Your job contains 1 sequence.
>012923
MAKKRKHDSKTSEPTEPPQKQLQQEPPKQEEPIEEEEYEEEVEEEGEEEGEEEEEEEEEE
EEEEEKADQKEDEEEEEKADQNDEEDDEPILSLLEPFSKDQLVNLLREAAENHRDVASRV
RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK
TRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHH
QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD
AAKKALEEPHKNFEGHILNCQRAIDGPKPGKSRHHNAQNPHFQRNEGAGYVGGAGPAAAG
PGHLMAPSGPAIPPAAAQALNPALGQALLGTLGSAAGGTAPMQGTYGNQTNVSPSVIGGY
ANQGGYPNQQMPQGGAGRGQHAAGQYGAPYMGH
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012923
(453 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 916 6.9e-96 2
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 528 2.1e-95 3
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 282 8.7e-49 2
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 355 1.8e-32 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 320 4.9e-28 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 306 2.8e-27 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 158 4.4e-23 2
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 156 8.6e-22 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 158 8.9e-20 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 163 1.8e-19 3
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 167 2.0e-19 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 160 4.8e-19 2
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 164 5.0e-19 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 167 5.1e-19 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 167 5.1e-19 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 167 5.1e-19 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 156 6.7e-19 3
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 166 6.9e-19 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 159 1.2e-18 2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 159 1.2e-18 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 164 1.3e-18 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 164 1.3e-18 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 156 1.3e-18 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 159 1.7e-18 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 159 3.3e-18 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 159 3.3e-18 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 156 5.7e-18 2
UNIPROTKB|D6RAF8 - symbol:HNRNPD "Heterogeneous nuclear r... 167 5.9e-18 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 156 6.1e-18 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 151 6.5e-18 2
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 156 8.2e-18 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 153 1.1e-17 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 156 1.5e-17 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 156 1.6e-17 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 150 1.7e-17 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 156 1.8e-17 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 153 2.7e-17 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 156 4.1e-17 2
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 157 1.2e-16 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 153 2.1e-16 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 153 2.1e-16 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 144 3.6e-16 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 156 4.9e-16 2
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 201 5.3e-16 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 150 7.5e-16 2
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 150 7.5e-16 2
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 153 1.0e-15 2
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 153 1.0e-15 2
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 153 1.0e-15 2
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 194 2.0e-15 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 146 4.1e-15 2
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 151 1.3e-14 2
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 124 1.6e-14 3
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 129 1.6e-14 2
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 192 2.1e-14 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 182 3.8e-14 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 132 5.4e-14 3
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 140 2.2e-13 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 135 2.2e-13 3
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 136 2.6e-13 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 134 2.7e-13 2
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 187 2.9e-13 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 178 3.2e-13 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 136 3.3e-13 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 138 3.5e-13 2
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 189 3.7e-13 1
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 116 4.0e-13 3
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 137 1.0e-12 2
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 1.1e-12 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 137 1.3e-12 2
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 137 1.3e-12 2
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 137 1.3e-12 2
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 169 1.3e-12 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 130 1.4e-12 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 135 1.4e-12 2
UNIPROTKB|J9NZR9 - symbol:J9NZR9 "Uncharacterized protein... 130 1.4e-12 2
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 127 1.5e-12 3
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 116 1.5e-12 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 146 1.6e-12 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 134 1.8e-12 2
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 117 2.2e-12 2
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 115 2.4e-12 2
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 120 2.4e-12 2
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 120 2.6e-12 3
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 120 2.6e-12 3
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 180 2.6e-12 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 115 2.7e-12 2
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 139 3.9e-12 2
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 135 4.1e-12 2
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 4.1e-12 2
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 4.2e-12 2
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 4.2e-12 2
UNIPROTKB|F8VTQ5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 113 4.4e-12 2
UNIPROTKB|F1N3T3 - symbol:F1N3T3 "Uncharacterized protein... 118 4.6e-12 3
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 123 4.8e-12 3
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 5.0e-12 2
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 5.0e-12 2
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 115 5.0e-12 2
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 115 5.0e-12 2
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 115 5.0e-12 2
WARNING: Descriptions of 587 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 916 (327.5 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 178/263 (67%), Positives = 209/263 (79%)
Query: 89 PILSLLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLI 148
PI LLEPFSK+Q+++LL+EAAE H DVA+R+R+VADEDPVHRKIFVHGLGWDTK ETLI
Sbjct: 98 PIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLI 157
Query: 149 DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208
+AFKQYGEIEDCKAV DK+SGKSKGYGFIL+K+RSGAR ALK+PQKKIG+RMTACQLAS
Sbjct: 158 EAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASK 217
Query: 209 GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEYTQRKIFVSNVGSELEPQKLLAFF 268
G SE+TQ+KI+VSNVG+EL+PQKLL FF
Sbjct: 218 GPVFGGAPIAAAAVSAPAQHSN------------SEHTQKKIYVSNVGAELDPQKLLMFF 265
Query: 269 SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPK 328
SK+GEIEEGPLG+DK TG+PKGFCLFVYK+ ++AK+ALEEPHK FEGHIL+CQ+AIDGPK
Sbjct: 266 SKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPK 325
Query: 329 PGKSR--HHNAQ---NPHFQRNE 346
PGK + HHN NP +QRN+
Sbjct: 326 PGKQQQHHHNPHAYNNPRYQRND 348
Score = 57 (25.1 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 406 YGNQTNVSPSVIGGYANQ----GGYPNQQMPXXXXXXXXXXXXXXXXPYMGH 453
YG Q ++P + GY Q GGY Q PYMGH
Sbjct: 428 YGTQA-MAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPYGTPYMGH 478
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 528 (190.9 bits), Expect = 2.1e-95, Sum P(3) = 2.1e-95
Identities = 102/121 (84%), Positives = 111/121 (91%)
Query: 89 PILSLLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLI 148
PI LLEPFSKDQL+ LL+EAAE HRDVA+R+R VADED VHRKIFVHGLGWDTKA++LI
Sbjct: 86 PIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLGWDTKADSLI 145
Query: 149 DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208
DAFKQYGEIEDCK V DKVSG+SKGYGFILFK+RSGAR ALK+PQKKIG RMTACQLASI
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 209 G 209
G
Sbjct: 206 G 206
Score = 375 (137.1 bits), Expect = 2.1e-95, Sum P(3) = 2.1e-95
Identities = 68/107 (63%), Positives = 87/107 (81%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E QRKI+VSNV ++++PQKLL FFS++GEIEEGPLG+DKATG+PKGF LFVY+++++AK
Sbjct: 223 ENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAK 282
Query: 304 KALEEPHKNFEGHILNCQRAIDGPKPGKSRHHNA----QNPHFQRNE 346
KALEEPHK FEGH+L+C +A DGPK K HN QN +QRN+
Sbjct: 283 KALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNHNSHNQNSRYQRND 329
Score = 153 (58.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 33/101 (32%), Positives = 54/101 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
+ RKIFV +G + + L+ F +YGEIE+ +DK +G+ KG+ ++K+ A+
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 304 KALEEPHKNFEGHILNCQRAIDGPKPGK-----SRHHNAQN 339
AL++P K + CQ A GP G ++H N +N
Sbjct: 184 NALKQPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPEN 224
Score = 140 (54.3 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
V RKI+V + D + L++ F ++GEIE+ DK +G+ KG+ ++++ A+KA
Sbjct: 225 VQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKA 284
Query: 189 LKEPQKKIGNRMTACQLASIG 209
L+EP K + C A+ G
Sbjct: 285 LEEPHKTFEGHVLHCHKANDG 305
Score = 79 (32.9 bits), Expect = 2.1e-95, Sum P(3) = 2.1e-95
Identities = 21/55 (38%), Positives = 22/55 (40%)
Query: 402 MQGTYGNQTNVSPSVIGGYANQ----GGYPNQQMPXXXXXXXXXXXXXXXXPYMG 452
M YG Q N+SP V GY Q GGY QQ P PYMG
Sbjct: 397 MPSGYGTQANISPGVYPGYGAQAGYQGGYQTQQ-PGQGGAGRGQHGAGYGGPYMG 450
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 282 (104.3 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 58/117 (49%), Positives = 74/117 (63%)
Query: 93 LLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFK 152
++E F+ DQL++LL+EA H DV VR AD D RK+F+ GL DT E L F
Sbjct: 37 IIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFS 96
Query: 153 QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209
YG++E+ + DKV+GKSKGYGF+ F GA ALKEP KKI R+T QLA+ G
Sbjct: 97 SYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASG 153
Score = 244 (91.0 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 47/97 (48%), Positives = 65/97 (67%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
++ + RKI+V+NV ++ +LL F YG++EEGPLG DK TGK +GF LFVYKT + A
Sbjct: 162 ADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGA 221
Query: 303 KKALEEPHKNFEGHILNCQRAIDGPKPGKSRHHNAQN 339
+ AL +P K +G LNC+ A+DG K GK AQ+
Sbjct: 222 QAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQD 258
Score = 174 (66.3 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 44/121 (36%), Positives = 69/121 (57%)
Query: 90 ILSLLEPFSK-DQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLI 148
+L+L EP K D V + + AA ++ S Q+AD RKI+V + +D A+ L+
Sbjct: 130 LLALKEPSKKIDGRVTVTQLAASGNQGTGS---QIADISM--RKIYVANVPFDMPADRLL 184
Query: 149 DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208
+ F YG++E+ DKV+GKS+G+ ++KT GA+ AL +P K I + C+LA
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVD 244
Query: 209 G 209
G
Sbjct: 245 G 245
Score = 157 (60.3 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S+ +QRK+F+ + ++ + L + FS YG++EE + +DK TGK KG+ + VD A
Sbjct: 70 SDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
Query: 303 KKALEEPHKNFEGHILNCQRAIDG 326
AL+EP K +G + Q A G
Sbjct: 130 LLALKEPSKKIDGRVTVTQLAASG 153
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 66/117 (56%), Positives = 88/117 (75%)
Query: 93 LLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFK 152
LL+P+SKDQLV+L+ A+ + S V + AD D HRKIFV+GL W+T ETL+ F+
Sbjct: 66 LLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFE 125
Query: 153 QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209
YGEIE+C V DK +GK+KG+GF++FKTR GA++ALKEP+K+I NR CQLAS+G
Sbjct: 126 GYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMG 182
Score = 175 (66.7 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 41/97 (42%), Positives = 52/97 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
+ T RKIFV + E + L+ F YGEIEE + IDKATGK KGF ++KT AK
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 304 KALEEPHKNFEGHILNCQRAIDGPKPGKSRHHNAQNP 340
+AL+EP K CQ A GP + H+ P
Sbjct: 160 EALKEPKKRILNRTATCQLASMGPA-ASGKGHDQPGP 195
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 320 (117.7 bits), Expect = 4.9e-28, P = 4.9e-28
Identities = 61/118 (51%), Positives = 80/118 (67%)
Query: 90 ILSLLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLID 149
I LL +SK++LVNL+ + AE + S + + AD D R IFV G GWDT E L
Sbjct: 367 IKQLLVAYSKEELVNLIYKTAEKGSRLISAILESADRDIAQRNIFVRGFGWDTTQENLKT 426
Query: 150 AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207
AF+ YGEIE+C V DK +G+ KGYGF++FKTR GAR+ALK P+K++ NR+ C LAS
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLAS 484
Score = 152 (58.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
+ QR IFV G + + L F YGEIEE + +DK TG+ KG+ ++KT A+
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 304 KALEEPHKNFEGHILNCQRAIDGPKPGKS 332
+AL+ P K I+ C A + KPGK+
Sbjct: 464 EALKRPEKRMYNRIVVCNLASE--KPGKA 490
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 59/114 (51%), Positives = 79/114 (69%)
Query: 90 ILSLLEPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLID 149
I +LLE +SK++L+NL+ + AE + S V + AD D R IFV GLGWDT E L
Sbjct: 122 IKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHENLKA 181
Query: 150 AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203
AF+ YGEI +C V DK +G++KG+GF+LFKTR GAR ALK P+K++ NR +C
Sbjct: 182 AFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSC 235
Score = 138 (53.6 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 32/86 (37%), Positives = 46/86 (53%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
+QR IFV +G + + L A F YGEI E + +DK TG+ KGF ++KT A+ A
Sbjct: 161 SQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
Query: 306 LEEPHKNFEGHILNC--QRAIDGPKP 329
L+ P K ++C R + KP
Sbjct: 221 LKNPEKRMYNRTVSCLPARPFNSGKP 246
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 158 (60.7 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK K L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 61 KEHRLDGRL 69
Score = 128 (50.1 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D T K +GF +K D KK LE
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ N G C+ + PK
Sbjct: 144 KKFHNVSGS--KCEIKVAQPK 162
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K LE+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNP 93
Score = 110 (43.8 bits), Expect = 0.00038, P = 0.00038
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 95 EPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQY 154
EP S ++++ +E + R + + +DPV +KIFV GL + E + + F ++
Sbjct: 50 EPGSVEKVLEQ-KEHRLDGRLIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEF 107
Query: 155 GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN 198
GEIE + D + K +G+ FI FK +K L +KK N
Sbjct: 108 GEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL---EKKFHN 148
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 156 (60.0 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 62 KEHKLNGKV 70
Score = 121 (47.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 75 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 133
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 134 FKEEEPVKKIMEKKYHNVG--LSKCEI 158
Score = 118 (46.6 bits), Expect = 8.6e-22, Sum P(2) = 8.6e-22
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 308 EPHKN 312
+ + N
Sbjct: 146 KKYHN 150
Score = 108 (43.1 bits), Expect = 0.00065, P = 0.00065
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++K ++ K +++
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 309 PHKNFEGHILNCQRA 323
G +++ +RA
Sbjct: 62 KEHKLNGKVIDPKRA 76
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 158 (60.7 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK K L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 61 KEHRLDGRL 69
Score = 128 (50.1 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D T K +GF +K D KK LE
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ N G C+ + PK
Sbjct: 144 KKFHNVSGS--KCEIKVAQPK 162
Score = 112 (44.5 bits), Expect = 0.00042, P = 0.00042
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K LE+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNP 93
Score = 110 (43.8 bits), Expect = 0.00070, P = 0.00070
Identities = 32/104 (30%), Positives = 53/104 (50%)
Query: 95 EPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQY 154
EP S ++++ +E + R + + +DPV +KIFV GL + E + + F ++
Sbjct: 50 EPGSVEKVLEQ-KEHRLDGRLIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEF 107
Query: 155 GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN 198
GEIE + D + K +G+ FI FK +K L +KK N
Sbjct: 108 GEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL---EKKFHN 148
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 163 (62.4 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK SG K L +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 192 PQKKIGNR 199
+ ++ R
Sbjct: 156 KEHRLDGR 163
Score = 118 (46.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 95 EPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQY 154
EP D+++ +E + R + + ++PV +KIFV GL +T E + + F +
Sbjct: 145 EPSGVDKVL-AQKEHRLDGRQIDPKKAMAMKKEPV-KKIFVGGLNPETTEERIREYFGAF 202
Query: 155 GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI-GNRMTA 202
GEIE + D S K +G+ FI FK +K L++ + G + T+
