Query 012923
Match_columns 453
No_of_seqs 426 out of 4075
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.2E-37 6.9E-42 289.3 25.5 173 125-329 102-278 (346)
2 KOG0117 Heterogeneous nuclear 100.0 1.1E-34 2.5E-39 263.2 27.0 198 128-333 81-338 (506)
3 KOG0148 Apoptosis-promoting RN 100.0 1.3E-35 2.8E-40 252.5 18.9 184 126-331 58-243 (321)
4 TIGR01645 half-pint poly-U bin 100.0 1.1E-32 2.3E-37 271.5 29.4 181 127-328 104-286 (612)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.8E-31 1E-35 269.2 22.1 185 127-327 175-365 (562)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 4.1E-30 8.9E-35 253.1 27.0 192 128-328 56-309 (578)
7 KOG0144 RNA-binding protein CU 100.0 3.7E-31 8.1E-36 239.2 17.7 170 126-327 30-207 (510)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-30 4.4E-35 250.3 23.4 202 127-328 86-351 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.7E-30 1.7E-34 246.2 25.3 166 130-327 3-172 (352)
10 TIGR01622 SF-CC1 splicing fact 100.0 3E-30 6.6E-35 257.6 21.7 182 125-326 84-266 (457)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1E-28 2.2E-33 252.1 19.6 163 132-325 2-166 (562)
12 KOG0145 RNA-binding protein EL 100.0 3.4E-28 7.4E-33 206.0 15.4 205 122-326 119-358 (360)
13 KOG0127 Nucleolar protein fibr 100.0 5.8E-28 1.3E-32 224.6 16.4 192 131-329 6-199 (678)
14 KOG0127 Nucleolar protein fibr 100.0 1.4E-27 3E-32 222.0 18.6 196 130-326 117-378 (678)
15 KOG0145 RNA-binding protein EL 100.0 1.3E-27 2.8E-32 202.5 16.2 168 127-326 38-209 (360)
16 KOG4205 RNA-binding protein mu 100.0 4.6E-27 9.9E-32 213.5 20.3 175 129-329 5-179 (311)
17 KOG0131 Splicing factor 3b, su 100.0 7E-28 1.5E-32 193.8 12.1 168 130-328 9-179 (203)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.6E-26 5.7E-31 232.5 21.9 194 125-327 170-376 (509)
19 KOG0124 Polypyrimidine tract-b 99.9 3.5E-27 7.7E-32 208.9 13.5 181 129-330 112-294 (544)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.4E-25 5.3E-30 221.5 21.7 192 127-325 272-479 (481)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.8E-24 4E-29 215.2 27.9 167 130-326 2-174 (481)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.4E-25 5.1E-30 225.5 21.5 190 130-324 295-500 (509)
23 KOG0109 RNA-binding protein LA 99.9 5.3E-25 1.2E-29 189.8 11.1 148 132-329 4-153 (346)
24 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-23 3.4E-28 209.3 22.2 194 128-325 184-447 (457)
25 KOG0146 RNA-binding protein ET 99.9 2E-24 4.4E-29 183.8 8.7 198 129-327 18-366 (371)
26 KOG0110 RNA-binding protein (R 99.9 7.7E-24 1.7E-28 203.8 12.8 174 131-327 516-694 (725)
27 KOG0144 RNA-binding protein CU 99.9 2.5E-23 5.5E-28 188.7 13.3 200 128-328 122-506 (510)
28 KOG0147 Transcriptional coacti 99.9 2.8E-24 6E-29 201.4 6.0 191 121-329 170-361 (549)
29 KOG0123 Polyadenylate-binding 99.9 1.1E-22 2.4E-27 192.1 15.9 151 131-327 2-154 (369)
30 KOG0148 Apoptosis-promoting RN 99.9 8.9E-23 1.9E-27 174.4 10.8 139 128-327 4-143 (321)
31 KOG4211 Splicing factor hnRNP- 99.9 8.3E-21 1.8E-25 175.9 23.3 172 128-324 8-180 (510)
32 PLN03134 glycine-rich RNA-bind 99.9 2.6E-20 5.6E-25 153.2 15.4 84 245-328 32-116 (144)
33 KOG0123 Polyadenylate-binding 99.8 2.3E-20 5E-25 176.4 14.3 176 122-325 68-245 (369)
34 TIGR01645 half-pint poly-U bin 99.8 2.4E-19 5.1E-24 177.4 20.5 80 129-208 203-283 (612)
35 KOG0105 Alternative splicing f 99.8 7.5E-18 1.6E-22 136.2 17.8 180 128-323 4-187 (241)
36 KOG4206 Spliceosomal protein s 99.8 5.5E-18 1.2E-22 142.9 16.5 186 130-323 9-219 (221)
37 KOG0147 Transcriptional coacti 99.8 8E-19 1.7E-23 165.0 11.0 189 131-324 279-526 (549)
38 KOG4212 RNA-binding protein hn 99.8 8.1E-18 1.8E-22 153.2 16.1 195 127-323 41-291 (608)
39 PLN03134 glycine-rich RNA-bind 99.8 9.5E-18 2.1E-22 138.0 11.4 85 127-211 31-116 (144)
40 KOG1548 Transcription elongati 99.7 4.2E-17 9.2E-22 144.7 15.5 194 127-325 131-351 (382)
41 KOG4211 Splicing factor hnRNP- 99.7 4.2E-16 9E-21 145.0 20.2 192 129-323 102-355 (510)
42 KOG0149 Predicted RNA-binding 99.7 7.4E-17 1.6E-21 136.2 13.3 82 246-327 11-92 (247)
43 KOG0149 Predicted RNA-binding 99.7 3.2E-17 6.8E-22 138.4 8.0 83 129-211 11-93 (247)
44 KOG1457 RNA binding protein (c 99.7 4.1E-16 8.8E-21 130.1 12.6 177 130-310 34-269 (284)
45 TIGR01659 sex-lethal sex-letha 99.7 5.9E-16 1.3E-20 145.9 15.4 83 243-325 103-186 (346)
46 KOG0110 RNA-binding protein (R 99.7 3.2E-16 6.9E-21 151.7 12.9 193 126-324 381-596 (725)
47 KOG0106 Alternative splicing f 99.6 3.6E-16 7.8E-21 133.6 8.2 164 131-322 2-167 (216)
48 KOG0124 Polypyrimidine tract-b 99.6 7.2E-15 1.6E-19 131.2 15.2 196 128-323 208-532 (544)
49 KOG0122 Translation initiation 99.6 1E-15 2.2E-20 129.8 9.3 81 246-326 188-269 (270)
50 KOG0121 Nuclear cap-binding pr 99.6 9.1E-16 2E-20 116.6 7.9 79 245-323 34-113 (153)
51 KOG1365 RNA-binding protein Fu 99.6 1.6E-15 3.5E-20 136.2 8.0 193 130-326 161-362 (508)
52 KOG0122 Translation initiation 99.6 3.2E-15 7E-20 126.8 9.2 81 129-209 188-269 (270)
53 COG0724 RNA-binding proteins ( 99.6 1.2E-14 2.7E-19 136.0 13.8 169 130-308 115-286 (306)
54 KOG0121 Nuclear cap-binding pr 99.6 2.9E-15 6.4E-20 113.9 6.9 80 128-207 34-114 (153)
55 PF00076 RRM_1: RNA recognitio 99.6 5.8E-15 1.3E-19 106.7 8.2 69 133-202 1-70 (70)
56 PF00076 RRM_1: RNA recognitio 99.6 5E-15 1.1E-19 107.1 7.7 69 250-319 1-70 (70)
57 KOG4207 Predicted splicing fac 99.6 6.9E-15 1.5E-19 121.4 8.7 82 245-326 11-93 (256)
58 KOG4212 RNA-binding protein hn 99.6 1.1E-13 2.3E-18 126.6 16.0 74 245-323 534-608 (608)
59 KOG1190 Polypyrimidine tract-b 99.6 1.4E-13 2.9E-18 125.1 16.4 187 130-325 297-490 (492)
60 KOG0120 Splicing factor U2AF, 99.6 2.2E-14 4.9E-19 137.3 12.0 187 130-324 289-490 (500)
61 PLN03120 nucleic acid binding 99.6 2.4E-14 5.2E-19 125.8 10.6 77 130-209 4-80 (260)
62 PF14259 RRM_6: RNA recognitio 99.6 1.6E-14 3.5E-19 104.3 7.8 69 133-202 1-70 (70)
63 KOG0130 RNA-binding protein RB 99.5 2E-14 4.3E-19 110.3 8.2 92 242-333 67-159 (170)
64 KOG0126 Predicted RNA-binding 99.5 1.1E-15 2.3E-20 123.5 0.9 87 125-211 30-117 (219)
65 KOG0113 U1 small nuclear ribon 99.5 4.1E-14 9E-19 123.4 10.7 83 244-326 98-181 (335)
66 PF14259 RRM_6: RNA recognitio 99.5 2.6E-14 5.7E-19 103.2 7.6 69 250-319 1-70 (70)
67 TIGR01648 hnRNP-R-Q heterogene 99.5 4.2E-14 9.1E-19 140.3 11.6 134 130-275 233-369 (578)
68 PLN03120 nucleic acid binding 99.5 5.6E-14 1.2E-18 123.5 10.6 76 247-326 4-80 (260)
69 KOG0125 Ataxin 2-binding prote 99.5 2.4E-14 5.3E-19 126.4 8.2 88 241-330 90-178 (376)
70 KOG0126 Predicted RNA-binding 99.5 1.3E-15 2.8E-20 123.1 0.2 83 247-329 35-118 (219)
71 KOG0113 U1 small nuclear ribon 99.5 3E-14 6.6E-19 124.3 8.6 83 128-210 99-182 (335)
72 KOG0107 Alternative splicing f 99.5 4.6E-14 9.9E-19 113.7 7.7 78 129-211 9-87 (195)
73 PLN03213 repressor of silencin 99.5 2.8E-14 6E-19 132.3 7.1 74 130-207 10-86 (759)
74 KOG0107 Alternative splicing f 99.5 1.3E-13 2.8E-18 111.2 10.0 77 247-328 10-87 (195)
75 KOG0111 Cyclophilin-type pepti 99.5 3.6E-14 7.8E-19 118.2 6.2 81 246-326 9-90 (298)
76 KOG0114 Predicted RNA-binding 99.5 1.6E-13 3.5E-18 100.4 8.5 77 129-208 17-94 (124)
77 KOG0114 Predicted RNA-binding 99.5 3E-13 6.5E-18 99.0 8.8 78 245-325 16-94 (124)
78 PLN03121 nucleic acid binding 99.5 2.9E-13 6.2E-18 116.9 10.2 77 129-208 4-80 (243)
79 KOG0105 Alternative splicing f 99.5 3.5E-13 7.7E-18 109.3 9.9 77 246-325 5-82 (241)
80 KOG0125 Ataxin 2-binding prote 99.5 1.5E-13 3.2E-18 121.5 8.2 80 128-209 94-174 (376)
81 KOG4207 Predicted splicing fac 99.5 1.1E-13 2.3E-18 114.4 6.0 82 130-211 13-95 (256)
82 KOG0129 Predicted RNA-binding 99.4 1.6E-12 3.5E-17 122.2 14.4 190 124-324 253-452 (520)
83 PLN03213 repressor of silencin 99.4 2.3E-13 5.1E-18 126.3 8.7 76 246-325 9-87 (759)
84 KOG4210 Nuclear localization s 99.4 1.7E-13 3.8E-18 125.0 7.3 178 129-328 87-266 (285)
85 PLN03121 nucleic acid binding 99.4 9.3E-13 2E-17 113.8 10.1 76 247-325 5-80 (243)
86 KOG1190 Polypyrimidine tract-b 99.4 1.5E-12 3.3E-17 118.4 11.8 187 128-325 26-227 (492)
87 KOG0108 mRNA cleavage and poly 99.4 1.9E-13 4.1E-18 130.4 6.0 81 131-211 19-100 (435)
88 KOG0111 Cyclophilin-type pepti 99.4 2.9E-13 6.3E-18 112.8 5.7 84 128-211 8-92 (298)
89 KOG0132 RNA polymerase II C-te 99.4 3.3E-11 7.2E-16 118.2 20.2 109 128-269 419-528 (894)
90 smart00362 RRM_2 RNA recogniti 99.4 1.3E-12 2.9E-17 94.5 8.1 71 249-321 1-72 (72)
91 KOG0130 RNA-binding protein RB 99.4 7.3E-13 1.6E-17 101.8 6.8 82 130-211 72-154 (170)
92 KOG1456 Heterogeneous nuclear 99.4 6.8E-11 1.5E-15 106.5 20.2 163 128-326 29-199 (494)
93 smart00362 RRM_2 RNA recogniti 99.4 1.9E-12 4.2E-17 93.6 8.7 70 132-203 1-71 (72)
94 KOG0131 Splicing factor 3b, su 99.4 5.9E-13 1.3E-17 108.1 5.8 78 247-324 9-87 (203)
95 KOG0117 Heterogeneous nuclear 99.4 1.9E-12 4.1E-17 119.2 9.5 82 245-326 81-164 (506)
96 smart00360 RRM RNA recognition 99.4 2.2E-12 4.8E-17 93.0 7.5 70 252-321 1-71 (71)
97 KOG0120 Splicing factor U2AF, 99.3 2.9E-12 6.3E-17 122.9 9.5 187 126-327 171-370 (500)
98 KOG0108 mRNA cleavage and poly 99.3 2E-12 4.3E-17 123.5 7.8 81 248-328 19-100 (435)
99 smart00360 RRM RNA recognition 99.3 5.5E-12 1.2E-16 90.8 8.1 69 135-203 1-70 (71)
100 KOG0128 RNA-binding protein SA 99.3 3.3E-13 7.2E-18 133.6 0.7 149 128-325 665-814 (881)
101 cd00590 RRM RRM (RNA recogniti 99.3 1.4E-11 2.9E-16 89.6 8.9 73 249-322 1-74 (74)
102 cd00590 RRM RRM (RNA recogniti 99.3 2.2E-11 4.7E-16 88.5 9.3 73 132-205 1-74 (74)
103 KOG0116 RasGAP SH3 binding pro 99.3 2.7E-11 5.8E-16 115.1 12.2 82 248-329 289-370 (419)
104 COG0724 RNA-binding proteins ( 99.3 1.4E-11 3.1E-16 115.1 9.3 79 247-325 115-194 (306)
105 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3E-16 88.4 7.0 60 261-320 2-69 (70)
106 KOG0132 RNA polymerase II C-te 99.2 1.1E-09 2.4E-14 107.7 21.0 80 243-328 417-497 (894)
107 PF13893 RRM_5: RNA recognitio 99.2 3.1E-11 6.8E-16 82.6 6.6 55 264-323 1-56 (56)
108 KOG4454 RNA binding protein (R 99.2 5.2E-12 1.1E-16 105.5 1.3 133 129-309 8-145 (267)
109 KOG0415 Predicted peptidyl pro 99.2 3.4E-11 7.3E-16 107.6 6.4 88 241-328 233-321 (479)
110 smart00361 RRM_1 RNA recogniti 99.2 9.1E-11 2E-15 84.2 7.6 60 144-203 2-69 (70)
111 KOG4205 RNA-binding protein mu 99.2 7.7E-11 1.7E-15 107.9 8.8 85 129-213 96-180 (311)
112 KOG1365 RNA-binding protein Fu 99.2 3.2E-11 6.8E-16 108.9 6.1 182 125-323 55-240 (508)
113 KOG0146 RNA-binding protein ET 99.2 3.3E-11 7.2E-16 103.6 5.4 87 124-210 279-366 (371)
114 KOG0415 Predicted peptidyl pro 99.1 1.6E-10 3.5E-15 103.3 8.7 84 125-208 234-318 (479)
115 KOG0109 RNA-binding protein LA 99.1 5.5E-11 1.2E-15 103.7 5.6 71 249-327 4-75 (346)
116 KOG0226 RNA-binding proteins [ 99.1 6.4E-11 1.4E-15 101.4 5.6 172 127-325 93-269 (290)
117 KOG4849 mRNA cleavage factor I 99.1 2.4E-09 5.3E-14 95.7 15.2 76 248-323 81-159 (498)
118 PF13893 RRM_5: RNA recognitio 99.1 3.6E-10 7.7E-15 77.3 6.9 55 147-206 1-56 (56)
119 KOG4208 Nucleolar RNA-binding 99.1 2.3E-10 5E-15 95.4 7.0 81 129-209 48-130 (214)
120 KOG1456 Heterogeneous nuclear 99.0 1.3E-08 2.7E-13 92.1 16.5 193 128-327 285-490 (494)
121 KOG4208 Nucleolar RNA-binding 99.0 7.1E-10 1.5E-14 92.5 7.3 81 245-325 47-129 (214)
122 KOG0112 Large RNA-binding prot 99.0 1.9E-10 4.2E-15 114.8 3.6 163 125-328 367-533 (975)
123 KOG4206 Spliceosomal protein s 99.0 1E-09 2.2E-14 93.2 7.3 78 248-328 10-92 (221)
124 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 97.9 7.5 79 241-325 222-302 (377)
125 KOG4307 RNA binding protein RB 99.0 2E-09 4.4E-14 104.5 8.9 195 128-324 309-512 (944)
126 KOG0153 Predicted RNA-binding 98.9 2.5E-09 5.4E-14 96.0 7.8 79 124-208 222-302 (377)
127 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.6E-09 5.7E-14 101.4 7.9 84 127-210 402-486 (940)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.7E-09 8E-14 100.4 7.5 83 244-326 402-485 (940)
129 KOG4660 Protein Mei2, essentia 98.8 2.8E-08 6.1E-13 94.9 10.3 176 125-323 70-247 (549)
130 KOG4676 Splicing factor, argin 98.8 4E-09 8.7E-14 95.8 4.5 179 131-313 8-213 (479)
131 KOG0533 RRM motif-containing p 98.7 4E-08 8.7E-13 86.5 8.8 84 126-210 79-163 (243)
132 KOG0116 RasGAP SH3 binding pro 98.7 2E-08 4.3E-13 95.7 7.2 78 130-207 288-365 (419)
133 KOG0533 RRM motif-containing p 98.7 4.3E-08 9.2E-13 86.4 7.9 80 246-326 82-162 (243)
134 KOG4209 Splicing factor RNPS1, 98.7 5.6E-08 1.2E-12 86.0 8.4 83 243-326 97-180 (231)
135 PF04059 RRM_2: RNA recognitio 98.7 1.5E-07 3.3E-12 70.7 8.5 77 131-207 2-85 (97)
136 KOG1457 RNA binding protein (c 98.6 1.9E-07 4E-12 78.8 9.0 89 246-334 33-126 (284)
137 KOG4307 RNA binding protein RB 98.6 9.6E-07 2.1E-11 86.4 14.7 79 128-207 432-512 (944)
138 KOG0226 RNA-binding proteins [ 98.6 4.5E-08 9.9E-13 84.2 4.9 82 126-207 186-268 (290)
139 KOG1548 Transcription elongati 98.6 1.1E-07 2.4E-12 85.5 7.3 80 246-326 133-221 (382)
140 KOG4209 Splicing factor RNPS1, 98.5 1.2E-07 2.6E-12 83.9 6.0 85 124-208 95-179 (231)
141 KOG2193 IGF-II mRNA-binding pr 98.5 1.8E-08 4E-13 92.5 0.2 150 132-325 3-156 (584)
142 KOG4849 mRNA cleavage factor I 98.5 7.4E-06 1.6E-10 73.8 15.7 77 128-204 78-157 (498)
143 KOG4660 Protein Mei2, essentia 98.5 1E-07 2.3E-12 91.1 4.3 71 244-319 72-143 (549)
144 KOG1995 Conserved Zn-finger pr 98.5 5.3E-07 1.1E-11 82.0 7.7 87 244-330 63-158 (351)
145 KOG0151 Predicted splicing reg 98.4 3.7E-07 8E-12 89.4 6.6 85 127-211 171-259 (877)
146 PF04059 RRM_2: RNA recognitio 98.4 1.9E-06 4.2E-11 64.8 8.5 78 248-325 2-86 (97)
147 KOG4454 RNA binding protein (R 98.3 2E-07 4.3E-12 78.5 1.5 76 247-324 9-85 (267)
148 KOG0106 Alternative splicing f 98.3 7.6E-07 1.7E-11 76.7 4.0 70 248-325 2-72 (216)
149 KOG0128 RNA-binding protein SA 98.3 5.7E-08 1.2E-12 97.2 -3.6 164 130-315 571-735 (881)
150 KOG0151 Predicted splicing reg 98.2 2.4E-06 5.1E-11 84.0 6.5 84 244-327 171-258 (877)
151 KOG1995 Conserved Zn-finger pr 98.2 1.8E-06 3.9E-11 78.7 4.3 83 128-210 64-155 (351)
152 PF08777 RRM_3: RNA binding mo 98.1 6.7E-06 1.4E-10 63.5 5.3 69 248-322 2-76 (105)
153 KOG3152 TBP-binding protein, a 98.1 2.1E-06 4.7E-11 74.2 2.7 71 131-201 75-158 (278)
154 PF11608 Limkain-b1: Limkain b 98.1 1.8E-05 4E-10 56.4 6.6 67 131-207 3-75 (90)
155 PF11608 Limkain-b1: Limkain b 98.0 1.9E-05 4E-10 56.4 5.9 67 248-324 3-75 (90)
156 KOG4210 Nuclear localization s 97.9 1E-05 2.2E-10 74.4 3.2 81 131-211 185-266 (285)
157 PF08777 RRM_3: RNA binding mo 97.8 4E-05 8.7E-10 59.2 5.2 57 131-193 2-58 (105)
158 KOG1855 Predicted RNA-binding 97.8 3.3E-05 7.2E-10 71.8 5.2 66 245-310 229-307 (484)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.1E-05 1.8E-09 49.5 5.2 52 248-306 2-53 (53)
160 KOG0115 RNA-binding protein p5 97.6 0.00039 8.5E-09 60.6 8.7 87 184-310 6-93 (275)
161 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 47.8 5.3 52 131-189 2-53 (53)
162 COG5175 MOT2 Transcriptional r 97.4 0.00031 6.7E-09 63.4 6.3 81 246-326 113-203 (480)
163 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00083 1.8E-08 51.0 7.4 77 247-324 6-90 (100)
164 KOG2314 Translation initiation 97.4 0.00044 9.5E-09 66.8 6.7 76 247-323 58-141 (698)
165 KOG1855 Predicted RNA-binding 97.3 0.00022 4.8E-09 66.5 4.3 70 125-194 226-308 (484)
166 COG5175 MOT2 Transcriptional r 97.2 0.0013 2.8E-08 59.5 7.3 76 132-207 116-201 (480)
167 KOG0129 Predicted RNA-binding 97.2 0.0013 2.8E-08 63.2 7.7 79 128-206 368-451 (520)
168 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.003 6.5E-08 48.0 7.8 76 130-206 6-89 (100)
169 KOG3152 TBP-binding protein, a 97.1 0.00025 5.5E-09 61.7 2.1 69 249-317 76-157 (278)
170 KOG4676 Splicing factor, argin 97.1 0.00096 2.1E-08 61.6 5.6 82 248-329 8-92 (479)
171 KOG2416 Acinus (induces apopto 97.1 0.0019 4E-08 63.0 7.6 80 240-325 437-521 (718)
172 KOG2314 Translation initiation 97.0 0.0026 5.6E-08 61.6 8.0 74 131-205 59-140 (698)
173 KOG1996 mRNA splicing factor [ 97.0 0.0017 3.6E-08 57.7 6.1 77 248-324 282-365 (378)
174 KOG2416 Acinus (induces apopto 97.0 0.0011 2.4E-08 64.5 5.2 76 126-207 440-520 (718)
175 KOG1924 RhoA GTPase effector D 96.9 0.003 6.4E-08 63.6 7.8 7 184-190 211-217 (1102)
176 PF08952 DUF1866: Domain of un 96.9 0.0064 1.4E-07 49.1 8.2 74 246-327 26-108 (146)
177 KOG2202 U2 snRNP splicing fact 96.7 0.00072 1.6E-08 59.1 1.8 62 262-324 83-146 (260)
178 KOG1999 RNA polymerase II tran 96.7 0.0089 1.9E-07 62.0 9.6 31 171-201 209-239 (1024)
179 PF10309 DUF2414: Protein of u 96.7 0.013 2.9E-07 39.9 7.4 54 248-309 6-62 (62)
180 PF15023 DUF4523: Protein of u 96.6 0.012 2.6E-07 46.8 7.6 76 125-207 81-160 (166)
181 PF08675 RNA_bind: RNA binding 96.6 0.0068 1.5E-07 43.5 5.5 54 132-193 10-63 (87)
182 PF15023 DUF4523: Protein of u 96.5 0.014 2.9E-07 46.5 7.3 71 246-323 85-159 (166)
183 PF08952 DUF1866: Domain of un 96.5 0.013 2.8E-07 47.4 7.4 76 126-209 23-107 (146)
184 PF10309 DUF2414: Protein of u 96.4 0.022 4.8E-07 38.8 6.8 53 131-192 6-62 (62)
185 KOG2202 U2 snRNP splicing fact 96.3 0.0017 3.6E-08 56.9 1.5 62 145-207 83-146 (260)
186 KOG0115 RNA-binding protein p5 96.2 0.0033 7.2E-08 55.0 2.6 75 131-206 32-111 (275)
187 PF10446 DUF2457: Protein of u 96.1 0.00091 2E-08 63.2 -1.2 7 248-254 192-198 (458)
188 PF08675 RNA_bind: RNA binding 95.9 0.024 5.3E-07 40.8 5.5 54 248-310 10-63 (87)
189 KOG1996 mRNA splicing factor [ 95.9 0.023 5E-07 50.7 6.3 65 144-208 300-366 (378)
190 PF10446 DUF2457: Protein of u 95.5 0.003 6.6E-08 59.8 -0.7 6 254-259 188-193 (458)
191 KOG2193 IGF-II mRNA-binding pr 95.4 0.015 3.4E-07 54.4 3.6 74 248-327 2-77 (584)
192 PF10567 Nab6_mRNP_bdg: RNA-re 94.8 0.76 1.6E-05 41.6 12.3 179 125-310 10-212 (309)
193 KOG4483 Uncharacterized conser 94.8 0.063 1.4E-06 50.1 5.7 65 129-200 390-455 (528)
194 KOG2591 c-Mpl binding protein, 94.8 0.076 1.6E-06 51.8 6.5 95 104-205 148-248 (684)
195 KOG2236 Uncharacterized conser 94.7 0.81 1.8E-05 44.1 12.9 13 174-186 261-273 (483)
196 KOG2135 Proteins containing th 94.5 0.03 6.6E-07 53.4 3.1 81 127-213 369-450 (526)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.055 1.2E-06 46.2 4.2 67 129-195 6-78 (176)
198 KOG0112 Large RNA-binding prot 94.2 0.016 3.4E-07 59.6 0.5 82 241-323 366-448 (975)
199 PF07292 NID: Nmi/IFP 35 domai 94.1 0.1 2.2E-06 38.5 4.5 72 175-269 1-74 (88)
200 KOG2253 U1 snRNP complex, subu 94.0 0.043 9.3E-07 54.7 3.0 70 245-323 38-108 (668)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.06 1.3E-06 46.0 3.5 79 247-325 7-97 (176)
202 KOG4285 Mitotic phosphoprotein 93.7 0.24 5.2E-06 44.7 6.8 74 247-327 197-271 (350)
203 KOG2591 c-Mpl binding protein, 93.7 0.092 2E-06 51.2 4.5 69 248-323 176-249 (684)
204 KOG2068 MOT2 transcription fac 93.4 0.028 6E-07 51.6 0.6 79 248-326 78-163 (327)
205 COG5180 PBP1 Protein interacti 93.0 0.22 4.8E-06 47.6 5.8 13 178-190 329-341 (654)
206 KOG1999 RNA polymerase II tran 92.7 0.55 1.2E-05 49.4 8.6 22 289-310 210-231 (1024)
207 KOG2135 Proteins containing th 92.6 0.079 1.7E-06 50.7 2.4 74 248-327 373-447 (526)
208 PF04147 Nop14: Nop14-like fam 92.4 0.065 1.4E-06 57.5 1.8 13 143-155 427-439 (840)
209 KOG4285 Mitotic phosphoprotein 92.4 0.46 1E-05 43.0 6.7 71 130-207 197-268 (350)
210 KOG3973 Uncharacterized conser 92.3 1.6 3.5E-05 40.3 10.1 13 133-145 152-164 (465)
211 PF07576 BRAP2: BRCA1-associat 91.7 1.5 3.2E-05 34.2 8.0 62 132-195 15-77 (110)
212 KOG2068 MOT2 transcription fac 91.2 0.21 4.5E-06 46.0 3.4 77 131-207 78-161 (327)
213 KOG2253 U1 snRNP complex, subu 91.2 0.13 2.8E-06 51.5 2.2 160 125-308 35-195 (668)
214 PF04847 Calcipressin: Calcipr 90.8 0.76 1.7E-05 39.4 6.2 60 260-325 8-70 (184)
215 KOG4574 RNA-binding protein (c 90.1 0.19 4.1E-06 51.7 2.3 74 249-328 300-376 (1007)
216 KOG0804 Cytoplasmic Zn-finger 90.0 0.94 2E-05 43.4 6.6 64 130-195 74-138 (493)
217 PF07576 BRAP2: BRCA1-associat 89.5 3.1 6.7E-05 32.4 8.1 65 248-314 14-80 (110)
218 KOG2318 Uncharacterized conser 88.8 2.3 4.9E-05 42.3 8.4 77 129-205 173-304 (650)
219 KOG4574 RNA-binding protein (c 88.3 0.42 9.1E-06 49.3 3.3 82 128-215 296-380 (1007)
220 PF04847 Calcipressin: Calcipr 85.9 2.9 6.3E-05 35.9 6.6 59 143-207 8-69 (184)
221 PF03880 DbpA: DbpA RNA bindin 85.5 2.7 5.8E-05 30.1 5.4 58 257-323 11-74 (74)
222 COG5180 PBP1 Protein interacti 85.5 6.3 0.00014 38.1 9.1 21 367-387 537-557 (654)
223 KOG2141 Protein involved in hi 85.4 0.4 8.7E-06 48.7 1.3 25 291-315 623-648 (822)
224 KOG4594 Sequence-specific sing 85.2 17 0.00037 32.9 11.0 8 444-451 241-248 (354)
225 PF11767 SET_assoc: Histone ly 83.9 5.1 0.00011 27.9 5.9 53 258-319 11-64 (66)
226 KOG0804 Cytoplasmic Zn-finger 83.0 4.4 9.5E-05 39.1 6.9 67 247-315 74-142 (493)
227 PF11767 SET_assoc: Histone ly 80.6 6.7 0.00015 27.3 5.5 47 140-195 10-56 (66)
228 KOG0262 RNA polymerase I, larg 80.2 5.2 0.00011 43.6 7.0 23 130-153 1442-1464(1640)
229 PF03880 DbpA: DbpA RNA bindin 80.1 6.8 0.00015 27.9 5.7 58 140-206 11-74 (74)
230 KOG2375 Protein interacting wi 79.2 8.2 0.00018 40.2 7.9 15 380-394 578-592 (756)
231 PF14111 DUF4283: Domain of un 79.2 2.1 4.6E-05 35.4 3.3 117 133-280 18-138 (153)
232 KOG4019 Calcineurin-mediated s 77.0 4.4 9.6E-05 34.1 4.3 72 248-325 11-89 (193)
233 KOG0526 Nucleosome-binding fac 75.7 1 2.2E-05 44.2 0.4 6 143-148 550-555 (615)
234 KOG2891 Surface glycoprotein [ 75.3 4.4 9.6E-05 36.3 4.2 35 246-280 148-194 (445)
235 KOG2891 Surface glycoprotein [ 75.0 2.3 4.9E-05 38.0 2.3 34 130-163 149-194 (445)
236 PF05285 SDA1: SDA1; InterPro 74.1 2.1 4.5E-05 40.6 2.0 6 143-148 191-196 (324)
237 KOG2318 Uncharacterized conser 71.1 21 0.00045 35.9 7.9 79 245-323 172-305 (650)
238 PF03468 XS: XS domain; Inter 70.7 4.7 0.0001 31.7 3.0 56 132-190 10-75 (116)
239 KOG3130 Uncharacterized conser 69.8 3.6 7.8E-05 38.9 2.5 21 134-154 354-374 (514)
240 PF07530 PRE_C2HC: Associated 69.7 13 0.00028 26.1 4.7 60 262-324 2-63 (68)
241 PTZ00415 transmission-blocking 69.6 2.1 4.6E-05 48.0 1.1 7 157-163 286-292 (2849)
242 KOG4213 RNA-binding protein La 69.5 5.9 0.00013 33.2 3.4 60 130-194 111-172 (205)
243 KOG4410 5-formyltetrahydrofola 65.4 16 0.00036 33.0 5.5 47 247-299 330-377 (396)
244 PF07423 DUF1510: Protein of u 64.9 3.7 8.1E-05 36.1 1.5 14 140-153 148-161 (217)
245 TIGR02542 B_forsyth_147 Bacter 64.5 42 0.0009 26.0 6.8 46 255-300 82-130 (145)
246 KOG2044 5'-3' exonuclease HKE1 64.0 81 0.0017 33.3 10.7 22 171-192 630-651 (931)
247 PF09073 BUD22: BUD22; InterP 63.7 3.7 8E-05 40.7 1.4 6 255-260 405-410 (432)
248 smart00596 PRE_C2HC PRE_C2HC d 62.8 16 0.00035 25.5 3.9 60 262-324 2-63 (69)
249 KOG4483 Uncharacterized conser 62.5 21 0.00046 34.0 5.9 66 245-317 389-455 (528)
250 PF15513 DUF4651: Domain of un 61.9 20 0.00044 24.4 4.2 18 145-162 9-26 (62)
251 PF07530 PRE_C2HC: Associated 60.8 29 0.00064 24.3 5.1 60 145-207 2-63 (68)
252 KOG4410 5-formyltetrahydrofola 60.1 12 0.00027 33.7 3.9 50 128-182 328-377 (396)
253 KOG2192 PolyC-binding hnRNP-K 59.8 60 0.0013 29.2 7.9 8 147-154 70-77 (390)
254 TIGR00927 2A1904 K+-dependent 59.1 3.6 7.8E-05 43.9 0.4 8 132-139 906-913 (1096)
255 COG5193 LHP1 La protein, small 58.7 4.6 9.9E-05 38.4 1.0 66 127-192 171-246 (438)
256 PRK11634 ATP-dependent RNA hel 58.3 46 0.001 34.9 8.4 67 249-324 488-561 (629)
257 PF10567 Nab6_mRNP_bdg: RNA-re 57.7 18 0.00039 33.1 4.5 83 242-324 10-106 (309)
258 PF03468 XS: XS domain; Inter 57.1 14 0.00031 29.0 3.4 58 248-308 9-76 (116)
259 KOG0299 U3 snoRNP-associated p 57.0 24 0.00052 34.3 5.4 12 265-276 280-291 (479)
260 smart00596 PRE_C2HC PRE_C2HC d 54.8 33 0.00072 24.0 4.4 60 145-207 2-63 (69)
261 KOG4264 Nucleo-cytoplasmic pro 52.9 6.9 0.00015 38.5 1.2 8 291-298 443-450 (694)
262 KOG0699 Serine/threonine prote 52.7 7.6 0.00016 36.5 1.4 8 259-266 450-457 (542)
263 KOG2295 C2H2 Zn-finger protein 52.4 3.4 7.5E-05 40.8 -0.9 64 130-193 231-294 (648)
