BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012919
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 270
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 215 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 274
L + +++ + FL+++G++ Q + + A+ + + +K V +L+ S
Sbjct: 32 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 91
Query: 275 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 329
+ +++ + P ++++S+ E+L +F+ +++SV L+ R P+ L S+E +
Sbjct: 92 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 149
Query: 330 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 385
+ + LE GF EI MI+R + T LTE ++F M +VKFP
Sbjct: 150 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 205
Query: 386 QYFGYSLEERIKPRY 400
Q F L ++K R+
Sbjct: 206 QVFNTRL-FKVKERH 219
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 41/162 (25%)
Query: 146 LDSSGDLRPQILYLIELGMDLEKI-KLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQ 204
LD D++ +L+L ++G++ ++ +T+ FS LE +K V +L KA
Sbjct: 35 LDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSE-DLEN-LKTRVAYLHSKNFSKAD 92
Query: 205 IPTILGKRPQLCGISLSENLIPTMTFLEN------------------------------- 233
+ ++ K P L S+ E L + F +
Sbjct: 93 VAQMVRKAPFLLNFSV-ERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENM 151
Query: 234 ------LGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEM 269
LG + +I R P +LT ++ K+ +T DF++ +
Sbjct: 152 KVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 193
>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription
Termination Factor 3
Length = 298
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 215 LCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAE 274
L + +++ + FL+++G++ Q + + A+ + + +K V +L+ S
Sbjct: 60 LLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKA 119
Query: 275 SIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV-----LLQRCPQSLGCSIEANLK 329
+ +++ + P ++++S+ E+L +F+ +++SV L+ R P+ L S+E +
Sbjct: 120 DVAQMVRKAPFLLNFSV-ERLDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKE 177
Query: 330 PVTEFFLERGFTVEEIGTMISRFGALYT---FSLTENLIPKWEFFLT-MDYDKSELVKFP 385
+ + LE GF EI MI+R + T LTE ++F M +VKFP
Sbjct: 178 NMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTET----FDFVHNVMSIPHHIIVKFP 233
Query: 386 QYFGYSLEERIKPRY 400
Q F L ++K R+
Sbjct: 234 QVFNTRL-FKVKERH 247
>pdb|4FP9|B Chain B, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|E Chain E, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|G Chain G, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|H Chain H, Human Mterf4-Nsun4 Protein Complex
Length = 335
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 191 VVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPA 250
V+ LLD+G A I +L R G SL + L+ ++ LG++ V+++ P
Sbjct: 49 VMSSLLDMGFSNAHINELLSVRR---GASL-QQLLDIISEFILLGLNPEPVCVVLKKSPQ 104
Query: 251 VLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY---SIEEKLRPTAEYFRSLGV 307
+L ++++ +L ++GL + +VL CP I + I + +R E
Sbjct: 105 LLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQ 164
Query: 308 DVSVLLQRCPQSL 320
V+ +L CP L
Sbjct: 165 QVTKILHSCPSVL 177
>pdb|3MVA|O Chain O, Crystal Structure Of Human Mterf1 Bound To The Termination
Sequence
Length = 343
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 159 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 218
L+ +G+D I + +R P ++ + + + FLL G K I +I+ + P+ I
Sbjct: 26 LLTMGVD---IDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPR--AI 79
Query: 219 SLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT--VDFLYEMGLSAES 275
+ + ENL + + +++R P S + + FLY +GL+ +
Sbjct: 80 TRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKC 139
Query: 276 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 309
+ ++LT P S S++ + E+ ++ G+ +
Sbjct: 140 LCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 172
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 138 KAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
+AI+R E L DL +I+ DLE + ++ R +F + ++ ++FL
Sbjct: 77 RAITRTPENLSKRWDLWRKIV-----TSDLEIVNILERSPESFFRSNNNLNLENNIKFLY 131
Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA-KVIQRFPA 250
+G+ + + +L P+ SL N + FL+ G+ D + K+I + P
Sbjct: 132 SVGLTRKCLCRLLTNAPRTFSNSLDLNK-QMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 190
Query: 251 VLTYSRQKVKQTVDFL 266
+L S ++VK ++FL
Sbjct: 191 ILIQSTKRVKANIEFL 206
>pdb|3N6S|A Chain A, Crystal Structure Of Human Mitochondrial Mterf In Complex
With A 15- Mer Dna Encompassing The Trnaleu(Uur) Binding
Sequence
Length = 353
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 159 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 218
L+ +G+D I + +R P ++ + + + FLL G K I +I+ + P+ I
Sbjct: 27 LLTMGVD---IDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPR--AI 80
Query: 219 SLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT--VDFLYEMGLSAES 275
+ + ENL + + +++R P S + + FLY +GL+ +
Sbjct: 81 TRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKC 140
Query: 276 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 309
+ ++LT P S S++ + E+ ++ G+ +
Sbjct: 141 LCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 173
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 138 KAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
+AI+R E L DL +I+ DLE + ++ R +F + ++ ++FL
Sbjct: 78 RAITRTPENLSKRWDLWRKIV-----TSDLEIVNILERSPESFFRSNNNLNLENNIKFLY 132
Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA-KVIQRFPA 250