Sbjct: 203 GEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTS 251
Score = 116 (45.9 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +++ +F +GEIE L +D + K +GF +K +A KK LE
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 308 EPHKNFEG 315
+ + N G
Sbjct: 239 KKYHNVSG 246
Score = 43 (20.2 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 403 QGTYGNQTNVSPSVIGGYANQGGYPN 428
QG YGNQ GY GGY N
Sbjct: 303 QG-YGNQGYGGYGGQQGYGGYGGYGN 327
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 167 (63.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 121 (47.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
Score = 118 (46.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 308 EPHKN 312
+ + N
Sbjct: 242 KKYHN 246
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 160 (61.4 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 113 HRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSK 172
H + + R + A K+F+ GL WDT + L D F ++GE+ DC D ++G+S+
Sbjct: 12 HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSR 71
Query: 173 GYGFILFKTRSGARKALKEPQKKIGNRM 200
G+GF+LFK K + + + K+ ++
Sbjct: 72 GFGFVLFKESESVDKVMDQKEHKLNGKV 99
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 104 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 162
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 163 FKEEEPVKKIMEKKYHNVG--LSKCEI 187
Score = 118 (46.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 308 EPHKN 312
+ + N
Sbjct: 175 KKYHN 179
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 164 (62.8 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++G++ DC D +
Sbjct: 72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPI 131
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 132 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 164
Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 169 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 228 FKEEEPVKKIMEKKYHNVG--LSKCEI 252
Score = 118 (46.6 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 308 EPHKN 312
+ + N
Sbjct: 240 KKYHN 244
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 167 (63.8 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
Score = 118 (46.6 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 308 EPHKN 312
+ + N
Sbjct: 242 KKYHN 246
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 167 (63.8 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
Score = 118 (46.6 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 308 EPHKN 312
+ + N
Sbjct: 242 KKYHN 246
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 167 (63.8 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
Score = 118 (46.6 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 308 EPHKN 312
+ + N
Sbjct: 242 KKYHN 246
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 156 (60.0 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 115 KEHKLNGKV 123
Score = 120 (47.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ + + ++PV +KIFV GL DT E + + F YGE+E + + + K +G+ FI
Sbjct: 128 KAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFIT 186
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ IG ++ C++
Sbjct: 187 FKEEEPVKKIMEKKYHNIG--LSKCEV 211
Score = 119 (46.9 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F YGE+E L ++ T K +GFC +K + KK +E
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 308 EPHKN 312
+ + N
Sbjct: 199 KKYHN 203
Score = 39 (18.8 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 403 QGTYGNQTNVSPSVIGGYANQGGYPNQQ 430
QG YG S Y G Y NQQ
Sbjct: 269 QG-YGGYGGYDYSGYNNYYGYGDYSNQQ 295
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 166 (63.5 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 171 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 230 FKEEEPVKKIMEKKYHNVG--LSKCEI 254
Score = 118 (46.6 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 308 EPHKN 312
+ + N
Sbjct: 242 KKYHN 246
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 159 (61.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 136 KEHRLDGRV 144
Score = 119 (46.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L ID K +GF +K D KK LE
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 219 KKFHTVSGS--KCEIKVAQPK 237
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 168
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 159 (61.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 136 KEHRLDGRV 144
Score = 119 (46.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L ID K +GF +K D KK LE
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 219 KKFHTVSGS--KCEIKVAQPK 237
Score = 110 (43.8 bits), Expect = 0.00084, P = 0.00084
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 168
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 164 (62.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++G++ DC D +
Sbjct: 72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPI 131
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 132 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 164
Score = 121 (47.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 169 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 228 FKEEEPVKKIMEKKYHNVG--LSKCEI 252
Score = 118 (46.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 308 EPHKN 312
+ + N
Sbjct: 240 KKYHN 244
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 164 (62.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/93 (31%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++G++ DC D +
Sbjct: 72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPI 131
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 132 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 164
Score = 121 (47.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 169 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 228 FKEEEPVKKIMEKKYHNVG--LSKCEI 252
Score = 118 (46.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 308 EPHKN 312
+ + N
Sbjct: 240 KKYHN 244
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 156 (60.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 61 KEHKLNGKV 69
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 74 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 132
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 133 FKEEEPVKKIMEKKYHNVG--LSKCEI 157
Score = 119 (46.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 308 EPHKN 312
+ + N
Sbjct: 145 KKYHN 149
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 159 (61.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 149 KEHRLDGRV 157
Score = 119 (46.9 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L ID K +GF +K D KK LE
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 232 KKFHTVSGS--KCEIKVAQPK 250
Score = 110 (43.8 bits), Expect = 0.00092, P = 0.00092
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 149 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 181
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 159 (61.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 135 KEHRLDGRV 143
Score = 119 (46.9 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L ID K +GF +K D KK LE
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 218 KKFHTVSGS--KCEIKVAQPK 236
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 159 (61.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK S K L +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 136 KEHRLDGRV 144
Score = 119 (46.9 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L ID K +GF +K D KK LE
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 219 KKFHTVSGS--KCEIKVAQPK 237
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 156 (60.0 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK K L+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 125 KEHRLDGRL 133
Score = 120 (47.3 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E ++ +F +GEIE L +D T K +GF +K D KK LE
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 308 EPHKNFEGHILNCQRAIDGPKPGKSRHHNAQNPHF 342
+ N G C+ I PK + + + F
Sbjct: 208 KKFHNVSGS--KCEIKIAQPKEVYQQQYGGRGGSF 240
Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
Identities = 24/93 (25%), Positives = 48/93 (51%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K ++ K LE
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNP 157
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 167 (63.8 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E E H + + R + A K+F+ GL WDT + L D F ++GE+ DC D +
Sbjct: 74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK K + + + K+ ++
Sbjct: 134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
Score = 108 (43.1 bits), Expect = 0.00076, P = 0.00076
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++K ++ K +++
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 309 PHKNFEGHILNCQRA 323
G +++ +RA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 68 (29.0 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287
+KIFV + + +K+ +F +GE+E L +D T K
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 156 (60.0 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 106 KEHKLNGKV 114
Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 119 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 177
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 178 FKEEEPVKKIMEKKYHNVG--LSKCEI 202
Score = 118 (46.6 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 308 EPHKN 312
+ + N
Sbjct: 190 KKYHN 194
Score = 111 (44.1 bits), Expect = 0.00073, P = 0.00073
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+E + K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++K ++
Sbjct: 40 NEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 99
Query: 303 KKALEEPHKNFEGHILNCQRA 323
K +++ G +++ +RA
Sbjct: 100 DKVMDQKEHKLNGKVIDPKRA 120
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 151 (58.2 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 193 QKKIGNRM 200
+ K+ ++
Sbjct: 61 EHKLNGKV 68
Score = 122 (48.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 73 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 131
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 132 FKEEEPVKKIMEKKYHNVG--LSKCEI 156
Score = 119 (46.9 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 308 EPHKN 312
+ + N
Sbjct: 144 KKYHN 148
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 156 (60.0 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 131 KEHRLDGRV 139
Score = 115 (45.5 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D + K +GF +K + KK LE
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 214 KKFHTISGS--KCEIKVAQPK 232
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 163
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 153 (58.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + L++
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 192 PQKKIGNR 199
+ ++ R
Sbjct: 106 KEHRLDGR 113
Score = 120 (47.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 29/81 (35%), Positives = 40/81 (49%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F +GEIE L D T K +GF +K A KK LE
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ + N G C+ I PK
Sbjct: 189 KKYHNVCGS--KCEIKIAQPK 207
Score = 111 (44.1 bits), Expect = 0.00076, P = 0.00076
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +FSK+GE+ + + +D TG+ +GF ++K D+ + L++
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G ++ +RA+ K P K NP
Sbjct: 106 KEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNP 138
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 156 (60.0 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 131 KEHRLDGRV 139
Score = 112 (44.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D K +GF +K + KK LE
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 214 KKFHTVSGS--KCEIKVAQPK 232
Score = 110 (43.8 bits), Expect = 0.00081, P = 0.00081
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 163
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 156 (60.0 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 131 KEHRLDGRV 139
Score = 112 (44.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D K +GF +K + KK LE
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 214 KKFHTVSGS--KCEIKVAQPK 232
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 163
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 150 (57.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC +G+SKG+GFILFK + K L +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 125 KEHRLDGRV 133
Score = 119 (46.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D T K +GF +K + KK LE
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 208 KKFHTISGS--KCEIKVAQPK 226
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 156 (60.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 61 KEHRLDGRV 69
Score = 110 (43.8 bits), Expect = 0.00071, P = 0.00071
Identities = 23/93 (24%), Positives = 49/93 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNP 340
+G +++ ++A+ K P K NP
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNP 93
Score = 109 (43.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D + K +GF +K + KK LE
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 308 EPHKNFEG 315
+ G
Sbjct: 144 KKFHTISG 151
Score = 109 (43.4 bits), Expect = 0.00093, P = 0.00093
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+DPV +KIFV GL + E + + F ++GEIE + D S K +G+ FI FK
Sbjct: 80 KDPV-KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPV 138
Query: 186 RKALKE 191
+K L++
Sbjct: 139 KKVLEK 144
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 153 (58.9 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D F ++G++ DC D ++G+S+G+GF+LFK K + +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 137 KEHKLNGKV 145
Score = 121 (47.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 119 RVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
R + + ++PV +KIFV GL DT E + + F +GE+E + D + K +G+ FI
Sbjct: 150 RAKAMKTKEPV-KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 208
Query: 179 FKTRSGARKALKEPQKKIGNRMTACQL 205
FK +K +++ +G ++ C++
Sbjct: 209 FKEEEPVKKIMEKKYHNVG--LSKCEI 233
Score = 118 (46.6 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + +K+ +F +GE+E L +D T K +GFC +K + KK +E
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 308 EPHKN 312
+ + N
Sbjct: 221 KKYHN 225
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 156 (60.0 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 131 KEHRLDGRV 139
Score = 112 (44.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + E +K+ +F ++GEIE L +D K +GF +K + KK LE
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G C+ + PK
Sbjct: 214 KKFHTVSGS--KCEIKVAQPK 232
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 157 (60.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 36/121 (29%), Positives = 63/121 (52%)
Query: 92 SLLEPFSKDQ----LVNLLREAAENHRDVASRVRQVADEDPVHR--------KIFVHGLG 139
SL PFS + L L R A E+ +++ + A+ ++ K+F+ GL
Sbjct: 15 SLPPPFSTPRGSPSLTALSRPAMEDATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLS 74
Query: 140 WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199
WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+ + K+ +
Sbjct: 75 WDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGK 134
Query: 200 M 200
+
Sbjct: 135 L 135
Score = 107 (42.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 211 SRYHQIGSG---KCEIKVAQPK 229
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 153 (58.9 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
E AE + AS+ +Q D+ K+F+ GL WDT + L + ++GE+ DC D V
Sbjct: 13 EFAEGSKINASKNQQ--DDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPV 66
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
+G+S+G+GF+LFK + K L+ + K+ ++
Sbjct: 67 TGRSRGFGFVLFKDAASVEKVLELKEHKLDGKL 99
Score = 107 (42.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 175 SRYHQIGSG---KCEIKVAQPK 193
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 153 (58.9 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 106 LREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD 165
+ E AE + AS+ +Q D+ K+F+ GL WDT + L + ++GE+ DC D
Sbjct: 10 IEEFAEGSKINASKNQQ--DDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 63
Query: 166 KVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
V+G+S+G+GF+LFK + K L+ + K+ ++
Sbjct: 64 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 98
Score = 107 (42.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 174 SRYHQIGSG---KCEIKVAQPK 192
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 144 (55.7 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 109 AAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS 168
A E++ D A ED K+F+ GL W+T ++L D F+Q+GE+ DC + D +
Sbjct: 144 AMESNEDNAEETSPFNREDG---KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTT 200
Query: 169 GKSKGYGFILFK 180
G+S+G+GF+ FK
Sbjct: 201 GRSRGFGFLTFK 212
Score = 124 (48.7 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV V + ++ FF+++G + + L +DK TG+P+GF Y+ A + + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 309 PHKNFEGHILNCQRAIDGP--KPGKSRH----HNAQNPHFQRN 345
P+ G + +RA + RH H NP++ +N
Sbjct: 308 PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQN 350
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 156 (60.0 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT + L D F ++GE+ DC D +G+S+G+GFILFK + K L +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 192 PQKKIGNRM 200
+ ++ R+
Sbjct: 130 KEHRLDGRV 138
Score = 111 (44.1 bits), Expect = 0.00087, P = 0.00087
Identities = 24/99 (24%), Positives = 50/99 (50%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV + + + L +F+K+GE+ + + +D TG+ +GF ++K + +K L++
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 309 PHKNFEGHILNCQRAIDGPK-PGKSRHHNAQNPHFQRNE 346
+G +++ ++A+ K P K NP E
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEE 168
Score = 102 (41.0 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 248 RKIFVSNVGSELEPQ-KLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306
+KIFV + E + K+ +F ++GEIE L +D K +GF +K + KK L
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 307 EEPHKNFEGHILNCQRAIDGPK 328
E+ G C+ + PK
Sbjct: 213 EKKFHTVSGS--KCEIKVAQPK 232
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 201 (75.8 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D K+FV GL W+T++ETL F+QYGEI + + DK +G+SKGYGF+ F+ AR
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
+A +P I R C LAS+G
Sbjct: 80 RACADPTPIIDGRRANCNLASLG 102
Score = 128 (50.1 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E + + L F +YGEI E + DK TG+ KG+ ++ +AA++A
Sbjct: 22 TFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
Query: 306 LEEPHKNFEGHILNCQRAIDG-PKP 329