264 KOG2236 Uncharacterized conser 52.2 68 0.0015 31.5 7.6 8 293-300 318-325 (483)
265 KOG0699 Serine/threonine prote 51.6 9.9 0.00021 35.7 1.9 6 132-137 343-348 (542)
266 KOG4008 rRNA processing protei 51.2 14 0.00031 32.5 2.7 36 125-160 35-70 (261)
267 KOG4365 Uncharacterized conser 49.3 3 6.5E-05 39.9 -1.7 75 131-206 4-79 (572)
268 KOG2044 5'-3' exonuclease HKE1 49.0 2.4E+02 0.0051 30.1 11.1 21 248-270 668-688 (931)
269 KOG0262 RNA polymerase I, larg 46.9 25 0.00054 38.8 4.2 9 299-307 1531-1539(1640)
270 PRK14548 50S ribosomal protein 46.8 62 0.0013 23.8 5.1 58 132-192 22-81 (84)
271 COG5193 LHP1 La protein, small 46.5 9.7 0.00021 36.3 1.1 62 247-308 174-245 (438)
272 KOG4434 Molecular chaperone SE 46.2 10 0.00023 35.6 1.2 9 131-139 399-407 (520)
273 KOG4365 Uncharacterized conser 46.1 2.8 6.1E-05 40.1 -2.4 77 248-325 4-81 (572)
274 TIGR03636 L23_arch archaeal ri 45.9 66 0.0014 23.2 5.0 58 132-192 15-74 (77)
275 COG4547 CobT Cobalamin biosynt 43.9 10 0.00022 36.9 0.8 18 131-148 317-334 (620)
276 KOG0772 Uncharacterized conser 43.8 18 0.0004 35.7 2.5 16 127-142 176-191 (641)
277 KOG0650 WD40 repeat nucleolar 43.7 9.7 0.00021 38.3 0.7 15 131-145 119-133 (733)
278 PF05764 YL1: YL1 nuclear prot 43.3 9 0.00019 34.6 0.4 12 255-266 181-192 (240)
279 KOG1980 Uncharacterized conser 42.6 15 0.00033 37.3 1.8 17 174-190 526-543 (754)
280 KOG2295 C2H2 Zn-finger protein 41.4 3.7 7.9E-05 40.6 -2.5 65 246-310 230-294 (648)
281 COG4907 Predicted membrane pro 40.7 61 0.0013 31.8 5.3 12 299-310 525-536 (595)
282 KOG4008 rRNA processing protei 40.3 28 0.00061 30.7 2.8 32 246-277 39-70 (261)
283 KOG4434 Molecular chaperone SE 40.1 12 0.00026 35.2 0.6 7 174-180 455-461 (520)
284 PRK14959 DNA polymerase III su 39.6 1.6E+02 0.0034 30.8 8.6 7 132-138 122-128 (624)
285 KOG1980 Uncharacterized conser 39.1 11 0.00023 38.3 0.2 8 132-139 528-535 (754)
286 PF03896 TRAP_alpha: Transloco 38.5 11 0.00023 34.9 0.1 7 131-137 85-91 (285)
287 KOG4264 Nucleo-cytoplasmic pro 35.6 38 0.00082 33.6 3.2 6 150-155 229-234 (694)
288 PF07292 NID: Nmi/IFP 35 domai 34.4 64 0.0014 23.9 3.6 32 292-323 1-34 (88)
289 PF02714 DUF221: Domain of unk 34.3 65 0.0014 30.5 4.7 57 175-270 1-57 (325)
290 PF00403 HMA: Heavy-metal-asso 34.1 1.4E+02 0.0031 19.8 6.1 55 249-309 1-59 (62)
291 KOG1295 Nonsense-mediated deca 32.7 50 0.0011 31.5 3.4 66 130-195 7-75 (376)
292 PF05793 TFIIF_alpha: Transcri 32.7 15 0.00032 37.5 0.0 24 257-281 462-485 (527)
293 COG0445 GidA Flavin-dependent 32.4 1.4E+02 0.003 30.5 6.6 47 243-297 297-343 (621)
294 PF05470 eIF-3c_N: Eukaryotic 30.6 30 0.00064 35.8 1.8 14 180-193 277-290 (595)
295 KOG2147 Nucleolar protein invo 30.6 22 0.00048 36.8 0.9 13 143-155 397-409 (823)
296 KOG0772 Uncharacterized conser 30.4 41 0.0009 33.4 2.6 13 288-300 477-489 (641)
297 PF12782 Innate_immun: Inverte 30.0 1.9E+02 0.0041 25.0 6.1 9 301-309 12-20 (311)
298 KOG0338 ATP-dependent RNA heli 29.1 21 0.00045 35.6 0.3 12 176-187 256-267 (691)
299 KOG3424 40S ribosomal protein 28.4 1.7E+02 0.0036 22.9 5.0 48 140-188 33-85 (132)
300 PF14026 DUF4242: Protein of u 28.0 2.3E+02 0.005 20.3 7.9 58 133-192 3-67 (77)
301 PF14893 PNMA: PNMA 27.8 54 0.0012 31.1 2.8 23 130-152 18-40 (331)
302 PF03439 Spt5-NGN: Early trans 27.2 1.2E+02 0.0026 22.2 4.0 34 273-311 33-66 (84)
303 KOG4019 Calcineurin-mediated s 27.1 63 0.0014 27.4 2.7 71 131-207 11-88 (193)
304 PF08156 NOP5NT: NOP5NT (NUC12 27.1 24 0.00052 24.6 0.3 38 262-309 27-64 (67)
305 PF06613 KorB_C: KorB C-termin 27.0 86 0.0019 21.2 2.8 22 159-181 19-40 (60)
306 PF08206 OB_RNB: Ribonuclease 26.7 14 0.0003 24.9 -0.9 37 171-207 7-44 (58)
307 CHL00100 ilvH acetohydroxyacid 26.4 1.6E+02 0.0034 25.1 5.1 61 144-205 57-117 (174)
308 PF11823 DUF3343: Protein of u 26.0 79 0.0017 22.3 2.9 27 291-317 3-30 (73)
309 PF05470 eIF-3c_N: Eukaryotic 24.9 58 0.0013 33.7 2.7 19 174-192 274-292 (595)
310 PRK14548 50S ribosomal protein 24.7 2.6E+02 0.0056 20.5 5.3 57 250-309 23-81 (84)
311 PRK11901 hypothetical protein; 24.2 2E+02 0.0043 27.1 5.7 60 247-311 245-306 (327)
312 COG4547 CobT Cobalamin biosynt 24.2 43 0.00093 32.8 1.5 12 194-205 424-435 (620)
313 PF15407 Spo7_2_N: Sporulation 24.2 29 0.00062 24.2 0.3 24 129-152 26-49 (67)
314 KOG4213 RNA-binding protein La 23.5 1.1E+02 0.0023 26.0 3.4 68 248-320 112-181 (205)
315 KOG2192 PolyC-binding hnRNP-K 22.9 4.3E+02 0.0094 24.0 7.2 6 250-255 171-176 (390)
316 KOG3871 Cell adhesion complex 22.6 37 0.0008 32.0 0.7 6 248-253 340-345 (449)
317 cd00874 RNA_Cyclase_Class_II R 22.4 6.8E+02 0.015 23.8 10.0 48 249-297 188-238 (326)
318 KOG3034 Isoamyl acetate-hydrol 22.0 2.8E+02 0.0062 25.6 6.1 22 174-195 124-147 (308)
319 PF05793 TFIIF_alpha: Transcri 21.8 30 0.00066 35.3 0.0 13 257-269 476-488 (527)
320 PHA03378 EBNA-3B; Provisional 21.7 9.7E+02 0.021 25.3 11.6 7 318-324 685-691 (991)
321 PF14026 DUF4242: Protein of u 21.5 3.1E+02 0.0068 19.6 7.3 58 250-309 3-67 (77)
322 PRK05901 RNA polymerase sigma 21.4 56 0.0012 33.1 1.8 9 172-180 320-328 (509)
323 COG5593 Nucleic-acid-binding p 21.3 54 0.0012 32.8 1.6 21 131-151 799-819 (821)
324 TIGR03636 L23_arch archaeal ri 20.9 3.3E+02 0.0072 19.6 5.4 57 250-309 16-74 (77)
325 PF11411 DNA_ligase_IV: DNA li 20.7 77 0.0017 19.0 1.5 16 140-155 19-34 (36)
326 PF06991 Prp19_bind: Splicing 20.6 40 0.00086 31.1 0.5 12 268-279 224-235 (276)
327 COG0150 PurM Phosphoribosylami 20.6 33 0.00073 32.3 0.0 47 144-194 275-321 (345)
328 KOG0156 Cytochrome P450 CYP2 s 20.6 1.6E+02 0.0034 29.9 4.8 60 133-201 35-97 (489)
329 PF04026 SpoVG: SpoVG; InterP 20.5 1.4E+02 0.003 22.0 3.2 26 273-298 2-27 (84)
330 KOG1295 Nonsense-mediated deca 20.3 1.2E+02 0.0027 29.0 3.6 61 248-308 8-71 (376)
331 PF04026 SpoVG: SpoVG; InterP 20.3 1.6E+02 0.0035 21.6 3.5 26 156-181 2-27 (84)
332 PF09707 Cas_Cas2CT1978: CRISP 20.2 2E+02 0.0042 21.3 3.9 46 131-179 26-71 (86)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.2e-37 Score=289.33 Aligned_cols=173 Identities=24% Similarity=0.403 Sum_probs=153.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|+.||.|++|+|++|+.+++++|||||+|.+.++|.+||+.|+ ..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 445567899999999999999999999999999999999999999999999999999999999999888 5589999999
Q ss_pred EecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC
Q 012923 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~ 283 (453)
.++..... ....++|||+|||+.+|+++|+++|++||.|+.|+|++++
T Consensus 182 ~~a~p~~~--------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred eccccccc--------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 98753211 0123589999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEccCCCCC
Q 012923 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPKP 329 (453)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a~~~~~~ 329 (453)
.+++++|||||+|.+.++|.+||+.|| ..|.+ ++|.|.++....+.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999999999999999999999999 66655 78999999765443
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=263.19 Aligned_cols=198 Identities=19% Similarity=0.318 Sum_probs=153.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc--cCCeEeEEEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~--~~gr~~~v~~ 205 (453)
+..|-|||+.||.++.|++|..||++.|+|.++||++|+.+|.+||||||+|.+.+.|+.||+.+|.. -.|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 66889999999999999999999999999999999999999999999999999999999999999843 4789998888
Q ss_pred cccCCCCCCCcCcccccccc--------------------------c------------------cccc----ccc----
Q 012923 206 ASIGPATTPAVASTATHQHQ--------------------------H------------------QHQH----QHQ---- 233 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~--------------------------~------------------~~~~----~~~---- 233 (453)
+....+...-.....+...+ . +... +..
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 75443221000000000000 0 0000 000
Q ss_pred -----cccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHc
Q 012923 234 -----HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308 (453)
Q Consensus 234 -----~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~ 308 (453)
..............+.|||+||+.++|++.|+++|+.||.|++|+.++| ||||+|.+.++|.+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 0000011223444589999999999999999999999999999998866 999999999999999999
Q ss_pred CC-CccCCeEEEEEEccCCCCCCCCC
Q 012923 309 PH-KNFEGHILNCQRAIDGPKPGKSR 333 (453)
Q Consensus 309 ~~-~~l~g~~l~v~~a~~~~~~~~~~ 333 (453)
+| ..|+|..|.|.+|++..+....|
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred hcCceecCceEEEEecCChhhhccch
Confidence 99 99999999999998776555443
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-35 Score=252.51 Aligned_cols=184 Identities=26% Similarity=0.444 Sum_probs=158.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~ 204 (453)
....+.-|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..|++ .|.+|.|+..
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 334466799999999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred ecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCC
Q 012923 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~ 284 (453)
|+..++...... ...............++|||+|++..+|+++||+.|++||.|..|||+++
T Consensus 138 WATRKp~e~n~~----------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-- 199 (321)
T KOG0148|consen 138 WATRKPSEMNGK----------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-- 199 (321)
T ss_pred ccccCccccCCC----------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc--
Confidence 998776221110 01111222344556789999999999999999999999999999999998
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCCCC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPGK 331 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~~~ 331 (453)
+||+||.|.++++|.+||..+| ..|.|+.|+|.|.+.......
T Consensus 200 ----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 200 ----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred ----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 8999999999999999999999 999999999999987654433
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-32 Score=271.50 Aligned_cols=181 Identities=20% Similarity=0.415 Sum_probs=155.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
....++|||+|||+++++++|+++|.+||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.+++ .|.||.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34568999999999999999999999999999999999999999999999999999999999998884 58999999985
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~ 285 (453)
....+...... ..........++|||+||++.+++++|+++|+.||.|.+|+|++++.+
T Consensus 184 p~~~p~a~~~~---------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t 242 (612)
T TIGR01645 184 PSNMPQAQPII---------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG 242 (612)
T ss_pred ccccccccccc---------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC
Confidence 43221110000 000011123469999999999999999999999999999999999999
Q ss_pred CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 286 GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
+++||||||+|.+.++|.+||..|| ..|+|+.|+|.++...+.
T Consensus 243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 9999999999999999999999999 899999999999986553
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=4.8e-31 Score=269.20 Aligned_cols=185 Identities=23% Similarity=0.400 Sum_probs=152.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccC----CeEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG----NRMT 201 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~----gr~~ 201 (453)
....++|||+|||.++|+++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|.+|++.+++ .|. ++.|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999987 789999999999999999999999885 477 8888
Q ss_pred EEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeec
Q 012923 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (453)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 281 (453)
.|.++............ ...............++|||+||++.+|+++|+++|+.||.|.+|+|++
T Consensus 254 ~v~~a~~k~er~~~~~~--------------~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 254 YVGRAQKRAEREAELRR--------------KFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred EeecccChhhhHHHHHh--------------hHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 88876543222100000 0000000111233456899999999999999999999999999999999
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
+ .+|+++|||||+|.+.++|.+||..+| ..|+|++|.|.++..+.
T Consensus 320 d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 320 D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 8 689999999999999999999999999 89999999999997653
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=4.1e-30 Score=253.09 Aligned_cols=192 Identities=19% Similarity=0.307 Sum_probs=141.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-cc-CCeEeEEEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI-GNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~-~gr~~~v~~ 205 (453)
...++|||+|||+++++++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|++||+.|+. .| .++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 5999999999999999999999999984 34 467766654
Q ss_pred cccCCCC---------C---------CC---cC--cc---cccccccc------------------ccc-------ccc-
Q 012923 206 ASIGPAT---------T---------PA---VA--ST---ATHQHQHQ------------------HQH-------QHQ- 233 (453)
Q Consensus 206 ~~~~~~~---------~---------~~---~~--~~---~~~~~~~~------------------~~~-------~~~- 233 (453)
+...... . .. .. .. ........ ... ...
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 4211100 0 00 00 00 00000000 000 000
Q ss_pred -----cccccccccccccccEEEEecCCCCccHHHHHHHHhcc--CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHH
Q 012923 234 -----HQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (453)
Q Consensus 234 -----~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (453)
..............++|||+||++.+|+++|+++|+.| |.|++|+++ ++||||+|.+.++|.+||
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 00000001122335789999999999999999999999 999999875 459999999999999999
Q ss_pred HcCC-CccCCeEEEEEEccCCCC
Q 012923 307 EEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 307 ~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
..|| ..|+|+.|+|.|+.+...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 9999 899999999999976543
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=239.22 Aligned_cols=170 Identities=24% Similarity=0.364 Sum_probs=147.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC--CccCCe--Ee
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ--KKIGNR--MT 201 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~--~~~~gr--~~ 201 (453)
.+.+.-+|||+-||..|+|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..++ .+|.|- .|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34556689999999999999999999999999999999999999999999999999999999999988 346665 45
Q ss_pred EEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeec
Q 012923 202 ACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (453)
Q Consensus 202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 281 (453)
.|+++....... ...++|||+-|+..+||.+|+++|++||.|++|.|+|
T Consensus 110 qvk~Ad~E~er~-------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 110 QVKYADGERERI-------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred eecccchhhhcc-------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 555554332211 1235899999999999999999999999999999999
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHcCC--CccCC--eEEEEEEccCCC
Q 012923 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEG--HILNCQRAIDGP 327 (453)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~l~g--~~l~v~~a~~~~ 327 (453)
|. .+.+||||||+|.+.+.|..||+.|| .++.| .+|.|+||....
T Consensus 159 d~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 159 DP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred cc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 85 79999999999999999999999999 56655 789999997653
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2e-30 Score=250.28 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=153.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCC--eEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN--RMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~g--r~~~v 203 (453)
....++|||+|||..+++++|+.+|.+||.|..++|+.+..++.++|||||+|.+.++|..||+.|++. +.+ +.|.|
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 345678999999999999999999999999999999999888999999999999999999999999854 544 67788
Q ss_pred EecccCCCCCCCcCcc------------c------------cccc---ccc----------------ccccc----ccc-
Q 012923 204 QLASIGPATTPAVAST------------A------------THQH---QHQ----------------HQHQH----QHQ- 235 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~------------~------------~~~~---~~~----------------~~~~~----~~~- 235 (453)
.++............. . +... ... ..... ...
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 8775332110000000 0 0000 000 00000 000
Q ss_pred ------------cccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHH
Q 012923 236 ------------HQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAK 303 (453)
Q Consensus 236 ------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~ 303 (453)
...........+.+|||+|||+.+++++|+++|++||.|.+|+|++|+.|+.+||||||+|.+.++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 00000011222347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 304 KALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 304 ~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
+||..|| ..|+||.|+|.|+..+..
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999 899999999999987653
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=7.7e-30 Score=246.23 Aligned_cols=166 Identities=25% Similarity=0.408 Sum_probs=148.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|.+||+.+++ .|.|+.|.|.++..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999998884 59999999998753
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
... ....++|||+|||..+++++|+.+|+.||.|..++++++..++.+
T Consensus 83 ~~~--------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 83 SSD--------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred ccc--------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 211 112358999999999999999999999999999999999888999
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEccCCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGP 327 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a~~~~ 327 (453)
+|||||+|.+.++|..||..|| ..+.| ++|.|.++....
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999999999999999999999 66666 678888886443
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3e-30 Score=257.55 Aligned_cols=182 Identities=25% Similarity=0.380 Sum_probs=155.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
..+...++|||+|||+.+|+++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|.+||...+..|.|+.|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999977788999999998
Q ss_pred ecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCC
Q 012923 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~ 284 (453)
+............. .........++|||+|||+.+|+++|+++|+.||.|..|.|+++..
T Consensus 164 ~~~~~~~~~~~~~~--------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 164 SSQAEKNRAAKAAT--------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred ecchhhhhhhhccc--------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 76432211100000 0000112257999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
+|+++|||||+|.+.++|.+||..|| ..|.|++|.|.|+...
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999999999 8999999999998743
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1e-28 Score=252.14 Aligned_cols=163 Identities=25% Similarity=0.444 Sum_probs=146.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecccCC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGP 210 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~~~~ 210 (453)
+|||+|||+++|+++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|.+||+.++.. |.|+.|+|.|+...+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999855 999999999875332
Q ss_pred CCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCce
Q 012923 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (453)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg 290 (453)
... .....+|||+|||.++++++|+++|+.||.|..|+|+++. +|+++|
T Consensus 82 ~~~------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg 130 (562)
T TIGR01628 82 SLR------------------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRG 130 (562)
T ss_pred ccc------------------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCccc
Confidence 211 1123479999999999999999999999999999999874 788999
Q ss_pred EEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
||||+|.+.++|.+||..+| ..++++.|.|.....
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 99999999999999999999 889999999976543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=205.96 Aligned_cols=205 Identities=21% Similarity=0.285 Sum_probs=160.3
Q ss_pred cccCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCcc---CC
Q 012923 122 QVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI---GN 198 (453)
Q Consensus 122 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~---~g 198 (453)
+...+......|||.+||..+|..+|..+|++||.|..-+|+.|..+|.+||.+||.|....+|+.||..+|+.. +-
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 334555666789999999999999999999999999999999999999999999999999999999999999653 56
Q ss_pred eEeEEEecccCCCCCCCcCccc-------------cccccccc------ccccc------------cccccccccccccc
Q 012923 199 RMTACQLASIGPATTPAVASTA-------------THQHQHQH------QHQHQ------------HQHQQHHQQSEYTQ 247 (453)
Q Consensus 199 r~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~------~~~~~------------~~~~~~~~~~~~~~ 247 (453)
..|.|+++.............. ....++.. ++... .......+......
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 7899998864332211110000 00000000 00000 00000112334446
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
.+|||-||.+++++.-|+++|.+||.|..|+|++|..|.++|||+||...+-++|..||..|| ..|.+|.|.|.+...+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999999999999999999 8999999999998654
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.8e-28 Score=224.56 Aligned_cols=192 Identities=22% Similarity=0.351 Sum_probs=155.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
.||||++||+.++.++|.++|+.+|+|..|.++.++.++.+|||+||+|+-.++++.|++..+ ..+.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999999988 5699999999998766
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCc
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~k 289 (453)
...................+ .............+|+|+||||.|...+|+.+|+.||.|..|.|++... |+-.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q------~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklc 158 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQ------KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLC 158 (678)
T ss_pred ccchhcccccchhhhccccc------CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCcc
Confidence 55432111110000000000 0000011122257999999999999999999999999999999998765 4445
Q ss_pred eEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCC
Q 012923 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~ 329 (453)
|||||+|....+|..||+.+| ..|+||+|-|.||.++...
