Query 012918
Match_columns 453
No_of_seqs 152 out of 1090
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 3.7E-25 1.3E-29 229.5 3.6 333 46-452 135-471 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 1.3E-17 4.3E-22 170.2 11.0 299 47-442 129-432 (451)
3 3o7q_A L-fucose-proton symport 99.6 2.6E-15 9.1E-20 152.5 15.3 292 44-440 124-429 (438)
4 2gfp_A EMRD, multidrug resista 99.5 1.1E-14 3.9E-19 145.2 10.0 257 45-418 96-353 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.5 9E-14 3.1E-18 143.8 15.2 347 42-450 113-478 (491)
6 2cfq_A Lactose permease; trans 99.5 5.3E-15 1.8E-19 150.8 0.4 143 285-451 264-407 (417)
7 2xut_A Proton/peptide symporte 99.1 1.9E-10 6.5E-15 119.8 10.7 94 356-451 408-510 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.1 1.1E-10 3.8E-15 120.5 6.4 187 227-445 11-198 (491)
9 2gfp_A EMRD, multidrug resista 99.0 8.8E-10 3E-14 109.6 11.6 178 233-450 4-181 (375)
10 1pw4_A Glycerol-3-phosphate tr 98.9 1.2E-09 4.2E-14 110.8 7.7 183 231-449 30-212 (451)
11 2xut_A Proton/peptide symporte 98.8 1.4E-08 4.7E-13 105.7 11.4 186 227-442 10-197 (524)
12 3o7q_A L-fucose-proton symport 98.8 2.4E-08 8.3E-13 100.8 11.8 148 284-450 65-237 (438)
13 4gc0_A D-xylose-proton symport 98.1 3.8E-06 1.3E-10 86.2 7.8 157 285-447 60-223 (491)
14 2cfq_A Lactose permease; trans 98.0 3.8E-07 1.3E-11 92.4 -1.9 185 229-447 7-191 (417)
15 2g9p_A Antimicrobial peptide l 30.1 18 0.00061 20.2 0.9 13 300-312 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.90 E-value=3.7e-25 Score=229.50 Aligned_cols=333 Identities=9% Similarity=0.004 Sum_probs=212.2
Q ss_pred HHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHH
Q 012918 46 LLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (453)
Q Consensus 46 lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~ 125 (453)
+..++........++|++|.+|+++|++..++.+....+|.++++.++... ...... .......||.++.+..
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI--ARSGDA-----SWLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCT-----TTTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh--cccccc-----ccccchhhHHHhhhhh
Confidence 445666677888999999999999999999999999999999998887541 110000 0001247999998888
Q ss_pred HHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhcccccccc
Q 012918 126 VFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDT 205 (453)
Q Consensus 126 i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (453)
++.+ ..++..+..||+|+|...+++.+++++.+ ++.+. .+...++..+.++..
T Consensus 208 ~~~~-~~~~~~~~~peSp~~L~~~~~~~~a~~~l--------~~~~~------------------~~~~~~~~~~~~~~~ 260 (491)
T 4gc0_A 208 IPAL-LFLMLLYTVPESPRWLMSRGKQEQAEGIL--------RKIMG------------------NTLATQAVQEIKHSL 260 (491)
T ss_dssp HHHH-HHHHHGGGSCCCHHHHHHTTCHHHHHHHH--------HHHHH------------------HHHHHHHHHHHHHHH
T ss_pred hhhh-hhhhhhhcCCCChHHHHHcCchhHHHHhH--------HHhcC------------------CchhHHHHHHHHHHH
Confidence 8864 45567888999999987766543332221 11110 000000000000000
Q ss_pred CCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 206 NGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+ ..+.. .........++.....+...+.++.+++.+.+|.+....+. +.+ . ......
