Query 012919
Match_columns 453
No_of_seqs 248 out of 1362
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 18:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012919.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012919hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 66.2 2.6 0.00019 26.3 3.3 37 151-195 3-39 (41)
2 d1wgna_ a.5.2.1 (A:) Ubiquitin 45.8 11 0.00084 25.5 4.1 39 153-199 20-58 (63)
3 d1oqya1 a.5.2.1 (A:160-200) DN 45.5 8.3 0.0006 23.8 3.0 26 258-283 3-28 (41)
4 d1vg5a_ a.5.2.1 (A:) Rhomboid 44.1 22 0.0016 24.7 5.5 40 152-199 29-68 (73)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 44.0 20 0.0014 25.0 5.2 38 153-198 30-67 (73)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 43.0 24 0.0017 23.7 5.4 38 153-198 10-47 (63)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 39.9 26 0.0019 23.0 5.1 45 233-280 9-53 (57)
8 d1vg5a_ a.5.2.1 (A:) Rhomboid 38.8 15 0.0011 25.6 3.9 36 260-303 30-65 (73)
9 d1wgna_ a.5.2.1 (A:) Ubiquitin 36.5 14 0.001 25.0 3.3 37 260-304 20-56 (63)
10 d1wiva_ a.5.2.1 (A:) Ubiquitin 34.8 25 0.0018 24.4 4.5 36 260-303 30-65 (73)
11 d2o4aa1 a.35.1.7 (A:370-452) D 31.5 13 0.00096 26.7 2.5 40 32-72 9-49 (83)
12 d1k6ya1 a.4.10.1 (A:1-46) N-te 31.0 14 0.00099 23.5 2.2 31 26-56 5-42 (46)
13 d2hsga1 a.35.1.5 (A:2-58) Gluc 30.9 38 0.0028 22.1 4.8 42 234-278 11-52 (57)
14 d1efaa1 a.35.1.5 (A:2-60) Lac 29.5 37 0.0027 22.4 4.5 44 234-280 12-55 (59)
15 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 27.9 47 0.0034 21.2 4.6 37 154-197 14-50 (51)
16 d2g3qa1 a.5.2.1 (A:1339-1381) 27.8 19 0.0014 22.3 2.4 22 332-353 8-29 (43)
17 d1e0ea_ a.4.10.1 (A:) N-termin 27.5 24 0.0017 22.3 3.0 23 35-57 20-43 (46)
18 d1wjia_ a.5.2.1 (A:) Tudor dom 27.5 42 0.0031 22.3 4.6 36 261-304 11-46 (63)
19 d1qpza1 a.35.1.5 (A:2-58) Puri 26.9 31 0.0022 22.6 3.7 47 161-211 9-55 (57)
20 d1yqfa1 d.25.1.1 (A:14-195) Hy 23.7 20 0.0015 29.4 2.7 28 27-54 135-162 (182)
21 d2csfa1 a.35.1.7 (A:8-95) DNA- 21.7 26 0.0019 25.3 2.6 41 31-72 17-58 (88)
22 d1y14a_ a.60.8.2 (A:) RNA poly 21.4 62 0.0045 26.3 5.3 40 26-65 111-150 (176)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.18 E-value=2.6 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=26.5
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHH
Q 012919 151 DLRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFL 195 (453)
Q Consensus 151 ~l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL 195 (453)
+.++.++-|.+.||++.+..+.+...- .+++.-++||
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~~--------~N~e~A~~~L 39 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYL 39 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHH
Confidence 456778888888888888888877751 3455566665
No 2
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.85 E-value=11 Score=25.47 Aligned_cols=39 Identities=13% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
...|+.|.++||++.+..+.+..+ + ++++.-++||.+..
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~------~--~n~e~A~~~Lls~~ 58 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK------G--ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH------C--SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc------C--CCHHHHHHHHHhCC
Confidence 567899999999999999988775 2 46888999997643
No 3
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.49 E-value=8.3 Score=23.84 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHhhhC
Q 012919 258 KVKQTVDFLYEMGLSAESIGKVLTRC 283 (453)
Q Consensus 258 ~l~~~v~fL~~lG~~~~~i~~il~~~ 283 (453)
..++.|.-|.++||++++..+.+..+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 45677888888888888888888764
No 4
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=44.08 E-value=22 Score=24.72 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=32.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCC
Q 012919 152 LRPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLG 199 (453)
Q Consensus 152 l~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG 199 (453)
-+..|+-|.++||++++..+.+..+ .++++.-++||.+..