+P +G NC A G P+P
Sbjct: 82 CADPTPIIDGRRANCNLASLGRPRP 106
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 150 (57.9 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 112 KEHKLDGKL 120
Score = 107 (42.7 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 196 SRYHQIGSG---KCEIKVAQPK 214
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 150 (57.9 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L + ++GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 112 KEHKLDGKL 120
Score = 107 (42.7 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 196 SRYHQIGSG---KCEIKVAQPK 214
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 106 LREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD 165
+ E AE + AS+ +Q D+ K+F+ GL WDT + L + ++GE+ DC D
Sbjct: 129 IEEFAEGSKINASKNQQ--DDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 182
Query: 166 KVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
V+G+S+G+GF+LFK + K L+ + K+ ++
Sbjct: 183 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Score = 107 (42.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 293 SRYHQIGSG---KCEIKVAQPK 311
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 106 LREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD 165
+ E AE + AS+ +Q D+ K+F+ GL WDT + L + ++GE+ DC D
Sbjct: 129 IEEFAEGSKINASKNQQ--DDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 182
Query: 166 KVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
V+G+S+G+GF+LFK + K L+ + K+ ++
Sbjct: 183 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Score = 107 (42.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 293 SRYHQIGSG---KCEIKVAQPK 311
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 153 (58.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 106 LREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD 165
+ E AE + AS+ +Q D+ K+F+ GL WDT + L + ++GE+ DC D
Sbjct: 129 IEEFAEGSKINASKNQQ--DDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTD 182
Query: 166 KVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200
V+G+S+G+GF+LFK + K L+ + K+ ++
Sbjct: 183 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKL 217
Score = 107 (42.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ +F +GEIE L +D T + +GFC Y + KK LE
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 293 SRYHQIGSG---KCEIKVAQPK 311
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D KI+V GL W T+ E LI+ FK++GEI VCD+ + +S+GYGF+ FK A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
+A K+P I R+T C+LA +G
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVG 91
Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KI+V + + L+ FF ++GEI + D+ T + +G+ +K ++A +A
Sbjct: 11 TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
Query: 306 LEEPHKNFEGHILNCQRAIDGPK--PGKSRHHN 336
++P+ EG I NC+ A G K P +S+ N
Sbjct: 71 CKDPNPTIEGRITNCKLAFVGAKVKPNQSQPSN 103
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 146 (56.5 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D ++GE+ DC D ++G+S+G+GF+LFK + L+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 91 TEHKLDGKL 99
Score = 103 (41.3 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + ++ ++L +F YGEIE L D T + +GFC + + +K LE
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 175 NRYHQIGSG---KCEIKVAQPK 193
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 151 (58.2 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 193 QKKIGNRM 200
+ K+ ++
Sbjct: 61 EHKLNGKV 68
Score = 103 (41.3 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 18/74 (24%), Positives = 41/74 (55%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++K ++ K +++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 310 HKNFEGHILNCQRA 323
G +++ +RA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 55 (24.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIE 275
+KIFV + + +K+ +F +GE+E
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEVE 111
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 124 (48.7 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
D+D RK+FV GL W+T + L D F +YGEIE D +G+S+G+ FI+F
Sbjct: 53 DDD---RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104
Score = 120 (47.3 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
RK+FV + E ++L F KYGEIE + D TG+ +GF V+ +A K
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 308 EPHKNFEGHILNCQRAIDGPKPGKSRH 334
+ HI+N ++ +D PK K+RH
Sbjct: 116 A-----DEHIINSKK-VD-PKKAKARH 135
Score = 112 (44.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +E+ +++ +F ++G I E + DK + KGFC + + L+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 309 PHKNFEGHILNCQRAIDGPKP 329
P + G ++ +RA PKP
Sbjct: 197 PKQKIAGKEVDVKRAT--PKP 215
Score = 102 (41.0 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
H KIFV GL + E + F Q+G I + + DK + KG+ FI F + L
Sbjct: 135 HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL 194
Query: 190 KEPQKKIGNR 199
K P++KI +
Sbjct: 195 KTPKQKIAGK 204
Score = 48 (22.0 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 418 GGYANQGGYPNQ 429
GGY +GGY NQ
Sbjct: 236 GGYGGRGGYNNQ 247
Score = 39 (18.8 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 403 QGTYGNQTNVSPSVIGGYAN-QGGY 426
+G Y NQ + S GGY GGY
Sbjct: 241 RGGYNNQWDGQGSY-GGYGGGYGGY 264
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 129 (50.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 121 RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
R AD K+F+ GL WDT + L + F +YG + D K + D +G+S+G+GF+ F+
Sbjct: 149 RSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
Query: 181 TRSGARKALK 190
S + +K
Sbjct: 209 KPSSVDEVVK 218
Score = 127 (49.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV +G ++ P++ FFS++G I + L +DK TG+ +GF Y + DA + +
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSRHHNAQN 339
+F+ + +RA KS ++ N
Sbjct: 304 KFIDFKDRKIEIKRAEPRHMQQKSSNNGGNN 334
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D K+FV GL W+T++ETL F QYG+I + + DK +G+SKGYGF+ F+ AR
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
+A +P I R C LAS+G
Sbjct: 80 RACVDPTPIIDGRRANCNLASLG 102
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E + + L F +YG+I E + DK TG+ KG+ ++ +AA++A
Sbjct: 22 TFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
Query: 306 LEEPHKNFEGHILNCQRA 323
+P +G NC A
Sbjct: 82 CVDPTPIIDGRRANCNLA 99
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 114 RDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
RDVA + D + KI+V GL W+T+ E L F+Q+G+I VCD+ +G+S+G
Sbjct: 36 RDVAQHYAN-ENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEG 94
Query: 174 YGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209
YGF+ F+ A +A + P+ I R C LA IG
Sbjct: 95 YGFVTFRDAESATRACQNPKPVIDGREAKCNLAYIG 130
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 132 (51.5 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+DP K+F+ GL W T AE L D F ++GE+ +C + D + +++G+GFI F S
Sbjct: 42 QDP--GKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSV 99
Query: 186 RKALKEPQKKIGNR 199
K L + ++ +
Sbjct: 100 DKVLNNREHELDGK 113
Score = 118 (46.6 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 31/119 (26%), Positives = 59/119 (49%)
Query: 91 LSLLEPFSKDQLVNLLREAAENHR-D--VASRVRQVADEDPVHRKIFVHGLGWDTKAETL 147
++ ++P S D+++N + + D VA R A +K+F+ GL + E +
Sbjct: 91 ITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDM 150
Query: 148 IDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206
F+ YG++ED + DK + + +G+GF+ F + A K + +I +M C+ A
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKA 209
Score = 103 (41.3 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+F+ + + + + +F YG++E+ L DKAT + +GF + + + A K E
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCE 193
Query: 308 EPHKNFEGHILNCQRA 323
G ++ C++A
Sbjct: 194 IHFHEINGKMVECKKA 209
Score = 40 (19.1 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 406 YGNQTNVSPSVIGGYAN---QGGYPNQ 429
Y N TNV ++ GGY+ GG N+
Sbjct: 255 YPNFTNVFNNMPGGYSGLSTPGGSSNR 281
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 140 (54.3 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 117 ASRVRQVADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY 174
AS+V + D H K+F+ GL W T ++L D F ++GEI +C + D + +S+G+
Sbjct: 5 ASQVTSGSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGF 64
Query: 175 GFILFKTRSGARKALKEPQKKIGNR 199
GFI F S K L +P ++ ++
Sbjct: 65 GFITFADVSSVDKVLAQPHHELDSK 89
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL T E + F+Q+G++ED + DK + + +G+GF+ F+ K +
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 99 (39.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + +F ++G++E+ L DK T + +GF ++ D +K E
Sbjct: 110 KKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCE 169
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 170 IHFHEINNKMVECKKA 185
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 135 (52.6 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV G+ W+T AET + F ++GE+ D + D+++G +G+GF+ F + A K L+E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Score = 108 (43.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+FV V E + +F K+GE+ + + D+ TG P+GF + A+K LEE
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 309 PH 310
H
Sbjct: 127 DH 128
Score = 91 (37.1 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
RKIFV + LE +L +F YG+I E + D TG+ +GF ++T D+ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 308 E 308
+
Sbjct: 217 D 217
Score = 46 (21.3 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 403 QGTYGNQTNVSPSVIGGYANQGGY 426
+ +Y + N S+ GY GGY
Sbjct: 256 EDSYSGKANEDYSMYSGYGGYGGY 279
Score = 40 (19.1 bits), Expect = 8.8e-13, Sum P(3) = 8.8e-13
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 404 GTYGNQTNVSPSVIGGYANQGGY 426
G Y + V+P+ GY GGY
Sbjct: 280 GAYAGNSMVNPAGFYGYG--GGY 300
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 136 (52.9 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ DP K+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F +
Sbjct: 16 SQHDP--GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
Query: 184 GARKALKEPQKKIGNR 199
K L +P ++ ++
Sbjct: 74 SVDKVLGQPHHELDSK 89
Score = 130 (50.8 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G++ED + DK + + +G+GF+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 100 (40.3 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + +F ++G++E+ L DK T + +GF ++ D +K E
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 170 IHFHEINNKMVECKKA 185
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 134 (52.2 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+F+ GL W+T ++L + F Q+GE+++C + D +G+S+G+GF+ FK
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFK 159
Score = 110 (43.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV V E Q FF ++G + + L IDK TG+P+GF + + A + AL
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 309 P 309
P
Sbjct: 255 P 255
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 187 (70.9 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 34/83 (40%), Positives = 48/83 (57%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D H K+FV GL W+T + + F Q+GEI + + DK +GKSKGYGF+ F+ A
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
+A+ +P I R C +AS G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG 95
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E ++ +F ++GEI E + DKATGK KG+ ++ D+A +A
Sbjct: 15 THTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRA 74
Query: 306 LEEPHKNFEGHILNCQRAIDG-PKPGKSR 333
+ +P+ +G NC A G P+P R
Sbjct: 75 VADPNPVIDGRKANCNIASFGRPRPSTPR 103
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 178 (67.7 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
ED K+FV GL W+T +L + F+Q+G+I + + DK SG+SKGYGF+ F A
Sbjct: 2 EDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAA 61
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+KA +P I R C LA+ G
Sbjct: 62 QKACVDPAPVIDGRRANCNLAAFG 85
Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E L +F ++G+I E + DK++G+ KG+ + +AA+KA
Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
Query: 306 LEEPHKNFEGHILNCQRAIDGPKPGK 331
+P +G NC A G + K
Sbjct: 65 CVDPAPVIDGRRANCNLAAFGVQRSK 90
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 136 (52.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ DP K+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F +
Sbjct: 16 SQHDP--GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
Query: 184 GARKALKEPQKKIGNR 199
K L +P ++ ++
Sbjct: 74 SVDKVLGQPHHELDSK 89
Score = 130 (50.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G++ED + DK + + +G+GF+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 100 (40.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + +F ++G++E+ L DK T + +GF ++ D +K E
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 170 IHFHEINNKMVECKKA 185
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 138 (53.6 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ DP K+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F +
Sbjct: 16 SQHDP--GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAA 73
Query: 184 GARKALKEPQKKIGNR 199
K L +P ++ ++
Sbjct: 74 SVDKVLAQPHHELDSK 89
Score = 130 (50.8 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G++ED + DK + + +G+GF+ F+ K +
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 170 IHFHEINNKMVECKKA 185
Score = 100 (40.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + +F ++G++E+ L DK T + +GF ++ D +K E
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 170 IHFHEINNKMVECKKA 185
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 189 (71.6 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 36/83 (43%), Positives = 49/83 (59%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D + K+FV GL W+T ET+ F+Q+GEI + + DK SG+SKGYGF+ F+ AR
Sbjct: 9 DTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
A + I R C LAS+G
Sbjct: 69 SACVDATPVIDGRRANCNLASLG 91
Score = 112 (44.5 bits), Expect = 0.00073, P = 0.00073
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E + + F ++GEI E + DKA+G+ KG+ ++ +AA+ A
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
Query: 306 LEEPHKNFEGHILNCQRAIDG---PKPGKSRH 334
+ +G NC A G KP H
Sbjct: 71 CVDATPVIDGRRANCNLASLGLQRSKPSTPNH 102
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 116 (45.9 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L F+Q+G++ DC + D + +S+G+GF+ + + S A+
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 73 ARPHKVDGRV 82
Score = 111 (44.1 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E + +F YG+IE + +++TGK +GFC + D K
Sbjct: 102 TVKKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKI 161
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + H NC+
Sbjct: 162 VAQKYHTINSH--NCE 175
Score = 43 (20.2 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 401 PMQGTYGNQTNVSPSVIGGYANQGG 425
PM+G N P GGY + GG
Sbjct: 277 PMKGNNFGGRNSGPYGGGGYGSGGG 301
Score = 37 (18.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 404 GTYGNQTNVSPSVIGGYANQGG 425
G YG GGY N GG
Sbjct: 228 GNYGGGPGGYGGGRGGYGNFGG 249
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 137 (53.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 123 VADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
+A D H K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 181 TRSGARKALKEPQKKIGNR 199
++G K L + + ++ ++
Sbjct: 70 DQAGVDKVLAQSRHELDSK 88
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G+++D + DK + + +G+GF+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 95 (38.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF +++ D +K E
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 115 (45.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 93 ARPHKVDGRV 102
Score = 113 (44.8 bits), Expect = 0.00022, P = 0.00022
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 124 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 180
Score = 112 (44.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 122 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 181
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 182 VIQKYHTVNGH--NCE 195
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 123 VADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
+A D H K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 181 TRSGARKALKEPQKKIGNR 199
++G K L + + ++ ++
Sbjct: 70 DQAGVDKVLAQSRHELDSK 88
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G+++D + DK + + +G+GF+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 94 (38.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF +++ D +K E
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 123 VADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
+A D H K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 181 TRSGARKALKEPQKKIGNR 199
++G K L + + ++ ++
Sbjct: 70 DQAGVDKVLAQSRHELDSK 88
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G+++D + DK + + +G+GF+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 94 (38.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF +++ D +K E
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 123 VADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
+A D H K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 181 TRSGARKALKEPQKKIGNR 199
++G K L + + ++ ++
Sbjct: 70 DQAGVDKVLAQSRHELDSK 88
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G+++D + DK + + +G+GF+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 94 (38.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF +++ D +K E
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 169 (64.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KI+V GL W T+ E LI F+++GEI K VCD + +SKG+GF+ F+ A +A +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 192 PQKKIGNRMTACQLASIG 209
P I R C+LA +G
Sbjct: 70 PNHTIDGRTVNCKLAYLG 87
Score = 123 (48.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306
+ KI+V+ + + L+++F ++GEI + D AT + KGF ++ V++A +A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 307 EEPHKNFEGHILNCQRAIDGPKPGKSRHHNAQ 338
E P+ +G +NC+ A G +R HN Q
Sbjct: 68 ENPNHTIDGRTVNCKLAYLG-----ARVHNYQ 94
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 130 (50.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F + K L +P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 193 QKKIGNR 199
++ ++
Sbjct: 61 HHELDSK 67
Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G++ED + DK + + +G+GF+ F+ K +
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 148 IHFHEINNKMVECKKA 163
Score = 100 (40.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + +F ++G++E+ L DK T + +GF ++ D +K E
Sbjct: 88 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 147
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 148 IHFHEINNKMVECKKA 163
