Query 012919
Match_columns 453
No_of_seqs 248 out of 1362
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 18:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 1.6E-47 5.4E-52 385.9 22.1 304 86-429 20-341 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 5.2E-43 1.8E-47 341.7 14.3 243 153-432 6-260 (270)
3 3mva_O Transcription terminati 100.0 1E-35 3.5E-40 299.7 20.2 278 150-440 17-319 (343)
4 4fp9_B Mterf domain-containing 100.0 2E-33 6.8E-38 280.0 16.3 200 188-428 46-260 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 2.7E-31 9.2E-36 258.8 13.5 193 141-338 30-225 (270)
6 4fp9_B Mterf domain-containing 99.9 5.5E-27 1.9E-31 233.5 14.9 181 151-340 45-227 (335)
7 4fzv_B Mterf domain-containing 99.3 3.2E-11 1.1E-15 103.3 13.6 159 263-426 37-213 (239)
8 4fzv_B Mterf domain-containing 98.9 1.2E-08 4.1E-13 87.4 11.4 148 188-340 33-182 (239)
9 1oqy_A HHR23A, UV excision rep 91.2 0.32 1.1E-05 48.4 6.7 45 149-202 165-209 (368)
10 4ae4_A Ubiquitin-associated pr 90.9 5.3 0.00018 32.9 12.8 101 153-303 9-112 (118)
11 2cos_A Serine/threonine protei 75.5 3.5 0.00012 28.9 4.0 40 332-378 13-52 (54)
12 3ff5_A PEX14P, peroxisomal bio 72.7 7.9 0.00027 27.2 5.3 24 259-282 30-53 (54)
13 3ff5_A PEX14P, peroxisomal bio 72.3 5.4 0.00018 28.1 4.4 24 328-351 30-53 (54)
14 1ify_A HHR23A, UV excision rep 69.3 12 0.00042 25.5 5.7 38 152-197 8-45 (49)
15 2ooa_A E3 ubiquitin-protein li 68.3 13 0.00043 25.9 5.4 44 150-201 9-52 (52)
16 4ae4_A Ubiquitin-associated pr 66.8 44 0.0015 27.3 9.6 92 261-372 10-112 (118)
17 2cos_A Serine/threonine protei 63.3 13 0.00045 26.0 4.8 46 150-202 7-52 (54)
18 2w84_A Peroxisomal membrane pr 59.6 11 0.00037 28.0 4.0 26 328-353 35-60 (70)
19 2knz_A Ubiquilin-4; cytoplasm, 58.0 23 0.00078 24.5 5.5 43 150-200 9-52 (53)
20 2w84_A Peroxisomal membrane pr 57.2 13 0.00045 27.5 4.1 25 259-283 35-59 (70)
21 2d9s_A CBL E3 ubiquitin protei 54.3 37 0.0013 23.7 5.8 43 150-200 7-49 (53)
22 1vg5_A RSGI RUH-014, rhomboid 49.2 46 0.0016 24.8 6.2 42 148-197 25-66 (73)
23 2g3q_A Protein YBL047C; endocy 49.2 30 0.001 22.5 4.7 37 153-197 5-41 (43)
24 2jy5_A Ubiquilin-1; UBA, alter 47.7 39 0.0013 23.2 5.3 41 148-196 8-49 (52)
25 2knz_A Ubiquilin-4; cytoplasm, 47.1 34 0.0012 23.6 4.9 39 258-304 10-49 (53)
26 1wji_A Tudor domain containing 45.1 45 0.0015 24.0 5.4 39 153-199 10-48 (63)
27 1wgn_A UBAP1, ubiquitin associ 43.7 28 0.00097 25.1 4.0 38 153-198 20-57 (63)
28 1ify_A HHR23A, UV excision rep 42.3 35 0.0012 23.1 4.3 38 259-304 8-45 (49)
29 1z96_A DNA-damage, UBA-domain 41.9 63 0.0022 20.3 5.5 35 153-195 5-39 (40)
30 3ugm_A TAL effector avrbs3/PTH 41.7 1.3E+02 0.0044 32.4 10.1 17 39-55 320-336 (1047)
31 2ooa_A E3 ubiquitin-protein li 39.9 58 0.002 22.5 4.9 25 258-282 10-34 (52)
32 2dah_A Ubiquilin-3; UBA domain 38.9 53 0.0018 22.8 4.8 44 148-199 5-49 (54)
33 1veg_A NEDD8 ultimate buster-1 38.7 53 0.0018 25.1 5.2 38 152-197 29-66 (83)
34 2dkl_A Trinucleotide repeat co 38.4 72 0.0025 24.4 6.0 42 153-202 22-63 (85)
35 2dak_A Ubiquitin carboxyl-term 38.2 53 0.0018 23.4 4.9 39 151-197 8-46 (63)
36 1wiv_A UBP14, ubiquitin-specif 37.1 61 0.0021 24.0 5.2 40 151-198 28-67 (73)
37 1vg5_A RSGI RUH-014, rhomboid 36.8 39 0.0013 25.2 4.1 37 259-303 29-65 (73)
38 3idw_A Actin cytoskeleton-regu 36.1 26 0.0009 26.0 2.9 16 156-171 6-21 (72)
39 1wji_A Tudor domain containing 36.1 53 0.0018 23.6 4.6 36 261-304 11-46 (63)
40 1uxc_A FRUR (1-57), fructose r 32.8 64 0.0022 23.1 4.6 47 232-278 8-54 (65)
41 1vej_A Riken cDNA 4931431F19; 32.3 97 0.0033 23.0 5.6 42 148-197 25-67 (74)
42 3dfg_A Xcrecx, regulatory prot 32.0 2.3E+02 0.008 23.9 9.5 22 261-282 137-158 (162)
43 3dfg_A Xcrecx, regulatory prot 31.4 45 0.0015 28.6 4.3 24 153-176 136-159 (162)
44 1oqy_A HHR23A, UV excision rep 30.2 21 0.00071 35.3 2.1 38 187-232 167-204 (368)
45 3e3v_A Regulatory protein RECX 29.7 2.7E+02 0.0092 23.9 9.5 111 222-351 50-162 (177)
46 3ayh_A DNA-directed RNA polyme 29.5 41 0.0014 28.1 3.5 41 245-285 63-103 (136)
47 3d5l_A Regulatory protein RECX 29.4 3.1E+02 0.01 24.5 10.1 112 222-352 93-206 (221)
48 1wgn_A UBAP1, ubiquitin associ 29.1 50 0.0017 23.8 3.3 35 261-303 21-55 (63)
49 2juj_A E3 ubiquitin-protein li 29.0 1.5E+02 0.0051 20.7 6.0 43 151-201 6-48 (56)
50 2ekk_A UBA domain from E3 ubiq 28.8 1.1E+02 0.0037 20.2 5.0 38 151-197 8-45 (47)
51 1wiv_A UBP14, ubiquitin-specif 28.7 84 0.0029 23.2 4.8 35 261-303 31-65 (73)
52 2cpw_A CBL-interacting protein 28.4 1.2E+02 0.0042 21.6 5.5 38 154-198 21-58 (64)
53 2oo9_A E3 ubiquitin-protein li 28.0 1.3E+02 0.0043 20.3 4.9 40 151-198 3-42 (46)
54 1veg_A NEDD8 ultimate buster-1 27.1 86 0.0029 23.9 4.6 37 260-304 30-66 (83)
55 2lbc_A Ubiquitin carboxyl-term 26.6 2.5E+02 0.0086 22.6 8.1 38 154-198 5-42 (126)
56 1p32_A Mitochondrial matrix pr 26.2 39 0.0013 30.4 3.0 27 27-53 160-186 (209)
57 2dai_A Ubadc1, ubiquitin assoc 23.8 1.4E+02 0.0047 22.7 5.2 40 151-198 28-67 (83)
58 3jv1_A P22 protein; MAM33 fami 23.7 48 0.0016 29.1 3.0 27 27-53 135-161 (182)
59 1yqf_A Hypothetical protein LM 23.4 54 0.0018 29.3 3.4 26 27-52 156-181 (203)
60 3c1d_A Protein ORAA, regulator 22.9 2.2E+02 0.0077 23.9 7.2 57 187-247 48-105 (159)
61 2dag_A Ubiquitin carboxyl-term 22.3 1.2E+02 0.0042 22.3 4.6 40 152-198 9-48 (74)
62 2cwb_A Chimera of immunoglobul 22.3 1.8E+02 0.0061 23.3 5.9 44 148-199 62-106 (108)
63 2bwb_A Ubiquitin-like protein 22.3 1.6E+02 0.0053 19.5 4.7 39 151-197 6-45 (46)
64 2cp8_A NEXT to BRCA1 gene 1 pr 21.4 2.1E+02 0.0071 19.9 5.3 45 148-199 5-49 (54)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.6e-47 Score=385.92 Aligned_cols=304 Identities=19% Similarity=0.265 Sum_probs=270.3
Q ss_pred HhhHHHHHHhhhhhhhhHHHHHHcCCCCCCcccccccccCCCCCCCCChHHHhhccccccCCCCCChHHHHHHHHhcCCC
Q 012919 86 DALTPYLESLLEEYGNVLVDLVENFPNAPPPAKQKAVAPVSPPVSTLDSKKLKAISRVSELDSSGDLRPQILYLIELGMD 165 (453)
Q Consensus 86 ~~~~~~lEslg~~~~~~l~~~v~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~r~l~~~~~~~l~~~l~~L~~lGls 165 (453)