T Consensus 29 ~ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll~~~ 68 (73)
T d1vg5a_ 29 SEEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILMSQS 68 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHHhCC
Confidence 3677899999999999999988775 257889999997643
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.96 E-value=20 Score=24.96 Aligned_cols=38 Identities=11% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
...++-|.++||++.+..+.+... .++++.-++||.+-
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHHcC
Confidence 567889999999999999988776 24688899999764
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.00 E-value=24 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhC
Q 012919 153 RPQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDL 198 (453)
Q Consensus 153 ~~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~l 198 (453)
...++-|.++||+..+..+.+... .++++.-++||.+-
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHHC
Confidence 567889999999999999988765 24688889999763
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.93 E-value=26 Score=23.03 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=25.7
Q ss_pred HhCCChhhHHHHHHhcccccccchhhHHHHHHHHHHcCCChHHHHHHh
Q 012919 233 NLGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVL 280 (453)
Q Consensus 233 ~lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~il 280 (453)
..|++..-+.+++...|. .+.+.-+...+..+++|+.+...++-+
T Consensus 9 ~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 356666666666665553 244445555555566666665555444
No 8
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.82 E-value=15 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 260 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 260 ~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
++.|+-|.++||+++...+.+..| ..+++.-++||-
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Ll 65 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAA--------DDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH--------TSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--------CCCHHHHHHHHH
Confidence 445666777777777766666553 235666666664
No 9
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.48 E-value=14 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 260 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 260 ~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
+..|.-|.++||+++...+.+..| ..+++.-++||-+
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~--------~~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKK--------GENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHh
Confidence 456777788888888877777654 2356667777653
No 10
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.76 E-value=25 Score=24.36 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHh
Q 012919 260 KQTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFR 303 (453)
Q Consensus 260 ~~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~ 303 (453)
...|.-|.++||+++...+.+..+ ..+++..++||-
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~--------~~n~e~Av~~Ll 65 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKAS--------GGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHc--------CCCHHHHHHHHH
Confidence 345666677777777777777654 135666666664
No 11
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.46 E-value=13 Score=26.67 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCChH-HHHHHhhcChHHHHHHHhhhHhhhhhh
Q 012919 32 VLTLFLKKQGLSKG-VAARTINKSDLFIDHLVSRLHSVHKSR 72 (453)
Q Consensus 32 ~~~~~l~~~g~~~~-~a~~i~~~s~~~~~~l~~~~~~~~~~~ 72 (453)
-|.+.|++.++|-+ =|.++..+|+..++.|+.+.+. |+.+
T Consensus 9 ~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~pkp-w~~l 49 (83)
T d2o4aa1 9 WVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEED-PKTA 49 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCC-TTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHccCcHHHHHHHcCCCC-chhh
Confidence 36789999999954 5889999999999999998744 4443
No 12
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=30.99 E-value=14 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHH------HHHH-HcCCChHHHHHHhhcChH
Q 012919 26 KEEAKAVLT------LFLK-KQGLSKGVAARTINKSDL 56 (453)
Q Consensus 26 ~~~a~~~~~------~~l~-~~g~~~~~a~~i~~~s~~ 56 (453)
+++||..=. .+|. +.|||..+|-.|.+.||.
T Consensus 5 Ie~Aqe~H~k~H~n~~~L~~~F~ip~~vAr~IV~~C~~ 42 (46)
T d1k6ya1 5 IDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDK 42 (46)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTCCHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHhcCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455665543 3477 999999999999999984
No 13
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=30.91 E-value=38 Score=22.13 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=19.4
Q ss_pred hCCChhhHHHHHHhcccccccchhhHHHHHHHHHHcCCChHHHHH
Q 012919 234 LGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGK 278 (453)
Q Consensus 234 lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~ 278 (453)
.|+|..-+.++|...|. .+.+.-+...+..+++|+.+...++
T Consensus 11 agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn~~A~ 52 (57)
T d2hsga1 11 ASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPNAVAR 52 (57)
T ss_dssp TTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSCHHHH
T ss_pred HCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCCHHHH
Confidence 45555555555554442 2333344444444455554444433
No 14
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.46 E-value=37 Score=22.42 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=23.7