T Consensus 261 -~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~--~~~~~~ 317 (491)
T 4gc0_A 261 -D----HGRKT--GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL--GAS------------T--DIALLQ 317 (491)
T ss_dssp -H----HHHHH--TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--SCC------------H--HHHHHH
T ss_pred -H----hhhhh--hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc--CCC------------c--cchhhH
Confidence 0 00000 00111234455555556666677788888888877654321 111 1 011133
Q ss_pred HHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhcc
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGF 365 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 365 (453)
..+.+++..+.+++..+++||+|||+.++.+...++++++..+.......+ ++......++....+++
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP------------GIVALLSMLFYVAAFAM 385 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc------------hHHHHHHHHHHHHHHHh
Confidence 445667788888999999999999999999988888877665554322100 22223333344455566
Q ss_pred chhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceeccc----ccchhhHhHHHHHHHHHHHHhh
Q 012918 366 PLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFG----GGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 366 ~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g----~~~~~~f~~~a~~~liaa~~v~ 441 (453)
++++. ++.+.+|.+|.+ -+|+.+|+.+...++++++++.+++.+.+..+ ......|+++++++++++++++
T Consensus 386 ~~~~~---~~~~~~E~fPt~--~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 386 SWGPV---CWVLLSEIFPNA--IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp TTTHH---HHHHHHHSSCTT--THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHhCCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66654 455999999987 45666999999999999999998887654311 1122468899999999999999
Q ss_pred eeccCCCCCCC
Q 012918 442 LKLPHLSSNSF 452 (453)
Q Consensus 442 ~~vpet~g~~~ 452 (453)
+++|||||||+
T Consensus 461 ~~~PETkg~tL 471 (491)
T 4gc0_A 461 KFVPETKGKTL 471 (491)
T ss_dssp HHCCCCTTCCH
T ss_pred heecCCCCCCH
Confidence 99999999985
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.72 E-value=1.3e-17 Score=170.24 Aligned_cols=299 Identities=13% Similarity=0.086 Sum_probs=197.9
Q ss_pred HhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHHHH
Q 012918 47 LDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVV 126 (453)
Q Consensus 47 ld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~~i 126 (453)
..++......+..+++.|..|+++|++++++.+...++|.++|..++... .. . . ++||+.|.+.++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~----~----~-g~w~~~f~~~~~ 194 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-----MA----W----F-NDWHAALYMPAF 194 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-----HH----H----T-CCSTTCTHHHHH
T ss_pred HHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HH----H----h-ccHHHHHHHHHH
Confidence 34445557778899999999999999999999999999999998887541 10 0 0 138998988887
Q ss_pred HHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccccC
Q 012918 127 FLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTN 206 (453)
Q Consensus 127 ~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (453)
+.+++.++..+.+||+|.+...++.+ +.++. . +++.+.+ +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~----------------------------~~~~~~~-----~---- 234 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCGLPPIE-EYKND--Y----------------------------PDDYNEK-----A---- 234 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTCCCSCT-TTCCC------------------------------------------------
T ss_pred HHHHHHHHHHhhccCCHhhcCCCChh-hhccc--c----------------------------cccchhh-----h----
Confidence 76666666677789987654322110 00000 0 0000000 0
Q ss_pred CCCCCCchhhHHHH-HHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHH
Q 012918 207 GSFNDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFG 285 (453)
Q Consensus 207 ~~~~~~~~~~~~~~-~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~ 285 (453)
+++.+.++. ++... ..+.++.+++..++.+.+.+.+..|.+.|+.+ .++.++ . ..| +.
T Consensus 235 -----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~---------~----~~~-~~ 293 (451)
T 1pw4_A 235 -----EQELTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL---------D----KSS-WA 293 (451)
T ss_dssp ---------CCTHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH---------H----HHH-HH
T ss_pred -----hcccccccchHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH---------H----HHH-HH
Confidence 001111222 22221 24667778888888888888888899988765 233221 1 122 45
Q ss_pred HHHHHHHHHHHhhhHHHhhhhc--CcchhhHHHHHHHH-HHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHH
Q 012918 286 LLLNSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTL 362 (453)
Q Consensus 286 l~~~s~~~~i~s~~~~~l~d~~--grr~l~~~g~~~~~-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (453)
...+++...+.+++.+++.||+ |||+.+..+..+.+ ++++...+.. ++ ..+...+...+
T Consensus 294 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------~~~~~~~~~~~ 355 (451)
T 1pw4_A 294 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP----AG--------------NPTVDMICMIV 355 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC----TT--------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc----cc--------------CHHHHHHHHHH
Confidence 5567778888899999999999 99998887765554 4333222221 00 13334445556
Q ss_pred hccchhhhccccchhhcccccCCCCCcceeehhhHHHHHH-HHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhh
Q 012918 363 LGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVI-PQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVAT 441 (453)
Q Consensus 363 ~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l-~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~ 441 (453)
.|++.+......++++.|..|++ .+|+.+|+.+....+ ++.+.+.+.|.+.+..|. ...|.+.++++++++++..
T Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 356 IGFLIYGPVMLIGLHALELAPKK--AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW--DGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHTHHHHHHHHHHHHTSCTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHHhchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 77777766666677899999975 688889999999999 999999999999888773 3578888888888877655
Q ss_pred e
Q 012918 442 L 442 (453)
Q Consensus 442 ~ 442 (453)
+
T Consensus 432 ~ 432 (451)
T 1pw4_A 432 V 432 (451)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.63 E-value=2.6e-15 Score=152.53 Aligned_cols=292 Identities=13% Similarity=0.077 Sum_probs=179.7
Q ss_pred HHHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccc------------hhhh
Q 012918 44 FWLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTS------------RACC 111 (453)
Q Consensus 44 ~~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~------------~~~~ 111 (453)
..+..++......+..+++.|..|+++|+++.++.+...++|.++|..++... ..+..+...+ +...
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhhhhhh
Confidence 34455566677788999999999999999999999999999999999888652 0010000000 0000
Q ss_pred cccchhhHHHHHHHHHHHHHhhhe-eeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcc
Q 012918 112 AACGNLKAAFLVAVVFLTLCALVT-IYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHE 190 (453)
Q Consensus 112 ~~~~~~r~~f~i~~i~~~i~~~it-~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (453)
....+||+.|.+.+++.++..++. ....||++....+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------------------------- 242 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA---------------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS----------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc----------------------------------------
Confidence 000129999976665544333322 222333321100000
Q ss_pred cchhhhhccccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhccccc-ceeeeecCCCCCCC
Q 012918 191 SDANLKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDPKGND 269 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~-vg~~if~g~p~~~~ 269 (453)
+ +......+++++ +. +.++..++..++...+...+..|.+.| +.+ .++.+
T Consensus 243 ----------------~--~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----- 293 (438)
T 3o7q_A 243 ----------------K--QGSFSASLSRLA----RI-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMT----- 293 (438)
T ss_dssp ----------------S--TTSHHHHHHHHT----TC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCC-----
T ss_pred ----------------c--ccchhhhHHHHH----hC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcc-----
Confidence 0 001122333333 22 346666777777777777777788877 544 33322
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCc
Q 012918 270 HEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGAN 349 (453)
Q Consensus 270 ~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (453)
. ....+....+.+...+..++.+++.||+|||+++..+.++.+++++...+.. +
T Consensus 294 -------~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~----~------------- 347 (438)
T 3o7q_A 294 -------A--GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG----G------------- 347 (438)
T ss_dssp -------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC----H-------------
T ss_pred -------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC----C-------------
Confidence 1 1122445556778888899999999999999999988877776655444332 1
Q ss_pred hhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHH
Q 012918 350 QAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLA 429 (453)
Q Consensus 350 ~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~ 429 (453)
.. .++.+.+.|++.+....+.++++.|.+|++ .+...++.+ ...+++.+.+.+.|.+.+..|+. ...|.+.
T Consensus 348 ---~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~ 418 (438)
T 3o7q_A 348 ---HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI-PTAELIP 418 (438)
T ss_dssp ---HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS-GGGGHHH
T ss_pred ---cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch-HHHHHHH
Confidence 11 223335567777777777778888999864 455566666 55689999999999999888733 2467776
Q ss_pred HHHHHHHHHHh
Q 012918 430 SLSALAGGVVA 440 (453)
Q Consensus 430 a~~~liaa~~v 440 (453)
+++.++..++.