T Consensus 159 GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 159 GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 999999999999999999999 9999999999999877554
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=222.05 Aligned_cols=196 Identities=23% Similarity=0.368 Sum_probs=152.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.-+|.|+||||.|...+|+.+|+.||.|.+|.|.+.+ .|+-.|||||+|....+|..||+.+| ..|.||+|.|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 4589999999999999999999999999999999877 55555999999999999999999999 669999999999976
Q ss_pred CCCCCCCcCcc---------------------c----------ccccc--cc----------c-----ccccc-----cc
Q 012923 209 GPATTPAVAST---------------------A----------THQHQ--HQ----------H-----QHQHQ-----HQ 235 (453)
Q Consensus 209 ~~~~~~~~~~~---------------------~----------~~~~~--~~----------~-----~~~~~-----~~ 235 (453)
+.......... . ..... .. . ..... ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 65432211000 0 00000 00 0 00000 00
Q ss_pred c---ccc--cccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 236 H---QQH--HQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 236 ~---~~~--~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
. ... .........+|||+|||+++|++.|.+.|++||.|.++.|+.++.|+.++|.|||.|.+..+|..||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 000 01222334899999999999999999999999999999999999999999999999999999999999872
Q ss_pred -------CccCCeEEEEEEccCC
Q 012923 311 -------KNFEGHILNCQRAIDG 326 (453)
Q Consensus 311 -------~~l~g~~l~v~~a~~~ 326 (453)
..|.||.|.|..|..+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 3579999999999865
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=202.45 Aligned_cols=168 Identities=24% Similarity=0.404 Sum_probs=151.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
+...+.|.|--||.++|+++|+.+|...|+|++|++++|+.+|.+.||+||.|-++++|++|+..+|+ .|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999995 49999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~ 285 (453)
+..... .+....|||.+||..+|..+|.++|++||.|..-+|+.|..|
T Consensus 118 ARPSs~--------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt 165 (360)
T KOG0145|consen 118 ARPSSD--------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT 165 (360)
T ss_pred ccCChh--------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 864322 233458999999999999999999999999999999999999
Q ss_pred CCCceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEccCC
Q 012923 286 GKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDG 326 (453)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a~~~ 326 (453)
|.+||.+||.|+...+|+.||..|| ..--| .+|.|+++...
T Consensus 166 g~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 166 GLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999999999999999999999 44433 68999998644
No 16
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.95 E-value=4.6e-27 Score=213.47 Aligned_cols=175 Identities=27% Similarity=0.540 Sum_probs=159.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
+.++|||++|++++|++.|+++|.+||+|.+|.+++|+.+++++||+||+|.+.+.+.++|....+.|.|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
+........ ....++|||++||..+++++|++.|.+||.|..+.++.|..+.++
T Consensus 85 r~~~~~~~~--------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 85 REDQTKVGR--------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred ccccccccc--------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 655433211 114569999999999999999999999999999999999999999
Q ss_pred ceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccCCCCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~~~~~ 329 (453)
+||+||.|.+.+++.+++...-+.|+++.+.|..|.++...
T Consensus 139 rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccceeeEeccccccceecccceeeecCceeeEeeccchhhc
Confidence 99999999999999999988779999999999999876543
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=7e-28 Score=193.82 Aligned_cols=168 Identities=25% Similarity=0.359 Sum_probs=151.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
..||||+||+..++++-|.++|-+.|+|.+++|.+|+.+...+|||||+|.+.++|+-|++.++ -+|.||+|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 4699999999999999999999999999999999999999999999999999999999999999 459999999998862
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCccee-eeeccCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGK 287 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~d~~~g~ 287 (453)
..... ..+.+|||+||.+.+++..|..+|+.||.|... .|+++..||.
T Consensus 89 ~~~nl-------------------------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 89 HQKNL-------------------------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred ccccc-------------------------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC
Confidence 22211 122589999999999999999999999998764 8899999999
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
++||+||.|.+.+.+.+||..+| ..++.++|.|.++..+..
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999999 888999999999976553
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.6e-26 Score=232.50 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=142.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhcc------------CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQY------------GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~------------G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
..+...++|||+|||+++|+++|++||..| +.|..+.+ .+.+|||||+|.+.++|..||...
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 445668999999999999999999999975 23444443 356799999999999999999644
Q ss_pred CCccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccC
Q 012923 193 QKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG 272 (453)
Q Consensus 193 ~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 272 (453)
...|.|+.|.|................ .........................++|||+|||+.+|+++|+++|+.||
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEV---SQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCC---CCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 456899999887543221110000000 00000000000000001111223457999999999999999999999999
Q ss_pred CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 273 EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
.|..+.|+++..+|.++|||||+|.+.++|..||..|| ..|.|+.|.|.++....
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999999999999999999999999 89999999999986543
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=208.92 Aligned_cols=181 Identities=20% Similarity=0.412 Sum_probs=156.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~ 207 (453)
.-|+|||+.|.+.+.|+.|+..|.+||+|.+|.+..|+.|++++|||||+|.-++.|+.|++.+|+ .+.||.|+|.+..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 458999999999999999999999999999999999999999999999999999999999999995 5899999998654
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
..+....... ........-.+|||..+.+++++++|+.+|+.||.|++|.+.+++..+.
T Consensus 192 NmpQAQpiID---------------------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~ 250 (544)
T KOG0124|consen 192 NMPQAQPIID---------------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 250 (544)
T ss_pred CCcccchHHH---------------------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC
Confidence 3332211100 0011122235999999999999999999999999999999999998899
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~~ 330 (453)
+|||+||+|.+..+-..||..|| +.|+|..|+|..+...|..-
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence 99999999999999999999999 99999999999998776543
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.4e-25 Score=221.51 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=142.0
Q ss_pred CCCcCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~ 204 (453)
.+.+++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|..||..|++ .|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999863 68999999999999999998885 5999999999
Q ss_pred ecccCCCCCCCcCcccccc-----cccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCC--ccee
Q 012923 205 LASIGPATTPAVASTATHQ-----HQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE--IEEG 277 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v 277 (453)
++................. .......................+.+|||+|||..+|+++|+++|+.||. |..|
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 8754332111100000000 00000000000000000112345679999999999999999999999998 8888
Q ss_pred eeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeE------EEEEEccC
Q 012923 278 PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI------LNCQRAID 325 (453)
Q Consensus 278 ~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~------l~v~~a~~ 325 (453)
+++... + ..+++|||+|.+.++|.+||..|| ..|.++. |+|.++++
T Consensus 427 k~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 427 KFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 886543 2 358999999999999999999999 8898885 88888754
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.8e-24 Score=215.24 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=136.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC--C-CccCCeEeEEEec
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP--Q-KKIGNRMTACQLA 206 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~--~-~~~~gr~~~v~~~ 206 (453)
+++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||..+ + ..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999998853 579999999999999999864 3 5699999999998
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCC
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g 286 (453)
............ ..........+|||.||++.+|+++|+++|+.||.|.+|.|+++..
T Consensus 76 ~~~~~~~~~~~~--------------------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~-- 133 (481)
T TIGR01649 76 TSQEIKRDGNSD--------------------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN-- 133 (481)
T ss_pred CCcccccCCCCc--------------------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 654322111000 0000111235899999999999999999999999999999987642
Q ss_pred CCceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEccCC
Q 012923 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDG 326 (453)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a~~~ 326 (453)
+++|||+|.+.++|.+|+..|| ..|.+ +.|+|.|+...
T Consensus 134 --~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 134 --VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred --ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4789999999999999999999 77754 58999998654
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=2.4e-25 Score=225.52 Aligned_cols=190 Identities=18% Similarity=0.233 Sum_probs=146.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+.+|+++|+++|..||.|..|.|+++..+|.++|||||+|.+.++|..||..|++ .|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 47899999999999999999999999999999999998999999999999999999999999884 59999999999865
Q ss_pred CCCCCCCcCcc-cccccccccccccccccccccccccccccEEEEecCCCCc----------cHHHHHHHHhccCCccee
Q 012923 209 GPATTPAVAST-ATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEG 277 (453)
Q Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v 277 (453)
........... ........ . .............+++|+|.||.... ..++|+++|++||.|+.|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 375 GANQATIDTSNGMAPVTLLA---K--ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred CCCCCCcccccccccccccc---c--cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 43322111000 00000000 0 00000001123356799999996421 236899999999999999
Q ss_pred eeeccC---CCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 278 PLGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 278 ~i~~d~---~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.|+++. .++.++|++||+|.+.++|.+||..|| ..|+|+.|.|.|..
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 998753 345678999999999999999999999 89999999999874
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=5.3e-25 Score=189.82 Aligned_cols=148 Identities=21% Similarity=0.410 Sum_probs=135.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecccCC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIGP 210 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~~~ 210 (453)
+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..++...|..||..|++ +|+|..|.|+.+..+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 6999999999999999999999999999999986 899999999999999998885 5999999999886552
Q ss_pred CCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCce
Q 012923 211 ATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKG 290 (453)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg 290 (453)
. ..++|+|+||.+.++.++|+..|++||.|..+.|++ +
T Consensus 76 k----------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------d 113 (346)
T KOG0109|consen 76 K----------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------D 113 (346)
T ss_pred C----------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------c
Confidence 2 235899999999999999999999999999999985 4
Q ss_pred EEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCC
Q 012923 291 FCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~ 329 (453)
|+||+|.-.++|..||+.|+ ..|.|++++|++..++-+.
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 99999999999999999999 9999999999999877443
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.6e-23 Score=209.29 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=144.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~ 206 (453)
+..++|||+|||+.+|+++|+++|++||.|..|.|+++..+++++|||||+|.+.++|.+||..|++ .|.|+.|.|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 3468999999999999999999999999999999999998899999999999999999999998885 599999999997
Q ss_pred ccCCCCCCCcCccccc-----------------------------------ccc-------cccc-------------cc
Q 012923 207 SIGPATTPAVASTATH-----------------------------------QHQ-------HQHQ-------------HQ 231 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~-----------------------------------~~~-------~~~~-------------~~ 231 (453)
................ ... .... ..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 5221110000000000 000 0000 00
Q ss_pred ccc---ccccccccccccccEEEEecCCCCcc----------HHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECC
Q 012923 232 HQH---QHQQHHQQSEYTQRKIFVSNVGSELE----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (453)
Q Consensus 232 ~~~---~~~~~~~~~~~~~~~l~V~nLp~~~t----------~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (453)
... .............++|+|.||....+ .++|++.|++||.|+.|.|.. ..+.|++||+|.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~ 419 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSS 419 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECC
Confidence 000 00000011235678999999965544 368999999999999998863 3458999999999
Q ss_pred HHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 299 VDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 299 ~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
+++|.+|+..|| ..|+|+.|.|.+...
T Consensus 420 ~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 420 VDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999999999 899999999998753
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2e-24 Score=183.84 Aligned_cols=198 Identities=19% Similarity=0.312 Sum_probs=151.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC--ccCC--eEeEEE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGN--RMTACQ 204 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~--~~~g--r~~~v~ 204 (453)
+.|+|||+-|...-.|+|++.+|..||.|.+|.+++.+ .|.+||||||.|.+..+|+.||..|++ ++.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999988 899999999999999999999999984 4554 456677
Q ss_pred ecccCCCC------------------------------------------------------------------------
Q 012923 205 LASIGPAT------------------------------------------------------------------------ 212 (453)
Q Consensus 205 ~~~~~~~~------------------------------------------------------------------------ 212 (453)
++.-...+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 76422211
Q ss_pred CCCcCcccccc-------------------------ccccccc-----------cccc----------------------
Q 012923 213 TPAVASTATHQ-------------------------HQHQHQH-----------QHQH---------------------- 234 (453)
Q Consensus 213 ~~~~~~~~~~~-------------------------~~~~~~~-----------~~~~---------------------- 234 (453)
.+......... .+...+. ....
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 00000000000 0000000 0000
Q ss_pred ----------------ccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECC
Q 012923 235 ----------------QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT 298 (453)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (453)
..-..........+.|||-.||....+.+|.++|-+||.|++.+++.|+.|+.+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0000002345667999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 299 VDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 299 ~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
..+|..||.+|| +.|+-++|+|.+.+++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999 89999999999886543
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=7.7e-24 Score=203.76 Aligned_cols=174 Identities=25% Similarity=0.352 Sum_probs=146.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC---CCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~---g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
++|||.||++++|.++|..+|...|.|.+|.|...+.. -.|.|||||+|.+.++|+.|++.|+ ..|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988765522 1466999999999999999999999 5699999999998
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCC
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g 286 (453)
...+..... ........++.|+|+|||+..+..+|+++|..||.|.+|+|+.....+
T Consensus 596 ~~k~~~~~g-----------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~ 652 (725)
T KOG0110|consen 596 ENKPASTVG-----------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKG 652 (725)
T ss_pred cCccccccc-----------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcch
Confidence 722221110 001111225799999999999999999999999999999999876667
Q ss_pred CCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 287 KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
.++|||||+|-++.+|..|+.+|. ..|.||.|.+.|+....
T Consensus 653 a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 653 AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred hhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 789999999999999999999999 88999999999997643
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=188.72 Aligned_cols=200 Identities=24% Similarity=0.333 Sum_probs=155.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc--c--CCeEeEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--I--GNRMTAC 203 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~--~--~gr~~~v 203 (453)
...++|||+-|+..+||.+|+++|++||.|++|+|++|. .+.+||||||.|.+.+.|..||+.+|+. + +..+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 346889999999999999999999999999999999998 8999999999999999999999999954 4 5568899
Q ss_pred EecccCCCCC-----------------------------------------------------CCc--------------
Q 012923 204 QLASIGPATT-----------------------------------------------------PAV-------------- 216 (453)
Q Consensus 204 ~~~~~~~~~~-----------------------------------------------------~~~-------------- 216 (453)
+|+....... ...
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 9985333220 000
Q ss_pred -----------Ccccc--cccccccc---cc--c------c---------------------------------------
Q 012923 217 -----------ASTAT--HQHQHQHQ---HQ--H------Q--------------------------------------- 233 (453)
Q Consensus 217 -----------~~~~~--~~~~~~~~---~~--~------~--------------------------------------- 233 (453)
.+... ...+.... .. . .
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence 00000 00000000 00 0 0
Q ss_pred --------------------------------------------------cccccccccccccccEEEEecCCCCccHHH
Q 012923 234 --------------------------------------------------HQHQQHHQQSEYTQRKIFVSNVGSELEPQK 263 (453)
Q Consensus 234 --------------------------------------------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 263 (453)
................|||.+||.+.-+.+
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 000000033455568899999999999999
Q ss_pred HHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 264 l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
|-..|..||.|++.++..|+.|+-+|.|+||.|++..+|..||..|| ..|+.++|+|....++..
T Consensus 441 l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 441 LIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999 899999999999876643
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=2.8e-24 Score=201.44 Aligned_cols=191 Identities=20% Similarity=0.345 Sum_probs=160.7
Q ss_pred hcccCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeE
Q 012923 121 RQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200 (453)
Q Consensus 121 ~~~~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~ 200 (453)
......+.+.+|||+--|+..++..+|.+||+.+|.|.+|+||.|+.+++++|.|||+|.+.+++..||...+..+.|-+
T Consensus 170 ~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 170 RILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred ccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 34556677889999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeee
Q 012923 201 TACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG 280 (453)
Q Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 280 (453)
|.|+.............. .........+-.+|||+||.+++|+++|+.+|++||.|..|.+.
T Consensus 250 v~vq~sEaeknr~a~~s~------------------a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~ 311 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASP------------------ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLT 311 (549)
T ss_pred eEecccHHHHHHHHhccc------------------cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeec
Confidence 999887533222100000 00001111222349999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCC
Q 012923 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 281 ~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~ 329 (453)
+|..||+++||+||+|.+.++|.+|+..|| ..|.|+.|+|.....+-..
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 999999999999999999999999999999 9999999999888765443
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=192.09 Aligned_cols=151 Identities=21% Similarity=0.388 Sum_probs=138.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~~ 209 (453)
..|||+ +++|+..|.++|+++|.|.+|+|++|. + +.|||||.|.++++|.+||..+|. .+.|+.|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 369999 999999999999999999999999998 6 999999999999999999999995 599999999998643
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCc
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~k 289 (453)
+. .|||.||+..++...|.++|+.||.|++|++.++. .| ++
T Consensus 76 ~~-------------------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~k 116 (369)
T KOG0123|consen 76 PS-------------------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SK 116 (369)
T ss_pred Cc-------------------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ce
Confidence 22 39999999999999999999999999999999985 44 89
Q ss_pred eEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
|| ||+|.+.++|.+||..+| ..+.++.|.|.....+.
T Consensus 117 g~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 117 GY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred ee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 99 999999999999999999 88899999998876553
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.9e-23 Score=174.41 Aligned_cols=139 Identities=19% Similarity=0.366 Sum_probs=118.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
..-|||||+||..++||+-|..||.+.|.|..|+||.+. |.|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e----------------------------------~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE----------------------------------LKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh----------------------------------hcccccc
Confidence 345899999999999999999999999999999999872 3454544
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
....... .....+-.|||+-|...++-++||+.|.+||+|.+++|+||..|++
T Consensus 50 ~p~nQsk---------------------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K 102 (321)
T KOG0148|consen 50 APGNQSK---------------------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK 102 (321)
T ss_pred CcccCCC---------------------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCc
Confidence 2211110 0111134799999999999999999999999999999999999999
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
+|||+||.|-+.++|+.||..|| .+|++|.|+-.||..++
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 99999999999999999999999 99999999999998777
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.88 E-value=8.3e-21 Score=175.88 Aligned_cols=172 Identities=18% Similarity=0.311 Sum_probs=139.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
....-|.+++|||+||++||.+||+.| .|+++.+.+. +|+..|-|||+|.+.+++++||+.....+..|.|.|..+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 345679999999999999999999999 5777665554 7999999999999999999999999899999999998886
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcce-eeeeccCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATG 286 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~d~~~g 286 (453)
.......... ...........|.+++||+.||+++|.+||+..-.|.. |.++.+ ..+
T Consensus 85 ~~e~d~~~~~---------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rg 142 (510)
T KOG4211|consen 85 GAEADWVMRP---------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRG 142 (510)
T ss_pred CccccccccC---------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCC
Confidence 5443211100 00111123458999999999999999999998865555 444454 478
Q ss_pred CCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 012923 287 KPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (453)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~ 324 (453)
++.|-|||+|.+.+.|++||......|+.|.|.|..+.
T Consensus 143 R~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 143 RPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 89999999999999999999998888999999998775
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=2.6e-20 Score=153.22 Aligned_cols=84 Identities=23% Similarity=0.464 Sum_probs=78.7
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|++||.|.+|.|++|+.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345699999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.3e-20 Score=176.41 Aligned_cols=176 Identities=26% Similarity=0.425 Sum_probs=149.1
Q ss_pred cccCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeE
Q 012923 122 QVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRM 200 (453)
Q Consensus 122 ~~~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~ 200 (453)
.+....++.+.|||.||+.++|..+|.++|+.||.|.+|++.++. +| ++|| ||+|.+.++|.+|++.+|+. +.++.
T Consensus 68 rim~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 68 RIMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred EeehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 334444455559999999999999999999999999999999998 66 9999 99999999999999999965 89999
Q ss_pred eEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeee
Q 012923 201 TACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG 280 (453)
Q Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 280 (453)
|.|.....+.....+... ....-+.++|.|++..++++.|..+|..+|.|..+.++
T Consensus 145 i~vg~~~~~~er~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~ 200 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVM 200 (369)
T ss_pred eEEeeccchhhhcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEe
Confidence 999887654443222111 11223589999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 281 ~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
++. .+++++|+||.|.++++|..|+..++ ..+.+..+.|..+..
T Consensus 201 ~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 201 RDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 975 66799999999999999999999999 777889999988765
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=2.4e-19 Score=177.45 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=75.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~ 207 (453)
..++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+|.. |.|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999989999999999999999999999999954 999999999876
Q ss_pred c
Q 012923 208 I 208 (453)
Q Consensus 208 ~ 208 (453)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=7.5e-18 Score=136.16 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=132.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~ 206 (453)
..+++|||+|||.++.+.+|.++|-+||.|..|.|...+ ..-.||||+|.+..+|+.||..-++. +.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999876543 34579999999999999999987754 99999999998
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCC
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g 286 (453)
.................. ..........+.......+|.|.+||.+.++++|+.+....|.|-...+.+|
T Consensus 81 rggr~s~~~~G~y~gggr------gGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---- 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGR------GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---- 150 (241)
T ss_pred cCCCcccccccccCCCCC------CCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----
Confidence 755422111110000000 0000000111222334468999999999999999999999999999888875
Q ss_pred CCceEEEEEECCHHHHHHHHHcCC-Ccc--CCeEEEEEEc
Q 012923 287 KPKGFCLFVYKTVDAAKKALEEPH-KNF--EGHILNCQRA 323 (453)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~~~-~~l--~g~~l~v~~a 323 (453)
|++.|+|...++..-||.+|. ..+ .|-...+...
T Consensus 151 ---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 151 ---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred ---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 479999999999999999988 433 4544444433
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=5.5e-18 Score=142.86 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=139.2
Q ss_pred cCeEEEcCCCCCCCHHHHHH----HHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEE
Q 012923 130 HRKIFVHGLGWDTKAETLID----AFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~----~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~ 204 (453)
+.||||.||+..+..++|+. +|++||.|..|...+ +.+.||=|||.|.+.+.|..|+..|++. +.|+.++|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999999998 999999999987766 6689999999999999999999999976 899999999
Q ss_pred ecccCCCCCCCcCccccccccc-----cc---c---ccc------ccccccc-cccccccccEEEEecCCCCccHHHHHH
Q 012923 205 LASIGPATTPAVASTATHQHQH-----QH---Q---HQH------QHQHQQH-HQQSEYTQRKIFVSNVGSELEPQKLLA 266 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-----~~---~---~~~------~~~~~~~-~~~~~~~~~~l~V~nLp~~~t~~~l~~ 266 (453)
++..+................. .. + ... ....... ..........||+.|||..++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9975543321111000000000 00 0 000 0000000 123355678999999999999999999
Q ss_pred HHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC-CeEEEEEEc
Q 012923 267 FFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRA 323 (453)
Q Consensus 267 ~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~-g~~l~v~~a 323 (453)
+|.+|.....|+++... +++|||+|.+...|..|...+. ..|- ...+.|.++
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 99999999999998754 8899999999999999998887 5553 677777665
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=8e-19 Score=165.03 Aligned_cols=189 Identities=20% Similarity=0.313 Sum_probs=138.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~~~ 209 (453)
.+|||+||.+++|+++|+.+|++||.|..|.+.+|..+|.++||+||+|.+.++|.+|++.+|+. |.||.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999999999999999999999999999999964 89999998765433
Q ss_pred CCCCCCcCcccc-------------cc-ccccc-------------------c-------ccccccccccc-------cc
Q 012923 210 PATTPAVASTAT-------------HQ-HQHQH-------------------Q-------HQHQHQHQQHH-------QQ 242 (453)
Q Consensus 210 ~~~~~~~~~~~~-------------~~-~~~~~-------------------~-------~~~~~~~~~~~-------~~ 242 (453)
............ .. .+... . ........... +.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 222111000000 00 00000 0 00000000001 11
Q ss_pred ccccccEEEEecCCCCcc----------HHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C
Q 012923 243 SEYTQRKIFVSNVGSELE----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t----------~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (453)
-.+.+.|+.|.|+-...| .++|.+-|.+||.|..|.|.+. +-|+.||.|.+.+.|..|+.+|| .
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhh
Confidence 125677888888843322 2678888999999998887543 24999999999999999999999 9
Q ss_pred ccCCeEEEEEEcc
Q 012923 312 NFEGHILNCQRAI 324 (453)
Q Consensus 312 ~l~g~~l~v~~a~ 324 (453)
+|.|+.|.+.|-.
T Consensus 514 WF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 514 WFAGRMITAKYLP 526 (549)
T ss_pred hhccceeEEEEee
Confidence 9999999998864
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.77 E-value=8.1e-18 Score=153.18 Aligned_cols=195 Identities=19% Similarity=0.289 Sum_probs=147.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~-~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
....|.|||.|||+++.+.+|++||. +.|+|+.|.|+.|. +|++||||.|+|++++.+++|++.|+ ..+.||.|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34457799999999999999999996 68999999999998 99999999999999999999999999 55999999997
Q ss_pred ecccCCCCC--------------------------------------CCcCccccccc-------c--c-----cccccc
Q 012923 205 LASIGPATT--------------------------------------PAVASTATHQH-------Q--H-----QHQHQH 232 (453)
Q Consensus 205 ~~~~~~~~~--------------------------------------~~~~~~~~~~~-------~--~-----~~~~~~ 232 (453)
--....... .+.......+. . . ......
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 653211100 00000000000 0 0 000000
Q ss_pred -ccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-
Q 012923 233 -QHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH- 310 (453)
Q Consensus 233 -~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~- 310 (453)
.......+-...+...++||.||.+.+....|.+.|.-.|.|..|.+-.|+ .|.++|||.|+|..+-.|..||..++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 001111112344556799999999999999999999999999999998886 56999999999999999999999999
Q ss_pred CccCCeEEEEEEc
Q 012923 311 KNFEGHILNCQRA 323 (453)
Q Consensus 311 ~~l~g~~l~v~~a 323 (453)
.-+..++..+++.
T Consensus 279 ~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 279 QGLFDRRMTVRLD 291 (608)
T ss_pred CCCccccceeecc
Confidence 6677888777764
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=9.5e-18 Score=138.02 Aligned_cols=85 Identities=32% Similarity=0.656 Sum_probs=78.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
...+++|||+|||+++|+++|+++|.+||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999877 569999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+..++.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 875543
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=4.2e-17 Score=144.74 Aligned_cols=194 Identities=15% Similarity=0.239 Sum_probs=143.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccC
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIG 197 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~ 197 (453)
...++.|||.|||.++|-+++.++|++||.|.. |+|.++. .|+.+|-|+|.|-..+++..|+..|+ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344678999999999999999999999998753 7888888 69999999999999999999999999 4589
Q ss_pred CeEeEEEecccCCCCCCCcCccccccc----cccccccccc--ccccccccccccccEEEEecCCCC----cc-------
Q 012923 198 NRMTACQLASIGPATTPAVASTATHQH----QHQHQHQHQH--QHQQHHQQSEYTQRKIFVSNVGSE----LE------- 260 (453)
Q Consensus 198 gr~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~nLp~~----~t------- 260 (453)
|+.|+|..+.....-............ ....+..... .............++|.|+||-.. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999998744332211111111011 0111111100 111123455556789999998421 22
Q ss_pred HHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 261 PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 261 ~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|++-+++||.|.+|.|.- ..+.|.+-|.|.+.++|..||..|+ ++|+||.|..+..-.
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 467778899999999998853 2348999999999999999999999 999999999887643
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=4.2e-16 Score=144.96 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=135.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~-v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
..-.|.+++||+.||++||.+||+..-.|.. |.++.+. .+++.|-|||+|++.+.|++||..++..|..|.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 4468999999999999999999998765555 4455555 7889999999999999999999999999999999998775
Q ss_pred cCCCCCCC----------c---C----cc----cccccccc---------------------------------c---cc
Q 012923 208 IGPATTPA----------V---A----ST----ATHQHQHQ---------------------------------H---QH 230 (453)
Q Consensus 208 ~~~~~~~~----------~---~----~~----~~~~~~~~---------------------------------~---~~ 230 (453)
........ . . .. ........ . ..
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 21111000 0 0 00 00000000 0 00
Q ss_pred c---ccccccccc-ccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHH
Q 012923 231 Q---HQHQHQQHH-QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (453)
Q Consensus 231 ~---~~~~~~~~~-~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (453)
. .+....... .........++.++||+..+..+|..+|+..-.+ .|.|-.. .+|+..|-|+|+|.|+++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhh
Confidence 0 000000000 1112223789999999999999999999977544 6666553 58999999999999999999999
Q ss_pred HcCCCccCCeEEEEEEc
Q 012923 307 EEPHKNFEGHILNCQRA 323 (453)
Q Consensus 307 ~~~~~~l~g~~l~v~~a 323 (453)
.+-+..+..+.|.+...
T Consensus 339 skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLN 355 (510)
T ss_pred ccCCcccCcceeeeccc
Confidence 99888888888887664
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=7.4e-17 Score=136.21 Aligned_cols=82 Identities=33% Similarity=0.564 Sum_probs=77.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccC
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~ 325 (453)
.-++|||++|+|.++.+.|+++|++||+|+.+.|+.|+.||+||||+||+|.+.++|.+|++..|..|+||+..|.+|..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 44799999999999999999999999999999999999999999999999999999999999999899999999999876
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
..