Q ss_pred hCCChhhHHHHHHhcccccccchhhHHHHHHHHHHcCCChHHHHHHh
Q 012919 234 LGVDKTQWAKVIQRFPAVLTYSRQKVKQTVDFLYEMGLSAESIGKVL 280 (453)
Q Consensus 234 lGvs~~~i~~il~~~P~iL~~s~~~l~~~v~fL~~lG~~~~~i~~il 280 (453)
.|++..-+.++|...|.+ +.+.-+...+..+++|+.+..+++.+
T Consensus 12 agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn~~Ar~L 55 (59)
T d1efaa1 12 AGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPNRVAQQL 55 (59)
T ss_dssp TTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 466666666666554432 44445555555556666655555444
No 15
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.86 E-value=47 Score=21.20 Aligned_cols=37 Identities=8% Similarity=0.231 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHh
Q 012919 154 PQILYLIELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLD 197 (453)
Q Consensus 154 ~~l~~L~~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~ 197 (453)
..++.|.+.||+..+..+.+... . ..+++.-++||.+
T Consensus 14 ~~l~~L~~MGF~~~~a~~AL~~t------~-n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 14 SALDVLLSMGFPRARAQKALAST------G-GRSVQTACDWLFS 50 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHT------T-TSCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH------C-CCCHHHHHHHHHc
Confidence 34788999999999999987653 1 2368888888864
No 16
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=27.78 E-value=19 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHhCCChHHHHHHhhhcc
Q 012919 332 TEFFLERGFTVEEIGTMISRFG 353 (453)
Q Consensus 332 ~~~L~~~G~s~eev~~mi~~~P 353 (453)
++-|.++||+.++..+.+.++-
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~ 29 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHcC
Confidence 5667789999999988887765
No 17
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=27.54 E-value=24 Score=22.27 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHH-HcCCChHHHHHHhhcChHH
Q 012919 35 LFLK-KQGLSKGVAARTINKSDLF 57 (453)
Q Consensus 35 ~~l~-~~g~~~~~a~~i~~~s~~~ 57 (453)
..|. +.|||..+|-.|.+.||.-
T Consensus 20 ~~L~~~F~lp~~vAr~IV~~C~~C 43 (46)
T d1e0ea_ 20 KELSHKFGIPNLVARQIVNSCAQC 43 (46)
T ss_dssp HHHHHHTCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3476 8999999999999999863
No 18
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.52 E-value=42 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCChHHHHHHhhhCCceeEechhhcHHHHHHHHhh
Q 012919 261 QTVDFLYEMGLSAESIGKVLTRCPNIISYSIEEKLRPTAEYFRS 304 (453)
Q Consensus 261 ~~v~fL~~lG~~~~~i~~il~~~P~iL~~s~e~~l~~~v~~L~~ 304 (453)
..|+-|.++||++....+.+..+ ..+++..++||.+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~--------~~~~e~A~~wL~~ 46 (63)
T d1wjia_ 11 KALKHITEMGFSKEASRQALMDN--------GNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT--------TSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh--------CCCHHHHHHHHHH
Confidence 44566777777777777776654 1356666777653
No 19
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.90 E-value=31 Score=22.65 Aligned_cols=47 Identities=6% Similarity=0.040 Sum_probs=33.7
Q ss_pred hcCCCHHHHHHHHHhCCCccccCcCCChHHHHHHHHhCCCCCCCHHHHHhh
Q 012919 161 ELGMDLEKIKLITRRFPAFSYYSLEGKIKPVVEFLLDLGIPKAQIPTILGK 211 (453)
Q Consensus 161 ~lGls~~~i~~iv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~I~~ii~~ 211 (453)
..|+|...+.+++...|.+ +. +.-+.+.+..+++|..+..+++-+..
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s~-~tr~rV~~~a~~lgY~pn~~Ar~Lr~ 55 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---AE-ETRNAVWAAIKELHYSPSAVARSLKV 55 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---CH-HHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---CH-HHHHHHHHHHHHHCCCCCHHHHHHhh
Confidence 4789999999988877653 32 23455566778899988888776654
No 20
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=23.72 E-value=20 Score=29.39 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHhhcC
Q 012919 27 EEAKAVLTLFLKKQGLSKGVAARTINKS 54 (453)
Q Consensus 27 ~~a~~~~~~~l~~~g~~~~~a~~i~~~s 54 (453)
+.=|.++..||.+||+...-|+.|..-|
T Consensus 135 e~Lq~~l~~yLeeRGId~~la~fl~~~~ 162 (182)
T d1yqfa1 135 YDLLNCVMTYLEKRGVDEKLGEFVVLYS 162 (182)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4558899999999999999998876544
No 21
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.74 E-value=26 Score=25.28 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCChH-HHHHHhhcChHHHHHHHhhhHhhhhhh
Q 012919 31 AVLTLFLKKQGLSKG-VAARTINKSDLFIDHLVSRLHSVHKSR 72 (453)
Q Consensus 31 ~~~~~~l~~~g~~~~-~a~~i~~~s~~~~~~l~~~~~~~~~~~ 72 (453)
.-|.+.|++.++|-+ =|.++..+|+..++.|+.+-++ |+.|
T Consensus 17 ~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp-~~~~ 58 (88)
T d2csfa1 17 DEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKEN-PSPE 58 (88)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCC-CCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHccCcHHHHHHHcCCCC-cchh
Confidence 347889999999954 5889999999999999998755 4443
No 22
>d1y14a_ a.60.8.2 (A:) RNA polymerase II subunit RBP4 (RpoF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.38 E-value=62 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.078 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHhhcChHHHHHHHhhh
Q 012919 26 KEEAKAVLTLFLKKQGLSKGVAARTINKSDLFIDHLVSRL 65 (453)
Q Consensus 26 ~~~a~~~~~~~l~~~g~~~~~a~~i~~~s~~~~~~l~~~~ 65 (453)
-+++-+++.+.|...|+..-+++.|++-||.-++..-+-+
T Consensus 111 ~~es~~~vrelL~~~~L~~fE~a~L~NLcPet~eEAkaLi 150 (176)
T d1y14a_ 111 DQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLI 150 (176)
T ss_dssp SHHHHHHHHHHHHTTTCCHHHHHHHHHSCCSSHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHhhccCCCCHHHHHHHh
Confidence 4677788999999999999999999999999887665544
Done!