T Consensus 419 ~~~~~~~~~~~ 429 (438)
T 3o7q_A 419 ALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.54 E-value=1.1e-14 Score=145.21 Aligned_cols=257 Identities=13% Similarity=0.011 Sum_probs=171.3
Q ss_pred HHHhhcccccchhhHHHHhcCCCccchhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhHHHHHH
Q 012918 45 WLLDLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (453)
Q Consensus 45 ~lld~a~n~~~~p~rA~i~D~~p~~qr~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~~f~i~ 124 (453)
.+..++.........+++.|..|+++|++++++.+....+|..+|..++... .+ ..+||+.|.+.
T Consensus 96 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---------~~------~~~~~~~~~~~ 160 (375)
T 2gfp_A 96 AMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL---------DT------MWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS---------SC------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------HH------hccHHHHHHHH
Confidence 3455566667778899999999999999999999999999999999887641 01 02699999988
Q ss_pred HHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCcccCcccchhhhhccccccc
Q 012918 125 VVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAED 204 (453)
Q Consensus 125 ~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (453)
++..+++.+...+..||+|.++.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 187 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAPRTR----------------------------------------------------- 187 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCCCCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCcccCCCCccccc-----------------------------------------------------
Confidence 888766666667778887643211100
Q ss_pred cCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHH
Q 012918 205 TNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAF 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~ 284 (453)
...++++.+++ |.++.+++..++.+.+...+..|.+.|+.+ .++ +++ ....+
T Consensus 188 --------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------------~~~--~~~g~ 239 (375)
T 2gfp_A 188 --------LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLG------------LSS--MTVSI 239 (375)
T ss_dssp --------TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHH------------HHH--HHHHH
T ss_pred --------HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC------------CCH--HHHHH
Confidence 01112333433 456677788888888888888888887543 111 111 12224
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHH-HHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFI-VFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~-~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
.....++...+.+.+.+++.||+++|. ..+... ...++....+... ..+ ..+..++...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~l~ 301 (375)
T 2gfp_A 240 LFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-GVM---------------NVWTLLVPAALF 301 (375)
T ss_dssp HHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-HHH---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-ccc---------------cHHHHHHHHHHH
Confidence 455666777888889999999988732 232222 1111111111110 000 133444556678
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecc
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALF 418 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~ 418 (453)
|++.+.......+++.|..| + .+|+..|+.+....+++.+.+...|.+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~p-~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 302 FFGAGMLFPLATSGAMEPFP-F--LAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHHHHHTSSTTHHHHHTHHH-H--HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhCC-c--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888889999998 4 5788899999999999999888888876543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.52 E-value=9e-14 Score=143.79 Aligned_cols=347 Identities=10% Similarity=0.044 Sum_probs=179.9
Q ss_pred HHHHHHhhcccccchhhHHHHhcCCCccc--hhhHHHHHHHHHHhhhhHhhccccccccccccccccchhhhcccchhhH
Q 012918 42 IGFWLLDLANNTVQGPARALLADLSGPDQ--RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKA 119 (453)
Q Consensus 42 ~g~~lld~a~n~~~~p~rA~i~D~~p~~q--r~~a~~~~~~~~~lG~ilgy~ig~~~~~~~~~~~~~~~~~~~~~~~~r~ 119 (453)
++..+..++......+..+++.|..|+++ |+++.++++...++|..+|..++... . . ..+||+
T Consensus 113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l-----~----~------~~g~~~ 177 (491)
T 4aps_A 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA-----Q----E------AAGYHV 177 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----H------HSCHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH-----H----h------hhhHHH
Confidence 34445566666778889999999999988 77788889999999999998877641 1 0 136999
Q ss_pred HHHHHHHHHHHHhhheeeEeecccCCCCCCCCCCCCCCCCCCccc-ccccccCCCCC-----CCCCCCCCCcccCcccch
Q 012918 120 AFLVAVVFLTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQR-NAISKSKHDMP-----AAPNANGNKVESGHESDA 193 (453)
Q Consensus 120 ~f~i~~i~~~i~~~it~~~v~E~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 193 (453)
.|.+.++..+++.++..+..|+.+ .++++..+. + .+.++. +..+....-.. ....... +..+.+.