+.++.||.++|++.. ..++.+|.+ .+.+.++++++++||.++|++
T Consensus 20 ~~~v~~L~s~Gl~~~----~~~~~~p~l-------------------------------~~~s~~~~~~vl~fL~~~G~s 64 (343)
T 3mva_O 20 EDLLKNLLTMGVDID----MARKRQPGV-------------------------------FHRMITNEQDLKMFLLSKGAS 64 (343)
T ss_dssp CCHHHHHHHHTCCHH----HHHHHCGGG-------------------------------GGCSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHH----HHHHhCchh-------------------------------hccCcccHHHHHHHHHHcCCC
Confidence 457789999999833 345556553 134567889999999999999
Q ss_pred HHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCc-ccCCcccchHHHHHHHHHhCCChhhHHHH
Q 012919 166 LEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQL-CGISLSENLIPTMTFLENLGVDKTQWAKV 244 (453)
Q Consensus 166 ~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~l-L~~s~e~~l~~~l~fL~~lGvs~~~i~~i 244 (453)
.++|++++.++|.+|.+++ +++.|+++||+++|++++++++++.++|++ ++.+.+++++|+++||+++|++.++++++
T Consensus 65 ~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~l 143 (343)
T 3mva_O 65 KEVIASIISRYPRAITRTP-ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRL 143 (343)
T ss_dssp HHHHHHHHHHCGGGGGCCH-HHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHhCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999996 489999999999999999999999999995 55443248999999999999999999999
Q ss_pred HHhcccccccchhhHHHHHHHHHHcCCC------hHHHHHHhhhCCceeEechhhcHHHHHHHHhh-cCCChhH---HHh
Q 012919 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLS------AESIGKVLTRCPNIISYSIEEKLRPTAEYFRS-LGVDVSV---LLQ 314 (453)
Q Consensus 245 l~~~P~iL~~s~~~l~~~v~fL~~lG~~------~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~-lG~~~~~---ii~ 314 (453)
+.++|++|+++.+++++++++|+++|++ .+.|.+++.++|++++++ +++++++++||++ +|++..+ ++.
T Consensus 144 l~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~ 222 (343)
T 3mva_O 144 LTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLIC 222 (343)
T ss_dssp HHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 9999999999999889999999977664 778999999999999999 6799999999995 9998643 444
Q ss_pred h-cccccccccccccchhHHHHH----HhCCChHHHHHHhhhccccccccchhhHhHHHHHHHHcCCChHHHhhcCcccc
Q 012919 315 R-CPQSLGCSIEANLKPVTEFFL----ERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDKSELVKFPQYFG 389 (453)
Q Consensus 315 ~-~P~iL~~s~e~~l~~~~~~L~----~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~~~g~~~~~l~~~P~~L~ 389 (453)
+ .|.+++.+. +.+++++.++. ++|++.+|+..|+.++|.++++| +++|++|++||.+||++.++|+++|++|+
T Consensus 223 ~~~~~~l~~s~-~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s-~~~l~~k~~fl~~mg~~~~~i~~~P~~l~ 300 (343)
T 3mva_O 223 GPGAEILDLSN-DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEENISISQIIENPRVLD 300 (343)
T ss_dssp TTTGGGGGCCT-THHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSC-HHHHHHHHHHHHTTTCCHHHHHHSGGGGG
T ss_pred cCChHHhhccH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhccc-HHHHHHHHHHHHHcCCCHHHHHhCCHHHh
Confidence 5 468899985 67888887766 68999999999999999999999 57899999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhCcccChh--hhhccchHhHHHHHHH
Q 012919 390 YSLEERIKPRYARVKVHGVKLLLN--QVLSLSGSNFENVLKK 429 (453)
Q Consensus 390 ~Sle~rIkpR~~~L~~lg~~~~L~--~~L~~sd~~F~~~~~~ 429 (453)
||+| ||+|||++|++.|.++.+. +||++||++|+++|.+
T Consensus 301 ~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~~ 341 (343)
T 3mva_O 301 SSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLKK 341 (343)
T ss_dssp SCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHhc
Confidence 9999 9999999999999998888 9999999999998875
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=5.2e-43 Score=341.67 Aligned_cols=243 Identities=25% Similarity=0.408 Sum_probs=218.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHH
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE 232 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~ 232 (453)
.++++||.++|++.++|.+....+|.+|+++++++++|+++||.++|+++++|++++.++|++|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 5789999999999999988777777779999888899999999999999999999999999999999965 999999999
Q ss_pred HhCCChhhHHHHHHhcccccccchhhHHHHHHHH-HHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChhH
Q 012919 233 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSV 311 (453)
Q Consensus 233 ~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL-~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~~ 311 (453)
++|++++++++++.++|++|+++.++++++++|| +++|++.+++.+++.++|++++++.+ +++
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~--------------- 148 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVK--------------- 148 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHH---------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHH---------------
Confidence 9999999999999999999999999999999999 58999999999999999999988864 333
Q ss_pred HHhhcccccccccccccchhHHHH-HHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCcccc
Q 012919 312 LLQRCPQSLGCSIEANLKPVTEFF-LERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFG 389 (453)
Q Consensus 312 ii~~~P~iL~~s~e~~l~~~~~~L-~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~ 389 (453)
++++++ .++|++.+|+..|+.++|.++++| ++++++|++||. +||++.++|+++|++|+
T Consensus 149 ------------------~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~ 209 (270)
T 3m66_A 149 ------------------ENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFN 209 (270)
T ss_dssp ------------------HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGG
T ss_pred ------------------HHHHHHHHHcCCCHHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhh
Confidence 445654 589999999999999999999999 599999999998 89999999999999999
Q ss_pred ccccccchhhHHHHHHhCcc---------cChhhhhccchHhHHHHHHHHHH
Q 012919 390 YSLEERIKPRYARVKVHGVK---------LLLNQVLSLSGSNFENVLKKKIE 432 (453)
Q Consensus 390 ~Sle~rIkpR~~~L~~lg~~---------~~L~~~L~~sd~~F~~~~~~~~~ 432 (453)
||+| ||+|||.+++.+|.+ ++|.+++.+||++|++++++.+.