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 135 (52.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 22/68 (32%), Positives = 44/68 (64%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F ++G K L +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 192 PQKKIGNR 199
+ ++ ++
Sbjct: 61 SRHELDSK 68
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+G+++D + DK + + +G+GF+ F++ K +
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 149 IHFHEINNKMVECKKA 164
Score = 95 (38.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF +++ D +K E
Sbjct: 89 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 148
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 149 IHFHEINNKMVECKKA 164
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 130 (50.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L +GE+ DC D V+G+S+G+GF+LFK + K L+
Sbjct: 17 KMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKVLEL 71
Query: 192 PQKKIGNRM 200
+ K+ + +
Sbjct: 72 KEHKLDSML 80
Score = 96 (38.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + +++ + +GEIE L +D T + +GFC Y KK LE
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 308 EP-HKNFEGHILNCQRAIDGPK 328
H+ G C+ + PK
Sbjct: 154 NRYHQIGSG---KCEIKVAEPK 172
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 127 (49.8 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 108 EAAENHRDVASRVRQVADEDPVH-RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK 166
E+A +HR A Q +P RK+F+ GL ++T E+L F+Q+G + DC + D
Sbjct: 14 ESAVSHRVTAMSKEQQTPREPEQLRKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDP 73
Query: 167 VSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199
+ +S+G+GF+ + + A+ K+ R
Sbjct: 74 NTKRSRGFGFVTYSSVGEVDAAMDARPHKVDGR 106
Score = 99 (39.9 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + + + L +F ++G+I+E + +K + K +GF + DA +
Sbjct: 127 TVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRI 186
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 187 VIQKYHTVNGH--NCE 200
Score = 42 (19.8 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 418 GGYANQGG 425
GGY NQGG
Sbjct: 299 GGYGNQGG 306
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 116 (45.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 67 ARPHKVNGRV 76
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 29/77 (37%), Positives = 39/77 (50%)
Query: 111 ENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK 170
E R V+ Q D +KIFV G+ DT+ L D F QYG+ E + V D+ SGK
Sbjct: 78 EPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGK 137
Query: 171 SKGYGFILFKTRSGARK 187
+G+ F+ F R K
Sbjct: 138 KRGFAFVTFDDRDSVDK 154
Score = 110 (43.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+ E + D+ +GK +GF + D+ K
Sbjct: 96 TVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKI 155
Query: 306 LEEPHKNFEGHILNCQ-RAIDGPKPGKSRHHN 336
+ + + GH NC+ R + G+S N
Sbjct: 156 VIQKYHTVNGH--NCEVRKAPSNQRGRSGSGN 185
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 146 (56.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 110 AENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG 169
A +H V++R A RK+FV GL W T ETL F QYGE+ DC + DK +
Sbjct: 38 APSHSSVSARKAAQA----ALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN 93
Query: 170 KSKGYGFILFK 180
+S+G+GF+ FK
Sbjct: 94 QSRGFGFVKFK 104
Score = 74 (31.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 200
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 201 HFHDIMGKKVEVKRA--EPRDSKSQ 223
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 134 (52.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK F+ GL WDT E L+ F++YG I D + D +G+S+G+GF+ F+ LK
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLK 221
Query: 191 E 191
+
Sbjct: 222 D 222
Score = 100 (40.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + + ++ FFS++G+I + L IDK TG+ +GF Y + A K
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSRHHNAQ 338
+ +G + +RA P+ G+ HN Q
Sbjct: 307 KYLTLKGKAMEVKRA--APR-GQ---HNQQ 330
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 117 (46.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 121 RQVADEDPVH-RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+ + ++P RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ +
Sbjct: 3 KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 180 KTRSGARKALKEPQKKIGNRM 200
T A+ K+ R+
Sbjct: 63 ATVEEVDAAMNTTPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + +GH NC+
Sbjct: 163 VIQKYHTVKGH--NCE 176
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 115 (45.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00033, P = 0.00033
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 120 (47.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 114 RDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
RD +R + + + + RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G
Sbjct: 19 RDKKARPKSPKEPEQL-RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRG 77
Query: 174 YGFILFKTRSGARKALKEPQKKIGNRM 200
+GF+ + T A+ K+ R+
Sbjct: 78 FGFVTYATVEEVDAAMNARPHKVDGRV 104
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 126 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 182
Score = 112 (44.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 124 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VIQKYHTVNGH--NCE 197
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 120 (47.3 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 106 (42.4 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + H GH ++A+
Sbjct: 170 VLQKHHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 120 (47.3 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 111 (44.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+++ + + D+ SGK +G+GF F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTF 160
Score = 106 (42.4 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+++ + D+ +GK +GF F + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 170 VLQKYHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 180 (68.4 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
D + K+FV GL W+T + + F+Q+GEI + + DK +GKSKGYGF+ F+ A
Sbjct: 13 DTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 187 KALKEPQKKIGNRMTACQLASIG 209
+A+ +P I R C +AS G
Sbjct: 73 RAVADPNPVIDGRKANCNIASFG 95
Score = 135 (52.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T K+FV + E ++ +F ++GEI E + DK TGK KG+ ++ D+A +A
Sbjct: 15 TYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRA 74
Query: 306 LEEPHKNFEGHILNCQRAIDG-PKPGKSR 333
+ +P+ +G NC A G P+P R
Sbjct: 75 VADPNPVIDGRKANCNIASFGRPRPSPPR 103
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 115 (45.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 10 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 69
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 70 ARPHKVDGRV 79
Score = 105 (42.0 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKK 304
Y KIFV + + E L +F +YG+ E + D+ +GK +GF + D+ K
Sbjct: 97 YLNMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDK 156
Query: 305 ALEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 157 IVIQKYHTVNGH--NCE 171
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 139 (54.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 74 (31.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 152 HFHDIMGKKVEVKRA--EPRDSKSQ 174
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 135 (52.6 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F + K L +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 192 PQKKIGNR 199
P ++ ++
Sbjct: 78 PHHELDSK 85
Score = 49 (22.3 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281
+KIFV + + + + +F ++G++ G G+
Sbjct: 106 KKIFVGGLSANTVVEDVKQYFEQFGKVSAGSPGL 139
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 115 (45.5 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00043, P = 0.00043
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 115 (45.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 115 (45.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 113 (44.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 112
Score = 112 (44.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 54 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 113
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 114 VIQKYHTVNGH--NCE 127
Score = 74 (31.1 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDC 160
RK+F+ GL ++T E+L F+Q+G + DC
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDC 43
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 118 (46.6 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 120 VRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
V++ E+ RK+F+ GL +T E+L + ++Q+GE+ DC + S KS+G+GF+ F
Sbjct: 10 VKREKKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTF 69
Query: 180 KTRSGARKALKEPQKKIGNRM 200
+ + A+ I R+
Sbjct: 70 SSVAEVDAAMAARPHSIDGRV 90
Score = 110 (43.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+FV G+ DT+ L + F++YG+I+ + + D+ SGK +G+GF+ F K +
Sbjct: 112 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIML 171
Query: 191 EPQKKI-GNR 199
+ I G+R
Sbjct: 172 QKYHAINGHR 181
Score = 100 (40.3 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + E L +F KYG+I+ + D+ +GK +GF + D K +
Sbjct: 112 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIML 171
Query: 308 EPHKNFEGHILNCQRAI 324
+ + GH +A+
Sbjct: 172 QKYHAINGHRAEVGKAL 188
Score = 44 (20.5 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 406 YGNQTNVSPSVIGGYANQGGYPNQQ 430
YGNQ S GGY N G +QQ
Sbjct: 287 YGNQWEFSG---GGYGNNFGNYDQQ 308
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 123 (48.4 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV G+ W+T + L + F YGE+ + DK++G+ +G+GF++F S + L+E
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306
Q K+FV + E + KL F+ YGE+ + + DK TG+P+GF ++ + L
Sbjct: 5 QGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL 64
Query: 307 EEPHKNFEGHILNCQRAI 324
+E H + + ++ +RA+
Sbjct: 65 QEKH-SIDTREVDVKRAM 81
Score = 98 (39.6 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + L ++ +F YG + + + D+AT +P+GF + + DA L
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ + G + +RA+ PK
Sbjct: 170 KTFHDLSGKQVEVKRAL--PK 188
Score = 43 (20.2 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 401 PMQGTYGNQTNVSPSVIGGYANQGGYPNQQMP 432
P YGN S + GY G P Q P
Sbjct: 303 PASSGYGNPGYGSGAAHSGYGVPGAAPPTQSP 334
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 115 (45.5 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00051, P = 0.00051
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 175 (66.7 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL WDT E + D F +YG+I + + DK++ +SKGYGF+ FK A +A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 192 PQKKIGNRMTACQLASIG 209
I R C LAS+G
Sbjct: 78 STPIINGRRANCNLASLG 95
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 137 (53.3 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 123 VADEDPVHR--KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
+A D H K+F+ GL W T E L + F Q+GE+++C + D ++ +S+G+GF+ F
Sbjct: 10 LASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 69
Query: 181 TRSGARKALKEPQKKIGNR 199
++G K L + + ++ ++
Sbjct: 70 DQAGVDKVLAQSRHELDSK 88
Score = 120 (47.3 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F+Q+ +++D + DK + + +G+GF+ F++ K +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 87 (35.7 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 16/76 (21%), Positives = 37/76 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++ ++++ L DK T + +GF +++ D +K E
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 111 (44.1 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL + T E+L ++Q+GE+ DC + D S +S+G GF+ F + + A+
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 69 ARPHSIDGRV 78
Score = 106 (42.4 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L + F++YG+I+ + + D+ SG+ +G+GF+ F
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTF 148
Score = 105 (42.0 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ +T +K+FV + + E L +F KYG+I+ + D+ +G+ +GF + D
Sbjct: 95 AHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPV 154
Query: 303 KKALEEPHKNFEGHILNCQRAI 324
K + + + GH ++A+
Sbjct: 155 DKIVLQKYHAINGHHAEVRKAL 176
Score = 44 (20.5 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 406 YGNQTNVSPSVIGGYANQGGYPNQQ 430
YGNQ S GGY N G +QQ
Sbjct: 264 YGNQWEFSG---GGYGNNFGNYDQQ 285
Score = 38 (18.4 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG + G G+ + P G
Sbjct: 287 SNYGPMRNGNFGVGRNKAAPYG 308
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 115 (45.5 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 115 (45.5 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 115 (45.5 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Score = 112 (44.5 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 120 (47.3 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 69 ARPHSIDGRV 78
Score = 115 (45.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 100 (40.3 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 158 VLQKYHTINGHNAEVRKAL 176
Score = 38 (18.4 bits), Expect = 8.8e-12, Sum P(3) = 8.8e-12
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 264 YGNQGG---GYGGGYDNYGG 280
Score = 38 (18.4 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 299 SNYGPMKSGNFGGSRNMGGPYG 320
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 114 (45.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC V D + +S+G+GF+ + T A+
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 191 -EPQKKIG 197
PQK G
Sbjct: 82 ARPQKMDG 89
Score = 113 (44.8 bits), Expect = 0.00048, P = 0.00048
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F K
Sbjct: 113 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 169
Score = 110 (43.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 111 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 170
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 171 VIQKYHTGNGH--NCE 184
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 120 (47.3 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 80 ARPHSIDGRV 89
Score = 115 (45.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 111 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
Score = 100 (40.3 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 169 VLQKYHTINGHNAEVRKAL 187
Score = 38 (18.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 275 YGNQGG---GYGGGYDNYGG 291
Score = 38 (18.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 310 SNYGPMKSGNFGGSRNMGGPYG 331
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 100 (40.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 170 VLQKYHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 100 (40.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 170 VLQKYHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYG 332
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 100 (40.3 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 170 VLQKYHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYG 332
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 118 (46.6 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL + T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 69 ARPHSIDGRV 78
Score = 113 (44.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F +YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 101 (40.6 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F++YG+I+ + D+ +GK +GF + D K
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 157
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 158 VLQKYHTINGHNAEVRKAL 176
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 264 YGNQGG---GYGGGYDNYGG 280
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 299 SNYGPMKSGNFGGSRNMGGPYG 320
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 119 (46.9 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 77 ARPHTIDGRV 86
Score = 115 (45.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 108 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Score = 100 (40.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 165
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 166 VLQKYHTINGHNAEVRKAL 184
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 272 YGNQGG---GYGGGYDNYGG 288
Score = 38 (18.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 307 SNYGPMKSGNFGGSRNMGGPYG 328
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 126 (49.4 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
+KIFV GL D + E L D F Q+G IE + + DK +GK +G+GF+ F A KA+
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAV 155
Score = 117 (46.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + ++E + L +FS++G IE+ + DK TGK +GF + D+A KA+
Sbjct: 97 KKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Query: 308 EPHKNFEGHILNCQRAI 324
+ GH + ++A+
Sbjct: 157 MKFHSICGHKVEVKKAL 173
Score = 97 (39.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK- 190
K+FV GL T E L F+QYG++ DC V ++ +S+ +GF+ + + A A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 191 EPQKKIGNRM 200
P GN +
Sbjct: 67 RPHIVDGNNV 76
Score = 40 (19.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 403 QGTYGNQTNVSPSVIGGYANQGGY 426
Q YG S + GGY N GY
Sbjct: 227 QNGYGG--GYSDQMGGGYGNGNGY 248
Score = 38 (18.4 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 418 GGYANQGGYPN 428
GGY N GY N
Sbjct: 205 GGYYNDYGYQN 215
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 120 (47.3 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 81 ARPHSIDGRV 90
Score = 115 (45.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 99 (39.9 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + GH ++A+
Sbjct: 170 FLQKYHTINGHNAEVRKAL 188
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 276 YGNQGG---GYGGGYDNYGG 292
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYG 332
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 128 (50.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
DP K+F+ GL W T E L D F ++GE+++ + D V+ +S+G+GF+ F ++G
Sbjct: 18 DPC--KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVD 75
Query: 187 KALKEPQKKIGNR 199
K L + + ++ ++
Sbjct: 76 KVLAQTRHELDSK 88
Score = 125 (49.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL +T E + F Q+G+++D + DK + + +G+GF+ F+ K +
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 169 IHFHEINNKMVECKKA 184
Score = 94 (38.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + +F ++G++++ L DK T + +GF ++ D +K E
Sbjct: 109 KKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 168
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 169 IHFHEINNKMVECKKA 184
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 115 (45.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 98 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 157