T Consensus 91 g~ 92 (247)
T KOG0149|consen 91 GG 92 (247)
T ss_pred cC
Confidence 43
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=3.2e-17 Score=138.43 Aligned_cols=83 Identities=45% Similarity=0.801 Sum_probs=78.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
.-++|||++|+|.++.+.|+++|++||+|+++.||.|+.+++||||+||+|++.++|.+|++.-+-.|+||+..|+++..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 012923 209 GPA 211 (453)
Q Consensus 209 ~~~ 211 (453)
..+
T Consensus 91 g~~ 93 (247)
T KOG0149|consen 91 GGK 93 (247)
T ss_pred cCc
Confidence 433
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.69 E-value=4.1e-16 Score=130.06 Aligned_cols=177 Identities=18% Similarity=0.242 Sum_probs=123.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcc-cCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c---CCeEeEEE
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVC-DKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNRMTACQ 204 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~-d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~---~gr~~~v~ 204 (453)
-|||||.+||.++...+|..+|..|--.+.+.|.. ++...-++-+|||+|.+..+|.+|+.+||+. + .+..|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 48999999999999999999999997777666544 3323346689999999999999999999975 3 67889999
Q ss_pred ecccCCCCCCCcCcccccc-----------ccccc---cc----------------------------------------
Q 012923 205 LASIGPATTPAVASTATHQ-----------HQHQH---QH---------------------------------------- 230 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~---------------------------------------- 230 (453)
++....+..+......+.. .++.. ++
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 9876554422221110000 00000 00
Q ss_pred ccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 231 QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
..+.............+.+|||.||...||+++|+++|+.|-....++|. ..|. ...|||+|.+.+.|..|+..|.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~---~~~g-~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR---ARGG-MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe---cCCC-cceEeecHHHHHHHHHHHHHhh
Confidence 00000001112334556899999999999999999999999877666662 2222 4579999999999999998865
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=5.9e-16 Score=145.87 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=77.9
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+++|+++|+++|+.||.|+.|+|++|+.+++++|||||+|.+.++|.+||..|+ ..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EccC
Q 012923 322 RAID 325 (453)
Q Consensus 322 ~a~~ 325 (453)
++..
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8864
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=3.2e-16 Score=151.69 Aligned_cols=193 Identities=21% Similarity=0.245 Sum_probs=137.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~ 204 (453)
.....+.|+|+|||..+..++|..+|..||.|..|.+. + .|. -|+|.|.+..+|.+|+..+... +....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-ccc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 44556889999999999999999999999999998443 2 232 3999999999999999999844 666777777
Q ss_pred ecccCCCCCCC-----cCccccc----ccccccccccccc--------cccccc-cccccccEEEEecCCCCccHHHHHH
Q 012923 205 LASIGPATTPA-----VASTATH----QHQHQHQHQHQHQ--------HQQHHQ-QSEYTQRKIFVSNVGSELEPQKLLA 266 (453)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~l~V~nLp~~~t~~~l~~ 266 (453)
|+........+ ....... ..+.......+.. ...... ......++|||.||++.+|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 76533332110 0000000 0000000000000 000101 1122223499999999999999999
Q ss_pred HHhccCCcceeeeeccCCC---CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 267 FFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 267 ~F~~~G~i~~v~i~~d~~~---g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
+|...|.|..|.|...+.. -.|.|||||+|.+.++|..|++.|+ ..|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988765422 2356999999999999999999999 99999999999987
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.6e-16 Score=133.56 Aligned_cols=164 Identities=18% Similarity=0.322 Sum_probs=128.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~~ 209 (453)
.+|||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..|+..+++ .|++..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999987543 5899999999999999999985 478877888887643
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCc
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~k 289 (453)
.......... ................++|+|.+|+..+.+.+|...|.++|.+....+ .+
T Consensus 74 ~~~~g~~~~g------------~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~ 133 (216)
T KOG0106|consen 74 RRGRGRPRGG------------DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RR 133 (216)
T ss_pred ccccCCCCCC------------CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hc
Confidence 2211000000 000011112233455679999999999999999999999999965544 27
Q ss_pred eEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
+++||+|.+.++|.+||..++ ..|.++.|.+..
T Consensus 134 ~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 799999999999999999999 899999999943
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=7.2e-15 Score=131.19 Aligned_cols=196 Identities=16% Similarity=0.261 Sum_probs=138.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~ 206 (453)
..-.+|||..+.++.+++||+.+|+.||+|..|.+-+++..+.+|||+||+|.+..+...|+..+|- .|.|..|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3456899999999999999999999999999999999998889999999999999999999999995 499999999776
Q ss_pred ccCCCC-----------------------------------------CCCcCccccccccc-----c-------------
Q 012923 207 SIGPAT-----------------------------------------TPAVASTATHQHQH-----Q------------- 227 (453)
Q Consensus 207 ~~~~~~-----------------------------------------~~~~~~~~~~~~~~-----~------------- 227 (453)
.-.+.. .....+......+. +
T Consensus 288 vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~ 367 (544)
T KOG0124|consen 288 VTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITG 367 (544)
T ss_pred cCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceecc
Confidence 422211 00000000000000 0
Q ss_pred ----------------------------------------c-cccccccc----------cc--------cccccccccc
Q 012923 228 ----------------------------------------H-QHQHQHQH----------QQ--------HHQQSEYTQR 248 (453)
Q Consensus 228 ----------------------------------------~-~~~~~~~~----------~~--------~~~~~~~~~~ 248 (453)
. +.+..... .. ........++
T Consensus 368 vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~ 447 (544)
T KOG0124|consen 368 VTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQEST 447 (544)
T ss_pred CCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCc
Confidence 0 00000000 00 0022344567
Q ss_pred EEEEecC--CCCcc---HHHHHHHHhccCCcceeeeeccCCCCCC----ceEEEEEECCHHHHHHHHHcCC-CccCCeEE
Q 012923 249 KIFVSNV--GSELE---PQKLLAFFSKYGEIEEGPLGIDKATGKP----KGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (453)
Q Consensus 249 ~l~V~nL--p~~~t---~~~l~~~F~~~G~i~~v~i~~d~~~g~~----kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l 318 (453)
.|.++|+ |.+++ +.+|++-|.+||.|.+|.|...+.++.- ---.||+|.....+.+|+.+|+ ++|.||++
T Consensus 448 VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 448 VIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 8889998 44443 4678999999999999988776544321 1137999999999999999999 88999988
Q ss_pred EEEEc
Q 012923 319 NCQRA 323 (453)
Q Consensus 319 ~v~~a 323 (453)
.....
T Consensus 528 vAE~Y 532 (544)
T KOG0124|consen 528 VAEVY 532 (544)
T ss_pred ehhhh
Confidence 76543
No 49
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1e-15 Score=129.78 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=77.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
...+|.|.||+.++++++|+++|.+||.|.+|.|.+|+.||.+||||||+|.+.++|.+||..|| +-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 55799999999999999999999999999999999999999999999999999999999999999 88999999999996
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 54
No 50
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=9.1e-16 Score=116.61 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=75.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..+++|||+||++.+++++|.++|+++|.|..|.+-.|+.+..+.|||||+|.+.++|..||+.++ ..|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8999999999987
No 51
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=136.17 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=134.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQY----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~----G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.-.|.+++||+++|+.++.+||.+- |-++.|.+++.+ +|+..|-|||.|..+++|+.||.+....|..|.|.+..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3468899999999999999999632 234456555554 89999999999999999999999988888888887765
Q ss_pred cccCCCCCCCcCccc-ccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCC-cce--eeeec
Q 012923 206 ASIGPATTPAVASTA-THQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEE--GPLGI 281 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~--v~i~~ 281 (453)
+.......-...... ...... ............-.......+|.+++||+..+.++|..||..|-. |.. |+++.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~--~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGL--TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HhHHHHHHHHHhhccccccCCC--CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 532111000000000 000000 000000001111222333569999999999999999999998864 333 66666
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
+ ..|+..|-|||+|.+.++|..|....+ +....|.|.|..+...
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 4 579999999999999999999999988 5556999999887543
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-15 Score=126.76 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=76.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~ 207 (453)
+..+|.|.||+.++++++|++||.+||.|..|.|.+|+.||.+||||||.|.+.++|.+||..|++. +..-.|+|.|+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6678999999999999999999999999999999999999999999999999999999999999966 888899999986
Q ss_pred cC
Q 012923 208 IG 209 (453)
Q Consensus 208 ~~ 209 (453)
+.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 43
No 53
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=136.03 Aligned_cols=169 Identities=22% Similarity=0.344 Sum_probs=123.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|.+||.|..|+|..++.+++++|||||.|.+.++|..|+..++ ..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999 669999999999753
Q ss_pred --CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCC
Q 012923 209 --GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG 286 (453)
Q Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g 286 (453)
......... ......................+++.+++..++...+...|..+|.|..+.+.......
T Consensus 195 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (306)
T COG0724 195 ASQPRSELSNN----------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGK 264 (306)
T ss_pred ccccccccccc----------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCc
Confidence 111111100 00000000012223344455799999999999999999999999999877776554333
Q ss_pred CCceEEEEEECCHHHHHHHHHc
Q 012923 287 KPKGFCLFVYKTVDAAKKALEE 308 (453)
Q Consensus 287 ~~kg~afV~F~~~~~A~~Al~~ 308 (453)
....+.++.+.....+..++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 265 IPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccccccchhHHHhhhhhhcc
Confidence 3444444444444444444433
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.9e-15 Score=113.86 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~ 206 (453)
..++||||+||++.+||+.|.++|+++|+|..|.+-.|+.+....|||||+|.+.++|..||+-++. .|..+.|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4468999999999999999999999999999999999998999999999999999999999999985 499999999986
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=5.8e-15 Score=106.74 Aligned_cols=69 Identities=43% Similarity=0.640 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 133 lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
|||+|||.++|+++|+++|++||.|..++++.+ .++.+++||||+|.+.++|.+|++.++ ..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 488999999999999999999999877 458888875
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5e-15 Score=107.08 Aligned_cols=69 Identities=30% Similarity=0.609 Sum_probs=65.6
Q ss_pred EEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 250 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
|||+|||..+|+++|+++|+.||.|..+.+..+ .++..++||||+|.+.++|.+|+..++ ..|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 688899999999999999999999988 889999885
No 57
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=6.9e-15 Score=121.37 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=77.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
....+|.|-||.+-+|.++|+.+|++||.|-+|.|++|+.|..++|||||.|....+|+.|+.+|+ ..|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 345699999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
.=.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 643
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=1.1e-13 Score=126.61 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=67.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+++|+..|++-|..||.|..+.|+ +.|+++| .|.|.++++|+.|+..|+ ..|+||.|+|.+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 445789999999999999999999999999999984 4688887 899999999999999999 8999999999873
No 59
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.56 E-value=1.4e-13 Score=125.08 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=140.0
Q ss_pred cCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 130 HRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 130 ~~~lfV~nLp-~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
++.|.|.||. ..+|.+-|..+|.-||.|..|+|+.++. --|+|+|.+...|+.|++.|+ ..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6789999996 7789999999999999999999998763 359999999999999999999 56999999999987
Q ss_pred cCCCCCCCcCccc---ccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCC
Q 012923 208 IGPATTPAVASTA---THQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA 284 (453)
Q Consensus 208 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~ 284 (453)
......+...... .........++..............++.+|++.|+|.++++++|+.+|...|-..+.....
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 5544332211111 1111111111111222223334456678999999999999999999999988776554332
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCC-eEEEEEEccC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HILNCQRAID 325 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g-~~l~v~~a~~ 325 (453)
++.+-+|++.+.+.+.|..|+..++ +.+.. +.|+|+|.++
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3346799999999999999999998 77765 5899998764
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.2e-14 Score=137.26 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=141.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~~ 208 (453)
..++||++||...++..++++...||.+...+++.|..+|.++||||.+|.+......|+..+|++ +.++.|.|..+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 457999999999999999999999999999999999999999999999999999999999999966 7889999999876
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCC--Cc-c-------HHHHHHHHhccCCcceee
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGS--EL-E-------PQKLLAFFSKYGEIEEGP 278 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~--~~-t-------~~~l~~~F~~~G~i~~v~ 278 (453)
............. .................+..|.+.|+=. .+ . -++|+.-|.+||.|..|.
T Consensus 369 g~~~~~~~~~~~~--------~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ 440 (500)
T KOG0120|consen 369 GASNANVNFNISQ--------SQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVE 440 (500)
T ss_pred cchhccccCCccc--------cccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEe
Confidence 6544333222000 0000111111123344445666666511 11 1 145667788999999999
Q ss_pred eeccC---CCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 279 LGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 279 i~~d~---~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
|.++- ...-..|..||+|.+.+++++|...|+ .+|.+|.|.+.|..
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 98872 223346779999999999999999999 89999999998863
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.4e-14 Score=125.77 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=70.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecccC
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~ 209 (453)
.++|||+|||+.+|+++|++||+.||.|.+|+|+++.. ++|||||+|.+.++|..||...+..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 47999999999999999999999999999999998863 579999999999999999976557899999999998643
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=1.6e-14 Score=104.33 Aligned_cols=69 Identities=28% Similarity=0.539 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 133 IFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 133 lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
|||+|||+++++++|+++|+.||.|..|+++.++. +.++|+|||+|.+.++|.+|+..++ ..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 8999999999999999999999998 669999874
No 63
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2e-14 Score=110.31 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=84.0
Q ss_pred cccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
........|||.++...+|+++|...|..||.|++|.|-.|+.||-.||||+|+|.+...|.+|+..+| ..|.|.+|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 344456799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEccCCCCCCCCC
Q 012923 321 QRAIDGPKPGKSR 333 (453)
Q Consensus 321 ~~a~~~~~~~~~~ 333 (453)
.|++.+++....+
T Consensus 147 Dw~Fv~gp~~g~r 159 (170)
T KOG0130|consen 147 DWCFVKGPERGKR 159 (170)
T ss_pred EEEEecCCccCcc
Confidence 9999887654443
No 64
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-15 Score=123.53 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=78.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v 203 (453)
..=.++.-|||+|||++.||.||..+|++||+|++|.|++|+.||+|+||||+.|.+..+-..|+..+|+. |.||.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34455678999999999999999999999999999999999999999999999999999999999999965 99999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.-......
T Consensus 110 DHv~~Yk~ 117 (219)
T KOG0126|consen 110 DHVSNYKK 117 (219)
T ss_pred eecccccC
Confidence 87654433
No 65
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.1e-14 Score=123.44 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=77.7
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
..+-+||||.-|++.+++..|+..|+.||.|+.|+||+|+.||+++|||||+|.+.-+...|.+..+ ..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3456899999999999999999999999999999999999999999999999999999999999998 899999999988
Q ss_pred ccCC
Q 012923 323 AIDG 326 (453)
Q Consensus 323 a~~~ 326 (453)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7544
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=2.6e-14 Score=103.20 Aligned_cols=69 Identities=30% Similarity=0.583 Sum_probs=64.0
Q ss_pred EEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 250 IFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 250 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
|||+|||+.+++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 8999999999999999999999999 899999885
No 67
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=4.2e-14 Score=140.31 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=97.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~--G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
.++|||+||++++|+++|+++|++| |.|..|++++ +||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998764 499999999999999999888 5699999999999
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcc
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE 275 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 275 (453)
................. . ....................++++.||++.++++.|+++|..+|.|.
T Consensus 305 kp~~~~~~~~~~rg~gg--~--~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGG--R--GKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred cCCCcccccccccccCC--C--cccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 65433211000000000 0 00000000011122333467999999999999999999999998754
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.6e-14 Score=123.47 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=69.4
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+||++.+|+++|+++|+.||.|.+|+|+++.. ++|||||+|.+.++|..||. |+ ..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 36999999999999999999999999999999998864 47999999999999999996 56 999999999999864
Q ss_pred C
Q 012923 326 G 326 (453)
Q Consensus 326 ~ 326 (453)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.4e-14 Score=126.39 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=78.4
Q ss_pred ccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
.......++|+|.|||+..-+-||+.+|.+||.|.+|.||.+ ...||||+||+|++.+||++|..+|| ..+.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 444555689999999999999999999999999999999875 45679999999999999999999999 899999999
Q ss_pred EEEccCCCCCC
Q 012923 320 CQRAIDGPKPG 330 (453)
Q Consensus 320 v~~a~~~~~~~ 330 (453)
|..+..+....
T Consensus 168 Vn~ATarV~n~ 178 (376)
T KOG0125|consen 168 VNNATARVHNK 178 (376)
T ss_pred EeccchhhccC
Confidence 99998774433
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.3e-15 Score=123.07 Aligned_cols=83 Identities=29% Similarity=0.465 Sum_probs=77.6
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
+.-|||+|||+.+|+.+|.-+|++||.|+.|.|+||+.||+|+||||+.|.+..+...|+..+| ..|.||.|+|.-...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 3589999999999999999999999999999999999999999999999999999999999999 899999999988765
Q ss_pred CCCC
Q 012923 326 GPKP 329 (453)
Q Consensus 326 ~~~~ 329 (453)
...+
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 5444
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=3e-14 Score=124.26 Aligned_cols=83 Identities=33% Similarity=0.520 Sum_probs=76.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..-+||||.-|+++++|.+|+..|+.||.|..|+|++|+.||+++|||||+|.+..+...|.+... .+|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 346899999999999999999999999999999999999999999999999999999999999887 5599999999987
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 5443
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.6e-14 Score=113.72 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=71.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~ 207 (453)
..++|||+||+..+++.+|..+|..||.|..|+|-+++ .|||||+|.++.+|..|+..|++ .|+|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46899999999999999999999999999999998865 58999999999999999999995 5999999999987
Q ss_pred cCCC
Q 012923 208 IGPA 211 (453)
Q Consensus 208 ~~~~ 211 (453)
..+.
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6554
No 73
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=2.8e-14 Score=132.34 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=67.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccH--HHHHHHHHcCC-CccCCeEeEEEec
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR--SGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~--~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..+||||||++++|+++|+.+|..||.|.+|.|++. +| ||||||+|.+. .++.+||..|+ ..+.||.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 468999999999999999999999999999999944 66 99999999987 78999999999 4599999999988
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 5
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.3e-13 Score=111.16 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=71.8
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+||+..+++.+|..+|..||.|..|.|.+.+ .|||||+|++..+|..|+..|+ ..|+|..|.|++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4699999999999999999999999999999998755 8999999999999999999999 999999999999876
Q ss_pred CCC
Q 012923 326 GPK 328 (453)
Q Consensus 326 ~~~ 328 (453)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 654
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-14 Score=118.18 Aligned_cols=81 Identities=20% Similarity=0.404 Sum_probs=77.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||++|...+|+.-|...|-+||.|..|.++.|.+++++|||+||+|.-.++|.+||..|| .+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 44799999999999999999999999999999999999999999999999999999999999999 99999999999996
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
+.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 54
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=100.36 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=70.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~ 207 (453)
.++-|||+|||+++|.+++.++|.+||.|..|+|-..+ ..+|.|||.|++..+|.+|+..|.+. +.++.+.|.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 45789999999999999999999999999999998765 46899999999999999999999965 999999998875
Q ss_pred c
Q 012923 208 I 208 (453)
Q Consensus 208 ~ 208 (453)
.
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 3
No 77
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=3e-13 Score=98.97 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=71.1
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
.-.+.|||+|||+.+|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|+..|+ ..+.++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 34578999999999999999999999999999999766555 9999999999999999999999 8999999999887
Q ss_pred cC
Q 012923 324 ID 325 (453)
Q Consensus 324 ~~ 325 (453)
..
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 53
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.9e-13 Score=116.94 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=70.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
...+|||+||++.+|+++|++||+.||.|.+|+|++|. .+++||||+|.++++|..||...+..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45799999999999999999999999999999999984 556899999999999999998777889999999988653
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.5e-13 Score=109.33 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=68.9
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||.++-+.+|..+|-+||.|..|.| ++.-....||||+|++..+|+.||..-+ ..++|..|+|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL---K~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL---KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEe---ccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4579999999999999999999999999999988 3334457899999999999999999999 89999999999985
Q ss_pred C
Q 012923 325 D 325 (453)
Q Consensus 325 ~ 325 (453)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 3
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=121.54 Aligned_cols=80 Identities=19% Similarity=0.384 Sum_probs=73.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~ 206 (453)
..-++|+|.|||+...+.||+.+|.+||.|.+|.||.+. .-||||+||+|.+.++|++|-++|++ .|.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 335789999999999999999999999999999999874 45899999999999999999999995 499999999998
Q ss_pred ccC
Q 012923 207 SIG 209 (453)
Q Consensus 207 ~~~ 209 (453)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 765
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.1e-13 Score=114.38 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=77.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~ 208 (453)
..+|.|-||-+-+|.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|....+|+.||+.|.+ .|.|+.|.|+++.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999995 59999999999875
Q ss_pred CCC
Q 012923 209 GPA 211 (453)
Q Consensus 209 ~~~ 211 (453)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 544
No 82
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.6e-12 Score=122.25 Aligned_cols=190 Identities=19% Similarity=0.269 Sum_probs=128.0
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCC--Ccce---EEEEEEccHHHHHHHHHcCCCccCC
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKG---YGFILFKTRSGARKALKEPQKKIGN 198 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g--~~~G---~afV~f~~~~~a~~A~~~~~~~~~g 198 (453)
.....-+++|||++||++++|+.|...|..||.|..-+-.+....+ -.+| |+|+.|.++.+++.-|......-..
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 3445668899999999999999999999999987544332211111 2456 9999999999999888765432222
Q ss_pred eEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHh-ccCCccee
Q 012923 199 RMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIEEG 277 (453)
Q Consensus 199 r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v 277 (453)
-.+.|.....+...... .++.. .....-..........+||||++||.-++.++|..+|. -||.|..+
T Consensus 333 ~yf~vss~~~k~k~VQI----rPW~l-------aDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ya 401 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQI----RPWVL-------ADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYV 401 (520)
T ss_pred eEEEEecCcccccceeE----EeeEe-------ccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEE
Confidence 22222222111110000 00000 00000001233445668999999999999999999999 79999999
Q ss_pred eeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCcc----CCeEEEEEEcc
Q 012923 278 PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNF----EGHILNCQRAI 324 (453)
Q Consensus 278 ~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l----~g~~l~v~~a~ 324 (453)
-|-.|++-+-++|-|-|+|.+..+-.+||.+--..| ..++|.|+.-.
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 999998889999999999999999999998744222 23456655443
No 83
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.3e-13 Score=126.27 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=70.2
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCH--HHHHHHHHcCC-CccCCeEEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV--DAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~--~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
...+|||+||++.+|+++|+.+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..|| ..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 446999999999999999999999999999999995 467 99999999987 78999999999 899999999999
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 974
No 84
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.44 E-value=1.7e-13 Score=125.02 Aligned_cols=178 Identities=21% Similarity=0.210 Sum_probs=143.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~ 207 (453)
..+++|++++...+.+.++..+|..+|.+..+.+.....+..++|+++|.|...+.+..||..... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467999999999999999999999999988888888777889999999999999999999998874 4555555554443
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
....... ............+.++|.+|++.+++++|+..|..+|.|..+++..++.++.
T Consensus 167 ~~~~~~~---------------------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 167 RRGLRPK---------------------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD 225 (285)
T ss_pred ccccccc---------------------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc
Confidence 2221000 0000111222233455999999999999999999999999999999999999
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
++||+||.|.+...+..++.. . ..+.++++.|.+...++.
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 999999999999999999998 6 889999999988865543
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=9.3e-13 Score=113.81 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~ 325 (453)
..+|||+||++.+|+++|++||+.||.|.+|+|+++. ..++||||+|.+.++|..||...+..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 4699999999999999999999999999999999884 447899999999999999996655999999999988653
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=1.5e-12 Score=118.37 Aligned_cols=187 Identities=15% Similarity=0.136 Sum_probs=127.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeEEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTACQ 204 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~v~ 204 (453)
..++.|.+||||++++|.+|..++.+||.|..+.+++.+. -|||+|.+.++|..-+.... -.+.++.|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3578999999999999999999999999999998776542 59999999999887554433 34789999998
Q ss_pred ecccCCCCCCCcCccccc----ccccccc---ccccc-ccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcce
Q 012923 205 LASIGPATTPAVASTATH----QHQHQHQ---HQHQH-QHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 276 (453)
++................ ......+ ..... ............-.+++|.|+-+.+|-+-|.++|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 875433222111100000 0000000 00000 000011122223458889999999999999999999999998
Q ss_pred eeeeccCCCCCCceE-EEEEECCHHHHHHHHHcCC-Ccc-CC-eEEEEEEccC
Q 012923 277 GPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNF-EG-HILNCQRAID 325 (453)
Q Consensus 277 v~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~l-~g-~~l~v~~a~~ 325 (453)
|.-+... .+| |.|+|.+.+.|..|...|. ..| +| +.|++.+...
T Consensus 180 IiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 180 IITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 8765432 444 8999999999999999998 555 33 5566666543
No 87
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=1.9e-13 Score=130.44 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=77.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.+|+++|||||+|.+.++|..|++.|+ ..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999 5699999999998755
Q ss_pred CC
Q 012923 210 PA 211 (453)
Q Consensus 210 ~~ 211 (453)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.9e-13 Score=112.80 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=78.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...|||||++|..++|+.-|...|-+||.|.+|.|..|-.++++||||||+|...++|.+||..|+ ..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 345899999999999999999999999999999999999999999999999999999999999999 5699999999999
Q ss_pred ccCCC
Q 012923 207 SIGPA 211 (453)
Q Consensus 207 ~~~~~ 211 (453)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 75443
No 89
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.40 E-value=3.3e-11 Score=118.18 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..+|||||++|+.++++.||..+|+.||.|.+|.++. ++|||||......+|.+||..|+ ..+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3478999999999999999999999999999998775 46899999999999999999988 5599999999999
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHh
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFS 269 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~ 269 (453)
...-... .....+...|=|.-||+..-.++|+.+++
T Consensus 493 ~g~G~ks---------------------------e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKS---------------------------EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcch---------------------------hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 7554332 11122333456666788755555777765
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=1.3e-12 Score=94.46 Aligned_cols=71 Identities=31% Similarity=0.577 Sum_probs=66.2
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
+|||+|||..++.++|+++|..||.|..+.+.++. +.++++|||+|.+.++|.+|+..++ ..|.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999999 88999998873
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=7.3e-13 Score=101.78 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=77.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.-.|||.++...+|+++|.+.|..||+|.+|+|-.|+.||-.+|||+|+|.+.+.|++|+..+| ..|.+..|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4579999999999999999999999999999999999999999999999999999999999999 569999999999986
Q ss_pred CCC
Q 012923 209 GPA 211 (453)
Q Consensus 209 ~~~ 211 (453)
...
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 544
No 92
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.39 E-value=6.8e-11 Score=106.47 Aligned_cols=163 Identities=14% Similarity=0.189 Sum_probs=123.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeEEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTACQ 204 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~v~ 204 (453)
..+-.|.|++|-..+++.||.+.++.||.|..|..+..+ .-|.|+|.+.+.|..|+...- -.+.|....+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 345679999999999999999999999999998776543 369999999999999986432 33677777777
Q ss_pred ecccCCCCCCCcCcccccccccccccccccccccccccccccccEEE--EecCCCCccHHHHHHHHhccCCcceeeeecc
Q 012923 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIF--VSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d 282 (453)
++......+.. .......+.|. |-|--+.+|.+-|.+++..+|.|.+|.|++.
T Consensus 103 yStsq~i~R~g-------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk 157 (494)
T KOG1456|consen 103 YSTSQCIERPG-------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK 157 (494)
T ss_pred cchhhhhccCC-------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec
Confidence 76544332211 11111223333 4566678999999999999999999999875
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc--CCeEEEEEEccCC
Q 012923 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNF--EGHILNCQRAIDG 326 (453)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l--~g~~l~v~~a~~~ 326 (453)
+| --|.|+|++.+.|.+|...|| ..| +-.+|+|.+|++.
T Consensus 158 --ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 158 --NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred --cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 22 259999999999999999999 444 3478999998644
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=1.9e-12 Score=93.61 Aligned_cols=70 Identities=36% Similarity=0.579 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
+|||+|||..++.++|+++|.+||.|..++++.++ +.++|+|||+|.+.++|..|+..++ ..+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 59999999999999999999999999999998876 7789999999999999999999988 5688888876
No 94
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=5.9e-13 Score=108.07 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=75.5
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..+|||+||+..++++.|+++|-+.|.|++++|++|+.+...+|||||+|.+.++|.=|++.|| ..|.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4599999999999999999999999999999999999999999999999999999999999999 89999999999986
No 95
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.9e-12 Score=119.18 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc-CCeEEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l-~g~~l~v~~ 322 (453)
...+-|||+.||.++.+++|.-+|++.|.|-.++|++|+.+|.+||||||+|.+.+.|..||+.|| .+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999999999 766 688888877
Q ss_pred ccCC
Q 012923 323 AIDG 326 (453)
Q Consensus 323 a~~~ 326 (453)
+..+
T Consensus 161 Svan 164 (506)
T KOG0117|consen 161 SVAN 164 (506)
T ss_pred eeec
Confidence 6543
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=2.2e-12 Score=92.97 Aligned_cols=70 Identities=37% Similarity=0.608 Sum_probs=65.6
Q ss_pred EecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 252 VSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 252 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..++ ..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999 88999998873
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.9e-12 Score=122.91 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=142.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhcc-----------C-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQY-----------G-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~-----------G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
.....+++||++||+.++++.+..||..- | .|..|.|-. .+.||||+|.+.+.|..|+....
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccc
Confidence 34456789999999999999999999754 2 255555443 34699999999999999998887
Q ss_pred CccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCC
Q 012923 194 KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273 (453)
Q Consensus 194 ~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 273 (453)
..+.|+.+.+.................. ...................+||++||..+++++++++...||.