T Consensus 178 ~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~----~~~~~~~ 248 (491)
T 4aps_A 178 AFSLAAIGMFIGLLVYYFGGKKTL---DPHYLRPTD-P-LAPEEVKPLLVKVSLAVAGFIAIIVVMNLV----GWNSLPA 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---CSCCSCCSC-C-CSHHHHHHHHHHCCCCCHHHHHHHHHHHHH----SSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccc---cccccCCCC-c-cccchhHHHHHHHHHHHHHHHHHHHHHHhc----cCccccc
Confidence 999988776665554433333321 111110000 0 000000 00000000000 0000000 0000000
Q ss_pred hhhhccccccccCCCCCCCchhhHHHHHHH------hccCCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCC
Q 012918 194 NLKHISKKAEDTNGSFNDGPGAVLVNLLTS------LRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKG 267 (453)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~ 267 (453)
.......... . .....+...++. .++.......+++..++.|+.+.....+.+.|..+ .++.++
T Consensus 249 ~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 318 (491)
T 4aps_A 249 YINLLTIVAI-A------IPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE-RVDSSW-- 318 (491)
T ss_dssp HHHHHHHHHH-H------HHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-SCCCSS--
T ss_pred chhhhhHHHH-H------HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HhccCc--
Confidence 0000000000 0 000000000000 00001113334555566666666666665655543 222221
Q ss_pred CChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchhhH-----HHHHHHHHHHHHHHHHhhhhhccccCCc
Q 012918 268 NDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWA-----ISNFIVFACMATTAIISVISVREYSGGI 342 (453)
Q Consensus 268 ~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~-----~g~~~~~i~l~~~~~~~~~~~~~~~~~~ 342 (453)
.+.+ +.....++...+.+.+.+++.||+|||+... .+.++.+++++.+.+......++. ..
T Consensus 319 -------~~~~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 384 (491)
T 4aps_A 319 -------FPVS-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG--KV 384 (491)
T ss_dssp -------SCSG-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT--TC
T ss_pred -------cCHH-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC--Cc
Confidence 0111 2334455666777888899999999987655 666666666654444331100000 00
Q ss_pred ccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccccc
Q 012918 343 EHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGN 422 (453)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~ 422 (453)
......+.+.+.|++.+......++++.|..|++ .+|+.+|+.+....+++.+.+.+.|.+.+. +.
T Consensus 385 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~-- 450 (491)
T 4aps_A 385 ---------SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA--FNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SE-- 450 (491)
T ss_dssp ---------CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT--CSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-ST--
T ss_pred ---------cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cH--
Confidence 1233445566678888877777788999999986 567779999999999999999988877653 32
Q ss_pred hhhHhHHHHHHHHHHHHhheeccCCCCC
Q 012918 423 IPAFVLASLSALAGGVVATLKLPHLSSN 450 (453)
Q Consensus 423 ~~~f~~~a~~~liaa~~v~~~vpet~g~ 450 (453)
...|.+.++++++++++...+.|+++.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468888888888888777777777654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.46 E-value=5.3e-15 Score=150.84 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhc
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLG 364 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 364 (453)
...+..+...+..++.+++.||+|||++...+.++++++++...+.. + ....++...+.+
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~~ 323 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT----S----------------ALEVVILKTLHM 323 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC----S----------------HHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc----c----------------HHHHHHHHHHHH
Confidence 34455566677788999999999999998887777766554332221 1 222233333444
Q ss_pred cchhhhccccchhhcccccCCCCCcceeehh-hHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhee
Q 012918 365 FPLAITYSVPFAITAELTADSGGGQGLAIGV-LNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLK 443 (453)
Q Consensus 365 i~~a~~~~vP~aLise~~p~~~r~~G~~~gi-~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~ 443 (453)
++.+.....-+++++|..|.+ .+|+..|+ +|....+++++.+...|.+.+..|. ...|.+.+++++++++.....