T Consensus 210 ~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~ 260 (270)
T 3m66_A 210 TRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASV 260 (270)
T ss_dssp SCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCH
T ss_pred CCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCH
Confidence 9999 999999999998753 46788999999999999866543
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1e-35 Score=299.68 Aligned_cols=278 Identities=18% Similarity=0.321 Sum_probs=243.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHH
Q 012919 150 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMT 229 (453)
Q Consensus 150 ~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~ 229 (453)
...+.+++||.++|++.+++ +..+|.++..+++ +.+++++||+++|+++++|++++.++|.+|.+++ +++.|+++
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~ 91 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMA---RKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWD 91 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHH---HHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHH---HHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHH
Confidence 45678999999999997765 5579999988875 7999999999999999999999999999999996 79999999
Q ss_pred HHHHhCCChhhHHHHHHhccc-ccccchh-hHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCC
Q 012919 230 FLENLGVDKTQWAKVIQRFPA-VLTYSRQ-KVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGV 307 (453)
Q Consensus 230 fL~~lGvs~~~i~~il~~~P~-iL~~s~~-~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~ 307 (453)
||+++|++++++.+++.++|+ +++.+.+ ++.++++||+++|++.++|++++.++|++|+++++ ++++++++|+++|+
T Consensus 92 fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv 170 (343)
T 3mva_O 92 LWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGL 170 (343)
T ss_dssp HHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCC
Confidence 999999999999999999999 5555554 79999999999999999999999999999999997 55999999998765
Q ss_pred C---------hhHHHhhcccccccccccccchhHHHHH-HhCCChHHHHHHhhhcc-ccccccchhhHhHHHHHHH----
Q 012919 308 D---------VSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIGTMISRFG-ALYTFSLTENLIPKWEFFL---- 372 (453)
Q Consensus 308 ~---------~~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~G~s~eev~~mi~~~P-~lL~~sl~~~L~~k~~fL~---- 372 (453)
+ +.+++.++|.+++++ +++++++++||+ ++|++.+++..++.+.| .+++++ .+.++++++|+.
T Consensus 171 ~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~~l~e~~~ 248 (343)
T 3mva_O 171 SLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYANIKEKLF 248 (343)
T ss_dssp HTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHHHHHHHHH
Confidence 3 356899999999999 789999999999 59999999999998864 789999 589999998887
Q ss_pred HcCCChHHH----hhcCccccccccccchhhHHHHHHhCcccC----hhhhhccchHhHHHHHHHHHHhhhccCCC
Q 012919 373 TMDYDKSEL----VKFPQYFGYSLEERIKPRYARVKVHGVKLL----LNQVLSLSGSNFENVLKKKIEKALSDGGH 440 (453)
Q Consensus 373 ~~g~~~~~l----~~~P~~L~~Sle~rIkpR~~~L~~lg~~~~----L~~~L~~sd~~F~~~~~~~~~~~~~~~~~ 440 (453)
++|++.+++ .++|++|.+|.| +|+++++|+..+|.... ..++|..|- ++++.||+.+.+.|+.
T Consensus 249 ~lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sl----eri~~R~~~L~~~g~~ 319 (343)
T 3mva_O 249 SLGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSI----STLKSRIKELVNAGCN 319 (343)
T ss_dssp TTTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCH----HHHHHHHHHHHTTTCC
T ss_pred HcCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCH----HHHHHHHHHHHHCCCC
Confidence 589999886 799999999988 59999999998776532 235677665 4889999999999874
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=279.98 Aligned_cols=200 Identities=22% Similarity=0.397 Sum_probs=165.8
Q ss_pred hHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH
Q 012919 188 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY 267 (453)
Q Consensus 188 l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~ 267 (453)
++..+..|.++|+++++|+++++++|.++. +++.+.+.||..+|++.++|+++|.++|++|+++.++++++++||+
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~ 121 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHH
Confidence 566777777888888888888888887753 4567777788778888888888888888888887777888888888
Q ss_pred HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCChhHHHhhcccccccccccccchhHHHHH-HhCCChHHHH
Q 012919 268 EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFL-ERGFTVEEIG 346 (453)
Q Consensus 268 ~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~G~s~eev~ 346 (453)
++|++.+++++++.+||++|+++.+ ++ ..++.+|. ++||+.+++.
