K---------------DAVK 183 (368)
T ss_pred HHHcCCCCCCCCCCcc-----------------------------------------h--H---------------HHHH
Confidence 6788998754211000 0 0 0011
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHH
Q 012918 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (453)
Q Consensus 216 ~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i 295 (453)
.+++++++ +.++.+++..++...+++.+..|.++|+.+. + |+. ..+.... +..+...+
T Consensus 184 ~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g------------~s~--~~~~~~~-l~~~~g~~ 241 (368)
T TIGR00903 184 EFGALAGR-----KDLWIIGAILGFGVALFDNLAIWLEAALRPA--G------------LED--IAGDAVA-LAILAGLI 241 (368)
T ss_pred HHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C------------CCh--HHHHHHH-HHHHHHHH
Confidence 23444432 5567788888888888888888889887431 1 111 1121111 11122222
Q ss_pred HhhhHHHhhhhcC---cchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhc
Q 012918 296 SSFLIEPMCRWIG---SRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (453)
Q Consensus 296 ~s~~~~~l~d~~g---rr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (453)
. .+.+.||+. +|+.+.. ..+..++++....+.. + ....+++..+.|+......
T Consensus 242 g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 242 G---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL----N----------------RLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred H---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc----c----------------cHHHHHHHHHHHHhhhhhH
Confidence 2 355666654 3444443 2222232222211111 1 1112223333333333332
Q ss_pred cccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 372 ~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
.+=+++.+|.+|++ .+|+.+|+.|....+..++.+...+.+.. | ....|.+.++..+++++.+. +.|+.
T Consensus 299 ~~~~~~~~~~~p~~--~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~--~~~~f~~~~~~~~i~~~~~~-~~~~~ 367 (368)
T TIGR00903 299 AIIMDWIGKFCDKE--LHGKAAGAIGFTSRAISVALALAAMLFIS--S--AEAYFTFLAILITIAFAIAL-LLPND 367 (368)
T ss_pred HHHHHHHHHhcchh--hcCcccchhhHHHHHHHHHHHHHHHHHhc--C--HHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence 33335889999986 56777999999999999888887776663 3 23478888999999888764 44654
No 57
>TIGR00895 2A0115 benzoate transport.
Probab=99.41 E-value=5.8e-13 Score=134.68 Aligned_cols=286 Identities=12% Similarity=0.021 Sum_probs=164.3
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
++..+..++......+..+++.|..|+++|+++.++.+....+|..+|..++... . . ...||..|
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-----~----~------~~g~~~~~ 174 (398)
T TIGR00895 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL-----I----P------VFGWRSLF 174 (398)
T ss_pred HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH-----h----h------cccceeeh
Confidence 3444566777778889999999999999999999999999999999988776431 1 1 02577778
Q ss_pred HHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccc
Q 012918 122 LVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKK 201 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (453)
.+.++..+++..+.....||+|.+..++++ ++.++ ..++...+. .++..++ .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~----------------~~~~~~~---~ 226 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRR--------IVNAIAPQM----------------QAEAQSA---L 226 (398)
T ss_pred hhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHH--------HHHHHHHhc----------------ccccccc---c
Confidence 877544445555666778887754322211 00000 000000000 0000000 0
Q ss_pred ccccCCCCCCCchhhHHHHHHHhccC--CHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhh
Q 012918 202 AEDTNGSFNDGPGAVLVNLLTSLRHL--PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGV 279 (453)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv 279 (453)
.+ + .......++.++.++.. .+....+++..++...+.+.+..|.+.+..+ ++.+ .
T Consensus 227 ~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~------------~-- 284 (398)
T TIGR00895 227 PE---Q---KATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE--LGFS------------L-- 284 (398)
T ss_pred cc---c---ccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC------------H--
Confidence 00 0 00001112222222111 1223334444555555665555555533221 1211 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 280 REGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 280 ~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
....+.....++...+.+++.+++.||+|||++..... +.+++........ + .....++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~---------------~~~~~~~~ 344 (398)
T TIGR00895 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTL----F---------------SPTLLLLL 344 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHh----h---------------CHHHHHHH
Confidence 11123455666778888999999999999995544333 2222222222111 1 12334455
Q ss_pred HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccc
Q 012918 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l 414 (453)
..+.|++++......+++++|..|++ .+|+.+|+.+....++..+.+.+.|.+
T Consensus 345 ~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 345 GAIAGFFVNGGQSGLYALMALFYPTA--IRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 66788888888888889999999976 567779999999999999988887764
No 58
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.41 E-value=3.5e-12 Score=131.01 Aligned_cols=271 Identities=15% Similarity=0.091 Sum_probs=160.3
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++.........+++.|..|+++|++++++.....++|..+|..++... .+ .-.||+.|.+.++
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l--~~-------------~~gw~~~f~~~~~ 182 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFL--GE-------------LIGWRNVFNAAAV 182 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------------hcCHHHHHHHHHH
Confidence 45555666778899999999999999999999999999999988887641 11 0259999988777
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..+++.+......||+|.++ .+
T Consensus 183 l~~~~~l~~~~~~p~~~~~~---~~------------------------------------------------------- 204 (394)
T PRK10213 183 MGVLCIFWIIKSLPSLPGEP---SH------------------------------------------------------- 204 (394)
T ss_pred HHHHHHHHHHHHCCCCCccc---cc-------------------------------------------------------
Confidence 66555444333456543100 00
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
.....++.++ . |.++...+..++...+.+.+..|.++++.+ .++.+ . ......+
T Consensus 205 ------~~~~~~~~l~----~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s------------~--~~~g~~~ 258 (394)
T PRK10213 205 ------QKQNTFRLLQ----R-PGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-LAGFG------------V--DGLTLVL 258 (394)
T ss_pred ------chhHHHHHhc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------h--hHHHHHH
Confidence 0011122222 2 334444444444444444444454333222 12212 1 1112345
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
..+++...+.+++.+++.||. +|+.+..+..+..++........ + ..+...+...+.|++
T Consensus 259 ~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~~~l~~~~----~---------------~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 259 LSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSALVLTLWG----S---------------DKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHh----h---------------hHHHHHHHHHHHHHH
Confidence 556677788889999999995 44544444333333222222111 1 123334455667888
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
++.....--+++.+..|++ .+...++......+++.+.+.+.|.+.+..|.. ..+..+++..++.++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~ 388 (394)
T PRK10213 319 FALVPVGWSTWITRSLADQ---AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLT--SPLMLSGTLMLLTALLVT 388 (394)
T ss_pred HHhhhHHHHHHHHHHCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh--hHHHHHHHHHHHHHHHHH
Confidence 7776665555677777743 445566777777889999999999998887743 367777766666665554
No 59
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.39 E-value=1.1e-11 Score=126.46 Aligned_cols=274 Identities=16% Similarity=0.138 Sum_probs=157.5
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++.........+++.|..|+++|+++.++......+|..+|..++... . + ..+||+.|.+.++
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l-----~----~------~~gwr~~f~~~~~ 165 (382)
T PRK10091 101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL-----S----Q------EFSWRYTFLLIAV 165 (382)
T ss_pred HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH-----h----h------hccHHHHHHHHHH
Confidence 44444555566788899999999999999999888888888887776431 0 0 1369999999887
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..++..+...+..||++. ++++
T Consensus 166 ~~~~~~~~~~~~lp~~~~---~~~~------------------------------------------------------- 187 (382)
T PRK10091 166 FNIAVLASIYFWVPDIRD---EAKG------------------------------------------------------- 187 (382)
T ss_pred HHHHHHHHHHHhCCCCCc---cccc-------------------------------------------------------
Confidence 765555544555676431 0000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+.+..+ +..+ -| ..+.+....++...+.+....|.+.++.+ .++.+ + ....+..
T Consensus 188 -----~~~~~~----~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s------------~--~~~~~~~ 241 (382)
T PRK10091 188 -----GLREQF----HFLR-SP-APWLIFAATMFGNAGVFAWFSYIKPYMMF-ISGFS------------E--TSMTFIM 241 (382)
T ss_pred -----CHHHHH----HHhc-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC------------H--HHHHHHH
Confidence 000111 1111 12 22333333444444544444455555432 22222 1 1222455
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
..+++...+..++.+++.||+|+|++...+..+++++++.+.... + . ....++.....+++
T Consensus 242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~----~------------~---~~~~~~~~~~~~~g 302 (382)
T PRK10091 242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG----G------------M---KTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH----h------------h---HHHHHHHHHHHHHH
Confidence 667778888899999999999999999888777776664443322 1 0 11122222223333
Q ss_pred hhhhcc-ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 367 LAITYS-VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 367 ~a~~~~-vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
...... ....+..+..|. |..|. +..+....+++.+.+...|.+.+..++.. +.+.+.++.++++..+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGG--ELLGA--AGGQIAFNLGSAIGAYCGGMMLTLGLAYN-YVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHhhhHHHHHHHHHhCCcc--hHHHH--HHHHHHHHHHHHHHHHHhHHHHHcccCcc-hHHHHHHHHHHHHHHHHHHH
Confidence 322221 111233333332 34453 34467889999999999999988655443 56777777776655544443
No 60
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.39 E-value=1.4e-11 Score=126.40 Aligned_cols=278 Identities=12% Similarity=0.027 Sum_probs=156.7
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
.-++.........++++|.+|+|+|++++++.+....+|.++|..+++.. . + ..|+..+.+.+.
T Consensus 98 ~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l-----~-----~------~~~~~~~~i~~~ 161 (393)
T PRK11195 98 VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL-----A-----D------PHAEAALAVCAL 161 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-----H------HHHHHHHHHHHH
Confidence 44444555566789999999999999999999999999999999888752 1 0 125566666555
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..+++. +..+.+||+|.+..+++. + .....+
T Consensus 162 ~~~~~~-~~~~~l~~~~~~~~~~~~-~-------------------------------------~~~~~~---------- 192 (393)
T PRK11195 162 IYLLAA-LFNLFIPRLGARRPGQSW-N-------------------------------------PIALLR---------- 192 (393)
T ss_pred HHHHHH-HHHhcCCCCcccccccCC-C-------------------------------------HHHHHH----------
Confidence 443333 334567876532111000 0 000000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+....++.+++ -|. ++...+..++.|.....+.+..+.|+.+ .++.++ . ..| +.+
T Consensus 193 -----~~~~~~~~l~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lg~s~---------~----~~G-~~~ 247 (393)
T PRK11195 193 -----DFFHACRVLWR----DKL-GRFSLAGTTLFWGAGATLRFLVLAWAPV-ALGITL---------N----QPA-YLQ 247 (393)
T ss_pred -----HHHHHHHHHHh----Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCh---------h----HHH-HHH
Confidence 00111222222 222 3333333334455555555555556543 344331 1 123 345
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
..+++...+.+++.+++.||.++|++...|. +.++.+....+.. + .+...+...+.|++
T Consensus 248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~----~----------------~~~~~~~~~~~G~~ 306 (393)
T PRK11195 248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQH----S----------------LLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHh----H----------------HHHHHHHHHHHHHh
Confidence 5677778888999999999999988877774 3333332222211 1 22233444456666
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
.+.....-.+++.|. ++++.++|...|+.|+...+.+.+...+++.+ ...|-. +.+.+.++..+++...
T Consensus 307 ~g~~~~~~~~~~q~~-~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 307 GGFFVVPMNALLQHR-GHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP--VVAVIVGFGLLVALAM 375 (393)
T ss_pred hhhhhhhHHHHHHhh-CcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC--HHHHHHHHHHHHHHHH
Confidence 665442222344444 43323478889999999999999998888755 445543 3455555544444443
No 61
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.38 E-value=5.9e-12 Score=145.96 Aligned_cols=299 Identities=13% Similarity=0.011 Sum_probs=175.6
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
+.++.........+++.|..|+++|++++++.+...++|.++|..++++. .. ...|++.|.+.++
T Consensus 118 ~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l-----~~----------~~~~~~~~~~~~~ 182 (1140)
T PRK06814 118 MGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLA-----TI----------SGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHH-----Hh----------ccccHHHHHHHHH
Confidence 34444455667999999999999999999999999999999999998752 11 1358888855555
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..+ ..++..+.+||++........ .
T Consensus 183 ~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~---- 207 (1140)
T PRK06814 183 IAV-LGWLASLFIPKTGNAAPDLKI--------------------------------------------------D---- 207 (1140)
T ss_pred HHH-HHHHHHhhCCCCCCCCCCCee--------------------------------------------------c----
Confidence 443 334455667765421110000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
. .......+.++..++ .+.++.+.+..++.|+....+..+.+.|+.+ .++.++ . ..| +.+
T Consensus 208 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~---------~----~~g-~~~ 267 (1140)
T PRK06814 208 R----NIIRSTITLLKYAKA-DKRIWLAILGISWFWLVGAVVLSQLPLLAKE-TLGGDE---------N----VAT-LFL 267 (1140)
T ss_pred c----chHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HcCCch---------H----HHH-HHH
Confidence 0 000111122222222 2456666666666666666666777777654 344331 1 122 445
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcc--cCCCCchhHHHHHHHHHHHhc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIE--HGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G 364 (453)
..+++..++.+++.+++.|+.++++....+.++.+++.+.+.+.............. .-...+ ..+.+++...++|
T Consensus 268 ~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 345 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR--HGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc--ccHHHHHHHHHHH
Confidence 667778888999999999888877766666655555444333320000000000000 000000 1233444555677
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
++.+..+..-.+++.+..|++ .+|+.+|+.|+...+++.+.+...|.+.+...+. ...+.+.+++.++.++..
T Consensus 346 ~~~~~~~~~~~~~~~~~~p~~--~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 418 (1140)
T PRK06814 346 AAGGLYIVPLFAALQAWANPA--HRARVIAANNVLNAAFMVAGTIILALLQALGFSI-PWIILFIALANLIVAILI 418 (1140)
T ss_pred HHHHHhHHHHHHHHHhhCCcc--cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHH
Confidence 777776666678889999886 7888999999999999999998888776433222 234444444444444333
No 62
>PRK10054 putative transporter; Provisional
Probab=99.38 E-value=3.6e-12 Score=130.97 Aligned_cols=273 Identities=10% Similarity=0.016 Sum_probs=161.0
Q ss_pred chhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q 012918 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (453)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~i 134 (453)
.....+++.|..|+++|+++.+++....++|..+|..++... . . ..|+..|.+.++..+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l-----~----~-------~g~~~~f~~~~~~~~i~~i~ 177 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL-----V----M-------QSINLPFWLAAICSAFPLVF 177 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----H-------hccCcHHHHHHHHHHHHHHH
Confidence 334788899999999999999999999999999998777641 1 0 24788888877776655444
Q ss_pred eeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCch
Q 012918 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (453)
Q Consensus 135 t~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (453)
..+.+||.+..+ +.+ + ...
T Consensus 178 ~~~~~~~~~~~~--~~~-~----------------------------------------------------------~~~ 196 (395)
T PRK10054 178 IQIWVQRSEKAI--ATE-T----------------------------------------------------------GSV 196 (395)
T ss_pred HHHHHhcccccc--ccc-h----------------------------------------------------------hhh
Confidence 444455543110 000 0 000
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHH
Q 012918 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~ 294 (453)
...++.++ . |.++.+.+..++...+...+..+.+.|..+ ..+. ..++. ..| ..+..+++...
T Consensus 197 ~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~-~~g-~~~~~~~~~~~ 258 (395)
T PRK10054 197 WSPSVLLQ----D-KALLWFTCSGFLASFVSGAFASCISQYVMV-VADS----------DFAEK-VVA-VVLPVNAAMVV 258 (395)
T ss_pred hhhhhhcc----C-ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hccc----------chHHH-HHH-HHHHhhhhhee
Confidence 00111221 1 233334444444433333333333433221 1110 01111 122 33444555444
Q ss_pred HHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcccc
Q 012918 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (453)
Q Consensus 295 i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP 374 (453)
....+.+++.||.++|+....+..++++++....+.. + ..+...+....+|++.+.....-
T Consensus 259 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~~g~~~~~p~~ 319 (395)
T PRK10054 259 SLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----N---------------SLLLWGMSAAVFTVGEIIYAPGE 319 (395)
T ss_pred eehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----h---------------HHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566778999999999998888777766654443321 1 12223334455666665544444
Q ss_pred chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 375 ~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
++++.+..|++ .+|.+.|+.+ ..++++.+.+..+|.+.+..|.. ..|.+.+++..++.++..+.+.|
T Consensus 320 ~~~~~~~~p~~--~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T PRK10054 320 YMLIDHIAPPG--MKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW--SLFVILALAIVAAWLLMLKGMRA 386 (395)
T ss_pred HHHHHHhCCcc--cceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh--hHHHHHHHHHHHHHHHHHhcccc
Confidence 56788888875 5677788765 66789999999999999988743 36777777777676666665554
No 63
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.37 E-value=8.5e-12 Score=130.59 Aligned_cols=301 Identities=11% Similarity=0.075 Sum_probs=169.5
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++.........++++|..|+++|+++.++......+|.+++..++... . .. ...||..|.+.++
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l-----~----~~-----~~gw~~~f~i~~~ 206 (465)
T TIGR00894 141 QGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL-----C----ES-----WGGWPMIFYVFGI 206 (465)
T ss_pred HHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----hc-----cCCCCeehhhhhH
Confidence 44455556667889999999999999999999999999999988776531 0 00 0268999998887
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.++..++.....||+|....+.++. +.+.+ ++ ..+++.
T Consensus 207 ~~~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~i----------------------------~~--~~~~~~- 245 (465)
T TIGR00894 207 VGCAWSLLWFVFPADDPSIHPCISKF----------EKKYI----------------------------NS--SLQGQK- 245 (465)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCHH----------HHHHH----------------------------Hh--hccccc-
Confidence 76655555555677776432111000 00000 00 000000
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+ +...+..+++++++ +.++.+++..+....+++.+..|.+.|+.+ .++.++ . ..| +..
T Consensus 246 ~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~-~~g~s~---------~----~~g-~~~ 303 (465)
T TIGR00894 246 G--STRQSLPIKAIPKS-----LPVWAIWFAIFGHFWLYTILPTYLPTFISW-VLRVSG---------K----ENG-LLS 303 (465)
T ss_pred C--CCCCCCCHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCh---------H----HhH-HHH
Confidence 0 00112234554432 457777888888888888888899988765 333221 1 122 233
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHH---HHHHHHHHH---HHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAI---SNFIVFACM---ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~---g~~~~~i~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (453)
.+..+...+.+++.+++.||+++|+.... ......+++ ....+......+ + ....++++
T Consensus 304 ~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~ 368 (465)
T TIGR00894 304 SLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA------------A---FYLTIIIL 368 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------c---hHHHHHHH
Confidence 34556778888999999998865432210 001111111 111111100000 1 11122222
Q ss_pred HHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc-ccchhhHhHHHHHHHHHHHH
Q 012918 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-GGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 361 ~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g-~~~~~~f~~~a~~~liaa~~ 439 (453)
.+.+...+.....-.....|+.|. ..|..+|+.|+...++.++++.+.|.+.+..+ +....+|.+.++..+++.++
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~ 445 (465)
T TIGR00894 369 TLANAVSSGPLAGVLINSLDLAPR---FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIF 445 (465)
T ss_pred HHHHHHhhhhhhhhhhchhhcChh---HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 222222221111111233455553 68999999999999999999999998876432 11234688888888888876
Q ss_pred hhe
Q 012918 440 ATL 442 (453)
Q Consensus 440 v~~ 442 (453)
...
T Consensus 446 ~~~ 448 (465)
T TIGR00894 446 YLI 448 (465)
T ss_pred eee
Confidence 543
No 64
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.37 E-value=2.7e-12 Score=127.74 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=160.4
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
..+..++.........+++.|..|+|+|++++++.+....+|.++|..++... .+ ..+||+.|.+
T Consensus 92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l--~~-------------~~~~~~~~~~ 156 (352)
T PF07690_consen 92 RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFL--IS-------------YFGWRWAFLI 156 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-------------HCHHCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhh--hh-------------cccccccccc
Confidence 33555666677888999999999999999999999999999999998888652 11 1258999999
Q ss_pred HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccc
Q 012918 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (453)
.++..+++.++..+..+|+|....++++.++. ++..+
T Consensus 157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~------- 193 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPEPPPPRERESPKESE------------------------------------SKKPK------- 193 (352)
T ss_dssp HHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------------------HHH-------
T ss_pred ccchhhhhhhhHhhhhhhcccccccccccccc------------------------------------ccccc-------
Confidence 88887766654445566654333221110000 00000
Q ss_pred ccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
...+.++.++++ +.++.+.+..+...+.+..+..|.+.|+.+ .++.+ +.....
T Consensus 194 --------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-------------~~~~~~ 246 (352)
T PF07690_consen 194 --------PLKPGFKSLFKN-----PVLWILLIAFFLFFFVFSGFSFFLPLYLQE-VLGFS-------------GPSQAG 246 (352)
T ss_dssp --------CCCH-CTHHHHH-----HCCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHCC-------------THHHHH
T ss_pred --------cccccccccccc-----chhhhhhhhhhHHHHHHHHhhcccchhhhh-ccCCC-------------HHHHHH
Confidence 001112333333 122223333343444555566666665433 22211 112222
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+.+.++...+.+++.+++.||+++|+..........++.....+.... + .....++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~ 309 (352)
T PF07690_consen 247 LLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--S---------------SPVWLIIALFLI 309 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--C---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--h---------------hHHHHHHHHHHH
Confidence 34556667777778999999999999877776655555444433333211 0 123344456668
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVS 408 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s 408 (453)
|++.+.....-.+++.|..|++ .+|+.+|+.+....++.++.+
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 310 GFGFGIVFPILFSLIQELVPPE--YRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCHHHHHHHHCCCHTC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHCC
Confidence 8888888888788999999875 789999999999998887764
No 65
>PRK10504 putative transporter; Provisional
Probab=99.34 E-value=1.3e-11 Score=129.16 Aligned_cols=305 Identities=12% Similarity=0.034 Sum_probs=163.5
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++.........+++.|..|+++|+++.++......+|..+|..++... . + ..+||++|.+..
T Consensus 107 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l-----~----~------~~gw~~~f~~~~ 171 (471)
T PRK10504 107 LQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL-----V----E------YASWHWIFLINI 171 (471)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----H----h------hccHHHHHHHHH
Confidence 344444555667888999999999999999999999999998888776541 1 1 136999999987
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCccccccc-ccCCCCCCCCCCCCCCccc-----Ccccchhhhhcc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAIS-KSKHDMPAAPNANGNKVES-----GHESDANLKHIS 199 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 199 (453)
....++...+....||.+... .+.+.+...+.......+. ....+....|.+ ...... ..-.....+|
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 245 (471)
T PRK10504 172 PVGIIGAIATLMLMPNYTMQT---RRFDLSGFLLLAVGMATLTLALDGSKGLGLSP-LAIAGLVAVGVVALLLYLLHA-- 245 (471)
T ss_pred HHHHHHHHHHHHhCCCccccC---CCCChHHHHHHHHHHHHHHHHHhcCCcCCcch-HHHHHHHHHHHHHHHHHHHHH--
Confidence 766566665555555543211 1111000000000000000 000000000000 000000 0000000000
Q ss_pred ccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhh
Q 012918 200 KKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGV 279 (453)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv 279 (453)
+ +. + ++..++ ++++ .|.++..++..++.+.+.....++.+.|+.+ .++.++ .
T Consensus 246 ~-~~---~----~~~~~~-~l~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~---- 297 (471)
T PRK10504 246 R-NN---N----RALFSL-KLFR-----TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQI-GLGFSP---------F---- 297 (471)
T ss_pred h-cC---C----CCccCH-HHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCH---------H----
Confidence 0 00 0 011112 1222 2445666777777777766555555555432 222221 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 280 REGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 280 ~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
..| +.+..+.+...+...+.+++.||+|+|+++..+..+.+++...+.+... . + ......+.
T Consensus 298 ~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~------------~--~~~~~~~~ 359 (471)
T PRK10504 298 HAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL---L------------G--WYYLLPFV 359 (471)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc---c------------c--cHHHHHHH
Confidence 122 3444555666667788999999999999999887777665544433220 0 1 11222223
Q ss_pred HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc
Q 012918 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g 419 (453)
+.+.|++.+.....-..++.+..|++ ..|...|+.|+...+++.+.+.+.|.+++..|
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPDN--LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555554444445777778765 67777999999999999999998888876655
No 66
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.33 E-value=3.3e-12 Score=131.94 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+..++.+++.||+|+|+.+..+.++.++++.+..+.. + ++...+...+.
T Consensus 266 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~----~----------------~~~~~~~~~l~ 325 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT----G----------------PLEVSILKLLH 325 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc----c----------------HHHHHHHHHHH
Confidence 334445566677888999999999999998888777777665544432 1 23334445566
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|+..+.........+.|..|++ .+++..++ .|+...++.++.+...|.+.+..|.. .+|.+.+++.+++.++..+
T Consensus 326 g~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~--~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 326 AFEVPFLLVGVFKYITLNFDVR--LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQ--GTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCcc--ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHHHHHHH
Confidence 7777666555556778888865 55655555 67888899999999999999888733 4788777777776665555
Q ss_pred eccCC
Q 012918 443 KLPHL 447 (453)
Q Consensus 443 ~vpet 447 (453)
.+++-
T Consensus 402 ~~~~~ 406 (420)
T PRK09528 402 TLSGD 406 (420)
T ss_pred HhcCC
Confidence 55443
No 67
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.33 E-value=8.2e-11 Score=120.81 Aligned_cols=278 Identities=12% Similarity=0.047 Sum_probs=154.9
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
......+++.|..|+++|.++.++......+|..+|..++... .+ ...||+.|.+.++..+++..
T Consensus 118 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l--~~-------------~~~w~~~~~~~~~~~~~~~~ 182 (406)
T PRK15402 118 IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL--IH-------------VLPWRGMFVLFAALAALSFF 182 (406)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------ccCccHHHHHHHHHHHHHHH
Confidence 3455778899999999999999988887778888877666431 00 12588888887777655555
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
...+..||++....++.+ .+ +.
T Consensus 183 ~~~~~~~~~~~~~~~~~~-------------------------------------------~~---------------~~ 204 (406)
T PRK15402 183 GLWRAMPETAGRVGEKLS-------------------------------------------LK---------------EL 204 (406)
T ss_pred HHHHhCCCCCcccccccc-------------------------------------------HH---------------HH
Confidence 444456665321100000 00 01
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
...++.+++ -| .++.+++..++...+...+..+.+.++.+ .++.++ . ..|. ......+..
T Consensus 205 ~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~---------~----~~g~-~~~~~~~~~ 264 (406)
T PRK15402 205 GRDYKLVLK----NR-RFVAGALALGLVSLPLLAWIALSPVILIS-GEQLSS---------Y----EYGL-LQVPVFGAL 264 (406)
T ss_pred HHHHHHHHc----Cc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCCH---------H----HHHH-HHHHHHHHH
Confidence 112233332 23 34444554444433333333334444322 122221 1 1221 122233456
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.+.+++.+++.||+++|+...++.+.++++++...+..... + + ......+.+.++|++.+.....
T Consensus 265 ~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~------------~--~~~~~~~~~~~~g~g~~~~~~~ 329 (406)
T PRK15402 265 IAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS-S------------H--AYLWLTAGLSLYAFGIGLANAG 329 (406)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc-c------------c--cHHHHHHHHHHHHHHHHHHhhh
Confidence 66788899999999999998888777766665444432110 0 0 1222344555677777665443
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
..+.. ...++ +.+|...++.+....+.+.+.+...+.+.+..|.. .....+.+++++..++..++.
T Consensus 330 ~~~~~-~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK15402 330 LYRLT-LFSSD--VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNG--LFNLFNLANGLLWLLLVRIFL 395 (406)
T ss_pred HHHHH-hhhcc--ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchH--HHHHHHHHHHHHHHHHHHHHh
Confidence 22332 22333 36889999999999999999999988887776633 223333334444444444433
No 68
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.33 E-value=2e-11 Score=127.87 Aligned_cols=292 Identities=14% Similarity=0.081 Sum_probs=168.0
Q ss_pred hhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHH
Q 012918 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (453)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~ 127 (453)
.++......|..+++.|..| ++|+++.++.+....+|..++..++.. +. . ...||+.|.+.+++
T Consensus 119 G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~-----l~----~------~~gwr~~f~~~~~~ 182 (455)
T TIGR00892 119 GLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQY-----LF----E------SFGWRGSFLILGGL 182 (455)
T ss_pred HhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHH-----HH----H------HhChHHHHHHHHHH
Confidence 33444445677788889885 789999999998888888777655542 10 1 12699999998887
Q ss_pred HHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 128 ~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
.+++.+..++..|+++.....+.+.++ .. ..+ .+ .++..+ +
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~------------~~~--------~~-------~~~~~~----------~ 223 (455)
T TIGR00892 183 LLHCCVCGALMRPVGPSQRVSKSKSKE--GL------------PPD--------GS-------TKKLSK----------K 223 (455)
T ss_pred HHHHHHHHHHhCCCCcccccccccccc--cC------------CCC--------Cc-------cccccc----------c
Confidence 655544433333433221110000000 00 000 00 000000 0
Q ss_pred CCCCCchhhHHHH--HHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 208 SFNDGPGAVLVNL--LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 208 ~~~~~~~~~~~~~--~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
......++. ++. .+- +.++.+++..++..++++....|.+.|..+ ++.+ + ....+.
T Consensus 224 ----~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s------------~--~~~g~~ 281 (455)
T TIGR00892 224 ----STAEKINRFLDFSL-FTH-RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVD------------E--YEAAFL 281 (455)
T ss_pred ----chhhhhhhhcchHH-hcC-chHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCC------------H--HHHHHH
Confidence 000001110 111 112 345666666777777777667777777543 2211 1 111234
Q ss_pred HHHHHHHHHHHhhhHHHhhhhc--CcchhhHHHH--HHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHH
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWI--GSRLVWAISN--FIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~--grr~l~~~g~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (453)
+.+.++...+...+.+++.||. ++|+...++. +..+++++...+. + ..+..++...
T Consensus 282 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~---------------~~~~~~i~~~ 341 (455)
T TIGR00892 282 LSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----G---------------DYTGLVIYCI 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----c---------------hHHHHHHHHH
Confidence 4456677777788889999873 3343333332 2222222221111 1 1333445666
Q ss_pred HhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 362 ~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
+.|++++......++++.|..|++ ..|..+|+.+....+++++.+.++|.+.+..|+. ...|.+.+++.++++++
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~-~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQ--RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY-KYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHH--HHhhHHhHHHHHHHHHHHccccceeeeehhcCCc-chHHHHhhHHHHHHHHH
Confidence 788888887777888999999875 6788899999999999999999999999887654 35788888877776654
No 69
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.32 E-value=2.4e-11 Score=124.03 Aligned_cols=271 Identities=13% Similarity=0.005 Sum_probs=176.5
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
.....+.......++..|. +++|+++.+......++|.++|..+++.. .+. .+||..|.+..+
T Consensus 104 ~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l--~~~-------------~g~~~~f~~~~~ 166 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL--IGM-------------FDEQNILAILTA 166 (382)
T ss_pred HHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH--HHH-------------cChhHHHHHHHH
Confidence 3444445556677776553 57889999999999999999988776541 110 258888877665
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
..++.+ + .+..+|++..+.+ ++ + +
T Consensus 167 ~~~~~~-~-~~~~~~~~~~~~~-~~--~-----------------------------------------------~---- 190 (382)
T TIGR00902 167 GLAFML-I-GFLIKPTIPPKDA-IP--E-----------------------------------------------D---- 190 (382)
T ss_pred HHHHHH-H-HHHcCCCCCCCcc-cc--c-----------------------------------------------c----
Confidence 533322 2 2233443211100 00 0 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+ .+....++++++ .|.++.+++..++.+.++..+..|.+.|+.| ++.+ +. ..| +..
T Consensus 191 ~---~~~~~~~~~~l~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~g~s-----------~~--~~g-~l~ 246 (382)
T TIGR00902 191 E---SQGDSAFIALLK-----NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--AGIS-----------AS--ATG-LLW 246 (382)
T ss_pred c---cccchhHHHHHc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCC-----------Hh--HHH-HHH
Confidence 0 001112333332 2456667777888888888888888888754 2222 11 122 233
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
.+..+...+...+.+++.||+|+|+++.++.+..++......+.. +.+..+....+.|++
T Consensus 247 ~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 247 GIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--------------------AFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--------------------hHHHHHHHHHHHHHH
Confidence 456666777788889999999999999999888887776555443 245566677888999
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhH-HHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n-~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
++........++.+. |++ .+++..|++| ....++..+.+...|.+.+..|. .+|++.+++++++.+.+
T Consensus 307 ~~~~~~~~~~~i~~~-~~~--~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~---~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGS--EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA---GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHhC-CHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHH
Confidence 998888777778876 665 4577788887 46778999999999999988863 37888888888776543
No 70
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.31 E-value=8.3e-12 Score=130.74 Aligned_cols=296 Identities=14% Similarity=0.075 Sum_probs=166.8
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+..++......+..+++.|..|+++|+++.++.+....+|..+|..++... . + ...||++|.+.
T Consensus 98 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~----~------~~~w~~~f~~~ 162 (485)
T TIGR00711 98 VIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI-----I----E------NYHWRWIFLIN 162 (485)
T ss_pred HHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHh-----c----c------CcCceehhhhh
Confidence 3445566667778999999999999999999999999999999998877541 1 1 13689999887
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCc----ccccccccCCCCCCCCCCCCCCcccCcccchhhh----
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDP----QRNAISKSKHDMPAAPNANGNKVESGHESDANLK---- 196 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 196 (453)
+++.+++..+..+..||++....+ +.+.....+... ....+.+.+.. .|. +......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~g~~l~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~ 227 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPAASE--NFDFLGLLLLSVGLGSLLYGLSEGPER---GWF----------DSNEILILSIT 227 (485)
T ss_pred hHHHHHHHHHHHHHcCCccccccC--CCcHHHHHHHHHHHHHHHHHHhhCCCC---CCC----------CchHHHHHHHH
Confidence 777666666556667774321111 100000000000 00000000000 000 0000000
Q ss_pred --------hccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCC
Q 012918 197 --------HISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGN 268 (453)
Q Consensus 197 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~ 268 (453)
...+.++ + ++... .++++ . +.++..++..++..++++...+|.+.|+.+ +++.++
T Consensus 228 ~~~~~~~~~~~~~~~---~----~~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~s~--- 290 (485)
T TIGR00711 228 GLVAIIAFVVWELTD---D----NPLVD-LRLFK----Y-RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQ-VLGYTA--- 290 (485)
T ss_pred HHHHHHHHHHHHHcC---C----CCccC-HHHHc----C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---
Confidence 0000000 0 01111 11222 1 234445666676777777777777777654 333221
Q ss_pred ChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCC
Q 012918 269 DHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGA 348 (453)
Q Consensus 269 ~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (453)
. ..| +.+...++...+.+.+.+++.||+|||+++.+|..+.++++..+.+.. . ++
T Consensus 291 ------~----~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~-~--~~----------- 345 (485)
T TIGR00711 291 ------L----QAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF-T--PD----------- 345 (485)
T ss_pred ------H----HHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC-C--CC-----------
Confidence 1 122 344556777888899999999999999998888777776665443211 0 10
Q ss_pred chhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee
Q 012918 349 NQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 349 ~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
. ..........+.|++.+.....-...+.+..|++ .+|...|+.|+...+++.+.+.+.+.+.+
T Consensus 346 ~--~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 346 T--PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH--KIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1222333455566666654433233455666754 67888999999999999998887776654
No 71
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.29 E-value=1.8e-11 Score=129.44 Aligned_cols=290 Identities=14% Similarity=0.050 Sum_probs=164.1
Q ss_pred hhcccccchhhHHHHhcC-CCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 48 DLANNTVQGPARALLADL-SGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 48 d~a~n~~~~p~rA~i~D~-~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
-++.........+.+.|. .|+++|++++++.....++|..+|..+++.. .+ ...||+.|++...
T Consensus 105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l--~~-------------~~gwr~~f~i~~~ 169 (495)
T PRK14995 105 AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL--LE-------------HFYWGSVFLINVP 169 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc-------------cCChHHHHHHHHH
Confidence 333333334455566565 5789999999999999999999999888651 11 1369999999877
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccc-----------cccccCCCCCCCCCCCCCCccc---Cc--c
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRN-----------AISKSKHDMPAAPNANGNKVES---GH--E 190 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~---~~--~ 190 (453)
..+++.++..+.+||+|....+ +. |-.... .++....+ .|+. ...... .. -
T Consensus 170 ~~~~~~~l~~~~l~~~~~~~~~--~~-------d~~g~~~~~~~~~~l~~~~~~~~~~---~~~~-~~~~~~~~~~~~~l 236 (495)
T PRK14995 170 IVLVVMGLTARYVPRQAGRRDQ--PL-------NLGHALMLIVAILLLVYSAKTALKG---FLSL-WVTSLTLLTGALLL 236 (495)
T ss_pred HHHHHHHHHHHhCCCCCCCCCC--CC-------ChHhHHHHHHHHHHHHHHHHhcccc---CCch-HHHHHHHHHHHHHH
Confidence 7667777777778876532111 00 000000 00000000 0000 000000 00 0
Q ss_pred cchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCCh
Q 012918 191 SDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDH 270 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~ 270 (453)
.....+| .+. ..+... .++++ .+.++..++..++..++++++.+|.+.|+.+ +++.++
T Consensus 237 ~~f~~~e---~~~-------~~p~~~-~~lf~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~-v~g~s~----- 294 (495)
T PRK14995 237 GLFIRTQ---LAA-------SRPMID-MRLFT-----HRIILSGVVMAMTAMITLVGFELLMAQELQF-VHGLSP----- 294 (495)
T ss_pred HHHHHHH---hcC-------CCCCcC-HHHhC-----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCH-----
Confidence 0000000 000 000001 11221 1233445566667777777777888887654 333321
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCch
Q 012918 271 EVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQ 350 (453)
Q Consensus 271 ~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (453)
.+ .| ..+..+++...+.+.+.+++.||+|+|++...|.++.++++.++.+.... + +
T Consensus 295 ----~~----ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~--~------------~- 350 (495)
T PRK14995 295 ----LE----AG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFS--T------------Q- 350 (495)
T ss_pred ----HH----HH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCC--C------------c-
Confidence 12 22 44556677888889999999999999998888877776666544333210 1 1
Q ss_pred hHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce
Q 012918 351 AIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (453)
Q Consensus 351 ~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~ 415 (453)
.+.......+.|++.+.........+.+..|++ ..|...|+.|++..+++.+...+.|.+.
T Consensus 351 --~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 351 --QWQAWGLMALLGFSAASALLASTSAIMAAAPPE--KAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred --hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH--hcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344566778888876665556667777765 5777799999999888887776666553
No 72
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.29 E-value=5.2e-11 Score=125.39 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+..+++...+.+++.+++.||+|||+.+..+.++.++..+...... ++ +.........+....
T Consensus 315 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~ 379 (496)
T PRK03893 315 NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG----GA-----------NVWVLGLLLFFQQML 379 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----cc-----------HHHHHHHHHHHHHHH
Confidence 445566777888899999999999999998877655444332221111 10 100111111111223
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHH-HHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLAS-LSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a-~~~liaa~~v~~ 442 (453)
|.+... +-.+++.|+.|++ .+|..+|+.+....+++.+.+.+.|.+.+..|.. ..+.+.+ ++.+++.+...+
T Consensus 380 ~~~~~~---~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 452 (496)
T PRK03893 380 GQGISG---LLPKLIGGYFDTE--QRAAGLGFTYNVGALGGALAPILGALIAQRLDLG--TALASLSFSLTFVVILLIGL 452 (496)
T ss_pred hcccch---hhHHHHHhhCCHH--HhhcccchhhhhhhHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHHHh
Confidence 333222 2235788999875 5778899999999999999999999998887743 2444433 444444444444
Q ss_pred eccC
Q 012918 443 KLPH 446 (453)
Q Consensus 443 ~vpe 446 (453)
..|+
T Consensus 453 ~~~~ 456 (496)
T PRK03893 453 DMPS 456 (496)
T ss_pred cCcH
Confidence 4553
No 73
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.29 E-value=5.1e-11 Score=126.44 Aligned_cols=279 Identities=18% Similarity=0.149 Sum_probs=175.6
Q ss_pred chhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q 012918 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (453)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~i 134 (453)
.....|+++|++|+||..+++++++...++..++|..+|++ +... ....+.|.+.++..++..+
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~-----Lva~----------~G~~~~f~inalsfl~~i~- 184 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI-----LVAF----------FGAAAAFLINALSFLISIL- 184 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH-----HHHH----------HHHHHHHHHHHHHHHHHHH-
Confidence 34468999999999999999999999999999999988876 2211 1235677777776654433
Q ss_pred eeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCch
Q 012918 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (453)
Q Consensus 135 t~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (453)
.+...|.++. .++.+ + | ...
T Consensus 185 ~l~~~~~~~~--~~~~~--------------------------------------------------~----e----~~~ 204 (524)
T PF05977_consen 185 ALLRWKPPPP--PSSLP--------------------------------------------------R----E----RFF 204 (524)
T ss_pred HHHHcccccc--ccccc--------------------------------------------------h----h----hhh
Confidence 3333332210 00000 0 0 012
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHH
Q 012918 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~ 294 (453)
..+++-++-.++-| .++.+.+..+...+...++..-.+.++.+ .+++++ ..-| +.+..+++-++
T Consensus 205 ~~l~~G~ryv~~~~-~l~~~l~~~~~~~l~~~a~~aLlPl~a~~-~l~~~a---------~~yG-----ll~a~~gvGai 268 (524)
T PF05977_consen 205 SALREGLRYVRSSP-PLRSVLLRSFLFNLFASAVWALLPLFARD-VLGGGA---------SGYG-----LLLAAFGVGAI 268 (524)
T ss_pred hhHHHHHHHHhcch-HHHHHHHHHHHHHHhhhHHHHhhhHHHHH-HhCCcH---------HHHH-----HHHHHHHHHHH
Confidence 23344444433333 44444332222211111222223333322 344432 1112 23345667888
Q ss_pred HHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcccc
Q 012918 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (453)
Q Consensus 295 i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP 374 (453)
+.+++.+++.+|++++++...+.++++++++.+++.. ..+..++.+.+.|++|......=
T Consensus 269 ~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--------------------~~~~~~~~l~l~G~~~~~~~~~~ 328 (524)
T PF05977_consen 269 LGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--------------------SFWLALIALFLAGAAWIIANSSL 328 (524)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998888888888776666554 14445556677899998877654
Q ss_pred chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh-eeccCCCC
Q 012918 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT-LKLPHLSS 449 (453)
Q Consensus 375 ~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~-~~vpet~g 449 (453)
.+++-+..|++ -+|+.++++++....++-+.++..|.+.+..|.. .++.++|+..+++.+... ..+|+.+.