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 324 FEVPFLLVGCFKYITSQFEVR--FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--QGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHhh
Confidence 444443333457899999975 56777888 5888899999999999988876652 347888999999998887778
Q ss_pred ccCCCCCC
Q 012918 444 LPHLSSNS 451 (453)
Q Consensus 444 vpet~g~~ 451 (453)
.||+|..|
T Consensus 400 ~~~~~~~~ 407 (417)
T 2cfq_A 400 LSGPGPLS 407 (417)
T ss_dssp SCCSCTTC
T ss_pred hcCCCchH
Confidence 89877655
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.10 E-value=1.9e-10 Score=119.81 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=63.1
Q ss_pred HHHHHHHhccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc---------cchhhH
Q 012918 356 SLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG---------GNIPAF 426 (453)
Q Consensus 356 ~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~---------~~~~~f 426 (453)
.++...+.|++.+......++++.|..|++ .+|+.+|+.|+...+++++.+.+.|.+.+..+. .....|
T Consensus 408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 485 (524)
T 2xut_A 408 QILPYALLTFGEVLVSATGLEFAYSQAPKA--MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQM 485 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHCCTT--CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence 344556677777777777778999999976 567779999999999999999999887763210 001237
Q ss_pred hHHHHHHHHHHHHhheeccCCCCCC
Q 012918 427 VLASLSALAGGVVATLKLPHLSSNS 451 (453)
Q Consensus 427 ~~~a~~~liaa~~v~~~vpet~g~~ 451 (453)
++.++++++++++..++.|++|.++
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 486 FFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 8888888888887777788887764
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.06 E-value=1.1e-10 Score=120.48 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
.|+.++.++...++..++++.+..+.+.|+.+...+++-+ .+. ....+....+.+...+.+++.+++.||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr 80 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLH--------ITR--ATAASIMAIYASMVYLSGTIGGFVADR 80 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--------SCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcC--------CCH--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777888888888888777777777765532111100 011 122255667888889999999999999
Q ss_pred -cCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC
Q 012918 307 -IGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (453)
Q Consensus 307 -~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 385 (453)
+|||+++..+.++.+++.+...+.. + ....++...+.|++.+.......++++|.+|.+
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 140 (491)
T 4aps_A 81 IIGARPAVFWGGVLIMLGHIVLALPF----G----------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140 (491)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHSCC----S----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhh----h----------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc
Confidence 8999999999888887766554432 1 223444556788888888888888999999988
Q ss_pred CCCcceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheecc
Q 012918 386 GGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLP 445 (453)
Q Consensus 386 ~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vp 445 (453)
+|++|..+++++....++.++.+.+.+.+.+..| ..+.|.+.++..+++.+...+..|
T Consensus 141 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 141 DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7778888999999999999999999988877665 345788888877777665544433
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.03 E-value=8.8e-10 Score=109.56 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcchh
Q 012918 233 VVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLV 312 (453)
Q Consensus 233 ~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr~l 312 (453)
.+++..++.++++..+..+.+.+..+ ++.++ + ..| +....+.+...+.+.+.+++.||+|||+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~----------~---~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 67 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD--LNVRE----------G---AVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPV 67 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTT----------H---HHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCH----------H---HHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 45677777777777666666665432 23221 1 122 45566778888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCccee
Q 012918 313 WAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQGLA 392 (453)
Q Consensus 313 ~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G~~ 392 (453)
+..+.++.+++.....+.. +....++...+.|++.+.......++++|..|++ ++|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~~~~~ 125 (375)
T 2gfp_A 68 ILVGMSIFMLATLVAVTTS--------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT--QLRHA 125 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCCSH
T ss_pred HHHHHHHHHHHHHHHHHhc--------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH--HHHHH
Confidence 9999988888777666554 1444556667789999988888889999999876 56777
Q ss_pred ehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCCC
Q 012918 393 IGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSSN 450 (453)
Q Consensus 393 ~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g~ 450 (453)
+|+.+....++.++.+...+.+.+..| ....|.+.++..++..+...+.+||++.+
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 126 NSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999888877655 34578888888888887677789988653
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.92 E-value=1.2e-09 Score=110.79 Aligned_cols=183 Identities=16% Similarity=0.092 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcCcc
Q 012918 231 MHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSR 310 (453)
Q Consensus 231 l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~grr 310 (453)