T Consensus 122 ~lGl~~~~i~~ll~~~P~lL~~s~e-~i---------------------------------~~~v~~L~~~lGfS~~ev~ 167 (335)
T 4fp9_B 122 KLGLGEGKLKRVLYCCPEIFTMRQQ-DI---------------------------------NDTVRLLKEKCLFTVQQVT 167 (335)
T ss_dssp HTTCTTTTHHHHHHHCGGGGTSCHH-HH---------------------------------HHHHHHHHHTSCCCHHHHH
T ss_pred HcCCCHHHHHHHHHhCchhhccChH-HH---------------------------------HHHHHHHHHHcCCCHHHHH
Confidence 8888877777777777777777753 33 34455664 7899999999
Q ss_pred HHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCccccccccccchhhHHHHHHhCc-------------ccCh
Q 012919 347 TMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV-------------KLLL 412 (453)
Q Consensus 347 ~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~~Sle~rIkpR~~~L~~lg~-------------~~~L 412 (453)
.||.++|.+|++| +++|++|++||. +||++..+|++ |++|+||++ ||+|||.||+.+|. +++|
T Consensus 168 ~mv~r~P~lL~~S-~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL 244 (335)
T 4fp9_B 168 KILHSCPSVLRED-LGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLL 244 (335)
T ss_dssp HHHHHCGGGGTSC-HHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCH
T ss_pred HHHHhCChhhhCC-HHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccH
Confidence 9999999999999 689999999999 89999999998 999999998 99999999999986 2458
Q ss_pred hhhhccchHhHHHHHH
Q 012919 413 NQVLSLSGSNFENVLK 428 (453)
Q Consensus 413 ~~~L~~sd~~F~~~~~ 428 (453)
.+++.+||++||.+++
T Consensus 245 ~~il~~sd~~F~~~vA 260 (335)
T 4fp9_B 245 KDILRVSEAEFLARTA 260 (335)
T ss_dssp HHHTTSCHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHH
Confidence 9999999999998863
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=2.7e-31 Score=258.82 Aligned_cols=193 Identities=21% Similarity=0.367 Sum_probs=177.4
Q ss_pred cccccCCCCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCc
Q 012919 141 SRVSELDSSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISL 220 (453)
Q Consensus 141 ~r~l~~~~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~ 220 (453)
+.++.++.++++.++++||.++|++.++|++++.++|.++++++++ ++|+++||+++|++.++|++++.++|++|++++
T Consensus 30 p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~ 108 (270)
T 3m66_A 30 NLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSV 108 (270)
T ss_dssp HHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCH
T ss_pred hhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCH
Confidence 3446777888999999999999999999999999999999999986 999999999999999999999999999999999
Q ss_pred ccchHHHHHHH-HHhCCChhhHHHHHHhcccccccchhhHHHHHHHH-HHcCCChHHHHHHhhhCCceeEechhhcHHHH
Q 012919 221 SENLIPTMTFL-ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFL-YEMGLSAESIGKVLTRCPNIISYSIEEKLRPT 298 (453)
Q Consensus 221 e~~l~~~l~fL-~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL-~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~ 298 (453)
+ +++++++|| +++|++.+++.+++.++|++++++.++++++++++ +++|++.++|.+++.++|+++++|. ++++++
T Consensus 109 ~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~-~~l~~k 186 (270)
T 3m66_A 109 E-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANK-MKLTET 186 (270)
T ss_dssp H-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHH
T ss_pred H-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH-HHHHHH
Confidence 5 799999999 58999999999999999999999999999999976 6999999999999999999999997 699999
Q ss_pred HHHHh-hcCCChhHHHhhcccccccccccccchhHHHHHHh
Q 012919 299 AEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLER 338 (453)
Q Consensus 299 v~~L~-~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~ 338 (453)
++||. ++|++...+ .++|.+|++|++ +++||+.|++.+
T Consensus 187 ~~fL~~~mg~~~~~i-~~~P~~l~~Sle-ri~pR~~~l~~L 225 (270)
T 3m66_A 187 FDFVHNVMSIPHHII-VKFPQVFNTRLF-KVKERHLFLTYL 225 (270)
T ss_dssp HHHHHTTSCCCHHHH-HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHH-HhCchHhhCCHH-HHHHHHHHHHHh
Confidence 99995 589987764 578999999987 888888887754
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=233.55 Aligned_cols=181 Identities=18% Similarity=0.364 Sum_probs=168.3
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHH
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTF 230 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~f 230 (453)
.+..++..|.++|+++++|++++..+|.++. .++.+++.+|..+|++.++|+++|.++|++|++++ ++++++++|
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~f 119 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSY 119 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCH-HHHHHHHHH
Confidence 4678889999999999999999999999864 35789999999999999999999999999999998 689999999
Q ss_pred HHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH-HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh-hcCCC
Q 012919 231 LENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY-EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVD 308 (453)
Q Consensus 231 L~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~-~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~-~lG~~ 308 (453)
|+++|++.+++.+++.++|++|+++.+++..++.+|+ ++|++.++|.+|+.+||++|++|. ++|+++++||. .||++
T Consensus 120 L~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mgl~ 198 (335)
T 4fp9_B 120 LQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIK 198 (335)
T ss_dssp HHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTCCC
T ss_pred HHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999996 899999999999999999999996 58999999997 59999
Q ss_pred hhHHHhhcccccccccccccchhHHHHHHhCC
Q 012919 309 VSVLLQRCPQSLGCSIEANLKPVTEFFLERGF 340 (453)
Q Consensus 309 ~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~ 340 (453)
+..|+. |++|++|++ +|++|+.||..+|.
T Consensus 199 ~~eIvk--P~~l~ySLe-RIkpRH~fL~~lG~ 227 (335)
T 4fp9_B 199 HPDIVK--SEYLQYSLT-KIKQRHIYLERLGR 227 (335)
T ss_dssp HHHHHH--TTGGGSCHH-HHHHHHHHHHHHTS
T ss_pred HHHccc--cchhhccHH-HHHHHHHHHHHcCC
Confidence 888763 899999986 89999999998887
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.30 E-value=3.2e-11 Score=103.30 Aligned_cols=159 Identities=23% Similarity=0.429 Sum_probs=125.8
Q ss_pred HHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhhcCCCh---hHHHhhcccccccccccccchhHHHHH-Hh
Q 012919 263 VDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRSLGVDV---SVLLQRCPQSLGCSIEANLKPVTEFFL-ER 338 (453)
Q Consensus 263 v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~lG~~~---~~ii~~~P~iL~~s~e~~l~~~~~~L~-~~ 338 (453)
+.-+--+|+.++-++-++.+.|+++...+. .++.+-.||+++|+.. .+++..||.+++..- ..+.+.+..|+ .+
T Consensus 37 isefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllkekc 114 (239)
T 4fzv_B 37 ISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKC 114 (239)
T ss_dssp HHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHHHS
T ss_pred HHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHHhH
Confidence 333444677777777777777777776664 5666677777766653 356667777777763 45666777777 47
Q ss_pred CCChHHHHHHhhhccccccccchhhHhHHHHHHH-HcCCChHHHhhcCccccccccccchhhHHHHHHhCc---------
Q 012919 339 GFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL-TMDYDKSELVKFPQYFGYSLEERIKPRYARVKVHGV--------- 408 (453)
Q Consensus 339 G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~-~~g~~~~~l~~~P~~L~~Sle~rIkpR~~~L~~lg~--------- 408 (453)
=|+.+++.+++..+|.++.-++ ..+.-|++|-. .||....+|++ ..||.||+. +|+.|+-+++.+|.