T Consensus 329 ~t~~Q~~~P~~--~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~--~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 329 NTLVQLSVPDW--VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR--TALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHhCCHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 55666777876 5677799999999999999999999999888754 367777776666665544 34666554
No 74
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.29 E-value=4.6e-11 Score=121.89 Aligned_cols=274 Identities=13% Similarity=0.043 Sum_probs=164.4
Q ss_pred hhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHH
Q 012918 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (453)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~ 127 (453)
.++.+..+....+++.|. +++|+++.+..+.+..+|..+|..+++.. .+. -.||..|.+.++.
T Consensus 105 g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l--~~~-------------~g~~~~f~~~~~~ 167 (382)
T PRK11128 105 NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL--VSW-------------FGEQAILWILTAG 167 (382)
T ss_pred HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH--HHH-------------cChhHHHHHHHHH
Confidence 334455566677888876 56788889999999999999988888651 110 2588888877765
Q ss_pred HHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 128 ~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
.++..+. .+..||++... +++ + + +
T Consensus 168 ~~~~~~~-~~~~~~~~~~~---~~~-~-----------------------------------------------~----~ 191 (382)
T PRK11128 168 VASMLLG-QLLRPTIMPQG---ESR-Q-----------------------------------------------Q----E 191 (382)
T ss_pred HHHHHHH-HHccCCCCCcc---ccc-c-----------------------------------------------c----c
Confidence 5444332 33345432100 000 0 0 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
.+...++++++++ |.++.+++..++.+.+...+..|.+.|..| .+.+ +. ..| ....
T Consensus 192 ---~~~~~~~~~i~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~s------------~~-~~g-~~~~ 247 (382)
T PRK11128 192 ---SAGWPAWKALLKE-----PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--AGYS------------AS-TIG-YLWS 247 (382)
T ss_pred ---ccccchHHHHHcC-----hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--CCCC------------Hh-HHH-HHHH
Confidence 0011234444432 455555666666566655566666666543 2222 10 122 1222
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
+..+..++..++.+++.||+|+|+.+..+.+..+++++...+.. + .+..++...+.|+++
T Consensus 248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~ 307 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT----A----------------LPWLIVIQILHCGTF 307 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh----h----------------HHHHHHHHHHHHHHH
Confidence 44556677778899999999999998888877777665444332 1 344455666678877
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhH-HHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n-~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
+.....-...+.+. +++ ++|+..++.+ ....+++.+.+...|.+.+..|. ..++..+++++++.+...+.+
T Consensus 308 ~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~---~~~~~~~~~~~~~~~~~~~~~ 379 (382)
T PRK11128 308 TVCHLAAMRYIAAR-PGS--EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA---GVFWVMALVALPALFIRPKVV 379 (382)
T ss_pred HHHHHHHHHHHHHC-CHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhc
Confidence 76544322333443 332 3577788876 55667778889999999988874 267778888887766555443
No 75
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.28 E-value=6.3e-11 Score=121.33 Aligned_cols=132 Identities=11% Similarity=0.100 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
.+.++...+.....+++.||+|+|+++.++.+++++.+.+..... + .+.+++...+.|++
T Consensus 261 ~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~----~----------------~~~~~~~~~l~g~~ 320 (396)
T TIGR00882 261 TMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT----T----------------ALEVVILKMLHAFE 320 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC----C----------------hHHHHHHHHHHHHH
Confidence 345566677778889999999999999888777776554433221 1 23334445556666
Q ss_pred hhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.......-...+.+..|+ |..++..+. .|....+++.+.+.+.|.+.+..|. ...|.+.+++.+++++...+
T Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~--~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 321 VPFLLVGCFKYITSQFDV--RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF--QGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHHHHHHhCCc--ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 655444333344444443 466776766 6888999999999999999998874 35788888888887766544
No 76
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.27 E-value=9.1e-11 Score=119.90 Aligned_cols=177 Identities=11% Similarity=-0.024 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHH-HHHHHhhhHHHhhhhcCc
Q 012918 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSV-VLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 231 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~-~~~i~s~~~~~l~d~~gr 309 (453)
++..+...++...+...+..|.+.|+.|. +-+ ++ ..| +.....++ ...+..++.+++.||+|+
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--G~s-----------~~--~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~ 273 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVDA--GWP-----------LE--WIG-RLGMAGGAVTVLLGCGGGAWLVRRAGL 273 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhc--CCC-----------HH--HHH-HHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555555555555555666665442 111 11 122 22223333 344557789999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|+....+.+..++............ . . + .....+....+.++..+.....-++.+.++.+++ |..
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~~~~-~-----~------~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~ 338 (390)
T TIGR02718 274 WRTFILGVGLAGSLALLWFAQAAFW-L-----A------P--GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG-DQA 338 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-c-----C------C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cch
Confidence 9998877655533222111111000 0 0 0 1112222233333444444333344555666542 478
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
|+++++.|....++..+.+...|.+.+..|.. ..|.+.+++++++.+..
T Consensus 339 g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~--~~f~~~~~~~l~a~~~~ 387 (390)
T TIGR02718 339 GTDVTAVQSTRDLGELIASSIAGYLTDRFGYA--GGFLSGTVLAVLAILLA 387 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998887743 47888888888877654
No 77
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.27 E-value=1.6e-11 Score=130.60 Aligned_cols=321 Identities=14% Similarity=0.122 Sum_probs=180.7
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+.-++........-.+++|..++++|+.+..+ ......|+..+...++. + ..+||+.+++..
T Consensus 180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~-----~------------~~~Wr~~~~~~~ 241 (521)
T KOG0255|consen 180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAY-----I------------TRDWRWLFWIIS 241 (521)
T ss_pred HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHH-----H------------HhhHHHHHHHHH
Confidence 45677788888899999999999999999999 66666666665555443 1 137999999999
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++..+.++. .+..||+|+|+..+++.+++.+.+++. .+.+... ..+.+...++. ..+..
T Consensus 242 ~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~-----a~~n~~~-------------~~~~~~~~~~~-~~~~~- 300 (521)
T KOG0255|consen 242 IPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKI-----AKLNGRK-------------LSVKELLRLEL-LLRPL- 300 (521)
T ss_pred HHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHH-----HhhcCCC-------------CCcHHHHHHHH-HhhHh-
Confidence 997666554 566669999998877655444332221 0000000 00000000000 00000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+..+.+++..+..+++ .|+ ++...+...+.|+.+ .+.+|...+..+ .++++ .. ..
T Consensus 301 -~~~~~~~~~~~~~l~~----~~~-l~~~~~~~~~~~~~~-~~~y~gl~~~~~-~lg~~----------------~~-~~ 355 (521)
T KOG0255|consen 301 -KLLFTEPKISFLDLFR----TPR-LRYRTLYLLFIWFVF-SLVYYGLSLNVS-GLGGN----------------IY-LN 355 (521)
T ss_pred -hhhccCCCCchhhhhc----CHH-HHHHHHHHHHHHHHH-hHHHHhhhhhhh-hcCch----------------HH-HH
Confidence 0000012233444443 333 454445555556332 233333333221 11221 11 11
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...++.+....-+..+.+.|++|||..+..+..+..++++..++.... . .. ....++..++..++
T Consensus 356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~-~~~~~~~~~~~~~~ 420 (521)
T KOG0255|consen 356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD--L------------GG-WLHWILPLLGKFFI 420 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc--c------------hh-HHHHHHHHHHHHHH
Confidence 111222333344455788899999999999999998888777766521 0 00 01222233333333
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+.+.... |...+|++|...|..| .|..+....+..++++.+...... ... ...+..++..+.++++.+..++|
T Consensus 421 ~~~~~~~--~~~~~el~pt~~r~~~--~~~~~~~~~~~~i~ap~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~lp 493 (521)
T KOG0255|consen 421 GSAFNLI--FLYSAELIPTVVRNTA--VGAISAAARLGSILAPLFPLLLRQ-MFP--LLGLILFGWLALLLGLLSLLLLP 493 (521)
T ss_pred HHHHHHH--HHHHHhhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh-hcc--cchHHHHHHHHHHHHHHHHhcCc
Confidence 3333222 5688999998754454 888888888888888876543322 211 12333367777777777779999
Q ss_pred CCCCCCC
Q 012918 446 HLSSNSF 452 (453)
Q Consensus 446 et~g~~~ 452 (453)
||+++..
T Consensus 494 et~~~~l 500 (521)
T KOG0255|consen 494 ETKGKPL 500 (521)
T ss_pred ccCCCCC
Confidence 9999864
No 78
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.26 E-value=7.7e-11 Score=124.13 Aligned_cols=284 Identities=11% Similarity=0.065 Sum_probs=143.7
Q ss_pred hhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhhe
Q 012918 56 GPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVT 135 (453)
Q Consensus 56 ~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it 135 (453)
.+...++.|..|+++|++++++......+|..++..+... ..... .+........||+.|.+.+++.+++.++.
T Consensus 142 ~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~-----i~~~~-~~~~~~~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 142 VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL-----VFPLI-KDAGAPSFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-HhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999987777777766544322 00000 00000001269999999877765555444
Q ss_pred eeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchh
Q 012918 136 IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGA 215 (453)
Q Consensus 136 ~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (453)
.+..+++|....+ + . .++ . + .++.
T Consensus 216 ~~~~~~~p~~~~~--~---~---------------------------------------~~~----~----~----~~~~ 239 (476)
T PLN00028 216 LTLGQDLPDGNYR--E---L---------------------------------------KKS----G----T----MPKD 239 (476)
T ss_pred HHHcCcCCCCchh--h---H---------------------------------------Hhc----C----c----cccc
Confidence 4444443321100 0 0 000 0 0 0000
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHH
Q 012918 216 VLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGV 295 (453)
Q Consensus 216 ~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i 295 (453)
+..+.++...+.|+ .+.+++..+.++.....+..+.+.|+.+ .++-+ .. ..+ ....++++...+
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s------------~~-~a~-~~~~~~~~~~~i 303 (476)
T PLN00028 240 SFSKVLRYGVTNYR-TWILALTYGYSFGVELTMDNIIAEYFYD-RFGLS------------LE-TAG-AIAASFGLMNLF 303 (476)
T ss_pred cHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHhHHHHHHHH-hcCCC------------HH-HHH-HHHHHHHHHHHH
Confidence 11112222222233 3444444444444433444455555432 12211 11 122 344456677888
Q ss_pred HhhhHHHhhhhcCcch-----hhH--HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchh
Q 012918 296 SSFLIEPMCRWIGSRL-----VWA--ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (453)
Q Consensus 296 ~s~~~~~l~d~~grr~-----l~~--~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (453)
..++.++++||++||+ .++ +..++.++++...... + + ....++.+.++++..+
T Consensus 304 g~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-----~------------~---~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 304 ARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA-----N------------S---LGAAIVVMILFSIFVQ 363 (476)
T ss_pred HHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc-----c------------h---HHHHHHHHHHHHHHHH
Confidence 8999999999998752 222 2222221111111111 1 0 1122223333444433
Q ss_pred hhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 369 ~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
.....-++++.++.|+ ..|+..|+.+....++.++.+...+ .+..+++ ...|.+.+++.++++++.++.
T Consensus 364 ~~~~~~~~~~~~~~~~---~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y-~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 364 AACGATFGIVPFVSRR---SLGVISGLTGAGGNVGAVLTQLLFF--TGSSYST-ETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HhhhhhcccCcccChh---hchhhhhhhhccccHHHHHHHHHHH--hcCCccH-hhHHHHHHHHHHHHHHHHHhe
Confidence 3334444566676553 5788899988877777777766543 1122223 357888888888888776554
No 79
>PRK03699 putative transporter; Provisional
Probab=99.26 E-value=9.9e-11 Score=119.94 Aligned_cols=270 Identities=13% Similarity=0.071 Sum_probs=157.1
Q ss_pred hhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHH
Q 012918 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (453)
Q Consensus 48 d~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~ 127 (453)
.++.........+++.|..|+++|+++.+......++|+.++..+... .. .. ...||+.|.+.+++
T Consensus 106 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----l~----~~-----~~gw~~~f~~~~~~ 171 (394)
T PRK03699 106 GVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAY-----LL----AR-----SIEWYWVYACIGLV 171 (394)
T ss_pred HHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-----HH----hc-----cccHHHHHHHHHHH
Confidence 333344455678899999999999999988877778877766554432 00 00 13699999887766
Q ss_pred HHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 128 ~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
.++..++.. .++.|..+.++++ + .+ +
T Consensus 172 ~~~~~~~~~--~~~~p~~~~~~~~-----~--------------------------------------------~~---~ 197 (394)
T PRK03699 172 YVAIFILTL--FSEFPALGKHAPK-----A--------------------------------------------DK---P 197 (394)
T ss_pred HHHHHHHHH--hcCCccccccCcc-----c--------------------------------------------cC---c
Confidence 544433222 2333321110000 0 00 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
.. ++ ...+.++.+++..++...+...+..|.+.|+.| .++.++ .+ .| +...
T Consensus 198 ----~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~---------~~----~~-~~~~ 248 (394)
T PRK03699 198 ----VA----KE------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQK-KFGMSL---------ED----AG-NLVS 248 (394)
T ss_pred ----cc----cc------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCh---------HH----hh-HHHH
Confidence 00 00 012334445555555555656677778887654 233331 11 11 2334
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
.+.+...+..++.+++.||+++|+.+..+..+.++.+....... + .....+.....|+..
T Consensus 249 ~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~G~~~ 308 (394)
T PRK03699 249 NFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD----D----------------PSHLLYAILGLGFFS 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC----C----------------chHHHHHHHHHHHHH
Confidence 55566788889999999999999988876555444333222111 1 112223344566666
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
+.......+...|..|++ .+...|..+.+..+++.+.+...|.+.+..|.. ..|++.+++.+++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~--~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 309 SAIYTTIITLGSQQTKVA---SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ--AALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHHHccCC---CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch--hhhhhhHHHHHHHHHH
Confidence 655555455666766643 345578888888999999999999998887744 4677777766666543
No 80
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.23 E-value=7.6e-11 Score=118.60 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=136.4
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH-HHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF-LVAV 125 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f-~i~~ 125 (453)
..++ +....+..++++|..|+++|+++.++...+..+|..++..++... ...+..+.......+||+.| .+.+
T Consensus 101 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l-----~~~~~~~~~~~~~~~w~~~~~~~~~ 174 (366)
T TIGR00886 101 IGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI-----IGSLIFGAGLPAHLAWGWAFVIVPA 174 (366)
T ss_pred HHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHhcccccccccccchhHHHHH
Confidence 3444 445667889999999999999999999988888888877666431 00000000000012689888 4333
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
+...+..++..+..+|+|..+.++++.+ . + + +.+ +.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------~--~----------------------~~~---~~~--- 211 (366)
T TIGR00886 175 GILLLPALLIFFVGADTPPGKPATGKLS----F---------K--G----------------------ARW---SVG--- 211 (366)
T ss_pred HHHHHHHHHHHHhcccCCcccccchhcc----c---------c--c----------------------ccc---ccc---
Confidence 3333444445566777664221110000 0 0 0 000 000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
.+.....++.+++ | .++.+++..+..+.....+..+.+.|+.+ .++-++ + ..| +.
T Consensus 212 -----~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-----------~--~~~-~~ 266 (366)
T TIGR00886 212 -----TGALGDQLKVFRD----R-HTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSK-----------V--TAG-AY 266 (366)
T ss_pred -----chhHHHHHHHHhc----c-chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcH-----------H--HHH-HH
Confidence 0011122223322 2 24445556666666666666677776644 233221 1 122 33
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
..++.+...+..++.+++.||+|+|+.+..+....+.+.....+... .+. . .+......++.....|+
T Consensus 267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~-----~~~~~~~~~~~~~~~g~ 334 (366)
T TIGR00886 267 ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV---SPL----S-----LAVFIVLFVALFFFSGA 334 (366)
T ss_pred HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---Ccc----h-----HHHHHHHHHHHHHHhcc
Confidence 34556677778889999999999998888776655554443333210 000 0 00011222222333444
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHH
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAI 400 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~ 400 (453)
+.+ .-+++++++.|. ..|+.+|+.+...
T Consensus 335 ~~~----~~~~~~~~~~~~---~~g~~~g~~~~~~ 362 (366)
T TIGR00886 335 GNG----STFALVPHIFRR---ATGAVSGLVGAIG 362 (366)
T ss_pred ccc----hhhhcchhhchh---hcccHHHHHHHhc
Confidence 444 445578888873 6788888877654
No 81
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.22 E-value=1.4e-10 Score=120.18 Aligned_cols=149 Identities=7% Similarity=-0.087 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
..+.+..+...+..++.+++.||+|+|+++..+.+..++++....... + ++...+..++...+.
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~----~------------~~~~~~~l~l~~~l~ 318 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD----P------------EYFGYALLFLSMIVY 318 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----c------------chhhHHHHHHHHHHH
Confidence 455566667777788999999999999999998887776654433321 0 011123344556678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhH-HHHHHHHHHHhhccccceecccc----cchhhHhHHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGG----GNIPAFVLASLSALAGGV 438 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n-~~~~l~q~i~s~~~g~l~~~~g~----~~~~~f~~~a~~~liaa~ 438 (453)
|++++........+++|..|++ .+|+.+|+.+ ....++.++.+...|.+.+..|+ +...+|.+.+++++++++
T Consensus 319 g~~~~~~~~~~~~~i~~~~p~~--~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~ 396 (418)
T TIGR00889 319 GCAFDFFNISGSVFVEKEVPVH--IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAV 396 (418)
T ss_pred HHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHH
Confidence 8888776666567889999975 6788899997 56778999999999999887663 123578889999899888
Q ss_pred HhheeccCCCCC
Q 012918 439 VATLKLPHLSSN 450 (453)
Q Consensus 439 ~v~~~vpet~g~ 450 (453)
...+++||+++.
T Consensus 397 l~~~~~~~~~~~ 408 (418)
T TIGR00889 397 LFMIFFKYSHNA 408 (418)
T ss_pred HHHHHhCCcccC
Confidence 888889998763
No 82
>PRK11043 putative transporter; Provisional
Probab=99.22 E-value=3.2e-10 Score=116.18 Aligned_cols=248 Identities=14% Similarity=0.066 Sum_probs=139.5
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHh
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~ 132 (453)
.......+++.|..|++++++..+......++|..++..++... . + ..+||+.|.+..+..++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l-----~----~------~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 110 SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL-----L----N------HFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----h------cCChHHHHHHHHHHHHHHH
Confidence 33445678899999999999999888888888888887776541 0 0 1268998888777665554
Q ss_pred hheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCC
Q 012918 133 LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDG 212 (453)
Q Consensus 133 ~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (453)
++. +..+|++... +++ +
T Consensus 175 ~~~-~~~~~~~~~~--~~~------------------------------------------------------------~ 191 (401)
T PRK11043 175 LPT-LRLKPSKKAR--KQS------------------------------------------------------------Q 191 (401)
T ss_pred HHH-HHcCCCCCcc--ccc------------------------------------------------------------h
Confidence 433 3345433110 000 0
Q ss_pred chhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHH
Q 012918 213 PGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVV 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~ 292 (453)
.+..+++++++ |+ ++...+.....-.+++.+..+.+.++.+ ++.+ .. ..| +....+.+.
T Consensus 192 ~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s------------~~-~~g-~~~~~~~~~ 250 (401)
T PRK11043 192 DALTFKQLLKS----KT-YLGNVLIFAACSAAFFAWLTGSPFILEQ--MGYS------------PA-DIG-LSYVPQTIA 250 (401)
T ss_pred HHHHHHHHHcC----hh-HHHHHHHHHHHHHHHHHHHHHhHHHHHH--cCCC------------HH-HHH-HHHHHHHHH
Confidence 11123333322 22 2222222222222333334444444332 2222 10 122 234455666
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
..+.+++.+++.||+|+|+....+....+++............+ .....++...+.|++.+....
T Consensus 251 ~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 315 (401)
T PRK11043 251 FLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP---------------SLVPLLIPFCVMAAANGAIYP 315 (401)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------cHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999987766655555544433322211001 122333445567777777666
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceec
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~ 417 (453)
+-.+...|..|+ .+|..+|+.|......-.+.+...|.+.+.
T Consensus 316 ~~~~~~~~~~~~---~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 316 IVVAQALRPFPQ---ATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHhhhCcc---cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 655555566654 478889999988777777888777777653
No 83
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.2e-11 Score=125.10 Aligned_cols=345 Identities=13% Similarity=0.055 Sum_probs=194.8
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccc--cccccccccchhhhcccchhhHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGS--WHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~--~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
+|.+++..=..-+-+..+|.+....||.--++.=.|.++|.+.|..+..+.. ..+-++-- +.....-.-||..|++
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~--~~~~~ld~vWRl~~gl 230 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP--STYPHLDGVWRIIFGL 230 (538)
T ss_pred HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCC--CCchHHHHHHHHHHHH
Confidence 7888888878778888899999999998888877788888777776654310 11111100 0001122579999999
Q ss_pred HHHHHHHHhhheeeEeecccCCCCCCCC-CCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccc
Q 012918 124 AVVFLTLCALVTIYFADEVPLTVNQPNH-LTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKA 202 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E~p~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (453)
+++|.+ .++.--..+||+++...-..+ .+.|.+- .-+++..+ .++++ ..+.
T Consensus 231 g~vpa~-~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d-------~~k~~~~~---------------~~~~~-~~~~---- 282 (538)
T KOG0252|consen 231 GAVPAL-LVLYFRLKMPETARYTALVSKKLKQAAGD-------MKKVLSVD---------------IEAES-TAES---- 282 (538)
T ss_pred HHHHHH-HHHHhhhcCCcchhHHHHhhcCHhhhhhc-------cccccccc---------------cchhh-cccc----
Confidence 999975 455668889999876521111 1111100 00000000 00000 0000
Q ss_pred cccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHH
Q 012918 203 EDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREG 282 (453)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g 282 (453)
. ....++....+...+..+ --+.+...|..-|+-=+++++..+|..+.+....+. |.+++. +..| +.+
T Consensus 283 --~-~~~~~~~~~~F~~~f~~~--hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~--~~~~~~-~~~~----~vA 350 (538)
T KOG0252|consen 283 --D-VPPPSNSFGLFSRLFLRW--HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVI--PSANTY-HELF----KVA 350 (538)
T ss_pred --C-CCCcccccchHHHHHHHH--HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccC--CCcchH-HHHH----HHH
Confidence 0 000000111233333332 123344455555554556666677776654432222 222211 2233 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
-+.+++.....+-...+...++|++|||++-+.|.+++++.++.++..+ |... . ..+....+.+..+++-
T Consensus 351 ~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y----~~~~---~---~~Gf~v~y~l~~ff~N 420 (538)
T KOG0252|consen 351 EGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY----NQLE---N---TIGFVVLYSLTFFFGN 420 (538)
T ss_pred HHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc----cccc---c---cCceeehHHHHHHHHh
Confidence 2233322222222344556789999999999999999988777666555 2100 0 0122223333333333
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee-----cccccchhhHhHHHHHHHHHH
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA-----LFGGGNIPAFVLASLSALAGG 437 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~-----~~g~~~~~~f~~~a~~~liaa 437 (453)
+| =..+.-+ +-+|.+|.+ -+|+..|+--.+--.+-++....++++.+ ..|.. .+|++.+++++++.
T Consensus 421 FG--Pn~ttfi---vpaE~FPar--vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~--~v~~i~~~~~~~gi 491 (538)
T KOG0252|consen 421 FG--PNATTFI---VPAEIFPAR--VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVR--NVFIILAGCMLLGI 491 (538)
T ss_pred cC--CCceeEE---eehhhchHH--HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccch--HHHHHHHHHHHHhH
Confidence 33 2223333 669999974 67888888778888888999999988887 66644 48999999999888
Q ss_pred HHhheeccCCCCCCC
Q 012918 438 VVATLKLPHLSSNSF 452 (453)
Q Consensus 438 ~~v~~~vpet~g~~~ 452 (453)
+ ..+++|||||||.
T Consensus 492 ~-~T~l~pEtk~~~l 505 (538)
T KOG0252|consen 492 L-FTLLIPETKGKSL 505 (538)
T ss_pred h-eeEEeecccccCH
Confidence 7 4688999999985
No 84
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.14 E-value=1e-09 Score=109.18 Aligned_cols=280 Identities=14% Similarity=0.100 Sum_probs=162.6
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhh------hc
Q 012918 39 VFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRAC------CA 112 (453)
Q Consensus 39 ~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~------~~ 112 (453)
..++++.++-.+.-..|....+|++|..|+|++.+..++.+.+.++|.++|.+++... ......+.. ..
T Consensus 12 ~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~-----i~~~~~~~~~~~~~~~~ 86 (310)
T TIGR01272 12 LFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSL-----ILSGAGDLSMQVATANA 86 (310)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHH-----HhcCCcchhhhhhhhhH
Confidence 4567888899999999999999999999999999999999999999999999888641 100000000 00
Q ss_pred ccchhhHHHHH-HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCccc
Q 012918 113 ACGNLKAAFLV-AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHES 191 (453)
Q Consensus 113 ~~~~~r~~f~i-~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (453)
...+||+.|.+ +++..++.+++.....||.+. +.++ +.
T Consensus 87 ~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~---~~~~-----~~--------------------------------- 125 (310)
T TIGR01272 87 EAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE---ADVA-----RV--------------------------------- 125 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc---cccc-----cc---------------------------------
Confidence 01368888884 444443333333333344211 0000 00
Q ss_pred chhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceee-eecCCCCCCCh
Q 012918 192 DANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGRE-VYHGDPKGNDH 270 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~-if~g~p~~~~~ 270 (453)
. ++ + . ...+..++ .|+ ++...+.+|+---+-.++..+.+.|+.+. .++-+
T Consensus 126 ---~------~~---~-----~-~~~~~~~~----~~~-~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s------ 176 (310)
T TIGR01272 126 ---S------SG---D-----T-TQKTSAFQ----FTH-LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLP------ 176 (310)
T ss_pred ---c------cc---c-----c-cchhhHHh----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------
Confidence 0 00 0 0 00011222 122 22223344433324445556666666432 12222
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCch
Q 012918 271 EVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQ 350 (453)
Q Consensus 271 ~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (453)
+ ..+......+.....+..++.+++.||+|+||+..++..+..++++...... +
T Consensus 177 ------~--~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~-----------------~- 230 (310)
T TIGR01272 177 ------E--DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH-----------------G- 230 (310)
T ss_pred ------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-----------------C-
Confidence 1 2233455667777888899999999999999987776655554432221111 1
Q ss_pred hHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhH
Q 012918 351 AIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVL 428 (453)
Q Consensus 351 ~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~ 428 (453)
.. ....+.++|++.+.....-+++..+.+|++ .|...+++ ....++..+.+.+.|.+.+..|.. ..|++
T Consensus 231 --~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~---~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~--~a~~v 299 (310)
T TIGR01272 231 --YV-AMWFVLALGLFNSIMFPTIFSLALNALGRH---TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQ--LAFAL 299 (310)
T ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhHHHH-HHHHhcchHHHHHHHHHHHhccch--HHHHH
Confidence 11 122344677777777777677777888764 34445665 445577888898899888877743 34553
No 85
>PRK10133 L-fucose transporter; Provisional
Probab=99.13 E-value=9.5e-10 Score=114.67 Aligned_cols=293 Identities=14% Similarity=0.084 Sum_probs=159.2
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc--cc-cc----cccccc-ch--hhh-cc
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG--SW-HR----WFPFLT-SR--ACC-AA 113 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~--~~-~~----~~~~~~-~~--~~~-~~ 113 (453)
.+.-++....+....+++.|..|+++|++..+..+....+|..+|.+++... .+ +. .+..+. ++ .++ ..
T Consensus 125 ~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~ 204 (438)
T PRK10133 125 FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSL 204 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHH
Confidence 3445667778888899999987777777678888888899999998876421 00 00 000000 00 000 00
Q ss_pred cchhhHHHHH-HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccc
Q 012918 114 CGNLKAAFLV-AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESD 192 (453)
Q Consensus 114 ~~~~r~~f~i-~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (453)
..+||+.|.. ..+..++..++.....||.|. ++.+ + +
T Consensus 205 ~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~---~~~~--~------~------------------------------- 242 (438)
T PRK10133 205 VLSVQTPYMIIVAIVLLVALLIMLTKFPALQS---DNHS--D------A------------------------------- 242 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc---cccc--c------c-------------------------------
Confidence 1257777754 333333333332333444211 0000 0 0
Q ss_pred hhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhh
Q 012918 193 ANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEV 272 (453)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~ 272 (453)
+ + .......++++++ |+ ++...+..++...+......|.+.|+-+..++-+
T Consensus 243 ---------~----~---~~~~~~~~~ll~~----~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s-------- 293 (438)
T PRK10133 243 ---------K----Q---GSFSASLSRLARI----RH-WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-------- 293 (438)
T ss_pred ---------c----c---cchhhhHHHHHhC----ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--------
Confidence 0 0 0001122333332 32 2333333444444444444555555322233322
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhH
Q 012918 273 KFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAI 352 (453)
Q Consensus 273 ~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (453)
. ....+.+..+.+...+.+++.+++.||+|+|++...+.++.++.++...+.. +
T Consensus 294 ----~--~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~--- 347 (438)
T PRK10133 294 ----A--GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------G--- 347 (438)
T ss_pred ----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-----------------C---
Confidence 1 2233566777888889999999999999999998887666554443322211 1
Q ss_pred HHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHH
Q 012918 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLS 432 (453)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~ 432 (453)
. ..+..+.++|++.+.....-+++..|..|++ .|...++.++.. +...+.+.+.|.+.+..|+ -...|++-.++
T Consensus 348 ~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~---~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~-~~~~~~v~~~~ 421 (438)
T PRK10133 348 H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGN-IPTAELIPALC 421 (438)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh---hccchhHHhHHh-ccchHHHHHHHHHHHhccc-hHHHHHHHHHH
Confidence 1 1234556688888888887777788877653 566688876543 5667777777777776662 12356655555
Q ss_pred HHHHHHHh
Q 012918 433 ALAGGVVA 440 (453)
Q Consensus 433 ~liaa~~v 440 (453)
.+...++.
T Consensus 422 ~~~~~~~~ 429 (438)
T PRK10133 422 FAVIFIFA 429 (438)
T ss_pred HHHHHHHH
Confidence 55444443
No 86
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.12 E-value=5.8e-10 Score=112.29 Aligned_cols=247 Identities=11% Similarity=0.062 Sum_probs=144.6
Q ss_pred chhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q 012918 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (453)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~i 134 (453)
.....+++.|..| ++|+++.++.+...++|..++..++... .. ..+.+||..|.+.+++.+++..
T Consensus 105 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l-----~~--------~~~~~w~~~f~~~~~~~~~~~~- 169 (355)
T TIGR00896 105 NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL-----AQ--------HSGGHWQQALAWWALPALLALL- 169 (355)
T ss_pred hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH-----HH--------hhhhhHHHHHHHHHHHHHHHHH-
Confidence 4445667788775 6899999999999999988887665431 00 0113589888776554333322
Q ss_pred eeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCch
Q 012918 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (453)
Q Consensus 135 t~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (453)
..+||.+..+.++.+ . ..
T Consensus 170 --~~~~~~~~~~~~~~~--------------------------------------------------~----------~~ 187 (355)
T TIGR00896 170 --AWIPQVRRRVAANQT--------------------------------------------------T----------TR 187 (355)
T ss_pred --HHhhhhccccCCCCC--------------------------------------------------C----------CC
Confidence 234544211100000 0 00
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHH
Q 012918 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~ 294 (453)
...++.+++ +.++.+++..++.+.+++.+..|.+.|+.+ ++.+ . .........+.+..+
T Consensus 188 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~------------~--~~~g~~~~~~~~~~i 246 (355)
T TIGR00896 188 LTPVRIWRS-----PLAWQVTVFFGLQSGLYYSLIGWLPAILIS--HGAS------------A--ATAGSLLALMQLAQA 246 (355)
T ss_pred CCCchhhcC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC------------H--HHHHHHHHHHHHHHH
Confidence 001112211 234444555555556666666677777643 2222 1 112244455677888
Q ss_pred HHhhhHHHhhhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 295 VSSFLIEPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 295 i~s~~~~~l~d~~-grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
+..++.+++.||+ +||+....+.++++++++...+... + ... ..+.+.|++.+.....
T Consensus 247 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~---~~~~l~g~~~g~~~~~ 305 (355)
T TIGR00896 247 ASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM---H---------------GLW---AWALVLGLGQGGAFPL 305 (355)
T ss_pred HHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh---h---------------HHH---HHHHHHHHhhhhHhHH
Confidence 8899999999999 4566666666666665544443321 0 111 1345567777776655
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG 421 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~ 421 (453)
-.+.+.+..+++ +..|..+|+.+....+...+.+..+|.+.+..|++
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 306 ALTLIGLRSRQA-AQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HHHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555544443 45688899999888999999999999998887754
No 87
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.12 E-value=4.2e-10 Score=113.38 Aligned_cols=301 Identities=13% Similarity=0.058 Sum_probs=195.8
Q ss_pred HHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccc--c-----cccccccccccchhhhcccc
Q 012918 43 GFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGA--S-----GSWHRWFPFLTSRACCAACG 115 (453)
Q Consensus 43 g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~--~-----~~~~~~~~~~~~~~~~~~~~ 115 (453)
-+.+.+.+.+..+.+-.|++.|..++++-++.++..=-+.-+|+.+...... + .-+...+ +.+. ...+.
T Consensus 121 ~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l-~~l~---~~~~~ 196 (438)
T COG2270 121 FLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL-LGLP---PADGE 196 (438)
T ss_pred HHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEe-eccC---ccccc
Confidence 3446788899999999999999999988887766554455555544333320 0 0011110 0000 11235
Q ss_pred hhhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhh
Q 012918 116 NLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANL 195 (453)
Q Consensus 116 ~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (453)
..|..+.++++-.++..+..+..+|+.+....+..
T Consensus 197 ~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~--------------------------------------------- 231 (438)
T COG2270 197 DVRITGLLAALWWLLFALPMILNVHDAEKISSPPP--------------------------------------------- 231 (438)
T ss_pred cchhHHHHHHHHHHHHHhHHHhcccccccccccch---------------------------------------------
Confidence 77888888888877777777777777654210000
Q ss_pred hhccccccccCCCCCCCchhhHHHHHHH---hccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhh
Q 012918 196 KHISKKAEDTNGSFNDGPGAVLVNLLTS---LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEV 272 (453)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~ 272 (453)
....+++++++.+ +++.+ .+.+.+++.|+-.=|.++.+-..+.|-.. .|+-+
T Consensus 232 ---------------~~l~~g~k~L~~t~k~i~~~~-~i~~FLiA~~~~~DGv~til~~~~~fg~~-~~gls-------- 286 (438)
T COG2270 232 ---------------TALRNGFKELKSTFKEIRGRK-NLVLFLIARFFYIDGVNTILAMGGVFGAA-DLGLS-------- 286 (438)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHhhHHHHHHHHHHHHHH-HcCcc--------
Confidence 0012334444333 33333 66777888888777888888887765321 23211
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhH
Q 012918 273 KFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAI 352 (453)
Q Consensus 273 ~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (453)
+ ..+..++ +.-++++++.+++.|+|-||+|.|++...|.++..+..+...+.. .
T Consensus 287 ----~-~~lll~g-~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~----~---------------- 340 (438)
T COG2270 287 ----S-TELLLIG-IALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE----G---------------- 340 (438)
T ss_pred ----H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc----c----------------
Confidence 1 1233233 345578889999999999999999999998777655443322222 1
Q ss_pred HHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHH
Q 012918 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLS 432 (453)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~ 432 (453)
....+++-.+.|.+.|.......++.++..|++ +.|..+|++|++--..-++.+...+.+.+..|+. +..+..-.++
T Consensus 341 ~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~--k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-r~g~~~i~vl 417 (438)
T COG2270 341 ELDFWILGLLVGTSLGGAQASSRSYLARLVPKG--KEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-RAGVLSIIVL 417 (438)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc--cccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-hhHHHHHHHH
Confidence 223444556688888889999999999999986 7899999999999999999999999998888864 3445555555
Q ss_pred HHHHHHHhheeccCC
Q 012918 433 ALAGGVVATLKLPHL 447 (453)
Q Consensus 433 ~liaa~~v~~~vpet 447 (453)
.+++.+ ..+++|+.
T Consensus 418 l~iGl~-~L~~v~~~ 431 (438)
T COG2270 418 LLIGLL-LLLRVKVP 431 (438)
T ss_pred HHhhHh-hEEeecCC
Confidence 555554 56777765
No 88
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.10 E-value=5.2e-09 Score=108.20 Aligned_cols=274 Identities=12% Similarity=0.039 Sum_probs=144.5
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
......+++.|..|+++|+++.++......+|..+|..+++.. .+ ...||+.|.+.++..+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l--~~-------------~~gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 121 IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAAL--MH-------------FVHWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------hcCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999998888641 10 12699999998887666655
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
...+..||++..+.+ +. . . .+.
T Consensus 186 ~~~~~lp~~~~~~~~--~~-------------------------------------------------~----~---~~~ 207 (413)
T PRK15403 186 GLLLAMPETVKRGAV--PF-------------------------------------------------S----A---KSV 207 (413)
T ss_pred HHHHhCCCCccccCC--CC-------------------------------------------------C----h---HHH
Confidence 555567876421000 00 0 0 001
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
...+++++++ |.++..++..++.+.+++.+..+.+.++.+ .++.++ . ..| +.........
T Consensus 208 ~~~~~~ll~~-----~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~-~~g~s~-----------~--~~g-l~~~~~~~~~ 267 (413)
T PRK15403 208 LRDFRNVFRN-----RLFLTGAATLSLSYIPMMSWVAVSPVILID-AGGMTT-----------S--QFA-WTQVPVFGAV 267 (413)
T ss_pred HHHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHhChHHHHH-hcCCCH-----------H--HHH-HHHHHHHHHH
Confidence 1122333322 456666666666777777676677766554 233221 1 122 2233334455
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.+.+.+..++.++..+++....+..+..++.+.+.+......+ + ....++..++++++.+.....
T Consensus 268 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~------------~---~~~~~~~~~l~~~G~~~~~p~ 332 (413)
T PRK15403 268 IVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH------------V---WLWSVLGTSLYAFGIGLIFPT 332 (413)
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc------------c---HHHHHHHHHHHHHHHHHHhHH
Confidence 5666777777655444444322222222333222221110001 1 212233444555655554443
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
-.+. + +.+.+ ...|+..|+.+......-.+.+...+.+... +. ...|...++++.+......
T Consensus 333 ~~~~-a-l~~~~-~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 394 (413)
T PRK15403 333 LFRF-T-LFSNN-LPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GG--RLPFHLLAVVAGVIVVFTL 394 (413)
T ss_pred HHHH-H-hccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC--chHHHHHHHHHHHHHHHHH
Confidence 1111 1 22222 1357778888777766666666666655443 32 2356555555444444333
No 89
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.10 E-value=2.2e-09 Score=109.40 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...+.+..++.+++.+++.||+|+|++...+..+.+++.+... .. . .... ...+.|+
T Consensus 241 ~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~---~---------------~~~~---~~~l~g~ 297 (381)
T PRK03633 241 MALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ---A---------------AMAP---ALFILGA 297 (381)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh---H---------------HHHH---HHHHHHH
Confidence 4456667778889999999999999998888777666543222 10 0 0111 1122333
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
+.+.....-.+.+.|..|++ ..+...+..+.+..+++.+.+...|.+.+..|. ...|.+.+.+.+++.++..+
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHH--ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD--NLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHhHHHHHHHHHHccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHh
Confidence 33333344445667777654 456668888888899999999999999887773 35788888888877766544
No 90
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.09 E-value=3.3e-09 Score=108.34 Aligned_cols=247 Identities=14% Similarity=0.003 Sum_probs=136.2
Q ss_pred cchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 54 VQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 54 ~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
......+++.|..|++++++++++.+....+|..+|..++... .+ ...||+.|.+.++..++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l--~~-------------~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 113 GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL--TT-------------LFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------------ccChHHHHHHHHHHHHHHHH
Confidence 3444677889999999999999999888888888888776541 00 12589999887766544444
Q ss_pred heeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCc
Q 012918 134 VTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGP 213 (453)
Q Consensus 134 it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (453)
+..+..||+|..+.+ + .+.
T Consensus 178 ~~~~~~~~~~~~~~~--~-----------------------------------------------------------~~~ 196 (394)
T PRK11652 178 SMARWMPETRPADAR--R-----------------------------------------------------------TRV 196 (394)
T ss_pred HHHHhCCccCccccc--h-----------------------------------------------------------hHH
Confidence 445567775421100 0 001
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHH
Q 012918 214 GAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVL 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~ 293 (453)
...+++.++ .+.++..++..+....+...+..+.+.++.+ .++.+ .. ..| +......+..
T Consensus 197 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~------------~~-~~~-~~~~~~~~~~ 256 (394)
T PRK11652 197 LASYRTLLS-----NRRFNCYLLMLIGTLAGIAVFEACSGVLMGA-VLGLS------------SM-TVS-ILFILPIPAA 256 (394)
T ss_pred HHHHHHHHc-----ChHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HcCCC------------HH-HHH-HHHHHHHHHH
Confidence 112233332 2334444444444444555445455555443 22222 11 122 2233455566
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.+.+.+.+++.||.+++........+.+ .+......... . . ..+.......+.|++.+.....
T Consensus 257 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~------------~--~~~~~~~~~~~~~~g~~~~~~~ 319 (394)
T PRK11652 257 FFGAWFAGRPNKRFSTLMWQSVICCLLA--GLLMWIPGWFG-V------------M--NVWTLLVPAALFFFGAGMLFPL 319 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc-c------------c--cHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888884332222221111 11111111000 0 0 1222334445566666665555
Q ss_pred cchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee
Q 012918 374 PFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 374 P~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
-.+.+.|..|+ ..|+..++.+....+++.+.+..++.+..