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~---------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~ 315 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQ---------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP 315 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhcc---------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc
Confidence 7788888877654432222111100000 0000011111233444579999999999999999999999999
Q ss_pred cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 274 IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 274 i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
+....++.+..+|.++||||.+|.+......|+..|| ..+.+++|.|..|....
T Consensus 316 lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 316 LKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred chhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 9999999999999999999999999999999999999 88999999999997554
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2e-12 Score=123.50 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=77.9
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
+.|||+|+|+.+++++|..+|+..|.|.+++++.|+.||+++||+||+|.+.++|..|++.|| .++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999 9999999999999765
Q ss_pred CC
Q 012923 327 PK 328 (453)
Q Consensus 327 ~~ 328 (453)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=5.5e-12 Score=90.85 Aligned_cols=69 Identities=36% Similarity=0.558 Sum_probs=64.1
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 135 VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 135 V~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
|+|||..+++++|+.+|.+||.|..+++..++.+++++|||||+|.+.++|..|+..++ ..+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 67999999999999999999999999999988788999999999999999999999988 5588888876
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.3e-13 Score=133.56 Aligned_cols=149 Identities=21% Similarity=0.186 Sum_probs=130.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
+...++||.||++.+.+.+|..+|..+|.|..++|......++.+|+|||.|...+++.+||......+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK-------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence 445689999999999999999999999999988887677789999999999999999999999877655541
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
..|||+|+|+..|.+.|+.+|..+|.+++++++..+ .|+
T Consensus 737 ----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gk 775 (881)
T KOG0128|consen 737 ----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGK 775 (881)
T ss_pred ----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccc
Confidence 279999999999999999999999999999988765 799
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
++|.|||.|.+..++.+++.... ..+.-+.+.|....+
T Consensus 776 pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred cccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999999888 666667777766543
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=1.4e-11 Score=89.64 Aligned_cols=73 Identities=33% Similarity=0.546 Sum_probs=67.0
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++++|||+|.+.++|..|+..++ ..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 779999999999999999999999 669999999864
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.2e-11 Score=88.54 Aligned_cols=73 Identities=34% Similarity=0.569 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEe
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQL 205 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~ 205 (453)
+|+|+|||..+++++|+++|..||.|..+.+..++.+ ..+|+|||+|.+.++|..|+..++.. +.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988744 77899999999999999999999965 8999888753
No 103
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-11 Score=115.10 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=71.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccCCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGP 327 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~~~ 327 (453)
.+|||+|||.+++..+|+++|..||.|+...|......++..+||||+|.+..++..||.+.-..|++++|.|.......
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 35999999999999999999999999999888765434555599999999999999999998888999999999887655
Q ss_pred CC
Q 012923 328 KP 329 (453)
Q Consensus 328 ~~ 329 (453)
..
T Consensus 369 ~g 370 (419)
T KOG0116|consen 369 RG 370 (419)
T ss_pred cc
Confidence 44
No 104
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=115.15 Aligned_cols=79 Identities=32% Similarity=0.573 Sum_probs=76.0
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
..+|||+|||+.+|+++|+++|..||.|..|.|..++.+++++|||||+|.+.++|..|+..++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5799999999999999999999999999999999999899999999999999999999999999 999999999999753
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.4e-11 Score=88.45 Aligned_cols=60 Identities=18% Similarity=0.387 Sum_probs=54.3
Q ss_pred HHHHHHHHh----ccCCcceee-eeccCCC--CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 261 PQKLLAFFS----KYGEIEEGP-LGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 261 ~~~l~~~F~----~~G~i~~v~-i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
+++|+++|+ .||.|.+|. |+.++.+ +.++||+||+|.+.++|.+|+..|| ..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777766 9999999999999999999999999 8999999987
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.25 E-value=1.1e-09 Score=107.68 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=73.0
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
....++||||++|+..+++.+|..+|+.||.|.+|.++.. ++||||+..+.++|.+||.+|+ ..+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 3445789999999999999999999999999999999765 8999999999999999999999 89999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
|+.....
T Consensus 491 Wa~g~G~ 497 (894)
T KOG0132|consen 491 WAVGKGP 497 (894)
T ss_pred eeccCCc
Confidence 9976543
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=3.1e-11 Score=82.58 Aligned_cols=55 Identities=33% Similarity=0.606 Sum_probs=49.9
Q ss_pred HHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 264 l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
|+++|++||.|.+|.+.... +++|||+|.+.++|.+|+..|| ..|+|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998763 6899999999999999999999 8899999999986
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=5.2e-12 Score=105.53 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=111.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~ 207 (453)
..+||||.||...++++-|.++|-+.|+|..|.|..++ .++.+ ||||.|.++-++.-|++.+|+. +.++.+.|.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~-- 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL-- 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc--
Confidence 34899999999999999999999999999999887776 67777 9999999999999999999954 7777766644
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEec----CCCCccHHHHHHHHhccCCcceeeeeccC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSN----VGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~l~~~F~~~G~i~~v~i~~d~ 283 (453)
+.++ |...++++.+..+|+..+.|..+++.++.
T Consensus 84 -------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~ 120 (267)
T KOG4454|consen 84 -------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN 120 (267)
T ss_pred -------------------------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccc
Confidence 4444 66678899999999999999999999886
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 284 ATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
. |+.+.++|+.+....+.-.++...
T Consensus 121 d-~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 121 D-GRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred c-CCccCccchhhhhhhcCcHHhhhh
Confidence 4 888999999887666655555543
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.4e-11 Score=107.64 Aligned_cols=88 Identities=14% Similarity=0.242 Sum_probs=80.8
Q ss_pred ccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
.....+.+.|||..|.+-+|.++|.-+|+.||.|.+|.|++|..||.+-.||||+|.+.+++++|.-+|. ..|+.+.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3345566899999999999999999999999999999999999999999999999999999999999998 889999999
Q ss_pred EEEccCCCC
Q 012923 320 CQRAIDGPK 328 (453)
Q Consensus 320 v~~a~~~~~ 328 (453)
|.|+.+-.+
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999876544
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=9.1e-11 Score=84.17 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=53.1
Q ss_pred HHHHHHHHh----ccCCeeEEE-EcccCCC--CCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 144 AETLIDAFK----QYGEIEDCK-AVCDKVS--GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 144 e~~l~~~f~----~~G~i~~v~-i~~d~~~--g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
+++|+++|+ +||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+..|+ ..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999996 7777666 8999999999999999999999988 4589999876
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=7.7e-11 Score=107.91 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=79.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
..++|||++||.++++++|+++|.+||.|..+-++.|..+.+++||+||.|.+.+++.+++...-+.|+++.+.|..+..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999888999999999999986
Q ss_pred CCCCC
Q 012923 209 GPATT 213 (453)
Q Consensus 209 ~~~~~ 213 (453)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 65543
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=3.2e-11 Score=108.91 Aligned_cols=182 Identities=17% Similarity=0.243 Sum_probs=130.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
....+...|..++||+..++.+|..||.-.-...-.+.+.....|+..|+|.|.|.+.+.-..|++...+.+.+|.|.|.
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievY 134 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVY 134 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeee
Confidence 34445567889999999999999999985533333344444447788899999999999999999999999999999998
Q ss_pred ecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccC----Ccceeeee
Q 012923 205 LASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG----EIEEGPLG 280 (453)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G----~i~~v~i~ 280 (453)
.+............. .....-......-.|.+++||+++|+.+|.+||.+.. ..+.|-++
T Consensus 135 ka~ge~f~~iagg~s----------------~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTS----------------NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred ccCchhheEecCCcc----------------ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 775433221000000 0000000111223678899999999999999997432 34456555
Q ss_pred ccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 281 IDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 281 ~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
+. ..|+..|-|||.|...++|..||.+....|+-|.|.|.++
T Consensus 199 ~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 199 TR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred EC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 53 4799999999999999999999998777677777766544
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.3e-11 Score=103.63 Aligned_cols=87 Identities=25% Similarity=0.391 Sum_probs=79.4
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeE
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~ 202 (453)
....++.|+|||..||.+..+.+|...|-+||.|.+.+++.|+.|..+|.|+||.|.++.+|+.||..+|+. |.=+.|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 456788999999999999999999999999999999999999999999999999999999999999999965 7777888
Q ss_pred EEecccCC
Q 012923 203 CQLASIGP 210 (453)
Q Consensus 203 v~~~~~~~ 210 (453)
|.+...+.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 88765443
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.6e-10 Score=103.34 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=76.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v 203 (453)
+..+....|||..|.+-+|.+||.-+|+.||.|.+|.||+|..||.+.-||||+|.+.+++++|.-.|.. .|..|.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 4445667899999999999999999999999999999999999999999999999999999999987774 589999999
Q ss_pred Eeccc
Q 012923 204 QLASI 208 (453)
Q Consensus 204 ~~~~~ 208 (453)
.++.+
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 98753
No 115
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=5.5e-11 Score=103.73 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=67.1
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
+|||+|||..+++.+|+.+|++||+|+.|.|++ .|+||+.++...|..||..|| .+|+|..|.|+.++++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 799999999999999999999999999999984 599999999999999999999 89999999999998773
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.13 E-value=6.4e-11 Score=101.42 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=131.3
Q ss_pred CCCcCeEEEcCCCCCCCHHH-H--HHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeE
Q 012923 127 DPVHRKIFVHGLGWDTKAET-L--IDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~-l--~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~ 202 (453)
.+....+|+.++-..+..+- | ...|+.+-.+...+++++. .+..++++|+.|.....-.++-..-++ ++.-+.|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCccee
Confidence 35566788888877776665 3 5777777777777778777 678889999999988777777665553 34444444
Q ss_pred EEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeecc
Q 012923 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (453)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d 282 (453)
+......... .........-+||.+.|...++.+.|-..|.+|-.....++++|
T Consensus 172 ~a~gtswedP--------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd 225 (290)
T KOG0226|consen 172 LAAGTSWEDP--------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD 225 (290)
T ss_pred eccccccCCc--------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccc
Confidence 4333221111 01122233459999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
+.||+++||+||.|.+..++..|++.|+ ..++.|+|+++...-
T Consensus 226 kRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 226 KRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 9999999999999999999999999999 888999998866543
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.12 E-value=2.4e-09 Score=95.67 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=66.2
Q ss_pred cEEEEecCCCCccHHHHHHHHhccC--CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
.++||+||-|.+|+++|.+.+...| .|..++++.++..|.+||||+|...+..+..+.+..|- ++|.|+.-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4999999999999999999888776 47788888999999999999999999999999999999 8898876555433
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=3.6e-10 Score=77.29 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=48.4
Q ss_pred HHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 147 LIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 147 l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
|+++|++||.|..|.+..+. +++|||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987654 6899999999999999999888 4599999999875
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=2.3e-10 Score=95.36 Aligned_cols=81 Identities=19% Similarity=0.406 Sum_probs=73.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEec
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQLA 206 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~-G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~ 206 (453)
...-+||..||.-+.+..|..+|.+| |.|..+++.+++.||.|+|||||+|.+.+.|.-|.+.||.. |.++.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34579999999999999999999999 88999999999999999999999999999999999999976 78889999887
Q ss_pred ccC
Q 012923 207 SIG 209 (453)
Q Consensus 207 ~~~ 209 (453)
...
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 543
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.04 E-value=1.3e-08 Score=92.12 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=132.1
Q ss_pred CCcCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 128 PVHRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp-~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
...+.+.|.+|. -.++-+.|..+|..||.|..|++++.+ .|.|.|++.+..++++|+..||. .+.|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 456889999998 456777899999999999999999876 46899999999999999999985 48999999988
Q ss_pred cccCCCCCCCcCcccccccc---ccccc--ccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCC-cceeee
Q 012923 206 ASIGPATTPAVASTATHQHQ---HQHQH--QHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPL 279 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i 279 (453)
+.......-........... ..... ...............++++|+.-|.|..+||+.|..+|...+. ..+|+|
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkv 439 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKV 439 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEe
Confidence 75332221100000000000 00000 0000111111233445679999999999999999999986653 456777
Q ss_pred eccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC----eEEEEEEccCCC
Q 012923 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG----HILNCQRAIDGP 327 (453)
Q Consensus 280 ~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g----~~l~v~~a~~~~ 327 (453)
+.-+ +-+ .--+.++|++.++|..||.++| ..|.+ -+..++|+.+.+
T Consensus 440 Fp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 440 FPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 6654 333 2347899999999999999999 55544 345666665544
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.03 E-value=7.1e-10 Score=92.50 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=73.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhcc-CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
.....++|..+|..+.+..|..+|.+| |.|+.+++-|.+.||.|||||||+|.+.+.|.-|-+.|| .-|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334589999999999999999999998 778888888999999999999999999999999999999 778899999988
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 643
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.9e-10 Score=114.76 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=130.4
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v 203 (453)
++...++|||++||+..+++.+|+..|..+|.|.+|.|.+-+ .+.-.-||||.|.+...+-.|+..+... |....+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 556778999999999999999999999999999999987654 4455569999999999999998877744 33333333
Q ss_pred EecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC
Q 012923 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~ 283 (453)
.+... .....+.|+|++|..++....|...|..||.|..|.+-..
T Consensus 446 glG~~----------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg- 490 (975)
T KOG0112|consen 446 GLGQP----------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG- 490 (975)
T ss_pred ccccc----------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-
Confidence 33321 1223468999999999999999999999999999877332
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEccCCCC
Q 012923 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRAIDGPK 328 (453)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a~~~~~ 328 (453)
.-|+||.|.+...|..|+..+. .-|++ +.|.|.++.....
T Consensus 491 -----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 491 -----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred -----CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 4599999999999999999988 66765 6788988865443
No 123
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.00 E-value=1e-09 Score=93.17 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=71.6
Q ss_pred cEEEEecCCCCccHHHHHH----HHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 248 RKIFVSNVGSELEPQKLLA----FFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
.||||.||+..+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|..|+..|+ .-|.|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999998 999999999998864 67889999999999999999999999 889999999999
Q ss_pred ccCCCC
Q 012923 323 AIDGPK 328 (453)
Q Consensus 323 a~~~~~ 328 (453)
|.+...
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 987644
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=97.90 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=69.9
Q ss_pred ccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC--CccCCeEE
Q 012923 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHIL 318 (453)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~l~g~~l 318 (453)
+.....-++|||++|-..+++.+|+.+|.+||.|..|+++.. +++|||+|.+..+|+.|....- ..|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 334445579999999999999999999999999999999875 6799999999999999998765 77899999
Q ss_pred EEEEccC
Q 012923 319 NCQRAID 325 (453)
Q Consensus 319 ~v~~a~~ 325 (453)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999865
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.96 E-value=2e-09 Score=104.46 Aligned_cols=195 Identities=9% Similarity=-0.022 Sum_probs=139.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
.+.+.|-+.+.++++...|+++||... .|..+.|..+...+...|-++|.|....++++|++..+..+..|.+.+....
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 456778889999999999999999754 4666677777756666899999999999999999998888888888887765
Q ss_pred cCCCCCCCcCc-ccccccccccc------cccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcce-eee
Q 012923 208 IGPATTPAVAS-TATHQHQHQHQ------HQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPL 279 (453)
Q Consensus 208 ~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i 279 (453)
........... ........+.. ...................+|||..||..++..++..+|...-.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 43322111111 00000000000 00011111123345556789999999999999999999998878887 555
Q ss_pred eccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 280 ~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.+ .-+++.++.|||.|...+++.+|+...+ +.++.|.|+|.-..
T Consensus 468 t~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 468 TR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cc-CCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 44 4578889999999999999999988887 77888889886543
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.5e-09 Score=95.95 Aligned_cols=79 Identities=27% Similarity=0.390 Sum_probs=69.1
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC--CccCCeEe
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ--KKIGNRMT 201 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~--~~~~gr~~ 201 (453)
.-.+...++|||++|-..+++.+|+++|.+||+|+.|+++... ++|||+|.+..+|+.|.+..- ..|.|+.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3455667899999999999999999999999999999988653 599999999999999998755 34899999
Q ss_pred EEEeccc
Q 012923 202 ACQLASI 208 (453)
Q Consensus 202 ~v~~~~~ 208 (453)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999875
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=2.6e-09 Score=101.36 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=76.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||.+|...+...||+.+|++||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||..|+ ..|.||.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3457899999999999999999999999999999999998887889999999999999999999999 559999999998
Q ss_pred cccCC
Q 012923 206 ASIGP 210 (453)
Q Consensus 206 ~~~~~ 210 (453)
+...+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 86433
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.89 E-value=3.7e-09 Score=100.38 Aligned_cols=83 Identities=20% Similarity=0.382 Sum_probs=76.1
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....+.|||.+|...+-..+|+.+|++||.|+-.+|+.+..+-..++|+||++.+.++|.+||..|+ ..|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4456899999999999999999999999999999999887776779999999999999999999999 899999999999
Q ss_pred ccCC
Q 012923 323 AIDG 326 (453)
Q Consensus 323 a~~~ 326 (453)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8754
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=2.8e-08 Score=94.94 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=109.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
..+...++|+|-|||..+++++|+.+|+.||+|+.|+.- -..+|.+||+|.+..+|+.|++.++ ..|.|+.|..
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 345567899999999999999999999999999997643 3457899999999999999999999 5588888772
Q ss_pred EecccCCCCCCCcCccccccccccccccccccccccccccccc-ccEEEEecCCCCccHHHHHHHHhccCCcceeeeecc
Q 012923 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYT-QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d 282 (453)
......... .+.......+............+ ...+|+- |++..+...++.+|+-+|.+.. +.
T Consensus 145 ~~~~~~~~~-----------~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~--- 208 (549)
T KOG4660|consen 145 PGGARRAMG-----------LQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE--- 208 (549)
T ss_pred CCcccccch-----------hcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc---
Confidence 211111000 00000111111111111111111 2234433 9998888888888888887765 32
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 283 KATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
++.-+-.-|+.|.+..++..++..+...+.+....+.+.
T Consensus 209 --~~~~~hq~~~~~~~~~s~a~~~~~~G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 209 --TPLLNHQRFVEFADNRSYAFSEPRGGFLISNSSGVITFS 247 (549)
T ss_pred --ccchhhhhhhhhccccchhhcccCCceecCCCCceEEec
Confidence 222233567888888888555553323344444444443
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.80 E-value=4e-09 Score=95.85 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=124.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC---CCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~---g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
..|.|-||.+.+|.+.|..||.-.|.|.+++|+.+... ......|||.|.+...+..|....|..+-++.|.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37999999999999999999999999999999764322 234568999999999999999999988888988887765
Q ss_pred cCCCCCCCc-----------------Cccccccccccc-cccccccc-ccc-----cccccccccEEEEecCCCCccHHH
Q 012923 208 IGPATTPAV-----------------ASTATHQHQHQH-QHQHQHQH-QQH-----HQQSEYTQRKIFVSNVGSELEPQK 263 (453)
Q Consensus 208 ~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~l~V~nLp~~~t~~~ 263 (453)
........+ ............ +...+... +.. ........++|+|.+|+..|...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 443321100 000000000000 00000000 000 011111237899999999999999
Q ss_pred HHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCcc
Q 012923 264 LLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNF 313 (453)
Q Consensus 264 l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l 313 (453)
+.++|..+|.|...++.- +...-+|.|.|....+...|+..++..+
T Consensus 168 ~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred hhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 999999999999887743 3335678899999999999999888443
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=4e-08 Score=86.53 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~ 204 (453)
.+....+|+|.|||+.++..||+++|..||.+..+-|-.++ +|.+.|.|-|.|...++|..|++.++.. +.|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34455789999999999999999999999999999888888 9999999999999999999999999965 899998888
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
......
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 765443
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.74 E-value=2e-08 Score=95.74 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=68.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
..+|||+|||++++..+|+++|..||.|+...|......++...||||+|.+.++++.||.+....|.+++|.|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 446999999999999999999999999999988765434555589999999999999999998778999999998753
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.71 E-value=4.3e-08 Score=86.38 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=72.9
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
...+|+|.||++.+++++|+++|..||.+..+-|..++ .|++.|.|-|.|...++|.+|++.++ ..|+|+.|.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34689999999999999999999999998888887764 89999999999999999999999999 88999999998876
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
+.
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 44
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=5.6e-08 Score=86.03 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=76.7
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....+.+||+|+.+.+|.++|...|+.||.|..|.|+.|+.++.+|||+||+|.+.+.+..|+. |+ ..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 33455699999999999999999999999999999999999999999999999999999999999 77 89999999999
Q ss_pred EccCC
Q 012923 322 RAIDG 326 (453)
Q Consensus 322 ~a~~~ 326 (453)
+...+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98766
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=1.5e-07 Score=70.69 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c----CCeEeEE
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I----GNRMTAC 203 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~--~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~----~gr~~~v 203 (453)
+||.|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|.+..+..++. + ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999998865 356777889999989999999999999999999999988743 3 3455566
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 136
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=78.84 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=71.0
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeee-ccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC---CeEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG-IDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNC 320 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~---g~~l~v 320 (453)
..+||||.+||.++...+|..+|..|-..+...|- .++....++-+|||+|.+.++|.+|+.+|| ..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998766655442 222223346799999999999999999999 6664 688999
Q ss_pred EEccCCCCCCCCCC
Q 012923 321 QRAIDGPKPGKSRH 334 (453)
Q Consensus 321 ~~a~~~~~~~~~~~ 334 (453)
.+++++.+..+.+.
T Consensus 113 ElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKG 126 (284)
T ss_pred eehhcCcccccCCC
Confidence 99998887665543
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.62 E-value=9.6e-07 Score=86.36 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~-v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
...-.|||..||..+++.++.++|...-.|++ |.|.+-+ +++.++.|||.|..++++.+|+..-. ..+..|.|+|+.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 33568999999999999999999998888887 6665555 88899999999999888888887666 457888888876
Q ss_pred cc
Q 012923 206 AS 207 (453)
Q Consensus 206 ~~ 207 (453)
..
T Consensus 511 i~ 512 (944)
T KOG4307|consen 511 IA 512 (944)
T ss_pred hh
Confidence 64
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=4.5e-08 Score=84.22 Aligned_cols=82 Identities=32% Similarity=0.534 Sum_probs=72.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~ 204 (453)
-+.+..+||++.|..+++.+-|...|.+|-.....++++|+.|++++||+||.|.++.++..|+..+++. +..|.|.+.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3445678999999999999999999999999999999999999999999999999999999999999954 777777665
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
.+.
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 443
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=1.1e-07 Score=85.50 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=72.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcc--------eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH 316 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~ 316 (453)
..+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|..||-|.|.|...+++..||..|+ ..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345799999999999999999999999886 47888875 59999999999999999999999999 899999
Q ss_pred EEEEEEccCC
Q 012923 317 ILNCQRAIDG 326 (453)
Q Consensus 317 ~l~v~~a~~~ 326 (453)
.|+|..|.-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999999643
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=1.2e-07 Score=83.88 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=76.8
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEE
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v 203 (453)
.....+.+.|||+|+.+.+|.++|...|+-||.|..+.|..|+.++.++|||||+|.+.+.+..|+......|.++.+.|
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEV 174 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccccee
Confidence 34566778999999999999999999999999999999999999989999999999999999999995447799999999
Q ss_pred Eeccc
Q 012923 204 QLASI 208 (453)
Q Consensus 204 ~~~~~ 208 (453)
.+...
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 88753
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=1.8e-08 Score=92.48 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=116.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc--cCCeEeEEEecccC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASIG 209 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~--~~gr~~~v~~~~~~ 209 (453)
.|||+||.+.++..+|..+|...- +.....--...|||||.+.+...|.+|++.+++. +.|..+.|.....+
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 699999999999999999997541 1111000022479999999999999999999954 78888888776533
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeee-ccCCCCCC
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLG-IDKATGKP 288 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~d~~~g~~ 288 (453)
.. ..+.+-|+|+|....++.|..++..||.+..|..+ .+..
T Consensus 77 kq----------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---- 118 (584)
T KOG2193|consen 77 KQ----------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---- 118 (584)
T ss_pred HH----------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----
Confidence 22 12468999999999999999999999999988653 3322
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.-..-|+|.+.+.+..||..++ ..|....++|.|.-.
T Consensus 119 tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 119 TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 2234478999999999999999 888888999988643
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.49 E-value=7.4e-06 Score=73.82 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=65.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G--~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
-....+||+||-|.+|.+||.+.+...| .|.+++++.++.+|.+||||+|...+..++++.++.|- +.|+|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3445799999999999999999998777 57888999999999999999999999999999999887 44776654443
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1e-07 Score=91.13 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=64.1
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
.....+|+|-|||..++.++|+.+|+.||+|+.|+.-+ ..+|.+||+|-+..+|.+|++.|+ ..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44567999999999999999999999999999976644 348999999999999999999999 889999887
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.46 E-value=5.3e-07 Score=82.03 Aligned_cols=87 Identities=28% Similarity=0.303 Sum_probs=78.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcc--------eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~ 314 (453)
.....+|||-+||..+++++|..+|.++|.|. .|.|.++++|+++||-|.|.|.+...|+.||..++ ..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44556999999999999999999999999885 57788999999999999999999999999999999 8899
Q ss_pred CeEEEEEEccCCCCCC
Q 012923 315 GHILNCQRAIDGPKPG 330 (453)
Q Consensus 315 g~~l~v~~a~~~~~~~ 330 (453)
+.+|+|.+|..++...
T Consensus 143 gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVE 158 (351)
T ss_pred CCCchhhhhhhccCcc
Confidence 9999999998776543
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=3.7e-07 Score=89.41 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=73.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC---CCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTA 202 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~---g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~ 202 (453)
++..++|||+||++.++++.|...|..||+|..|+|+.-+.. .+.+-|+||.|-+..+|++|++.|++. +..+.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 677889999999999999999999999999999999876532 345679999999999999999999965 7888999
Q ss_pred EEecccCCC
Q 012923 203 CQLASIGPA 211 (453)
Q Consensus 203 v~~~~~~~~ 211 (453)
+.|+..-+.
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 888854433
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.41 E-value=1.9e-06 Score=64.75 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=65.5
Q ss_pred cEEEEecCCCCccHHHHHHHHhcc--CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC----CeEEEE
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE----GHILNC 320 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~----g~~l~v 320 (453)
+||.|+|||...|.++|.+++... |...-+-++.|..++.+.|||||.|.+++.|.+-....+ ..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 599999999999999999988753 566678888888889999999999999999999998887 4443 466778
Q ss_pred EEccC
Q 012923 321 QRAID 325 (453)
Q Consensus 321 ~~a~~ 325 (453)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77754
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=2e-07 Score=78.51 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=67.9
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.++|||.||...++++.|.++|-+.|.|..|.|..++ .++.| ||||.|.+.-++.-|+..+| ..|.++.|.|.+-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3699999999999999999999999999999998775 45667 99999999999999999999 88888888877653
No 148
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=7.6e-07 Score=76.74 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=63.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..++ ..|.+-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 379999999999999999999999999998873 6799999999999999999999 888888888888753
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=5.7e-08 Score=97.17 Aligned_cols=164 Identities=20% Similarity=0.158 Sum_probs=126.7
Q ss_pred cCeEEEcCCCCCCCHH-HHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAE-TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~-~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
.+.+.+.|+-+..... .++..|..+|.|+.|++......-..-.+.++.+....+++.|.....+.+.++.+.|..+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3567777887776655 678899999999999876633222222389999999999999999888889998888888765
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
.......... +.......++||+||+..+.+.+|...|..+|.|..++|.....+++.