T Consensus 115 lftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgq 191 (239)
T 4fzv_B 115 LFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQ 191 (239)
T ss_dssp CCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSC
T ss_pred HhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCC
Confidence 8999999999999999999996 89999999987 99999999997 478999996 89999999999985
Q ss_pred ----ccChhhhhccchHhHHHH
Q 012919 409 ----KLLLNQVLSLSGSNFENV 426 (453)
Q Consensus 409 ----~~~L~~~L~~sd~~F~~~ 426 (453)
+..+.++|..|+.+|..+
T Consensus 192 tqipnpllkdilrvseaeflar 213 (239)
T 4fzv_B 192 TQIPNPLLKDILRVSEAEFLAR 213 (239)
T ss_dssp CSSCCCCHHHHHTSCHHHHHHH
T ss_pred ccCCChHHHHHHHHhHHHHHHH
Confidence 345889999999999876
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.89 E-value=1.2e-08 Score=87.44 Aligned_cols=148 Identities=19% Similarity=0.400 Sum_probs=122.7
Q ss_pred hHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHhcccccccchhhHHHHHHHHH
Q 012919 188 IKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLY 267 (453)
Q Consensus 188 l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~ 267 (453)
+-..+.-+.-+|++++-++-++.+.|++|...+ -.++.+-.||+.+|+....+.+++..+|.||++..+++...+..|+
T Consensus 33 lldiisefillglnpepvcvvlkkspqllklpi-mqmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllk 111 (239)
T 4fzv_B 33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK 111 (239)
T ss_dssp TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCH-HHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCceEEEecCCHHHhcChH-HHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHH
Confidence 444556666689999999999999999998887 6888999999999999999999999999999999999999999998
Q ss_pred -HcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh-hcCCChhHHHhhcccccccccccccchhHHHHHHhCC
Q 012919 268 -EMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR-SLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGF 340 (453)
Q Consensus 268 -~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~-~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~ 340 (453)
.+-++..++.+++..||.++.-+.. .++-+++|.- .||+....++.. ..+.+|+ .+++.+.-||.++|.
T Consensus 112 ekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivks--eylqysl-tkikqrhiylerlgr 182 (239)
T 4fzv_B 112 EKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVKS--EYLQYSL-TKIKQRHIYLERLGR 182 (239)
T ss_dssp HHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHHT--TGGGSCH-HHHHHHHHHHHHHTC
T ss_pred HhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhHH--HHHHHHH-HHHHHHHhHHHHhcc
Confidence 5889999999999999999988874 7888877764 688765555432 3456665 567777777777765
No 9
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.20 E-value=0.32 Score=48.43 Aligned_cols=45 Identities=22% Similarity=0.410 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCC
Q 012919 149 SGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 202 (453)
Q Consensus 149 ~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~ 202 (453)
.......|+.|.++||++.++.+.++..- ++.+.-++||.+ |++.
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~~-gip~ 209 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT-GIPG 209 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTTT-SSTT
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh-CCCc
Confidence 34678899999999999999999987752 356678899864 5554
No 10
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=90.89 E-value=5.3 Score=32.90 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHH
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE 232 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~ 232 (453)
+..++.|.+.||+...+.+.+..+- ++.+..++||.... -|.
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~------------------------------~L~ 50 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHG------------------------------QLC 50 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHH------------------------------HHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhc------------------------------hhc
Confidence 3456777778888888877776651 24666777775320 011
Q ss_pred HhCCChhhHHHHHHhcccccccch---hhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 233 NLGVDKTQWAKVIQRFPAVLTYSR---QKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 233 ~lGvs~~~i~~il~~~P~iL~~s~---~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
+-|++..++-..+..+. .+. ......+.-|.++||+.+.+.+.+..+ ..++..-++||.
T Consensus 51 d~~~d~~~~e~~l~~~~----~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~ 112 (118)
T 4ae4_A 51 EKGFDPLLVEEALEMHQ----CSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLM 112 (118)
T ss_dssp HTTCCHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHH
T ss_pred ccCCChhhhHHHHHhcc----CCccccccCHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 22333333333332211 011 012345677778888888887777664 246666777764
No 11
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.53 E-value=3.5 Score=28.92 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHhCCChHHHHHHhhhccccccccchhhHhHHHHHHHHcCCCh
Q 012919 332 TEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFLTMDYDK 378 (453)
Q Consensus 332 ~~~L~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~~~g~~~ 378 (453)
++-|.++||+.+.+...++.-. .+.|++.++||.+|+++.
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHHhcCCC
Confidence 5677889999988877776544 356899999999988863
No 12
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=72.72 E-value=7.9 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHhhh
Q 012919 259 VKQTVDFLYEMGLSAESIGKVLTR 282 (453)
Q Consensus 259 l~~~v~fL~~lG~~~~~i~~il~~ 282 (453)
+..+++||++-|++.++|..++.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 667788888888888888877765
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=72.28 E-value=5.4 Score=28.09 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.6
Q ss_pred cchhHHHHHHhCCChHHHHHHhhh
Q 012919 328 LKPVTEFFLERGFTVEEIGTMISR 351 (453)
Q Consensus 328 l~~~~~~L~~~G~s~eev~~mi~~ 351 (453)
+..+++||++.|++.+||...+.+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 456899999999999999888765
No 14
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.33 E-value=12 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 152 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 152 l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
....++-|.++||++.++...+... ..+++.-++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS--------YNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT--------TSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 4567889999999999999988765 2357778888876
No 15
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=68.27 E-value=13 Score=25.90 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=32.5
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCC
Q 012919 150 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIP 201 (453)
Q Consensus 150 ~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~ 201 (453)
..+...++-|.++|+++.++.+.+... .++++--..+|.++.++
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~nnve~AaniLlef~~~ 52 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIA--------QNNVEVARSILREFAFP 52 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHCCC
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHhcCC
Confidence 355678999999999999999988765 34666666777776653
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=66.82 E-value=44 Score=27.31 Aligned_cols=92 Identities=21% Similarity=0.303 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh------cCCChh---HHHhhccccccccccc--ccc
Q 012919 261 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS------LGVDVS---VLLQRCPQSLGCSIEA--NLK 329 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~------lG~~~~---~ii~~~P~iL~~s~e~--~l~ 329 (453)
..+.-|.++||+...+.+.+..+- ++.+..++||.. .|++.. .-+..+ ..+..+ .-.
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g--------~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~----~~~~~~~~~~~ 77 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAG--------ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMH----QCSEEKMMEFL 77 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHC----SSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHC--------cCHHHHHHHHHHhchhcccCCChhhhHHHHHhc----cCCccccccCH
Confidence 345566677777777776666542 134445555532 344421 111111 011000 011
Q ss_pred hhHHHHHHhCCChHHHHHHhhhccccccccchhhHhHHHHHHH
Q 012919 330 PVTEFFLERGFTVEEIGTMISRFGALYTFSLTENLIPKWEFFL 372 (453)
Q Consensus 330 ~~~~~L~~~G~s~eev~~mi~~~P~lL~~sl~~~L~~k~~fL~ 372 (453)
..+.-|.++||+.+++...+..+. ..+..-+++|.
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~ 112 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLM 112 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 246677889999998887776543 45555667776
No 17
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.28 E-value=13 Score=25.99 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=37.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCC
Q 012919 150 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 202 (453)
Q Consensus 150 ~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~ 202 (453)
...+..++-|.+.||+.+.+...+...- ...+++.++||...+++.