+..+++..+...++...+..+.+.+..+. .++ .+ .| +...++.+...+.+.+.+++.||+|||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~---------~~----~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r 92 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG---FSR---------GD----LG-FALSGISIAYGFSKFIMGSVSDRSNPR 92 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST---TCS---------SC----HH-HHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccH---------hH----HH-HHHHHHHHHHHHHHHhHHHHHHhcCch
Confidence 44566777777777776777777665542 221 01 22 455567788888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCCcc
Q 012918 311 LVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGGQG 390 (453)
Q Consensus 311 ~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~~G 390 (453)
+++.++.++++++.+..++..... + + ....++...+.|++.+.....-.++++|.+|++ .+|
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~-~------------~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~--~r~ 154 (451)
T 1pw4_A 93 VFLPAGLILAAAVMLFMGFVPWAT-S------------S---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK--ERG 154 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH-S------------S---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT--HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-c------------c---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCch--hhh
Confidence 999999999988887766621100 1 1 223445566788888887777778999999875 678
Q ss_pred eeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCCCC
Q 012918 391 LAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHLSS 449 (453)
Q Consensus 391 ~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet~g 449 (453)
..+|+.+....+++++.+.+.+.+.+..|+ ....|++.++++++.+++..+.+||++-
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~-w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFND-WHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCC-STTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 889999999999999999888887766651 2357888898888888777777887643
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.82 E-value=1.4e-08 Score=105.69 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhh
Q 012918 227 LPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRW 306 (453)
Q Consensus 227 ~P~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~ 306 (453)
.|+.++.+++..++..++++.+..+.+.|+.+. ++.... ..++.. ..| +....+.+...+.+++.+++.||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~------~~~s~~-~~g-~~~~~~~~~~~~~~~~~G~l~dr 80 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIP------EELRGA-VAK-DVFHSFVIGVYFFPLLGGWIADR 80 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCS------SSTTTT-THH-HHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccc------cccCHH-HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888877777777776542 230000 000110 122 45556777888889999999999
Q ss_pred c-CcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCC
Q 012918 307 I-GSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADS 385 (453)
Q Consensus 307 ~-grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~ 385 (453)
+ |||+++.++.++.+++.+...+.. . +....++...+.|++.+.....-.++++|.+|++
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 81 FFGKYNTILWLSLIYCVGHAFLAIFE----H---------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHTS----S---------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhc----c---------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 9 999999999888877766554442 0 0334445566788888887777788999999986
Q ss_pred CCCcc-eeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhhe
Q 012918 386 GGGQG-LAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATL 442 (453)
Q Consensus 386 ~r~~G-~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~ 442 (453)
+|+.. ..+++.+....++..+.+.+.+.+.+..| ....|.+.+++.+++.+...+
T Consensus 142 ~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 142 NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 44321 23444888999999999999888876655 345788888887777665544
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.79 E-value=2.4e-08 Score=100.85 Aligned_cols=148 Identities=9% Similarity=-0.043 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHh
Q 012918 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 284 ~~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
+....+.+...+.+++.+++.||+|||+++..+.++++++.+........ + +.+..++...+.
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~---------------~~~~l~~~~~l~ 127 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--M---------------NYTLFLVGLFII 127 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--T---------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--c---------------cHHHHHHHHHHH
Confidence 45567778888899999999999999999999999988877766332211 1 144556667789
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccce-eccccc---------------------
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWD-ALFGGG--------------------- 421 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~-~~~g~~--------------------- 421 (453)
|++.+.....-.++++|..|++ .+|..+|+.+....++.++.+.+.+.+. +..+..
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPES--SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCST--THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 9999988888889999999976 6777799999999999999999998887 443320
Q ss_pred --chhhHhHHHHHHHHHHHHhh-eeccCCCCC
Q 012918 422 --NIPAFVLASLSALAGGVVAT-LKLPHLSSN 450 (453)
Q Consensus 422 --~~~~f~~~a~~~liaa~~v~-~~vpet~g~ 450 (453)
..+.|.+.++..++..+... ...||++.+
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 23456566655555444433 447877653
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.11 E-value=3.8e-06 Score=86.17 Aligned_cols=157 Identities=12% Similarity=0.002 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHhhhhhcccc-CCcccCCCCchhHHHHHHHHHHHh
Q 012918 285 GLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIISVISVREYS-GGIEHGIGANQAIKVASLVVFTLL 363 (453)
Q Consensus 285 ~l~~~s~~~~i~s~~~~~l~d~~grr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 363 (453)
....+.+-.++.+++.+++.||+|||+.+.++.+++.++-++.++.......... ....... ..+....++.=.+.