T Consensus 651 ~~~~~~~kvs----------------------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~ 708 (881)
T KOG0128|consen 651 EEKEENFKVS----------------------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRF 708 (881)
T ss_pred hhhhhccCcC----------------------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccc
Confidence 5432211111 111123358999999999999999999999999998888766778999
Q ss_pred ceEEEEEECCHHHHHHHHHcCCCccCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPHKNFEG 315 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~~~l~g 315 (453)
+|+|||.|...+++.+||......+.|
T Consensus 709 rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 709 RGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred ccceeeEeecCCchhhhhhhhhhhhhh
Confidence 999999999999999999988854555
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.21 E-value=2.4e-06 Score=83.96 Aligned_cols=84 Identities=13% Similarity=0.225 Sum_probs=73.9
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC---CCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK---ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~---~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
...++.|||+||++.++++.|...|..||.|..|+|+..+ +..+.+.|+||-|.+..+|.+|++.|+ ..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4556899999999999999999999999999999998655 335568899999999999999999999 888999999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
+.|.+.-+
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99985543
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=1.8e-06 Score=78.66 Aligned_cols=83 Identities=24% Similarity=0.244 Sum_probs=73.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCC
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN 198 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~g 198 (453)
...-+|||.+||..+++++|.++|.+||.|. .|+|.+|+.|++.||-|.|.|.+...|+.|+..+. ..+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4456899999999999999999999999875 47788999999999999999999999999999988 55999
Q ss_pred eEeEEEecccCC
Q 012923 199 RMTACQLASIGP 210 (453)
Q Consensus 199 r~~~v~~~~~~~ 210 (453)
.+|.|.++...+
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999988876544
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=6.7e-06 Score=63.51 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=43.9
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C-----ccCCeEEEEE
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K-----NFEGHILNCQ 321 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~-----~l~g~~l~v~ 321 (453)
..|+|.++...++.++|+++|+.||.|..|.+.+. -..|||.|.+.++|.+|+..+. . .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47999999999999999999999999999998765 3369999999999999998766 3 4555555544
Q ss_pred E
Q 012923 322 R 322 (453)
Q Consensus 322 ~ 322 (453)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.07 E-value=2.1e-06 Score=74.24 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC--------CCcce----EEEEEEccHHHHHHHHHcCCCc-cC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS--------GKSKG----YGFILFKTRSGARKALKEPQKK-IG 197 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~--------g~~~G----~afV~f~~~~~a~~A~~~~~~~-~~ 197 (453)
-.|||.+||+.+...-|+++|+.||.|-.|.|.....+ |.++. -++|+|.+...|..+...||+. |.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999988765544 23322 3789999999999999998855 77
Q ss_pred CeEe
Q 012923 198 NRMT 201 (453)
Q Consensus 198 gr~~ 201 (453)
|+.-
T Consensus 155 gkk~ 158 (278)
T KOG3152|consen 155 GKKK 158 (278)
T ss_pred CCCC
Confidence 7653
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.05 E-value=1.8e-05 Score=56.44 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=46.9
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEEE
Q 012923 131 RKIFVHGLGWDTKAETL----IDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTACQ 204 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l----~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~ 204 (453)
..|||.|||.+.+...| +.++.-|| .|..|. .+.|+|.|.+.+.|.+|++.|.+. +.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999987755 46666786 566652 246999999999999999999865 899999999
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=1.9e-05 Score=56.40 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=46.4
Q ss_pred cEEEEecCCCCccHHH----HHHHHhccC-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 248 RKIFVSNVGSELEPQK----LLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~----l~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
..|+|.|||...+... |++++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+ ..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999988765 456777776 455541 4579999999999999999999 77899999999
Q ss_pred Ecc
Q 012923 322 RAI 324 (453)
Q Consensus 322 ~a~ 324 (453)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 156
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.86 E-value=1e-05 Score=74.39 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=71.8
Q ss_pred CeEE-EcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecccC
Q 012923 131 RKIF-VHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lf-V~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~ 209 (453)
.++| |++|++.+++++|+.+|..+|.|..+++..+..++.++|||||.|.+...+..++..-...+.++.+.+......
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999998336688888988887654
Q ss_pred CC
Q 012923 210 PA 211 (453)
Q Consensus 210 ~~ 211 (453)
+.
T Consensus 265 ~~ 266 (285)
T KOG4210|consen 265 PK 266 (285)
T ss_pred cc
Confidence 43
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.80 E-value=4e-05 Score=59.20 Aligned_cols=57 Identities=32% Similarity=0.453 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
+.|+|.+++..++.++|+++|+.||.|..|.+.+... .|||.|.+.+.|+.|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHH
Confidence 4689999999999999999999999999998776442 69999999999999998754
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.77 E-value=3.3e-05 Score=71.82 Aligned_cols=66 Identities=27% Similarity=0.333 Sum_probs=56.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeecc---CCC--CCC--------ceEEEEEECCHHHHHHHHHcCC
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID---KAT--GKP--------KGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d---~~~--g~~--------kg~afV~F~~~~~A~~Al~~~~ 310 (453)
...++|.+-|||.+-.-+.|.++|..||.|..|+|... +.. +.+ +-+|||+|...+.|.+|.+.+|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 45679999999999999999999999999999999875 322 222 4579999999999999999997
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.73 E-value=8.1e-05 Score=49.52 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=42.8
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHH
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKAL 306 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al 306 (453)
+.|.|.+.+....+. |..+|..||.|..+.+... +.+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 478999998877755 5558889999999988522 568999999999999986
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00039 Score=60.60 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=74.3
Q ss_pred HHHHHHHcCCC-ccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHH
Q 012923 184 GARKALKEPQK-KIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQ 262 (453)
Q Consensus 184 ~a~~A~~~~~~-~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 262 (453)
-|..|-..|.. ...++.++|.++.. ..|+|.||...++.+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~snd 46 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASND 46 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhhH
Confidence 35556666664 47899999999852 379999999999999
Q ss_pred HHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 263 KLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 263 ~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
.|.+.|+.||.|....++.| ..++..+-++|.|...-.|.+|+..++
T Consensus 47 ll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 47 LLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred HHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 99999999999998877776 478889999999999999999999986
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00019 Score=47.76 Aligned_cols=52 Identities=31% Similarity=0.445 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHH
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKAL 189 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~ 189 (453)
+.|-|.+.+.+..+ .|..+|..||+|..+.+-. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57889999988775 5556999999999988662 2338999999999999986
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.44 E-value=0.00031 Score=63.38 Aligned_cols=81 Identities=15% Similarity=0.353 Sum_probs=63.0
Q ss_pred cccEEEEecCCCCccHHH----H--HHHHhccCCcceeeeeccCCCCCC-ceE--EEEEECCHHHHHHHHHcCC-CccCC
Q 012923 246 TQRKIFVSNVGSELEPQK----L--LAFFSKYGEIEEGPLGIDKATGKP-KGF--CLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~----l--~~~F~~~G~i~~v~i~~d~~~g~~-kg~--afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
...-+||-+|++.+-.++ | .++|.+||.|..|.|-+...+..+ .+. .||+|.+.++|.+||...+ ..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999998876665 2 379999999999988665422222 222 4999999999999999999 88999
Q ss_pred eEEEEEEccCC
Q 012923 316 HILNCQRAIDG 326 (453)
Q Consensus 316 ~~l~v~~a~~~ 326 (453)
|.|++.+...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887643
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.40 E-value=0.00083 Score=51.00 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=51.2
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceee-eeccC------CCCCCceEEEEEECCHHHHHHHHHcCCCccCCe-EE
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP-LGIDK------ATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGH-IL 318 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-i~~d~------~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~-~l 318 (453)
.+.|.|-+.|... ...|.+.|++||.|.+.. +.++. ..-....+..|+|.++.+|.+||......|.|. .+
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 3579999999884 456777899999998875 11110 001225689999999999999999988778775 55
Q ss_pred EEEEcc
Q 012923 319 NCQRAI 324 (453)
Q Consensus 319 ~v~~a~ 324 (453)
-|.++.
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577763
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00044 Score=66.78 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=61.1
Q ss_pred ccEEEEecCCCCc------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc-CCeEE
Q 012923 247 QRKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-EGHIL 318 (453)
Q Consensus 247 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l-~g~~l 318 (453)
..+|+|-|+|.-- -..-|..+|+++|+|+.+.++.+...| ++||.|++|.+..+|..|++.+| +.| ..+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3589999998532 234567899999999999998886554 89999999999999999999999 555 45777
Q ss_pred EEEEc
Q 012923 319 NCQRA 323 (453)
Q Consensus 319 ~v~~a 323 (453)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77554
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00022 Score=66.51 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=58.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccc---CCC--CC--------cceEEEEEEccHHHHHHHHHc
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD---KVS--GK--------SKGYGFILFKTRSGARKALKE 191 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d---~~~--g~--------~~G~afV~f~~~~~a~~A~~~ 191 (453)
..+..+++|.+-|||.+-.-+.|.++|..||.|..|+|+.- +.+ +. .+-+|||+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 44467999999999999999999999999999999998765 222 11 245799999999999999999
Q ss_pred CCC
Q 012923 192 PQK 194 (453)
Q Consensus 192 ~~~ 194 (453)
++.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 873
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.19 E-value=0.0013 Score=59.52 Aligned_cols=76 Identities=18% Similarity=0.334 Sum_probs=57.2
Q ss_pred eEEEcCCCCCCCHHHH------HHHHhccCCeeEEEEcccCCC-CCcceEE--EEEEccHHHHHHHHHcCCCc-cCCeEe
Q 012923 132 KIFVHGLGWDTKAETL------IDAFKQYGEIEDCKAVCDKVS-GKSKGYG--FILFKTRSGARKALKEPQKK-IGNRMT 201 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l------~~~f~~~G~i~~v~i~~d~~~-g~~~G~a--fV~f~~~~~a~~A~~~~~~~-~~gr~~ 201 (453)
-|||-+||+.+..+++ .++|.+||.|..|.|-+...+ ....+.+ ||+|.+.++|..||....+. +.||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 5899999988876662 279999999988865443211 1122333 99999999999999999855 899999
Q ss_pred EEEecc
Q 012923 202 ACQLAS 207 (453)
Q Consensus 202 ~v~~~~ 207 (453)
+..+..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 987764
No 167
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0013 Score=63.16 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC----CccCCeEeE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ----KKIGNRMTA 202 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~-~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~----~~~~gr~~~ 202 (453)
...+|||||+||.-+|.++|..+|. -||-|..+-|=+|+.-+-.+|-|-|+|.+..+-.+||.+-- +.-..++|.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVE 447 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVE 447 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeee
Confidence 4468999999999999999999999 79999999999997788899999999999999999998632 222233555
Q ss_pred EEec
Q 012923 203 CQLA 206 (453)
Q Consensus 203 v~~~ 206 (453)
|+..
T Consensus 448 IkPY 451 (520)
T KOG0129|consen 448 IKPY 451 (520)
T ss_pred ecce
Confidence 5544
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.13 E-value=0.003 Score=48.00 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=51.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccC-------CCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeE
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-------VSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~-------~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~ 202 (453)
.+.|.|-+.|.. ....|.++|++||.|.+..-+... ..........|+|.++.+|.+||..+...|.|..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467999999998 556788999999999887511110 011233489999999999999999988888776544
Q ss_pred -EEec
Q 012923 203 -CQLA 206 (453)
Q Consensus 203 -v~~~ 206 (453)
|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 5554
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.12 E-value=0.00025 Score=61.72 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=58.8
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC--------CCCceE----EEEEECCHHHHHHHHHcCC-CccCC
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT--------GKPKGF----CLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~--------g~~kg~----afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
.|||.+||+.+....|+++|+.||.|-+|.|-....+ |..+.+ ++|+|.+...|..+...|| ..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 8999999999999999999999999999988765544 333332 7799999999999999999 77888
Q ss_pred eE
Q 012923 316 HI 317 (453)
Q Consensus 316 ~~ 317 (453)
++
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 65
No 170
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.08 E-value=0.00096 Score=61.58 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=67.1
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCC---CCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA---TGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~---~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~ 324 (453)
..|.|.||.+.+|.++++.+|.-.|.|..++|+.... -....-.|||.|.+...+..|-.+.|..|-++.|.|..+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 3899999999999999999999999999999876332 1233568999999999999999888877778888887765
Q ss_pred CCCCC
Q 012923 325 DGPKP 329 (453)
Q Consensus 325 ~~~~~ 329 (453)
..+.+
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 54433
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.06 E-value=0.0019 Score=62.99 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=63.9
Q ss_pred cccccccccEEEEecCCCCccHHHHHHHHh-ccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc---C
Q 012923 240 HQQSEYTQRKIFVSNVGSELEPQKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---E 314 (453)
Q Consensus 240 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l---~ 314 (453)
.+.....++.|+|.||-..+|.-+|+.++. .+|.|+.+.| |+ -|..|||.|.+.++|...+.+|| ..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 344666778999999999999999999999 6677777733 22 26679999999999999999998 333 6
Q ss_pred CeEEEEEEccC
Q 012923 315 GHILNCQRAID 325 (453)
Q Consensus 315 g~~l~v~~a~~ 325 (453)
.+.|.+.|...
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 68888888753
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0026 Score=61.64 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=57.9
Q ss_pred CeEEEcCCCCCC--CHH----HHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c-CCeEeE
Q 012923 131 RKIFVHGLGWDT--KAE----TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-GNRMTA 202 (453)
Q Consensus 131 ~~lfV~nLp~~~--te~----~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~-~gr~~~ 202 (453)
..|+|-|+|.-- ..+ -|..+|+++|+|..+.+..+. .|.++||.|++|.+..+|+.|++.+++. | ......
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 579999998432 222 455789999999999998888 4559999999999999999999999854 3 444555
Q ss_pred EEe
Q 012923 203 CQL 205 (453)
Q Consensus 203 v~~ 205 (453)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 544
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.00 E-value=0.0017 Score=57.73 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=57.9
Q ss_pred cEEEEecCC--CCc---cHHHHHHHHhccCCcceeeeeccCCCCCCc-eEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 248 RKIFVSNVG--SEL---EPQKLLAFFSKYGEIEEGPLGIDKATGKPK-GFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 248 ~~l~V~nLp--~~~---t~~~l~~~F~~~G~i~~v~i~~d~~~g~~k-g~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
+.|.++|+- -.+ -++++++-+++||.|.+|.|+..+..-... --.||+|...++|.+|+-.|| .+|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 346666652 223 346788999999999999888765322221 238999999999999999999 8999999887
Q ss_pred EEcc
Q 012923 321 QRAI 324 (453)
Q Consensus 321 ~~a~ 324 (453)
.|..
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 7653
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.97 E-value=0.0011 Score=64.50 Aligned_cols=76 Identities=8% Similarity=0.044 Sum_probs=60.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHh-ccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c---CCeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---GNRM 200 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~-~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~---~gr~ 200 (453)
....+..|||.||-.-+|.-.|+.++. .+|.|.+.+|=+- +-.|||.|.+.++|.+-..+|++. + +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345567899999999999999999998 6777887754332 336999999999999999998854 2 5677
Q ss_pred eEEEecc
Q 012923 201 TACQLAS 207 (453)
Q Consensus 201 ~~v~~~~ 207 (453)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8777765
No 175
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.93 E-value=0.003 Score=63.63 Aligned_cols=7 Identities=29% Similarity=0.306 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012923 184 GARKALK 190 (453)
Q Consensus 184 ~a~~A~~ 190 (453)
.+.+||+
T Consensus 211 eiIrClk 217 (1102)
T KOG1924|consen 211 EIIRCLK 217 (1102)
T ss_pred HHHHHHH
Confidence 3333333
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.91 E-value=0.0064 Score=49.12 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=53.0
Q ss_pred cccEEEEecCC-----CCccH----HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCe
Q 012923 246 TQRKIFVSNVG-----SELEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGH 316 (453)
Q Consensus 246 ~~~~l~V~nLp-----~~~t~----~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~ 316 (453)
+..||.|.-+. ..... .+|.+.|..||.|.-||++-+ .-+|+|.+-++|.+|+.....+++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 33477777555 12223 366788999999998888755 37899999999999999988999999
Q ss_pred EEEEEEccCCC
Q 012923 317 ILNCQRAIDGP 327 (453)
Q Consensus 317 ~l~v~~a~~~~ 327 (453)
.|.|+...+..
T Consensus 98 ~l~i~LKtpdW 108 (146)
T PF08952_consen 98 TLKIRLKTPDW 108 (146)
T ss_dssp EEEEEE-----
T ss_pred EEEEEeCCccH
Confidence 99999986543
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.74 E-value=0.00072 Score=59.15 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=49.9
Q ss_pred HHHHHHHh-ccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 262 QKLLAFFS-KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 262 ~~l~~~F~-~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
++|...|+ +||.|+.+.|-.+. .-.-+|-+||.|...++|.+|+..|| .+|.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 89999998765432 22338889999999999999999999 99999999998874
No 178
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.71 E-value=0.0089 Score=61.95 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.2
Q ss_pred cceEEEEEEccHHHHHHHHHcCCCccCCeEe
Q 012923 171 SKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (453)
Q Consensus 171 ~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~ 201 (453)
-+||-||+=....++..||+-+.....++.+
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~~~~ 239 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYANRIL 239 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheeccEE
Confidence 5799999999999999999877654433333
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.71 E-value=0.013 Score=39.88 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=44.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhcc---CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKY---GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
..|+|+++ ..++.++|+.+|..| ....+|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 48999999 558888999999998 235578887774 3789999999999999875
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.62 E-value=0.012 Score=46.76 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=60.5
Q ss_pred CCCCCcCeEEEcCCCCCCC-HHH---HHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeE
Q 012923 125 DEDPVHRKIFVHGLGWDTK-AET---LIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~t-e~~---l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~ 200 (453)
..++.-.||.|+-|..++. .+| |...++.||+|.+|.+.- +--|.|.|.+..+|-+|+.+++....|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCce
Confidence 4467778999998887774 334 445678899999996542 22599999999999999999999899999
Q ss_pred eEEEecc
Q 012923 201 TACQLAS 207 (453)
Q Consensus 201 ~~v~~~~ 207 (453)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 9998863
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.58 E-value=0.0068 Score=43.53 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
.||--.+|..+...||.++|+.||.|. |..+.|. -|||.+.+.+.|..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 455444999999999999999999984 4445554 59999999999999998765
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.52 E-value=0.014 Score=46.47 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=56.2
Q ss_pred cccEEEEecCCCCc----cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEE
Q 012923 246 TQRKIFVSNVGSEL----EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQ 321 (453)
Q Consensus 246 ~~~~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~ 321 (453)
+-.+|.|+=|..++ +...|...++.||.|.+|.+.- +--|.|.|.+..+|.+|+.++....-|..+.+.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 44588887665554 3445666788999999997742 345999999999999999999988889999998
Q ss_pred Ec
Q 012923 322 RA 323 (453)
Q Consensus 322 ~a 323 (453)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 85
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.51 E-value=0.013 Score=47.38 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCCCcCeEEEcCCC-----CCCCHH----HHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCcc
Q 012923 126 EDPVHRKIFVHGLG-----WDTKAE----TLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKI 196 (453)
Q Consensus 126 ~~~~~~~lfV~nLp-----~~~te~----~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~ 196 (453)
-.|..-||.|.=+. ...-.+ +|.+.|..||+|.-||++-+. -+|+|.+-++|.+|+......+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEE
Confidence 34555677777555 122222 677889999999988887764 8999999999999999999999
Q ss_pred CCeEeEEEecccC
Q 012923 197 GNRMTACQLASIG 209 (453)
Q Consensus 197 ~gr~~~v~~~~~~ 209 (453)
+|+.|.|.+....
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999987644
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.38 E-value=0.022 Score=38.82 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc----CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQY----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~----G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
..|+|++| -+++.++|+.+|..| + ...|..+-|. -|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 47999999 457888999999999 4 4467777775 4899999999999999764
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.33 E-value=0.0017 Score=56.91 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=49.9
Q ss_pred HHHHHHHh-ccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 145 ETLIDAFK-QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 145 ~~l~~~f~-~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
++|...|. +||+|++++|..+. .-.-+|-+||.|...++|++|++.|| ..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34455555 89999999766554 34567899999999999999999998 55899999998875
No 186
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.20 E-value=0.0033 Score=54.98 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=63.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-----CccCCeEeEEEe
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-----KKIGNRMTACQL 205 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-----~~~~gr~~~v~~ 205 (453)
..|||.||+.-+..+.|...|+.||+|....++.|- .++..+-++|.|...-.|.+|+...+ ....++.+.|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999988777776 78888999999999999999998774 235666666654
Q ss_pred c
Q 012923 206 A 206 (453)
Q Consensus 206 ~ 206 (453)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 187
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=96.14 E-value=0.00091 Score=63.20 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=3.6
Q ss_pred cEEEEec
Q 012923 248 RKIFVSN 254 (453)
Q Consensus 248 ~~l~V~n 254 (453)
.|=||.+
T Consensus 192 STDFVCG 198 (458)
T PF10446_consen 192 STDFVCG 198 (458)
T ss_pred cccccCC
Confidence 4556544
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.95 E-value=0.024 Score=40.77 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=41.4
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
...+|. +|..|-..+|.++|+.||.| .|..+-|. -|||.+.+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 356666 99999999999999999988 56666553 59999999999999888776
No 189
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.86 E-value=0.023 Score=50.69 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHhccCCeeEEEEcccCCCCCcc-eEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEeccc
Q 012923 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSK-GYGFILFKTRSGARKALKEPQK-KIGNRMTACQLASI 208 (453)
Q Consensus 144 e~~l~~~f~~~G~i~~v~i~~d~~~g~~~-G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~~ 208 (453)
++++++-+.+||.|..|.|..++..-... --.||+|...++|.+|+-.||+ .|.||.+...+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 45788899999999999887775432222 2379999999999999999995 48899988777653
No 190
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.46 E-value=0.003 Score=59.78 Aligned_cols=6 Identities=0% Similarity=0.030 Sum_probs=2.6
Q ss_pred cCCCCc
Q 012923 254 NVGSEL 259 (453)
Q Consensus 254 nLp~~~ 259 (453)
+||.+|
T Consensus 188 ~LPDST 193 (458)
T PF10446_consen 188 ELPDST 193 (458)
T ss_pred CCCCcc
Confidence 344443
No 191
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.38 E-value=0.015 Score=54.40 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=58.9
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC--CccCCeEEEEEEccC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAID 325 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~l~g~~l~v~~a~~ 325 (453)
..||++||.+.++..+|..+|...-.-.+-.++.. .||+||.+.+...|.+|++.++ ..+.|.++.|.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 37999999999999999999986521112222222 7899999999999999999999 678999999988755
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.80 E-value=0.76 Score=41.58 Aligned_cols=179 Identities=11% Similarity=0.141 Sum_probs=105.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccC-------CCCCcceEEEEEEccHHHHHHHHH-------
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-------VSGKSKGYGFILFKTRSGARKALK------- 190 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~-------~~g~~~G~afV~f~~~~~a~~A~~------- 190 (453)
+++=..|.|.+.||..+++-..+...|-+||+|++|.++.+. ..-+..-...+-|-+.+.|-....
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344456889999999999999999999999999999998765 112334568999999988766542
Q ss_pred cCCCccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHH-HHHHH-
Q 012923 191 EPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK-LLAFF- 268 (453)
Q Consensus 191 ~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~-l~~~F- 268 (453)
++...+.-..|.+.+....-...........+. +... ...-.-.-.....+++|.|- +...+..++ |.+.+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~---~~~~---~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~ 162 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADF---SDYL---VASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLP 162 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccch---hhHH---hhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhh
Confidence 223446677777766543211110000000000 0000 00000011223345677775 334443333 33322
Q ss_pred --hccC----CcceeeeeccCCC--CCCceEEEEEECCHHHHHHHHHcCC
Q 012923 269 --SKYG----EIEEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 269 --~~~G----~i~~v~i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
..-+ .|++|.|+.-... .-++.||.++|-+..-|...+..+.
T Consensus 163 fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 163 FLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2222 3667777653322 3357899999999999998888766
No 193
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.063 Score=50.09 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=49.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEI-EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 200 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i-~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~ 200 (453)
-...|-|.++|.....+||...|+.|+.- -.|+.+-|. .||-.|.+...|..||..-+.++.-|.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeee
Confidence 45689999999999999999999999742 244444454 699999999999999987554443333
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.78 E-value=0.076 Score=51.80 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=65.6
Q ss_pred HHHHHHHHhcchhhhhhhc-ccCCCCCcCeEEEcCCCCCCCHHHHHHHHhc--cCCeeEEEEcccCCCCCcceEEEEEEc
Q 012923 104 NLLREAAENHRDVASRVRQ-VADEDPVHRKIFVHGLGWDTKAETLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFK 180 (453)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lfV~nLp~~~te~~l~~~f~~--~G~i~~v~i~~d~~~g~~~G~afV~f~ 180 (453)
+++.+.......+....+- .-....+.|.|.|+-||.++..++|+.||+- |-.+.+|.+-.+. -=||+|.
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfe 220 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFE 220 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEee
Confidence 4455555444433322221 1122344577899999999999999999974 6678888766553 2699999
Q ss_pred cHHHHHHHHHcCC---CccCCeEeEEEe
Q 012923 181 TRSGARKALKEPQ---KKIGNRMTACQL 205 (453)
Q Consensus 181 ~~~~a~~A~~~~~---~~~~gr~~~v~~ 205 (453)
+..+|+.|.+.|. ++|.|+.|...+
T Consensus 221 sd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 221 SDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 9999999999877 457777765443
No 195
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.81 Score=44.06 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=7.9
Q ss_pred EEEEEEccHHHHH
Q 012923 174 YGFILFKTRSGAR 186 (453)
Q Consensus 174 ~afV~f~~~~~a~ 186 (453)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 5566666666554
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.50 E-value=0.03 Score=53.42 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCCcCeEEEcCCCCCC-CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDT-KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~-te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
..+++.|-+.-+|+.. |-.+|...|.+||.|..|.|-... -.|.|+|.+..+|-.|.....-.|.+|.|+|.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEE
Confidence 3556778888888776 567899999999999999765442 259999999999988888777889999999999
Q ss_pred cccCCCCC
Q 012923 206 ASIGPATT 213 (453)
Q Consensus 206 ~~~~~~~~ 213 (453)
....+...
T Consensus 443 hnps~~tn 450 (526)
T KOG2135|consen 443 HNPSPVTN 450 (526)
T ss_pred ecCCcccC
Confidence 88766443
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.37 E-value=0.055 Score=46.18 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=42.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhc-cCCe---eEEEEccc-CCCC-CcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQ-YGEI---EDCKAVCD-KVSG-KSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~-~G~i---~~v~i~~d-~~~g-~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
...+|.||+||+++|++++.+.+.. ++.. ..+.-... .... ..-.-|||.|.+.+++...+..+++.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 3468999999999999999987776 5554 23321111 1111 12245999999999999999888753
No 198
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.18 E-value=0.016 Score=59.63 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=63.9
Q ss_pred ccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 241 QQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 241 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
......+.+||++||+..+++.+|+..|..||.|..|.|-+-+ -+.-.-|+||.|.+.+.+-.|+..+. ..|..-.+.
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3445567899999999999999999999999999999885532 34445689999999999999998887 445433444
Q ss_pred EEEc
Q 012923 320 CQRA 323 (453)
Q Consensus 320 v~~a 323 (453)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 4444
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.09 E-value=0.1 Score=38.51 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEEEEccHHHHHHHHHcCCCc--cCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEE
Q 012923 175 GFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252 (453)
Q Consensus 175 afV~f~~~~~a~~A~~~~~~~--~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 252 (453)
|+|+|.+..-|+..+++-.+. +.+..+.|........... .-.-......++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~-----------------------k~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQ-----------------------KFQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCce-----------------------EEEEEEcccCCEEEE
Confidence 789999999999999876643 5666666655421111100 000123344579999
Q ss_pred ecCCCCccHHHHHHHHh
Q 012923 253 SNVGSELEPQKLLAFFS 269 (453)
Q Consensus 253 ~nLp~~~t~~~l~~~F~ 269 (453)
.|||....+++|++.++
T Consensus 58 sgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCCCCCCChhhheeeEE
Confidence 99999999999987543
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.96 E-value=0.043 Score=54.74 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=61.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
....++||+|+.+.+..+-++.+...||.|.++..+. |+|+.|..+..+..|+..++ ..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3446999999999999999999999999998876543 89999999999999999999 8899988877653
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.95 E-value=0.06 Score=45.97 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=46.8
Q ss_pred ccEEEEecCCCCccHHHHHHHHhc-cCCc---ceeeeeccCC-CC-CCceEEEEEECCHHHHHHHHHcCC-Ccc-CC---
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSK-YGEI---EEGPLGIDKA-TG-KPKGFCLFVYKTVDAAKKALEEPH-KNF-EG--- 315 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i---~~v~i~~d~~-~g-~~kg~afV~F~~~~~A~~Al~~~~-~~l-~g--- 315 (453)
..+|.||+||+.+|++++++.++. ++.. ..+.-..... .. .....|||.|.+.+++..-+..++ +.| +.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 358999999999999999987776 5554 2333111111 11 124469999999999888888876 333 21
Q ss_pred -eEEEEEEccC
Q 012923 316 -HILNCQRAID 325 (453)
Q Consensus 316 -~~l~v~~a~~ 325 (453)
.+..|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3456666643
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=0.24 Score=44.72 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=56.1
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCC-eEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g-~~l~v~~a~~ 325 (453)
...|.|-++|..... .|..+|++||.|++.... ..-.|-+|.|.+.-+|.+||.+....|+| ..|-|..+.+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 456788888876554 466789999999887553 22458999999999999999998877777 4466777665
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 53
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.67 E-value=0.092 Score=51.24 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=57.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhc--cCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEEEE
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQR 322 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v~~ 322 (453)
+.|+|+-||..+-.++|+.+|.. |-.+.+|.+.... -=||+|.+..||.+|.+.|. .+|.|++|..++
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 57788999999999999999974 6778888775542 25899999999999999987 689999887665
Q ss_pred c
Q 012923 323 A 323 (453)
Q Consensus 323 a 323 (453)
.