T Consensus 320 ~~~~~~~~~~~---~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 320 ATSGAMEPFPY---LAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHhhccc---cchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44566677763 57888999999988999998888776643
No 91
>PRK10054 putative transporter; Provisional
Probab=98.98 E-value=2.1e-09 Score=110.44 Aligned_cols=182 Identities=11% Similarity=0.020 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhh
Q 012918 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (453)
Q Consensus 226 ~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d 305 (453)
++||+++.++++.|+.+.|+....-+.+.|+.++ ++-+ . ...| +.+..+.+...+.+.+.+++.|
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-~g~s------------~-~~~g-~~~s~~~~~~~~~~~~~G~l~D 68 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQ-YSLS------------V-DLIG-YAMTIALTIGVVFSLGFGILAD 68 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC------------H-HHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888888999999999888888888876542 2222 1 1233 4555667778888899999999
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC
Q 012918 306 WIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (453)
Q Consensus 306 ~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 385 (453)
|+|||+++..+.+..+++++...+... .+..++...+.|.+.+....+-.++.+|..|++
T Consensus 69 r~g~k~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 128 (395)
T PRK10054 69 KFDKKRYMLLAITAFASGFIAIPLVNN--------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSST 128 (395)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh
Confidence 999999999888877776655554431 222333344556666655444456778888765
Q ss_pred CCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 386 ~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
.+|+.+|+.+....++..+.+...+.+.+ .| ...+|.+.+++.+++.+++.+.+||+
T Consensus 129 --~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g--~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 129 --SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS--INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57777999999999999999888887664 44 23578888888888776665656654
No 92
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.98 E-value=4.9e-09 Score=109.70 Aligned_cols=295 Identities=15% Similarity=0.171 Sum_probs=185.4
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++..+.......+++--+|+++|++..++......+|.+++.-+++.+ -+ ....|+..|++.+
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~l--c~------------s~~GW~sifY~~g 202 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLL--CE------------SSLGWPSIFYVFG 202 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--hc------------cCCCCchHHHHHH
Confidence 344555566667888889999999999999999999889988888555431 00 0136999999988
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
+..++..++-.++..|+|.....-.+ +|.+ .|++..
T Consensus 203 ~~g~i~~~~w~~~~~d~P~~h~~is~-----------------------------------------~El~---~I~~~k 238 (466)
T KOG2532|consen 203 IVGLIWFILWFLFYSDSPSKHPNISE-----------------------------------------KELK---YIEKGK 238 (466)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCH-----------------------------------------HHHH---HHHhcc
Confidence 88888888878888888854211100 0111 111000
Q ss_pred CC-CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 206 NG-SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
.+ +.+.....++++++++ ++++.+++++|..-.+.+.++.|.|.|+.| +++-|- -+.|. ..++
T Consensus 239 ~~~~~~~~~~vP~~~i~ts-----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v---------~~~G~-~sal 302 (466)
T KOG2532|consen 239 SEAHVKKKPPVPYKAILTS-----PPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDV---------RETGF-LSAL 302 (466)
T ss_pred cccccCCCCCCCHHHHHcC-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCCh---------hhhhH-HHHH
Confidence 00 0001134578888876 578899999999999999999999999987 555441 12232 2223
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCc--------chhh-HHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGS--------RLVW-AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVA 355 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~gr--------r~l~-~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (453)
-.+ ...+..++.+.+.||+.+ ||++ .++....+++++.++++... + .+.....
T Consensus 303 P~l----~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~--~------------~~~a~~~ 364 (466)
T KOG2532|consen 303 PFL----AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE--H------------RLLAVIL 364 (466)
T ss_pred HHH----HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC--c------------chHHHHH
Confidence 333 344444555555555432 3333 35777777777666665421 0 1122333
Q ss_pred HHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc--ccchhhHhHHHHHH
Q 012918 356 SLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG--GGNIPAFVLASLSA 433 (453)
Q Consensus 356 ~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g--~~~~~~f~~~a~~~ 433 (453)
+.+.+++.|...+-+ ......+ ..|..|..+|+.|...++++++.+.+.|.++. -+ .+-..+|.+.+++.
T Consensus 365 l~~~~~~~g~~~~Gf-----~~~~~~~--apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~t~~eW~~VF~i~a~i~ 436 (466)
T KOG2532|consen 365 LTIAIGLSGFNISGF-----YKNHQDI--APQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DNTREEWRIVFLIAAGIL 436 (466)
T ss_pred HHHHHHHcccchhhh-----Hhhhhhc--cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CCCHHHHHHHHHHHHHHH
Confidence 333344444443332 2323332 22478999999999999999999999999985 22 12355799999988
Q ss_pred HHHHHHh
Q 012918 434 LAGGVVA 440 (453)
Q Consensus 434 liaa~~v 440 (453)
+++.++-
T Consensus 437 ~~~~i~f 443 (466)
T KOG2532|consen 437 IVGNIIF 443 (466)
T ss_pred HHhchhe
Confidence 8877643
No 93
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.3e-08 Score=102.72 Aligned_cols=290 Identities=14% Similarity=0.198 Sum_probs=178.4
Q ss_pred chhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q 012918 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALV 134 (453)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~i 134 (453)
..|+-..|.--.|+++||+..++=+..-++|+.+.-.+.. |.... ...+||..|++.+++.++.-++
T Consensus 135 wpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~---la~~~----------~~~~w~~~f~~pgiiaiival~ 201 (448)
T COG2271 135 WPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL---LAFFA----------FHGGWRAAFYFPGIIAIIVALI 201 (448)
T ss_pred CcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHH---HHHHH----------hccchhHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988877777888777655441 10010 1248999999999998888888
Q ss_pred eeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCch
Q 012918 135 TIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPG 214 (453)
Q Consensus 135 t~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (453)
.++..+|+|...--+. .++.+.| ..+.+ ++ | +.++.
T Consensus 202 ~~~~~rd~Pqs~GLP~----------------ie~~~~d------------------~~e~~-----~~---~--~~~~~ 237 (448)
T COG2271 202 LLFLLRDRPQSEGLPP----------------IEEYRGD------------------PLEIY-----EE---E--KENEG 237 (448)
T ss_pred HHHHhCCCccccCCCC----------------HHHhhcC------------------chhhh-----hh---h--ccCCC
Confidence 8888999885321110 1111111 00000 00 0 00122
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHH
Q 012918 215 AVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLG 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~ 294 (453)
.+.++++....-.-|.+|.+|++.++..+-=+.+.--.+.|+.| .- .|+. ..+.++...|=+...
T Consensus 238 ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e-~k------------~~s~--~~a~~a~~lfE~agl 302 (448)
T COG2271 238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSE-VK------------GFSL--VKANWAISLFEVAGL 302 (448)
T ss_pred ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hc------------CCCH--HHHHHHHHHHHHHhh
Confidence 45666665544445788899999998777666666666766554 21 1222 234467777778888
Q ss_pred HHhhhHHHhhhhc--CcchhhHHH-HHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhc
Q 012918 295 VSSFLIEPMCRWI--GSRLVWAIS-NFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (453)
Q Consensus 295 i~s~~~~~l~d~~--grr~l~~~g-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (453)
..+++.++++||+ |||...-+. .+...++++...... ++ +.+...+++...|+ +.
T Consensus 303 ~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~----~~--------------~~~l~~~~l~~iGf----~I 360 (448)
T COG2271 303 PGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAP----NG--------------SYLLDAILLFIIGF----LI 360 (448)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCC----Cc--------------cHHHHHHHHHHHHH----HH
Confidence 9999999999997 778765442 222222221111111 10 12222233333333 22
Q ss_pred cccchhh----cccccCCCCCcceeehhhHHHHHH-HHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 372 SVPFAIT----AELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 372 ~vP~aLi----se~~p~~~r~~G~~~gi~n~~~~l-~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.-|-.|+ .|..|++ ..|+..|..+.+.++ +...+....|.+.+..|=+ ..|.+..+.++++.++...
T Consensus 361 yGPqmLiGl~a~e~~pK~--AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~--g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 361 YGPQMLIGLAAAEFVPKK--AAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD--GGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hhHHHHHHHHHhccccHh--hccchhchhhhHHHHhhHHhcCCcceeeEecCCCc--chHHHHHHHHHHHHHHHHH
Confidence 3333333 4777775 799999999999999 9999999999998876532 3577767766666665443
No 94
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.95 E-value=1.3e-08 Score=106.11 Aligned_cols=282 Identities=10% Similarity=0.012 Sum_probs=162.3
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc---------ccccccccccchhhhcccchhhHHHHH
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG---------SWHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~---------~~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
....+.-..+....|+++||++.++.+-..++|..++.++.-.. -|+....- .+ + ...||..+.+
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~-~g---~--~~~~~~~~~~ 216 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQA-DG---S--VMSLANAAWI 216 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccc-cc---c--hHHHHHHHHH
Confidence 35567888899999999999999999877778877655444210 01100000 00 0 1236666655
Q ss_pred HHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccc
Q 012918 124 AVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAE 203 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (453)
-.++.+++.++..+..++.|. + +
T Consensus 217 ~~~~~iv~~i~~~~~~~~~~~---~--~---------------------------------------------------- 239 (462)
T PRK15034 217 WVPLLAIATIAAWSGMNDIAS---S--R---------------------------------------------------- 239 (462)
T ss_pred HHHHHHHHHHHHHHhCCCccc---c--c----------------------------------------------------
Confidence 555544444333444444321 0 0
Q ss_pred ccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHH
Q 012918 204 DTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGA 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~ 283 (453)
.++++..+ ..+.|+ .|.+|+..+..+-++..+.+|++.|..+ .|. +.+. .
T Consensus 240 -----------~~~~~~~~-vlk~~~-~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~-------------~~~~---l 289 (462)
T PRK15034 240 -----------ASIADQLP-VLQRLH-LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFP-------------DVNI---L 289 (462)
T ss_pred -----------cCHHHHHH-HhCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-------------hHHH---H
Confidence 01122221 223443 5667777777777777777777776433 221 0110 1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
....+..++..+...+.+++.||+|+|++..++.+.+.++........ + .+. .. . -+.-....+.++...
T Consensus 290 ~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p-~~~---~~-~---~~~~~~~~~~l~~~~ 359 (462)
T PRK15034 290 RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--P-GTG---SG-N---FIAFYAVFMGLFLTA 359 (462)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--c-ccc---cc-H---HHHHHHHHHHHHHHh
Confidence 112234466677777899999999999999988776666543322221 1 000 00 0 011223334455667
Q ss_pred ccchhhhccccchhhcccccC-------------------CCCCcceeehhhHHHHHHHHHHHhhccccceecccccchh
Q 012918 364 GFPLAITYSVPFAITAELTAD-------------------SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIP 424 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~-------------------~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~ 424 (453)
|++-|.+. .++.+++|+ .+|..|...|+.+..-.++-++.+..+|...+..|+. ..
T Consensus 360 G~gngsvf----k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~-~~ 434 (462)
T PRK15034 360 GLGSGSTF----QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP-VG 434 (462)
T ss_pred cccchHHH----HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc-HH
Confidence 88877765 355666663 0125677888888888888888898888888888865 35
Q ss_pred hHhHHHHHHHHHHHHhhe
Q 012918 425 AFVLASLSALAGGVVATL 442 (453)
Q Consensus 425 ~f~~~a~~~liaa~~v~~ 442 (453)
.|+.+.++-+++.+..++
T Consensus 435 ~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 435 AMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777776666655543
No 95
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.92 E-value=4.2e-09 Score=108.40 Aligned_cols=181 Identities=15% Similarity=0.073 Sum_probs=129.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhh
Q 012918 225 RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (453)
Q Consensus 225 ~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~ 304 (453)
+++|| +.+..+.++.+.+.+.+.-|.+.|+.+ .++.+ ....| +.+..+.+...+.+.+.+++.
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s-------------~~~~g-l~~~~~~l~~~~~~~~~G~l~ 70 (400)
T PRK11646 8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVD-QLGWA-------------AVMVG-IALGLRQFIQQGLGIFGGAIA 70 (400)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCc-------------HHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 45777 456788999999988888888877543 12211 11233 444556677777789999999
Q ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccC
Q 012918 305 RWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (453)
Q Consensus 305 d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~ 384 (453)
||+|||+++..+.++.+++++...+.. + .+...+...+.|++.+.....-.+++.|..|+
T Consensus 71 dr~g~k~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 130 (400)
T PRK11646 71 DRFGAKPMIVTGMLMRAAGFATMAIAH----E----------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRP 130 (400)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999888888776654432 1 33344455667776665443335678888887
Q ss_pred CCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 385 ~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+ .+|..+|+.+....+++.+.+...|.+. ..| ..+.|++.+++.++++++..+++||.
T Consensus 131 ~--~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g--~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 131 H--QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD--FRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5 5777899999999999999999888877 444 34578888888887777666677764
No 96
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.91 E-value=8.4e-08 Score=96.98 Aligned_cols=297 Identities=18% Similarity=0.164 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccch
Q 012918 37 AFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGN 116 (453)
Q Consensus 37 i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~ 116 (453)
.+++.+.+.+..+++++.+.|.-|++.|.+|||+|+++.++.-.|.-+|.+++-.+.+.. ++.+- ...
T Consensus 89 ~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l-L~~~s-----------~~r 156 (403)
T PF03209_consen 89 LALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL-LDPFS-----------PER 156 (403)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-ccccC-----------HHH
Confidence 344567788899999999999999999999999999999999999999998877655431 22110 012
Q ss_pred hhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhh
Q 012918 117 LKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLK 196 (453)
Q Consensus 117 ~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (453)
...++...++..++..++.++ -.|++.....+.+
T Consensus 157 L~~v~~~~a~i~~~l~~ia~w-g~E~r~~~~~~~~--------------------------------------------- 190 (403)
T PF03209_consen 157 LIQVIQGVALIALLLNLIALW-GQEPRRSRRAAAA--------------------------------------------- 190 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccCCcccccCC---------------------------------------------
Confidence 222222222222222222222 2222211111000
Q ss_pred hccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHH
Q 012918 197 HISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYD 276 (453)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~ 276 (453)
.++..++++.++.++.-|+. ++....-++.-++++.==.-.-+|=|| +|+..+.+ -...
T Consensus 191 --------------~~~~~~f~~a~~~~~~~~~a-~~f~~fl~l~t~a~~~QD~iLEPygg~-Vfgmsv~e----TT~L- 249 (403)
T PF03209_consen 191 --------------ERPRPPFREAWRQVWASPQA-RRFFVFLFLGTLAFFMQDVILEPYGGE-VFGMSVGE----TTRL- 249 (403)
T ss_pred --------------CCCCccHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHhhHHHcCCchhH-HcCCCHHH----HHHH-
Confidence 01233455555555444443 333333444333432111111122222 34333211 0011
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhHHH-hhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHH
Q 012918 277 QGVREGAFGLLLNSVVLGVSSFLIEP-MCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVA 355 (453)
Q Consensus 277 ~gv~~g~~~l~~~s~~~~i~s~~~~~-l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (453)
.+.|+ .-..+.-...++ +.+|.+.+++-..|..+.++++....+.... + +.+.
T Consensus 250 ----ta~~~-----~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~--~---------------~~~~ 303 (403)
T PF03209_consen 250 ----TAFWG-----GGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL--G---------------SPWL 303 (403)
T ss_pred ----HHHHH-----HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc--c---------------cchH
Confidence 11111 111111112222 3457788887777877777777655544422 1 1233
Q ss_pred HHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceec----cccc----chhhHh
Q 012918 356 SLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL----FGGG----NIPAFV 427 (453)
Q Consensus 356 ~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~----~g~~----~~~~f~ 427 (453)
.-.-..++|++-|.+..--.+++-+..+.+ ..|+.||....+..+++-+.....|.+.|. .+.+ +..+|.
T Consensus 304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~--~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~ 381 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAG--RAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA 381 (403)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 334455677777766555445666666544 689999999999999999999988877653 2211 134566
Q ss_pred HHHHHHHHHHHHh
Q 012918 428 LASLSALAGGVVA 440 (453)
Q Consensus 428 ~~a~~~liaa~~v 440 (453)
+-++..+++.+..
T Consensus 382 lEa~ll~~a~~ll 394 (403)
T PF03209_consen 382 LEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
No 97
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.89 E-value=7.4e-09 Score=88.29 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
.+++...+.+.+.+++.||+|||+.+..+....+++.....+.. + .....+...+.|++.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~ 65 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS----N----------------ITVLIIARFLQGFGA 65 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHH
Confidence 34566778889999999999999999988777776665444332 1 334455667788888
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+.......+++.|..|++ .+|+.+|+.+....+++.+.+...+.+.+..|. ...|.+.+++.+++.+...++.|||
T Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 66 AFALVAGAALIADIYPPE--ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW--RAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHhHHHHHHHHCChh--hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 887778888999999876 567779999999999999999998888766552 3478888888888888888888886
No 98
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.87 E-value=1.3e-08 Score=107.59 Aligned_cols=170 Identities=8% Similarity=0.045 Sum_probs=122.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhh
Q 012918 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (453)
Q Consensus 226 ~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d 305 (453)
+.|+.++.++.+.++.-.+++.+.-+...|+.+. ++-+ + ....+....+.....+...+.+++.|
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-lg~~------------~--~~a~~i~~~~~~~~~~~~~~~G~laD 75 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-LGFS------------Q--EQAFITFGAFAALVYGLISIGGYVGD 75 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC------------H--HHHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 3688888888888877777776666666665442 2211 1 12234555566666666778999999
Q ss_pred h-cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccC
Q 012918 306 W-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (453)
Q Consensus 306 ~-~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~ 384 (453)
| +||||++..|.++++++....++... . ....++..++.|++.|.....+.++++|.+|+
T Consensus 76 r~~G~r~~~~~g~~~~~~g~~~~~~~~~---~----------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~ 136 (489)
T PRK10207 76 HLLGTKRTIVLGAIVLAIGYFMTGMSLL---K----------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPP 136 (489)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhcc---c----------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence 9 99999999999999887766554421 0 11222345567888888888888999999988
Q ss_pred CCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHH
Q 012918 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASL 431 (453)
Q Consensus 385 ~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~ 431 (453)
++|+++..+++....+.++..+.+...|.+.+..| ..+.|.+.++
T Consensus 137 ~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i 181 (489)
T PRK10207 137 KDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGA 181 (489)
T ss_pred CchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHH
Confidence 76556777999999999999999988888887776 3457877654
No 99
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.86 E-value=6.4e-09 Score=107.52 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
.+...++.+...+..++.+++.||+|||+++..+.++++++.+...+.. + ....++.-.+
T Consensus 54 ~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~----~----------------~~~l~~~r~l 113 (413)
T PRK15403 54 PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT----S----------------MTQFLIARFI 113 (413)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC----C----------------HHHHHHHHHH
Confidence 3555667777888889999999999999999999888877666555442 1 3334444455
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.|++.+....+.++++.|.+|++ ..++.+|+.+....++..+.+...+.+.+..| ..+.|++.+++++++.+...+
T Consensus 114 ~Gi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 114 QGTSICFIATVGYVTVQEAFGQT--KGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--WKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHH
Confidence 67766655556678889999875 45666999999999999888877777765544 345799889888888777667
Q ss_pred eccCCCC
Q 012918 443 KLPHLSS 449 (453)
Q Consensus 443 ~vpet~g 449 (453)
.+|||+.
T Consensus 190 ~lp~~~~ 196 (413)
T PRK15403 190 AMPETVK 196 (413)
T ss_pred hCCCCcc
Confidence 7899864
No 100
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.80 E-value=4.1e-08 Score=99.18 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+.+..+.++.+++.+...+.. + ....++...+.
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~ 103 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN----N----------------IETLLVLRFVQ 103 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 555667777888899999999999999999998888777666554442 1 33455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.....-.+++.|+.|++ .+|+.+|+.+....+++.+.+...+.+.+..| ....|.+.+++.++..+...+.
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPGE--ELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887777778999999865 57778999999999999999888887776655 2357888888888877777777
Q ss_pred ccCCCCC
Q 012918 444 LPHLSSN 450 (453)
Q Consensus 444 vpet~g~ 450 (453)
.||++.+
T Consensus 180 ~~~~~~~ 186 (385)
T TIGR00710 180 LPETLPY 186 (385)
T ss_pred CCCCCCC
Confidence 8887644
No 101
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.79 E-value=2.7e-08 Score=104.66 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
..++..++.....+++.+|++.|+++.++.++.+++.+...+..... +-. .++++ .+..+....+.++..
T Consensus 296 ~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~-~~~-----~gi~~----~~~~~~~~~l~~~~~ 365 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRW-NLA-----FGISD----EVFVLGDSIIAEVLA 365 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecc-ccc-----cCCCC----eeeeeehhHHHHHHH
Confidence 34477777888889999999999999998888877654432211000 000 00000 111122223344444
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc-----ccc-hhhHhHHHHHHHHHHHHhh
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----GGN-IPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g-----~~~-~~~f~~~a~~~liaa~~v~ 441 (453)
+.....-..++++..|++ ..|++.|++++...+++.+.+...|.+.+.+| .++ .....+..++.++...++
T Consensus 366 g~~~~~~~~~~~~~~p~~--~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~- 442 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPSG--CESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLL- 442 (468)
T ss_pred HHHHccHHHHHHHhCCCC--ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-
Confidence 443333356888888875 78999999999999999999988888888777 332 122444445555555554
Q ss_pred eecc
Q 012918 442 LKLP 445 (453)
Q Consensus 442 ~~vp 445 (453)
+++|
T Consensus 443 ~llP 446 (468)
T TIGR00788 443 HLLP 446 (468)
T ss_pred HhCC
Confidence 3788
No 102
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.79 E-value=3e-08 Score=101.14 Aligned_cols=182 Identities=9% Similarity=0.001 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
|++.+..++...|...++-+.+.-..+.+..| ++-+ . ....+....+.+...+.+.+.+++.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s------------~--~~~g~~~s~~~~~~~~~~~~~g~l~dr 64 (382)
T PRK10091 1 MKKVILSLALGTFGLGMAEFGIMGVLTELAHD--VGIS------------I--PAAGHMISYYALGVVVGAPIIALFSSR 64 (382)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHhChHHHHHH--cCCC------------H--HHHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 56677777888887777655555555554322 2211 1 112255566778888999999999999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCC
Q 012918 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (453)
Q Consensus 307 ~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~ 386 (453)
+|||+++..+.++.+++.+...+.. + .+..++.-.+.|++.+.......++++|+.|++
T Consensus 65 ~g~r~~~~~~~~~~~~~~~l~~~~~----~----------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~- 123 (382)
T PRK10091 65 YSLKHILLFLVALCVIGNAMFTLSS----S----------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG- 123 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH-
Confidence 9999999999888887666555443 1 344555666788888776666667888888765
Q ss_pred CCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
+++..+|+......+++.+.+...+.+.+..| ..++|.+.++.+++..+...+.+||.+
T Consensus 124 -~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 124 -KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS--WRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred -HhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56667898888888888887777666665554 346788888888777766666788754
No 103
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.79 E-value=2.7e-08 Score=98.87 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhH
Q 012918 235 LIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA 314 (453)
Q Consensus 235 ~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~ 314 (453)
+++.|+..++...+....+.++.+ -++.++ + ..| +....+.+...+.+.+.+++.||+|||+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~s~----------~---~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~ 66 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE-ELGLSP----------S---QIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLI 66 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC-CSTTTS----------H---CHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-ccCCCH----------H---HHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEe
Confidence 455666666655555555533322 123221 1 122 4555677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeeh
Q 012918 315 ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (453)
Q Consensus 315 ~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~g 394 (453)
.+.++.+++.+...+.. + .+..++...+.|++.+.......+++.|++|++ ++++.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~--~~~~~~~ 124 (352)
T PF07690_consen 67 IGLLLFALGSLLLAFAS----N----------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPE--ERGRAFG 124 (352)
T ss_dssp HHHHHHHHHHHHHHHHC----C----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC--CHHHHHH
T ss_pred ehhhhhhhHHHHhhhhh----h----------------HHHHhhhccccccccccccccccccccccchhh--hhhhccc
Confidence 99988888743333321 2 235566677899998888888889999999985 6777899
Q ss_pred hhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 395 VLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 395 i~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+.+....++.++.+.+.+.+.+..|- ...|++.+++.++++++...+.|
T Consensus 125 ~~~~~~~~g~~~g~~l~~~l~~~~~~--~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 125 ILSAGFSLGSILGPLLGGFLISYFGW--RWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHCHH--CCHHHHHHHHHHHHHHHHHCCC-
T ss_pred cccchhhhhhhcccchhhhhhhcccc--ccccccccchhhhhhhhHhhhhh
Confidence 99999999999999999888866663 35799999999998876445544
No 104
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.77 E-value=2.3e-08 Score=99.71 Aligned_cols=180 Identities=11% Similarity=0.009 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchh
Q 012918 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (453)
Q Consensus 233 ~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l 312 (453)
.++..+++..++........+.|+.+ ++.+ . ...| +...++.+...+.+.+.+++.||+|||++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s------------~-~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 66 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA--GTGS------------A-SVLS-LAALAGMLPYVVLSPIAGALADRYDRKKV 66 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH--hhcc------------H-HHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHH
Confidence 35667777777666555555555432 1211 1 1122 55667778888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCccee
Q 012918 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (453)
Q Consensus 313 ~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~ 392 (453)
+..+.++.+++.....+.... ++ .+.+..++...+.|++.+.....-.++++|..|++ ++|..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~ 129 (365)
T TIGR00900 67 MIGADLIRAVLVAVLPFVALL--GG-------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE--QLTQA 129 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 999888777766555554321 00 01344555666778888887777778999999876 67778
Q ss_pred ehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee-ccCC
Q 012918 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK-LPHL 447 (453)
Q Consensus 393 ~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~-vpet 447 (453)
+|+.+....+++++.+.+.+.+.+..|- ...|++.++..+++.++.... .||.
T Consensus 130 ~~~~~~~~~~g~~~g~~l~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 130 NSLSQAVRSLFYIVGPGIGGLMYATLGI--KWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999888888776653 356887777777766654433 4544
No 105
>TIGR00895 2A0115 benzoate transport.
Probab=98.76 E-value=3.7e-08 Score=99.47 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+.+..+.++.+++.+...+.. + ....++...+.
T Consensus 56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~ 115 (398)
T TIGR00895 56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT----N----------------VTQLLILRFLA 115 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc----c----------------hHHHHHHHHHH
Confidence 344456677788899999999999999999998887777665544432 1 33445566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......++++|..|++ .+|+.+|+.+....+++.+.+...+.+.+..|-. ..|.+.++++++..+...++
T Consensus 116 g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 191 (398)
T TIGR00895 116 GLGLGGLMPNLNALVSEYAPKR--FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR--SLFYVGGIAPLLLLLLLMRF 191 (398)
T ss_pred hcccccchhhHHHHHHHHcCHH--hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce--eehhhhhhHHHHHHHHHHHh
Confidence 8988888888888999999875 5677799999999999999999888887766633 46777776777666666677
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||+.
T Consensus 192 ~~~~~ 196 (398)
T TIGR00895 192 LPESI 196 (398)
T ss_pred CCCCC
Confidence 88764
No 106
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.75 E-value=2e-07 Score=96.47 Aligned_cols=269 Identities=13% Similarity=0.070 Sum_probs=140.9
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc---cccc---ccccccchhh-----hccc
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG---SWHR---WFPFLTSRAC-----CAAC 114 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~---~~~~---~~~~~~~~~~-----~~~~ 114 (453)
+.-++....+.+..+++.+..|+++|++..++.+...++|..+|..++... ..+. .......... ....
T Consensus 103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (410)
T TIGR00885 103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL 182 (410)
T ss_pred HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence 344556677778889999999999999999999999999999998776531 0000 0000000000 0001
Q ss_pred chhhHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchh
Q 012918 115 GNLKAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (453)
Q Consensus 115 ~~~r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (453)
.+||+.|.+.+++.++..++ ....|+++. ++++ +.
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~-~~~~~~p~~---~~~~--~~--------------------------------------- 217 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALL-IMLTKMPAL---NHSD--AK--------------------------------------- 217 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCCC---Cccc--cc---------------------------------------
Confidence 35999998776654433322 222222110 1000 00
Q ss_pred hhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhh
Q 012918 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKF 274 (453)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~ 274 (453)
+ + ...+..+++++. +.++..++..|+-..+-.....|.++|..+...+ .
T Consensus 218 -~----------~----~~~~~~~~~~~~-----~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~-~---------- 266 (410)
T TIGR00885 218 -Q----------I----SFSASLSRLARI-----RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPG-M---------- 266 (410)
T ss_pred -c----------c----cchhhHHHHHhC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C----------
Confidence 0 0 001122333322 2344455666664444445666677765432111 1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHH
Q 012918 275 YDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKV 354 (453)
Q Consensus 275 y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (453)
+++.. + ..+..+-....+.-++.+++.||+++|+++.+..++..++++...+.. + ..
T Consensus 267 -~~~~a-~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~-----------------~---~~ 323 (410)
T TIGR00885 267 -TAGFA-A-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG-----------------G---HV 323 (410)
T ss_pred -CHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-----------------C---hH
Confidence 11111 1 111122244567788889999999999988776555555444333321 1 11
Q ss_pred HHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc
Q 012918 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (453)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~ 418 (453)
.+..+.+.|+..+.....-|++..+..+++ .....+.+-++ .++-.+.+.++|.+.+..
T Consensus 324 -~~~~l~~~glf~s~~fp~i~sl~~~~~g~~---~~~~s~~l~~~-~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 324 -GLYCLTLCSAFMSLMFPTIYGIALKGLGQD---TKYGAAGLVMA-IIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhHHHHHHH-HhccchHHHHHHHHHHHh
Confidence 233444455555555555556777777654 12223333333 378888888888888743
No 107
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.75 E-value=5.7e-08 Score=103.10 Aligned_cols=185 Identities=10% Similarity=0.028 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhh
Q 012918 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR 305 (453)
Q Consensus 226 ~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d 305 (453)
+.|+.++.++...++...++..+..+.+.|+.++ ++-+ + ....+....+.........+.+++.|
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s------------~--~~a~~~~~~~~~~~~~~~~~~G~LaD 82 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-LGMS------------E--ADSITLFSSFSALVYGLVAIGGWLGD 82 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC------------H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889999998888888888888876542 2222 1 11112222333344444567899999
Q ss_pred h-cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccC
Q 012918 306 W-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTAD 384 (453)
Q Consensus 306 ~-~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~ 384 (453)
| +|||+++..|.+++++++....+.. + .....++...+.|++.|.....+.++++|.+|+
T Consensus 83 r~~G~r~~~~~g~~~~~ig~~l~~~~~----~---------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~ 143 (500)
T PRK09584 83 KVLGTKRVIMLGAIVLAIGYALVAWSG----H---------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK 143 (500)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhc----c---------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC
Confidence 9 5999999999888887765554432 1 022233344567778887777777899999987
Q ss_pred CCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHH---HHHHhheeccC
Q 012918 385 SGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALA---GGVVATLKLPH 446 (453)
Q Consensus 385 ~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~li---aa~~v~~~vpe 446 (453)
++++++..+++.+.+..++..+.+...|.+.+..| ..+.|.+.++..++ ..++..+.+||
T Consensus 144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 64455556889999999999999999998887766 34578877754444 33344444554
No 108
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.75 E-value=7.2e-08 Score=101.66 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=126.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhcccccceee-eecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhh
Q 012918 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGRE-VYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (453)
Q Consensus 226 ~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~-if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~ 304 (453)
+.|+.++.++.++++.-++++.+..+.+.|+.+. .++-+ + ....+.+..+++...+.+++.+++.
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s------------~--~~ag~~~~~~~~~~~~~~~~~G~la 72 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFS------------Q--EQAFIIFGAYSALVYLLTSVGWWFG 72 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC------------H--HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4788999999999887777777777777775432 01111 1 1222455667788899999999999
Q ss_pred hh-cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhccccc
Q 012918 305 RW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTA 383 (453)
Q Consensus 305 d~-~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p 383 (453)
|| +|||+++..+.++++++++.+++.. + .....+...+.|++.|.......+++++.+|
T Consensus 73 Dr~~G~~~~l~~~~~~~~~g~~~~~~~~----~----------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~ 132 (475)
T TIGR00924 73 DRVWGTKKTMVLGGIVLMLGHFMLAMSI----Y----------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYE 132 (475)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhcc----c----------------HhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 99 8999999999888888776555432 1 2223334456778888777777789999998
Q ss_pred CCC-CCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 384 DSG-GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 384 ~~~-r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
+++ ++++...++.+....++.++.+...|.+.+..| ....|.+.++..+++.+
T Consensus 133 ~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 133 RGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIGLL 186 (475)
T ss_pred CCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHH
Confidence 653 346677999999999999999999888877665 23577777765555443
No 109
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.75 E-value=3.6e-08 Score=103.27 Aligned_cols=177 Identities=13% Similarity=0.087 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchh
Q 012918 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (453)
Q Consensus 233 ~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l 312 (453)
.+++..++..+.........+++..+ ++.++ + .. .+....+.+...+...+.+++.||+|||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~-----------~--~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 69 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGD--LGSSL-----------S--QV-QWVITSYMLANAISIPLTGWLAKRFGTRRL 69 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCh-----------h--hh-hHHHHHHHHHHHHHHHhHHHHHHHhCcHHH
Confidence 45566666666555455555554433 33221 1 12 256667888888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCccee
Q 012918 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (453)
Q Consensus 313 ~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~ 392 (453)
+..+.++++++.+...+.. +....++...+.|++.+.....-.+++.|..|++ .+|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~--~r~~~ 127 (485)
T TIGR00711 70 FLISTFAFTLGSLLCGVAP--------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE--KRGRA 127 (485)
T ss_pred HHHHHHHHHHHHHHHhCcC--------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH--HHHHH
Confidence 9999888877665544332 1344555667788888887777778999999875 56777
Q ss_pred ehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCC
Q 012918 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (453)
Q Consensus 393 ~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g 449 (453)
+|+.++...+++.+.+...|.+.+..| ..+.|++.+.+++++.++..+.+||++.
T Consensus 128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 128 MAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 999999999999999988888877665 3457888888888877777777787543
No 110
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.73 E-value=6.4e-08 Score=98.82 Aligned_cols=142 Identities=12% Similarity=0.066 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+...+.+++.||+|||+.+..+.++++++.....+.. + ....++...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~~l~ 101 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE----T----------------SSLFLAGRFLQ 101 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHH
Confidence 445556667777889999999999999999998888777665544332 1 22333445567
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+......++++.|..|++ .+++.+|+.+....++.++.+...+.+.+..| ....|.+.++++++.++++.+.
T Consensus 102 g~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 102 GIGAGCCYVVAFAILRDTLDDR--RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred HhhhhHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777788999999875 56777899888888887777777666655554 2357888888888888777777
Q ss_pred ccCCCC
Q 012918 444 LPHLSS 449 (453)
Q Consensus 444 vpet~g 449 (453)
+||++.
T Consensus 178 ~~~~~~ 183 (392)
T PRK10473 178 LKETRP 183 (392)
T ss_pred cCCCCC
Confidence 888754
No 111
>PRK10504 putative transporter; Provisional
Probab=98.73 E-value=4.1e-08 Score=102.79 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.++.+++..|+..+....+....+.+..+ ++.++ . ..| +....+.+...+...+.+++.||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~-----------~--~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQS--LGESP-----------L--HMH-MVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH--hCcCH-----------H--HHH-HHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34556777777666655555556655433 33221 1 122 44556677778888999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|++++.+.++++++.+...+.. + ....++.-.+.|++.+.....-.+++.|+.|++ .+
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~ 132 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSG----T----------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE--QY 132 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----C----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH--HH
Confidence 9999988888777665444332 1 334455667788888877666677889999875 56
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCCC
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 450 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g~ 450 (453)
|..+|+.+....++..+.+.+.|.+.+..| ..+.|.+...+++++.+.+....|+.+-+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~~~~ 191 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGAIATLMLMPNYTMQ 191 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 777999999888999998888888877655 34578888888888887777777776543
No 112
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.72 E-value=7.3e-08 Score=97.84 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+.++.+++.+...+.. + ....++...+.
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 110 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP----G----------------YITMFIARLVI 110 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHH
Confidence 444556677888899999999999999999998887777665554443 1 33445566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|..|++ ++|..+|+.+....+++++.+...+.+.+..|.+....|.+.++..++. ++..+.
T Consensus 111 G~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~ 187 (405)
T TIGR00891 111 GIGMGGEYGSSAAYVIESWPKH--LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKN 187 (405)
T ss_pred HhhhhhhhHHHHHHHHHhCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHh
Confidence 8888888877888999999976 5777799999999999999988887776655533345676666555544 344566
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||++
T Consensus 188 ~~~~~ 192 (405)
T TIGR00891 188 IPEAE 192 (405)
T ss_pred CCCCh
Confidence 88864
No 113
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.70 E-value=9.2e-08 Score=99.44 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++.++.++.+++.+...+.. + .+...+...+.
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 121 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS----S----------------LWAFALLWVLN 121 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHH
Confidence 444567788888999999999999999999999888887776555543 1 22333333445
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.|.......++++|.+|++ .+|+.+|+.+....++..+.+.+.+.+.+..| ..+.|.+.++++++.++...++
T Consensus 122 g~~~g~~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~~~ 197 (434)
T PRK11663 122 AFFQGWGWPVCAKLLTAWYSRT--ERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLCWR 197 (434)
T ss_pred HHHHHccchHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554444457889999875 57888999999999999999988888776665 3457888887777665555555
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
+||+
T Consensus 198 ~~~~ 201 (434)
T PRK11663 198 LRDK 201 (434)
T ss_pred cCCC
Confidence 5543
No 114
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.70 E-value=5.2e-08 Score=100.04 Aligned_cols=177 Identities=14% Similarity=0.109 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
|+|.++.+++.+++.-++-..+......++.+ ++.+ +. .. .+....+.+...+.+.+.+++.||
T Consensus 1 ~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s-----------~~--~~-~~~~~~~~l~~~l~~~~~G~laDr 64 (393)
T PRK11195 1 MSKGFYAIMAAQFFSALADNALLFAAIALLKE--LHYP-----------DW--SQ-PLLQMFFVLAYIVLAPFVGAFADS 64 (393)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCc-----------HH--HH-HHHHHHHHHHHHHHHhhhhHhhhc
Confidence 45567788888888777644344434433221 1211 11 12 256667778888889999999999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCC
Q 012918 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (453)
Q Consensus 307 ~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~ 386 (453)
+|||+++..+.++++++.+...+.. + . ++.-.+.|++-+.......+++.|++|++
T Consensus 65 ~grr~vl~~~~~~~~~~~~~~~~~~----~----------------~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~- 120 (393)
T PRK11195 65 FPKGRVMFIANGIKLLGCLLMLFGI----H----------------P---LLAYGLVGIGAAAYSPAKYGILTELLPGE- 120 (393)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHH----H----------------H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHH-
Confidence 9999999999988877655433321 1 2 22335678888888888889999999976
Q ss_pred CCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
++++.+|+.+....+++++.+.+.|.+.+.. ....+.+.+++.+++.+ ..+.+||.+
T Consensus 121 -~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~~-~~~~l~~~~ 177 (393)
T PRK11195 121 -KLVKANGWMEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAAL-FNLFIPRLG 177 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 6777899999999999999999998887643 22345555544444433 456778764
No 115
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.69 E-value=4.1e-08 Score=99.10 Aligned_cols=280 Identities=14% Similarity=0.052 Sum_probs=175.4
Q ss_pred cccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHH
Q 012918 52 NTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (453)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~ 131 (453)
.+..+...++++...|||+||.+++++. +.++|..+.-+++-. ..... + ...||....+-.+++++.
T Consensus 119 GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~---------v~~~~-g--~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 119 GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL---------VAVAF-G--FLAWRNVAGIYVVALAIA 185 (417)
T ss_pred cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH---------HHHHH-h--hHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999998 888887776554421 11110 0 014788877877777777
Q ss_pred hhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCC
Q 012918 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (453)
Q Consensus 132 ~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (453)
.+...+..+|.|......++
T Consensus 186 ~v~~~~~~~d~p~~r~~~~~------------------------------------------------------------ 205 (417)
T COG2223 186 AVLAWLGMNDVPEHRASVKP------------------------------------------------------------ 205 (417)
T ss_pred HHHHHHHhCCChhhhccccc------------------------------------------------------------
Confidence 77777777776642111100
Q ss_pred CchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHH
Q 012918 212 GPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (453)
Q Consensus 212 ~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~ 291 (453)
.....++..++ .+..|.+++..+..+=++..+..|++.|..+ .|.-++ -+.|. -...+.+
T Consensus 206 ~~~~~~~~v~~-----~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-~fg~~~---------~~Ag~-----~a~~f~~ 265 (417)
T COG2223 206 QLPAQLKAVFS-----NKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-QFGLSP---------VTAGL-----IAFLFPL 265 (417)
T ss_pred cchhHHHHHhc-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCh---------hhHHH-----HHHHHHH
Confidence 00011222332 2456777777777777777788888887654 455443 12222 2223445
Q ss_pred HHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhc
Q 012918 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (453)
Q Consensus 292 ~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (453)
...+.--+.++++||+|.+|........++++..+..+......+ . ++.+.-....+.+..+.|++-|.+
T Consensus 266 ~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~-----~----~~~~~~~~~~l~l~~~~G~GnGsv- 335 (417)
T COG2223 266 IGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH-----G----GSFVVFVAVFLALFVFAGLGNGSV- 335 (417)
T ss_pred HHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc-----C----cchHHHHHHHHHHHHHhccCcchh-
Confidence 666667788999999999998888877777766544433211000 0 001222333455566677777765
Q ss_pred cccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 372 ~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
|.++..++|++ .|...|+....-.++-+..++.+|...+..|.. ...|++...+.+++.+...
T Consensus 336 ---fk~Ip~if~~~---~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~-~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 336 ---FKMIPVIFPKE---TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSY-TGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred ---eeechHHHHhh---hhHHHHHHHHhccccccchhHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHH
Confidence 45789999874 677777777666666666677777777777744 3568888887777776554
No 116
>PRK03545 putative arabinose transporter; Provisional
Probab=98.69 E-value=6.2e-08 Score=98.97 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+.++++++.+...+.. + .+..++.-.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~~~ 107 (390)
T PRK03545 48 LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW----N----------------FTVLLISRIGI 107 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHH
Confidence 444566777788888999999999999999999888888776655543 1 33344445567
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......++++|..|++ ++|+.+|+.+....+++.+.+...+.+.+..| ..+.|++.++++++..++..+.