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 158 VVQKYHTINGH--NCE 171
Score = 106 (42.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 69 ARPHKVDGRV 78
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 115 (45.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 114 (45.2 bits), Expect = 0.00037, P = 0.00037
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
+KIFV G+ DT+ L D F+QYG+IE + + D+ SGK +G+ F+ F + K
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDK 161
Score = 107 (42.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK +GF + ++ K
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKI 162
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 163 VIQKYHTVNGH--NCE 176
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 114 (45.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 110 (43.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 121 RQVADEDPV----H---RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
R V+ ED V H +KIFV G+ DT+ L D F++YG+IE + + D+ SGK +G
Sbjct: 109 RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 168
Query: 174 YGFILF 179
+ F+ F
Sbjct: 169 FAFVTF 174
Score = 103 (41.3 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
Score = 42 (19.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 418 GGYANQGG 425
GGY NQGG
Sbjct: 295 GGYGNQGG 302
Score = 41 (19.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 404 GTYGNQTNVSPSVIGGYAN--QGGYPNQ 429
G YG S GGY GGY NQ
Sbjct: 275 GNYGGGPGYSSR--GGYGGGGPGGYGNQ 300
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 129 (50.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGAR 186
DP K+FV GL W T ++ L + F +G + D + D V+ +S+G+GFI F+
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 187 KALKEP 192
K LK P
Sbjct: 259 KVLKVP 264
Score = 100 (40.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV V + +++ A+FS++G +EE + +D+ T + +GF ++ D + E
Sbjct: 291 KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE 350
Query: 308 EPHKNFEGHILNCQRA 323
+ + C++A
Sbjct: 351 IHFHTIKNKKVECKKA 366
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 115 (45.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 110 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 169
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 170 VVQKYHTINGH--NCE 183
Score = 106 (42.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 81 ARPHKVDGRV 90
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 135 (52.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +FV N G +++ +KL FS+YG E + I ATGK KGF Y+T +AA+KA
Sbjct: 197 TFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKV-IRDATGKSKGFGFVRYETHEAAQKA 255
Query: 306 LEEPH-KNFEGHILNCQRA 323
+ E H K+ +G +L RA
Sbjct: 256 VLELHGKSIDGKVLCVGRA 274
Score = 116 (45.9 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 119 RVRQVADED-PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI 177
R +V D +FV G D E L F +YG E K + D +GKSKG+GF+
Sbjct: 186 RAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFV 244
Query: 178 LFKTRSGARKALKE 191
++T A+KA+ E
Sbjct: 245 RYETHEAAQKAVLE 258
Score = 86 (35.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
IF+ L L F +G I CK VCD +G SKGY ++ F + + A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAI 162
Score = 72 (30.4 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
I++ N+ + +KL FS +G I + ++ G+ KGF + + + + A KA+ E
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNE 360
Score = 56 (24.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
++V L D + L F+ G + + D V+ GYG++ F+ + A AL
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 120 (47.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 191 EPQKKIGNRM 200
I R+
Sbjct: 80 ARPHSIDGRV 89
Score = 115 (45.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+K+FV G+ DT+ L D F++YG+I+ + + D+ SGK +G+GF+ F
Sbjct: 111 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
Score = 100 (40.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 168
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 169 VLQKYHTINGHNAEVRKAL 187
Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 269 SKYGEIEEGPLGIDKATGKPKG 290
S YG ++ G G + G P G
Sbjct: 270 SNYGPMKSGNFGGSRNMGGPYG 291
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 114 (45.2 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 162 VVQKYHTINGH--NCE 175
Score = 110 (43.8 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 121 RQVADEDPV----H---RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
R V+ ED V H +KIFV G+ DT+ L D F++YG+IE + + D+ SGK +G
Sbjct: 87 RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 146
Query: 174 YGFILF 179
+ F+ F
Sbjct: 147 FAFVTF 152
Score = 103 (41.3 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 73 ARPHKVDGRV 82
Score = 37 (18.1 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 406 YGNQTNVSPSVIGGYANQGGY 426
YGNQ GGY GGY
Sbjct: 240 YGNQG-------GGYGGGGGY 253
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 139 (54.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL W T +L DAF +G++ D K + D+ +G+S+G+GF+ F A A+ E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 192 PQ-KKIGNR 199
K++ R
Sbjct: 96 MDGKELNGR 104
Score = 37 (18.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 408 NQTNVSPSVIGGYANQGGY 426
N N PS Y GGY
Sbjct: 109 NPANDRPSAPRAYGGGGGY 127
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 139 (54.0 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 72 (30.4 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F+++G + E + D +P+GF ++ + +A+
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 175 HFHDIMGKKVEVKRA--EPRDSKSQ 197
Score = 38 (18.4 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 402 MQGTYGNQTNVSPSVIGGYANQG 424
MQ T T P GY+ QG
Sbjct: 212 MQSTANGWTGQPPQTWQGYSPQG 234
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 126 (49.4 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
+YT +FV N G L+ +KL A FSK+GEI + D A GKPKGF + DAA
Sbjct: 236 KYTN--VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAG 292
Query: 304 KALEEPHKNF-EGHILNCQRAI 324
+A+E+ + + EG +C+ ++
Sbjct: 293 QAVEKLNDSILEG--TDCKLSV 312
Score = 101 (40.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP R+ IF+ L +++ D F +G I CK D G SKGYGF+
Sbjct: 133 SQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVH 191
Query: 179 FKTRSGARKALKE 191
F+T A+ A+++
Sbjct: 192 FETEHSAQTAIEK 204
Score = 59 (25.8 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
+++ L D L + F G + + D S S GY ++ F+ + A +AL
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERAL 115
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 115 (45.5 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 122 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 181
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 182 VVQKYHTINGH--NCE 195
Score = 106 (42.4 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 93 ARPHKVDGRV 102
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 107 (42.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL + T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 192 PQKKIGNRM 200
K+ R+
Sbjct: 68 RPHKVDGRV 76
Score = 104 (41.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV G + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 96 TVKKIFV---GEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 152
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 153 VIQKYHTVNGH--NCE 166
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 156 (60.0 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL WDT + L D F ++GE+ DC D ++G+S+G+GF+LFK K + +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 192 PQKKIGNRM 200
+ K+ ++
Sbjct: 139 KEHKLNGKV 147
Score = 111 (44.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/81 (24%), Positives = 45/81 (55%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+E + K+F+ + + + L +FSK+GE+ + L +D TG+ +GF ++K ++
Sbjct: 73 NEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 132
Query: 303 KKALEEPHKNFEGHILNCQRA 323
K +++ G +++ +RA
Sbjct: 133 DKVMDQKEHKLNGKVIDPKRA 153
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 120 (47.3 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ G+ WDT E L + F +GE+ + + D+ +G+++G+GF++F + A + E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 192 PQKKIGNRMTACQLA 206
+ I R+ + A
Sbjct: 67 -KHNIDGRLVEAKKA 80
Score = 103 (41.3 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
RKIFV + S + +F ++G + + D T +P+GF Y + +A +K L
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 308 EPHKNFEGHILNCQRAIDGPK---PGKSR 333
+ G ++ +RA+ PK PG SR
Sbjct: 168 KTFHELNGKMVEVKRAV--PKELSPGPSR 194
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 167 (63.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR 182
V D + KIFV GL + T +TL + F+Q+G+IE+ + D+ + KS+GYGF+ K R
Sbjct: 27 VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDR 86
Query: 183 SGARKALKEPQKKIGNRMTACQLASIG 209
+ A +A K+P I R LA +G
Sbjct: 87 ASAERACKDPNPIIDGRKANVNLAYLG 113
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 167 (63.8 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 123 VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR 182
V D + KIFV GL + T +TL + F+Q+G+IE+ + D+ + KS+GYGF+ K R
Sbjct: 27 VGSRDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDR 86
Query: 183 SGARKALKEPQKKIGNRMTACQLASIG 209
+ A +A K+P I R LA +G
Sbjct: 87 ASAERACKDPNPIIDGRKANVNLAYLG 113
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 144 (55.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 26/79 (32%), Positives = 51/79 (64%)
Query: 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
+ RK+ V G+ WD ++ L D ++G++EDC + D+ +G+S+G+G++ F + A+ A
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Query: 189 LKEPQKKIGNRMTACQLAS 207
LK + +GNR+ ++A+
Sbjct: 61 LKG-EHFLGNRILEVKVAT 78
Score = 71 (30.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
+IFV+ + S + + F +YGEI + + D + + +G + + D+ + +E+
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 309 PH 310
H
Sbjct: 152 TH 153
Score = 67 (28.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/97 (20%), Positives = 38/97 (39%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + E L +F ++G I++ + D +GF + A +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 309 PHKNFEGHI-LNCQRAID--GPKPGKSRHHNAQNPHF 342
H+ + ++ +D GP G S ++ P +
Sbjct: 301 SHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEY 337
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
+KIF+ GL D + + L D F Q+G +E + + DK +GK +G+GF+ F+ A KA+
Sbjct: 101 KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAV 159
Score = 111 (44.1 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIF+ + ++E L FS++G +E+ + DK TGK +GF ++ D+A KA+
Sbjct: 101 KKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVV 160
Query: 308 EPHKNFEGHILNCQRAI 324
GH + ++A+
Sbjct: 161 LKFHMINGHKVEVKKAL 177
Score = 94 (38.1 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK- 190
K+FV GL T + L + F+QYG++ DC V ++ +S+ +GF+ + + A A+
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 191 EPQKKIGNRM 200
P GN +
Sbjct: 71 RPHILDGNNV 80
Score = 45 (20.9 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 401 PMQGTYGNQTNVSPSVIGGYAN--QGGY 426
PM+G Y ++N S GG +GGY
Sbjct: 274 PMKGNYSGRSNAPYSRGGGGGGYGRGGY 301
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 114 (45.2 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 103 (41.3 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
Score = 37 (18.1 bits), Expect = 5.2e-11, Sum P(3) = 5.2e-11
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 406 YGNQTNVSPSVIGGYANQGGY 426
YGNQ GGY GGY
Sbjct: 296 YGNQG-------GGYGGGGGY 309
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 114 (45.2 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 103 (41.3 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 172 (65.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KIFV GL W+T+ +T+ F+Q+GEI + + DK +G+SKGYGF+ FK A +A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 192 PQKKIGNRMTACQLASIG 209
I R C LA +G
Sbjct: 83 MNPVIDGRRANCNLACLG 100
Score = 125 (49.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + E + + +F ++GEI E + DK TG+ KG+ +K +AA +A +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 309 PHKNFEGHILNCQRAIDG---PKPGKSRHH 335
+ +G NC A G P+P S H
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTSPRH 112
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 153 (58.9 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 108 (43.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
Score = 40 (19.1 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 413 SPSVIGGYANQGGY 426
SP+ GY GGY
Sbjct: 175 SPAAAAGYVAAGGY 188
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 124 (48.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + + E L +F KYG+IE + D+ +GK +GF + D K +++
Sbjct: 129 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK 188
Query: 309 PHKNFEGHILNCQ-RAIDGPKPGKSRHHNAQNPHF 342
H GH NC+ + + P G R H + +F
Sbjct: 189 YH-TVNGH--NCEVKEQEMPSAGSQRGHGGGSGNF 220
Score = 110 (43.8 bits), Expect = 0.00089, P = 0.00089
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KIFV G+ DT+ L D F++YG+IE + + D+ SGK +G+ F+ F K +++
Sbjct: 129 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK 188
Score = 89 (36.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 26/93 (27%), Positives = 45/93 (48%)
Query: 111 ENHRDVASRVRQVADEDPVH----RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK 166
E R+ R R + DP RK+F+ GL ++T +L + F+++G + DC + D
Sbjct: 14 EGERE-RERGRGMEGHDPKEPEQLRKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDP 72
Query: 167 VSGKSKGYGFILFKT--RSGARKALKEPQKKIG 197
S+G+ F+ + GA + P K +G
Sbjct: 73 QRKCSRGFSFVTYSCVEEVGAVMCAR-PHKVVG 104
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 122 (48.0 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
K+F+ G+ WDT E L D F YG++ + + D+ +G+++G+GFI+F
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
Score = 98 (39.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + S + ++ +F ++G I + + D T +P+GF + + DA + L
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G ++ +RA+ PK
Sbjct: 170 KTFHELNGKLVEVKRAV--PK 188
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 113 (44.8 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D +GK +GF + D K
Sbjct: 97 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKI 156
Query: 306 LEEPHKNFEGHILNCQ 321
+++ + GH NC+
Sbjct: 157 VDQKYHIINGH--NCE 170
Score = 108 (43.1 bits), Expect = 0.00080, P = 0.00080
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 121 RQVADEDPV----H---RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
R V+ ED V H +KIFV G+ DT+ L D F++YG+IE + + D SGK +G
Sbjct: 82 RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRG 141
Query: 174 YGFILF 179
+ F+ F
Sbjct: 142 FAFVTF 147
Score = 96 (38.9 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+ + GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 68 ARPHKVDGRV 77
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV GL T E + F+Q+G IED + DK + + +G+GF+ F++ K +
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 191 EPQKKIGNRMTACQLA 206
+I N+M C+ A
Sbjct: 178 IHFHEINNKMVECKKA 193
Score = 119 (46.9 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL W T E+L D F +YG+I + + D + +S+G+GF+ F + K L +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Score = 98 (39.6 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + + + + ++F ++G IE+ L DK T + +GF +++ D K E
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 308 EPHKNFEGHILNCQRA 323
++ C++A
Sbjct: 178 IHFHEINNKMVECKKA 193
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 114 (45.2 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 161
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 162 VVQKYHTINGH--NCE 175
Score = 103 (41.3 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 73 ARPHKVDGRV 82
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 153 (58.9 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+
Sbjct: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 87 AAERACKDPNPNIDGRKANVNLAYLG 112
Score = 114 (45.2 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ N +G N A G KP
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 107 (42.7 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 101 TVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 160
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 161 VVQKYHTINGH--NCE 174
Score = 103 (41.3 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCA 72
Query: 191 EPQKKIG 197
P K G
Sbjct: 73 RPHKVDG 79
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 114 (45.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 103 (41.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 114 (45.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 103 (41.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 114 (45.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 184 VVQKYHTINGH--NCE 197
Score = 103 (41.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L + F+++G + DC + D + +S+G+GF+ + A+
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 95 ARPHKVDGRV 104
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 109 (43.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV ++ + E L +F +YG+IE + D+ +G+ +GF + D+ K
Sbjct: 96 TVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKI 155
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 156 VIQKYHTVNGH--NCE 169
Score = 102 (41.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL ++T E+L F+++G + DC + D + + +G+GF+ + T A+
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 192 PQKKIGNRM 200
K+ R+
Sbjct: 68 RPHKVDGRV 76
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 139 (54.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 49
Score = 74 (31.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 164 HFHDIMGKKVEVKRA--EPRDSKSQ 186
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 139 (54.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 49
Score = 74 (31.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 164 HFHDIMGKKVEVKRA--EPRDSKSQ 186
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 128 (50.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +FV N+G +++ +KL F +YG E + I A+GK KGF Y+T +AA+KA
Sbjct: 197 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV-IRDASGKSKGFGFVRYETHEAAQKA 255
Query: 306 LEEPH-KNFEGHILNCQRA 323
+ + H K+ +G +L RA
Sbjct: 256 VLDLHGKSIDGKVLYVGRA 274
Score = 118 (46.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 119 RVRQVADED-PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI 177