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 4
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.41 E-value=0.028 Score=51.60 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=59.4
Q ss_pred cEEEEecCCCCccHHHHH---HHHhccCCcceeeeeccCC--CCC-CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 248 RKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKA--TGK-PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~d~~--~g~-~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
+-+||-+|+..+..+.+. +.|.+||.|..|.+.++.. .+. ...-++|+|...++|..||...+ ..++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888888776555543 5899999999999988762 111 11128999999999999999999 7788888777
Q ss_pred EEccCC
Q 012923 321 QRAIDG 326 (453)
Q Consensus 321 ~~a~~~ 326 (453)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 766543
No 205
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=93.01 E-value=0.22 Score=47.61 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=6.3
Q ss_pred EEccHHHHHHHHH
Q 012923 178 LFKTRSGARKALK 190 (453)
Q Consensus 178 ~f~~~~~a~~A~~ 190 (453)
.|.+..+....|.
T Consensus 329 ~~Ds~K~~lEv~k 341 (654)
T COG5180 329 KFDSSKNLLEVIK 341 (654)
T ss_pred cccchhHHHHHHH
Confidence 3555544444444
No 206
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=92.66 E-value=0.55 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=11.6
Q ss_pred ceEEEEEECCHHHHHHHHHcCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~ 310 (453)
+||.||+=....++..||+.+.
T Consensus 210 kGyIYIEA~KqshV~~Ai~gv~ 231 (1024)
T KOG1999|consen 210 KGYIYIEADKQSHVKEAIEGVR 231 (1024)
T ss_pred ceeEEEEechhHHHHHHHhhhh
Confidence 5555555555555555555443
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.60 E-value=0.079 Score=50.71 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred cEEEEecCCCCc-cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~~ 326 (453)
+.|-+.-.|+.+ |-.+|-..|.+||.|..|.|-.. .--|.|+|.+..+|-.|-......|++|.|+|.|....
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 444455455553 66889999999999999987432 23589999999999888877778899999999999764
Q ss_pred C
Q 012923 327 P 327 (453)
Q Consensus 327 ~ 327 (453)
+
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 208
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.43 E-value=0.065 Score=57.47 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.4
Q ss_pred CHHHHHHHHhccC
Q 012923 143 KAETLIDAFKQYG 155 (453)
Q Consensus 143 te~~l~~~f~~~G 155 (453)
|-++|..++..+-
T Consensus 427 s~eel~~lL~~~~ 439 (840)
T PF04147_consen 427 SHEELLELLDGYS 439 (840)
T ss_pred CHHHHHHHHhcCC
Confidence 5678888887654
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.41 E-value=0.46 Score=42.96 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=52.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEe-EEEecc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT-ACQLAS 207 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~-~v~~~~ 207 (453)
..=|-|-++|+..+- -|..+|++||.|...... .+-.+-+|.|.+.-+|++||......|.+..+ -|..+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 456888888877654 567899999999876422 23348999999999999999998777766543 344443
No 210
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=92.33 E-value=1.6 Score=40.33 Aligned_cols=13 Identities=0% Similarity=-0.291 Sum_probs=5.4
Q ss_pred EEEcCCCCCCCHH
Q 012923 133 IFVHGLGWDTKAE 145 (453)
Q Consensus 133 lfV~nLp~~~te~ 145 (453)
|-+...|.++++-
T Consensus 152 L~~~k~p~Nin~~ 164 (465)
T KOG3973|consen 152 LNFPKQPGNINEW 164 (465)
T ss_pred cCCCCCCCCchHH
Confidence 3333344444443
No 211
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.65 E-value=1.5 Score=34.16 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=44.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
.+-+...|+.++-++|..+.+.+- .|..++|++|.. .++=.++|.|.+.++|.......|++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 344444455555666766666554 477889998753 35557999999999999999998854
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.22 E-value=0.21 Score=46.04 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEcccCC--CCC-cceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEE
Q 012923 131 RKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKV--SGK-SKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~---~~f~~~G~i~~v~i~~d~~--~g~-~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v 203 (453)
.-+||-+|+...-.+.+. ++|.+||.|..|.+..++. .+. ..--++|+|...++|..||...++. +.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888898777655544 6899999999998887762 110 1113899999999999999998865 67777665
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 5543
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.21 E-value=0.13 Score=51.49 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v 203 (453)
...+...+|||+||...+..+-++.+...||.|.+++.+. |+|+.|..+.....|+..+.. .+.+..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445567999999999999999999999999998876543 999999999999999998884 466777666
Q ss_pred EecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC
Q 012923 204 QLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK 283 (453)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~ 283 (453)
..-...-.......... ......-......+-++|.|++..+.+......|.-.+.+.....+.+.
T Consensus 106 ~~d~q~~~n~~k~~~~~--------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~ 171 (668)
T KOG2253|consen 106 NVDEQTIENADKEKSIA--------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEA 171 (668)
T ss_pred cchhhhhcCccccccch--------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHH
Confidence 55211000000000000 0000000011114567888888887777777666654444433332221
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHc
Q 012923 284 ATGKPKGFCLFVYKTVDAAKKALEE 308 (453)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~ 308 (453)
....+-++|-+|.+......++..
T Consensus 172 -d~h~~e~~~~~~~s~~~~~~~~~~ 195 (668)
T KOG2253|consen 172 -DDHCLELEKTETESNSALSKEAES 195 (668)
T ss_pred -HHHHHHHHHhhcccccccCccccc
Confidence 122233445455444444333333
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.76 E-value=0.76 Score=39.41 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=43.6
Q ss_pred cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEEEEccC
Q 012923 260 EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQRAID 325 (453)
Q Consensus 260 t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v~~a~~ 325 (453)
....|+.+|..|+.+..+.+++. =+-..|.|.+.++|.+|...++ ..|.|..|+|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999998887764 2347899999999999999988 468999999998843
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.10 E-value=0.19 Score=51.67 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=60.7
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C--ccCCeEEEEEEccC
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILNCQRAID 325 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~l~g~~l~v~~a~~ 325 (453)
+..+-|.+-..+-..|..+|+.||.|.+++.+++ -..|.|+|.+.+.|..|+.++. + ..-|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444555667788889999999999999999887 4469999999999999999998 3 45788899999876
Q ss_pred CCC
Q 012923 326 GPK 328 (453)
Q Consensus 326 ~~~ 328 (453)
-+.
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 654
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.96 E-value=0.94 Score=43.43 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=55.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
++.|+|-.+|..+|-.||..|+..|- .|..++|++|... ++=.++|.|.+.++|....+.+|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCC
Confidence 78999999999999999999998765 5889999997532 3446899999999999999999854
No 217
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.53 E-value=3.1 Score=32.37 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE 314 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~ 314 (453)
..+.+...|+.++-+.|..+.+.+- .|..++|++|. ..++-.+.++|.+.++|..=....| ..|+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4555566667777778877777664 46678888863 2346668999999999999999988 5443
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.82 E-value=2.3 Score=42.29 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=53.3
Q ss_pred CcCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEcccC----------CCCC-----------------------
Q 012923 129 VHRKIFVHGLGWD-TKAETLIDAFKQY----GEIEDCKAVCDK----------VSGK----------------------- 170 (453)
Q Consensus 129 ~~~~lfV~nLp~~-~te~~l~~~f~~~----G~i~~v~i~~d~----------~~g~----------------------- 170 (453)
.+++|-|.||.|+ +...||.-+|..| |.|.+|.|+... .+|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4579999999975 5678999888765 478888874210 0111
Q ss_pred --------------cceEEEEEEccHHHHHHHHHcCCCc-cC--CeEeEEEe
Q 012923 171 --------------SKGYGFILFKTRSGARKALKEPQKK-IG--NRMTACQL 205 (453)
Q Consensus 171 --------------~~G~afV~f~~~~~a~~A~~~~~~~-~~--gr~~~v~~ 205 (453)
..=||.|+|.+++.|.+..+.+.+. +. +..|.+.+
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1127999999999999999988754 43 33444443
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.32 E-value=0.42 Score=49.29 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=67.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc---cCCeEeEEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK---IGNRMTACQ 204 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~---~~gr~~~v~ 204 (453)
+..-+.++-|.+-..+-.-|..+|.+||.|.++|.+++-. .|.|.|.+.+.|..|+.+++++ +.|-+.+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 3445677778888889999999999999999999888763 6999999999999999999854 678888888
Q ss_pred ecccCCCCCCC
Q 012923 205 LASIGPATTPA 215 (453)
Q Consensus 205 ~~~~~~~~~~~ 215 (453)
++..-+....+
T Consensus 370 ~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 370 FAKTLPMYEPP 380 (1007)
T ss_pred eccccccccCC
Confidence 88755554433
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.87 E-value=2.9 Score=35.91 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=43.0
Q ss_pred CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC--Cc-cCCeEeEEEecc
Q 012923 143 KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ--KK-IGNRMTACQLAS 207 (453)
Q Consensus 143 te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~--~~-~~gr~~~v~~~~ 207 (453)
....|+++|..|+.+..+.+++.- +-..|.|.+.+.|.+|...++ .. +.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 357899999999998888766543 248999999999999999988 44 899999998884
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.54 E-value=2.7 Score=30.07 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCccHHHHHHHHhccCCc-----ceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 257 SELEPQKLLAFFSKYGEI-----EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 257 ~~~t~~~l~~~F~~~G~i-----~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..++..+|..++...+.| -.|+|. ..|+||+-.. +.|..++..++ ..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457788888888766544 456664 3389998764 47888999988 8899999999875
No 222
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=85.50 E-value=6.3 Score=38.13 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=8.5
Q ss_pred CCCCCCCcccccccCchhhhh
Q 012923 367 PSGPAIPPAAAQALNPALGQA 387 (453)
Q Consensus 367 p~~~~~~p~~~~~~~p~~~~~ 387 (453)
|.++.++......|+|.+.|+
T Consensus 537 P~M~~~~~G~~~~Y~P~~PQ~ 557 (654)
T COG5180 537 PMMNGFAAGSMGMYMPFQPQP 557 (654)
T ss_pred CCcCCcccCCcccccCCCCCc
Confidence 333333333334444444443
No 223
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=85.42 E-value=0.4 Score=48.68 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=13.0
Q ss_pred EEEEEECCHHHHHHHHHcCC-CccCC
Q 012923 291 FCLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
-.||...+.++-..|++.+- ..|.|
T Consensus 623 ~IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 623 AIFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred hheeeeecchHHHHHHHHHHhccCCC
Confidence 34555555666555555543 33444
No 224
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=85.21 E-value=17 Score=32.92 Aligned_cols=8 Identities=50% Similarity=0.904 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 012923 444 GQYGAPYM 451 (453)
Q Consensus 444 g~~g~p~~ 451 (453)
+..+.|+|
T Consensus 241 ~~pgtpim 248 (354)
T KOG4594|consen 241 GPPGTPIM 248 (354)
T ss_pred CCCCCCcC
Confidence 44445555
No 225
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.90 E-value=5.1 Score=27.88 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=39.1
Q ss_pred CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 258 ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 258 ~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
.++-++|+..+..|. ..+|..|+ .|| ||.|.+..+|.++....+ ..+....|.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 467889999999985 33344443 453 789999999999999988 555555543
No 226
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.97 E-value=4.4 Score=39.11 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=54.4
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
.+.|+|-.+|..+|-.+|..|+..|- .|..|+|+||.. ..+=.+.|+|.+..+|..-...+| ..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 56899999999999999999988764 488999999632 224448899999999999999988 55543
No 227
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.58 E-value=6.7 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 140 WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 140 ~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
..++-.+|+..+..|.- .+|+.|+ + | =||.|.+..+|++|....++.
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCC
Confidence 45677899999999953 3445555 3 3 489999999999999988854
No 228
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=80.16 E-value=5.2 Score=43.65 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=13.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQ 153 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~ 153 (453)
-++|-+. ||.....-+|..+..+
T Consensus 1442 wcev~~~-lp~~~~k~~mssiVe~ 1464 (1640)
T KOG0262|consen 1442 WCEVELK-LPLDKEKLDMSSIVES 1464 (1640)
T ss_pred EEEEEEE-ecCCCcchHHHHHHHH
Confidence 3445544 7777666666665543
No 229
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.12 E-value=6.8 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhccC-----CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 140 WDTKAETLIDAFKQYG-----EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 140 ~~~te~~l~~~f~~~G-----~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..++..+|..++...+ .|-.|+|..+ |+||+-... .|..++..++ ..+.|+.+.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5677889999888765 3556766554 799987765 6778888777 5699999999764
No 230
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=79.20 E-value=8.2 Score=40.23 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=6.0
Q ss_pred cCchhhhhhccCCCC
Q 012923 380 LNPALGQALLGTLGS 394 (453)
Q Consensus 380 ~~p~~~~~~~~~~~~ 394 (453)
++|.++..+.++++.
T Consensus 578 ~~P~~g~~p~~~~~~ 592 (756)
T KOG2375|consen 578 YNPQMGNPPTGTSVA 592 (756)
T ss_pred CCcccCCCCCcceec
Confidence 344444444343333
No 231
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.17 E-value=2.1 Score=35.44 Aligned_cols=117 Identities=14% Similarity=0.008 Sum_probs=73.1
Q ss_pred EEEcCC-C-CCCCHHHHHHHHhc-cCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecccC
Q 012923 133 IFVHGL-G-WDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (453)
Q Consensus 133 lfV~nL-p-~~~te~~l~~~f~~-~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~ 209 (453)
..|+.+ . ...+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++..-.-.+.+..+.+......
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 444444 2 34566666666654 232223332221 235899999999999999987666677777776655422
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCC-ccHHHHHHHHhccCCcceeeee
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLG 280 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~ 280 (453)
...... ......--|.|.|||.. ++++-|+.+.+.+|.+..+...
T Consensus 93 ~~~~~~--------------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 93 FNPSEV--------------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccc--------------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 211100 00011235778899987 7889999999999999988764
No 232
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=76.95 E-value=4.4 Score=34.06 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=52.3
Q ss_pred cEEEEecCCCCccH-----HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe-EEEE
Q 012923 248 RKIFVSNVGSELEP-----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILNC 320 (453)
Q Consensus 248 ~~l~V~nLp~~~t~-----~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~-~l~v 320 (453)
+++++.+++..+-. .....+|.+|-...-.++++. .++.-|.|.+...|..|...++ ..|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 46777888765422 233456777777666666653 5567788999999999999999 889888 7777
Q ss_pred EEccC
Q 012923 321 QRAID 325 (453)
Q Consensus 321 ~~a~~ 325 (453)
-++..
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 77744
No 233
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=75.67 E-value=1 Score=44.18 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.3
Q ss_pred CHHHHH
Q 012923 143 KAETLI 148 (453)
Q Consensus 143 te~~l~ 148 (453)
+.+.|+
T Consensus 550 ~r~~ik 555 (615)
T KOG0526|consen 550 SRESIK 555 (615)
T ss_pred hhhhHh
Confidence 333333
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.27 E-value=4.4 Score=36.26 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=28.1
Q ss_pred cccEEEEecCCCCc------------cHHHHHHHHhccCCcceeeee
Q 012923 246 TQRKIFVSNVGSEL------------EPQKLLAFFSKYGEIEEGPLG 280 (453)
Q Consensus 246 ~~~~l~V~nLp~~~------------t~~~l~~~F~~~G~i~~v~i~ 280 (453)
...+|++.+||-.| +++.|+..|+.||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34588888887543 678899999999999988875
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=74.98 E-value=2.3 Score=38.02 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=28.1
Q ss_pred cCeEEEcCCCCCC------------CHHHHHHHHhccCCeeEEEEc
Q 012923 130 HRKIFVHGLGWDT------------KAETLIDAFKQYGEIEDCKAV 163 (453)
Q Consensus 130 ~~~lfV~nLp~~~------------te~~l~~~f~~~G~i~~v~i~ 163 (453)
..|||+-+||-.| +++-|+..|..||.|..|.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3589999999543 577899999999999998873
No 236
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=74.08 E-value=2.1 Score=40.62 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.9
Q ss_pred CHHHHH
Q 012923 143 KAETLI 148 (453)
Q Consensus 143 te~~l~ 148 (453)
|.+||.
T Consensus 191 T~eDF~ 196 (324)
T PF05285_consen 191 TPEDFA 196 (324)
T ss_pred CHHHHH
Confidence 455544
No 237
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.07 E-value=21 Score=35.89 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=58.2
Q ss_pred ccccEEEEecCCCC-ccHHHHHHHHhcc----CCcceeeeeccC----------CCCC----------------------
Q 012923 245 YTQRKIFVSNVGSE-LEPQKLLAFFSKY----GEIEEGPLGIDK----------ATGK---------------------- 287 (453)
Q Consensus 245 ~~~~~l~V~nLp~~-~t~~~l~~~F~~~----G~i~~v~i~~d~----------~~g~---------------------- 287 (453)
..+++|-|.||.|. +.-.+|.-+|+.| |.|.+|.|.... ..|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34579999999987 7889999999876 578888876422 1111
Q ss_pred ---------------CceEEEEEECCHHHHHHHHHcCC-CccC--CeEEEEEEc
Q 012923 288 ---------------PKGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNCQRA 323 (453)
Q Consensus 288 ---------------~kg~afV~F~~~~~A~~Al~~~~-~~l~--g~~l~v~~a 323 (453)
..-||.|+|.+...|.+....+. ..|. +..|.++|.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 12268999999999999999998 6664 455666665
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.66 E-value=4.7 Score=31.74 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=30.8
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHH-HHHHHH
Q 012923 132 KIFVHGLGWDT---------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSG-ARKALK 190 (453)
Q Consensus 132 ~lfV~nLp~~~---------te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~-a~~A~~ 190 (453)
++.|-|++... +-..|++.|..|..+. ++.+.++. -++|+++|.|...-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 46677776443 4568999999998874 66666652 578999999985433 333443
No 239
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.77 E-value=3.6 Score=38.90 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=12.2
Q ss_pred EEcCCCCCCCHHHHHHHHhcc
Q 012923 134 FVHGLGWDTKAETLIDAFKQY 154 (453)
Q Consensus 134 fV~nLp~~~te~~l~~~f~~~ 154 (453)
|---||..-|..||...|-.+
T Consensus 354 fAq~lp~i~~p~d~y~~F~~~ 374 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVDV 374 (514)
T ss_pred ccccCCccCCcchhhhhheec
Confidence 455566655666766655443
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.70 E-value=13 Score=26.05 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=43.2
Q ss_pred HHHHHHHhccCC-cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 262 ~~l~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
++|.+-|...|. |..|.-++.+.+...-..-||++....+ ..+.++ ..|++..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCC
Confidence 467777777774 6677777766667777778888876554 444566 78999999998764
No 241
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=69.60 E-value=2.1 Score=47.99 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.9
Q ss_pred eeEEEEc
Q 012923 157 IEDCKAV 163 (453)
Q Consensus 157 i~~v~i~ 163 (453)
|..|+|+
T Consensus 286 ~~~v~ii 292 (2849)
T PTZ00415 286 LIKVKII 292 (2849)
T ss_pred cceeEEE
Confidence 3344443
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=69.47 E-value=5.9 Score=33.21 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=43.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCC--CcceEEEEEEccHHHHHHHHHcCCC
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQK 194 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g--~~~G~afV~f~~~~~a~~A~~~~~~ 194 (453)
.|++|.. +.+...++|..+-+ |.+..|..-+.. .+ ..+|-.||+|.+.+.|.++++....
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~ 172 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEE 172 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhh
Confidence 5678888 55555666666666 778777644332 33 5789999999999999999886553
No 243
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.37 E-value=16 Score=32.98 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=34.6
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCc-ceeeeeccCCCCCCceEEEEEECCH
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTV 299 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~ 299 (453)
.+-|+|+||+.++--.+|+..+...+-+ .++.+ .| +.|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-----ec-CCcceeEecCCc
Confidence 4679999999999999999988876543 23322 22 367799999653
No 244
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=64.90 E-value=3.7 Score=36.11 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=8.1
Q ss_pred CCCCHHHHHHHHhc
Q 012923 140 WDTKAETLIDAFKQ 153 (453)
Q Consensus 140 ~~~te~~l~~~f~~ 153 (453)
-+++..+++..|+-
T Consensus 148 ~S~DW~Em~~Ais~ 161 (217)
T PF07423_consen 148 GSVDWNEMLKAISY 161 (217)
T ss_pred CCcCHHHHHHHHHH
Confidence 34566666666653
No 245
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=64.49 E-value=42 Score=25.98 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCCCccHHHHHHHHh---ccCCcceeeeeccCCCCCCceEEEEEECCHH
Q 012923 255 VGSELEPQKLLAFFS---KYGEIEEGPLGIDKATGKPKGFCLFVYKTVD 300 (453)
Q Consensus 255 Lp~~~t~~~l~~~F~---~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~ 300 (453)
-|+.+|..+|+++|. .|-.|.+-.+.+|----.+-..||.-|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 478899999999998 4666776666665322233557888887553
No 246
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=64.03 E-value=81 Score=33.33 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=16.2
Q ss_pred cceEEEEEEccHHHHHHHHHcC
Q 012923 171 SKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 171 ~~G~afV~f~~~~~a~~A~~~~ 192 (453)
..|.|.+-|-+..-...|+...
T Consensus 630 WQGIalLPFiDe~rLl~a~~~~ 651 (931)
T KOG2044|consen 630 WQGIALLPFIDERRLLSAVAKV 651 (931)
T ss_pred ccccccccccchhhHHHHHHhh
Confidence 4688888888887777777654
No 247
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=63.68 E-value=3.7 Score=40.71 Aligned_cols=6 Identities=17% Similarity=0.219 Sum_probs=2.5
Q ss_pred CCCCcc
Q 012923 255 VGSELE 260 (453)
Q Consensus 255 Lp~~~t 260 (453)
|.++|-
T Consensus 405 LHPSWe 410 (432)
T PF09073_consen 405 LHPSWE 410 (432)
T ss_pred CCccHH
Confidence 444443
No 248
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=62.83 E-value=16 Score=25.52 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=42.2
Q ss_pred HHHHHHHhccCC-cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 262 QKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 262 ~~l~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.+|.+.|..+|- +..|+-++.+.+..+-..-||+.....+-.. .++ ..|+++.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 357778888874 6677777776666667777888765543333 556 78999999997763
No 249
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.50 E-value=21 Score=33.98 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=49.8
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCc-ceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHI 317 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~ 317 (453)
...+.|-|.++|...-.++|..+|..|+.- -+|.++-| -.||-.|.+...|..||..-+.++.=|+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccCceEEeee
Confidence 345789999999998888899999988652 34555544 3689999999999999988654443333
No 250
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.92 E-value=20 Score=24.39 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHHHHHHhccCCeeEEEE
Q 012923 145 ETLIDAFKQYGEIEDCKA 162 (453)
Q Consensus 145 ~~l~~~f~~~G~i~~v~i 162 (453)
.+||++|+.+|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999977654
No 251
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.85 E-value=29 Score=24.27 Aligned_cols=60 Identities=10% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 145 ETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 145 ~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
++|++-|...| .|..|+-+..+.++...-.-||++....+... .++ ..|++..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46778888877 67888877777667777788888877765332 344 55888888888764
No 252
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.11 E-value=12 Score=33.72 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccH
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTR 182 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~ 182 (453)
...+-|||+|||.++.-.||+..+.+.+-+ -++|... -+.|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 334569999999999999999999877643 2233222 2466799999765
No 253
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=59.76 E-value=60 Score=29.18 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.1
Q ss_pred HHHHHhcc
Q 012923 147 LIDAFKQY 154 (453)
Q Consensus 147 l~~~f~~~ 154 (453)
|+.+-..|
T Consensus 70 ik~lr~d~ 77 (390)
T KOG2192|consen 70 IKALRTDY 77 (390)
T ss_pred HHHHhhhc
Confidence 33333333
No 254
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=59.09 E-value=3.6 Score=43.92 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.7
Q ss_pred eEEEcCCC
Q 012923 132 KIFVHGLG 139 (453)
Q Consensus 132 ~lfV~nLp 139 (453)
-+||-.+|
T Consensus 906 ~~wvl~~P 913 (1096)
T TIGR00927 906 AIYLFLLP 913 (1096)
T ss_pred eEeEEecc
Confidence 34554444
No 255
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=58.73 E-value=4.6 Score=38.37 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCcCeEEEcCCCCCCCHH--------HHHHHHhc--cCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 127 DPVHRKIFVHGLGWDTKAE--------TLIDAFKQ--YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~--------~l~~~f~~--~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
....|.+|+.++....+.+ +|..+|.. .+.+..++..++.....++|..|++|...+.+++++...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~ 246 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGF 246 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhccc
Confidence 3345789999998777666 99999999 678888888888878889999999999999999998543
No 256
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=58.26 E-value=46 Score=34.90 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=46.4
Q ss_pred EEEEe-cCCCCccHHHHHHHHhccCCcc-----eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 249 KIFVS-NVGSELEPQKLLAFFSKYGEIE-----EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 249 ~l~V~-nLp~~~t~~~l~~~F~~~G~i~-----~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
++||. +--..++.-+|-.++..-+.|. .|+|. ..|.||+.. ...|...+..|+ ..+.|+.|.|.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 45553 1234577777777776555443 55554 347899875 556888888887 88999999999
Q ss_pred Ecc
Q 012923 322 RAI 324 (453)
Q Consensus 322 ~a~ 324 (453)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 874
No 257
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.71 E-value=18 Score=33.06 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=61.2
Q ss_pred cccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC-------CCCCCceEEEEEECCHHHHHH----HHHcCC
Q 012923 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK-------ATGKPKGFCLFVYKTVDAAKK----ALEEPH 310 (453)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~-------~~g~~kg~afV~F~~~~~A~~----Al~~~~ 310 (453)
.....++.|.+.|+...++-..+...|-+||.|++|.++.+. ..-+......+.|-+.+.+.. .|..+.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344556789999999999999999999999999999999875 111224567888988887653 233333
Q ss_pred ---CccCCeEEEEEEcc
Q 012923 311 ---KNFEGHILNCQRAI 324 (453)
Q Consensus 311 ---~~l~g~~l~v~~a~ 324 (453)
..|....|.|.+..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 46777788887765
No 258
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.12 E-value=14 Score=29.01 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=31.4
Q ss_pred cEEEEecCCCCc---------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCH-HHHHHHHHc
Q 012923 248 RKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV-DAAKKALEE 308 (453)
Q Consensus 248 ~~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~-~~A~~Al~~ 308 (453)
.++.|-|++... +-+.|++.|+.|..+. ++.+.+. ..++|++.|+|.+. .--..|++.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 478888886543 5578999999998764 5555553 25589999999753 333444443
No 259
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.03 E-value=24 Score=34.31 Aligned_cols=12 Identities=0% Similarity=0.086 Sum_probs=4.7
Q ss_pred HHHHhccCCcce
Q 012923 265 LAFFSKYGEIEE 276 (453)
Q Consensus 265 ~~~F~~~G~i~~ 276 (453)
..+|..-..|..
T Consensus 280 etlyGHqd~v~~ 291 (479)
T KOG0299|consen 280 ETLYGHQDGVLG 291 (479)
T ss_pred HHHhCCccceee
Confidence 344443333433
No 260
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=54.79 E-value=33 Score=23.98 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 145 ETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 145 ~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
.+|++-|...| .+..|+-+..+.++.....-||+.....+... -++ +.|+++.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 36788888888 68888888877666666777888776543333 334 55889998888764
No 261
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=52.91 E-value=6.9 Score=38.46 Aligned_cols=8 Identities=0% Similarity=-0.471 Sum_probs=4.6
Q ss_pred EEEEEECC
Q 012923 291 FCLFVYKT 298 (453)
Q Consensus 291 ~afV~F~~ 298 (453)
-|.+.+.+
T Consensus 443 ~ap~~~s~ 450 (694)
T KOG4264|consen 443 RAPSHQSD 450 (694)
T ss_pred cccccccc
Confidence 46666654
No 262
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=52.71 E-value=7.6 Score=36.47 Aligned_cols=8 Identities=13% Similarity=0.443 Sum_probs=3.3
Q ss_pred ccHHHHHH
Q 012923 259 LEPQKLLA 266 (453)
Q Consensus 259 ~t~~~l~~ 266 (453)
++.++|-.