+G+ + + +L P+ SL N + FL+ G+ D + K+I + P
Sbjct: 133 SVGLTRKCLCRLLTNAPRTFSNSLDLNK-QMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 191
Query: 251 VLTYSRQKVKQTVDFL 266
+L S ++VK ++FL
Sbjct: 192 ILIQSTKRVKANIEFL 207
>pdb|3N7Q|A Chain A, Crystal Structure Of Human Mitochondrial Mterf Fragment
(Aa 99-399) In Complex With A 12-Mer Dna Encompassing
The Trnaleu(Uur) Binding Sequence
Length = 310
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 194 FLLDLGIPKAQIPTILGKRPQLCGISLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVL 252
FLL G K I +I+ + P+ I+ + ENL + + +++R P
Sbjct: 15 FLLSKGASKEVIASIISRYPR--AITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESF 72
Query: 253 TYSRQKVKQT--VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 309
S + + FLY +GL+ + + ++LT P S S++ + E+ ++ G+ +
Sbjct: 73 FRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 130
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 138 KAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
+AI+R E L DL +I+ DLE + ++ R +F + ++ ++FL
Sbjct: 35 RAITRTPENLSKRWDLWRKIV-----TSDLEIVNILERSPESFFRSNNNLNLENNIKFLY 89
Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA-KVIQRFPA 250
+G+ + + +L P+ SL N + FL+ G+ D + K+I + P
Sbjct: 90 SVGLTRKCLCRLLTNAPRTFSNSLDLNK-QMVEFLQAAGLSLGHNDPADFVRKIIFKNPF 148
Query: 251 VLTYSRQKVKQTVDFL 266
+L S ++VK ++FL
Sbjct: 149 ILIQSTKRVKANIEFL 164
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 324 IEANLKPVTEFFLERGFTVEE-----IGTMISR---FGALYTFSLTENLIPKW 368
++ NL +T F +E+G TVEE +G M SR G L S T + + KW
Sbjct: 237 LKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKW 289
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 324 IEANLKPVTEFFLERGFTVEE-----IGTMISR---FGALYTFSLTENLIPKW 368
++ NL +T F +E+G TVEE +G M SR G L S T + + KW
Sbjct: 228 LKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKW 280
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 324 IEANLKPVTEFFLERGFTVEE-----IGTMISR---FGALYTFSLTENLIPKW 368
++ NL +T F +E+G TVEE +G M SR G L S T + + KW
Sbjct: 233 LKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKW 285
>pdb|3MVB|O Chain O, Crystal Structure Of A Triple Rfy Mutant Of Human Mterf1
Bound To The Termination Sequence
Length = 343
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 159 LIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGI 218
L+ +G+D I + +R P ++ + + + FLL G K I +I+ + P+ I
Sbjct: 26 LLTMGVD---IDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPR--AI 79
Query: 219 SLS-ENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQT--VDFLYEMGLSAES 275
+ + ENL + + +++ P S + + FLY +GL+ +
Sbjct: 80 TRTPENLSKRWDLWRKIVTSDLEIVNILEASPESFFRSNNNLNLENNIKFLYSVGLTRKC 139
Query: 276 IGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV 309
+ ++LT P S S++ + E+ ++ G+ +
Sbjct: 140 LCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 172
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 138 KAISRVSE-LDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196
+AI+R E L DL +I+ DLE + ++ +F + ++ ++FL
Sbjct: 77 RAITRTPENLSKRWDLWRKIV-----TSDLEIVNILEASPESFFRSNNNLNLENNIKFLY 131
Query: 197 DLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGV-----DKTQWA-KVIQRFPA 250
+G+ + + +L P+ SL N + FL+ G+ D + K+I + PA
Sbjct: 132 SVGLTRKCLCRLLTNAPRTFSNSLDLNK-QMVEFLQAAGLSLGHNDPADFVRKIIFKNPA 190
Query: 251 VLTYSRQKVKQTVDFL 266
+L S ++VK ++FL
Sbjct: 191 ILIQSTKRVKANIEFL 206
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 313 LQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL 372
LQ Q LG SI L P+ G+TVE ++ + + N IP W +
Sbjct: 455 LQLTVQELGLSIREKLNPICFIINNDGYTVER---------EIHGPTQSYNDIPMWNY-- 503
Query: 373 TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGVKLL 411
K P+ FG + E+R+ + R + V ++
Sbjct: 504 ---------SKLPETFG-ATEDRVVSKIVRTENEFVSVM 532
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 210 GKRPQLCGISLSENL--IPTMTFLE-----NLGVDKTQWAKV-IQRFPAVLTYSRQKVKQ 261
G PQ+C I L + I +M F+E V + + + + P + QK K
Sbjct: 159 GLEPQVCVIELGGTVGDIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKP 218
Query: 262 TVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKL 295
T + + E+ S V+ RC N + S++EK+
Sbjct: 219 TQNSVRELRGLGLSPDLVVCRCSNPLDTSVKEKI 252
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 144 SELDSSGDLRPQILYLIE-LGMDL--EKIKLITRRFPAF---SYYSLEGKIKPVVEFLLD 197
S+L + +LR Q+L LI G E +K I+ F A+ YSLE KI+ ++ FLL+
Sbjct: 406 SQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLE 465
>pdb|3V4P|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 597
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 353 GALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFGYSL 392
G+L+ +++T N K++ FL DK VKF Y GYS+
Sbjct: 190 GSLFVYNITTN---KYKAFL----DKQNQVKFGSYLGYSV 222
>pdb|4FZV|B Chain B, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 239
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 234 LGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISY---S 290
LG++ V+++ P +L ++++ +L ++GL + +VL CP I +
Sbjct: 43 LGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD 102
Query: 291 IEEKLRPTAEYFRSLGVDVSVLLQRCPQSL 320
I + +R E V+ +L CP L
Sbjct: 103 INDTVRLLKEKCLFTVQQVTKILHSCPSVL 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,699,190
Number of Sequences: 62578
Number of extensions: 451301
Number of successful extensions: 1101
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 35
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)