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHSCSC
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHHhcCCC
Confidence 5667789999999999999888877642 246999999999888764
No 18
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=59.57 E-value=11 Score=27.97 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.3
Q ss_pred cchhHHHHHHhCCChHHHHHHhhhcc
Q 012919 328 LKPVTEFFLERGFTVEEIGTMISRFG 353 (453)
Q Consensus 328 l~~~~~~L~~~G~s~eev~~mi~~~P 353 (453)
+..++.||++.|++.+||...+.+..
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSG 60 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcc
Confidence 45689999999999999999888753
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.99 E-value=23 Score=24.51 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=31.4
Q ss_pred CChHHHHHHHHhcCC-CHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCC
Q 012919 150 GDLRPQILYLIELGM-DLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGI 200 (453)
Q Consensus 150 ~~l~~~l~~L~~lGl-s~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~ 200 (453)
......++-|.++|| +.......+... ..+++.-++||.+.+.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHHcCC
Confidence 345667889999999 777777776654 2468888899887553
No 20
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=57.19 E-value=13 Score=27.53 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHhhhC
Q 012919 259 VKQTVDFLYEMGLSAESIGKVLTRC 283 (453)
Q Consensus 259 l~~~v~fL~~lG~~~~~i~~il~~~ 283 (453)
+..++.||++-|++.++|..++.+.
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 6677888888888888888777763
No 21
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.34 E-value=37 Score=23.66 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCC
Q 012919 150 GDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGI 200 (453)
Q Consensus 150 ~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~ 200 (453)
......++-|.++|+++.++.+.+... +++++---++|+++..
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a--------~nnve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIA--------HNNIEMAKNILREFSG 49 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHh--------cCCHHHHHHHHHHhcc
Confidence 455677999999999999999988765 2467666677776544
No 22
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=49.22 E-value=46 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 148 SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
........|+-|.++||+.+++...+..+ ..+++.-++||.+
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMS 66 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 34556788999999999999999988775 2468888999986
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=49.19 E-value=30 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
...++-|.++||+..+..+.+..+ ..+++.-++||.+
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC--------NWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH--------TSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CcCHHHHHHHHHc
Confidence 356788999999999988887664 2357777788753
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=47.74 E-value=39 Score=23.20 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=29.9
Q ss_pred CCCChHHHHHHHHhcCC-CHHHHHHHHHhCCCccccCcCCChHHHHHHHH
Q 012919 148 SSGDLRPQILYLIELGM-DLEKIKLITRRFPAFSYYSLEGKIKPVVEFLL 196 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGl-s~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~ 196 (453)
++......++-|.++|| +.....+.+... ..+++.-++||.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gn~e~A~e~L~ 49 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIAT--------GGDINAAIERLL 49 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 45566788999999999 777777776554 235777778774
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=47.10 E-value=34 Score=23.60 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCC-ChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 258 KVKQTVDFLYEMGL-SAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 258 ~l~~~v~fL~~lG~-~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
.....++-|.++|| +++...+.+..+ ..+++..++||.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t--------~gnve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIAT--------GGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 46666777777777 666655555542 1245556666543
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.10 E-value=45 Score=23.95 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
...|+-|.++||+..++.+.+..+ ..+++.-++||.+-.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHCC
Confidence 567889999999999998887765 246788889987643
No 27
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.66 E-value=28 Score=25.05 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
...|+-|.++||+..+..+.++.. ++++++.++||-+.
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLFSH 57 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHhC
Confidence 345788999999999999998876 35799999998753
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.30 E-value=35 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 259 VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 259 l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
....+.-|.++||+++++.+.+..+- .+++..++||.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 45567777788888888877777542 245555666543
No 29
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=41.92 E-value=63 Score=20.28 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHH
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFL 195 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL 195 (453)
...++-|.++|++..+....+..+ ..+++.-+++|
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~--------~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA--------NGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHH
Confidence 456788888999998888876654 23466666654
No 30
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=41.75 E-value=1.3e+02 Score=32.42 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=11.1
Q ss_pred HcCCChHHHHHHhhcCh
Q 012919 39 KQGLSKGVAARTINKSD 55 (453)
Q Consensus 39 ~~g~~~~~a~~i~~~s~ 55 (453)
++|++..+...|+.|--
T Consensus 320 ~~gltp~qvVaIAsn~G 336 (1047)
T 3ugm_A 320 AHGLTPDQVVAIASHDG 336 (1047)
T ss_dssp HTCCCHHHHHHHHSSSS
T ss_pred hcCCCHHHheeecccCc
Confidence 56677666666666643
No 31
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=39.92 E-value=58 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCCChHHHHHHhhh
Q 012919 258 KVKQTVDFLYEMGLSAESIGKVLTR 282 (453)
Q Consensus 258 ~l~~~v~fL~~lG~~~~~i~~il~~ 282 (453)
.+...|.-|-++|++.+++.+.+..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445666777777777777666653
No 32
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.88 E-value=53 Score=22.81 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=31.0
Q ss_pred CCCChHHHHHHHHhcCCCHHH-HHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 148 SSGDLRPQILYLIELGMDLEK-IKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGls~~~-i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
++....+.++-|.++||++.+ ..+++... ..+++.-+++|.+.+
T Consensus 5 p~~~~~~~l~~L~~MGF~d~~~n~~AL~~~--------~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 5 SSGHFQVQLEQLRSMGFLNREANLQALIAT--------GGDVDAAVEKLRQSS 49 (54)
T ss_dssp CCCSSHHHHHHHHHHTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHcCCCcHHHHHHHHHHc--------CCCHHHHHHHHHhCC
Confidence 445667889999999997765 46665543 246788888887644
No 33
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.72 E-value=53 Score=25.10 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 152 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 152 l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
-...++-|.++||++.++.+.++.. ..+++.-++||.+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 4678899999999999999998876 2458888999975
No 34
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.41 E-value=72 Score=24.40 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPK 202 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~ 202 (453)
.+.++-|.++||+..++.+.+... ..+++.-++||.+.....
