Query 012923
Match_columns 453
No_of_seqs 426 out of 4075
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 18:50:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 1.6E-36 5.5E-41 267.0 21.8 179 126-330 9-187 (196)
2 4f02_A Polyadenylate-binding p 100.0 9.5E-37 3.3E-41 271.5 13.0 166 129-326 14-181 (213)
3 2cjk_A Nuclear polyadenylated 100.0 1.1E-35 3.8E-40 254.6 15.3 164 129-326 2-166 (167)
4 3md3_A Nuclear and cytoplasmic 100.0 1.2E-34 4.1E-39 247.9 19.7 163 131-324 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-34 6.5E-39 247.2 19.5 162 130-323 3-168 (168)
6 2qfj_A FBP-interacting repress 100.0 4E-35 1.4E-39 262.2 15.8 179 130-329 28-208 (216)
7 1fxl_A Paraneoplastic encephal 100.0 3.8E-34 1.3E-38 245.0 19.7 162 130-323 2-167 (167)
8 3nmr_A Cugbp ELAV-like family 100.0 3.6E-33 1.2E-37 240.9 18.4 163 129-323 2-174 (175)
9 2g4b_A Splicing factor U2AF 65 100.0 3E-32 1E-36 234.4 17.3 157 129-324 3-172 (172)
10 1fje_B Nucleolin RBD12, protei 100.0 8.4E-33 2.9E-37 238.6 13.0 165 126-326 9-174 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 1E-31 3.4E-36 236.7 19.2 181 129-328 3-196 (198)
12 3tyt_A Heterogeneous nuclear r 100.0 1.5E-31 5E-36 235.2 18.9 188 129-323 3-204 (205)
13 3pgw_A U1-A; protein-RNA compl 100.0 6.4E-31 2.2E-35 244.7 22.3 191 126-324 5-281 (282)
14 3smz_A Protein raver-1, ribonu 100.0 3.6E-31 1.2E-35 246.6 20.6 172 127-328 92-266 (284)
15 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-31 1.1E-35 248.0 18.6 172 129-327 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 1.1E-30 3.7E-35 235.1 20.0 191 125-325 29-227 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.3E-30 4.6E-35 229.4 16.9 186 130-325 3-196 (198)
18 3sde_A Paraspeckle component 1 100.0 3E-30 1E-34 236.8 17.4 155 127-326 19-179 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 4.4E-30 1.5E-34 240.3 18.3 160 126-327 37-198 (292)
20 3smz_A Protein raver-1, ribonu 100.0 6.9E-30 2.4E-34 238.0 19.4 154 129-327 21-176 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.1E-24 1.4E-28 180.6 13.6 147 159-327 2-151 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.6E-22 5.6E-27 160.5 10.0 108 130-263 5-113 (115)
23 2i2y_A Fusion protein consists 99.8 3E-21 1E-25 161.2 10.3 137 168-326 9-148 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 5.1E-21 1.7E-25 147.2 10.1 80 246-325 18-98 (99)
25 2lxi_A RNA-binding protein 10; 99.8 5.5E-21 1.9E-25 144.7 9.3 81 248-328 2-85 (91)
26 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-20 4.6E-25 144.8 10.6 79 129-207 18-97 (99)
27 3pgw_S U1-70K; protein-RNA com 99.8 4.9E-21 1.7E-25 186.7 10.3 82 246-327 101-183 (437)
28 2lxi_A RNA-binding protein 10; 99.8 1.5E-20 5E-25 142.3 8.3 82 130-211 1-85 (91)
29 2lea_A Serine/arginine-rich sp 99.8 1.4E-20 5E-25 153.5 8.3 123 174-329 6-130 (135)
30 2lkz_A RNA-binding protein 5; 99.8 1.5E-20 5E-25 142.8 7.6 79 247-325 9-94 (95)
31 3q2s_C Cleavage and polyadenyl 99.8 8E-21 2.7E-25 169.4 6.8 79 247-325 68-149 (229)
32 2cqd_A RNA-binding region cont 99.8 2.5E-19 8.7E-24 142.5 14.3 87 243-329 13-99 (116)
33 2lkz_A RNA-binding protein 5; 99.8 3.2E-20 1.1E-24 140.9 8.0 80 128-207 7-93 (95)