T Consensus 450 MsSqeVVd 457 (542)
T KOG0699|consen 450 MSSQEVVD 457 (542)
T ss_pred ccHHHHHH
Confidence 34444433
No 263
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.42 E-value=3.4 Score=40.82 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=45.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
.|+|||+||+++++-.+|..+++.+--+..+-+..+....+...+.+|+|.---...-|+.+++
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 3789999999999999999999987666565544433344556788999985544444444444
No 264
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.24 E-value=68 Score=31.48 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=4.7
Q ss_pred EEEECCHH
Q 012923 293 LFVYKTVD 300 (453)
Q Consensus 293 fV~F~~~~ 300 (453)
.++|.+.+
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 47786543
No 265
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=51.59 E-value=9.9 Score=35.73 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.5
Q ss_pred eEEEcC
Q 012923 132 KIFVHG 137 (453)
Q Consensus 132 ~lfV~n 137 (453)
.|||-|
T Consensus 343 ~liVAN 348 (542)
T KOG0699|consen 343 KLIVAN 348 (542)
T ss_pred eEEEec
Confidence 344443
No 266
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=51.16 E-value=14 Score=32.49 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC 160 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v 160 (453)
......++||+-|||..+|++-|.++.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 445567899999999999999999999999966544
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.32 E-value=3 Score=39.91 Aligned_cols=75 Identities=5% Similarity=-0.138 Sum_probs=57.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
.+.|+..||...++.++.-+|..||.|.-+.+.+.-..+..+-.+||+-.+ ..+..||..+. ..+.+..+++.++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 467889999999999999999999999998887776667777788887654 34566666555 4466666666555
No 268
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=48.97 E-value=2.4e+02 Score=30.12 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=9.5
Q ss_pred cEEEEecCCCCccHHHHHHHHhc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSK 270 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~ 270 (453)
..|||.+-.... +-|+++.++
T Consensus 668 d~Lfi~~~hp~~--e~i~~lysk 688 (931)
T KOG2044|consen 668 DLLFISDKHPLF--EFILQLYSK 688 (931)
T ss_pred ceEEecCCCchH--HHHHHHHHh
Confidence 356665443332 444444443
No 269
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=46.87 E-value=25 Score=38.77 Aligned_cols=9 Identities=44% Similarity=0.656 Sum_probs=5.2
Q ss_pred HHHHHHHHH
Q 012923 299 VDAAKKALE 307 (453)
Q Consensus 299 ~~~A~~Al~ 307 (453)
.++|..||.
T Consensus 1531 VEAar~~Iv 1539 (1640)
T KOG0262|consen 1531 VEAARNAIV 1539 (1640)
T ss_pred HHHHHHHHH
Confidence 466656554
No 270
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.82 E-value=62 Score=23.78 Aligned_cols=58 Identities=5% Similarity=0.130 Sum_probs=42.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-cC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQ-YG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~-~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
.-|+--+...++..+|+..++. || .|..|+.+.-+ . ..--|||.|..-..|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHhh
Confidence 3555557899999999999988 44 57777766654 2 2235999999988888776544
No 271
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=46.49 E-value=9.7 Score=36.28 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=50.0
Q ss_pred ccEEEEecCCCCccH--------HHHHHHHhc--cCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHc
Q 012923 247 QRKIFVSNVGSELEP--------QKLLAFFSK--YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEE 308 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~--------~~l~~~F~~--~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~ 308 (453)
.+.+|+.++....+. +++..+|.. ++.+..|+.-++.....++|-.|++|...+.|.+.+..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 356777777766544 489999999 67888888888776677889899999999999999953
No 272
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=10 Score=35.56 Aligned_cols=9 Identities=0% Similarity=-0.071 Sum_probs=4.4
Q ss_pred CeEEEcCCC
Q 012923 131 RKIFVHGLG 139 (453)
Q Consensus 131 ~~lfV~nLp 139 (453)
.+|+.--+|
T Consensus 399 HtVh~pyFP 407 (520)
T KOG4434|consen 399 HTVHSPYFP 407 (520)
T ss_pred eeeccCCCc
Confidence 455554444
No 273
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.09 E-value=2.8 Score=40.10 Aligned_cols=77 Identities=4% Similarity=-0.234 Sum_probs=62.0
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.+.|+..||..++++++.-+|+.||.|.-+.+-+.-..+..+-++||+-.+ .++..+|..+. ..+.+..++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 467888999999999999999999999988877666666777788888654 56777777777 778888888877754
No 274
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.90 E-value=66 Score=23.19 Aligned_cols=58 Identities=5% Similarity=0.103 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-C-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQY-G-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~-G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
.-|+-.++.+++..+|+..++.+ + .|..|+.+.-+ . ..--|||++..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 46666689999999999999874 4 56677665554 2 2224999998888877765443
No 275
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=43.87 E-value=10 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=9.3
Q ss_pred CeEEEcCCCCCCCHHHHH
Q 012923 131 RKIFVHGLGWDTKAETLI 148 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~ 148 (453)
.+||-+-....+..++|.
T Consensus 317 Ykvftr~fDe~v~aeelc 334 (620)
T COG4547 317 YKVFTREFDEIVLAEELC 334 (620)
T ss_pred ccccchhhhhhhhHHHhh
Confidence 456665555555444444
No 276
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=43.84 E-value=18 Score=35.72 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=9.9
Q ss_pred CCCcCeEEEcCCCCCC
Q 012923 127 DPVHRKIFVHGLGWDT 142 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~ 142 (453)
++...+++-+.|.+++
T Consensus 176 Dp~GaR~~sGs~Dy~v 191 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTV 191 (641)
T ss_pred cCCCceeeeccccceE
Confidence 3445567777776655
No 277
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=43.73 E-value=9.7 Score=38.28 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=10.2
Q ss_pred CeEEEcCCCCCCCHH
Q 012923 131 RKIFVHGLGWDTKAE 145 (453)
Q Consensus 131 ~~lfV~nLp~~~te~ 145 (453)
.+--|+|||..+.++
T Consensus 119 ~rntvgnipl~wYdd 133 (733)
T KOG0650|consen 119 TRNTVGNIPLKWYDD 133 (733)
T ss_pred hhcccCCcccccccc
Confidence 456788888766544
No 278
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.33 E-value=9 Score=34.60 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=6.4
Q ss_pred CCCCccHHHHHH
Q 012923 255 VGSELEPQKLLA 266 (453)
Q Consensus 255 Lp~~~t~~~l~~ 266 (453)
....+|.++|..
T Consensus 181 ~~~~lTQeElL~ 192 (240)
T PF05764_consen 181 EERPLTQEELLE 192 (240)
T ss_pred cCCCCCHHHHHH
Confidence 344566666544
No 279
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=15 Score=37.32 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=7.5
Q ss_pred EEEEEEc-cHHHHHHHHH
Q 012923 174 YGFILFK-TRSGARKALK 190 (453)
Q Consensus 174 ~afV~f~-~~~~a~~A~~ 190 (453)
|+.|... -+.....|+.
T Consensus 526 ~V~v~l~nvP~~i~E~~~ 543 (754)
T KOG1980|consen 526 YVRVFLRNVPVSILEAIK 543 (754)
T ss_pred eEEEEeecCcHHHHHHHh
Confidence 3444444 2344444554
No 280
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.41 E-value=3.7 Score=40.64 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=45.7
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
..++|||+|++++++-.+|..+|..+-.+..+.+-.+....+...+.+|+|+..-....|+-+||
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 35789999999999999999999988766666554333333345568899976554444444444
No 281
>COG4907 Predicted membrane protein [Function unknown]
Probab=40.71 E-value=61 Score=31.78 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCC
Q 012923 299 VDAAKKALEEPH 310 (453)
Q Consensus 299 ~~~A~~Al~~~~ 310 (453)
.+.+.+|++.++
T Consensus 525 ~dkVvkam~~~~ 536 (595)
T COG4907 525 SDKVVKAMRKAL 536 (595)
T ss_pred HHHHHHHHHHhC
Confidence 466777777766
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.25 E-value=28 Score=30.73 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCccee
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG 277 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v 277 (453)
...+||+-|+|..+|++.|.++.+++|.+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34699999999999999999999999865543
No 283
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=40.09 E-value=12 Score=35.22 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=2.9
Q ss_pred EEEEEEc
Q 012923 174 YGFILFK 180 (453)
Q Consensus 174 ~afV~f~ 180 (453)
|-|-.|-
T Consensus 455 Ytytv~l 461 (520)
T KOG4434|consen 455 YTYTVFL 461 (520)
T ss_pred eEEEEEE
Confidence 4444443
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.61 E-value=1.6e+02 Score=30.83 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=3.4
Q ss_pred eEEEcCC
Q 012923 132 KIFVHGL 138 (453)
Q Consensus 132 ~lfV~nL 138 (453)
-|+|-.+
T Consensus 122 VIIIDEa 128 (624)
T PRK14959 122 VFIIDEA 128 (624)
T ss_pred EEEEECh
Confidence 4455544
No 285
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.11 E-value=11 Score=38.32 Aligned_cols=8 Identities=13% Similarity=0.659 Sum_probs=3.6
Q ss_pred eEEEcCCC
Q 012923 132 KIFVHGLG 139 (453)
Q Consensus 132 ~lfV~nLp 139 (453)
+|||+|+|
T Consensus 528 ~v~l~nvP 535 (754)
T KOG1980|consen 528 RVFLRNVP 535 (754)
T ss_pred EEEeecCc
Confidence 44444444
No 286
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=38.50 E-value=11 Score=34.94 Aligned_cols=7 Identities=14% Similarity=0.225 Sum_probs=3.4
Q ss_pred CeEEEcC
Q 012923 131 RKIFVHG 137 (453)
Q Consensus 131 ~~lfV~n 137 (453)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 3455554
No 287
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=35.60 E-value=38 Score=33.60 Aligned_cols=6 Identities=33% Similarity=0.827 Sum_probs=2.3
Q ss_pred HHhccC
Q 012923 150 AFKQYG 155 (453)
Q Consensus 150 ~f~~~G 155 (453)
|+..||
T Consensus 229 Lv~~YG 234 (694)
T KOG4264|consen 229 LVTKYG 234 (694)
T ss_pred HHHHhC
Confidence 333343
No 288
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=34.36 E-value=64 Score=23.93 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=24.8
Q ss_pred EEEEECCHHHHHHHHHcCC--CccCCeEEEEEEc
Q 012923 292 CLFVYKTVDAAKKALEEPH--KNFEGHILNCQRA 323 (453)
Q Consensus 292 afV~F~~~~~A~~Al~~~~--~~l~g~~l~v~~a 323 (453)
|+|+|.+..-|.+.++.-. ..+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 6899999999999998876 4567766666543
No 289
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.35 E-value=65 Score=30.49 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=37.7
Q ss_pred EEEEEccHHHHHHHHHcCCCccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEec
Q 012923 175 GFILFKTRSGARKALKEPQKKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSN 254 (453)
Q Consensus 175 afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 254 (453)
|||+|.+..+|..|++.+...-. +.+.+..+. ..+-|+=.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~AP--------------------------------------eP~DI~W~N 41 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPAP--------------------------------------EPDDIIWEN 41 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeCC--------------------------------------Ccccccccc
Confidence 79999999999999996543222 333444442 112466688
Q ss_pred CCCCccHHHHHHHHhc
Q 012923 255 VGSELEPQKLLAFFSK 270 (453)
Q Consensus 255 Lp~~~t~~~l~~~F~~ 270 (453)
|.....+..+|.++..
T Consensus 42 L~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 42 LSISSKQRFLRRIIVN 57 (325)
T ss_pred cCCChHHHHHHHHHHH
Confidence 8777777777776553
No 290
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=34.09 E-value=1.4e+02 Score=19.80 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=42.0
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCH----HHHHHHHHcC
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTV----DAAKKALEEP 309 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~----~~A~~Al~~~ 309 (453)
+|.|.||.-.-....|.+.+...-.|.++.+-.. .+.+-|.|... +...++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 5788888888888999999999888888888654 45688888743 5666666654
No 291
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.75 E-value=50 Score=31.54 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=44.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEcccCCC--CCcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDKVS--GKSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~-i~~v~i~~d~~~--g~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
.+.|.|++||+..|+.+|.+-..+|-. |........... ..-.+.|||.|...++.......+++.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 367999999999999999988877542 222222211100 112567999999999988777776643
No 292
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=32.71 E-value=15 Score=37.53 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=14.0
Q ss_pred CCccHHHHHHHHhccCCcceeeeec
Q 012923 257 SELEPQKLLAFFSKYGEIEEGPLGI 281 (453)
Q Consensus 257 ~~~t~~~l~~~F~~~G~i~~v~i~~ 281 (453)
..+|++.|+.++.. ..|+.-.|+.
T Consensus 462 ~~vTEe~VrryL~r-kPmTTkdLL~ 485 (527)
T PF05793_consen 462 SGVTEEEVRRYLRR-KPMTTKDLLK 485 (527)
T ss_dssp SS--HHHHHHHHHH-S-B-HHHHHH
T ss_pred cCcCHHHHHHHHhc-CCccHHHHHH
Confidence 45799999999884 5666555544
No 293
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=32.45 E-value=1.4e+02 Score=30.47 Aligned_cols=47 Identities=9% Similarity=0.219 Sum_probs=36.0
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEEC
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (453)
.......||+.+|+.++.++-=.++....-..+++.|++ .||| |+|+
T Consensus 297 EGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r-------pgYA-IEYD 343 (621)
T COG0445 297 EGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR-------PGYA-IEYD 343 (621)
T ss_pred CCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec-------ccee-eeec
Confidence 344467999999999988887777777777788888876 4666 6664
No 294
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.57 E-value=30 Score=35.81 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=6.1
Q ss_pred ccHHHHHHHHHcCC
Q 012923 180 KTRSGARKALKEPQ 193 (453)
Q Consensus 180 ~~~~~a~~A~~~~~ 193 (453)
-..+...+|+..+.
T Consensus 277 M~~~~W~~~~~~i~ 290 (595)
T PF05470_consen 277 MPIEQWKKCLNNIN 290 (595)
T ss_pred cCHHHHHHHHHHHH
Confidence 34444444444433
No 295
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.56 E-value=22 Score=36.84 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.8
Q ss_pred CHHHHHHHHhccC
Q 012923 143 KAETLIDAFKQYG 155 (453)
Q Consensus 143 te~~l~~~f~~~G 155 (453)
|-++|.++...+-
T Consensus 397 ~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 397 NYEEFLALLEKLS 409 (823)
T ss_pred CHHHHHHHHHccC
Confidence 4455555555443
No 296
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=30.37 E-value=41 Score=33.40 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.2
Q ss_pred CceEEEEEECCHH
Q 012923 288 PKGFCLFVYKTVD 300 (453)
Q Consensus 288 ~kg~afV~F~~~~ 300 (453)
..|-++|-|.-.+
T Consensus 477 gdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 477 GDGTAHVYYDPNE 489 (641)
T ss_pred CCCceEEEECccc
Confidence 3455666665444
No 297
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=30.03 E-value=1.9e+02 Score=25.00 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=4.1
Q ss_pred HHHHHHHcC
Q 012923 301 AAKKALEEP 309 (453)
Q Consensus 301 ~A~~Al~~~ 309 (453)
.|..||.+.
T Consensus 12 vaalaisah 20 (311)
T PF12782_consen 12 VAALAISAH 20 (311)
T ss_pred HHHHHHHHh
Confidence 344455443
No 298
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=29.09 E-value=21 Score=35.59 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=4.7
Q ss_pred EEEEccHHHHHH
Q 012923 176 FILFKTRSGARK 187 (453)
Q Consensus 176 fV~f~~~~~a~~ 187 (453)
+|...+.+-|..
T Consensus 256 LVL~PTRELaiQ 267 (691)
T KOG0338|consen 256 LVLVPTRELAIQ 267 (691)
T ss_pred EEEeccHHHHHH
Confidence 333344443333
No 299
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=28.45 E-value=1.7e+02 Score=22.93 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHhccCC-----eeEEEEcccCCCCCcceEEEEEEccHHHHHHH
Q 012923 140 WDTKAETLIDAFKQYGE-----IEDCKAVCDKVSGKSKGYGFILFKTRSGARKA 188 (453)
Q Consensus 140 ~~~te~~l~~~f~~~G~-----i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A 188 (453)
.+++.++|++-+.+.=. |.-..+-..-..|++.|||.| |.+.+.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 56788889887765322 212222233336799999988 6777766543
No 300
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.03 E-value=2.3e+02 Score=20.31 Aligned_cols=58 Identities=10% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHHHh-------ccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 133 IFVHGLGWDTKAETLIDAFK-------QYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 133 lfV~nLp~~~te~~l~~~f~-------~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
|-.++||..+|.++|..... .+..|.-++-..+... .+-||+..=.+.+.+.++-+..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHc
Confidence 56788998899999887664 3434555554444322 3557777778888888887765
No 301
>PF14893 PNMA: PNMA
Probab=27.76 E-value=54 Score=31.13 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHh
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFK 152 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~ 152 (453)
.|.|.|.+||.+|++.+|.+.+.
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHH
Confidence 46899999999999999988765
No 302
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.18 E-value=1.2e+02 Score=22.17 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=23.7
Q ss_pred CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCC
Q 012923 273 EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHK 311 (453)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~ 311 (453)
.|.++....+ .+||-||+=.+..++..|+..+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4555554332 499999999999999999998763
No 303
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.12 E-value=63 Score=27.45 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=47.4
Q ss_pred CeEEEcCCCCCCC-----HHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCe-EeEE
Q 012923 131 RKIFVHGLGWDTK-----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNR-MTAC 203 (453)
Q Consensus 131 ~~lfV~nLp~~~t-----e~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr-~~~v 203 (453)
.++++.+|+..+- ......+|.+|-+.....+++ +.++.-|.|.+++.|..|.-+++ ..|.+. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4677788875442 223445666665554444443 34577899999999999999888 457777 6666
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 6654
No 304
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.05 E-value=24 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 262 ~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
++|++.|..+.....+. +=.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v----------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV----------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh----------hhhhccCCCCHHHHHHHHHHh
Confidence 67888887654444332 224899999999999888764
No 305
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=26.98 E-value=86 Score=21.18 Aligned_cols=22 Identities=14% Similarity=0.412 Sum_probs=15.0
Q ss_pred EEEEcccCCCCCcceEEEEEEcc
Q 012923 159 DCKAVCDKVSGKSKGYGFILFKT 181 (453)
Q Consensus 159 ~v~i~~d~~~g~~~G~afV~f~~ 181 (453)
.++++.++ ...+.|+++|.|.+
T Consensus 19 ~arllLnr-Rps~~G~~WiKyED 40 (60)
T PF06613_consen 19 PARLLLNR-RPSSEGLAWIKYED 40 (60)
T ss_dssp EEEE-TTB---SSTTEEEEEETT
T ss_pred hhhhhhcc-CCCcCCeEEEEEcc
Confidence 56677765 45678999999986
No 306
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.70 E-value=14 Score=24.85 Aligned_cols=37 Identities=11% Similarity=0.259 Sum_probs=21.2
Q ss_pred cceEEEEEEcc-HHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 171 SKGYGFILFKT-RSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 171 ~~G~afV~f~~-~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
.+|||||...+ ..+.--.-..++.-+.|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999887 22222222345566778888887765
No 307
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=26.37 E-value=1.6e+02 Score=25.10 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=41.5
Q ss_pred HHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 144 e~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
-+.|..-|.+.-.|..|..+.+. .--.|-.++|.......-...+..+-..+.++.+.+..
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~ 117 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSE 117 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecC
Confidence 66888888888888888877665 45667789998876544444444444456667666654
No 308
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.99 E-value=79 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.6
Q ss_pred EEEEEECCHHHHHHHHHcCC-CccCCeE
Q 012923 291 FCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (453)
Q Consensus 291 ~afV~F~~~~~A~~Al~~~~-~~l~g~~ 317 (453)
+.+|.|.|..+|.+|-+.+. ..|..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 68899999999999999877 5554443
No 309
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=24.85 E-value=58 Score=33.75 Aligned_cols=19 Identities=5% Similarity=0.122 Sum_probs=10.7
Q ss_pred EEEEEEccHHHHHHHHHcC
Q 012923 174 YGFILFKTRSGARKALKEP 192 (453)
Q Consensus 174 ~afV~f~~~~~a~~A~~~~ 192 (453)
++|........+...|..+
T Consensus 274 ~~~M~~~~W~~~~~~i~~L 292 (595)
T PF05470_consen 274 SDYMPIEQWKKCLNNINEL 292 (595)
T ss_pred ccCcCHHHHHHHHHHHHHH
Confidence 4556666666665555543
No 310
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.69 E-value=2.6e+02 Score=20.53 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=40.2
Q ss_pred EEEecCCCCccHHHHHHHHhcc-C-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 250 IFVSNVGSELEPQKLLAFFSKY-G-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 250 l~V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
-|+--.+..++..+|++.++.+ + .|.+|+.+.-+ ...--|||+|.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444467899999999999874 4 46677665543 12334999999988888876654
No 311
>PRK11901 hypothetical protein; Reviewed
Probab=24.20 E-value=2e+02 Score=27.10 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=39.8
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEE--EECCHHHHHHHHHcCCC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLF--VYKTVDAAKKALEEPHK 311 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV--~F~~~~~A~~Al~~~~~ 311 (453)
..+|-|-.+ ..++.|..|...++ +..++|.+-...|+ .-|..| .|.+.++|..|+..|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555443 55788888888775 45566655443344 335444 49999999999999873
No 312
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=24.19 E-value=43 Score=32.81 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.5
Q ss_pred CccCCeEeEEEe
Q 012923 194 KKIGNRMTACQL 205 (453)
Q Consensus 194 ~~~~gr~~~v~~ 205 (453)
+.+.||+|.|-.
T Consensus 424 GSMrGRpItvAa 435 (620)
T COG4547 424 GSMRGRPITVAA 435 (620)
T ss_pred CCcCCcceehhH
Confidence 445566665543
No 313
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=24.18 E-value=29 Score=24.24 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=17.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHh
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFK 152 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~ 152 (453)
.+++||||.||..+-.+.=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 368999999998886665444443
No 314
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.55 E-value=1.1e+02 Score=26.02 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=41.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCC--CCceEEEEEECCHHHHHHHHHcCCCccCCeEEEE
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATG--KPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g--~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v 320 (453)
+++|.. +.....++|.++-+ |.+..|.+-+.. .+ ..+|-.||+|.+.+.|.+.+......+.-+.|..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r 181 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKR 181 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHH
Confidence 466666 33333444444444 677777664332 22 4588899999999999988877553333334433
No 315
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=22.90 E-value=4.3e+02 Score=23.95 Aligned_cols=6 Identities=0% Similarity=0.407 Sum_probs=2.2
Q ss_pred EEEecC
Q 012923 250 IFVSNV 255 (453)
Q Consensus 250 l~V~nL 255 (453)
|.+++-
T Consensus 171 ~l~~g~ 176 (390)
T KOG2192|consen 171 VLIGGK 176 (390)
T ss_pred EEecCC
Confidence 333333
No 316
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=22.57 E-value=37 Score=32.02 Aligned_cols=6 Identities=17% Similarity=0.717 Sum_probs=3.0
Q ss_pred cEEEEe
Q 012923 248 RKIFVS 253 (453)
Q Consensus 248 ~~l~V~ 253 (453)
++|||+
T Consensus 340 tSvFir 345 (449)
T KOG3871|consen 340 TSVFIR 345 (449)
T ss_pred chHHHH
Confidence 355554
No 317
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=22.40 E-value=6.8e+02 Score=23.81 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=30.6
Q ss_pred EEEEecCCCCccHHHHH---HHHhccCCcceeeeeccCCCCCCceEEEEEEC
Q 012923 249 KIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (453)
..++.+||..+.+..+. .++.+. .+.++.+..+...+.+.||+.+-+.
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEEE
Confidence 56788999888776654 455552 2234555555555788888776554
No 318
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=22.00 E-value=2.8e+02 Score=25.64 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=14.3
Q ss_pred EEEEEE--ccHHHHHHHHHcCCCc
Q 012923 174 YGFILF--KTRSGARKALKEPQKK 195 (453)
Q Consensus 174 ~afV~f--~~~~~a~~A~~~~~~~ 195 (453)
|||+.| .+......+++.+...
T Consensus 124 ~~~~s~lnl~~~~~~~~ikqL~~y 147 (308)
T KOG3034|consen 124 FGFLSFLNLTARKDTKCIKQLQEY 147 (308)
T ss_pred ceEEEEeehhhhccchHHHHHHHH
Confidence 565554 5666777788777644
No 319
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=21.81 E-value=30 Score=35.29 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.5
Q ss_pred CCccHHHHHHHHh
Q 012923 257 SELEPQKLLAFFS 269 (453)
Q Consensus 257 ~~~t~~~l~~~F~ 269 (453)
..+|-.+|...|.
T Consensus 476 kPmTTkdLL~kFk 488 (527)
T PF05793_consen 476 KPMTTKDLLKKFK 488 (527)
T ss_dssp S-B-HHHHHHHTS
T ss_pred CCccHHHHHHHHH
Confidence 3445555555554
No 320
>PHA03378 EBNA-3B; Provisional
Probab=21.69 E-value=9.7e+02 Score=25.31 Aligned_cols=7 Identities=43% Similarity=0.141 Sum_probs=3.1
Q ss_pred EEEEEcc
Q 012923 318 LNCQRAI 324 (453)
Q Consensus 318 l~v~~a~ 324 (453)
|.+.|+-
T Consensus 685 ~~~~~ap 691 (991)
T PHA03378 685 LPIQWAP 691 (991)
T ss_pred cccccCc
Confidence 4444443
No 321
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=21.51 E-value=3.1e+02 Score=19.60 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=38.0
Q ss_pred EEEecCCCCccHHHHHHHHh-------ccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 250 IFVSNVGSELEPQKLLAFFS-------KYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 250 l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
|..++||..+|.++|..+.. .+..|..++...... ..+-||+.+=.+.+...++-+.-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHHc
Confidence 66789999899999887654 344556665544432 22566666666777777766654
No 322
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=21.41 E-value=56 Score=33.12 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=3.9
Q ss_pred ceEEEEEEc
Q 012923 172 KGYGFILFK 180 (453)
Q Consensus 172 ~G~afV~f~ 180 (453)
+||-|.+|.
T Consensus 320 rG~rFSTYA 328 (509)
T PRK05901 320 KGYKFSTYA 328 (509)
T ss_pred cCCCchhhh
Confidence 344444444
No 323
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.34 E-value=54 Score=32.77 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHH
Q 012923 131 RKIFVHGLGWDTKAETLIDAF 151 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f 151 (453)
++-.|+.||--++.++...++
T Consensus 799 rk~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHHhcCCcccchHHHHHHh
Confidence 345566788777777665554
No 324
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.86 E-value=3.3e+02 Score=19.60 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=39.6
Q ss_pred EEEecCCCCccHHHHHHHHhcc-C-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 250 IFVSNVGSELEPQKLLAFFSKY-G-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 250 l~V~nLp~~~t~~~l~~~F~~~-G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
-|+-.++..++..+|++.++.+ + .|..|+.+.-+ ...--|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 4555578999999999998874 3 45666655443 12234999999888887765554
No 325
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.70 E-value=77 Score=19.00 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhccC
Q 012923 140 WDTKAETLIDAFKQYG 155 (453)
Q Consensus 140 ~~~te~~l~~~f~~~G 155 (453)
.+++++.|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998654
No 326
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=20.65 E-value=40 Score=31.07 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=6.0
Q ss_pred HhccCCcceeee
Q 012923 268 FSKYGEIEEGPL 279 (453)
Q Consensus 268 F~~~G~i~~v~i 279 (453)
|..-|...+.+|
T Consensus 224 fGk~grtKythL 235 (276)
T PF06991_consen 224 FGKSGRTKYTHL 235 (276)
T ss_pred hccccCcccccc
Confidence 555555544444
No 327
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=20.61 E-value=33 Score=32.28 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC
Q 012923 144 AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK 194 (453)
Q Consensus 144 e~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~ 194 (453)
...|.+++.+.|.|..-.+.+.- +.|.+||.+-..+++.++++.+..
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHh
Confidence 46788899999988766555543 568899999999999999998773
No 328
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.61 E-value=1.6e+02 Score=29.87 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=45.9
Q ss_pred EEEcCCCCCC---CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEe
Q 012923 133 IFVHGLGWDT---KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (453)
Q Consensus 133 lfV~nLp~~~---te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~ 201 (453)
=+||||+.-. ....|..+-.+||.|-.+++-.. =.|...+.+.|+.|+......+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 4677877433 34566777779999998886543 367788999999999998888888886
No 329
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.48 E-value=1.4e+02 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=19.7
Q ss_pred CcceeeeeccCCCCCCceEEEEEECC
Q 012923 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (453)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (453)
.|++|+|-+-...++-++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36677776655568889999999976
No 330
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.35 E-value=1.2e+02 Score=29.02 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=39.5
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCC-cceeeeeccCCC--CCCceEEEEEECCHHHHHHHHHc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEE 308 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~ 308 (453)
..|.|++||...++.+|.+...+|-. +....+...... ..-.+++||.|...++...=...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 58999999999999999888777643 223333221111 11256799999999884443333
No 331
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.33 E-value=1.6e+02 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.3
Q ss_pred CeeEEEEcccCCCCCcceEEEEEEcc
Q 012923 156 EIEDCKAVCDKVSGKSKGYGFILFKT 181 (453)
Q Consensus 156 ~i~~v~i~~d~~~g~~~G~afV~f~~ 181 (453)
.|.+|+|..-...++-++||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887666568999999999976
No 332
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.24 E-value=2e+02 Score=21.29 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=29.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEE
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILF 179 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f 179 (453)
.-|||+|++..+-+.-...+.+..+.=.-+-+..+. ...||+|-++
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEe
Confidence 469999999888776555555544433333233332 2678999876
Done!