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h~~D~ 63 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEKKVDV 63 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHCcCCc
Confidence 677889999999999999988543 246888999998765543
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=53 Score=23.40 Aligned_cols=39 Identities=8% Similarity=0.227 Sum_probs=30.1
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
.-...++-|.++||++.+..+.+...- .+++.-++||.+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSMGFSRDQALKALRATN--------NSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTT--------SCSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 346678899999999999999887752 357778888864
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.10 E-value=61 Score=23.97 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=31.7
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
.-...++-|.++||+..++.+.++.. .++++.-++||.+-
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t--------~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHhC
Confidence 34667899999999999999988775 24688888998763
No 37
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.81 E-value=39 Score=25.16 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 259 VKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 259 l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
....|+-|.++||+++++.+.+..+ ..+++..++||.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~--------~~nve~Ave~Ll 65 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILM 65 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 4556666777777777776666643 124555666654
No 38
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=36.13 E-value=26 Score=26.03 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=8.5
Q ss_pred HHHHHhcCCCHHHHHH
Q 012919 156 ILYLIELGMDLEKIKL 171 (453)
Q Consensus 156 l~~L~~lGls~~~i~~ 171 (453)
++|+.++|++.....+
T Consensus 6 f~FFl~aGv~~~~c~r 21 (72)
T 3idw_A 6 FEFFLNCGVDVSNCQR 21 (72)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCChHHHHH
Confidence 4555666665544433
No 39
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.10 E-value=53 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 261 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
..|+-|.++||+++...+.+..+ ..+++..++||.+
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~--------~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 45667777888877777776654 1246666677653
No 40
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.80 E-value=64 Score=23.11 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHhCCChhhHHHHHHhcccccccchhhHHHHHHHHHHcCCChHHHHH
Q 012919 232 ENLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGK 278 (453)
Q Consensus 232 ~~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~ 278 (453)
+..|++..-|.+++...+.-+..+.+..+...+..+++|+.+....+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC----
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHH
Confidence 34577777777766655521223444455555555666666555443
No 41
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.30 E-value=97 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHhcCCC-HHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 148 SSGDLRPQILYLIELGMD-LEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGls-~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
++......++-|.++||+ +..+.+.+... ..+++.-++||.+
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t--------~Gnve~Ave~L~~ 67 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQALVAT--------DGDIHAAIEMLLG 67 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHHHT--------TSCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHh
Confidence 456778899999999995 66667776654 2568888999985
No 42
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=31.97 E-value=2.3e+02 Score=23.92 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCChHHHHHHhhh
Q 012919 261 QTVDFLYEMGLSAESIGKVLTR 282 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~ 282 (453)
..+.||..-||+.+.|..++..
T Consensus 137 K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 137 KAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHhc
Confidence 3455666666666666655543
No 43
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=31.44 E-value=45 Score=28.61 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRF 176 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~ 176 (453)
...+.||..-||+.+.|..++...
T Consensus 136 ~K~~~~L~rrGF~~~~I~~~l~~~ 159 (162)
T 3dfg_A 136 RKAADLLARRGFDGNSIRLATRFD 159 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHHCCCCHHHHHHHHhcC
Confidence 456789999999999999876543
No 44
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=30.18 E-value=21 Score=35.30 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=29.2
Q ss_pred ChHHHHHHHHhCCCCCCCHHHHHhhCCCcccCCcccchHHHHHHHH
Q 012919 187 KIKPVVEFLLDLGIPKAQIPTILGKRPQLCGISLSENLIPTMTFLE 232 (453)
Q Consensus 187 ~l~~~v~fL~~lG~~~~~I~~ii~~~P~lL~~s~e~~l~~~l~fL~ 232 (453)
.....|+-|.++||+++++.+.+...- .+...-++||-
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~ 204 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL 204 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 467889999999999999999988643 24455677774
No 45
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.68 E-value=2.7e+02 Score=23.93 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHhC-CChhhHHHHHHhccccc-ccchhhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHH
Q 012919 222 ENLIPTMTFLENLG-VDKTQWAKVIQRFPAVL-TYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTA 299 (453)
Q Consensus 222 ~~l~~~l~fL~~lG-vs~~~i~~il~~~P~iL-~~s~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v 299 (453)
+.+...++.|.+.| +++...+....+.-.-. ..++..|. .-|+.-|++.+.|..++...+ .++-.....
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~---~eL~~KGI~~~~I~~al~~~~------~~de~e~a~ 120 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIK---LNLSKKGIDDNIAEDALILYT------DKLQVEKGV 120 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHH---HHHHTTTCCHHHHHHHHTTSC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHH---HHHHHcCCCHHHHHHHHHhCC------chhHHHHHH
Confidence 45566666776665 44555554444321111 12332333 356677888888877775432 111122111
Q ss_pred HHHhhcCCChhHHHhhcccccccccccccchhHHHHHHhCCChHHHHHHhhh
Q 012919 300 EYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISR 351 (453)
Q Consensus 300 ~~L~~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~s~eev~~mi~~ 351 (453)
..+.+ +++..-..+....-+..+.||...||+.+.+...+..
T Consensus 121 ~l~~K----------k~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 121 TLAEK----------LANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHH----------HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHH----------HHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 11111 0111001111111223356888889999888777654
No 46
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=29.54 E-value=41 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHhcccccccchhhHHHHHHHHHHcCCChHHHHHHhhhCCc
Q 012919 245 IQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPN 285 (453)
Q Consensus 245 l~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~il~~~P~ 285 (453)
+.+.|.....+.+.+...++.|+.+|+++.++..++.-+|.
T Consensus 63 L~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~ 103 (136)
T 3ayh_A 63 LSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPS 103 (136)
T ss_dssp HHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCC
T ss_pred HHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCC
Confidence 33344433345667777788888888888888888888884
No 47
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.38 E-value=3.1e+02 Score=24.48 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHhC-CChhhHHHHHHhcccc-cccchhhHHHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHH
Q 012919 222 ENLIPTMTFLENLG-VDKTQWAKVIQRFPAV-LTYSRQKVKQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTA 299 (453)
Q Consensus 222 ~~l~~~l~fL~~lG-vs~~~i~~il~~~P~i-L~~s~~~l~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v 299 (453)
+.+...++.|.+.| +++...+....+.-.- =..++..| ..-|+.-|++.+.|..++...+ .++-.....
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I---~~eL~~KGI~~~~I~~al~~~~------~~~e~e~a~ 163 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGII---RQHLRQKGIGESDIDDALTQFT------PEVQAELAK 163 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHH---HHHHHHTTCCHHHHHHHGGGCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHH---HHHHHHcCCCHHHHHHHHHhCC------HHHHHHHHH
Confidence 45666667777665 4455555444432110 01222223 3466778888888887776542 111111111
Q ss_pred HHHhhcCCChhHHHhhcccccccccccccchhHHHHHHhCCChHHHHHHhhhc
Q 012919 300 EYFRSLGVDVSVLLQRCPQSLGCSIEANLKPVTEFFLERGFTVEEIGTMISRF 352 (453)
Q Consensus 300 ~~L~~lG~~~~~ii~~~P~iL~~s~e~~l~~~~~~L~~~G~s~eev~~mi~~~ 352 (453)
..+.+ +++..-..+....-+..+.||...||+.+.+..++...
T Consensus 164 ~l~~K----------k~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 164 KLALK----------LFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHH----------HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHH----------HHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 11111 11110011111223344778888999999988777543
No 48
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.08 E-value=50 Score=23.76 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 261 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
..|+-|-++||+.++..+.++.+ ..+++..++||-
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat--------~~NvErAaDWLF 55 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLF 55 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 34777778888888888888764 246777777764
No 49
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=29.03 E-value=1.5e+02 Score=20.73 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=32.1
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCC
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIP 201 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~ 201 (453)
.++..++-|.+.|+++.++.+.+... .+++.---++|.++..-
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ia--------~Ndv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIA--------QNNIEMAKNILREFVSI 48 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT--------TTCSHHHHHHHHHSCCC
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHh--------cccHHHHHHHHHHHHcc
Confidence 35667889999999999999987654 24566666788887653
No 50
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.77 E-value=1.1e+02 Score=20.22 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
.-...++-|.++||+..+..+.+... . +++.-++||.+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~~--------~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 8 VNQQQLQQLMDMGFTREHAMEALLNT--------S-TMEQATEYLLT 45 (47)
T ss_dssp SCHHHHHHHHHHHCCHHHHHHHHHHS--------C-SHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHc--------C-CHHHHHHHHHc
Confidence 44667889999999999999887764 1 46777788754
No 51
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.74 E-value=84 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 261 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
..++-|.++||+++...+.+..+- .+++..++||.