T Consensus 108 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 108 AFAHAIFWSITASLAIRVAPAG--KKAQALSLLATGTALAMVLGLPLGRVIGQYLG--WRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCChh--hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 7777766666667899999876 56777999999999999999888887776665 3468999998888887776666
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||.+
T Consensus 184 ~~~~~ 188 (390)
T PRK03545 184 LPLLP 188 (390)
T ss_pred CCCCC
Confidence 77653
No 117
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.68 E-value=1.2e-07 Score=97.89 Aligned_cols=143 Identities=15% Similarity=0.005 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++..+.++++++.+...+.. + ....++.-.+.
T Consensus 47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~l~ 106 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT----G----------------PESLYLLRILV 106 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHH
Confidence 444566777788899999999999999999999888888777666553 1 33444555678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc---c-ccchhhHhHHHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF---G-GGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~---g-~~~~~~f~~~a~~~liaa~~ 439 (453)
|++.+.......++++|.+|.+ .+|+.+|+.+....+++.+.+.+.+.+.+.. + .+.+++|.+.++.+++.+++
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~ 184 (412)
T TIGR02332 107 GIAEAGFLPGILLYLTFWFPAY--FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM 184 (412)
T ss_pred HHHHhhHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 8888876655556789999975 5777799999999999998888877665321 1 12456888888888887777
Q ss_pred hheeccCCC
Q 012918 440 ATLKLPHLS 448 (453)
Q Consensus 440 v~~~vpet~ 448 (453)
..+++||++
T Consensus 185 ~~~~~~~~p 193 (412)
T TIGR02332 185 TWFWLDDSP 193 (412)
T ss_pred HhhccCCCc
Confidence 777888876
No 118
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.68 E-value=1.6e-07 Score=96.14 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=100.0
Q ss_pred HHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchh
Q 012918 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (453)
Q Consensus 289 ~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (453)
.-+.-++.=.+.|++++|+|.|+.++++..++++=..+.++.+ + ++.+.+.=.+.|+..+
T Consensus 268 ~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~----~----------------~~~i~~~klLH~~e~~ 327 (412)
T PF01306_consen 268 QVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT----N----------------PWVISLIKLLHALEFP 327 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT------S----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc----c----------------hHHHHHHHHHHHHHHH
Confidence 3444555667889999999999999998877777666666664 2 4556666677888888
Q ss_pred hhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 369 ITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 369 ~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
...--.+-.+++.+|++ -.++...+ .+++..+++.+.+...|.+-+.+|.. .+|++-|++.++..+...+.+++.
T Consensus 328 l~lva~fkYI~~~fd~r--lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~--~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 328 LLLVAAFKYITAHFDKR--LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ--HTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHS-GG--GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHhCCHh--HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH--HHHHHHHHHHHHHHHHheeeecCC
Confidence 87777778888888864 55555555 47889999999999999999999854 378777777777777777777766
Q ss_pred CC
Q 012918 448 SS 449 (453)
Q Consensus 448 ~g 449 (453)
|-
T Consensus 404 ~~ 405 (412)
T PF01306_consen 404 KK 405 (412)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 119
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.67 E-value=1e-07 Score=95.42 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++..+.++.+++.+...+.. + ....++...+.
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~ 93 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST----S----------------LWVMAALWALN 93 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHH
Confidence 455567778888899999999999999999999888887776655553 1 34455566678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHh-hccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVS-LGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s-~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|++.+.......++++|..|++ .+|..+|+.+....+++++.+ ...+.+.+..| ....|.+.+++.++.+++..+
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 94 GIFQGMGWPPCGRTVTKWFSRS--ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS--WHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HhhccccCCchHHHHHHhcCHh--hheeeEeehhccchhHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhe
Confidence 8888887778788999999975 567779999999999998888 34444444443 234688888888777777777
Q ss_pred eccCCC
Q 012918 443 KLPHLS 448 (453)
Q Consensus 443 ~vpet~ 448 (453)
++||++
T Consensus 170 ~~~~~~ 175 (379)
T TIGR00881 170 LLRDSP 175 (379)
T ss_pred eeCCCc
Confidence 777653
No 120
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.66 E-value=2.4e-07 Score=97.68 Aligned_cols=176 Identities=12% Similarity=0.116 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
.|+.++.++.+.++..++++.+..+.+.|+.+. ++- ++ ......+..+.+...+.+++.+++.||
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgl------------s~--~~a~~i~~~~~~~~~l~~ligG~LaDR 71 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKY------------DD--NHAYELFSAYCSLVYVTPILGGFLADK 71 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC------------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888877888776542 221 11 112234556777778889999999999
Q ss_pred c-CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC
Q 012918 307 I-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (453)
Q Consensus 307 ~-grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 385 (453)
+ ||||.+.+|.++++++.+....... + .....+..++.+++.|.......++++|.+|++
T Consensus 72 ilGrrr~iliG~il~~lg~lll~~~~~---~----------------~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 72 VLGNRMAVMLGALLMAIGHVVLGASEI---H----------------PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhc---c----------------hhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 9 9999999998888776653332110 0 001111222233344444444457899999976
Q ss_pred CCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 386 ~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
++.++...++......++-.+.+.+.|.+.+..|- ...|.++++..+++.+
T Consensus 133 ~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw--~~~F~iaaigm~l~li 183 (493)
T PRK15462 133 DPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW--AMGFGLAAVGMIAGLV 183 (493)
T ss_pred CccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHH
Confidence 44456669998888888999999999888776663 3468877765554443
No 121
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.65 E-value=8.8e-08 Score=98.37 Aligned_cols=142 Identities=16% Similarity=0.110 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+.++++++.+...+.. +.+..++.-.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~r~l~ 118 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN--------------------SFSLLLIGRACL 118 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC--------------------hHHHHHHHHHHH
Confidence 344456777788889999999999999999999999888766554432 144455556678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+....+..++++|++|++ ++|..+|+.+....++..+.+...+.+.+..| ..++|.+.++++++..++..+.
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~--~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l~~~~~ 194 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPR--TVPKALSVIFGAVSIALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIFWIIKS 194 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777778999999875 57778999999999999999998888877766 3457888888777766666566
Q ss_pred ccCCCC
Q 012918 444 LPHLSS 449 (453)
Q Consensus 444 vpet~g 449 (453)
+||+++
T Consensus 195 ~p~~~~ 200 (394)
T PRK10213 195 LPSLPG 200 (394)
T ss_pred CCCCCc
Confidence 888654
No 122
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.65 E-value=2.2e-07 Score=95.43 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+..+.+++.....+.. + ....++...+.
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 111 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ----S----------------IEQFTLLRFLQ 111 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 455667778888899999999999999999998887777665544432 1 33344455667
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+....+.++.+.|.+|++ .++..+++.+....++..+.+...+.+.+..| ..+.|++.+++++++.+...+.
T Consensus 112 G~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK15402 112 GIGLCFIGAVGYAAIQESFEEA--DAIKITALMANVALLAPLLGPLVGAALIHVLP--WRGMFVLFAALAALSFFGLWRA 187 (406)
T ss_pred HhHhhhHHHHHHHHHHHHhChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccHHHHHHHHHHHHHHHHHHHh
Confidence 7777776667778899999876 44455778777777777777777777666554 3457888888888887777677
Q ss_pred ccCCCC
Q 012918 444 LPHLSS 449 (453)
Q Consensus 444 vpet~g 449 (453)
+||++.
T Consensus 188 ~~~~~~ 193 (406)
T PRK15402 188 MPETAG 193 (406)
T ss_pred CCCCCc
Confidence 898864
No 123
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.64 E-value=8.1e-08 Score=96.35 Aligned_cols=142 Identities=19% Similarity=0.076 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+.+..+.++.+++.....+.. + ....++...+.
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~ 92 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG----A----------------YVSLYILRVLL 92 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc----C----------------HHHHHHHHHHH
Confidence 556677788889999999999999999999998888777665555443 1 44555666778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......++++|+.|++ .+|..+|+.+....+++++.+...+.+.+..| ....|.+.++++++.++...+.
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 93 GAAEAPFFPGIILIVASWFPAS--ERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred HHHHHhhhhHHHHHHHHhCCHH--HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHhhhe
Confidence 8888888777788999999875 56777999999999999999988887776665 3357888888888877776666
Q ss_pred ccCCCC
Q 012918 444 LPHLSS 449 (453)
Q Consensus 444 vpet~g 449 (453)
+||++.
T Consensus 169 ~~~~~~ 174 (399)
T TIGR00893 169 IPDPPQ 174 (399)
T ss_pred ecCCCC
Confidence 776543
No 124
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.63 E-value=4e-07 Score=93.05 Aligned_cols=185 Identities=11% Similarity=-0.043 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.+..+++..++..++.....-+.+.++.++ ++.++ . ..| +....+.+...+.+.+.+++.||+||
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~-~g~s~----------~---~~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~ 80 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVLPGYVHDQ-LGFSA----------F---LAG-LVISLQYLATLLSRPHAGRYADTLGP 80 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccH----------H---HHH-HHHHHHHHHHHHhchhhHhHHhccCC
Confidence 455677888887777665555666655431 22220 1 122 56667778889999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|+++..+.++.+++.....+.... ++. +.......++.-.+.|++.+.......+++.|..|++ ++
T Consensus 81 r~~l~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~--~r 146 (399)
T PRK05122 81 KKAVVFGLCGCALSGLLYLLAGLL--AAW----------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL--HT 146 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhh--hcc----------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh--hh
Confidence 999999988776654443333211 000 0012334455556788888887777667788888876 56
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
|+.+|+.+....++..+.+...+.+.+..|- ...+.+.++++++..++. +..|+
T Consensus 147 ~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~--~~~~~~~~~~~~~~~~~~-~~~~~ 200 (399)
T PRK05122 147 GRVISWNGIATYGALAIGAPLGVLLYHWGGL--AGLGLLIMLLALLGLLLA-RPRPA 200 (399)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHH-hcCCC
Confidence 6779998888888888888887777766652 345666666665555443 33444
No 125
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.63 E-value=1.8e-07 Score=95.71 Aligned_cols=141 Identities=16% Similarity=0.043 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+...+.+++.||+|||+++..+.++.+++.+...+.. + ....++...+.
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~ 113 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW----D----------------FPSLLVARLLT 113 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHH
Confidence 455567777888899999999999999999998877776655444432 1 34455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|.+|++ .+|+.+|+.+....++..+.+...+.+.+..+ ....|.+.+++.++..++..++
T Consensus 114 G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 189 (406)
T PRK11551 114 GVGLGGALPNLIALTSEAVGPR--LRGTAVSLMYCGVPFGGALASVIGVLAAGDAA--WRHIFYVGGVGPLLLVPLLMRW 189 (406)
T ss_pred HhhHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887777778999999875 57777999999999999888877666655544 2346888777777766666666
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||+.
T Consensus 190 l~~~~ 194 (406)
T PRK11551 190 LPESR 194 (406)
T ss_pred CCCCh
Confidence 78763
No 126
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.63 E-value=1.5e-07 Score=99.59 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
.|....|.+...+...+.+++.||+|||++++.+.++++++.+..++.. + ....++.-.+
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~----~----------------~~~li~~r~l 103 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP----T----------------ASWLIATRAL 103 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC----C----------------HHHHHHHHHH
Confidence 3666778888888889999999999999999999998888776655543 1 3444555567
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.|++.+.......+++.+.++++ +.+|+.+|+......++..+.+...|.+.+..| ..+.|++...++++..++..+
T Consensus 104 ~G~g~~~~~~~~~~~l~~~~~~~-~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 104 LAIGAAMIVPATLAGIRATFTEE-KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHH
Confidence 88888876655556676666432 367778999999999999999999998888765 456898888888888887777
Q ss_pred eccCCCCC
Q 012918 443 KLPHLSSN 450 (453)
Q Consensus 443 ~vpet~g~ 450 (453)
.+||.+.+
T Consensus 181 ~l~~~~~~ 188 (495)
T PRK14995 181 YVPRQAGR 188 (495)
T ss_pred hCCCCCCC
Confidence 88876543
No 127
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.63 E-value=2e-07 Score=98.87 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC
Q 012918 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (453)
Q Consensus 229 ~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g 308 (453)
+.++.+++...+.-+|++...+|.++|..+..+ ++ ......+-+.+++..++-++.+.+.|+..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--------------~~--~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--------------SS--NDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------Ch--hhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 456667778888889999999999998754222 22 23335566677888889999999999988
Q ss_pred cchhhHH--HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCC
Q 012918 309 SRLVWAI--SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (453)
Q Consensus 309 rr~l~~~--g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~ 386 (453)
.++.++. +.++.+++.+...+.+ .....+..+.++|++.|....++.-++.|+...+
T Consensus 362 ~~~~~~~~~~ll~~gl~~~~~p~~~--------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~- 420 (509)
T KOG2504|consen 362 IRALVLFLLTLLIAGLARLFLPFAT--------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE- 420 (509)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-
Confidence 6666654 4444433332222222 2456777888999999999998888999999876
Q ss_pred CCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
......|++.++..++.++.+.+.|.+.+..|.+. ..|.+.+++.++++++ ++++|
T Consensus 421 -~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~-~~f~~~g~~~~~s~~~-~~~~~ 476 (509)
T KOG2504|consen 421 -KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD-HAFYFCGLCFLLSAVL-LLILR 476 (509)
T ss_pred -hcchHHHHHHHHhHHHHHcCcccceeeeeccCCee-eehhhcChHHHHHHHH-HHHhH
Confidence 56777999999999999999999999999999765 4688888888887764 45555
No 128
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.63 E-value=3.7e-07 Score=90.98 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=146.6
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccch-hhHHHHHHHHHHHHH
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGN-LKAAFLVAVVFLTLC 131 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~-~r~~f~i~~i~~~i~ 131 (453)
---+++||+++|+.++|+|+++.+.....-++|-++|.++|+. +.. |+ .+.+.- +-....+..+....-
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy--la~-f~-------~~~g~~p~alP~~~v~i~a~~~ 205 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY--LAQ-FS-------SISGSYPFALPCLLVFILAAGD 205 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH--HHh-hH-------hhhccCchHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999986 222 11 011111 122233444444333
Q ss_pred hhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCC
Q 012918 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (453)
Q Consensus 132 ~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (453)
+...+++.||+ ++..+++ +|..+. ++... .+++
T Consensus 206 v~~~~~~lpET-L~~rk~~--~~~~~~---------~~~~~---------------------~~~~-------------- 238 (451)
T KOG2615|consen 206 VTFFPWFLPET-LPLRKRN--DEHSTL---------QEAAD---------------------DRLA-------------- 238 (451)
T ss_pred HHHHHHhCCcc-ccchhhc--ccccch---------hhhhh---------------------hhhh--------------
Confidence 66678889997 2111111 111100 00000 0000
Q ss_pred CchhhHHHHHHHhccCCH----HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHH
Q 012918 212 GPGAVLVNLLTSLRHLPP----AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (453)
Q Consensus 212 ~~~~~~~~~~~~~~~~P~----~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~ 287 (453)
..+....+-...++++|. ..+++...|.+..+-.++.+-|+..++.+.-|+-+| .++|--
T Consensus 239 ~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss---------~~~G~v------- 302 (451)
T KOG2615|consen 239 LLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSS---------MQQGKV------- 302 (451)
T ss_pred hcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCCh---------hhheee-------
Confidence 011111112223444442 334445556666666666666666665322333332 122221
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
++...+....+...+.++..|-+=-.-+.+.+.+.+....+....... ......+...+..++-
T Consensus 303 -l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~---------------~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 303 -LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR---------------TPVVLYLGSTLKSFST 366 (451)
T ss_pred -eehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc---------------cchhhhHHHHHHHHHH
Confidence 112233333444444444433321112222222222222222211000 0112222333344444
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHH
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALA 435 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~li 435 (453)
+...+--+.|+..+.|.+ .+|+.+|+.-+...++-.+.+++.|.+...........+.-++++...
T Consensus 367 A~~vt~Lt~Lv~~~~~~~--qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQS--QRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHhhHHHHHHHHhcCCcc--cchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 444444445888999987 688889999999999999999999987765433322233334444443
No 129
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.62 E-value=2e-07 Score=95.27 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.+..+++..|+..+++..+..+.+.+..| ++.++ .+.......+...++.+...+.+.+.+++.||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 83 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ--LGVTG---------HSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR 83 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hCCcc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence 34456777777777777666677776544 22211 01000111245556777888889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|+.+..+.+..++++....+.. + ....++...+.|++.+. .....+++.+..|++ .+
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~--~~ 140 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLAQ----N----------------IWQFLILRALLGLLGGF-VPNANALIATQVPRN--KS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----h----------------HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh--hh
Confidence 9999998877777665444332 1 22333344445554332 223335677777765 56
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
|..+|+.+....++.++.+...+.+.+..| ....|++.+++.+++.+...+++||.
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 777999999999999998888888776655 33578888888888777766667764
No 130
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.62 E-value=8e-07 Score=94.09 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchh-------hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLV-------WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l-------~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (453)
++.+..++.+-+.+++.||+++|+. ..+|.++.+++++.+.+......+ ..+.+ ..+..+...
T Consensus 317 ~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-~~~~~---------s~~~~i~~~ 386 (489)
T PRK10207 317 LNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-AQGLT---------SPWFIVLVY 386 (489)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCcc---------CHHHHHHHH
Confidence 4555666777778899999999874 677877777776544322110001 00001 133344566
Q ss_pred HHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccc
Q 012918 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG 412 (453)
Q Consensus 361 ~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g 412 (453)
.+.|++.+.....-.+++.+..|++ .+|..+|+.+....+++.+.+.+..
T Consensus 387 ~l~g~Ge~~~~~~g~~~~~~~aP~~--~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 387 LFQSLGELFISALGLAMIAALVPQH--LMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHhHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888999999976 7888899999999999988876654
No 131
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.7e-08 Score=102.70 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=70.8
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++--.+...++.+|+|..|.+||+++++++.+.+.+|..+||.+|... .+ ....|||.|.+.++
T Consensus 131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v--a~------------~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV--AS------------LTFWWRWAFRGSAV 196 (493)
T ss_pred hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee--cc------------CccceEEEEEeehH
Confidence 44455556777999999999999999999999999999999999999751 11 11359999999999
Q ss_pred HHHHHhhheeeEeecccCC
Q 012918 127 FLTLCALVTIYFADEVPLT 145 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~ 145 (453)
..+++.++..++++|+++.
T Consensus 197 l~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 197 LGVIVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHHHHhhccCcccc
Confidence 9999999999999997653
No 132
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.58 E-value=3.9e-07 Score=93.67 Aligned_cols=183 Identities=13% Similarity=0.026 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
.|+.+....++.++.-++......|.+++..+ ++.+ +. ..| +.+..+.+...+.+.+.+++.||
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~s------------~~-~~g-~~~~~~~~~~~i~~~~~g~l~dr 74 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA--LGLS------------PQ-QSA-SAFTLYGIAAAISAWISGVVAEI 74 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHH--hCCC------------HH-HhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777666655444456665532 2222 10 233 45567888889999999999999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCC
Q 012918 307 IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSG 386 (453)
Q Consensus 307 ~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~ 386 (453)
+|||+++..+.++++++++......... + +....++...+.|++.+.......+.+.+..|++
T Consensus 75 ~g~k~~l~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~- 137 (402)
T TIGR00897 75 IGPLKTMMIGLLLWCVGHAAFIVFGLGH-A---------------NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD- 137 (402)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccC-c---------------cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH-
Confidence 9999999998888877664432221100 1 1333444555678877765444445566777765
Q ss_pred CCcceeehhhHHHHHHHHH-HHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 387 GGQGLAIGVLNLAIVIPQM-IVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~-i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
++|+.+|+.+....+++. +.+...+.+.+..|... .++....+.+++.+...+++|
T Consensus 138 -~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 138 -NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMN--TLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH--HHHHHHHHHHHHHHHHHhccC
Confidence 578889999999988884 55666666766665321 344444333444443334333
No 133
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.58 E-value=6.4e-07 Score=94.46 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCc-----chhh--HHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGS-----RLVW--AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~gr-----r~l~--~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (453)
...++++..++..-+..++..|++| +... .+|.++.+++++.+.+......+. . ..+.+..+
T Consensus 317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~---~--------~~s~~~~i 385 (475)
T TIGR00924 317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG---G--------LTSPWFMV 385 (475)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---C--------ccCHHHHH
Confidence 3345555555554444443333333 3333 678888888877665542111000 0 01244455
Q ss_pred HHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHH
Q 012918 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (453)
Q Consensus 358 ~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa 437 (453)
....+.|++-......-.+++++..|++ .+|+++|+.++...+++.+.+.+........| ....|..-+++.++.+
T Consensus 386 ~~~~~~~~ge~~~~p~~~~~~~~~aP~~--~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 461 (475)
T TIGR00924 386 LIYLFQTLGELMISPLGLSWWTKIAPQR--LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQG--VTGVFGKIGLVTLLVG 461 (475)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHH
Confidence 6667788888888888888999999986 78999999999999999998877765544333 1234555555555444
Q ss_pred HHhhe
Q 012918 438 VVATL 442 (453)
Q Consensus 438 ~~v~~ 442 (453)
+...+
T Consensus 462 ~~~~~ 466 (475)
T TIGR00924 462 VVMAL 466 (475)
T ss_pred HHHHH
Confidence 43333
No 134
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.58 E-value=2.9e-07 Score=90.89 Aligned_cols=167 Identities=16% Similarity=0.081 Sum_probs=121.4
Q ss_pred HHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhh
Q 012918 234 VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVW 313 (453)
Q Consensus 234 l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~ 313 (453)
++...+...+++.....+.+.+..+ ++.+ . ....+....+.+...+.+.+.+++.||+|||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~--~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~ 67 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAED--LGLS------------A--SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVL 67 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHH--cCCC------------H--HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhh
Confidence 4556666677666666666665443 1211 1 1122455667788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceee
Q 012918 314 AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAI 393 (453)
Q Consensus 314 ~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~ 393 (453)
..+..+..++.....+.. + .....+...+.|++.+.....-.+++.|+.|++ .+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 125 (352)
T cd06174 68 LLGLLLFALGSLLLAFAS----S----------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK--ERGRAL 125 (352)
T ss_pred HHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCcc--chhhhh
Confidence 999888887776555442 1 344556667788888888887788999999985 567779
Q ss_pred hhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 394 GVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 394 gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
|+.+....+++.+.+...+.+.+..+ ....+.+.+++.+++.+..
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 126 GLFSAGFGLGALLGPLLGGLLAESLG--WRWLFLILAILGLLLALLL 170 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888876654 2346777777777766654
No 135
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.57 E-value=3.1e-07 Score=92.48 Aligned_cols=143 Identities=20% Similarity=0.101 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
+....+.+...+.+.+.+++.||+||||.++. +.+..+++.+...+.. + .+..++.-.+
T Consensus 37 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----------------~---~~~l~~~~~~ 96 (375)
T TIGR00899 37 LFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR-----------------N---YFLLLVLGVL 96 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc-----------------h---HHHHHHHHHH
Confidence 34456667778888889999999999987665 4444333333333322 1 2222222233
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.|...+.....-.+++.|+.|+++|.++...++.+....+++.+.+...+.+.+..| ..+.|.+.+++.++..++..+
T Consensus 97 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 97 LSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG--FTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333457778777654444444677777778888888888777766655 345799999888888877777
Q ss_pred eccCCC
Q 012918 443 KLPHLS 448 (453)
Q Consensus 443 ~vpet~ 448 (453)
++||.+
T Consensus 175 ~~~~~~ 180 (375)
T TIGR00899 175 FLPSYP 180 (375)
T ss_pred hCCCcc
Confidence 778753
No 136
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.56 E-value=2e-07 Score=94.98 Aligned_cols=139 Identities=14% Similarity=-0.015 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
....+.+...+..++.+++.||+|||++...+...+..+.. ..... + +....++.-.+.|
T Consensus 31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~----~---------------~~~~l~~~R~l~G 90 (368)
T TIGR00903 31 LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP----F---------------NYEWLLACQLLAA 90 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh----c---------------cHHHHHHHHHHHH
Confidence 34456677788899999999999999876654433332221 11110 0 1334455556678
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
++.+. .....+.++|++|++ ++|+.+|+.+....++..+.+...+.+.+..| .+..|.+.++++++.+++..+++
T Consensus 91 ~g~~~-~~~~~~~~~~~~~~~--~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 91 LGQPF-LLNAFAPAASQIREE--RRDLVISLLSFAMYLGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred hHhHH-HHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHc
Confidence 88775 455566779999975 68888999999999999999988888876655 45678887888888888777889
Q ss_pred cCCC
Q 012918 445 PHLS 448 (453)
Q Consensus 445 pet~ 448 (453)
||++
T Consensus 166 p~~p 169 (368)
T TIGR00903 166 PALP 169 (368)
T ss_pred CCCC
Confidence 9854
No 137
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.55 E-value=2.2e-07 Score=95.82 Aligned_cols=183 Identities=14% Similarity=0.051 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.++.+++.+++..++......+.+.+..+ ++++ . ...| +....+.+..++.+.+.+++.||+||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s------------~-~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~ 81 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQIQM--MTGS------------T-LQVG-LSVTLTGGAMFIGLMVGGVLADRYDR 81 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHCC------------H-HHHH-HHHHHHHHHHHHHHHhhHHHhhhcCC
Confidence 45667777888887766566666655432 1222 1 1222 55566777888889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|+++..+..+.++++....+......+ ..+..++...+.|++.+.....-.+++.|..|++ ++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~ 144 (417)
T PRK10489 82 KKLILLARGTCGLGFIGLALNAFLPEP---------------SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE--NL 144 (417)
T ss_pred ceEEEehHHHHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH--HH
Confidence 999998887777666544332211001 1233334445556665554444456788888875 56
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
++..|+.+....+++.+.+.+.+.+.+..|. .+.|.+.++..+++.+. .+.+||++
T Consensus 145 ~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~ 200 (417)
T PRK10489 145 MQAGAITMLTVRLGSVISPALGGLLIAAGGV--AWNYGLAAAGTFITLLP-LLRLPALP 200 (417)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH-HHhCCCCC
Confidence 7779999999999999999888887766552 35677777777766654 45567653
No 138
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.53 E-value=2.1e-07 Score=102.67 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+..++.+++.+++.||+|||+.++++.++.+++.++.++.. .....++.-.+.
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~--------------------s~~~llv~R~l~ 265 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ--------------------GYGFFLFCRLLS 265 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHH
Confidence 444556677888999999999999999999998887777665555443 133445566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc-----------ccchhhHhHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-----------GGNIPAFVLASLS 432 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g-----------~~~~~~f~~~a~~ 432 (453)
|++.+....+.+++++|.+|.+ .+|..+++++.+..++.++++.+...++...| ......|++.++.
T Consensus 266 G~g~g~~~p~~~~~isE~~p~~--~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp 343 (742)
T TIGR01299 266 GFGIGGAIPIVFSYFAEFLAQE--KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP 343 (742)
T ss_pred HHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH
Confidence 8999888889999999999976 67888999999988888887765544432221 0123456666666
Q ss_pred HHHHHHHhheeccCC
Q 012918 433 ALAGGVVATLKLPHL 447 (453)
Q Consensus 433 ~liaa~~v~~~vpet 447 (453)
++++. +..+++||+
T Consensus 344 ~ll~l-l~~~~lPES 357 (742)
T TIGR01299 344 CVFAI-GALTFMPES 357 (742)
T ss_pred HHHHH-HHHHHcCCC
Confidence 55554 456789998
No 139
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.52 E-value=3.1e-07 Score=92.94 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+.+..+.++.+++.....+.. + ....++...+.
T Consensus 30 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~~~l~ 89 (377)
T PRK11102 30 MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ----T----------------IDQLIYMRFLH 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 445567777888899999999999999999998888877766554432 1 33344555667
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|..|++ .+|+.+|+.+....++..+.+...+.+.+..| ....|.+.++++++..++..+.
T Consensus 90 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 90 GLAAAAASVVINALMRDMFPKE--EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877666678899998875 67788999999999999998888887766555 2357888888888887777777
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||++
T Consensus 166 ~~~~~ 170 (377)
T PRK11102 166 IPETL 170 (377)
T ss_pred CCccC
Confidence 88764
No 140
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.52 E-value=6e-07 Score=91.72 Aligned_cols=141 Identities=14% Similarity=0.188 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+..+.+...+.+.+.+++.||+|||+.+.++.+..+++.+...+.. + ....++...+.
T Consensus 47 ~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~ 106 (394)
T PRK11652 47 AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH----S----------------LTVLIAASAIQ 106 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc----c----------------HHHHHHHHHHH
Confidence 455667778888899999999999999999998877776665443332 1 33444555667
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|..+.+ +++..++..+....+++.+.+...+.+.+..| ....|.+.+++.++.++...++
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 107 GLGTGVGGVMARTLPRDLYEGT--QLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HhhhhHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 8877766666667788887765 56677888888888888888888777766555 3457888777777666666667
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||++
T Consensus 183 ~~~~~ 187 (394)
T PRK11652 183 MPETR 187 (394)
T ss_pred CCccC
Confidence 88864
No 141
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.51 E-value=8.1e-07 Score=93.93 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 288 LNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
+..+...+.+++.+++.||+|||+++.++.++++++.+.+++...... . +.+.+...+++=.+.|++.
T Consensus 65 ~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~------~------g~~a~~~l~~~R~l~G~g~ 132 (490)
T PRK10642 65 VPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT------I------GIWAPILLLLCKMAQGFSV 132 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH------H------HHHHHHHHHHHHHHHHhHh
Confidence 344556778899999999999999999999999988877776642100 0 0011122444556789999
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc------cccchhhHhHHHHHHHHHHHHhh
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF------GGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~------g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
|.......++++|..|++ .+|...++.+....++.++.+.....+...+ ..+.+..|+++++.++++.+ ..
T Consensus 133 g~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~-~~ 209 (490)
T PRK10642 133 GGEYTGASIFVAEYSPDR--KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLY-LR 209 (490)
T ss_pred HhhHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHH-HH
Confidence 888888888999999986 5666788877766666665554333221111 11245678887776665443 45
Q ss_pred eeccCC
Q 012918 442 LKLPHL 447 (453)
Q Consensus 442 ~~vpet 447 (453)
+.+||+
T Consensus 210 ~~~~es 215 (490)
T PRK10642 210 HALEET 215 (490)
T ss_pred HcCCCC
Confidence 678886
No 142
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.51 E-value=5.7e-07 Score=94.20 Aligned_cols=152 Identities=14% Similarity=0.027 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+..++.+++.+++.||+|||++++++.++++++.+..++........ ..+++......++.=.+.
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI--------GPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc--------cccchhHHHHHHHHHHHH
Confidence 556677888899999999999999999999999888887776555432100000 000111233444555778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce--------ecccccchhhHhHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD--------ALFGGGNIPAFVLASLSALA 435 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~--------~~~g~~~~~~f~~~a~~~li 435 (453)
|++.|....+..++++|+.|++ .+|+.+|+.+....+++++.+...+.+. +..| .+++|++.++++++
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~--~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g--Wr~~f~~~~~~~~~ 206 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAH--IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG--WRYMFASEAIPALL 206 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC--hHHHHHHHHHHHHH
Confidence 9999999999999999999976 5777899999999999988766543332 1222 34578888888877
Q ss_pred HHHHhheeccCCC
Q 012918 436 GGVVATLKLPHLS 448 (453)
Q Consensus 436 aa~~v~~~vpet~ 448 (453)
..+ ..+++||+.
T Consensus 207 ~~~-~~~~l~~s~ 218 (479)
T PRK10077 207 FLM-LLYFVPETP 218 (479)
T ss_pred HHH-HHHcCCCCc
Confidence 655 456789874
No 143
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.49 E-value=9.2e-07 Score=91.14 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.+.+.+++.||+|||+++..+.++.+++.+...+.. + ....++.-.+.
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~r~l~ 116 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS----G----------------VIMLTLSRFIV 116 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHH
Confidence 344556677788899999999999999999999988888776655554 1 33445556678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|..|++ .+|+.+|+.+....++.++.+.+.+.+.+..| ..+.|.+..+..++ .++....
T Consensus 117 G~g~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~--w~~~f~i~~~~~~~-~~~~~~~ 191 (426)
T PRK12307 117 GMGMAGEYACASTYAVESWPKH--LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG--WRAAFFVGLLPVLL-VIYIRAR 191 (426)
T ss_pred HHHHhhHHHHHHHHHHHhCCHh--HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC--HHHHHHHHHHHHHH-HHHHHHH
Confidence 8888887777888999999976 56777999999999999998887777766554 33466665443333 3333344
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
.||++
T Consensus 192 ~p~~~ 196 (426)
T PRK12307 192 APESK 196 (426)
T ss_pred CCCCh
Confidence 67763
No 144
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.49 E-value=5.3e-07 Score=93.79 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+.++.+++.+...+..... + ......+...+.
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~l~~~~~l~ 128 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT-S---------------SIAIMFVLLFLN 128 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccccc-c---------------hHHHHHHHHHHH
Confidence 455567778888899999999999999999998888877665544432110 0 122333344456
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.........+.|++|++ .+|+.+|+.++...++..+.+...+.+.+...+ ...+|++.++++++.++...++
T Consensus 129 g~~~g~~~~~~~~~i~~~~~~~--~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 129 GWFQGMGWPPCGRTMVHWWSQS--ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHHhhcchHHHHHHHHHhcCcc--cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655554556788999876 577779999999988888877666554433221 3457888888888877777777
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
+||+
T Consensus 206 ~~~~ 209 (438)
T TIGR00712 206 MRDT 209 (438)
T ss_pred ccCC
Confidence 7765
No 145
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.49 E-value=7.6e-07 Score=89.45 Aligned_cols=148 Identities=10% Similarity=0.033 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcch
Q 012918 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (453)
Q Consensus 232 ~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~ 311 (453)
+..|+..+....+|..+..+.+.++.+ .++-++ ....+....+.+...+.+++.+++.||+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~--------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 68 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKD-DLGLST--------------AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY 68 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHH-HhCCCH--------------HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 345666666666666566666654433 233221 12225556677888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcce
Q 012918 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGL 391 (453)
Q Consensus 312 l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~ 391 (453)
.+..+.++++++.+...+... + ....++...+.|++.+.. ..-.++++|..|++ .+|.
T Consensus 69 ~~~~~~~~~~i~~~~~~~~~~---~----------------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~--~r~~ 126 (366)
T TIGR00886 69 TTTLSLLLLAIPCLWAGLAVQ---S----------------YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK--IQGT 126 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---h----------------HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh--hhhH
Confidence 999998888887765555430 0 222333444556654433 33457889999876 5677
Q ss_pred eehhhHHHHHHHHHHHhhcccccee
Q 012918 392 AIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 392 ~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
.+++.+....++..+.+.+.+.+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7888887666777666666655543
No 146
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.48 E-value=1e-06 Score=89.82 Aligned_cols=152 Identities=13% Similarity=0.035 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhc
Q 012918 228 PPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWI 307 (453)
Q Consensus 228 P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~ 307 (453)
+|+++.++..+++.+++...+..+.+.+..| ++.+ +. ..| +....+.+...+.+.+.+++.||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~s-----------~~--~~G-~~~s~~~l~~~~~~~~~g~l~dr~ 68 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--EHLP-----------TW--QVG-VVSSSYFTGNLVGTLLAGYVIKRI 68 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--cCCC-----------HH--HHH-HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567778888988888877777777776554 2322 11 123 556667788888899999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCC
Q 012918 308 GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGG 387 (453)
Q Consensus 308 grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r 387 (453)
|||+.+..+.++.+++.....+.. + ....++...+.|++.+....+-.+.+.+..|++
T Consensus 69 g~k~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-- 126 (381)
T PRK03633 69 GFNRSYYLASLIFAAGCAGLGLMV----G----------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR-- 126 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--
Confidence 999999999888887766555443 1 334445566788887765433334555666654
Q ss_pred CcceeehhhHHHHHHHHHHHhhccccceec
Q 012918 388 GQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (453)
Q Consensus 388 ~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~ 417 (453)
++|..+|+.+....+++.+.+...+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 127 NRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 567789999999999999998888877654
No 147
>PRK12382 putative transporter; Provisional
Probab=98.48 E-value=1.7e-06 Score=88.22 Aligned_cols=147 Identities=8% Similarity=-0.041 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+..+.+...+.+.+.+++.||+|||+++..+.+..+++.+........... ...+....++.-.+.
T Consensus 55 ~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~r~l~ 122 (392)
T PRK12382 55 IAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS------------APFKFALLVVGRLIL 122 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc------------hhHHHHHHHHHHHHH
Confidence 45556778888899999999999999999999877766554332222110000 000234445555678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|..|++ ++|+.+|..+....++..+.+...+.+.+..| ....+.+..+..++..++ ...
T Consensus 123 G~~~~~~~~~~~~~~~~~~~~~--~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~-~~~ 197 (392)
T PRK12382 123 GFGESQLLTGALTWGLGLVGPK--HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG--FAALALTTMVLPLLAWAF-NGT 197 (392)
T ss_pred HHHHHHHHHHHHHHHHhhCCcc--ccchhhhHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHH-HHh
Confidence 8888876666667788898875 56777999988888888888888777766555 223444444444443332 234
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
.||.
T Consensus 198 ~~~~ 201 (392)
T PRK12382 198 VRKV 201 (392)
T ss_pred ccCC
Confidence 5553
No 148
>PRK11043 putative transporter; Provisional
Probab=98.47 E-value=1.3e-06 Score=89.48 Aligned_cols=139 Identities=11% Similarity=-0.001 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.+++.+++.||+|||+++..+.++.+++.+...+.. + ....++...+.
T Consensus 45 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 104 (401)
T PRK11043 45 ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE----S----------------AAQLLVLRFVQ 104 (401)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHH
Confidence 455567777888899999999999999999998877776665544432 1 23334444556
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|.+|++ ..+...+..+....++..+.+...+.+.+..| ....|.+.++++++..+...++
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRYPAQ--KANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HhhhHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHc
Confidence 6666654444456888999875 45556777777777888888888887776665 3357888888887776655444
Q ss_pred ccC
Q 012918 444 LPH 446 (453)
Q Consensus 444 vpe 446 (453)
.|+
T Consensus 181 ~~~ 183 (401)
T PRK11043 181 KPS 183 (401)
T ss_pred CCC
Confidence 443
No 149
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.47 E-value=8.8e-07 Score=91.44 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++.++.++++++.....+.... ......++.-.+.
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~r~l~ 137 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-----------------LSVEMLIVGRVLL 137 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc-----------------cchHHHHHHHHHH
Confidence 55567778889999999999999999999999888887766555443210 0123455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcc---ccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA---GPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~---g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
|++.+.......++++|..|++ .+|..+|+.+....+++++.+... +.+.+..| ..+.|.+.++..++..+ .
T Consensus 138 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--w~~~f~~~~~~~~~~~~-~ 212 (481)
T TIGR00879 138 GIGVGIASALVPMYLSEIAPKA--LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG--WRIPLGLQLIPAGLLFL-G 212 (481)
T ss_pred HhhhhHHHhHHHHHHHccCChh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHH-H
Confidence 9999888888889999999976 567779999999999999988877 44433333 34578876666665544 4
Q ss_pred heeccCCC
Q 012918 441 TLKLPHLS 448 (453)
Q Consensus 441 ~~~vpet~ 448 (453)
.+++||+.
T Consensus 213 ~~~l~~~~ 220 (481)
T TIGR00879 213 LFFLPESP 220 (481)
T ss_pred HhcCCCCh
Confidence 56678863
No 150
>TIGR00898 2A0119 cation transport protein.
Probab=98.46 E-value=5.3e-07 Score=95.27 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.+++.+++.||+|||++++++.++.+++.+...+.. + ....++.-.+.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~----~----------------~~~~~~~r~l~ 190 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP----N----------------YTVFLVFRLLV 190 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc----c----------------HHHHHHHHHHH
Confidence 555667778888899999999999999999998888877666555443 1 44455666788
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+....+.+++++|++|.+ .+|..+++.+....++.++.+.+.+.+.+ ..+.|++.++.+++..+.. ++
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~~~~~-~~ 262 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKK--QRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLFFLLS-WF 262 (505)
T ss_pred HhhccchHHHHHHHhheecChh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999998999999999999986 45666888888888888777766544432 3457888888877776654 67
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
+||+
T Consensus 263 ~~es 266 (505)
T TIGR00898 263 VPES 266 (505)
T ss_pred cCCC
Confidence 8886
No 151
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.45 E-value=7.8e-07 Score=89.00 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.+.+.+++.||+|||+.+..+.++.+++.....+.. + ....++...+.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~ 101 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD----S----------------LAALYLTYGLA 101 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH----H----------------HHHHHHHHHHH
Confidence 455677788889999999999999999999999888888776655554 1 33344455578
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.........+.|++|+ ++|+.+++.+....++.++.+...+.+.+..| ..+.|.+.++++++.++...++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFPD---KRGLASGIIIGGYGLGSFILSPLITSVINLEG--VPAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcCc---ccHHHHHHHHHhcchhHhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 888887666666677888874 46778999888888887766555555544333 3457888888888777666555
Q ss_pred cc
Q 012918 444 LP 445 (453)
Q Consensus 444 vp 445 (453)
+|
T Consensus 177 ~~ 178 (377)
T TIGR00890 177 IG 178 (377)
T ss_pred ee
Confidence 54
No 152
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.45 E-value=1.2e-06 Score=101.89 Aligned_cols=115 Identities=14% Similarity=-0.002 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.+.+.+++.||+|||++++.+.++..+..+++.+.... + ..+.+++...+.
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--~---------------~~~~l~~~r~l~ 113 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--G---------------WFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--c---------------cHHHHHHHHHHH
Confidence 55566777888899999999999999999998876655555444333211 1 144555666778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceec
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL 417 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~ 417 (453)
|++.+.....-+++++|+.|.+ .+|..+|+.+....++.++.+.+.+.+...