R +V D +FV +G D E L + F +YG E K + D SGKSKG+GF+
Sbjct: 186 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFV 244
Query: 178 LFKTRSGARKAL 189
++T A+KA+
Sbjct: 245 RYETHEAAQKAV 256
Score = 86 (35.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
IF+ L L F +G I CK VCD +G SKGY ++ F + + A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAI 162
Score = 76 (31.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
I++ N+ + +KL FS +G I + ++ G+ KGF + + + + A KA++E
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 310 HKNFEG 315
+ G
Sbjct: 362 NGRIVG 367
Score = 56 (24.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
++V L D + L F+ G + + D V+ GYG++ F+ + A AL
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 139 (54.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 74 (31.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 174 HFHDIMGKKVEVKRA--EPRDSKSQ 196
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 139 (54.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 74 (31.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 174 HFHDIMGKKVEVKRA--EPRDSKSQ 196
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 139 (54.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 74 (31.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ KS+
Sbjct: 174 HFHDIMGKKVEVKRA--EPRDSKSQ 196
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 109 (43.4 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ G+ WDT L + F +GE+ + +K +G+ +G+GF+ F + + L++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 192 PQKKIGNR 199
+ I NR
Sbjct: 67 -KHHIDNR 73
Score = 99 (39.9 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + L + A+F YG + + + ID+ T +P+GF + + D+ L
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ + G + +RA+ PK
Sbjct: 170 KTFHDLNGKQVEVKRAL--PK 188
Score = 44 (20.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 404 GT-YGNQTN-VSPSVIGGYANQGGYP--NQQMP 432
GT YG +N V GGY N G P N +P
Sbjct: 247 GTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVP 279
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 117 (46.2 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 108 EAAENHRDVASRV----RQVADED---P-VH---RKIFVHGLGWDTKAETLIDAFKQYGE 156
+AA +H+ V RV R V+ ED P H RKIFV G+ DT+ L D FKQYG+
Sbjct: 69 DAARSHK-VDGRVVEPKRAVSREDSQRPGAHLTVRKIFVGGIKEDTEEHHLRDYFKQYGK 127
Query: 157 IEDCKAVCDKVSGKSKGYGFILF 179
IE + + D+ SGK +G+ + F
Sbjct: 128 IEVIEIMTDRGSGKKRGFASVTF 150
Score = 106 (42.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
RK+F+ GL ++T E+L F+Q+G + DC + D + S+G+GF+ + T
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYAT 64
Score = 101 (40.6 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T RKIFV + + E L +F +YG+IE + D+ +GK +GF + D K
Sbjct: 100 TVRKIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIV 159
Query: 306 LEEPHKNFEGHILNCQ 321
+++ + GH NC+
Sbjct: 160 IQK-YYIVNGH--NCE 172
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 404 GTYGNQTNVSPSVIGGYANQGGYPNQQ 430
G +G N G ++ QGG+ Q
Sbjct: 203 GGFGGNDNFGHG--GNFSGQGGFSGSQ 227
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 119 (46.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 98 SKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEI 157
+K + + R+A E A + + + P +FV L W+ L + FK G +
Sbjct: 208 AKTEAPSKKRKAEEEEEAPAKKTKTEESDKP--STLFVGNLSWNVDDAMLAEEFKFCGTV 265
Query: 158 EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193
+ + D+ SG+SKG+G++ F T A KA E Q
Sbjct: 266 TSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQ 301
Score = 98 (39.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
+FV N+ + + + AFFS+ E++ L ++ +G+ KGF + +V+ AK A E+
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 310 H-KNFEGHILNCQRAIDGPKP 329
+ ++ G NC+ P+P
Sbjct: 404 NGQSINGR--NCRLDYSTPRP 422
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 108 (43.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 112 NHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKS 171
+H V S+ + + + + RK+F GL ++T E+L F+Q+G + DC + D + +S
Sbjct: 3 SHPAVMSKSESLKEPEQL-RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 61
Query: 172 KGYGFILF 179
+G+GF+ +
Sbjct: 62 RGFGFVTY 69
Score = 101 (40.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L + +YG+IE + D+ +GK GF + D+ K
Sbjct: 106 TVKKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKI 165
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 166 VIQKYHTVNGH--NCE 179
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 150 (57.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLG 89
Score = 105 (42.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 142 (55.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL W T ETL + F QYGE+ DC + DK + +S+G+GF+ FK + R L
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 192 PQKKIGNR 199
+ R
Sbjct: 72 KPHNLDGR 79
Score = 68 (29.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 18/88 (20%), Positives = 39/88 (44%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + +L +F+++G + E + D +P+GF ++ + +A+
Sbjct: 113 KKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVN 172
Query: 308 EPHKNFEGHILNCQRA----IDGPKPGK 331
+ G + ++A P PG+
Sbjct: 173 MHFHDIMGKKVEVKKAEPRDSKAPAPGQ 200
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 139 (54.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 71 (30.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 172
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ K++
Sbjct: 173 HFHDIMGKKVEVKRA--EPRDSKNQ 195
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 139 (54.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 71 (30.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ K++
Sbjct: 174 HFHDIMGKKVEVKRA--EPRDSKNQ 196
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 139 (54.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
K+FV GL W T ETL F QYGE+ DC + DK + +S+G+GF+ FK
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK 59
Score = 71 (30.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + +L +F K+G + E + D +P+GF ++ + +A+
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSR 333
+ G + +RA P+ K++
Sbjct: 174 HFHDIMGKKVEVKRA--EPRDSKNQ 196
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 125 (49.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +FV N G++++ +KL FS YG E + I A+GK KGF Y+T +AA+KA
Sbjct: 197 TFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKV-IRDASGKSKGFGFVRYETHEAAQKA 255
Query: 306 LEEPH-KNFEGHILNCQRA 323
+ + H K+ G +L RA
Sbjct: 256 VLDLHGKSINGKVLYVGRA 274
Score = 115 (45.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 119 RVRQVADED-PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI 177
R +V D +FV G D E L + F YG E K + D SGKSKG+GF+
Sbjct: 186 RAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFV 244
Query: 178 LFKTRSGARKAL 189
++T A+KA+
Sbjct: 245 RYETHEAAQKAV 256
Score = 86 (35.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
IF+ L L F +G I CK VCD +G SKGY ++ F + + A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAI 162
Score = 78 (32.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
I++ N+ ++ +KL FS +G I + ++ G+ KGF + + + + A KA++E
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDE 360
Score = 56 (24.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
++V L D + L F+ G + + D V+ GYG++ F+ + A AL
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 112 (44.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ L ++T E+L F+Q+G + DC + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
+K+ R+
Sbjct: 74 ARPQKVNGRV 83
Score = 98 (39.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+ E + D+ GK +GF + D+ K
Sbjct: 103 TVKKIFVGGIKEDTE-HHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKI 161
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH NC+ +
Sbjct: 162 VIQKYHTVNGH--NCETRV 178
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 106 (42.4 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T ++L F+Q+G + DC + D + +S+G+GF+ + + ++
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 93 ARPHKVDGRL 102
Score = 105 (42.0 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F ++G+IE + +D TG +GF + D+ +
Sbjct: 122 TVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRI 181
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 182 VIQKYHTVNGH--NCE 195
Score = 39 (18.8 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 404 GTYGNQTNVSPSVIGG--YANQGG 425
G YG GG Y NQGG
Sbjct: 297 GNYGGNRGYGGGGGGGHGYGNQGG 320
Score = 37 (18.1 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 401 PMQGTYGNQTNVSPSVIGGYANQGG 425
PM+G +G S GGY GG
Sbjct: 380 PMKGNFGGGGRNSGPYGGGYG--GG 402
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 126 (49.4 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
IFV L +D E L +AF QYG + D K D G SKG+GFI F+T A+KA +E
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEE 132
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
IFV N+ + + L FS+YG + + + D A G KGF ++T +AA+KA EE
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEA 133
Query: 310 HKNF-EGHILNCQRAIDGPKPG 330
+ F G +N I KPG
Sbjct: 134 NNTFWHGRRINVAPRIKASKPG 155
Score = 79 (32.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
+++ N+ E L F +++ + +D++TG P+GF +K V++A KA+E+
Sbjct: 171 LYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEK 229
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 124 (48.7 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +FV N G +++ KL FS+YG E + I ++GK KGF Y+T +AA+KA
Sbjct: 197 TFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKV-IRDSSGKSKGFGFVRYETHEAAQKA 255
Query: 306 LEEPH-KNFEGHILNCQRA 323
+ + H K+ +G +L RA
Sbjct: 256 VLDLHGKSIDGKVLYVGRA 274
Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 119 RVRQVADEDPV-HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI 177
R +V D +FV G D + L + F +YG E K + D SGKSKG+GF+
Sbjct: 186 RAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFV 244
Query: 178 LFKTRSGARKAL 189
++T A+KA+
Sbjct: 245 RYETHEAAQKAV 256
Score = 86 (35.3 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
IF+ L L F +G I CK VCD +G SKGY ++ F + + A +A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD-NG-SKGYAYVHFDSLAAANRAI 162
Score = 81 (33.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
I++ N+ ++ +KL FS +G I + ++ G+ KGF + + + + A KA++E
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEM 361
Query: 310 HKNFEG 315
+ G
Sbjct: 362 NGRIVG 367
Score = 56 (24.8 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
++V L D + L F+ G + + D V+ GYG++ F+ + A AL
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 114 (45.2 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL ++T E+L + ++Q+G++ DC + D S +S+G+GF+ F + + A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 192 PQKKIGNRM 200
I R+
Sbjct: 70 RPHSIDGRV 78
Score = 89 (36.4 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + E L +F +YG+I+ + D+ +GK +GF + D K
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKI 156
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 157 VLQKYHTKNGHNAEVRKAL 175
Score = 38 (18.4 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 406 YGNQTNVSPSVIGGYANQGG 425
YGNQ GGY N GG
Sbjct: 263 YGNQGG---GYGGGYDNYGG 279
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 106 (42.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 21/91 (23%), Positives = 46/91 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S + ++++VS V + L +F+KYG + + + +DKAT KP+GF + D+
Sbjct: 109 SNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
Query: 303 KKALEEPHKNFEGHILNCQRAIDGPKPGKSR 333
+ + + GH + ++ + + K++
Sbjct: 169 DQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQ 199
Score = 105 (42.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RKIFV GL +T + + + + Q+GEI D + D + +S+G+GF+ F ++ A+K
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 191 E 191
+
Sbjct: 83 Q 83
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 160 (61.4 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ RS
Sbjct: 4 SQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRS 63
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 64 AAERACKDPNPIIDGRKANVNLAYLG 89
Score = 113 (44.8 bits), Expect = 0.00026, P = 0.00026
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +GEIEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 120 (47.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + ++E + L FFS++G IE+ + DK TGK +GF ++ D+A KA+
Sbjct: 99 KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVV 158
Query: 308 EPHKNFEGHILNCQRAI 324
GH + ++A+
Sbjct: 159 LKFHMINGHKVEVKKAL 175
Score = 120 (47.3 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
+KIFV GL D + + L + F Q+G IE + + DK +GK +G+GF+ F+ A KA+
Sbjct: 99 KKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV 157
Score = 87 (35.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
K+FV GL T + L F+Q+G + DC V + +S+ +GF+ + T A A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAM 66
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 124 (48.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 107 REAAENHRDVASRVRQ----VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKA 162
R+A E+ + ++ V++ + E+P +FV L W+ L F+ G + +
Sbjct: 142 RKAEESKEEESAPVKKSKPAASTEEPA--TLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
Query: 163 VCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNR 199
+ ++ +GKS+GYG++ F+++S A KAL+E Q K+I R
Sbjct: 200 IMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGR 237
Score = 86 (35.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
+F+ N+ L F +YG + + T +PKGF + +VD AK ALE
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 310 HKNF-EGHILNCQRAIDGPKPGKSRHHN 336
+ + EG C+ P+ + ++N
Sbjct: 332 NGEYIEGR--PCRLDFSTPRDNTNNNNN 357
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 124 (48.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 107 REAAENHRDVASRVRQ----VADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKA 162
R+A E+ + ++ V++ + E+P +FV L W+ L F+ G + +
Sbjct: 142 RKAEESKEEESAPVKKSKPAASTEEPA--TLFVGRLSWNIDDAWLKREFEHIGGVIGARV 199
Query: 163 VCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNR 199
+ ++ +GKS+GYG++ F+++S A KAL+E Q K+I R
Sbjct: 200 IMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGR 237
Score = 86 (35.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
+F+ N+ L F +YG + + T +PKGF + +VD AK ALE
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 310 HKNF-EGHILNCQRAIDGPKPGKSRHHN 336
+ + EG C+ P+ + ++N
Sbjct: 332 NGEYIEGR--PCRLDFSTPRDNTNNNNN 357
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 116 (45.9 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+KIFV G+ + E L F QYGE+ + D+ +G+S+G+ F+ F T G + AL
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 191 EPQKKI 196
++ I
Sbjct: 89 AREQTI 94
Score = 91 (37.1 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + S+ Q L + F ++G++++ DK T + F V++ ++A KA
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Query: 308 EPHKNFEGHILNCQRAIDGPK--PG 330
+ + F + ++A+ K PG
Sbjct: 170 QTKQTFGTRECDVKKAVPQGKRFPG 194
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 126 (49.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IFV L ++TL D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEEAERAIEK 157
Score = 115 (45.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ LG D E L D F ++G K + D+ SGKSKG+GF+ F+ ARKA+ E
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 89 (36.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N+G +++ ++L FS++G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDAR 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K+ G + RA
Sbjct: 246 KAVDEMNGKDLNGKQIYVGRA 266
Score = 65 (27.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A KA+ E
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTE 362
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 125 (49.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
E RK+F+ GL +TK E+L + ++Q+G++ DC + D S +S+G+GF++F + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 186 RKALKEPQKKIGNRMTA 202
A+ I R+ A
Sbjct: 76 DAAMAARPHSIDGRVVA 92
Score = 76 (31.8 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + + L +F +YG I+ + I + +G+ F + D K
Sbjct: 110 TTKKLFVGGIKEDTTERHLRDYFERYGTIDA--IEIIRQSGRKTAFGFVTFDDHDPVDKI 167
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 168 VLQKYHTINGHHAQLEKAL 186
Score = 39 (18.8 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 404 GTYGNQ----TNVSPSVIGGYANQGG 425
G YG++ +N+S GY N GG
Sbjct: 268 GGYGDRGAGYSNLSSGFGDGYGNYGG 293
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 125 (49.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
E RK+F+ GL +TK E+L + ++Q+G++ DC + D S +S+G+GF++F + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 186 RKALKEPQKKIGNRMTA 202
A+ I R+ A
Sbjct: 76 DAAMAARPHSIDGRVVA 92
Score = 76 (31.8 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + + L +F +YG I+ + I + +G+ F + D K
Sbjct: 110 TTKKLFVGGIKEDTTERHLRDYFERYGTIDA--IEIIRQSGRKTAFGFVTFDDHDPVDKI 167
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 168 VLQKYHTINGHHAQLEKAL 186
Score = 39 (18.8 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 404 GTYGNQ----TNVSPSVIGGYANQGG 425
G YG++ +N+S GY N GG
Sbjct: 268 GGYGDRGAGYSNLSSGFGDGYGNYGG 293
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 157 (60.3 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ RS A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 DRACKDPNPIIDGRKANVNLAYLG 89
Score = 111 (44.1 bits), Expect = 0.00038, P = 0.00038
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +GEIEE + D+ TGK +G+ AA +A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 121 (47.7 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
E+ K+FV GL W+T E L F ++G+I DC + + SG+S+G+GF+ F +
Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61
Query: 186 RKALKEPQKKIGNR 199
L+ + R
Sbjct: 62 NHVLQNGPHTLDGR 75
Score = 85 (35.0 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 22/91 (24%), Positives = 43/91 (47%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+F+ + S + L FF++YG++ E + D+ K +GF ++ + + E
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 309 PHKNFEGHILNCQRAIDGPKPGKSRHHNAQN 339
+ N G + ++A P+ G S N+ N
Sbjct: 157 RYINLNGKQVEIKKA--EPRDG-SGGQNSNN 184
Score = 38 (18.4 bits), Expect = 6.1e-10, Sum P(3) = 6.1e-10
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 413 SPSVIGGYANQGGYPNQQ 430
+P+++ GY G P QQ
Sbjct: 229 APNMMPGYQGWGTSPQQQ 246
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 144 (55.7 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV GL W T +L AF +GE+ + + D+ +G+S+G+GF+ F A A+KE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 192 PQ-KKIGNRMTACQLAS 207
K++ R LA+