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~ 65 (73)
T 1wiv_A 31 SSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 345566667777777666666531 24555566654
No 52
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.36 E-value=1.2e+02 Score=21.60 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 154 PQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 154 ~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
..++-|.++||+..++.+.+...- ..+++.-++||.+.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~-------~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTG-------GRSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTT-------TSCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCCHHHHHHHHHhC
Confidence 467889999999999999887652 12688888999764
No 53
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=28.00 E-value=1.3e+02 Score=20.25 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.5
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
.+...++-|.+.|++..++.+.+... .++++---+.|.++
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia--------~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA--------QNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT--------TTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh--------hccHHHHHHHHHHh
Confidence 35677889999999999999877554 23565555566554
No 54
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.11 E-value=86 Score=23.91 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 260 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 260 ~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
...|.-|.++||+++.+.+++..+ ..+++..++||-+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t--------~gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVF--------GGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 445666667777777776666643 1245666666653
No 55
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=26.63 E-value=2.5e+02 Score=22.61 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 154 PQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 154 ~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
..++-|.++||+.....+.+.... + .+++.-++||.+.
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~-----n--~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTG-----N--MGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHT-----S--CCHHHHHHHHHHG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-----C--CCHHHHHHHHHHh
Confidence 457789999999999999887652 1 2578888999753
No 56
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=26.22 E-value=39 Score=30.38 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHhhc
Q 012919 27 EEAKAVLTLFLKKQGLSKGVAARTINK 53 (453)
Q Consensus 27 ~~a~~~~~~~l~~~g~~~~~a~~i~~~ 53 (453)
+.=|.++..||.+||+..+-|+.|..-
T Consensus 160 e~Lq~~l~~yLeeRGI~~~la~fl~~y 186 (209)
T 1p32_A 160 WALYDHLMDFLADRGVDNTFADELVEL 186 (209)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355899999999999999999887653
No 57
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.78 E-value=1.4e+02 Score=22.68 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=31.9
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
.-...++-|.++||+..+..+.+... .++++.-++||.+.
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t--------~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLN--------HMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 45677899999999999999988765 24678888999763
No 58
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=23.72 E-value=48 Score=29.15 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHhhc
Q 012919 27 EEAKAVLTLFLKKQGLSKGVAARTINK 53 (453)
Q Consensus 27 ~~a~~~~~~~l~~~g~~~~~a~~i~~~ 53 (453)
+.=|.++..||.+||+..+-|+.|..-
T Consensus 135 e~Lq~~l~~yLeeRGI~~~la~fl~~y 161 (182)
T 3jv1_A 135 DHLVDSFTSYLSARGVNDTLANFIDQF 161 (182)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455889999999999999999877643
No 59
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=23.36 E-value=54 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHhh
Q 012919 27 EEAKAVLTLFLKKQGLSKGVAARTIN 52 (453)
Q Consensus 27 ~~a~~~~~~~l~~~g~~~~~a~~i~~ 52 (453)
+.=|.++..||.+||+..+-|+.|..
T Consensus 156 e~Lq~~l~~YLeeRGI~~~la~fl~~ 181 (203)
T 1yqf_A 156 YDLLNCVMTYLEKRGVDEKLGEFVVL 181 (203)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45588999999999999999987754
No 60
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.87 E-value=2.2e+02 Score=23.90 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhCCCCCC-CHHHHHhhCCCcccCCcccchHHHHHHHHHhCCChhhHHHHHHh
Q 012919 187 KIKPVVEFLLDLGIPKA-QIPTILGKRPQLCGISLSENLIPTMTFLENLGVDKTQWAKVIQR 247 (453)
Q Consensus 187 ~l~~~v~fL~~lG~~~~-~I~~ii~~~P~lL~~s~e~~l~~~l~fL~~lGvs~~~i~~il~~ 247 (453)
.++.+++.|.+.|+=.+ ..+....+.-.--+.+. .....-|+.-||+.+.|...+..
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~----~~I~~eL~~KGI~~~~i~~al~~ 105 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGP----ARIRQELNQKGISREATEKAMRE 105 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCH----HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccH----HHHHHHHHHcCCCHHHHHHHHHH
Confidence 46667777777666433 23333222110001121 12233455667766666665554
No 61
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.31 E-value=1.2e+02 Score=22.33 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 152 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 152 l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
-...++-|.++||+..+..+.+...- ..+++.-++||.+.
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~-------n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTG-------NSGAEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHT-------SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC-------CCCHHHHHHHHHhC
Confidence 45678899999999999999887652 12588889999763
No 62
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=22.28 E-value=1.8e+02 Score=23.27 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHhcCCCH-HHHHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 148 SSGDLRPQILYLIELGMDL-EKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGls~-~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
++....+.++-|.++||++ ....+++... ..+++.-+++|.+.|
T Consensus 62 ~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t--------~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 62 EGSQWQPQLQQLRDMGIQDDELSLRALQAT--------GGDIQAALELIFAGG 106 (108)
T ss_dssp -CCTTHHHHHHHHTTTCCCHHHHHHHHHHH--------TSCHHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHcCCCCHHHHHHHHHHh--------CCCHHHHHHHHHhcC
Confidence 4456688999999999965 5666666553 256888899998755
No 63
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=22.26 E-value=1.6e+02 Score=19.55 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=25.7
Q ss_pred ChHHHHHHHHhcCCCH-HHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 151 DLRPQILYLIELGMDL-EKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~-~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
...+.++-|.++||++ ....+.+... ..++..-+++|.+
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~--------~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRS--------GGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHh--------CCCHHHHHHHHHc
Confidence 3467788899999864 4456665543 2467777777753
No 64
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.42 E-value=2.1e+02 Score=19.92 Aligned_cols=45 Identities=29% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCCChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 148 SSGDLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 148 ~~~~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
++..-.+.++-|.+.||.+.+...-+.+. . ..++...|+.|...|
T Consensus 5 ~ee~~a~~L~~L~eMGF~D~~~N~~aL~~------~-~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 5 SSGQTAALMAHLFEMGFCDRQLNLRLLKK------H-NYNILQVVTELLQLS 49 (54)
T ss_dssp SCTTHHHHHHHHHHHTCCCHHHHHHHHTT------T-TTCHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHcCCCcHHHHHHHHHH------c-CCCHHHHHHHHHhcc
Confidence 55666778889999999666655543332 1 346777777776544
Done!