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKE--NLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcc--cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888788999999986 567779999999999999999888877655
No 153
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.44 E-value=1.7e-06 Score=88.47 Aligned_cols=185 Identities=14% Similarity=0.048 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC
Q 012918 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (453)
Q Consensus 229 ~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g 308 (453)
|.++.++...|+.+.++..+.-+.+.|+.+ .++.++ - ..| +...++.+...+.+.+.+++.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~---------~----~~g-~~~~~~~l~~~i~~~~~G~l~Dr~g 66 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-VNGLSK---------T----DTG-IVFSCISLFSILFQPLFGLISDKLG 66 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777888888887777788877654 233221 1 123 5566788899999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCC
Q 012918 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (453)
Q Consensus 309 rr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~ 388 (453)
||+.+..+....+++.......... +. . ........++...+.|+.++..... ..++.++..|+
T Consensus 67 rr~~~~~~~~~~~~~~~~~~~~~~~--~~----~------~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~ 130 (396)
T TIGR00882 67 LKKHLLWIISGLLVLFAPFFIYVFG--PL----L------QSNILVGAIVGGLYLGFVFSAGAGA----IEAYIEKVSRN 130 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh--hH----H------HHHHHHHHHHHHHHHHHHhccchhh----HHHHHHHhhhh
Confidence 9999988766655433322111100 00 0 0001112222234455555554333 33344332234
Q ss_pred cceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 389 ~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
.+.++|.......++..+.+...|.+.+ .| ....|++.+++.++.++++....||+
T Consensus 131 ~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 131 SNFEYGKARMFGCVGWALCASIAGILFS-ID--PQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred cccccchhhhhcccHHHHHHHHHhhhhc-cC--chHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5667778778888888888888776654 34 23578888888888777665555553
No 154
>PRK09952 shikimate transporter; Provisional
Probab=98.42 E-value=1.6e-06 Score=90.41 Aligned_cols=143 Identities=7% Similarity=0.063 Sum_probs=94.1
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
+...+.+++.+++.||+|||+.+.++.++++++.+.+++....... .++.....+++=.+.|++.|..
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l~G~~~g~~ 142 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTI------------GWWAPVLLVTLRAIQGFAVGGE 142 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHHHHhhhccc
Confidence 4456778889999999999999999999998877776666421000 0011223344446688888876
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc------ccchhhHhHHHHHHHHHHHHhheec
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG------GGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g------~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
...-.++++|..|++ .+|..++..+....++.++.+.....+....+ .+.+..|.+.++..+++ +.....+
T Consensus 143 ~~~~~~~~~e~~p~~--~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~ 219 (438)
T PRK09952 143 WGGAALLAVESAPKN--KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGM 219 (438)
T ss_pred HHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhC
Confidence 655567999999986 46777888888888887777655444332211 11345788887776654 3344567
Q ss_pred cCCC
Q 012918 445 PHLS 448 (453)
Q Consensus 445 pet~ 448 (453)
||++
T Consensus 220 ~es~ 223 (438)
T PRK09952 220 EESA 223 (438)
T ss_pred CCCh
Confidence 8764
No 155
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.42 E-value=6e-06 Score=85.16 Aligned_cols=185 Identities=17% Similarity=0.120 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcc
Q 012918 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (453)
Q Consensus 231 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr 310 (453)
+....+..++...+...+..|.+.|+.|.. + +... ..| ..+.+..+.-+..=+..+++.+|+|.|
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g--g-----------~~~~-~~g-~~~~l~~~aEi~~f~~~~~~~~r~g~~ 273 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELG--G-----------YSGS-TIG-ILWALGVVAEIPFFFFSGRFLKRFGIK 273 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c-----------chhh-HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 444555666667777767777777755421 0 1111 112 111122233344456779999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHH-HHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS-LVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 311 ~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
+++.++.+..++=...+.... + |++..+.. ++-..+.|++++.+.......+.+..|++ .+
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~~----~------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~--~~ 335 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYFS----D------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE--LR 335 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----C------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc--ch
Confidence 999998777665444444432 1 21112221 12235699999998888778899999986 45
Q ss_pred ceeehhhHHH-HHHHHHHHhhccccceecccccc----hhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 390 GLAIGVLNLA-IVIPQMIVSLGAGPWDALFGGGN----IPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 390 G~~~gi~n~~-~~l~q~i~s~~~g~l~~~~g~~~----~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
++..|+++.. ..++..+.+++.|.+.+..|... ...+.+.+++.++..+....+.+|+.
T Consensus 336 at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 336 ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 5668888765 57899999999999999887542 12345555555555555445555554
No 156
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.42 E-value=1.9e-06 Score=89.53 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=97.1
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
+...+.+++.+++.||+|||+.+..+.++++++.+.+++...... + ........+++=.+.|++.|..
T Consensus 74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~l~~~R~l~G~g~g~~ 141 (432)
T PRK10406 74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYET------I------GTWAPALLLLARLFQGLSVGGE 141 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchh------H------HHHHHHHHHHHHHHHHhhhhhh
Confidence 344578899999999999999999999999887776665531100 0 0011233444556788888887
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc------cccchhhHhHHHHHHHHHHHHhheec
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF------GGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~------g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
.....++++|..|++ ++|...++.+.....+.++.+...+.+.... ..+.+..|.+.++.+++..+ ..+.+
T Consensus 142 ~~~~~~~i~e~~p~~--~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~ 218 (432)
T PRK10406 142 YGTSATYMSEVAVEG--RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQL 218 (432)
T ss_pred HhhHHHHHHHhCCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcC
Confidence 888889999999976 5677788887777777777665543332111 11235678888888877654 45668
Q ss_pred cCCC
Q 012918 445 PHLS 448 (453)
Q Consensus 445 pet~ 448 (453)
||++
T Consensus 219 ~e~~ 222 (432)
T PRK10406 219 DETS 222 (432)
T ss_pred CCCc
Confidence 8864
No 157
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=6.6e-07 Score=89.70 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 280 REGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 280 ~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
+.| +-+..++++..+.+-+.|.++||+|+|..+++|.+++..+-+..++-. ...+.++.
T Consensus 107 ~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--------------------sy~~l~vA 165 (464)
T KOG3764|consen 107 QIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--------------------SYPMLFVA 165 (464)
T ss_pred chh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--------------------hhHHHHHH
Confidence 444 455567799999999999999999999999999888876555444432 13344555
Q ss_pred HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
=++-|++.|...+.-.+++++.+|++ ..+|..||+.-.++.++-++.+.+.|.+-+..|-+ ..|.+-++++++.+.+
T Consensus 166 R~LQgvgsA~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~--aPFlVL~~v~Lld~~L 242 (464)
T KOG3764|consen 166 RSLQGVGSAFADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS--APFLVLAIVLLLDGAL 242 (464)
T ss_pred HHHhhhhHHHHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcCCc--CcHHHHHHHHHHHHHH
Confidence 58899999999999999999999987 46788899999999999999999999998888854 4799999999998888
Q ss_pred hheeccCCCC
Q 012918 440 ATLKLPHLSS 449 (453)
Q Consensus 440 v~~~vpet~g 449 (453)
.++.++.||-
T Consensus 243 ~l~vi~p~~~ 252 (464)
T KOG3764|consen 243 QLLVIEPTEM 252 (464)
T ss_pred HHheeCcccc
Confidence 8888777654
No 158
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.41 E-value=1.3e-06 Score=91.97 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+..++.+++.||+|||+++.++.++.+++.+...+.. + ....++...+.
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~l~ 118 (496)
T PRK03893 59 SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP----G----------------YWTLFIARLVI 118 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----H----------------HHHHHHHHHHH
Confidence 445556677788889999999999999999999888877766555443 1 33445566678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.|++|.+ .+|..+|+.+....+++++.+...+.+.+..| ..+.|.+..+..++ +++....
T Consensus 119 G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~~~~~~-~~~~~~~ 193 (496)
T PRK03893 119 GMGMAGEYGSSATYVIESWPKH--LRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGILPIIF-ALWLRKN 193 (496)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHH-HHHHHHh
Confidence 8888877777778899999976 56777999999999999999988888776554 33466665444433 3334455
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
+||++
T Consensus 194 ~p~~~ 198 (496)
T PRK03893 194 LPEAE 198 (496)
T ss_pred CCCch
Confidence 77653
No 159
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.39 E-value=1.9e-06 Score=90.46 Aligned_cols=145 Identities=16% Similarity=0.073 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+..++.+++.||+|||+++.++.++.+++...+++......+ +....+++-.+.
T Consensus 68 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~r~l~ 132 (467)
T PRK09556 68 MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV---------------SLGLMIALWALS 132 (467)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc---------------hHHHHHHHHHHH
Confidence 44456777888889999999999999999998887777766555443110001 244455555677
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc-cccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF-GGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~-g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|++.+.......++++|.+|++ ++|+.+|+.+....++..+.+.....+.... ++.....|.+.++..++.++...+
T Consensus 133 G~~~~~~~~~~~~~i~~~~~~~--~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 133 GFFQSTGGPCSYSTITRWTPRR--KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHHHhccchHHHHHHHHHcCcc--ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 8887777777778999999976 6788899999988899888877665444432 212234577767766665554444
Q ss_pred ecc
Q 012918 443 KLP 445 (453)
Q Consensus 443 ~vp 445 (453)
++|
T Consensus 211 ~~~ 213 (467)
T PRK09556 211 YGS 213 (467)
T ss_pred hCC
Confidence 433
No 160
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.39 E-value=2.2e-06 Score=88.48 Aligned_cols=184 Identities=15% Similarity=0.068 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
.++.+.+..|+.+.++..+.-|.+.|+.++ ++-++ . ..| +....+.+...+.+.+.+++.||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~---------~----~~g-~~~s~~~l~~~i~~~~~G~l~Dr~g~ 75 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDI-NGLSG---------T----DTG-IIFSANSLFALLFQPLYGLISDKLGL 75 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455566677777777766666777665441 22221 1 122 45567788899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCc
Q 012918 310 RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQ 389 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~ 389 (453)
|+.++++..+.+++.......... .. . ........++.-...|..+.. ....+.++.++..|.+
T Consensus 76 r~~~~~~~~~~~~~~~~~~~~~~~--~~-----~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 139 (420)
T PRK09528 76 KKHLLWIISGLLVLFGPFFIYVFA--PL-----L-----QYNILLGAIVGGIYLGFGFLA----GAGAIEAYIERVSRRS 139 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HH-----H-----HHHHHHHHHHHHHHhhhhhcc----chhhhhhHHHHHHhhc
Confidence 999888666555433221111100 00 0 000011111111122332222 2223334433323567
Q ss_pred ceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 390 GLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 390 G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
|..+|..+....+++.+.+...|.+.+. + ....|++.++.+++..+..++..||.
T Consensus 140 g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 140 GFEYGRARMWGSLGWALCAFIAGILFNI-N--PQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred cccchhhHHhhhHHHHHHHHHHHHHHhc-C--chHhHHHHHHHHHHHHHHHhcccccc
Confidence 8889999999999999999888877653 3 23578888888887777665555443
No 161
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.39 E-value=3.7e-06 Score=88.70 Aligned_cols=136 Identities=16% Similarity=0.076 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
...+.+...+..++.+++.||+|||++...+.++.+++++.+.+.. + ....++...+.|+
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----s----------------~~~l~~~r~l~G~ 136 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS----S----------------ATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHHH
Confidence 4455566677789999999999999999988888777666555543 1 2233334455666
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc---c----ccchhhHhHHHHHHHHHHH
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF---G----GGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~---g----~~~~~~f~~~a~~~liaa~ 438 (453)
+.+... .....++|++|.+ .+|..+|+.+....++-.+.+.+++.+...+ + .+.+++|.+.++++++.++
T Consensus 137 ~~~~~~-~~~~~i~~~~~~~--~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 137 SLATFV-SCQYWMSTMFNGK--IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred HHHhhH-HHHHHHHHhcChh--heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence 666432 2344678999875 5777788887655555555544443332211 0 1235678888888887776
Q ss_pred Hhheec
Q 012918 439 VATLKL 444 (453)
Q Consensus 439 ~v~~~v 444 (453)
+..++.
T Consensus 214 ~~~~~~ 219 (476)
T PLN00028 214 LVLTLG 219 (476)
T ss_pred HHHHHc
Confidence 655443
No 162
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.38 E-value=9.4e-07 Score=93.70 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++.++.+++.++....++.... . +.......++.-.+.
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~--~------------~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS--S------------PKSVMATLCFWRFWL 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc--c------------cchHHHHHHHHHHHH
Confidence 45556667788899999999999999999999888887766554443210 0 111234555666778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc---------------------cccc
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF---------------------GGGN 422 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~---------------------g~~~ 422 (453)
|++.+........+++|..|.+ .+|..+++++.+..+++++.+...+.+.... ....
T Consensus 126 G~~~g~~~~~~~~~~~e~~p~~--~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 203 (502)
T TIGR00887 126 GVGIGGDYPLSAIITSEFATKK--WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMW 203 (502)
T ss_pred HHHHhhhhHHHHHHHHHhcChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccH
Confidence 9999988888889999999987 5677799999999999988776655432211 1123
Q ss_pred hhhHhHHHHHHHHHHHHhheeccCC
Q 012918 423 IPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 423 ~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+..|.+.++.+++..++ .+++||+
T Consensus 204 R~~~~~~~ip~~i~~~~-~~~lpES 227 (502)
T TIGR00887 204 RILIGFGAVPALLALYF-RLTIPET 227 (502)
T ss_pred HHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 45677777777765554 4678997
No 163
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.37 E-value=1.7e-06 Score=90.95 Aligned_cols=197 Identities=12% Similarity=0.039 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhh----h
Q 012918 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCR----W 306 (453)
Q Consensus 231 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d----~ 306 (453)
+..+|.+.+--.++|....-|.+.|+.+ ++-+ . ....+...+..+..++...+.+.++| |
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~--lg~~------------~--~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr 69 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE--LGIP------------H--AWASIIWLCGPLSGLLVQPLVGYLSDRCTSR 69 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC------------H--HHHHHHHHHHHHHHHHHHhHeeehhcCCCCC
Confidence 4445555555566666666666666532 2211 1 12224555666778888888999999 5
Q ss_pred cCcchhhHHH-HHHHHHHHHHHHHHhhhhh--ccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhccccc
Q 012918 307 IGSRLVWAIS-NFIVFACMATTAIISVISV--REYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTA 383 (453)
Q Consensus 307 ~grr~l~~~g-~~~~~i~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p 383 (453)
+||||.++.+ .+..++++..+++...... .+..... ......+..++.+.+..++......--.++++|..|
T Consensus 70 ~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~-----~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p 144 (477)
T TIGR01301 70 FGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKK-----TKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTG 144 (477)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999874 5555555555544321100 0000000 000111222333334455666555555679999999
Q ss_pred CCCCCcceeehhhHHHHHHHHHHHhhccccce--ecc-----------cccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 384 DSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD--ALF-----------GGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 384 ~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~--~~~-----------g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
+++|+.+...+..+.+..+++++.....+... +.+ +.+....|.+++++.+++.+.+++.+||..
T Consensus 145 ~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 145 GDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 88777788899999999999999888766431 111 112245799999999999999989999863
No 164
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.36 E-value=2.1e-06 Score=89.70 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||++++.+.++.+++.+...+..... + +....+++..+.
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~-~---------------~~~~~~~~~~l~ 130 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-S---------------SIAVMFVLLFLC 130 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc-c---------------cHHHHHHHHHHH
Confidence 445567778888899999999999999999999888887776555542110 0 123334444556
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccc-cceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG-PWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g-~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|++.+.....--+++.|++|++ .+|+.+|+.+....++..+.+...+ .+.. .+ +....|++.+++.++.+++..+
T Consensus 131 gi~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~-gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 131 GWFQGMGWPPCGRTMVHWWSQK--ERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-FN-DWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHhccchHHHHHHHHhCChH--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654332235678888875 5777799988887777544333221 1211 11 2345788877777776666666
Q ss_pred eccCC
Q 012918 443 KLPHL 447 (453)
Q Consensus 443 ~vpet 447 (453)
++||+
T Consensus 207 ~~~~~ 211 (452)
T PRK11273 207 MMRDT 211 (452)
T ss_pred HccCC
Confidence 77765
No 165
>PRK03699 putative transporter; Provisional
Probab=98.35 E-value=5.4e-06 Score=84.93 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++..+.++.+++.+.+.+.. +....++...+.
T Consensus 46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~--------------------~~~~~~~~~~l~ 105 (394)
T PRK03699 46 NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH--------------------SLALFSIAMFVL 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc--------------------hHHHHHHHHHHH
Confidence 344556677788899999999999999999988887777666555432 133444555677
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceec-ccccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL-FGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~-~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|++.+.......+++.|.+|++ .+|..++..+....++..+.+...+.+... .| ....|.+.+++.++..++..+
T Consensus 106 G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g--w~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK03699 106 GVVSGITMSIGTFLITHVYEGK--QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE--WYWVYACIGLVYVAIFILTLF 181 (394)
T ss_pred HHhhHhhccchhHHhhhhcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHh
Confidence 8877777777778899999875 567778888877777777777766665532 23 345777777777665554433
Q ss_pred -eccC
Q 012918 443 -KLPH 446 (453)
Q Consensus 443 -~vpe 446 (453)
..||
T Consensus 182 ~~~p~ 186 (394)
T PRK03699 182 SEFPA 186 (394)
T ss_pred cCCcc
Confidence 2454
No 166
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.34 E-value=2.3e-06 Score=87.71 Aligned_cols=129 Identities=13% Similarity=0.018 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+++..+.++++++++..++.. + ....++.-.+.
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~----~----------------~~~ll~~r~l~ 107 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP----Q----------------SALLLSSALLG 107 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc----c----------------hHHHHHHHHHH
Confidence 555667778888899999999999999999999999999888777664 1 33445566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~lia 436 (453)
|++.+.......+++.+.+|+ ++|..+|+.+....++..+.+.+.+.+.+..++ ....+.+.++..++.
T Consensus 108 Gig~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~-w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 108 GVGIGIIQAVMPSVIKRRFQQ---RTPLVMGLWSAALMGGGGLGAAITPWLVQHSET-WYQTLAWWALPAVVA 176 (393)
T ss_pred HhHHHHHhhhhhHHHHHHccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 888888777777888988873 467889999988888888888877776654322 223444444444433
No 167
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.34 E-value=3.2e-06 Score=86.66 Aligned_cols=182 Identities=17% Similarity=0.069 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
+-..+.+..|+..++...+..+.+.|+.++ ++-+ .. ..| +......+...+.+.+.+.+.||+||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~~~s------------~~-~~g-~~~~~~~~~~~~~~~~~~~~~dr~g~ 80 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDE-VHAR------------PA-MVG-FFFTGSAVIGILVSQFLAGRSDKRGD 80 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC------------HH-HHH-HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344466678888888776666666665432 2222 10 223 12222334444444455555999999
Q ss_pred chhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCC
Q 012918 310 RLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (453)
Q Consensus 310 r~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~ 388 (453)
||.++ .+.+..+++.....+.. + ....++...+.|...+.....-.+++.+..++++|.
T Consensus 81 r~~~~~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T PRK15011 81 RKSLIVFCCLLGVLACTLFAWNR----N----------------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGRE 140 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh----H----------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccch
Confidence 98765 44444444443333322 1 222112222223333332222234556655554444
Q ss_pred cceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 389 ~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
.+...++.+....+++++.+.+.+.+.+..| ....|.+.++.+++.++.+.+++||.+
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFS--FTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 5666688888888999999998888877666 345788888888888887777788764
No 168
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.33 E-value=6.6e-06 Score=89.83 Aligned_cols=231 Identities=11% Similarity=0.115 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc-----ccccccc--cccchh
Q 012918 37 AFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-----SWHRWFP--FLTSRA 109 (453)
Q Consensus 37 i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~-----~~~~~~~--~~~~~~ 109 (453)
..+.+++-.+.-++.........+|+.|..|+++|++..++...+..+|..+|+++++.. ||+...+ ..++..
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~ 251 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT 251 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 345556788899999999999999999999999999999999999999999999988641 3322100 000000
Q ss_pred hhcccchhhHHHHHHHHHHHHHhhheeeEeecc-cCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccC
Q 012918 110 CCAACGNLKAAFLVAVVFLTLCALVTIYFADEV-PLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESG 188 (453)
Q Consensus 110 ~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~-p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (453)
-..--+.|+..|.+.+++.++..++ ++.+||+ |....+. +.++. + . ++.+
T Consensus 252 dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~lp~~~~~~-~~~~~-~---~------~~~~----------------- 302 (633)
T TIGR00805 252 DPRWIGAWWIGFLICGGVALLTSIP-FFFFPKALPKEGKRV-NVDVH-E---T------EKLE----------------- 302 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH-HHhCccccCCccccc-chhhh-h---h------hccc-----------------
Confidence 0000024777788877776554443 4556654 3211100 00000 0 0 0000
Q ss_pred cccchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCC
Q 012918 189 HESDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGN 268 (453)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~ 268 (453)
+.+.+ ... + .......+.+.++.+.+- +.++..++..++...+++.+..|.+.|+.+ .|+-++
T Consensus 303 ---~~~~~----~~~---~--~~~~~~~~~~~~~~Ll~n-~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~-~~g~s~--- 365 (633)
T TIGR00805 303 ---KSEDK----SRK---K--NSDITKDFPKIIKRLLCN-PIYMLVILAQVIDSLAFNGYITFLPKYLEN-QYGISS--- 365 (633)
T ss_pred ---ccccc----cch---h--hhhhHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcH---
Confidence 00000 000 0 000001111122222222 356667778888888888899999988754 344321
Q ss_pred ChhhhhHHhhhhHHHHHHHHHHH-HHHHHhhhHHHhhhhcCc--chhhHHHHHHHHHHH
Q 012918 269 DHEVKFYDQGVREGAFGLLLNSV-VLGVSSFLIEPMCRWIGS--RLVWAISNFIVFACM 324 (453)
Q Consensus 269 ~~~~~~y~~gv~~g~~~l~~~s~-~~~i~s~~~~~l~d~~gr--r~l~~~g~~~~~i~l 324 (453)
.+ .| +.+....+ ..++.+++.++++||+++ |++..++.++..+++
T Consensus 366 ------~~----ag-~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 366 ------AE----AN-FLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred ------HH----HH-HHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 11 12 22222233 346678888999999984 455555555444443
No 169
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.31 E-value=2.2e-06 Score=91.26 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
.....+-.++.+++.|.+.||++|||+++.+.++.++..+...+.... +...++.++++..+.|+
T Consensus 51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~---------------~~~~~~~Ll~~~fl~g~ 115 (524)
T PF05977_consen 51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFF---------------GLLSPWLLLILTFLLGI 115 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHh---------------CcCCHHHHHHHHHHHHH
Confidence 344555667889999999999999999999998887666555444322 11235666677778888
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
+.+.....-.+++.|..|++ ......++.++...+++++.+.+.|.++..+|.. ++|.+-+++.+++.++.
T Consensus 116 ~~a~~~PA~~A~ip~lV~~~--~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~--~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 116 GSAFFNPAWQAIIPELVPKE--DLPAANALNSISFNIARIIGPALGGILVAFFGAA--AAFLINALSFLISILAL 186 (524)
T ss_pred HHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 88888777788999999986 5666689999999999999999999999888854 47888887766655443
No 170
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.31 E-value=2.7e-06 Score=89.21 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH-HHh
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF-TLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (453)
....+.+...+...+.+++.||+|||+.++.+.++++++.+..++.. + ....++.. .+.
T Consensus 59 ~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~----------------~~~l~~~~~~l~ 118 (455)
T TIGR00892 59 ISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS----N----------------VIELYLTAGFIT 118 (455)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHH
Confidence 33445555566778899999999999999998887777665554443 1 22222222 456
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+.......+++.+++|+ ++|+.+|+.+....++..+.+...+.+.+..| ..+.|.+.+++.+++.++..+.
T Consensus 119 G~~~~~~~~~~~~~~~~~~~~---~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g--wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 119 GLGLAFNFQPSLTMLGKYFYR---RRPLANGLAMAGSPVFLSTLAPLNQYLFESFG--WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HhcchhhhhHHHHHHHHHHHh---hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 777776544556788888863 46888999999999999988888888777665 3467888888777666554444
Q ss_pred cc
Q 012918 444 LP 445 (453)
Q Consensus 444 vp 445 (453)
.|
T Consensus 194 ~~ 195 (455)
T TIGR00892 194 RP 195 (455)
T ss_pred CC
Confidence 33
No 171
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.30 E-value=3.2e-06 Score=85.10 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=92.3
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
..+.+++.+++.||+|||+++..+.++++++.+...+....... ..+.....++.-.+.|++.+....
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~r~l~G~~~~~~~~ 115 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATI------------GIWAPILLLLARLIQGFSLGGEWG 115 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhh------------HHHHHHHHHHHHHHHHhhcccccc
Confidence 35678899999999999999999988888777665554321000 001112334445678888887777
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc------ccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG------GGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g------~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
...++++|..|++ ++|..+++.+....+++++.+...+.+....+ ......|.+.+++.+++.+ ....+||
T Consensus 116 ~~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~ 192 (394)
T TIGR00883 116 GAALYLAEYAPPG--KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEE 192 (394)
T ss_pred ccHHHhhhcCCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCC
Confidence 7778999999876 56788999999999998888776544322111 1123457766666665543 3344565
Q ss_pred C
Q 012918 447 L 447 (453)
Q Consensus 447 t 447 (453)
+
T Consensus 193 ~ 193 (394)
T TIGR00883 193 T 193 (394)
T ss_pred C
Confidence 4
No 172
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.29 E-value=5.7e-06 Score=96.32 Aligned_cols=145 Identities=12% Similarity=0.017 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHH
Q 012918 282 GAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFT 361 (453)
Q Consensus 282 g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (453)
..+...++.+..++.+.+.|+++||+|||+++........+..+...+.... + +.+.++++..
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~---------------s~~~l~~~~~ 116 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--N---------------SVPLLFAALF 116 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--h---------------hHHHHHHHHH
Confidence 3456667788888999999999999999997643222221111111111110 1 2455667778
Q ss_pred HhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 362 LLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 362 ~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
+.|++.+.......+++.+.+|.+ .++..+|+.+....+++++.+.+.|.+....| ..+.|+..+++.+++ +.+.
T Consensus 117 l~gi~~a~~~p~~~a~l~~~~~~~--~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~--~~~~~~~~~~~~~~~-~~~~ 191 (1140)
T PRK06814 117 LMGIHSALFGPIKYSILPDHLNKD--ELLGANALVEAGTFIAILLGTIIGGLATISGN--FVILVALLMGIAVLG-WLAS 191 (1140)
T ss_pred HHHHHHHhhchHHHHhhHhhcCcc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHH-HHHH
Confidence 899999999999999999999986 56777999999999999999999999887655 234554444444444 4455
Q ss_pred eeccCCC
Q 012918 442 LKLPHLS 448 (453)
Q Consensus 442 ~~vpet~ 448 (453)
+++|+++
T Consensus 192 ~~~~~~~ 198 (1140)
T PRK06814 192 LFIPKTG 198 (1140)
T ss_pred hhCCCCC
Confidence 6677653
No 173
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.26 E-value=7.9e-07 Score=90.78 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
-..+.++..+++-+.+.+.||+.||.++.+|..+..++.++.++... .+..+++=++.|+
T Consensus 74 ~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~--------------------Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 74 QTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH--------------------FWQVLLCRGFVGI 133 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhcc
Confidence 34577888889999999999999999999999999998888777752 4566677799999
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+-|.+..+--++|++.+|+. .+|+.++++|.++..+-.+.-.....+-+..+ ..++.|...++++++.++++.++++
T Consensus 134 GeAs~~~ia~s~IaD~f~~~--~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 134 GEASYSPIAPSLIADSFPDD--KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-WWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred chhhhcccchhHhhhcCcch--hhhHHHHHhhhhcccccceeEEeeeeeccCcc-ceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999987 45556999999988885554444333333333 2456799999999999999999888
Q ss_pred CCC
Q 012918 446 HLS 448 (453)
Q Consensus 446 et~ 448 (453)
|..
T Consensus 211 eP~ 213 (493)
T KOG1330|consen 211 EPE 213 (493)
T ss_pred Ccc
Confidence 765
No 174
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.20 E-value=3.5e-05 Score=81.91 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhH----HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 288 LNSVVLGVSSFLI----EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 288 ~~s~~~~i~s~~~----~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
++++...+.+.+. +++-||++.++.+.+|.++++++++.+.+......+ . +..+.+..+....+.
T Consensus 324 ~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~--~---------~~vs~~~~~~~~~l~ 392 (500)
T PRK09584 324 LNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND--A---------GIVSVNWLIASYGLQ 392 (500)
T ss_pred HhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--C---------CccCHHHHHHHHHHH
Confidence 4444444444444 555555566677788999999888776655422100 0 111233455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcc
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA 411 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~ 411 (453)
|++-....-+-.+++.+..|++ .+|..+|+..+...+++.+.+.+.
T Consensus 393 ~~ge~~~~p~g~s~~~~~aP~~--~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 393 SIGELMISGLGLAMVAQLVPQR--LMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHhHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888999999986 678889998877777887776665
No 175
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.20 E-value=6.1e-06 Score=87.00 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=120.8
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
+.+.-.....+.-+++.--..+++|++-.++.....++|+++|-++.+.. .+. .+. ..-..||++|.+..+
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~--~~~-----~~~--~~~~gW~~~FiI~G~ 214 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGV--FKL-----NGS--GGLAGWRWLFIIEGV 214 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHh--hhh-----cCC--CCcCCceeehhHHHH
Confidence 33333444555788888888999999999999999989988887777541 010 000 011479999999998
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.++..++..+.+|+.|....-..++ +.. +. .+..++ ..+ .
T Consensus 215 i~~~~gi~~f~~lp~~P~~~~fl~~~----------ek~-~~-----------------------~~~~~~---~~~-~- 255 (495)
T KOG2533|consen 215 ITLVLGIVVFFFLPDNPSKAWFLTDE----------EKE-LV-----------------------VERLRE---SPS-G- 255 (495)
T ss_pred HHHHHHheEEEEecCChhhccccchH----------HHH-HH-----------------------HHHHHh---ccC-C-
Confidence 88888888899999998632100000 000 00 000000 000 0
Q ss_pred CCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH
Q 012918 207 GSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l 286 (453)
+..++-++..+++.++. +..+..++..|+++.--+.+.++.+-|+.+.. + |++- +.. .-.
T Consensus 256 ~~~~~~~~~~~~~a~~d-----p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~-~------------~s~~-~a~-~ls 315 (495)
T KOG2533|consen 256 GIENKFKWKGFKEALKD-----PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG-G------------YSEL-QAN-LLS 315 (495)
T ss_pred CcccccCHHHHHHHHhc-----hhHHHHHHHHHHHhhccccHHHHHHHHHHcCC-C------------cChH-Hhc-ccc
Confidence 00001123334444433 34666788999999888888888888766511 0 1110 011 111
Q ss_pred HHHHHHHHHHhhhHHHhhhh----cCcchhhHHHHHHHH
Q 012918 287 LLNSVVLGVSSFLIEPMCRW----IGSRLVWAISNFIVF 321 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~----~grr~l~~~g~~~~~ 321 (453)
..+.+..+++.++.+.+.|| ..+|.++.....++.
T Consensus 316 ~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 316 TPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred chHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 23445677788889999999 555665555544443
No 176
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.18 E-value=4.6e-06 Score=83.34 Aligned_cols=137 Identities=18% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH-HHHhcc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV-FTLLGF 365 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gi 365 (453)
-.|++..+++|...|.++||+|||.++.++.+..++.++.-+... +. +++++ =...|+
T Consensus 75 SsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------------------~F-~afv~aR~l~Gi 133 (451)
T KOG2615|consen 75 SSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------------------NF-AAFVLARFLGGI 133 (451)
T ss_pred hHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------------------HH-HHHHHHHHhhhh
Confidence 357788999999999999999999999998777776655444332 12 23333 245666
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee---cccccchhhH--hHHHHHHHHHHHHh
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA---LFGGGNIPAF--VLASLSALAGGVVA 440 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~---~~g~~~~~~f--~~~a~~~liaa~~v 440 (453)
.=+. ..+-.|+++|+.+++ .++..|++.+++..++-++.+.+.|.+.. ..|.++ ..+ ++..+++...-++.
T Consensus 134 ~kgn-l~v~rAiisdV~sek--~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p-~alP~~~v~i~a~~~v~~~ 209 (451)
T KOG2615|consen 134 FKGN-LSVIRAIISDVVSEK--YRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYP-FALPCLLVFILAAGDVTFF 209 (451)
T ss_pred ccCc-hHHHHHHHHhhcChh--hccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCc-hHHHHHHHHHHHHHHHHHH
Confidence 6665 566788999999987 55666999999999999999999988765 666553 122 11222222224556
Q ss_pred heeccCCC
Q 012918 441 TLKLPHLS 448 (453)
Q Consensus 441 ~~~vpet~ 448 (453)
.+++|||-
T Consensus 210 ~~~lpETL 217 (451)
T KOG2615|consen 210 PWFLPETL 217 (451)
T ss_pred HHhCCccc
Confidence 67899994
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.16 E-value=8.9e-06 Score=82.78 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=114.4
Q ss_pred hhhhHHH--HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHH
Q 012918 277 QGVREGA--FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKV 354 (453)
Q Consensus 277 ~gv~~g~--~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (453)
-++..+. +..-+|+...++.+.++..+.+|+.||+++.....+|.++-+..++... ..
T Consensus 43 l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~--------------------f~ 102 (394)
T COG2814 43 LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS--------------------FA 102 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhcc--------------------HH
Confidence 3444433 3444699999999999999999999999999988888887776666641 33
Q ss_pred HHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHH
Q 012918 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSAL 434 (453)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~l 434 (453)
..++.=.+.|++.|.+..+-.++.+++.|++ .+|..+|+.+.-..+++.+.......+=+.+| .+.+|++-+++++
T Consensus 103 ~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~--~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G--WR~~F~~ia~l~l 178 (394)
T COG2814 103 VLLLARALAGLAHGVFWSIAAALAARLVPPG--KRGRALALVFTGLTLATVLGVPLGTFLGQLFG--WRATFLAIAVLAL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc--chhhHHHHHHHHHHHHHHHhccHHHHHHHHhh--HHHHHHHHHHHHH
Confidence 3444456678888888888888999999987 56666999999999998887665555656666 5678999999999
Q ss_pred HHHHHhheecc
Q 012918 435 AGGVVATLKLP 445 (453)
Q Consensus 435 iaa~~v~~~vp 445 (453)
++.+..++.+|
T Consensus 179 l~~~~~~~~lP 189 (394)
T COG2814 179 LALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHhCC
Confidence 99998888999
No 178
>PRK15075 citrate-proton symporter; Provisional
Probab=98.12 E-value=2.2e-05 Score=81.50 Aligned_cols=189 Identities=13% Similarity=0.083 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHH-HHHHHHHHHHhhhHHHhhhhcCcc
Q 012918 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGL-LLNSVVLGVSSFLIEPMCRWIGSR 310 (453)
Q Consensus 232 ~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l-~~~s~~~~i~s~~~~~l~d~~grr 310 (453)
-.+++..|+.++-...+.++.+....| |+.++ .+++.-..+... ....+...+.+++.+++.||+|||
T Consensus 18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~--~~~~~---------~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 18 LRVTSGNFLEMFDFFLFGFYATAIAKT--FFPAG---------NEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCC---------CchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 345667777777666666666654332 33221 112111111111 111222345678899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcc
Q 012918 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 390 (453)
Q Consensus 311 ~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G 390 (453)
++++.+.++++++.+.+++...... + ........++.-.+.|++.+.....-.++++|..|.+ .+|
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~----------~--~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~--~rg 152 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYAT----------I--GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG--RKG 152 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHH----------H--HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc--cch
Confidence 9999999888887776665531100 0 0000112334445678877765444457899999986 567
Q ss_pred eeehhhHHHHHHHHHHHhhccccce--------ecccccchhhHhHHHHHHHHHHHHhheeccCCC
Q 012918 391 LAIGVLNLAIVIPQMIVSLGAGPWD--------ALFGGGNIPAFVLASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 391 ~~~gi~n~~~~l~q~i~s~~~g~l~--------~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~ 448 (453)
+.+++.+....++..+.+...+.+. +..| .+..|++..+..++ .++.....||+.
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~g--Wr~~f~~~~~~~~~-~~~~~~~~~e~~ 215 (434)
T PRK15075 153 FYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWG--WRIPFLIGCLIVPF-IFLIRRSLEETE 215 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc--hHHHHHHHHHHHHH-HHHHHHhcCCCH
Confidence 7788888777776665554444332 2233 34467665443322 222334577763
No 179
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.12 E-value=1.2e-05 Score=80.94 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=87.5
Q ss_pred hhhHHHhhhhc-----CcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 297 SFLIEPMCRWI-----GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 297 s~~~~~l~d~~-----grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
.++.++++||+ ||||.|+ .+.+.++++++.+.+.... ...+.......+.++..+..
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-----------------~~l~~l~~~~~~~~~~~~~~ 100 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-----------------TDLPLLAGLAFLIAFFSATQ 100 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc-----------------hhHHHHHHHHHHHHHHHHHH
Confidence 67888999997 8999875 5777777665555443210 01222222323334444433
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc------chhhHhHHHHHHHHHHHHhheec
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG------NIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~------~~~~f~~~a~~~liaa~~v~~~v 444 (453)
...--+++.|..|++ ++|...|+......+++++.+.+.+.+.+..|.+ ....|++.+++.+++.+..++.+
T Consensus 101 ~~~~~a~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~ 178 (356)
T TIGR00901 101 DIALDAWRLEILSDE--ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLA 178 (356)
T ss_pred HHHHHHHHHHhCCHh--hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 333346889999876 5666789999999999999998888777666521 34578888888888776665567
Q ss_pred cCCC
Q 012918 445 PHLS 448 (453)
Q Consensus 445 pet~ 448 (453)
||++
T Consensus 179 ~e~~ 182 (356)
T TIGR00901 179 KEPQ 182 (356)
T ss_pred cCCC
Confidence 7753
No 180
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.10 E-value=1.8e-05 Score=79.60 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+.+..+.+..+++.+.. ... + ....++...+.
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~----~----------------~~~l~~~~~~~ 97 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP----G----------------TALLFAGTALI 97 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc----c----------------HHHHHHHHHHH
Confidence 55567778888999999999999999999999877766554432 111 1 23334445566
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAG 436 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~lia 436 (453)
|++.+.....-.+++.|..|+ ++|+.+|+.+....+++.+.+...+.+.+..+......|...+++.+++
T Consensus 98 g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFPQ---RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHhccchHHHHHhCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 777766555555677888764 4677899999999999998888877776554422233455555544443
No 181
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.10 E-value=8.2e-06 Score=85.42 Aligned_cols=141 Identities=8% Similarity=-0.055 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+..++.+++.||+|||+.+..+.++.+++.+.+.+... + .....++.-.+.
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~---------------~~~~l~~~r~~~ 141 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---G---------------GIALVVFCRVIQ 141 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---c---------------CchHHHHHHHHH
Confidence 4445577788888999999999999999999887776665544433321 1 123344555678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc-cccchhhHhHHHHHHHHHHHHhhe
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF-GGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~-g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
|++.+.....-.++++|.+|++ .+|+.+|+.+....+++++.+.+.+.+.+.. | ....|.+.++++++.+++..+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g--w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 142 GLAQGSVSPATHKIIVKWAPPK--ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG--WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHhcccchhhHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCeehhhhhHHHHHHHHHHHH
Confidence 8888888777778999999975 6788899999999999999998888877653 4 235788888887776665555
Q ss_pred eccC
Q 012918 443 KLPH 446 (453)
Q Consensus 443 ~vpe 446 (453)
+.||
T Consensus 218 ~~~~ 221 (465)
T TIGR00894 218 FPAD 221 (465)
T ss_pred HhcC
Confidence 5544
No 182
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.09 E-value=3.4e-05 Score=78.32 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH----
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL---- 362 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 362 (453)
..+++...++=++.+.++||.+.|..+.+|+++.+++.+.+++..+ ...+.++..+
T Consensus 71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s--------------------~~~~~~l~~lng~f 130 (448)
T COG2271 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPS--------------------LFLFAVLWVLNGWF 130 (448)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhH--------------------HHHHHHHHHHHHHH
Confidence 3566777888889999999999999999999999999988887752 2233333333
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcc--ccceecccccchhhHhHHHHHHHHHHHHh
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGA--GPWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~--g~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
.|.+|.+..- .+++.+|.+ .+|+..++-|++..++-.+++.+. +.+....+ -...|++.|+++++-++++
T Consensus 131 Qg~Gwpp~~~----~i~~Wfsr~--eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~--w~~~f~~pgiiaiival~~ 202 (448)
T COG2271 131 QGMGWPPCAR----TITHWFSRK--ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG--WRAAFYFPGIIAIIVALIL 202 (448)
T ss_pred hcCCCcHHHH----HHHHHcCcc--ccCceEEEehhhhhcccchHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHH
Confidence 4556655444 789999987 688899999999999998888877 55554432 3567999999999999888
Q ss_pred heec---cCCCC
Q 012918 441 TLKL---PHLSS 449 (453)
Q Consensus 441 ~~~v---pet~g 449 (453)
++.+ ||+.|
T Consensus 203 ~~~~rd~Pqs~G 214 (448)
T COG2271 203 LFLLRDRPQSEG 214 (448)
T ss_pred HHHhCCCccccC
Confidence 8765 55555
No 183
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.02 E-value=3.9e-05 Score=80.32 Aligned_cols=147 Identities=18% Similarity=0.087 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+...++.+...+.-++.+++.||+|.|++..++.++.++..+.+.+......+ +....+++-.+.
T Consensus 74 ~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~---------------s~~~lli~r~l~ 138 (462)
T PRK15034 74 LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT---------------PFGIFIVIALLC 138 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC---------------CHHHHHHHHHHH
Confidence 33445666777777889999999999999999888887777666554100000 134455566667
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhh----HHHHHHHHHHHhhccc-cceeccccc-----------chhhHh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVL----NLAIVIPQMIVSLGAG-PWDALFGGG-----------NIPAFV 427 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~----n~~~~l~q~i~s~~~g-~l~~~~g~~-----------~~~~f~ 427 (453)
|++ +.........+++.+|++ ++|+.+|+. |....+.|++.+.+.+ .+...+|.. -..+++
T Consensus 139 Gig-g~~f~~~~~~vs~wfp~~--~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~ 215 (462)
T PRK15034 139 GFA-GANFASSMGNISFFFPKA--KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAW 215 (462)
T ss_pred HHH-HHhHHHHHHHHHHHCCHh--HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHH
Confidence 776 555566667899999975 678888888 6777777777765442 122222211 112455
Q ss_pred HHHHHHHHHHHHhheeccCCC
Q 012918 428 LASLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 428 ~~a~~~liaa~~v~~~vpet~ 448 (453)
+.+++.+++++..++.+++.+
T Consensus 216 ~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 216 IWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 677777777766666666644
No 184
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.00 E-value=3.8e-05 Score=79.47 Aligned_cols=113 Identities=8% Similarity=-0.145 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+.+.+++.||+|||+....|.++++++.+........ + +....++...+.