Sbjct: 96 MDGKELNGRQIRVNLAT 112
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 127 (49.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 111 ENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK 170
+N +D + +R A E +++ G D E L D F +YG+ K + D SGK
Sbjct: 173 KNRKDREAELRSKASE---FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGK 228
Query: 171 SKGYGFILFKTRSGARKALKE 191
SKG+GF+ F + A+KA++E
Sbjct: 229 SKGFGFVSFDSHEAAKKAVEE 249
Score = 113 (44.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
SE+T +++ N G +++ ++L FSKYG+ + D ++GK KGF + + +AA
Sbjct: 187 SEFTN--VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAA 243
Query: 303 KKALEEPH-KNFEGHILNCQRA 323
KKA+EE + ++ G ++ RA
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRA 265
Score = 88 (36.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ L +TL + F +G+I K + D G SKGY F+ F+ +S A +A++E
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 193 QKKI 196
K+
Sbjct: 158 NGKL 161
Score = 78 (32.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+++ N+ ++ +KL FS +G I + + + G+ KGF L + + + A KA+ E
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISR--VKVMQEEGQSKGFGLICFSSPEDATKAMTE 351
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 113 (44.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL ++T E+L F+Q+G + C + D + +S+G+GF++F T A+
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 192 PQKKIGNRM 200
K+ R+
Sbjct: 75 RPNKVNGRV 83
Score = 91 (37.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E + +F +YG+ E + D+ +GK +GF + D+ +
Sbjct: 103 TVKKIFVGGIKEDTEEHE--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQI 160
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 161 VIQKYHTVNGHSCEVRKAL 179
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 121 (47.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV L W + + L + F ++GE+ DC D +G+S+G+GF+L K + K L +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 192 PQKKI 196
+ ++
Sbjct: 133 KEHRL 137
Score = 79 (32.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDA-AKKAL 306
+KIFV G E + F ++GEIE L +D + K +GF +K + KK L
Sbjct: 156 KKIFV---GLNPEATEKNRDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 307 EEPHKNFEGHILNCQRAIDGPK 328
E+ G C+ + PK
Sbjct: 213 EKKFHTISGR--KCEIKVAQPK 232
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 109 (43.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
RK+F+ GL ++T E+L F+Q+G + +C + D + +S+G+GF+ + T A+
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
Score = 92 (37.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
KIFV + + E L + +YG+IE + D+ +GK +GF + D+ K +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 309 PHKNFEGHILNCQR 322
+ H NC R
Sbjct: 161 KYHTVNDH--NCVR 172
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 104 (41.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F +YG+IE + D+ +GK KGF + D+ K
Sbjct: 102 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKI 160
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 161 VIQKYHPVNGHSCEVRKAL 179
Score = 101 (40.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
K+F+ GL ++T E+L F+Q+G DC + D + +S+G GF+++ T
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYAT 64
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 155 (59.6 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 110 (43.8 bits), Expect = 0.00053, P = 0.00053
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +GEIEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 155 (59.6 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 110 (43.8 bits), Expect = 0.00053, P = 0.00053
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +GEIEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 128 (50.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
+K+FV GL D LI+ F Q+G +E + + DK SGK +G+GF+ F+ A KA
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 160
Score = 111 (44.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + ++ L+ FS++G +E+ + DK +GK +GF ++ DAA KA
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 162
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+GH + ++A+ PK
Sbjct: 163 VKFHPIQGHRVEVKKAV--PK 181
Score = 80 (33.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 121 RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
R V E+ K+F+ GL T L F+ +G + DC V + + +S+ +GF+ +
Sbjct: 2 RAVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
Query: 181 TRSGARKALK-EPQKKIGN 198
A A+ P GN
Sbjct: 62 NVEEADAAMAASPHAVDGN 80
Score = 45 (20.9 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 405 TYGNQTNVSPSVIGGYANQGGY 426
++G ++N P GGY GGY
Sbjct: 285 SWGGRSNSGP-YRGGYGGGGGY 305
Score = 39 (18.8 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 408 NQTNVSPSVIGGYANQGGY 426
+Q +S GGY + GGY
Sbjct: 210 DQNGLSKGGGGGYNSYGGY 228
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 108 (43.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+FV G+ +T E L F +YG + + +KV+GK +G+GF+ F KAL++
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 192 PQKKIG 197
+G
Sbjct: 67 THFILG 72
Score = 98 (39.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + S ++ ++F ++G + + D T +P+GF Y + D+ + ++
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 308 EPHKNFEGHILNCQRAIDGPKPG-KSRHHNAQN 339
+ +RAI PK G +S + NA N
Sbjct: 180 SNFHELSDKRVEVKRAI--PKEGIQSNNGNAVN 210
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 122 (48.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ G+ WDT E L + F +YG++ + + D+ +G+++G+GFI+F S A + + +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Score = 85 (35.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+KIFV + S + + +F ++G I + + D T +P+GF + + ++ L
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+ G ++ +RA+ PK
Sbjct: 182 KTFHELNGKMVEVKRAV--PK 200
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 153 (58.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 108 (43.1 bits), Expect = 0.00080, P = 0.00080
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 128 (50.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
+K+FV GL D LI+ F Q+G +E + + DK SGK +G+GF+ F+ A KA
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 160
Score = 111 (44.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + ++ L+ FS++G +E+ + DK +GK +GF ++ DAA KA
Sbjct: 103 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 162
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+GH + ++A+ PK
Sbjct: 163 VKFHPIQGHRVEVKKAV--PK 181
Score = 80 (33.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 121 RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFK 180
R V E+ K+F+ GL T L F+ +G + DC V + + +S+ +GF+ +
Sbjct: 2 RAVEMENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYS 61
Query: 181 TRSGARKALK-EPQKKIGN 198
A A+ P GN
Sbjct: 62 NVEEADAAMAASPHAVDGN 80
Score = 45 (20.9 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 405 TYGNQTNVSPSVIGGYANQGGY 426
++G ++N P GGY GGY
Sbjct: 282 SWGGRSNSGP-YRGGYGGGGGY 302
Score = 39 (18.8 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 408 NQTNVSPSVIGGYANQGGY 426
+Q +S GGY + GGY
Sbjct: 210 DQNGLSKGGGGGYNSYGGY 228
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 110 (43.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQDAADRAIEK 157
Score = 107 (42.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L + F +YG+ K + D +GKSKG+GF+ F+ A KA++E
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 193 Q-KKIGNRM 200
K I +M
Sbjct: 252 NGKDINGKM 260
Score = 102 (41.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L FSKYG+ + D TGK KGF ++ + A
Sbjct: 189 EFTN--VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K+ G ++ RA
Sbjct: 246 KAVEEMNGKDINGKMVFVGRA 266
Score = 76 (31.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
Score = 60 (26.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
++V L D L + F G + + D ++ +S GY ++ F+ + A +AL
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 128 (50.1 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +FV N+G +++ +KL F +YG E + I A+GK KGF Y+T +AA+KA
Sbjct: 33 TFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKV-IRDASGKSKGFGFVRYETHEAAQKA 91
Query: 306 LEEPH-KNFEGHILNCQRA 323
+ + H K+ +G +L RA
Sbjct: 92 VLDLHGKSIDGKVLYVGRA 110
Score = 118 (46.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 119 RVRQVADED-PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFI 177
R +V D +FV +G D E L + F +YG E K + D SGKSKG+GF+
Sbjct: 22 RAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFV 80
Query: 178 LFKTRSGARKAL 189
++T A+KA+
Sbjct: 81 RYETHEAAQKAV 92
Score = 76 (31.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
I++ N+ + +KL FS +G I + ++ G+ KGF + + + + A KA++E
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 197
Query: 310 HKNFEG 315
+ G
Sbjct: 198 NGRIVG 203
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 106 (42.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 127 DPVH-RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+P H RK+F+ GL + T E L F+++G I D + D + +S+G+GFI + S
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 186 RKALKEPQKKIGNRM 200
+A K KI R+
Sbjct: 86 DEAQKSRPHKIDGRV 100
Score = 100 (40.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + + + Q + +F +G I + + IDK TGK +GF + D K
Sbjct: 120 TVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKV 179
Query: 306 LEEPHKNFEGHILNCQRAIDGPK 328
+ + G +++ ++A+ PK
Sbjct: 180 VLQKQHQLNGKMVDVKKAL--PK 200
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 153 (58.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 108 (43.1 bits), Expect = 0.00081, P = 0.00081
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 128 (50.1 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
+K+FV GL D LI+ F Q+G +E + + DK SGK +G+GF+ F+ A KA
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Score = 111 (44.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + ++ L+ FS++G +E+ + DK +GK +GF ++ DAA KA
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+GH + ++A+ PK
Sbjct: 158 VKFHPIQGHRVEVKKAV--PK 176
Score = 79 (32.9 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK- 190
K+F+ GL T L F+ +G + DC V + + +S+ +GF+ + A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 191 EPQKKIGN 198
P GN
Sbjct: 68 SPHAVDGN 75
Score = 45 (20.9 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 405 TYGNQTNVSPSVIGGYANQGGY 426
++G ++N P GGY GGY
Sbjct: 280 SWGGRSNSGP-YRGGYGGGGGY 300
Score = 39 (18.8 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 408 NQTNVSPSVIGGYANQGGY 426
+Q +S GGY + GGY
Sbjct: 205 DQNGLSKGGGGGYNSYGGY 223
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 127 (49.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 111 ENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK 170
+N +D + +R A E +++ G D E L D F +YG+ K + D SGK
Sbjct: 231 KNRKDREAELRSKASE---FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGK 286
Query: 171 SKGYGFILFKTRSGARKALKE 191
SKG+GF+ F + A+KA++E
Sbjct: 287 SKGFGFVSFDSHEAAKKAVEE 307
Score = 113 (44.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
SE+T +++ N G +++ ++L FSKYG+ + D ++GK KGF + + +AA
Sbjct: 245 SEFTN--VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAA 301
Query: 303 KKALEEPH-KNFEGHILNCQRA 323
KKA+EE + ++ G ++ RA
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRA 323
Score = 88 (36.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+F+ L +TL + F +G+I K + D G SKGY F+ F+ +S A +A++E
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD-QG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 193 QKKI 196
K+
Sbjct: 216 NGKL 219
Score = 78 (32.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308
K+++ N+ ++ +KL FS +G I + + + G+ KGF L + + + A KA+ E
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISR--VKVMQEEGQSKGFGLICFSSPEDATKAMTE 409
Score = 78 (32.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 89 PILSLLEPFSKDQLVNLLREAAENHR-DVASRVRQVADEDPVHR--KIFVHGLGWDTKAE 145
P S LEP LV+ R+ ++N R S + + +R ++V L D +
Sbjct: 23 PEASTLEPGQSCDLVSPHRDCSKNSRGQTHSGKDKEMNVAAKYRMASLYVGDLHADVTED 82
Query: 146 TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189
L F G + + D+V+ +S GY ++ F + A+KAL
Sbjct: 83 LLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 126
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 153 (58.9 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
Score = 108 (43.1 bits), Expect = 0.00082, P = 0.00082
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 69 CKDPNPIIDGRKANVNLAYLGAKP 92
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 121 (47.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KIFV GL T E L +AF +G+I D V D+ SG S+G+GF+ + + A A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 192 PQ-KKIGNRMTACQLASIG 209
Q K++ R+ A G
Sbjct: 97 MQNKELDGRIIGVHPADSG 115
Score = 96 (38.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + + + L F +G+I + + +D+ +G +GF Y +++ A A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 306 LEE-PHKNFEGHILNCQRAIDG 326
++ +K +G I+ A G
Sbjct: 94 MQAMQNKELDGRIIGVHPADSG 115
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 418 GGYANQGGY 426
GG+A +GGY
Sbjct: 121 GGFARRGGY 129
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 128 (50.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
+K+FV GL D LI+ F Q+G +E + + DK SGK +G+GF+ F+ A KA
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Score = 111 (44.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + ++ L+ FS++G +E+ + DK +GK +GF ++ DAA KA
Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157
Query: 308 EPHKNFEGHILNCQRAIDGPK 328
+GH + ++A+ PK
Sbjct: 158 VKFHPIQGHRVEVKKAV--PK 176
Score = 79 (32.9 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK- 190
K+F+ GL T L F+ +G + DC V + + +S+ +GF+ + A A+
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 191 EPQKKIGN 198
P GN
Sbjct: 68 SPHAVDGN 75
Score = 45 (20.9 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 405 TYGNQTNVSPSVIGGYANQGGY 426
++G ++N P GGY GGY
Sbjct: 285 SWGGRSNSGP-YRGGYGGGGGY 305
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 110 (43.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
I+V N+ E+ + F KYG++ L D+ TGK +GF + + + A KA++E
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 310 H-KNFEGHILNCQRA 323
+ K F G L RA
Sbjct: 304 NEKEFHGQNLYVGRA 318
Score = 103 (41.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK D+ +G SKGYGF+
Sbjct: 137 SQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVH 195
Query: 179 FKTRSGARKALK 190
++T A +A+K
Sbjct: 196 YETDEAASQAIK 207
Score = 74 (31.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 147 LIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
L + F Q G + + D V+ +S GY ++ + T + KAL+E
Sbjct: 77 LFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Score = 61 (26.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285
S+Y +++ N+ E++ +KL FS++G I + D T
Sbjct: 341 SKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 119 (46.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 98 (39.6 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D + L D F +YG + + D+ +GKS+G+GF+ F+ A++A+ E
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 91 (37.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ KL FSKYG + D+ GK +GF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
+A++E + K G ++ RA
Sbjct: 246 RAVDEMNGKEMNGKLIYVGRA 266
Score = 70 (29.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + +D G+ KGF + + + A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEE 308
KA+ E
Sbjct: 347 TKAVTE 352
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 125 (49.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 108 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV 167
+A E + +S +Q +E IFV L W E L F+ G + + + ++
Sbjct: 145 DAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERG 204
Query: 168 SGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207
+ +S+GYG++ F+ +S A KA++E Q K+I R C +++
Sbjct: 205 TDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMST 245
Score = 79 (32.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+F+ N+ + + F+K+GE+ + T +PKGF + ++ AKKAL+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188
V + FV GL W T E L F Q+G++ D K + D+ SG+S+G+GF+ FK R A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 189 LKEPQ-KKIGNRM 200
++E K++ R+
Sbjct: 64 IEEMNGKELDGRV 76
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 150 (57.9 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 155 (59.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +GEIE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 24 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAA 83
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 84 ERACKDPNPIIDGRKANVNLAYLG 107
Score = 110 (43.8 bits), Expect = 0.00064, P = 0.00064
Identities = 27/84 (32%), Positives = 40/84 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +GEIEE + D+ TGK +G+ AA++A
Sbjct: 27 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 86
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ +G N A G KP
Sbjct: 87 CKDPNPIIDGRKANVNLAYLGAKP 110
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 105 (42.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIF + + E L +F +YG+IE + D+ +GK +GF + D+ K
Sbjct: 103 TVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162
Query: 306 LEEPHKNFEGHILNCQRAI 324
+ + + GH ++A+
Sbjct: 163 VIQKYHTVNGHNWEVRKAL 181
Score = 97 (39.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK 190
+K+F+ G ++T E+L FKQ G + DC + D + +S+G+GF+ + A+
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 191 EPQKKIGNRM 200
K+ R+
Sbjct: 74 ARPHKVDGRV 83
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 153 (58.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+
Sbjct: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 87 AAERACKDPNPNIDGRKANVNLAYLG 112
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ N +G N A G KP
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 153 (58.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+
Sbjct: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 87 AAERACKDPNPNIDGRKANVNLAYLG 112
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T KIFV + L +F +G+IEE + D+ TGK +G+ AA++A
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 306 LEEPHKNFEGHILNCQRAIDGPKP 329
++P+ N +G N A G KP
Sbjct: 92 CKDPNPNIDGRKANVNLAYLGAKP 115
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 105 (42.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KIFV GL +T + + F +YGEI D + D+ +G+ +G+GF+ + S K +++
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 192 PQKKIGNRM 200
IG ++
Sbjct: 103 NHIIIGKQV 111