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~---a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYL---AGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGG---GGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHH---hhhHHHHHHHHHHH
Confidence 3344566678889999999999999999999999988877666643210000000 0000000 00244555666778
Q ss_pred ccchhhhccccchhhcccccCCCCCcceeehhhHHHHHHHHHHHhhccccceecccc-----cc-hhhHhHHHHHHHHHH
Q 012918 364 GFPLAITYSVPFAITAELTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDALFGG-----GN-IPAFVLASLSALAGG 437 (453)
Q Consensus 364 Gi~~a~~~~vP~aLise~~p~~~r~~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~-----~~-~~~f~~~a~~~liaa 437 (453)
|++.|....+-..+++|..|.+ .+|...+..+.+..++++++......+....+. .. ...+.+..+.+++..
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~--~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAH--IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGG--GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHH--hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh
Confidence 9988888888888999999986 678889999999999988877665444332211 11 112333334344333
Q ss_pred HHhheeccCC
Q 012918 438 VVATLKLPHL 447 (453)
Q Consensus 438 ~~v~~~vpet 447 (453)
...+++||+
T Consensus 215 -~~~~~~peS 223 (491)
T 4gc0_A 215 -MLLYTVPES 223 (491)
T ss_dssp -HHGGGSCCC
T ss_pred -hhhhcCCCC
Confidence 345678987
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.02 E-value=3.8e-07 Score=92.39 Aligned_cols=185 Identities=13% Similarity=0.036 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccceeeeecCCCCCCChhhhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHhhhhcC
Q 012918 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (453)
Q Consensus 229 ~~l~~l~~~~f~~w~g~~~~~~y~t~~vg~~if~g~p~~~~~~~~~y~~gv~~g~~~l~~~s~~~~i~s~~~~~l~d~~g 308 (453)
|.++.++...++.++++..+.-|.+.|+.+. ++-++ . ..| +.+..+.+...+.+.+.+++.||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~---------~----~~g-~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-NHISK---------S----DTG-IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-TCCCT---------T----TSH-HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCH---------H----HHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777777777776777777776442 22221 1 122 4455667788889999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhhccccCCcccCCCCchhHHHHHHHHHHHhccchhhhccccchhhcccccCCCCC
Q 012918 309 SRLVWAISNFIVFACMATTAIISVISVREYSGGIEHGIGANQAIKVASLVVFTLLGFPLAITYSVPFAITAELTADSGGG 388 (453)
Q Consensus 309 rr~l~~~g~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~a~~~~vP~aLise~~p~~~r~ 388 (453)
||++++.+..+++++........... . .....+......|+..+.......+++.++.++..|.
T Consensus 72 rr~~l~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 135 (417)
T 2cfq_A 72 LRKYLLWIITGMLVMFAPFFIFIFGP-L---------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135 (417)
T ss_dssp TCCHHHHHHHHTTSCHHHHHHHTHHH-H---------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Confidence 99999987766544221111100000 0 0000011112223333322222223444554432234
Q ss_pred cceeehhhHHHHHHHHHHHhhccccceecccccchhhHhHHHHHHHHHHHHhheeccCC
Q 012918 389 QGLAIGVLNLAIVIPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAGGVVATLKLPHL 447 (453)
Q Consensus 389 ~G~~~gi~n~~~~l~q~i~s~~~g~l~~~~g~~~~~~f~~~a~~~liaa~~v~~~vpet 447 (453)
+|...|..+....++..+.+.+.+.+.+. + ....|++.++..++..+...+..||+
T Consensus 136 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 136 SNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 56667777666666777777766666542 3 23467777776665555444445554
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=30.06 E-value=18 Score=20.22 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=10.8
Q ss_pred HHHhhhhcCcchh
Q 012918 300 IEPMCRWIGSRLV 312 (453)
Q Consensus 300 ~~~l~d~~grr~l 312 (453)
.+++++++|||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4789999999874
Done!