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~--~---------------~~~~~l~~~~l~ 104 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI--M---------------NYTLFLVGLFIL 104 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--c---------------cHHHHHHHHHHH
Confidence 55566778889999999999999999999999999988877554332210 1 133344555667
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~ 415 (453)
|++.+.....--+.+.+..|++ .++..+++.+.+..++..+.+.+.+.+.
T Consensus 105 G~g~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 105 TAGLGFLETAANPYILVMGPES--TATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HhhHHHHHhhhhHHHHHHCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877665445677777765 5677799999999999998888777664
No 185
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.99 E-value=1.9e-05 Score=84.04 Aligned_cols=137 Identities=19% Similarity=0.160 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
.+..++-+-..+.+++.+.+.||+|||++++.+.+++.++-.++++.. + ....+++=.+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~----~----------------~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP----N----------------YWMFLIFRFLS 181 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC----c----------------HHHHHHHHHHH
Confidence 445556677788899999999999999999999999888776666664 1 45556666788
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|++.+....+.+.+++|+++.+.| +..+.+ ..+.+....+.+...+.+.. +.++.+++.++.+++..++ .++
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~R--~~~~~~-~~~~~~~~~~~~~~~a~~~~----~Wr~~~~~~~~~~~~~~~~-~~l 253 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQR--GLALTL-GGFFFVGGLMLPAGAAYITR----DWRWLFWIISIPSGLFLLL-WFL 253 (521)
T ss_pred HhhccchhHHhHhhheeecCcchh--hHHHHH-HHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHH-HHc
Confidence 999999999999999999998754 444666 45555555555555555554 2456777777777766665 455
Q ss_pred ccCCC
Q 012918 444 LPHLS 448 (453)
Q Consensus 444 vpet~ 448 (453)
.||++
T Consensus 254 ~~Es~ 258 (521)
T KOG0255|consen 254 PPESP 258 (521)
T ss_pred cCcCh
Confidence 66764
No 186
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.96 E-value=4.6e-05 Score=80.73 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=89.6
Q ss_pred HHhhhHHHhhhhc-----CcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchh
Q 012918 295 VSSFLIEPMCRWI-----GSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLA 368 (453)
Q Consensus 295 i~s~~~~~l~d~~-----grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a 368 (453)
+..++.++++||+ |||+.|+ .+.+..+++...+++.... + ......+...+.|+..+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~--~---------------~l~~l~~~~~l~~~~~a 122 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPG--T---------------QLRWLAALAVVIAFCSA 122 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCc--c---------------hHHHHHHHHHHHHHHHH
Confidence 4678888999999 9999766 5666666665555544200 1 13333334445566666
Q ss_pred hhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee-cccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 369 ITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA-LFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 369 ~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~-~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
.....--+++.|.+|.+ ++|...|+......++.++.+...+.+.+ ..| ....|++.+++.++..+... ++||+
T Consensus 123 ~~~i~~~a~~~~~~~~~--~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G--Wr~~f~i~a~l~ll~~l~~~-~~~e~ 197 (491)
T PRK11010 123 SQDIVFDAWKTDVLPAE--ERGAGAAISVLGYRLAMLVSGGLALWLADRYLG--WQGMYWLMAALLIPCIIATL-LAPEP 197 (491)
T ss_pred HHHHHHHHHHHHhcChh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 55545557899999875 46777999999999999999887777766 233 34578888888777766543 47876
Q ss_pred C
Q 012918 448 S 448 (453)
Q Consensus 448 ~ 448 (453)
.
T Consensus 198 ~ 198 (491)
T PRK11010 198 T 198 (491)
T ss_pred c
Confidence 3
No 187
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.95 E-value=8.3e-05 Score=79.83 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC
Q 012918 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (453)
Q Consensus 229 ~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g 308 (453)
+.+...+++.|..-+-++++.+|++..+.. +|..|+... . ..+ +....+++...+.+++.+.+..+++
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~-vf~~d~~~~-------~---~~~-~~s~~~~fg~~~g~~i~g~l~~~ir 377 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVN-VFGSDPISI-------T---EIG-WISSPVGFGSCAGAVILGLLFSKIR 377 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCccc-------c---eee-hhhhhHHHHHHHHHHHHHHHHHHcc
Confidence 444444556665555567777777776544 676664210 0 111 2223344555666777888888887
Q ss_pred cch-hhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccc-cCCC
Q 012918 309 SRL-VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELT-ADSG 386 (453)
Q Consensus 309 rr~-l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~-p~~~ 386 (453)
|-| .+++|.+.+.++...++.+. .|+. + ..+ .+..++.+|+++...... .+.++. |+
T Consensus 378 ~~Kw~li~~~~~~ta~~Gama~~~----~~n~---------~--~~i-~~~~l~g~giG~~~~~~~---~~~ql~~p~-- 436 (599)
T PF06609_consen 378 HIKWQLIFGSVLMTAFCGAMAAVR----PDNK---------N--AAI-AFLVLAGFGIGGILVPAI---VIAQLIVPD-- 436 (599)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcc----CCCc---------c--hHH-HHHHHHHHhHHHHHHHHH---HeeEeeeCc--
Confidence 744 44567666655444433332 1111 1 122 223344456666554443 444444 44
Q ss_pred CCcceeehhhHHHHHHHHHHHhh
Q 012918 387 GGQGLAIGVLNLAIVIPQMIVSL 409 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~i~s~ 409 (453)
+..|+..|+.-+.-.++..+...
T Consensus 437 ~~ig~a~gL~~s~R~~GGsIg~a 459 (599)
T PF06609_consen 437 EDIGTATGLTGSIRSIGGSIGYA 459 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHH
Confidence 36777777666665555544433
No 188
>PRK10133 L-fucose transporter; Provisional
Probab=97.90 E-value=0.00013 Score=76.18 Aligned_cols=112 Identities=8% Similarity=-0.096 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+..+.+...+.+.+.+++.||+|||++...+..+++++.+........ + +....++...+.
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a--~---------------~~~~ll~~r~l~ 127 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--M---------------NYTLFLVGLFII 127 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc--C---------------CHHHHHHHHHHH
Confidence 45566888899999999999999999999999999998877543221110 1 134455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccc
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l 414 (453)
|++.+.......+++.|..|++ .++..+++.+.+..++..+.+...+.+
T Consensus 128 G~g~g~~~~~~~~~v~~~~~~~--~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 128 AAGLGCLETAANPFVTVLGPES--SGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHhhHHHHHHHhCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777888765544 333348888888888888887765543
No 189
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.84 E-value=0.00011 Score=78.29 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
+|....+++.+.+.+++.+++.|++|||+.+.++.+.+.++-+..++.. + +....+.=.+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----~----------------~~~l~~GR~l 151 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP----S----------------WYQLIVGRIL 151 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHH
Confidence 3666678888999999999999999999999999999988777766665 2 4555556677
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.|++.|...-+---.++|+-|.+ .+|...+..+.+..+++++. .+.+..........+..+.+..+.+++-++. .+
T Consensus 152 ~G~g~G~~~~~~piy~sEiap~~--~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~ 227 (513)
T KOG0254|consen 152 TGLGVGGASVLAPVYISEIAPAH--IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-ML 227 (513)
T ss_pred hccchhhhhhcchhhHhhcCChh--hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HH
Confidence 88888877666556888888875 78888999888888887777 4344433221001234577777778877777 78
Q ss_pred eccCCC
Q 012918 443 KLPHLS 448 (453)
Q Consensus 443 ~vpet~ 448 (453)
++||+-
T Consensus 228 ~~pesp 233 (513)
T KOG0254|consen 228 FLPESP 233 (513)
T ss_pred hCCCCh
Confidence 899863
No 190
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.84 E-value=5.3e-05 Score=78.51 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHH---HHHhhhhhhhccccc-ceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHH
Q 012918 227 LPPAMHVVLIVMAL---TWLSWFPFFLFDTDW-MGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEP 302 (453)
Q Consensus 227 ~P~~l~~l~~~~f~---~w~g~~~~~~y~t~~-vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~ 302 (453)
-|+.+..+..++++ +..|.-+.+.||..+ ++|. . .+++.-..+ -.-.|+....++.++.++
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-L------------g~~~~~A~~--l~~~y~slVY~t~i~GG~ 83 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-L------------GFDETHATG--LFSAYGSLVYLTPIIGGW 83 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-C------------CcChHhhHH--HHHHHHHHHHHHHHHHHH
Confidence 58888888888885 555666666655543 2211 0 122322222 111344455567889999
Q ss_pred hhhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhccc
Q 012918 303 MCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAEL 381 (453)
Q Consensus 303 l~d~~-grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~ 381 (453)
+.||+ |+|+..++|.++++++.+.++..... ......+..++.+++.|-+-.-+-++++|.
T Consensus 84 laDr~LG~~~tI~lGail~~iGh~~L~~~~~~------------------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~l 145 (498)
T COG3104 84 LADRVLGTRRTIVLGAILMAIGHLVLAISSVS------------------GPGGLYIGLALIIVGTGLFKPNISSLLGEL 145 (498)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHhccccc------------------cccHHHHHHHHHHhccccccccHHHHHHHh
Confidence 99996 99999999999999988765544200 123445556667789998999999999999
Q ss_pred ccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 382 TADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 382 ~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
+|+++.++-...+++.+.+.++-++.++..|.+-+..|.. ..|..+++-..++.+
T Consensus 146 y~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~--~gF~~aavGm~~gl~ 200 (498)
T COG3104 146 YPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWH--VGFGLAAVGMIIGLV 200 (498)
T ss_pred cCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHH
Confidence 9976433333477777777888888998888887777633 368887776665554
No 191
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.83 E-value=0.0015 Score=68.64 Aligned_cols=257 Identities=16% Similarity=0.165 Sum_probs=151.8
Q ss_pred cccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHH
Q 012918 52 NTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLC 131 (453)
Q Consensus 52 n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~ 131 (453)
-+..+..-||++|.+..|.|....++.....+.|..++..++.. +.+. .+.-.+|.++++..++.
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~--~~~~-------------~~~a~~f~ia~~~~~~~ 191 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGY--LVKF-------------LGIALVFLIAAASGILS 191 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHh-------------cCchHHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999999988875 3332 13457788999998999
Q ss_pred hhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCC
Q 012918 132 ALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFND 211 (453)
Q Consensus 132 ~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (453)
.....+++||+-..+.+... . .++...+ +
T Consensus 192 ~~y~~~~l~Esl~~~~~~~~---~-----------~~~~~~~-----------------------------~-------- 220 (463)
T KOG2816|consen 192 LLYMLLFLPESLQEKERSDA---T-----------LRELTPG-----------------------------S-------- 220 (463)
T ss_pred HHHHhhccccccCccccccc---c-----------ccccCCC-----------------------------c--------
Confidence 99999999997543322110 0 0000000 0
Q ss_pred CchhhHHHHHHH---hccCCHHHHHHHHHHHH-HHHhhhh---hhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 212 GPGAVLVNLLTS---LRHLPPAMHVVLIVMAL-TWLSWFP---FFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 212 ~~~~~~~~~~~~---~~~~P~~l~~l~~~~f~-~w~g~~~---~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
.......+.++. ..+.+..+ .+|++.++ .+.-+-+ ..+|++.. -|+=|+ + ..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~r~~l-~l~l~~~~~~~~~~~~~~~~~~~yl~~----~f~w~~----------~---~~s~~ 282 (463)
T KOG2816|consen 221 LDSSHVADAFQSLTKVGPDRLLL-LLLLVAFLSSLPEAGGASDVLLLYLKA----KFGWNK----------K---EFSDL 282 (463)
T ss_pred ccchhhhhhhhhhcccCCCccch-HHHHHHHHHHHHHhcCceeEEEEEEee----ecCcCH----------H---HHHHH
Confidence 000011111222 12222322 33444333 2322211 22333322 222221 1 12211
Q ss_pred HHHHHHHHHHHHhh-hHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 285 GLLLNSVVLGVSSF-LIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~-~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
....+....+..+ ..+.+.+.+|-|++...|.....+.++..++.... +..+...+..++.
T Consensus 283 -~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----------------w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 283 -LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----------------WMMFAAGVVVALA 344 (463)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----------------hhhhHHHHHHHhh
Confidence 2223344444544 44578888899997778888888877777776511 1233444455555
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
++..-...+ .++.+...+ .+|+..++......+.+++.+...+.+..
T Consensus 345 ~~~~pa~~s----~~s~~v~~~--e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 345 GIVFPAIRA----FASILVSPE--EQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred cchhHHHHh----HHHhhcccc--cccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 555444444 566666654 68899999999999999999998887643
No 192
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.77 E-value=5.3e-05 Score=78.25 Aligned_cols=149 Identities=12% Similarity=0.190 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhh----cCcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRW----IGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~----~grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (453)
..+.+..+..++...+.+.++|| +||||.|+ .+...+++++..+.+.... + .....+...+
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~--~------------~~~~~~~~~~ 104 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF--S------------ATGKLVYAYI 104 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC--C------------cchHHHHHHH
Confidence 45566777888888999999997 68877666 5666666655544433210 0 0001222333
Q ss_pred HHHHhccchhhhccccc-hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc-----cchhhHhHHHHH
Q 012918 359 VFTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG-----GNIPAFVLASLS 432 (453)
Q Consensus 359 ~~~~~Gi~~a~~~~vP~-aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~-----~~~~~f~~~a~~ 432 (453)
...+++++++. ..+|+ ++.+|..+++ ++++...+..+....++.++++...+++...+++ .....+.+.+++
T Consensus 105 ~~~~~~~~~~~-~~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l 182 (437)
T TIGR00792 105 TYILLGLFYSF-VNIPYWSLVPAITLDP-RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI 182 (437)
T ss_pred HHHHHHHHHHh-hcccHhhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 44556777776 44564 6778877543 3466668888888888888887776666543331 123357777777
Q ss_pred HHHHHHHhheeccCCC
Q 012918 433 ALAGGVVATLKLPHLS 448 (453)
Q Consensus 433 ~liaa~~v~~~vpet~ 448 (453)
+++..+.+.+.+||.+
T Consensus 183 ~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 183 GVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHcCCEecC
Confidence 7777776667778754
No 193
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.76 E-value=0.00011 Score=75.43 Aligned_cols=133 Identities=19% Similarity=0.100 Sum_probs=87.5
Q ss_pred HHHhhhHHHhhhhc-----Ccchh-hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccch
Q 012918 294 GVSSFLIEPMCRWI-----GSRLV-WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPL 367 (453)
Q Consensus 294 ~i~s~~~~~l~d~~-----grr~l-~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~ 367 (453)
.+...+.++++||+ ||||- .+++.++.++++..+++... + . ..+...++..+.++..
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~---~------------~--~~~~l~~~~~~~~~~~ 108 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP---H------------A--ALWPLAGLAVLVAFLS 108 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc---c------------c--hHHHHHHHHHHHHHHH
Confidence 46678888999999 88774 55678888777766555421 0 0 1222333333445555
Q ss_pred hhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc-cccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 368 AITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF-GGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 368 a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~-g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
+.....--+++.|+.|++ ++|...++......+++++.+.+.+.+.+.. | ....|++.+++.++..+. .+.+||
T Consensus 109 ~~~~~~~~al~~~~~~~~--~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g--w~~~f~i~a~~~l~~~l~-~~~~~e 183 (402)
T PRK11902 109 ASQDIVFDAYSTDVLHPE--ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG--WGNTYLLMAGLMLAGALT-TLWAPE 183 (402)
T ss_pred HHHHHHHHHHHHHhcChh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC--HHHHHHHHHHHHHHHHHH-HHhcCC
Confidence 544444446889999876 5677799988888889998888777766543 3 345788888877766553 456777
Q ss_pred CC
Q 012918 447 LS 448 (453)
Q Consensus 447 t~ 448 (453)
++
T Consensus 184 ~~ 185 (402)
T PRK11902 184 PE 185 (402)
T ss_pred Cc
Confidence 64
No 194
>PTZ00207 hypothetical protein; Provisional
Probab=97.69 E-value=0.00019 Score=77.41 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=89.0
Q ss_pred HHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcccc
Q 012918 295 VSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVP 374 (453)
Q Consensus 295 i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP 374 (453)
+..++.+++.||+|+|+++.+|.+.++++.+.+++.... . + .+ ..+.+.+...+.|++.+......
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~--~-----i----~~---s~~~l~l~r~l~G~G~~~~~~~~ 141 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE--V-----I----EG---SVVRLSVYNGLMTLGCMLFDLGA 141 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--c-----c----cC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999888777765210 0 0 00 24455556667788877666666
Q ss_pred chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheec
Q 012918 375 FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKL 444 (453)
Q Consensus 375 ~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~v 444 (453)
...+.+.+|+ .+|..+|+.+.+..++..+.+.+...+.. .+ ....|++.++..++.++....++
T Consensus 142 ~~~i~~~Fp~---~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~--~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 142 VVTVLSVFPS---NRGAVVAIMKTFTGLGSAILGSIQLAFFS-DN--TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHhChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--HHHHHHHHHHHHHHHHHHHHhhe
Confidence 6788889985 46889999999999999876554444432 11 22356666776666655555443
No 195
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.64 E-value=0.00048 Score=71.84 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHH-HHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATT-AIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
.+.++...+..++-.+...+..-|+++..+.++.+++.+.- .++... | ...|+++.++......+.-...++
T Consensus 262 ~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~--n-----~~~Gi~d~~f~lgd~~l~~~~~~i 334 (433)
T PF03092_consen 262 IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW--N-----LDLGIPDQWFALGDTILEEVIGMI 334 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE--e-----eeeCcCCeEEEEEhHHHHHHHHHH
Confidence 34445555555555566666788888877665554433211 111100 1 012233333333333333344444
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc------chhhHhHHHHHHHHHHHH
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG------NIPAFVLASLSALAGGVV 439 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~------~~~~f~~~a~~~liaa~~ 439 (453)
.+-+.. .+++|+-|+. ..|+..|++.....+++.+++.+...+.+.+|.+ -...+.+.+++.++...+
T Consensus 335 ~~mP~l----vl~a~lcP~G--~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l 408 (433)
T PF03092_consen 335 AFMPSL----VLAARLCPKG--SEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL 408 (433)
T ss_pred HHHHHH----HHHHHHCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 444422 2678888865 6788888888888888888777766666555421 134577778878666665
Q ss_pred hheeccC
Q 012918 440 ATLKLPH 446 (453)
Q Consensus 440 v~~~vpe 446 (453)
+ .++|+
T Consensus 409 l-~lLp~ 414 (433)
T PF03092_consen 409 L-FLLPP 414 (433)
T ss_pred H-HHcCC
Confidence 4 44554
No 196
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.61 E-value=0.0004 Score=71.95 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc-ch
Q 012918 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS-RL 311 (453)
Q Consensus 233 ~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr-r~ 311 (453)
++|...|+.|.+|-...-|.+.|+.++ ++-+ ..+.| +.+..+.+..++.+.+.+++.||+|| |+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~g~s-------------~~~iG-l~~a~~~~~~~i~~~~~g~l~dr~g~~r~ 70 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKT-LHFS-------------GAEIG-WVYSSTGIAAILMPILVGIIADKWLSAQK 70 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 456666666665555555556665442 1111 11344 55567788899999999999999965 66
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhh----c----cccc
Q 012918 312 VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAIT----A----ELTA 383 (453)
Q Consensus 312 l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLi----s----e~~p 383 (453)
++.++.++.+++.....+.. + .+...++..+.|+.+++...+--++. . |...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~ 130 (418)
T TIGR00889 71 VYAVCHFAGALLLFFAAQVT----T----------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVT 130 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhc----C----------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchh
Confidence 77777666655544433332 1 22222333445555444332221221 1 1111
Q ss_pred CCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 384 DSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 384 ~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
.. ++.+.+|. ++..+.+.+.|.+ .. ... ...|.+.++..++..++ .+.+||+
T Consensus 131 ~~--~~~r~~G~------lG~~ig~~l~g~l-~~-~~~-~~~f~~~~~~~~~~~~~-~~~~~e~ 182 (418)
T TIGR00889 131 DF--PPIRVMGT------IGFIAAMWAVSLL-DI-ELS-NIQLYITAGSSALLGVF-ALTLPDI 182 (418)
T ss_pred cC--CCeeeehh------HHHHHHHHHHHHh-cc-cch-hHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 11 22334443 4556666655554 11 111 12477777777777665 4567776
No 197
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.00056 Score=66.17 Aligned_cols=174 Identities=19% Similarity=0.274 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
..+++|.+.+..+.-..+|+||..-.+.++.+ -|+-++. ..+..--.+|. ++++.|-+-+.++||
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~-rfGlS~~-------------~a~~i~s~vy~-Isav~spvfg~i~Dk 326 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQK-RFGLSAV-------------SAGNILSTVYG-ISAVLSPVFGAISDK 326 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hhCCChh-------------hccchhhhhhh-hhhhhhhhHHHhHhh
Confidence 34556666666666677788887766665443 2332211 11112222333 344456677889999
Q ss_pred cCcchhhHHHHHHHHHHH-HHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC
Q 012918 307 IGSRLVWAISNFIVFACM-ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (453)
Q Consensus 307 ~grr~l~~~g~~~~~i~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 385 (453)
.|++..|+.+..+..+.- .+..|... +++.. +.++|.++...----+.+++-..|++
T Consensus 327 ~G~n~~wv~~a~~~tl~~H~~l~Ft~l-------------------sPy~~---m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 327 YGFNLWWVASACILTLLGHSGLFFTFL-------------------SPYTS---MTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred hcceehhHHHHHHHHHHHhhhHHhhhc-------------------cHHHH---HHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 999999998655544322 22222221 23333 34556665543333335888888876
Q ss_pred CCCcceeehhhHHHHHHHHHHHhhccccceecccccc-hhh-HhHHHHHHHHHHHH
Q 012918 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-IPA-FVLASLSALAGGVV 439 (453)
Q Consensus 386 ~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~-~~~-f~~~a~~~liaa~~ 439 (453)
..|++.|...+-..++-.+++.+.|.+.+.-|++. .-+ |..-+.+++++...
T Consensus 385 --qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi 438 (459)
T KOG4686|consen 385 --QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI 438 (459)
T ss_pred --HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 68888999888888898999999999998877543 112 44445555555443
No 198
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0016 Score=66.06 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=46.1
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccc
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~ 95 (453)
.+..++-.++...|.....|+.+.-|++.-.+-.++.|.+.++|+++|.+++..
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455667778888888888999999999877778899999999999999988864
No 199
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.57 E-value=0.00026 Score=73.73 Aligned_cols=134 Identities=10% Similarity=-0.037 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 287 LLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 287 ~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
-.+.....+.-++.+.+.||+|-|+++.++.+.-++..+.+++.. ....+.++=.++|++
T Consensus 69 s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--------------------Sl~~L~i~R~llGva 128 (511)
T TIGR00806 69 PVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--------------------SVWHMQLMEVFYSVT 128 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 345567778889999999999999999999888888777777765 255666777889999
Q ss_pred hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc-hhhHhHHHHHHHHHHHHhheecc
Q 012918 367 LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-IPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~-~~~f~~~a~~~liaa~~v~~~vp 445 (453)
-|+.. .=+..+...+|.+ .+|+..|+.+.+..++.++++.+.+.+. .+|-.. .....+ ++.+.+-+++..+++|
T Consensus 129 EA~~~-A~~syI~~WfP~k--ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~I-sl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 129 MAARI-AYSSYIFSLVPPS--RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNII-SLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHH-HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHHH-HHHHHHHHHHHHHhCC
Confidence 99977 7788999999986 6777799999999999999998888743 344211 112333 3333344444456666
No 200
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.55 E-value=0.00021 Score=76.74 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
|-...+.+.+.+...+.++++|.+|||..++.|.++..+++...+.... ....+.-.+++
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--------------------~~~~iag~~l~ 141 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--------------------MNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc--------------------HHHHHHHHHHH
Confidence 4445567777778888999999999999999999988887766555541 33455566778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc--cccchhhHhHHHHHHHHHHHHhh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF--GGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~--g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
|++.|..... ...++|..|++.| +...++.. +|-++.....+.+-+.+ ..+.++.|.+.++.+.++.+...
T Consensus 142 GvgaG~~~~~-~~~isEl~p~k~R--~~~~~~~~----~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 142 GVGAGVQELA-ALAISELVPNKWR--GLGLAIAS----IPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHhhHHHHHH-HHHHHHhcccchh--hhHhHHHH----HHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 8887776654 3458999998644 43344333 34333332222222211 22357788888888777766544
Q ss_pred e-eccCC
Q 012918 442 L-KLPHL 447 (453)
Q Consensus 442 ~-~vpet 447 (453)
+ .-|++
T Consensus 215 ~fY~PP~ 221 (599)
T PF06609_consen 215 FFYFPPP 221 (599)
T ss_pred HHhCCCc
Confidence 3 45554
No 201
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.0028 Score=63.50 Aligned_cols=263 Identities=11% Similarity=0.085 Sum_probs=151.9
Q ss_pred hHHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchh
Q 012918 38 FVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNL 117 (453)
Q Consensus 38 ~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~ 117 (453)
.....|..+...++...++-.|++|=+-.|+ +-+...+.++...++|+.+|..+.-- ..+ . .+.|
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavp--la~-----------~-~~gW 164 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVP--LAQ-----------H-SGGW 164 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhH--HHH-----------h-hccH
Confidence 3455778888889988899999999888754 45889999999999999888755521 111 1 1468
Q ss_pred hHHHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhh
Q 012918 118 KAAFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKH 197 (453)
Q Consensus 118 r~~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (453)
|....+=+.+.++.+++ -.|...+.. ..++ +
T Consensus 165 ~~aL~~WAl~allAl~~---WlPq~~r~~-~~~~---~------------------------------------------ 195 (395)
T COG2807 165 RGALGFWALLALLALLI---WLPQALREQ-AASI---A------------------------------------------ 195 (395)
T ss_pred HHHHHHHHHHHHHHHHH---Hhhhccccc-cccc---c------------------------------------------
Confidence 88887777776555543 233321100 0000 0
Q ss_pred ccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHh
Q 012918 198 ISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQ 277 (453)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~ 277 (453)
....+-+.+|++ | .-|.+-+-+-+|-+.+++.+-..+.++.|.-+.. -+.
T Consensus 196 --------------~~~~~~~~vw~~----~-~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa-----------~~a 245 (395)
T COG2807 196 --------------TKLVSVRKVWRS----P-LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSA-----------AEA 245 (395)
T ss_pred --------------cccccccccccC----c-hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCH-----------HHh
Confidence 000011223333 2 2233333233344444444444555443322211 112
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhHHHhhhhc-CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHH
Q 012918 278 GVREGAFGLLLNSVVLGVSSFLIEPMCRWI-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS 356 (453)
Q Consensus 278 gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~-grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (453)
| +.+.+..++++..++..|.+.+|. .+|++.+...+.+.+++.++.+... + ..
T Consensus 246 G-----~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~---~------------------~~ 299 (395)
T COG2807 246 G-----SLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG---Q------------------LP 299 (395)
T ss_pred h-----hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh---h------------------HH
Confidence 2 344456678888999999999865 6777777776677666666655431 1 11
Q ss_pred HHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc
Q 012918 357 LVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG 421 (453)
Q Consensus 357 ~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~ 421 (453)
+.-..++|++++....+-..++..-.++. |..+.-.|.....-|+=-...+..+|.+.|+.|+-
T Consensus 300 ~lw~~llG~G~G~~F~laL~li~~rs~~a-~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 300 ILWALLLGLGQGGAFPLALTLILLRSSDA-AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHHHHhCccchHHHHHHHHHHhhcCCh-HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 11136788998887777666666555443 34444444444444444445567888899999854
No 202
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.51 E-value=0.00015 Score=75.29 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhhhHHHhhh----hcCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCR----WIGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d----~~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
.+.+.-+..++...+.+.++| |+||||.|+. |.+..++++.++.... + .+.+ +........+.
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~--p-~~~~---------~~~~~~~~~~~ 109 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP--P-AGLS---------FTAKLVWLFVF 109 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc--c-chhh---------hhhHHHHHHHH
Confidence 344455666777778899999 7999999885 7777777665554331 0 0000 00012222444
Q ss_pred HHHhccchhhhcccc-chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccccc-----chhhHhHHHHHH
Q 012918 360 FTLLGFPLAITYSVP-FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGG-----NIPAFVLASLSA 433 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP-~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~-----~~~~f~~~a~~~ 433 (453)
..++.++|... .+| .++++|..+++ +++..-.+.-+.+..++.++++.+.+.+++.+|.+ ......+.+++.
T Consensus 110 ~~l~~~~~t~~-~i~~~al~~~lt~~~-~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~ 187 (428)
T PF13347_consen 110 YILFDIAYTFV-QIPYNALIPELTPDP-DERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVG 187 (428)
T ss_pred HHHHHHhhhhc-cCchhhcCccccccH-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHH
Confidence 45568888885 555 57888888865 35556677777888899988888888888777643 234466667777
Q ss_pred HHHHHHhheeccC
Q 012918 434 LAGGVVATLKLPH 446 (453)
Q Consensus 434 liaa~~v~~~vpe 446 (453)
+++.+.+.+.+||
T Consensus 188 ~v~~~i~~~~~ke 200 (428)
T PF13347_consen 188 LVFFLITFFFVKE 200 (428)
T ss_pred HHHhhhhhheeee
Confidence 7777777778888
No 203
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00069 Score=68.44 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=149.7
Q ss_pred hcccccchhhHHHHhcCCCccc-hhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHH
Q 012918 49 LANNTVQGPARALLADLSGPDQ-RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (453)
Q Consensus 49 ~a~n~~~~p~rA~i~D~~p~~q-r~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~ 127 (453)
++...+....-|+++|..|+|. |+++.++.--++++|-++|+-.|++ ..+. ...+..|.+.+++
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGi--lYe~-------------~Gk~aPFlVL~~v 235 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGI--LYEF-------------AGKSAPFLVLAIV 235 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccc--hHhh-------------cCCcCcHHHHHHH
Confidence 3444455667899999999865 7999999999999999999999987 2222 1345678888777
Q ss_pred HHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCC
Q 012918 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (453)
Q Consensus 128 ~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (453)
.++-..+-++.++.+...+. ..
T Consensus 236 ~Lld~~L~l~vi~p~~~~~~-~~--------------------------------------------------------- 257 (464)
T KOG3764|consen 236 LLLDGALQLLVIEPTEMDPD-ST--------------------------------------------------------- 257 (464)
T ss_pred HHHHHHHHHheeCccccCcc-cc---------------------------------------------------------
Confidence 76666655555543211110 00
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccc---ccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDT---DWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t---~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
++...++++++ .|.-.. ..+--|++-.++.+--+ .|+-|... .| .++.|+
T Consensus 258 ----~~~~~~~~Ll~----dP~I~~----~agai~~~n~~lafLePtlslwm~e~m~--~p--------~w~~G~----- 310 (464)
T KOG3764|consen 258 ----EQGTPMWSLLM----DPYILL----IAGAITFSNSSLAFLEPTLSLWMLETMF--TP--------GWEVGL----- 310 (464)
T ss_pred ----ccCccHHHHHh----CchHhh----hhcchhhccchHHHhCcccHHHHHHhcc--CC--------Ccceee-----
Confidence 01112333332 222211 11111221111111111 23333222 11 123333
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcch-hhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRL-VWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~-l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
+.+-.++..++.+-+-+.+.||++.-+ +.. .|.+..+++...+.+++. +...++.-..
T Consensus 311 ~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~--------------------~~~L~vp~~~ 370 (464)
T KOG3764|consen 311 AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS--------------------IAQLWVPNFG 370 (464)
T ss_pred eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh--------------------HHHHhhhhHH
Confidence 333455677888888999999999433 222 244444433333333431 2223333333
Q ss_pred hccchhhhccc--c--chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 363 LGFPLAITYSV--P--FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 363 ~Gi~~a~~~~v--P--~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
.|++-+..... | ..++-+-|.++.+-.|...++.+.+.+++-.+.+.+.|.+.+.+|-. |...+-++.+++-+-
T Consensus 371 l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~--wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 371 LGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE--WLMTIIGILNLIYAP 448 (464)
T ss_pred HHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH--HHHHHHHHHHHHHHH
Confidence 33333332222 1 11222333333346788889999999999999999999999999844 677777888887554
Q ss_pred Hh
Q 012918 439 VA 440 (453)
Q Consensus 439 ~v 440 (453)
..
T Consensus 449 vl 450 (464)
T KOG3764|consen 449 VL 450 (464)
T ss_pred HH
Confidence 43
No 204
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.46 E-value=0.00078 Score=70.42 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=63.5
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhccc----chhhH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAAC----GNLKA 119 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~----~~~r~ 119 (453)
-.+.+++ +...+..|+|++|..-++||.|+.+....-..+|.++|..++.. |..++..-....+ .++-.
T Consensus 137 R~l~Gvg-~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~------f~~Lg~~G~~i~~~~~~n~YTa 209 (488)
T KOG2325|consen 137 RILTGVG-VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA------FTPLGEKGFMILPGLIFNMYTA 209 (488)
T ss_pred HHHcCcC-cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH------HhhhcCCceEEcCcceEEecch
Confidence 3334443 25577899999999999999999999988777888887776643 1111100000000 24445
Q ss_pred HHHHHHHHHHHHhhheeeEeecccCCCCC
Q 012918 120 AFLVAVVFLTLCALVTIYFADEVPLTVNQ 148 (453)
Q Consensus 120 ~f~i~~i~~~i~~~it~~~v~E~p~~~~~ 148 (453)
.-++.++.-++..++..++.+|.++...+
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~~~~~~~ 238 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEVYRGIID 238 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccCccc
Confidence 55566666667777888899998775544
No 205
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.43 E-value=0.00024 Score=77.70 Aligned_cols=158 Identities=13% Similarity=0.028 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCC--------------ccc-------
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGG--------------IEH------- 344 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~--------------~~~------- 344 (453)
...+.+.+++..++.+.+.||.|||+.+.+|.++++++.+..++.+...+ .|... ..+
T Consensus 74 ~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~-~y~~~~~~~~~~~~~~~~~~~c~~~~~~~ 152 (633)
T TIGR00805 74 NGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSG-RYSYSTTVSSTGNLSSANSFLCMENLTQA 152 (633)
T ss_pred eehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcC-CccccccccccccccccccccccCCCCCC
Confidence 34566778888899999999999999999999999988877666542210 00000 000
Q ss_pred ----------CCCCc-hhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccc
Q 012918 345 ----------GIGAN-QAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGP 413 (453)
Q Consensus 345 ----------~~~~~-~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~ 413 (453)
....+ ......+++.-.+.|++-+....+-.+++.|.+|.+ .+|.++|+++....++..+..++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~--~~~~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 153 LRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK--NSPLYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred ccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc--ccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00000 111334445667899999999999899999999976 78889999999999999888888777
Q ss_pred ceecccc--------------c------chhhHhHHHHHHHHHHHHhheeccCC
Q 012918 414 WDALFGG--------------G------NIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 414 l~~~~g~--------------~------~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+.+...+ + .+..|++.+++.++.++. ++++|++
T Consensus 231 l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~-l~~~p~~ 283 (633)
T TIGR00805 231 CLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP-FFFFPKA 283 (633)
T ss_pred HHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHhCccc
Confidence 6543210 0 112377778777776654 3445543
No 206
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0016 Score=68.45 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
..++.+-.++++++.+.+.||+|||+.+.++.++..++.+.+.+.... + ...+.++-=.+.|+
T Consensus 66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~--~---------------~~e~li~GR~i~Gl 128 (485)
T KOG0569|consen 66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA--P---------------SFEMLILGRLIVGL 128 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh--h---------------hHHHHHHHHHHHHH
Confidence 345777888899999999999999999998887776666655555432 1 13334444456777
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhc-cccceecccccchh-h-HhHHHHHHHHHHHHhhe
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG-AGPWDALFGGGNIP-A-FVLASLSALAGGVVATL 442 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~-~g~l~~~~g~~~~~-~-f~~~a~~~liaa~~v~~ 442 (453)
..+....+-=..++|.-|++ -+|..-....+++.++.++.... .+.+ +|++..| . +.+..+.+++. ++...
T Consensus 129 ~~gl~~~~~pmyl~E~sP~~--~RG~~g~~~~~~~~~g~ll~~~~~l~~i---lGt~~~W~~l~~~~~i~~~~~-l~~l~ 202 (485)
T KOG0569|consen 129 ACGLSTGLVPMYLTEISPKN--LRGALGTLLQIGVVIGILLGQVLGLPSL---LGTEDLWPYLLAFPLIPALLQ-LALLP 202 (485)
T ss_pred HhHHHHHHHHHHHhhcChhh--hccHHHHHHHHHHHHHHHHHHHHccHHh---cCCCcchHHHHHHHHHHHHHH-HHHHh
Confidence 77766665556789999987 67766778888888888877443 3333 4554422 2 33333434433 44567
Q ss_pred eccCCC
Q 012918 443 KLPHLS 448 (453)
Q Consensus 443 ~vpet~ 448 (453)
++||+-
T Consensus 203 ~~PESP 208 (485)
T KOG0569|consen 203 FLPESP 208 (485)
T ss_pred cCCCCc
Confidence 899973
No 207
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.38 E-value=8.6e-06 Score=84.65 Aligned_cols=143 Identities=14% Similarity=0.073 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
......+...+.+++.+.+.||+|||+.+.++.+++.++.+...+.... + +.....+.-.+.|
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--~---------------~~~~~~~~R~~~G 113 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--N---------------NFWMLLIGRFLIG 113 (451)
T ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--c---------------ccccccccccccc
Confidence 3344556778889999999999999999999888877766555544310 0 1334445556788
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc-ccchhhHhHHHHHHHHHHHHhhee
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-GGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g-~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
++.|....+-..++.|+.|++ .+|....+.+.+..++.++.....-.+.+..+ ......+.+.++.+++..+ ..++
T Consensus 114 ~~~g~~~~~~~~~~~E~~~~~--~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~ 190 (451)
T PF00083_consen 114 FGIGGAYVVSPIYISEIAPPK--HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFF 190 (451)
T ss_pred ccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 888887777778999999986 56888899888888888777665533322111 1123346666666665444 4578
Q ss_pred ccCC
Q 012918 444 LPHL 447 (453)
Q Consensus 444 vpet 447 (453)
+||+
T Consensus 191 ~pES 194 (451)
T PF00083_consen 191 LPES 194 (451)
T ss_pred cccc
Confidence 9998
No 208
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.35 E-value=0.0014 Score=68.83 Aligned_cols=135 Identities=19% Similarity=0.189 Sum_probs=99.0
Q ss_pred HHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhh
Q 012918 290 SVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (453)
Q Consensus 290 s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (453)
++...+.+...|-++||+|||..+....+...+.-..+.+. .+..+++.. ...++++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----------------------~~~~~~~~~-l~g~~~~ 128 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----------------------GYWFFLLLG-LSGGFSA 128 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----------------------HHHHhhhcc-cccchhh
Confidence 46678888999999999999999887644432222211111 111222333 4445667
Q ss_pred hccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCC
Q 012918 370 TYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (453)
Q Consensus 370 ~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g 449 (453)
+.+.-++.+++....+. +-..+|+++-+.+..-.+++...+.+.+..|.. .+|.++++..+++.+....++||+.-
T Consensus 129 ~~s~~~a~vadis~~~~--R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a--~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 129 IFSVGFAYVADISSEEE--RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIA--LVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred hhhhhhhheeeccchhH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHHHhhccccccC
Confidence 78888899999988764 444599999999999999999888888886644 48999999999999999999999875
Q ss_pred CC
Q 012918 450 NS 451 (453)
Q Consensus 450 ~~ 451 (453)
..
T Consensus 205 ~~ 206 (463)
T KOG2816|consen 205 EK 206 (463)
T ss_pred cc
Confidence 43
No 209
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.35 E-value=0.0025 Score=65.47 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=72.5
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhH-HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (453)
+...+.+++.+.+.||.+.-|.-+ .-.....++-.....++....+ .+.....+..+|.....
T Consensus 312 v~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~----------------~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 312 VAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGD----------------SVIVFTTCGLLGFFGTG 375 (480)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCc----------------eEehhhhHHHHHHhhcC
Confidence 456778889999999976533333 3222222221111112211100 11122334445554444
Q ss_pred hccccchhhccc-ccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc--hhhHhHHHHHHHHHHHHhheecc
Q 012918 370 TYSVPFAITAEL-TADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN--IPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 370 ~~~vP~aLise~-~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~--~~~f~~~a~~~liaa~~v~~~vp 445 (453)
..-+-+.+-.|. +|.. -|+..|++|..-.+--++....++...+..+... -+.-+...+.++++++++.++-|
T Consensus 376 ~~Pig~ElgvE~TyPv~---E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 376 YLPIGFELGVETTYPVA---EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred CCCcceeeeeeeccccC---CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 444555666665 4543 4666888888776666667777777766655111 12356667777777777665544
No 210
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.32 E-value=0.0016 Score=66.23 Aligned_cols=135 Identities=17% Similarity=0.086 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcch----hhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRL----VWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~----l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
+.+.++.+...+.+.+.+++.||+|||+ ...++..... ..+.. . .+ +.+..++.