Score = 100 (40.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 22/88 (25%), Positives = 47/88 (53%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+++ +KIFV + S ++ + FF ++GE++E + D +TG+ +GF Y++ D
Sbjct: 125 NDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184
Query: 303 KKALEEPHK-NFEGHILNCQRAIDGPKP 329
L + ++ G + ++A + KP
Sbjct: 185 DHLLAKGNRIELSGTQVEIKKA-EPKKP 211
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 153 (58.9 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 152 (58.6 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 152 (58.6 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGA 185
+D + KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+ A
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 186 RKALKEPQKKIGNRMTACQLASIG 209
+A K+P I R LA +G
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLG 89
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 156 (60.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 122 QVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
Q + D KIFV L W T A+ L F+Q+G++ D V + G+SKGYGFI F+
Sbjct: 3 QTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRD 62
Query: 182 RSGARKALKEPQKKIGNRMTACQLASIG 209
+AL+ + I R T C LAS G
Sbjct: 63 YVSTVRALQNSKPIIDGRTTNCNLASAG 90
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 113 (44.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAADKAIEK 157
Score = 100 (40.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D +GKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 252 NGKEISGKI 260
Score = 94 (38.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G I+ RA
Sbjct: 246 KAVEEMNGKEISGKIIFVGRA 266
Score = 76 (31.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
+Q KI+V ++ ++ +L +FF +YGEIEE L +D+ TG+ KGF Y T DAA++A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 306 LEE 308
+ +
Sbjct: 76 VSK 78
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KI+V L +D A+ L F QYGEIE+ K + D+ +G+SKG+ FI + T+ A++A+ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 138 (53.6 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
+Q KI+V ++ ++ +L +FF +YGEIEE L +D+ TG+ KGF Y T DAA++A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 306 LEE 308
+ +
Sbjct: 76 VSK 78
Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KI+V L +D A+ L F QYGEIE+ K + D+ +G+SKG+ FI + T+ A++A+ +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 113 (44.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAADKAIEK 157
Score = 103 (41.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 252 NGKEISGKV 260
Score = 94 (38.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D + GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G ++ RA
Sbjct: 246 KAVEEMNGKEISGKVIFVGRA 266
Score = 76 (31.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 113 (44.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAADKAIEK 157
Score = 102 (41.0 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 252 NGKEISGKV 260
Score = 94 (38.1 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D + GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G ++ RA
Sbjct: 246 KAVEEMNGKEISGKVIFVGRA 266
Score = 76 (31.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 113 (44.8 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAADKAIEK 157
Score = 100 (40.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D +GKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 252 NGKEISGKI 260
Score = 94 (38.1 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G I+ RA
Sbjct: 246 KAVEEMNGKEISGKIIFVGRA 266
Score = 76 (31.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 122 (48.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 95 EPFSKDQLVNLLREAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQY 154
E S+D+ A+E ++ Q ++E +FV L W+ + L F++Y
Sbjct: 230 ESSSEDEKKRKAEPASEERPAKITKPSQDSNETCT---VFVGRLSWNVDDQWLGQEFEEY 286
Query: 155 GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALK-EPQKKIGNRMTACQLAS 207
G I + + D SG+SKGYG++ F+T A+ A+ K+I RM L++
Sbjct: 287 GTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
Score = 81 (33.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309
+FV N+ L F G+I+ L D +G+ KGF + +D+AKK +E
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-- 425
Query: 310 HKNFEGHILN---CQRAIDGPKPG 330
GH + C+ P+ G
Sbjct: 426 ---MNGHFIAGRPCRLDFSTPRTG 446
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 100 (40.3 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + E L +F +YG+IE + D +GK +GF + D+
Sbjct: 89 TVKKIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNI 148
Query: 306 LEEPHKNFEGHILNCQ 321
+ + + GH NC+
Sbjct: 149 VIQKYHTVNGH--NCE 162
Score = 97 (39.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ GL ++T ++L F+Q+ + DC + D S +S+G+G I + T A+
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 192 PQKKIGNRMTACQLA 206
K+ R+ ++A
Sbjct: 61 RPHKVDGRVVEPKVA 75
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 111 (44.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+F+ L + L D F +G I CK VCD+ +G SKGY F+ F+T+ A KA+++
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEK 59
Score = 100 (40.3 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D +GKSKG+GF+ ++ A KA++E
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 154 NGKEISGKI 162
Score = 94 (38.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D GK KGF Y+ + A
Sbjct: 91 EFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDAN 147
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G I+ RA
Sbjct: 148 KAVEEMNGKEISGKIIFVGRA 168
Score = 76 (31.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 191 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 248
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 249 TKAVTEMNGRIVG 261
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 115 (45.5 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 16 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 73
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 74 FETQEAANKAIEK 86
Score = 101 (40.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 193 QKK 195
K
Sbjct: 181 NGK 183
Score = 90 (36.7 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D +GK KGF Y+ + A
Sbjct: 118 EFTN--VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDAN 174
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G + RA
Sbjct: 175 KAVEEMNGKEMSGKSIFVGRA 195
Score = 76 (31.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 218 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 275
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 276 TKAVTEMNGRIVG 288
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 113 (44.8 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 127 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 184
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 185 FETQEAADKAIEK 197
Score = 103 (41.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E+L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 193 Q-KKIGNRM 200
K+I ++
Sbjct: 292 NGKEISGKV 300
Score = 94 (38.1 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D + GK KGF Y+ + A
Sbjct: 229 EFTN--VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDAN 285
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G ++ RA
Sbjct: 286 KAVEEMNGKEISGKVIFVGRA 306
Score = 76 (31.8 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 329 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 386
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 387 TKAVTEMNGRIVG 399
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 119 (46.9 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 23 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 80
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 81 FETQEAAERAIEK 93
Score = 101 (40.6 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L + F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 193 QKK 195
K
Sbjct: 188 NGK 190
Score = 85 (35.0 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 125 EFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 181
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 182 KAVDEMNGKELNGKQIYVGRA 202
Score = 66 (28.3 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 225 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 282
Query: 303 KKALEE 308
KA+ E
Sbjct: 283 TKAVTE 288
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 113 (44.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAADKAIEK 157
Score = 101 (40.6 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 93 (37.8 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D + GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G ++ RA
Sbjct: 246 KAVEEMNGKEITGKVIFVGRA 266
Score = 76 (31.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 110 (43.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 88 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 145
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 146 FETQDAADRAIEK 158
Score = 96 (38.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ Q+L F KYG+ + D TGK +GF Y+ + A
Sbjct: 190 EFTN--VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDAN 246
Query: 304 KALEE 308
KA+EE
Sbjct: 247 KAVEE 251
Score = 93 (37.8 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
+++ G D + L + F +YG+ K + D +GKS+G+GF+ ++ A KA++E
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEE 251
Score = 78 (32.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + +++ G+ KGF + + + A
Sbjct: 290 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEA 347
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 348 TKAVTEMNGRIVG 360
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 150 (57.9 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ +D KIFV GL + T +L F+ +G+IE+ + D+ +GKS+GYGF+ R+
Sbjct: 27 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 86
Query: 184 GARKALKEPQKKIGNRMTACQLASIG 209
A +A K+P I R LA +G
Sbjct: 87 AAERACKDPNPIIDGRKANVNLAYLG 112
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 112 (44.5 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +KIFV + + E L +F KYG+IE + D+ +GK +GF + D K
Sbjct: 88 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 147
Query: 306 LEEPHKNFEGHILNCQRAIDGPK---PGKSRHHNAQNPHF 342
+ + H H ++A+ + G R H + +F
Sbjct: 148 VFQEHHAINRHNCEVKKAVSKQEMQSAGPQRGHGGGSGNF 187
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 121 RQVADEDPV----H---RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKG 173
R V+ ED V H +KIFV G+ DT+ L D F++YG+IE + + D+ SGK +G
Sbjct: 73 RAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 132
Query: 174 YGFILFKTRSGARKALKEPQKKIGNRMTACQL 205
+ F+ F K + + I NR C++
Sbjct: 133 FAFVTFDDHDTVDKIVFQEHHAI-NRHN-CEV 162
Score = 76 (31.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179
+ + GL ++T ++L + +++G + DC + D + S+G+GF+ +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTY 47
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 115 (45.5 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAANKAIEK 157
Score = 101 (40.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 90 (36.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D +GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G + RA
Sbjct: 246 KAVEEMNGKEMSGKSIFVGRA 266
Score = 76 (31.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 136 (52.9 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRS 183
+ DP K+F+ GL W T ++L D F ++GEI +C + D + +S+G+GF+ F +
Sbjct: 16 SQHDP--GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
Query: 184 GARKALKEPQKKIGNR 199
K L +P ++ ++
Sbjct: 74 SVDKVLGQPHHELDSK 89
Score = 100 (40.3 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S++ K+F+ + + P L +FSK+GEI E + D T + +GF + +
Sbjct: 16 SQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 75
Query: 303 KKALEEPHKNFEGHILNCQR 322
K L +PH + C+R
Sbjct: 76 DKVLGQPHHELDSK--TCRR 93
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 115 (45.5 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK +F+ L + L D F +G I CK VCD+ +G SKGY F+
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A KA+++
Sbjct: 145 FETQEAANKAIEK 157
Score = 101 (40.6 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G + E L + F Q+G+ K + D SGKSKG+GF+ ++ A KA++E
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 90 (36.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G E++ + L FS++G+ + D +GK KGF Y+ + A
Sbjct: 189 EFTN--VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDAN 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA+EE + K G + RA
Sbjct: 246 KAVEEMNGKEMSGKSIFVGRA 266
Score = 76 (31.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
S Y +++ N+ ++ +KL FS +G I + ++ G+ KGF + + + A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEEPHKNFEG 315
KA+ E + G
Sbjct: 347 TKAVTEMNGRIVG 359
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 119 (46.9 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 101 (40.6 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L + F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 85 (35.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266
Score = 66 (28.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEE 308
KA+ E
Sbjct: 347 TKAVTE 352
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 119 (46.9 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 101 (40.6 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L + F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 85 (35.0 bits), Expect = 8.5e-09, Sum P(2) = 8.5e-09
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266
Score = 66 (28.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEE 308
KA+ E
Sbjct: 347 TKAVTE 352
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 119 (46.9 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 42 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 99
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 100 FETQEAAERAIEK 112
Score = 105 (42.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L D F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 193 QKK 195
K
Sbjct: 207 NGK 209
Score = 84 (34.6 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 144 EFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 200
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 201 KAVDEMNGKELNGKQIYVGRA 221
Score = 66 (28.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 244 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 301
Query: 303 KKALEE 308
KA+ E
Sbjct: 302 TKAVTE 307
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 119 (46.9 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 105 (42.0 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L D F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 84 (34.6 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266
Score = 66 (28.3 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ K GF F Y A+
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSYMQRMAS 348
Query: 303 KKALEEP 309
+A+ P
Sbjct: 349 VRAVPNP 355
>UNIPROTKB|F1MW51 [details] [associations]
symbol:F1MW51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02008023 IPI:IPI00696055
Ensembl:ENSBTAT00000016590 Uniprot:F1MW51
Length = 274
Score = 110 (43.8 bits), Expect = 0.00077, P = 0.00077
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARK 187
PV +K+FV G+ DT+ L D F+QYG IE + + D+ SGK +G+ FILF K
Sbjct: 98 PV-KKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDK 155
Query: 188 ALKEPQKKIGNRMTACQL 205
+ + + GN + C++
Sbjct: 156 IVIQ-KYHTGNGLN-CEV 171
Score = 101 (40.6 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT 181
RK+F+ GL ++T E+L F+Q G + DC D + +S+G+GF+ + T
Sbjct: 14 RKLFIGGLSFETTDESLRSRFEQGGTLTDCVVRRDPNAKRSRGFGFVTYAT 64
Score = 94 (38.1 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALE 307
+K+FV + + E L +F +YG IE + D+ +GK +GF ++ D+ K +
Sbjct: 100 KKVFVGGIKEDTEEHHLRDYFEQYGRIEVIEIMTDQGSGK-RGFAFILFDDHDSIDKIVI 158
Query: 308 EPHKNFEGHILNCQ 321
+ K G+ LNC+
Sbjct: 159 Q--KYHTGNGLNCE 170
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
KIFV L W E L + F Q+G I+DC V D+V+ +SKG+GF+ F+++ + A+
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64
Query: 192 PQKKIGNRM 200
+ G ++
Sbjct: 65 DNEINGRKL 73
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 102 (41.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/89 (23%), Positives = 42/89 (47%)
Query: 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKA 305
T +K+FV + +++ L +F KYG+I + D +GK +GF + D K
Sbjct: 110 TVKKLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKI 169
Query: 306 LEEPHKNFEGHILNCQRAIDGPKPGKSRH 334
+ + + GH ++A+ + + +H
Sbjct: 170 VLQKNHTINGHRAEVRKALSRQERQEGQH 198
Score = 96 (38.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKE 191
K+F+ L +T E+L + ++Q+G + DC + D S KS+ +GFI F + + A+
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 192 PQKKIGNRM 200
I +M
Sbjct: 82 RPHFIDGKM 90
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 119 (46.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 105 (42.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L D F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266
Score = 66 (28.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEE 308
KA+ E
Sbjct: 347 TKAVTE 352
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 119 (46.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 124 ADEDPVHRK-----IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFIL 178
+ DP RK IF+ L + L D F +G I CK VCD+ +G SKGYGF+
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVH 144
Query: 179 FKTRSGARKALKE 191
F+T+ A +A+++
Sbjct: 145 FETQEAAERAIEK 157
Score = 105 (42.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192
+++ G D E L D F ++G K + D+ SGKSKG+GF+ F+ A+KA+ E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 193 QKK 195
K
Sbjct: 252 NGK 254
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303
E+T +++ N G +++ ++L F K+G + D++ GK KGF ++ + A+
Sbjct: 189 EFTN--VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQ 245
Query: 304 KALEEPH-KNFEGHILNCQRA 323
KA++E + K G + RA
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266
Score = 66 (28.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAA 302
+ Y ++V N+ ++ ++L FS +G I + ++ G+ KGF + + + A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Query: 303 KKALEE 308
KA+ E
Sbjct: 347 TKAVTE 352
WARNING: HSPs involving 437 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 453 277 0.00080 115 3 11 22 0.40 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 687
No. of states in DFA: 607 (65 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.16u 0.08s 21.24t Elapsed: 00:00:01
Total cpu time: 21.18u 0.08s 21.26t Elapsed: 00:00:01
Start: Tue May 21 04:34:34 2013 End: Tue May 21 04:34:35 2013
WARNINGS ISSUED: 2