T Consensus 43 ~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~-----~~~~~-~-~~---------------~~~~l~i~ 100 (382)
T PRK11128 43 LLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA-----VAFWF-G-AH---------------SFWLLFVA 100 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH-----HHHHH-h-cc---------------cHHHHHHH
Confidence 4455677788888999999999999842 2222211111 11111 0 01 13333344
Q ss_pred HHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 360 FTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
..+.|++.+.......+++.+..+ +++..+|.......++..+.+.+.+.+.+..|-. ..|++.++..++..++
T Consensus 101 ~~l~g~~~~~~~~~~~a~~~~~~~----~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~--~~f~~~~~~~~~~~~~ 174 (382)
T PRK11128 101 IGLFNLFFSPLVPLTDALANTWQK----QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQ--AILWILTAGVASMLLG 174 (382)
T ss_pred HHHHHHHHcccccHHHHHHHHHHh----hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChh--HHHHHHHHHHHHHHHH
Confidence 454566555554444456665532 3456678888888999999999999888777633 4677777766655544
Q ss_pred hheeccCC
Q 012918 440 ATLKLPHL 447 (453)
Q Consensus 440 v~~~vpet 447 (453)
. ++.||+
T Consensus 175 ~-~~~~~~ 181 (382)
T PRK11128 175 Q-LLRPTI 181 (382)
T ss_pred H-HccCCC
Confidence 3 345654
No 211
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.29 E-value=0.004 Score=65.08 Aligned_cols=270 Identities=13% Similarity=0.093 Sum_probs=134.5
Q ss_pred hhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhhee
Q 012918 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (453)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~ 136 (453)
+...||....|+++|+++.++......+|.+++..++.. +..+ +. ..++.+.+++....++++++ .
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-----l~s~--gW------r~y~~Ln~Isl~s~~~a~~~-a 199 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-----LVTL--GW------ISYSTLNIISLVFMTFSVFL-A 199 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhc--Cc------hhHHHHHHHHHHHHHHHHHH-H
Confidence 677899999999999999999999999999998877753 1110 10 24556666777776555554 4
Q ss_pred eEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccCCCCCCCchhh
Q 012918 137 YFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSFNDGPGAV 216 (453)
Q Consensus 137 ~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (453)
++.|-+++..--+++. +.+ +.....+++.+ +.+. .+. . +..+......
T Consensus 200 ~~LP~~~~sl~f~~~~--~~~---~~~~~~~~~~~------------------~~~~-~~~----~----~~~~~~~~~~ 247 (511)
T TIGR00806 200 LFLKRPKRSLFFNRLE--DVR---GALPCELDQMV------------------PGPG-GKL----E----DYLGTCRDSF 247 (511)
T ss_pred HhCCCCchhhhhcccc--ccc---cccccccccCC------------------CCCc-ccc----c----hhhhhhhhHH
Confidence 5677433322111110 000 00000000000 0000 000 0 0000001123
Q ss_pred HHHHHHHhc---cCCHHHH-HHHHHHHHHHHhhhhhhhcccccceeeeecC-CCCCCChhhhhHHhhhhHHHHHHHHHHH
Q 012918 217 LVNLLTSLR---HLPPAMH-VVLIVMALTWLSWFPFFLFDTDWMGREVYHG-DPKGNDHEVKFYDQGVREGAFGLLLNSV 291 (453)
Q Consensus 217 ~~~~~~~~~---~~P~~l~-~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g-~p~~~~~~~~~y~~gv~~g~~~l~~~s~ 291 (453)
++.+++.++ .-|+.++ -+|++ ++-.|++-+..|.-. +++. +|+. + .||-+|.. +..+
T Consensus 248 ~~~l~~~~~~~y~n~~vl~WSlWwa--~a~~g~~qv~~Y~Q~-----LW~~v~~~~---~--~yNG~veA------~~tl 309 (511)
T TIGR00806 248 LVRMLSELVTIYRNPQLLLWSLWWV--FNSAGYYLITYYVHT-----LWGTLDESL---N--KYNGAVDA------ASTL 309 (511)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHH--HHhhHHHHHHHHHHH-----HHHHcCCCc---c--ccCCHHHH------HHHH
Confidence 344443322 2233332 34442 233344433333332 3432 2211 1 27665542 2335
Q ss_pred HHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhc
Q 012918 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (453)
Q Consensus 292 ~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (453)
.+++.++..+.+-.++.+--.+.+ .++.+...+..++.... + +.+.+.+...+++..+..+.
T Consensus 310 lga~~a~~ag~~~~~w~~~~~l~l--~v~s~~~~gll~~m~~t-~---------------~Iw~~Y~~yvlf~~~y~fli 371 (511)
T TIGR00806 310 LGAITSFIAGFVNIRWARWSKLLI--AVVSAIQAGLVFWMSQS-H---------------DIWVLYVTYVLFRGIYQFLV 371 (511)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHH--HHHHHHHHHHhhhhhcc-c---------------chHHHHHHHHHHHHHHHHHH
Confidence 566677777777333322112222 22222222222222111 1 26777788888999999888
Q ss_pred cccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhc
Q 012918 372 SVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG 410 (453)
Q Consensus 372 ~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~ 410 (453)
++--+-++..+.. +..|.-.|+=++.-.+=|-+..++
T Consensus 372 tia~~~iA~~L~~--~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 372 PIATFQIASSLSK--ELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHHHHhcc--cceEEEEecHHHHHHHHHHheEEE
Confidence 8855556665554 478999999777777777666654
No 212
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0031 Score=64.28 Aligned_cols=173 Identities=17% Similarity=0.145 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhH
Q 012918 235 LIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA 314 (453)
Q Consensus 235 ~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~ 314 (453)
..+.|..|+-|-++..+.++ .|+-+ ++ +.+ +-..+-.++..+.-++.+.+.||+|-|+.++
T Consensus 23 f~v~F~VW~l~s~l~~~i~~-----~~~LS------------~~-q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~ 83 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKS-----DFGLS------------EG-QKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTI 83 (417)
T ss_pred HHHHHHHHHHHHHHHhhhcc-----ccCCC------------HH-HHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence 34566678877777766663 23322 11 122 2223445566777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeeh
Q 012918 315 ISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIG 394 (453)
Q Consensus 315 ~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~g 394 (453)
++.++..+-.+.+.+.... +. .+..+++-.++|++=|. ..+-.+.+++.+|++ .+|..+|
T Consensus 84 ~s~~l~~IP~~~~~~a~~~---------------~~--~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~--~qG~AlG 143 (417)
T COG2223 84 LSMLLLLIPCLGLAFAVTY---------------PS--TWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKE--KQGLALG 143 (417)
T ss_pred HHHHHHHHHHHHHHHHccC---------------Cc--hHHHHHHHHHHhcccce-ehcccccccccCChh--hhhHHHH
Confidence 9998888877776666521 11 12233333334443333 233334889999986 7898899
Q ss_pred hhHHHHHHHHHHHhhccccceecccc-cchhhHhHHHHHHHHH---HHHhheeccCC
Q 012918 395 VLNLAIVIPQMIVSLGAGPWDALFGG-GNIPAFVLASLSALAG---GVVATLKLPHL 447 (453)
Q Consensus 395 i~n~~~~l~q~i~s~~~g~l~~~~g~-~~~~~f~~~a~~~lia---a~~v~~~vpet 447 (453)
+.- .-.++-.++.+++|.+...+|. ....+..++.+..+++ +++...-.||.
T Consensus 144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~ 199 (417)
T COG2223 144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH 199 (417)
T ss_pred Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 875 4444444444555555555541 0111334444444443 33344457774
No 213
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.22 E-value=0.0034 Score=63.96 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhh----HHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVW----AISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~----~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (453)
.+..+.+...+.+.+.+++.||+|||+.. ..+..++.+ .+.. .. + +.+..++..
T Consensus 44 ~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-----~~~~-~~-~---------------~~~~l~~~~ 101 (382)
T TIGR00902 44 LIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-----AFSA-GA-H---------------NAWLLFIAI 101 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-----HHHH-hh-h---------------hHHHHHHHH
Confidence 34456777788888899999999985432 222212211 1111 00 1 133333444
Q ss_pred HHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHH
Q 012918 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLS 432 (453)
Q Consensus 361 ~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~ 432 (453)
.+.|..++....+..++..+. + |++|..+|.......++.++.+...|.+.+..|-. ..|.+.++.
T Consensus 102 ~l~~~~~~~~~p~~~al~~~~-~---~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~--~~f~~~~~~ 167 (382)
T TIGR00902 102 GLFALFFSAGMPIGDALANTW-Q---KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ--NILAILTAG 167 (382)
T ss_pred HHHHHHHccchhHHHHHHHHH-H---HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh--HHHHHHHHH
Confidence 456666666555544555443 2 35677899999999999999999999988877733 356665544
No 214
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.20 E-value=0.0029 Score=69.02 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCceeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc-----ccccccccc
Q 012918 31 GTRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG-----SWHRWFPFL 105 (453)
Q Consensus 31 ~~~~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~-----~~~~~~~~~ 105 (453)
..+.+...+.++|-.+..++.-..+..-..||-|.+.+++-..-.++...|..+|=++||++|++. |+. .-+..
T Consensus 231 ~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~ 309 (735)
T KOG3626|consen 231 ESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIG 309 (735)
T ss_pred cCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCC
Confidence 444445567788899999999999999999999999999999999999999999999999999762 331 00111
Q ss_pred cchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecc
Q 012918 106 TSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEV 142 (453)
Q Consensus 106 ~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~ 142 (453)
++..-..--+.|-.-|++...++++..+. +++.|..
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p-~f~fPk~ 345 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVP-LFFFPKE 345 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHH-HHhCccc
Confidence 11100000135666688888887666554 5556544
No 215
>PTZ00207 hypothetical protein; Provisional
Probab=97.20 E-value=0.0061 Score=65.87 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred chhhHHHHhcCCCccchhhHHHHHHHHHHhhhhH-hhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhh
Q 012918 55 QGPARALLADLSGPDQRNSANAIFCSWMAVGNIL-GFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCAL 133 (453)
Q Consensus 55 ~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~il-gy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~ 133 (453)
..+....+.+..| ++||++.++...+.++|+.+ +.+...+ + ..+|+..|++.++..++..+
T Consensus 138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l------~-----------~~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF------F-----------SDNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------HHhHHHHHHHHHHHHHHHHH
Confidence 3456778888875 78999999999999999964 3333322 0 01344444444444344444
Q ss_pred heeeEeeccc
Q 012918 134 VTIYFADEVP 143 (453)
Q Consensus 134 it~~~v~E~p 143 (453)
+...+++++|
T Consensus 200 l~~~~vr~p~ 209 (591)
T PTZ00207 200 LAIVFMRLPP 209 (591)
T ss_pred HHHhheeCCc
Confidence 5555666655
No 216
>PRK11462 putative transporter; Provisional
Probab=97.03 E-value=0.003 Score=66.42 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhhHHHhhhh----cCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHH
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRW----IGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVV 359 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~----~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (453)
.+++.-+.-++.--+.|.++|| +||||.|++ |.+.+++++..+.... + .+ +.....+ ..+.
T Consensus 50 i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p----~-~s--------~~~~~~y-~~~~ 115 (460)
T PRK11462 50 MFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP----D-LS--------MNGKMIY-AAIT 115 (460)
T ss_pred HHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC----C-CC--------cchHHHH-HHHH
Confidence 3444445566677778888886 699999985 6667766554433222 0 00 0110122 2333
Q ss_pred HHHhccchhhhccccc-hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc
Q 012918 360 FTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG 419 (453)
Q Consensus 360 ~~~~Gi~~a~~~~vP~-aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g 419 (453)
..++.+++...+ +|| +|.+|+.++. +++....+.-.....++.++++....++++..|
T Consensus 116 ~~~~~~~~t~~~-ipy~al~~~lt~d~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 116 YTLLTLLYTVVN-IPYCALGGVITNDP-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHHHHHHHHh-ccHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677777754 677 6777887765 567777888778878887787777666666555
No 217
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.99 E-value=0.0033 Score=64.06 Aligned_cols=147 Identities=19% Similarity=0.124 Sum_probs=82.1
Q ss_pred HHHHH-HHHHHHHHHHHhhhHHH-hhhhcCcchhhHHHH-HHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHH
Q 012918 281 EGAFG-LLLNSVVLGVSSFLIEP-MCRWIGSRLVWAISN-FIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASL 357 (453)
Q Consensus 281 ~g~~~-l~~~s~~~~i~s~~~~~-l~d~~grr~l~~~g~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (453)
.|.+. +.+..+..++.+-+.++ ..||+||||.|++.. ++.+++........... + + ..+. +
T Consensus 38 iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~-~------------~--~~~~-~ 101 (390)
T TIGR02718 38 LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDV-A------------G--AGWA-V 101 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcch-h------------h--HHHH-H
Confidence 44443 23445666666666655 688899999997654 33333333333221100 0 0 1111 2
Q ss_pred HHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHH
Q 012918 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGG 437 (453)
Q Consensus 358 ~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa 437 (453)
......++..++....--++..|..+.+ ..+...+.......++.++.+...+.+.+..|- ...|.+.+++.++..
T Consensus 102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~~--~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw--~~~f~~~a~l~~~~~ 177 (390)
T TIGR02718 102 GLLACASLASATQDIATDGMAAEHFNGR--TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ--RPAFLLVACVPLASL 177 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHH
Confidence 2223344444444443223444555433 456667777777778888888777777777663 357898888888777
Q ss_pred HHhheeccCC
Q 012918 438 VVATLKLPHL 447 (453)
Q Consensus 438 ~~v~~~vpet 447 (453)
+...+..||+
T Consensus 178 ~~~~~~~~~~ 187 (390)
T TIGR02718 178 VCVLWLKDRA 187 (390)
T ss_pred HHHHHcCCCC
Confidence 7665555553
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=96.99 E-value=0.0015 Score=68.00 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhh----cCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRW----IGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~----~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (453)
..+.+.-+..++...+.+.++|| +||||.|++ +.+.++++...+.... +.+ .....+-.++
T Consensus 49 ~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-----~~~---------~~~~~~~~~~ 114 (444)
T PRK09669 49 TMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-----DFG---------ATGKIIYACV 114 (444)
T ss_pred HHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-----CCC---------cchHHHHHHH
Confidence 45556667778888889999998 788788774 6666666554333221 100 0001222233
Q ss_pred HHHHhccchhhhccccc-hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc-----hhhHhHHHHH
Q 012918 359 VFTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-----IPAFVLASLS 432 (453)
Q Consensus 359 ~~~~~Gi~~a~~~~vP~-aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~-----~~~f~~~a~~ 432 (453)
...++++.+.. ..+|| ++.+|..++. ++++...+.-.....++..+++...+++...+|... ...+.+.+++
T Consensus 115 ~~~l~~~~~t~-~~ip~~al~~~~t~~~-~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii 192 (444)
T PRK09669 115 TYILLSLVYTA-INVPYCAMPGAITNDP-RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLL 192 (444)
T ss_pred HHHHHHHHHHh-hcchHHHhHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 33445666664 44555 5777877654 245555566566666667776665555555443211 1134555555
Q ss_pred HHHHHHHhheeccC
Q 012918 433 ALAGGVVATLKLPH 446 (453)
Q Consensus 433 ~liaa~~v~~~vpe 446 (453)
+++..+.+.+..+|
T Consensus 193 ~~v~~~~~~~~~~e 206 (444)
T PRK09669 193 GVVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHHhCCeEE
Confidence 55555444444443
No 219
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.96 E-value=0.0018 Score=68.17 Aligned_cols=148 Identities=11% Similarity=0.156 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhh----hcCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCR----WIGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLV 358 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d----~~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (453)
..+.+.-+..++...+.|.++| |+||||.|+. |.+.+++++..+... ++. ++.. ..+..++
T Consensus 46 ~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-----p~~--------~~~~-~~~~~~~ 111 (473)
T PRK10429 46 TLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-----HLF--------EGTA-QYVFVCV 111 (473)
T ss_pred HHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-----CCC--------CccH-HHHHHHH
Confidence 3455566777788888999999 5699888775 666666554333211 100 0010 1222333
Q ss_pred HHHHhccchhhhccccc-hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc-----hhhHhHHHHH
Q 012918 359 VFTLLGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-----IPAFVLASLS 432 (453)
Q Consensus 359 ~~~~~Gi~~a~~~~vP~-aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~-----~~~f~~~a~~ 432 (453)
...++++++... .+|| ++++|+.++. +++....+.-.....++.++++....++++.+|... .....+.+++
T Consensus 112 ~~~l~~~~~t~~-~ip~~al~~~lt~~~-~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 112 TYILWGMTYTIM-DIPFWSLVPTLTLDK-REREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHH-cchHHhhhHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 344566776664 4666 7888887544 233333444344445555555554444433333211 1233444454
Q ss_pred HHHHHHHhheeccCC
Q 012918 433 ALAGGVVATLKLPHL 447 (453)
Q Consensus 433 ~liaa~~v~~~vpet 447 (453)
.+++.+.+++.+||.
T Consensus 190 ~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 190 FIVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHHcCceec
Confidence 555555555556664
No 220
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0065 Score=64.32 Aligned_cols=143 Identities=17% Similarity=0.061 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
....+|.+..+++-++.+.+.||++..+.+....+.-++-..+...++ +....+++=.+.
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--------------------s~~~~ialr~ll 144 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--------------------SFPGLIALRFLL 144 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHH
Confidence 344556677888888999999999966665554333332222222222 133444555566
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc----cchhhHhHHHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG----GNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~----~~~~~f~~~a~~~liaa~~ 439 (453)
|+.-++..-.--++++..+.++ .+|+-+|+++.+..++|++.+++...+.+.-|. +.++.|++-|++++..+++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~--e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKS--ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHhcccchHHHHHHHhhcChh--hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 6666653333335778888776 789999999999999999999988776432221 1357899999999999998
Q ss_pred hheeccCCC
Q 012918 440 ATLKLPHLS 448 (453)
Q Consensus 440 v~~~vpet~ 448 (453)
+++.+|+-.
T Consensus 223 ~f~~lp~~P 231 (495)
T KOG2533|consen 223 VFFFLPDNP 231 (495)
T ss_pred EEEEecCCh
Confidence 888888543
No 221
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.85 E-value=0.0019 Score=54.44 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=62.6
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHH
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLV 123 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i 123 (453)
..+..++.........+++.|..|+++|++++++.+....+|..++..+.... . + ..+|++.|.+
T Consensus 58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~----~------~~~~~~~~~~ 122 (141)
T TIGR00880 58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL-----A----Q------FLGWRAPFLF 122 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH-----h----c------ccchHHHHHH
Confidence 34556666677778889999999999999999999999999999988777641 1 0 1257888888
Q ss_pred HHHHHHHHhhheeeEeec
Q 012918 124 AVVFLTLCALVTIYFADE 141 (453)
Q Consensus 124 ~~i~~~i~~~it~~~v~E 141 (453)
..+..+++.+...+..||
T Consensus 123 ~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 123 LAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHHHHHhhcCCC
Confidence 777766666655555565
No 222
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.0027 Score=67.58 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH-HH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF-TL 362 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 362 (453)
|..-+...+..++.-+...+.||+|.|++-+.|.++.+++++...+.+. .+..++.+ ..
T Consensus 85 ~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~--------------------i~~l~lt~gvi 144 (509)
T KOG2504|consen 85 WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS--------------------LWQLYLTFGVI 144 (509)
T ss_pred HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh--------------------HHHHHHHHHHH
Confidence 4444455556666677788999999999999999999999988888762 22333332 34
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
.|++.|....--..++++|+++ +++.+.|+...-..++.++-+...-.+++..|-. ..+...+.+.+-..++...
T Consensus 145 ~G~G~~~~~~paiviv~~YF~k---kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r--~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 145 GGLGLGLIYLPAVVILGTYFEK---KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR--GALLIFGGISLNVLVAGAL 219 (509)
T ss_pred hhccchhhhcchhhhhhhHhHH---HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHH
Confidence 6666665444444578889976 4666677777777777777776666677777743 3566666655555555555
Q ss_pred ecc
Q 012918 443 KLP 445 (453)
Q Consensus 443 ~vp 445 (453)
.-|
T Consensus 220 ~rp 222 (509)
T KOG2504|consen 220 LRP 222 (509)
T ss_pred cCC
Confidence 555
No 223
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=96.75 E-value=0.03 Score=59.33 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCc--chh-----hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGS--RLV-----WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVAS 356 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~gr--r~l-----~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (453)
|--.++.+..++.+-+..++=.|.++ |.. +.+|.++.+++++.+.+......+ ++.+ +.+..
T Consensus 312 ~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~--~~~~---------s~~wl 380 (493)
T PRK15462 312 MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM--YGHS---------SLPLM 380 (493)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCc---------CHHHH
Confidence 33345666666555555555444422 211 557888888887766554432111 0111 12223
Q ss_pred HHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHH-HHHHHHHhhccccc
Q 012918 357 LVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAI-VIPQMIVSLGAGPW 414 (453)
Q Consensus 357 ~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~-~l~q~i~s~~~g~l 414 (453)
+....+++++=-...-+-.++++++-|++ -+|..||+..... .++|.+.+.+.+..
T Consensus 381 ~~~~~~~t~gEl~~sPvgls~~~~laP~~--~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 381 VLGLAVMGFAELFIDPVAMSQITRIEIPG--VTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHhChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666677777788999999975 7899999987643 68888877665543
No 224
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.0067 Score=63.32 Aligned_cols=139 Identities=15% Similarity=0.234 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhHHHhhhh----cCcchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 288 LNSVVLGVSSFLIEPMCRW----IGSRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~----~grr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
+-=+.-++.--+.|.++|| +||+|.|++ |.+.+++...++.... |.+... ..+-+++...+
T Consensus 56 v~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p-----~~~~~~---------k~~ya~vtY~l 121 (467)
T COG2211 56 VARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP-----DFSMTG---------KLIYALVTYML 121 (467)
T ss_pred HHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC-----CcccCc---------chHHHHHHHHH
Confidence 3344555566667777775 699899885 6666665444333332 111011 13334445556
Q ss_pred hccchhhhccccc-hhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc-----hhhHhHHHHHHHHH
Q 012918 363 LGFPLAITYSVPF-AITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN-----IPAFVLASLSALAG 436 (453)
Q Consensus 363 ~Gi~~a~~~~vP~-aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~-----~~~f~~~a~~~lia 436 (453)
+++++.. .-+|| ++.+|+.++. +++-.-.+.=..+..+++++++.+.+++++.+|+++ .....+.++++.++
T Consensus 122 ~~l~YT~-vniPy~al~~~iT~d~-~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~ 199 (467)
T COG2211 122 LGLGYTL-VNIPYGALGPEITQDP-QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHh-eeCchhhcchhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHH
Confidence 7788876 55677 6778887764 344444555566778888999999999988877553 12233344444444
Q ss_pred HHHhhe
Q 012918 437 GVVATL 442 (453)
Q Consensus 437 a~~v~~ 442 (453)
.+++++
T Consensus 200 ~l~~~~ 205 (467)
T COG2211 200 LLFCFF 205 (467)
T ss_pred HHHHHH
Confidence 444443
No 225
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.0072 Score=63.60 Aligned_cols=134 Identities=16% Similarity=0.056 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+.+-.+..-..+..++.+.+.||+|.|+++..+.++-+++-+.+.++... ..+..+++=.+.
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------------------~~~~~~~~R~lq 138 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------------------GFYLLLVLRFLQ 138 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------------------cchhhHHHHHHh
Confidence 33444556678888999999999999999999887777665555554421 122345556778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceec-ccccchhhHhHHHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDAL-FGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~-~g~~~~~~f~~~a~~~liaa~~ 439 (453)
|++.|+....--.+.++..|.+ ++++..+++.....++.++.-.+.|.+.+. +| -..+|.+.|+++++-.+.
T Consensus 139 Gl~~g~~~pa~~~i~~~W~P~~--Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G--W~sifY~~g~~g~i~~~~ 211 (466)
T KOG2532|consen 139 GLGQGVLFPAIGSILAKWAPPN--ERSTFIAILTAGSQLGTIITMPVSGLLCESSLG--WPSIFYVFGIVGLIWFIL 211 (466)
T ss_pred HHHHhHHHhhhhceeeeECCHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC--CchHHHHHHHHHHHHHHH
Confidence 9999988887777889999987 678889999999999999998889988877 66 335899889888775543
No 226
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.22 E-value=0.046 Score=56.43 Aligned_cols=79 Identities=11% Similarity=0.200 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC-cch
Q 012918 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG-SRL 311 (453)
Q Consensus 233 ~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g-rr~ 311 (453)
+++.-+|++|..+-.+.-|.+.|..+..|++ .+.| ..+.+-.+..+++..+.+.+.||.+ +|+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~---------------~qIG-~l~a~~~~~~i~~~~~~g~~aDr~~~~~~ 69 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSG---------------TQIG-ILLAVGPLARIVSPPFWGAIADRFGSAKR 69 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---------------HHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhHHH
Confidence 4677777777777667777787765533321 1334 2344555777888888999999985 567
Q ss_pred hhHHHHHHHHHHHHHH
Q 012918 312 VWAISNFIVFACMATT 327 (453)
Q Consensus 312 l~~~g~~~~~i~l~~~ 327 (453)
++.+.+++.++.+...
T Consensus 70 ~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 70 ILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666555433
No 227
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.17 E-value=0.031 Score=56.15 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=78.0
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
+++++...+.+.+.||+|||+.-++-.++++ ...+...+ + +....++-=.+-|++.+.+
T Consensus 80 ~Ss~i~g~~~G~laD~~Grk~~cl~~cily~----~scl~k~~--~---------------~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 80 ASSAIFGTFVGSLADRYGRKKACLLFCILYS----LSCLTKHS--S---------------NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHH----HHHHHHhc--c---------------ccHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999998877444443 34444432 1 1223333335567776665
Q ss_pred ccccch-hhcccccCCCCCccee--ehhhHHHHHHHHHHHhhccccc----eecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 371 YSVPFA-ITAELTADSGGGQGLA--IGVLNLAIVIPQMIVSLGAGPW----DALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 371 ~~vP~a-Lise~~p~~~r~~G~~--~gi~n~~~~l~q~i~s~~~g~l----~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
.++.=+ ++.|... |+...+ -.++..+..+.|-+++...|.+ .+..|.++.+.|..+.++..++++++..-
T Consensus 139 fS~FEsW~V~Eh~~---~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 139 FSAFESWMVHEHNK---RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 544333 4555432 222211 1122222224444455555543 34445444567999999999999888777
Q ss_pred ccCCCCC
Q 012918 444 LPHLSSN 450 (453)
Q Consensus 444 vpet~g~ 450 (453)
=+|-.|.
T Consensus 216 W~ENyg~ 222 (354)
T PF05631_consen 216 WPENYGD 222 (354)
T ss_pred ccccCCC
Confidence 7777664
No 228
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.17 E-value=0.17 Score=52.07 Aligned_cols=79 Identities=9% Similarity=0.074 Sum_probs=55.4
Q ss_pred ccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHh
Q 012918 53 TVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (453)
Q Consensus 53 ~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~ 132 (453)
++.....+||=-.+|+++-+++.+......-+|..++.++|=+ +..+ -+.+++.+..++.....+++
T Consensus 109 a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQl-----lvs~--------~~~sy~~L~~isl~~~~~a~ 175 (412)
T PF01770_consen 109 AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQL-----LVSF--------GGVSYFQLNYISLASVSLAL 175 (412)
T ss_pred HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHh--------cCCCHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999999988888888888877743 1110 02467888888887766555
Q ss_pred hheeeEeecccCC
Q 012918 133 LVTIYFADEVPLT 145 (453)
Q Consensus 133 ~it~~~v~E~p~~ 145 (453)
++ .++.|-+++.
T Consensus 176 ~~-~~fLP~~~~S 187 (412)
T PF01770_consen 176 LI-ALFLPMPKRS 187 (412)
T ss_pred HH-HHHcCCCCcc
Confidence 54 4557765543
No 229
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.12 E-value=0.0014 Score=70.24 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=2.9
Q ss_pred eeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccc
Q 012918 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (453)
Q Consensus 34 ~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~ 95 (453)
.....+.++|-.+.-++....+.--.+||-|.+++++-..-.++...+..+|-.+||++|+.
T Consensus 138 ~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 138 SGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp --------------SSS---------------------------------------------
T ss_pred hHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence 33456778899999999999999999999999999999999999999999999999999975
No 230
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.11 E-value=0.019 Score=51.26 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH
Q 012918 281 EGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF 360 (453)
Q Consensus 281 ~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (453)
.|..++.+.-.+..+++++.|.+++++|.|+.+++|.+.+++-.+. +.. . ..+..+...
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~--~~~----~---------------~~~~l~~~s 96 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS--FFY----P---------------NSYTLYPAS 96 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHh----h---------------hHHHHHHHH
Confidence 4556666666677888899999999999999999988777642221 221 1 134455566
Q ss_pred HHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHH
Q 012918 361 TLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQM 405 (453)
Q Consensus 361 ~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~ 405 (453)
++.|++-+.+-.-.-..+.++-+++ .+++..|+.-......++
T Consensus 97 ~l~G~~~a~lW~aqg~ylt~~s~~~--~~~~~~~ifw~i~~~s~i 139 (156)
T PF05978_consen 97 ALLGFGAALLWTAQGTYLTSYSTEE--TIGRNTGIFWAIFQSSLI 139 (156)
T ss_pred HHHhhhhHHhhHhhhHHHHHcCCHH--HHhhHHHHHHHHHHHHHH
Confidence 6788888874333334555554433 445555554333333333
No 231
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.98 E-value=0.021 Score=58.97 Aligned_cols=177 Identities=17% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
..+.+....|+-.+.|-.++-|++-|++|.. | . .+...| ..+.+.++.+.+...+.+.+.||+|.
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~--G-----------L-s~~~iG-~i~s~~~~~~l~~qp~~G~i~Dklg~ 72 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA--G-----------L-SGTEIG-IIFSAGSLFALLAQPVYGFISDKLGL 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HHHHHHHHHHHHTHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-----------C-CHHHHH-HHHHHHHHHHHHHHHhHHHhcchhhh
Confidence 4444444444434444444556677765411 1 1 112333 23334566777777788899999997
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhh--ccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC-C
Q 012918 310 RLVWAISNFIVFACMATTAIISVISV--REYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS-G 386 (453)
Q Consensus 310 r~l~~~g~~~~~i~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~-~ 386 (453)
||-++....+..+ +.+..+...+.. +. + ....+++....+|+.+.....+ .|-+-++ .
T Consensus 73 kK~Ll~~i~~l~~-l~~pff~~v~~pll~~-----------n--~~lg~iig~i~l~~~f~~~~~~-----~Ea~~er~s 133 (412)
T PF01306_consen 73 KKHLLWFIAILLL-LFGPFFIYVFGPLLQS-----------N--FWLGAIIGGIYLGLVFNAGVPL-----SEAYAERVS 133 (412)
T ss_dssp CSHHHHHHHHHHH-TCHHHHHHTHHHHHHT-----------T---HHHHHHTTTTTTTTTTTHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHcccchH-----HHHHHHHHH
Confidence 7654432211111 111111111100 00 0 1222222222344444443332 3433221 3
Q ss_pred CCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 387 GGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 387 r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
|..|.+.|=.=..-.++-.+++.+.|.+.+..+ ...|+++++++++..++..+.
T Consensus 134 r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p---~~~fwi~s~~~~il~lll~~~ 187 (412)
T PF01306_consen 134 RRNGFEYGRARMWGSIGFAIASLLAGILFNINP---NIIFWIASAAAIILLLLLLLL 187 (412)
T ss_dssp HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc---cHHHHHHHHHHHHHHHHHHHc
Confidence 577888888888999999999999998886432 247898888777766655444
No 232
>PRK09848 glucuronide transporter; Provisional
Probab=95.97 E-value=0.025 Score=58.88 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhc----CcchhhH-HHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWI----GSRLVWA-ISNFIVFA 322 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~----grr~l~~-~g~~~~~i 322 (453)
..+.+..+..++...+.+.++||. ||||.|+ .+.+...+
T Consensus 48 ~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~ 91 (448)
T PRK09848 48 TMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI 91 (448)
T ss_pred HHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence 455567778888899999999986 8888775 45444433
No 233
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.011 Score=60.91 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=63.6
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
+-.++.-+..+++.||+|||++|...++++.+|-++.++-.. + +++......+.++=.++|++.|-=
T Consensus 95 vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~---~----------~~~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 95 VGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG---T----------TSPLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC---C----------CCCcchhhHHHHHHHHhhccccCC
Confidence 334556778899999999999999988888776653333221 1 001111222223336688888876
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHH
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIV 407 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~ 407 (453)
+-..-++.||+-... .+|+-++..-...-++++..
T Consensus 162 YPlSAtI~SE~an~~--~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 162 YPLSATIMSESANKK--TRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred CcchHHHhhhhhhhc--cccceeEEEEEecchhHhhc
Confidence 666666888887654 66776766555555555443
No 234
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.90 E-value=0.046 Score=57.62 Aligned_cols=87 Identities=14% Similarity=-0.006 Sum_probs=58.0
Q ss_pred HHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 359 VFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 359 ~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
++.+.+++.+.....-=+++.|..+++++..+...+..-.+..++.++.+.+.|.+.+..|- ..+|.+.+++.++. +
T Consensus 126 ~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~--~~~f~~~a~l~ll~-~ 202 (468)
T TIGR00788 126 FIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLT--RILFLITAALLLLQ-L 202 (468)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHH-H
Confidence 45567777777776667889999883322333333343334457888888888888777663 34788888877777 4
Q ss_pred HhheeccCCC
Q 012918 439 VATLKLPHLS 448 (453)
Q Consensus 439 ~v~~~vpet~ 448 (453)
+...++||.|
T Consensus 203 ~~~~~~~E~~ 212 (468)
T TIGR00788 203 FVSNLSKERR 212 (468)
T ss_pred HHHHhccccc
Confidence 4567788865
No 235
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.075 Score=54.17 Aligned_cols=107 Identities=7% Similarity=-0.064 Sum_probs=73.2
Q ss_pred HHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 291 VVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
...++.+++.+.+.||+|.|+-.++|+.+++++.....=+... . .....++.....|.+.+..
T Consensus 59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~--~---------------~y~~FL~~lFila~Gi~~L 121 (422)
T COG0738 59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS--K---------------SYGFFLVALFILASGIGLL 121 (422)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--h---------------hHHHHHHHHHHHHhhhHHH
Confidence 3567789999999999999999999999999877544322211 1 1333333334456666666
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
.+--=.+++..-|++ ....-+.+...++.+++++.+++.+.++.
T Consensus 122 etaaNp~v~~lg~~~--~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 122 ETAANPYVTLLGKPE--SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HhccchHHHHhCCch--hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555445677777653 33444788888999999998887776554
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.074 Score=53.54 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=89.9
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
..+.+...+++.+|+|.++...++.++.+++.. +... ......+....+.|.+.|+.+.
T Consensus 60 fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~----iR~~-----------------~~~~~L~~gt~l~G~gIav~nV 118 (395)
T COG2807 60 FGLFAPAAPRLARRFGEERSLFLALLLIAAGIL----IRSL-----------------GGLPLLFLGTLLAGAGIAVINV 118 (395)
T ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHH----HHhc-----------------ccHHHHHHHHHHHHhhHHHHHH
Confidence 345577889999999999998887666554332 2211 0144556667778888888888
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHH
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGV 438 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~ 438 (453)
+-=++|.+.+|+ ..|..+|+++.+..+++.+++....++.+..++ -...+.+=++.++++.+
T Consensus 119 LLPslIK~~Fpk---~~~~mtglYs~sl~~~aaLaa~lavpla~~~~g-W~~aL~~WAl~allAl~ 180 (395)
T COG2807 119 LLPSLIKRDFPK---RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGG-WRGALGFWALLALLALL 180 (395)
T ss_pred hhhHHHHhhccc---chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc-HHHHHHHHHHHHHHHHH
Confidence 777888899986 589999999999999999999999998876632 34456666777776654
No 237
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.52 E-value=0.15 Score=52.62 Aligned_cols=146 Identities=11% Similarity=0.034 Sum_probs=96.0
Q ss_pred HHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHH
Q 012918 238 MALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISN 317 (453)
Q Consensus 238 ~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~ 317 (453)
+-+||+.|-+...|...|.| + . ...-|-..+|-++++...+...++.||+|.|....+|.
T Consensus 57 N~~qWI~ya~i~n~~~~~Yg------s-----------~---~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 57 NGMQWIQYAPINNYVNSFYG------S-----------S---SAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred CcchheeehhHHHHHHHHhc------c-----------h---HHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 34678888877777776533 1 1 23447888899999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhH
Q 012918 318 FIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLN 397 (453)
Q Consensus 318 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n 397 (453)
...+++-..=.+.. .+ .++ +....-.+..--+..+.+...+..+|--+-+-.+|.++|..+...|+
T Consensus 117 ~ln~iGa~Ir~iss----~p-------~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v-- 182 (480)
T KOG2563|consen 117 VLNGIGAWIRLISS----LP-------FVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGV-- 182 (480)
T ss_pred HHHHHHHHHhhhcc----Cc-------ccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHH--
Confidence 77766443222111 10 000 11111234445566778888888999888888899876666655555
Q ss_pred HHHHHHHHHHhhccccceec
Q 012918 398 LAIVIPQMIVSLGAGPWDAL 417 (453)
Q Consensus 398 ~~~~l~q~i~s~~~g~l~~~ 417 (453)
+.+.++-.+..++-+.++..
T Consensus 183 ~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 183 MGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hcchHHHHHHhhccceecCC
Confidence 55556655555555555544
No 238
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.64 E-value=0.22 Score=51.04 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=83.2
Q ss_pred hhhHHHhhhhcC-----cchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhh
Q 012918 297 SFLIEPMCRWIG-----SRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 297 s~~~~~l~d~~g-----rr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~ 370 (453)
-...+..+|+.+ ||..|+. |...++.+...+.+......+... ..-.+.+.......+.+.++|++.+..
T Consensus 31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~----~~~~~~~~g~~~a~l~F~l~G~G~~~s 106 (403)
T PF03209_consen 31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ----QSSGPFWLGLALAALAFLLYGLGVHAS 106 (403)
T ss_pred HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc----ccccccHHHHHHHHHHHHHHHhhHhHh
Confidence 456678899998 9999996 666666666555554433211000 001124455666777888899999998
Q ss_pred ccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc
Q 012918 371 YSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (453)
Q Consensus 371 ~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~ 418 (453)
.+-=.+|++|..|++ ++++..++.-++.-++-++.+.+.|.+++-+
T Consensus 107 ~T~~lALl~D~~~e~--~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~ 152 (403)
T PF03209_consen 107 GTSFLALLADLAPEE--RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF 152 (403)
T ss_pred HHHHHHHHHhcCCHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 888889999999986 5677799999999899888888888877654
No 239
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.46 E-value=1.8 Score=45.57 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=19.9
Q ss_pred hHHHHhcCCCccchhhHHHHHHHHHHhhhhHhh
Q 012918 58 ARALLADLSGPDQRNSANAIFCSWMAVGNILGF 90 (453)
Q Consensus 58 ~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy 90 (453)
.+---.-+..+|.++.|+..++.-.+.|-+++|
T Consensus 139 VDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~ 171 (544)
T PF13000_consen 139 VDGWALTMLSPENVGYASTCQTVGQTAGYFLSF 171 (544)
T ss_pred eehhhhhhcChhhcchHHHHHHhHhhhhHHHHH
Confidence 333444455678888888887555555544444
No 240
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=93.41 E-value=0.63 Score=49.25 Aligned_cols=39 Identities=5% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFA 322 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i 322 (453)
+...+..++.++.+.+++-+.|+-|+||.++......++
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~ 112 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGV 112 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 344455566666677788899999998888865444443
No 241
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.20 E-value=0.21 Score=52.17 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=79.0
Q ss_pred hhHHHhhhhc---C-cchhhHH-HHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 298 FLIEPMCRWI---G-SRLVWAI-SNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 298 ~~~~~l~d~~---g-rr~l~~~-g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
.+.+.++|.+ | |||-|++ |.++.+++.+..+..... . . ....+.+++.+..++.+....
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--~------------~--s~~~~~~~l~la~~g~a~~DV 105 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--E------------S--SAAIAVVLLFLASFGYAFADV 105 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--c------------c--hhhhHHHHHHHHHHHHHHHHH
Confidence 3566778886 3 5666664 554444333333333210 0 0 011222333334455555555
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccC
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPH 446 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpe 446 (453)
+-=+++.|.-..+.+.+|.-.+....+..++.++.+...|++.+..+.. ..|.+++.+.++..+.+.+..+|
T Consensus 106 ~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~--~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 106 AADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQ--GVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCe--EEehHHHHHHHHHHHHHHHhhhh
Confidence 5556777887655444565566666677788888888889888876643 57888888888887777677776
No 242
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=91.58 E-value=1.6 Score=42.04 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=66.8
Q ss_pred hhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccch
Q 012918 297 SFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFA 376 (453)
Q Consensus 297 s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~a 376 (453)
+++.|.+.||+|.+.+..+|.+...+++........ + . ++++. .+.+.+++.+.|.+-+-.++.-..
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~---~----~----i~~~~--~~~~~~~~~l~~~s~~~~~ta~lv 119 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS---G----R----IPSLP--VWLMCLFLFLGGNSSCWFNTASLV 119 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh---C----c----cCccc--hHHHHHHHHHHcccHHHhhhHHHH
Confidence 678899999999999999998888888876665542 1 0 11111 333333444444443333343222
Q ss_pred hhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccccee
Q 012918 377 ITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDA 416 (453)
Q Consensus 377 Lise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~ 416 (453)
-..+-+|+ .+|+..|+.-.+..++-.+-+.+.-.+.+
T Consensus 120 t~~~NFP~---~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 120 TCVRNFPR---SRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHhCcc---ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 33466775 57999999999999988887776655543
No 243
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=90.86 E-value=0.48 Score=44.40 Aligned_cols=113 Identities=21% Similarity=0.159 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+...+.+++.||.|||+.+..+...+.++.....+... + .....++.....
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~ 104 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---V---------------GLALLLILRLLQ 104 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---c---------------hHHHHHHHHHHH
Confidence 4445555666666789999999999998888876653333222222221 0 123333333447
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHH-HHHHHHHHHhhccccce
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNL-AIVIPQMIVSLGAGPWD 415 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~-~~~l~q~i~s~~~g~l~ 415 (453)
|++.+.......++++|..|. .+.++...+.... ...++.++.+...+.+.
T Consensus 105 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 105 GLGGGGLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HhhhHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887778888899999986 1146666777666 45566666664444443
No 244
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=90.27 E-value=2.2 Score=43.06 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc--cc-------h
Q 012918 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG--GN-------I 423 (453)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~--~~-------~ 423 (453)
.+...+...+++..+..+.+|--+-+++-+.+ |..|.-.|+-++..-+-|-+..+ ..++..|- +. .
T Consensus 326 Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~--e~~gLvFGiNTFvAl~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~ 400 (433)
T KOG3810|consen 326 IWVCYAGYVLFRVIYQLTITIATFQIARNLSS--ELFGLVFGINTFVALILQSILTL---IVVDDRGLGLDIRTQFVVYS 400 (433)
T ss_pred eehhhhhHHHHHhhHhhhhhHHHHHHHHhhhh--hhheeeeehHHHHHHHHHHhheE---EEEcccccCCCcceeEEEEe
Confidence 44455666677777777777755555665654 48999999955554445544433 34442221 10 1
Q ss_pred hhHhHHHHHHHHHHHHh
Q 012918 424 PAFVLASLSALAGGVVA 440 (453)
Q Consensus 424 ~~f~~~a~~~liaa~~v 440 (453)
.-|.+-|++.++++.+.
T Consensus 401 ~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 401 SYFIVLGVIFLIGFGIE 417 (433)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 13777788888876643
No 245
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=89.94 E-value=0.96 Score=46.01 Aligned_cols=128 Identities=20% Similarity=0.123 Sum_probs=77.6
Q ss_pred HHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhcc
Q 012918 293 LGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYS 372 (453)
Q Consensus 293 ~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~ 372 (453)
-.+.+..-+.+.|++|||+.+.+...... ..+++. +.+++ ....+++-++.|++.|. ..
T Consensus 126 mllga~~w~l~~d~~grr~~f~~T~l~t~----v~~~is-------------~~spn---f~~L~~f~~l~~~g~gg-~p 184 (528)
T KOG0253|consen 126 MLVGAMVWGLSADTIGRRKGFNLTFLVTG----VFGVIS-------------GASPN---FASLCVFRALWGFGVGG-LP 184 (528)
T ss_pred hhhhhhhhheehhhhhcchhhhhhHHHHH----HHHHhh-------------cCCCC---eehhhHHHHHHhccCCC-cc
Confidence 45566777888999999998877543332 223332 11112 22344566777777777 55
Q ss_pred ccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 373 VPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 373 vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+.-++=.|..|..+ ++.-+ ++..+-.++|+...++.=.+...+| -++..+..++-..+.+++. +.+||.
T Consensus 185 v~~~~yle~lp~~~--r~~~~-V~~~~waig~v~ea~law~vm~~~g--wr~~l~~~~~pl~~~a~f~-~w~~ES 253 (528)
T KOG0253|consen 185 VDSAIYLEFLPSSH--RWLLT-VMSFFWAIGQVFEALLAWGVMSNFG--WRYLLFTSSTPLMFAARFL-VWVYES 253 (528)
T ss_pred HhHHHHHHhccCcC--CCcch-hHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHhHHHHHHHHH-hhcccC
Confidence 55677889999873 44333 3335666677777665544445555 3455666667677777654 567775
No 246
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=89.62 E-value=3.1 Score=43.97 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCc-chhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGS-RLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~gr-r~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
+....+++..++.+.+-+.+..|.+. |+.++.|.+++.++-+.-..+...+. ...+.+++.=.+
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~---------------~~~y~mL~~R~l 139 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN---------------GVKYLMLVARIL 139 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc---------------chHHHHHHHHHH
Confidence 45556888899999999999988875 77778888888777765433332221 136667777788
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhc---cccce-ec--------ccccchhhHhHHH
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLG---AGPWD-AL--------FGGGNIPAFVLAS 430 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~---~g~l~-~~--------~g~~~~~~f~~~a 430 (453)
.|++.+.. .+-.+.++...-.++|.+. ++..+....+++++.+.. +++|- +. +..+ +..-++.+
T Consensus 140 ~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA--~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~Y-Tap~w~m~ 215 (488)
T KOG2325|consen 140 TGVGVGNF-AVLRAYIADASTVEDRPRA--FAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMY-TAPAWLMA 215 (488)
T ss_pred cCcCcccH-HHHHHHHHhccCccchHHH--HHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEec-chHHHHHH
Confidence 99988763 3434555554333334444 555556666666654421 22221 11 1222 23466677
Q ss_pred HHHHHHHHHhheecc
Q 012918 431 LSALAGGVVATLKLP 445 (453)
Q Consensus 431 ~~~liaa~~v~~~vp 445 (453)
+.+++..++...++.
T Consensus 216 i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHHHHHHHhhee
Confidence 777777776655444
No 247
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=89.31 E-value=1.9 Score=45.11 Aligned_cols=114 Identities=8% Similarity=0.066 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+-.+...+.+++..+...++..|+..|.=...++++..+..+.+..+... + . +.+...+..++.+.+.
T Consensus 49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~--~-~---------~~~~~f~~~~~~v~~~ 116 (437)
T TIGR00939 49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKV--Q-T---------SETGFFVTTMASVVII 116 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeee--c-C---------CcchHHHHHHHHHHHH
Confidence 44445555666666677777788766433344544443333333222111 0 0 0222345566667778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~ 409 (453)
|++-|....--+++.+..-|+-....-...|+..+..++.+++.-.
T Consensus 117 g~~~~~~q~s~~gla~~fp~~~~~a~~~G~g~aGv~~s~~~ii~~a 162 (437)
T TIGR00939 117 NSGMALLQGSLFGLAGVFPSTYSSAVMSGQGLAGVLTSLAMILVKA 162 (437)
T ss_pred HhhhhhhcccchhhcccCCHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8988888888888877443321111111234444555566666544
No 248
>PF12832 MFS_1_like: MFS_1 like family
Probab=88.47 E-value=1.4 Score=34.26 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhh
Q 012918 234 VLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVW 313 (453)
Q Consensus 234 l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~ 313 (453)
+.+..|+-+.+.-++.=|.+-|..+..++ .. +.| ....+..++.++++.+.+.++||.++++..
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~-----------~~----~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLS-----------PS----QIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCC-----------HH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 34445555555555666667665442221 11 233 333455677888899999999999999887
Q ss_pred HHH
Q 012918 314 AIS 316 (453)
Q Consensus 314 ~~g 316 (453)
...
T Consensus 69 l~~ 71 (77)
T PF12832_consen 69 LLG 71 (77)
T ss_pred HHH
Confidence 664
No 249
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=86.63 E-value=3.7 Score=45.29 Aligned_cols=140 Identities=9% Similarity=-0.012 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhHHHhhhh-cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccc
Q 012918 288 LNSVVLGVSSFLIEPMCRW-IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFP 366 (453)
Q Consensus 288 ~~s~~~~i~s~~~~~l~d~-~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~ 366 (453)
.+...+-+..++++.+.|+ +|+++...++.+++.+++..+.+... ... . ........++.+++..+|
T Consensus 31 ~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~-----~------~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 31 TFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS-----G------HPLHDLLDLLGLALIALG 98 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc-----c------cchHHHHHHHHHHHHHhh
Confidence 3445566678888899987 49999988888888877765544221 000 0 000122344556666777
Q ss_pred hhhhccccchhhcccccCCCC-CcceeehhhHHHHHHHHHHHhhccccceecc---ccc--chhhHhHHHHHHHHHHHH
Q 012918 367 LAITYSVPFAITAELTADSGG-GQGLAIGVLNLAIVIPQMIVSLGAGPWDALF---GGG--NIPAFVLASLSALAGGVV 439 (453)
Q Consensus 367 ~a~~~~vP~aLise~~p~~~r-~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~---g~~--~~~~f~~~a~~~liaa~~ 439 (453)
.|..-...-++.++.++++++ .+-....++..++.++.+++..+.+.+.+.. |.+ ....|.+.+++.+++.+.
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 777667666788888765321 2222233333344444444555555444222 211 123577777766666543
No 250
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=85.46 E-value=6.9 Score=40.46 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHH-HHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACM-ATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+..+..+..++-+-+++.++|+-|+||-++......++.. .++.++. +. -.++..++++++.
T Consensus 63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~----~~-------------s~~~~~l~~~il~ 125 (438)
T COG2270 63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP----PG-------------SYLLLLLLFLILA 125 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC----CC-------------chHHHHHHHHHHH
Confidence 3344556666677888999999999988886544444333 3444443 10 0245555666667
Q ss_pred ccchhhhccccchhhcccccCC--CCCcceeehhhHHHHHHHHHHH--hhc----cccce------ecccccchhhHhHH
Q 012918 364 GFPLAITYSVPFAITAELTADS--GGGQGLAIGVLNLAIVIPQMIV--SLG----AGPWD------ALFGGGNIPAFVLA 429 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~--~r~~G~~~gi~n~~~~l~q~i~--s~~----~g~l~------~~~g~~~~~~f~~~ 429 (453)
.+++...+..=-+++.+..+++ +|..|..-+.=+.-..++.+.+ ... .+.-. .+.|....-++.++
T Consensus 126 ~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~ 205 (438)
T COG2270 126 SIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLA 205 (438)
T ss_pred HHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHH
Confidence 7776665555557888887764 2322222222222222222221 111 11111 12233334457777
Q ss_pred HHHHHHHHHHhheeccCCC
Q 012918 430 SLSALAGGVVATLKLPHLS 448 (453)
Q Consensus 430 a~~~liaa~~v~~~vpet~ 448 (453)
|+--++-++=.++.+|+..
T Consensus 206 A~W~li~~iPm~~~v~~~~ 224 (438)
T COG2270 206 ALWWLLFALPMILNVHDAE 224 (438)
T ss_pred HHHHHHHHhHHHhcccccc
Confidence 7777776665566666543
No 251
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=85.14 E-value=16 Score=37.65 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccc
Q 012918 353 KVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPW 414 (453)
Q Consensus 353 ~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l 414 (453)
.+.+++++..-|+.=|..+.--|..+.|..|+++|+.+ ||...+...++-.+++++.-++
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFs--lg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFS--LGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 45566667777877777777778888988887655555 9998899988888887765333
No 252
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=82.02 E-value=1.3 Score=47.10 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=72.2
Q ss_pred HHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhc
Q 012918 300 IEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITA 379 (453)
Q Consensus 300 ~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLis 379 (453)
..++++|+|+-+++.+++..+++=++...... | +|.++-+=.+-|+..|.+.|.--+.++
T Consensus 426 s~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~----n----------------~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 426 SFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ----N----------------PWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred HHHHHHHhcccceeeehhhHHHHHHHHHHHhc----C----------------chheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999998888777665443333222 2 555555666778887777666666778
Q ss_pred ccccCCCCCcceeehhhH-HHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHH
Q 012918 380 ELTADSGGGQGLAIGVLN-LAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVV 439 (453)
Q Consensus 380 e~~p~~~r~~G~~~gi~n-~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~ 439 (453)
+..|.+.| .+.-|++. .+..++--+.+++.|.+++.+|.. ..|..+++.+++..+.
T Consensus 486 ~vaPp~l~--at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~--ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 486 HVAPPGLR--ATAQGLLQGIFHGLGKGLGSLIGGFVVERFGAR--TTFRIFGIACLVTLAL 542 (618)
T ss_pred hhCCCcch--HHHHHHHHHHhcccCcchhhhhhhhhheeehhH--HHHHHHHHHHHHHHHH
Confidence 88886522 21122211 122334445677888888888843 5788888877765443
No 253
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=81.21 E-value=29 Score=36.30 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHH-----HHh
Q 012918 289 NSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVF-----TLL 363 (453)
Q Consensus 289 ~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 363 (453)
-++....++++.|++.+|+|..|.=..|.....+|+... +...+...+. .+.......+..+ .++
T Consensus 302 gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~-v~~~~~~~~~---------~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 302 GAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALC-VVSFWAPGSP---------FSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH-HHHHhcCCCC---------chhhHHHHHHHHHHHHHHHHH
Confidence 445667778999999999999888777777776665433 2222211100 0111222222222 233
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhh
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~ 409 (453)
++-.+... ++=|..|++ .+|+..|+.+....+..++.-.
T Consensus 372 ~fDL~~~q-----i~Qe~V~~~--~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 372 SFDLAVTQ-----IMQENVPES--ERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred hhhHHHHH-----hhcccCCHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 33333322 456667765 6888888888888877766543
No 254
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=80.03 E-value=35 Score=35.22 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcc
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSA 92 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~i 92 (453)
..+.+++|-+..-....+..-..+..+|+-|-|+..++.-...|..+|+.+
T Consensus 138 ~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 138 LLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 344567776666667777777888899999999999866666665555533
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=80.01 E-value=23 Score=37.45 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHhhcccccch-hhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcc
Q 012918 46 LLDLANNTVQG-PARALLADLSGPDQRNSANAIFCSWMAVGNILGFSA 92 (453)
Q Consensus 46 lld~a~n~~~~-p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~i 92 (453)
....-.+.+-+ -.-++..|++.+||-.|-+++.....++|.++|-.+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554 788999999999999999999999888888886543
No 256
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.09 E-value=51 Score=34.73 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=56.7
Q ss_pred HHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCC---CchhHHHHHHHHHHHhccchhhhccccchh
Q 012918 301 EPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIG---ANQAIKVASLVVFTLLGFPLAITYSVPFAI 377 (453)
Q Consensus 301 ~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aL 377 (453)
.+-+|++||+++..++..+..+..++..+.. + +|.+-...+..+ ++ .....+++-.++|++=++.++.=+.+
T Consensus 303 ~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p-~dap~~~t~~~~~~~~~--~~~~~~ii~~l~G~~D~~~~t~~~~i 377 (461)
T KOG3098|consen 303 SKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--P-NDAPLRPTDSPPLLFTP--SYYLALIIGFLLGFGDACFNTQRYVI 377 (461)
T ss_pred hhhhhhcccCcchhHHHHHHHHHHHHHhccc--c-ccCCCCCCccccccccc--chhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344667999988887665554443332221 1 222100000000 11 13355666778999999999999999
Q ss_pred hcccccCCCCCcceeehhhHHHHHHHHHHHhh
Q 012918 378 TAELTADSGGGQGLAIGVLNLAIVIPQMIVSL 409 (453)
Q Consensus 378 ise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~ 409 (453)
++.+.|++ +....++.-+...++.-++..
T Consensus 378 i~~~~~~~---~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 378 IALLYPDD---RAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHHHhcCc---hHHHHHHHHHHHHHHHHHHhh
Confidence 99999764 333455555555555444333
No 257
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=77.93 E-value=4.6 Score=40.90 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred CceeehhHHHHHHHHHhhcccccchhhHHHHhcCCCcc---chhhHHHHHHHHHHhhhhHhhccccccccccccccccch
Q 012918 32 TRTRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPD---QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSR 108 (453)
Q Consensus 32 ~~~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~---qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~ 108 (453)
++.+...+..+|+.++-++....-.-..++++|..+++ +|.+.++|+=..+++|.++++.+.... .+
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i--~~-------- 97 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYI--QQ-------- 97 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHH--HH--------
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhh--cc--------
Confidence 34556778889999999999999999999999999875 478899999999999999998666541 11
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhhhee
Q 012918 109 ACCAACGNLKAAFLVAVVFLTLCALVTI 136 (453)
Q Consensus 109 ~~~~~~~~~r~~f~i~~i~~~i~~~it~ 136 (453)
...|.+-|.++.+.+++++++.+
T Consensus 98 -----~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 98 -----NYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp -----CS-HHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccchhhhhhHHHHHHHHHHHHHH
Confidence 13688889999988876665433
No 258
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=72.84 E-value=13 Score=39.80 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=38.0
Q ss_pred cccccchhhHHHHhcCCCccchhhHHHHHHHHH-HhhhhHhhccccc
Q 012918 50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWM-AVGNILGFSAGAS 95 (453)
Q Consensus 50 a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~-~lG~ilgy~ig~~ 95 (453)
+..++.+.+-+|+++++||+-|..+.++.+.+- |+|--+|.++|+.
T Consensus 472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 445567788899999999999999999887665 8888888888876
No 259
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.85 E-value=23 Score=37.22 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
+..+.-....++.+..|.+++++|.|..+++|...+..-.++..+. | .+-..+.-++.|
T Consensus 55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-----N----------------~y~~yfssallG 113 (461)
T KOG3098|consen 55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-----N----------------SYYLYFSSALLG 113 (461)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-----c----------------hHHHHHHHHHhh
Confidence 3444444667778899999999999999999887776655443332 2 445666778899
Q ss_pred cchhhhccc
Q 012918 365 FPLAITYSV 373 (453)
Q Consensus 365 i~~a~~~~v 373 (453)
++.|. .|.
T Consensus 114 ~Gaal-lw~ 121 (461)
T KOG3098|consen 114 FGAAL-LWT 121 (461)
T ss_pred hhHHh-eec
Confidence 99885 454
No 260
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=69.44 E-value=50 Score=34.24 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcc
Q 012918 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (453)
Q Consensus 231 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr 310 (453)
...+|+-.|+.++ -|-.=|.++|..+ |..|-++++..++-.-.+ -|+ ....-++.-.+.|.+|-|
T Consensus 7 ~~llc~~gf~~~f--rPsEPfl~~yL~~------~~kn~T~~qv~~~i~Pv~-----tYS--yl~~l~~vflltd~l~Yk 71 (412)
T PF01770_consen 7 TLLLCLFGFFKEF--RPSEPFLTPYLTG------PDKNFTEEQVNNEIYPVW-----TYS--YLAFLLPVFLLTDYLRYK 71 (412)
T ss_pred HHHHHHHHHHHhc--CCCCccchHHHcC------CccCCCHHHHHHhhhhHH-----HHH--HHHHHHHHHHHHHHhhhh
Confidence 3445666666553 3444455665322 211222333444422222 222 333456677889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhh
Q 012918 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAI 369 (453)
Q Consensus 311 ~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~ 369 (453)
++.+++.+...+...++.+.. .+..+-+.-.++|++.++
T Consensus 72 pviil~~~~~i~t~~lll~~~--------------------sv~~mq~~q~~yg~~~a~ 110 (412)
T PF01770_consen 72 PVIILQALSYIITWLLLLFGT--------------------SVLAMQLMQFFYGLATAA 110 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHC--------------------cHHHHHHHHHHHHHHHHH
Confidence 999987655554444333332 256667777888888886
No 261
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=65.94 E-value=76 Score=33.79 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=28.3
Q ss_pred hhHHHHhcCCCccchhhHHHHHHHHHHhhhhHh
Q 012918 57 PARALLADLSGPDQRNSANAIFCSWMAVGNILG 89 (453)
Q Consensus 57 p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilg 89 (453)
-.-.+..|+++.||-.|-+.......++|.+++
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~s 196 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFS 196 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999988888888764
No 262
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=65.26 E-value=19 Score=35.63 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=58.1
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAF 121 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f 121 (453)
++..++.++-...-...--.++-++|++|.|.+++..|...++|-..-.++.++. .++- .+..|-..|
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i---------~d~~---g~y~~le~f 424 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI---------ADGD---GSYDNLEAF 424 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee---------ecCC---CchhhHHHH
Confidence 4555666666555555666778889999999999999999999977766665541 1110 012344455
Q ss_pred HHHHHHHHHHhhheeeEeecccC
Q 012918 122 LVAVVFLTLCALVTIYFADEVPL 144 (453)
Q Consensus 122 ~i~~i~~~i~~~it~~~v~E~p~ 144 (453)
.++...+.+.....++.+..+++
T Consensus 425 fl~~~~~aL~svgil~~~N~kq~ 447 (459)
T KOG4686|consen 425 FLIIGLMALTSVGILFYLNKKQS 447 (459)
T ss_pred HHHHHHHHHHHHHHHhheecccc
Confidence 56555555555555666655443
No 263
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=63.27 E-value=1.3e+02 Score=31.51 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhh-HHHHHHHHHHHHHHHHhhhHHHhhhhcC
Q 012918 230 AMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVR-EGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (453)
Q Consensus 230 ~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~-~g~~~l~~~s~~~~i~s~~~~~l~d~~g 308 (453)
..+.+++.||++-.|-=...+-.+-|+.+ +|.+. .. .+.++ +.-+++.++.+-..|+++||..
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~-i~p~s--------------Ll~~siyg-l~~~~~~~~f~~~vG~~iD~~~ 66 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLIS-IFPGS--------------LLPVSIYG-LVRSLSAILFGPWVGRWIDRSP 66 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC--------------cHHHHHHH-HHHHHHHHHhhHHHHHHHhCCc
Confidence 45678888888755443333333333332 44432 12 22223 3334566666777889999999
Q ss_pred cchhhHHHHHHHHHHH
Q 012918 309 SRLVWAISNFIVFACM 324 (453)
Q Consensus 309 rr~l~~~g~~~~~i~l 324 (453)
|.+..-.+.+..-++.
T Consensus 67 Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 67 RLKVIRTSLVVQNLSV 82 (432)
T ss_pred chhhHHHHHHHHHHHH
Confidence 9887666655444444
No 264
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=60.80 E-value=13 Score=28.79 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecccC
Q 012918 70 QRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEVPL 144 (453)
Q Consensus 70 qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~p~ 144 (453)
-|.++.-+.+....+++++++++|++. .+++.++++-++-.++++++ .+|+=|.
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~------------------q~~~~~~~~~~~g~~~~~lv---~vP~Wp~ 58 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYIT------------------QSFSYTFYIYGAGVVLTLLV---VVPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhh---eeCCcHh
Confidence 466788899999999999999999751 36777777666665555443 4565443
No 265
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.19 E-value=14 Score=29.70 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHhhhhHhhccccc
Q 012918 70 QRNSANAIFCSWMAVGNILGFSAGAS 95 (453)
Q Consensus 70 qr~~a~~~~~~~~~lG~ilgy~ig~~ 95 (453)
-|+++--++++...+|+++|++.|+.
T Consensus 20 gQkkaEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 20 GQKKAERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999964
No 266
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=56.26 E-value=22 Score=39.31 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=65.8
Q ss_pred eeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccc---hhhHHHHHHHHHHhhhhHhhccccccccccccccccchhh
Q 012918 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQ---RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRAC 110 (453)
Q Consensus 34 ~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~q---r~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~ 110 (453)
++...+..+|+.+.-++...+-....++..|..+++| |.+.+.|+-..+++|++++..+-... .+ ...
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l--~~-------~~~ 152 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPIL--RG-------DVG 152 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------hhc
Confidence 4444556788889999999999999999999997643 66788888888888888876444321 00 000
Q ss_pred hccc--chhhHHHHHHHHHHHHHhhheee
Q 012918 111 CAAC--GNLKAAFLVAVVFLTLCALVTIY 137 (453)
Q Consensus 111 ~~~~--~~~r~~f~i~~i~~~i~~~it~~ 137 (453)
+ ++ ..|...|.+.++.+++++++...
T Consensus 153 ~-fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 C-FGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred c-cccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 14888999999998877766443
No 267
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=54.76 E-value=27 Score=35.29 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=56.3
Q ss_pred HHHHHHHHhccchhhhccccchhhcccccCC-CCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHH
Q 012918 355 ASLVVFTLLGFPLAITYSVPFAITAELTADS-GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSA 433 (453)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~-~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~ 433 (453)
...+...+.++|.|..-..--++++|.++++ ++.+-.....+...+.++-+++....+.+-+..|- ...|.+.++..
T Consensus 35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~--~~~f~i~~~~~ 112 (372)
T PF00854_consen 35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGW--FLGFGIPAIGM 112 (372)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccch--hhhhhHHHHHH
Confidence 3444455577777777777677899999876 34444446666677777777777788777766653 24688888877
Q ss_pred HHHHHHh
Q 012918 434 LAGGVVA 440 (453)
Q Consensus 434 liaa~~v 440 (453)
+++.+..
T Consensus 113 ~~~~~~f 119 (372)
T PF00854_consen 113 LLALIVF 119 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 268
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=54.03 E-value=14 Score=36.42 Aligned_cols=93 Identities=16% Similarity=0.062 Sum_probs=59.8
Q ss_pred HHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc-c-------------
Q 012918 355 ASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG-G------------- 420 (453)
Q Consensus 355 ~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g-~------------- 420 (453)
..++.+.+.|.+.+.....-=+++++.-|.+ +....+++.+.++.++.++.+++.+.++.... .
T Consensus 12 ~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~--~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (310)
T TIGR01272 12 LFLGALFVLASGLTILQVAANPYVSILGPIE--TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA 89 (310)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc--hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence 3444555677777777776666777777765 56777999999999999999988887653211 0
Q ss_pred cchhhHh-HHHHHHHHHHHHhheeccCCCC
Q 012918 421 GNIPAFV-LASLSALAGGVVATLKLPHLSS 449 (453)
Q Consensus 421 ~~~~~f~-~~a~~~liaa~~v~~~vpet~g 449 (453)
.....+. ++++..+++.++.....||.|.
T Consensus 90 ~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~ 119 (310)
T TIGR01272 90 KVHTPYLLLAGALAVLAIIFAFLPLPELQE 119 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 1123444 4455555555555555777643
No 269
>PRK03612 spermidine synthase; Provisional
Probab=48.99 E-value=55 Score=35.10 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=39.6
Q ss_pred hhcccccCCC-CCcceeehhhHHHHHHHHHHHhhccccc-eecccccchhhHhHHHHHHHHHHHHh
Q 012918 377 ITAELTADSG-GGQGLAIGVLNLAIVIPQMIVSLGAGPW-DALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 377 Lise~~p~~~-r~~G~~~gi~n~~~~l~q~i~s~~~g~l-~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
++..+..... +..|...|-+..+..++.++.++..+.+ +..+|... +..+.+.++++.+++.
T Consensus 130 l~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~--t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 130 LLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIR--TAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHH
Confidence 4444444321 2367778999999999999999988865 45777542 3444455555555433
No 270
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=41.98 E-value=1.8e+02 Score=30.11 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=30.5
Q ss_pred eeehhHHHHHHHHHhhcccccchhhHHHHhcCCCccchh
Q 012918 34 TRAAFVFVIGFWLLDLANNTVQGPARALLADLSGPDQRN 72 (453)
Q Consensus 34 ~~~i~~~v~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~ 72 (453)
.+.-.++.+.+++++++....|+...-+.++..++--|+
T Consensus 114 ~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqa 152 (406)
T KOG1479|consen 114 NGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQA 152 (406)
T ss_pred chhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHH
Confidence 344556777788999999999999999999987665454
No 271
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=41.71 E-value=40 Score=33.17 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred HHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhc
Q 012918 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITY 371 (453)
Q Consensus 292 ~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~ 371 (453)
.++++..+.+.+.||.|||+.-+. +.+.+....+....+ +|- ..++-=++-|++.+.+.
T Consensus 84 SsmLFGtivgSLaDkqGRKracvt----ycitYiLsCiTKhSp--qYk---------------VLmVGR~LGGiaTsLLF 142 (454)
T KOG4332|consen 84 SSMLFGTIVGSLADKQGRKRACVT----YCITYILSCITKHSP--QYK---------------VLMVGRVLGGIATSLLF 142 (454)
T ss_pred hHHHHHHHHHHHHhhhccccceee----ehHHHHHHHHhhcCC--ceE---------------EEeehhhhhhHHHHHHH
Confidence 567778889999999999997664 344444334444221 111 11122233344433322
Q ss_pred ccc-chhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccc----cceecccccchhhHhHHHHHHHHHHHHh
Q 012918 372 SVP-FAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAG----PWDALFGGGNIPAFVLASLSALAGGVVA 440 (453)
Q Consensus 372 ~vP-~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g----~l~~~~g~~~~~~f~~~a~~~liaa~~v 440 (453)
+.= --++.|....++=.+-.-...+.=+.++.|-++..+.| .+++.++-++.+.|--++.+-.++....
T Consensus 143 SaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 143 SAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI 216 (454)
T ss_pred HHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 210 01555554322111122233344444555544444444 4555555556556776666655554433
No 272
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=39.61 E-value=82 Score=33.45 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHhhhcCCcccccccCCCceee--hhHHHHHHHHHhhc------------------ccccchhhHHHHhcCCCccc--hh
Q 012918 15 IGYILGDTKEHCSKFRGTRTRA--AFVFVIGFWLLDLA------------------NNTVQGPARALLADLSGPDQ--RN 72 (453)
Q Consensus 15 ig~~l~d~~~~~~~~~~~~~~~--i~~~v~g~~lld~a------------------~n~~~~p~rA~i~D~~p~~q--r~ 72 (453)
+|.+++|+- .+++|+.. .++.++|-.++-.+ ....-+-.-+++.|.-|+++ |.
T Consensus 80 ~GG~laDr~-----LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD 154 (498)
T COG3104 80 IGGWLADRV-----LGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD 154 (498)
T ss_pred HHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence 488888864 24444432 12333444444433 33344446678999999744 67
Q ss_pred hHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhhee
Q 012918 73 SANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTI 136 (453)
Q Consensus 73 ~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~ 136 (453)
.+++++=+.+++|++++.++... +.. ...|...|.++++-+.+++++..
T Consensus 155 ~gFt~fY~~iNiGsl~~p~i~~~--~~~-------------~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 155 GGFTLFYMGINIGSLIAPIITGL--LAI-------------NYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred CCccEEEEEeehHHHHHHHHHHH--HHH-------------hhCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888766543 111 13588899999988877776544
No 273
>PRK10692 hypothetical protein; Provisional
Probab=38.98 E-value=38 Score=26.80 Aligned_cols=56 Identities=7% Similarity=-0.005 Sum_probs=36.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHH-HhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 308 GSRLVWAISNFIVFACMATTAI-ISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 308 grr~l~~~g~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.||....+|+++|+++|+.+.. +.+...++ + +.+.+...+.-.+++||..|.+.|+
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~gigysi~~~----i------~~L~Lp~~~~~gal~~IFiGAllWL 58 (92)
T PRK10692 2 KRKNASLLGNVLMGLGLVVMVVGVGYSILNQ----L------PQLNLPQFFAHGALLSIFVGALLWL 58 (92)
T ss_pred cchhhHHHhhHHHHHHHHHHHHHHHHHHHHh----c------ccCCchHHHHhhHHHHHHHHHHHHH
Confidence 4788889999999999975533 21111110 0 1223445666778899999999996
No 274
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=37.00 E-value=34 Score=32.96 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred hcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHHHHHHHhhheeeEeecc
Q 012918 63 ADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCALVTIYFADEV 142 (453)
Q Consensus 63 ~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i~~~i~~~it~~~v~E~ 142 (453)
...-| ++||.+.++..-+.|+++.+=-.+... .+ . ++.-+.++.++..+.++++ +.++++++.
T Consensus 122 ~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~-----~f---~-------~~~~~fll~la~~~~~v~l-~~~~~vr~~ 184 (250)
T PF06813_consen 122 VRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA-----FF---G-------DDPSSFLLFLAVLPAVVCL-VAMFFVRPV 184 (250)
T ss_pred HHhCc-cccCceehhhhHHHHhHHHHHHHHHHH-----Hc---C-------CChHHHHHHHHHHHHHHHH-HHhhheecc
Confidence 34555 689999999999988886653222211 11 1 1345567777888876664 567778877
Q ss_pred cCC
Q 012918 143 PLT 145 (453)
Q Consensus 143 p~~ 145 (453)
|..
T Consensus 185 ~~~ 187 (250)
T PF06813_consen 185 PPS 187 (250)
T ss_pred CCc
Confidence 653
No 275
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=35.72 E-value=1.4e+02 Score=23.70 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHh
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIIS 331 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~ 331 (453)
.+.-..+.+-..+.++...++.++.++++++..|.+..+++++.+++..
T Consensus 30 g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 30 GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566677788888888888887778888888877777776666654
No 276
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=30.76 E-value=98 Score=27.44 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHH
Q 012918 358 VVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMI 406 (453)
Q Consensus 358 ~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i 406 (453)
+..+++||+||++.. ..-|+ ..|..+|.=++...++-+.
T Consensus 107 Fg~gllGisYGilSa-------SWD~~---r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 107 FGLGLLGISYGILSA-------SWDPE---REGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHhhhhhhccc-------ccCCC---CCCCcccHHHHHHhHHHHH
Confidence 344668888888443 34443 3677788777666655544
No 277
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=29.44 E-value=2.6e+02 Score=29.60 Aligned_cols=116 Identities=7% Similarity=-0.003 Sum_probs=63.5
Q ss_pred HHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcc------cCCCCch---------hHHHHHHH
Q 012918 294 GVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIE------HGIGANQ---------AIKVASLV 358 (453)
Q Consensus 294 ~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~------~~~~~~~---------~~~~~~~~ 358 (453)
++...+-.++++|++|++++-.-...|...++..+++..-. +|..+... ...+++. +.-....+
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~-~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPL-SDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcc-hhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 33356678999999999998887777766665555542211 11100000 0000000 00011122
Q ss_pred HHHHhccc-hhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce
Q 012918 359 VFTLLGFP-LAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD 415 (453)
Q Consensus 359 ~~~~~Gi~-~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~ 415 (453)
..-++|.- .+.+.| +.+.|.+..+ ...+..++++....++.++.+.....+.
T Consensus 137 ~~elw~~~vvS~lFW---~fandi~t~~--qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSVVLSLLFW---GFANQITTID--EAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHH---HHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223321 122344 4888888764 5777888988888899888887665544
No 278
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=28.06 E-value=58 Score=25.64 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=35.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHH-HhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccc
Q 012918 308 GSRLVWAISNFIVFACMATTAI-ISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSV 373 (453)
Q Consensus 308 grr~l~~~g~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~v 373 (453)
.||....+|+.+|+++|+.+.. +.+..-+. + +.+.+.-.+.-.+++||..|.+.|+
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~gigysi~~~----~------~~L~Lp~~~~~gal~~IFiGAllWL 58 (89)
T PF10762_consen 2 KRKNAFLLGNVLMGLGMVVMVGGIGYSILSQ----I------PQLGLPQFLAHGALFSIFIGALLWL 58 (89)
T ss_pred CchhhHHHhhHHHHHhHHHHHHhHHHHHHHh----c------ccCCCcHHHHhhHHHHHHHHHHHHH
Confidence 4788889999999998865532 21111010 0 1122344556677888989999996
No 279
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.03 E-value=1.6e+02 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHhcCCCccchhhHHHHHHHHHHhhhhHhhccc
Q 012918 60 ALLADLSGPDQRNSANAIFCSWMAVGNILGFSAG 93 (453)
Q Consensus 60 A~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig 93 (453)
.=+-|+.||.+|....+..+.......-+....|
T Consensus 56 ~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~sfsG 89 (145)
T TIGR00986 56 YALKDIVPPTTRGWIYHKYSTTTNFVKSTLSFAG 89 (145)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4467999999999888877666655444433333
No 280
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=24.53 E-value=7.6e+02 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcccccchhhHHHHh
Q 012918 40 FVIGFWLLDLANNTVQGPARALLA 63 (453)
Q Consensus 40 ~v~g~~lld~a~n~~~~p~rA~i~ 63 (453)
.++|=++..++.........+.+.
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V 147 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMV 147 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777887777654
No 281
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=23.70 E-value=88 Score=32.26 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhcccccc
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASG 96 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~ 96 (453)
+|+|.+|.++ .-.+-|.+|+++|...++.+..+...=.++.++++-+.
T Consensus 398 ~GLW~fDlAV-------tqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilvIi~ 445 (503)
T KOG2601|consen 398 LGLWMFDLAV-------TQIMQETVPESERCVVFGVQNSLNSALDLLKDILVIIV 445 (503)
T ss_pred hhHHhccHHH-------HHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEEEEe
Confidence 7889999875 44566999999999999999999999999999888653
No 282
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.43 E-value=5e+02 Score=27.82 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhhcCc
Q 012918 283 AFGLLLNSVVLGVSSFLIEPMCRWIGS 309 (453)
Q Consensus 283 ~~~l~~~s~~~~i~s~~~~~l~d~~gr 309 (453)
..+++.|.+.+.+++.+..++-+.+|.
T Consensus 300 t~~i~~y~~~~~iaGy~S~~~yk~~~g 326 (521)
T PF02990_consen 300 TAAIILYALTSFIAGYVSARLYKSFGG 326 (521)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 356677888889999999999888864
No 283
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=22.88 E-value=3.4e+02 Score=27.77 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchh-HHHHHHHHHHHhccchhhh
Q 012918 292 VLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQA-IKVASLVVFTLLGFPLAIT 370 (453)
Q Consensus 292 ~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Gi~~a~~ 370 (453)
.-+++-+++-.+++++|--..|+++.+..++ +.++.+..... + |- .....+.+..++|+.|+.+
T Consensus 334 sLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~-l~~~YL~avl~-~-------------~~~g~~f~~~L~~lygvm~glL 398 (443)
T COG4452 334 SLVMFYLLLLALSEHIGFTVAYLIASLAGAL-LNGIYLQAVLR-G-------------WRNGLLFFLALLLLYGVMFGLL 398 (443)
T ss_pred HHHHHHHHHHHHHhhcCcCHHHHHHHHHHHH-HHHHHHHHHHh-h-------------hhhhHHHHHHHHHHHHHHHHHh
Confidence 3344456667778889988888876444332 22222222111 1 10 2456667778899999998
Q ss_pred ccccchhhc
Q 012918 371 YSVPFAITA 379 (453)
Q Consensus 371 ~~vP~aLis 379 (453)
..=.|||+.
T Consensus 399 ~~edyALL~ 407 (443)
T COG4452 399 NSEDYALLL 407 (443)
T ss_pred hhhHHHHHH
Confidence 887777653
No 284
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=22.58 E-value=1.6e+02 Score=28.86 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHH
Q 012918 354 VASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIV 407 (453)
Q Consensus 354 ~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~ 407 (453)
.-+...-.+.||+.+.+..-..++-+.....+.++.+-..|-++++-=+.+-++
T Consensus 294 symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA 347 (412)
T KOG4830|consen 294 SYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIA 347 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHH
Confidence 334455566888888776655555555665555566667788777766666554
No 285
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=22.38 E-value=30 Score=37.25 Aligned_cols=158 Identities=14% Similarity=0.099 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhH-HHHHHHHHHHHHHHHHhhhhhcccc--C-----------Cccc-------
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWA-ISNFIVFACMATTAIISVISVREYS--G-----------GIEH------- 344 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~-~g~~~~~i~l~~~~~~~~~~~~~~~--~-----------~~~~------- 344 (453)
...|-+...+..++...+-+| |.|+-|+ +|.++++++.++..+-++..+ .|. . ...+
T Consensus 44 ~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~-~y~~~~~~~~~~~~~~~~~~c~~~~~~~ 121 (539)
T PF03137_consen 44 SSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSG-PYSYEEASNSNGNSSISSNLCDSSSSSQ 121 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcC-CCcccccccccccccccccccccccccc
Confidence 334556666666666666666 4555555 688888888776655433321 110 0 0000
Q ss_pred ---------C--CCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhcccc
Q 012918 345 ---------G--IGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGP 413 (453)
Q Consensus 345 ---------~--~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~ 413 (453)
. ....+.-.+..++.-.+.|++-++++++-.+.+=|-.+++ ..+.|+|++..+..++..+.-++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~--~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 122 ASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK--NSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp ------------------------------SSS-----------------------------------------------
T ss_pred ccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc--cCccchhhhhHHhhccHHHHHHHHHH
Confidence 0 0001111233444557799999999998888888877765 78999999999988887766555554
Q ss_pred ceec----c-------c---cc-----chhh-HhHHHHHHHHHHHHhhe---eccCC
Q 012918 414 WDAL----F-------G---GG-----NIPA-FVLASLSALAGGVVATL---KLPHL 447 (453)
Q Consensus 414 l~~~----~-------g---~~-----~~~~-f~~~a~~~liaa~~v~~---~vpet 447 (453)
.++. . + .+ .+|. |++.|++.++.++-... .+|++
T Consensus 200 ~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 200 CLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 4321 1 0 01 1222 88888888887775543 36666
No 286
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=21.92 E-value=2.4e+02 Score=22.43 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccceeeeecC
Q 012918 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHG 263 (453)
Q Consensus 232 ~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g 263 (453)
+.+.+..+..++|+....-|.+++++..++.|
T Consensus 19 ~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G 50 (91)
T PF04341_consen 19 WPLSAIFLVLYFGFVLLSAFAPELMATPVFPG 50 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHcCcccCC
Confidence 34555666667788888899999999877744
No 287
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=21.00 E-value=3.1e+02 Score=28.38 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=19.8
Q ss_pred HHHHHHhhhHHHhhhhcCc-chhhHHHHHHHHHHHHH
Q 012918 291 VVLGVSSFLIEPMCRWIGS-RLVWAISNFIVFACMAT 326 (453)
Q Consensus 291 ~~~~i~s~~~~~l~d~~gr-r~l~~~g~~~~~i~l~~ 326 (453)
+=+.+.-++.|++++|+.- .|++.. .+.++++++.
T Consensus 70 ~P~l~~Kl~aP~fi~~v~y~~Ri~~~-~~l~~~g~l~ 105 (402)
T PF02487_consen 70 LPSLLVKLIAPFFIHRVPYWIRILIC-VALSAAGMLL 105 (402)
T ss_pred HHHHHHHHHhHhhhhhccchHHHHHH-HHHHHHHHhh
Confidence 3455666778888888853 344443 2334444443
No 288
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.72 E-value=2e+02 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=20.9
Q ss_pred HHHhcCCCccchhhHHHHHHHHHHhhhhHh
Q 012918 60 ALLADLSGPDQRNSANAIFCSWMAVGNILG 89 (453)
Q Consensus 60 A~i~D~~p~~qr~~a~~~~~~~~~lG~ilg 89 (453)
.=+-|+.||.+|....+..+.......-+.
T Consensus 58 ~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~ 87 (137)
T PF04281_consen 58 WALKDIFPPSVRNWISSTVSTTSSAVKSLF 87 (137)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999988877765554443333
No 289
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=20.33 E-value=2.1e+02 Score=26.00 Aligned_cols=71 Identities=24% Similarity=0.121 Sum_probs=47.9
Q ss_pred HhhcccccchhhHHHHhcCCCc-cchhhHHHHHHH-HHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGP-DQRNSANAIFCS-WMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~-~qr~~a~~~~~~-~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
..++.........+++.|..|+ ++|+...+.... ...+|.+++..++... ... ....||..|.+.
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~ 170 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL--LGA-----------LLWGWRAAFLLA 170 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------HhcchHHHHHHH
Confidence 3455556677789999999998 778888888887 5777777776555431 000 124688877777
Q ss_pred HHHHHH
Q 012918 125 VVFLTL 130 (453)
Q Consensus 125 ~i~~~i 130 (453)
.+....
T Consensus 171 ~~~~~~ 176 (338)
T COG0477 171 ALLGLL 176 (338)
T ss_pred HHHHHH
Confidence 666533
Done!