34 3s8s_A Histone-lysine N-methyl 99.8 9.4E-20 3.2E-24 142.8 10.3 80 246-325 5-85 (110)
35 3s8s_A Histone-lysine N-methyl 99.8 1.2E-19 4.1E-24 142.2 10.8 80 128-207 4-84 (110)
36 2dgo_A Cytotoxic granule-assoc 99.8 4.8E-19 1.7E-23 140.7 14.4 87 243-329 11-98 (115)
37 1u6f_A Tcubp1, RNA-binding pro 99.8 5.5E-19 1.9E-23 145.5 14.5 86 242-327 37-123 (139)
38 1whw_A Hypothetical protein ri 99.8 3.4E-19 1.2E-23 137.6 12.3 84 245-328 6-90 (99)
39 3s7r_A Heterogeneous nuclear r 99.8 2.5E-19 8.6E-24 134.7 11.0 81 126-206 7-87 (87)
40 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.4E-19 8.1E-24 150.7 11.9 83 245-327 37-120 (156)
41 1x5t_A Splicing factor 3B subu 99.8 4.1E-19 1.4E-23 136.3 11.7 83 246-328 4-88 (96)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.3E-19 7.9E-24 135.0 9.7 82 246-327 5-87 (87)
43 2dnz_A Probable RNA-binding pr 99.8 4.8E-19 1.6E-23 135.6 11.4 82 246-327 4-86 (95)
44 2dgs_A DAZ-associated protein 99.8 5.8E-19 2E-23 136.2 11.9 82 245-327 8-90 (99)
45 2fy1_A RNA-binding motif prote 99.8 9E-19 3.1E-23 139.0 13.0 81 246-327 6-87 (116)
46 2cqd_A RNA-binding region cont 99.8 8.9E-19 3E-23 139.4 12.7 87 125-211 12-98 (116)
47 2rs2_A Musashi-1, RNA-binding 99.8 5.4E-19 1.8E-23 138.6 11.2 87 125-211 20-106 (109)
48 2cq0_A Eukaryotic translation 99.8 5.1E-19 1.7E-23 137.6 11.0 85 244-328 12-97 (103)
49 1x5s_A Cold-inducible RNA-bind 99.8 5.5E-19 1.9E-23 137.2 10.8 84 245-328 10-94 (102)
50 3md1_A Nuclear and cytoplasmic 99.8 5.2E-19 1.8E-23 131.8 10.2 80 248-327 2-82 (83)
51 1x5u_A Splicing factor 3B subu 99.8 8.2E-19 2.8E-23 137.0 11.8 85 244-328 12-97 (105)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.9E-19 1.7E-23 137.5 10.4 83 245-327 10-93 (102)
53 2cpz_A CUG triplet repeat RNA- 99.8 6.4E-19 2.2E-23 140.0 11.3 86 243-328 21-107 (115)
54 2dnm_A SRP46 splicing factor; 99.8 4.9E-19 1.7E-23 137.7 9.9 84 244-327 10-94 (103)
55 1s79_A Lupus LA protein; RRM, 99.8 4.7E-19 1.6E-23 136.9 9.6 81 126-207 7-87 (103)
56 3s7r_A Heterogeneous nuclear r 99.8 7.9E-19 2.7E-23 132.0 10.5 79 245-323 9-87 (87)
57 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.8E-19 1.6E-23 150.2 10.2 142 177-330 11-156 (165)
58 1whw_A Hypothetical protein ri 99.8 1.6E-18 5.5E-23 133.7 12.4 85 127-211 5-90 (99)
59 3ex7_B RNA-binding protein 8A; 99.8 4.9E-19 1.7E-23 143.2 9.8 87 243-329 18-105 (126)
60 3p5t_L Cleavage and polyadenyl 99.8 1.4E-19 4.9E-24 136.9 6.2 81 248-328 2-85 (90)
61 2rs2_A Musashi-1, RNA-binding 99.8 8E-19 2.7E-23 137.7 10.6 85 244-328 22-106 (109)
62 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.5E-23 133.3 12.6 87 126-212 6-92 (99)
63 1p27_B RNA-binding protein 8A; 99.8 7.4E-19 2.5E-23 137.5 10.3 86 243-328 19-105 (106)
64 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.6E-19 2.6E-23 132.1 9.9 81 129-209 5-86 (87)
65 2cph_A RNA binding motif prote 99.8 1.4E-18 4.7E-23 136.2 11.5 86 243-328 11-99 (107)
66 2dng_A Eukaryotic translation 99.8 1.7E-18 5.9E-23 134.6 11.9 82 244-327 12-94 (103)
67 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.3E-23 134.6 11.1 83 244-327 14-97 (100)
68 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-18 4.3E-23 136.2 11.0 84 244-327 10-97 (106)
69 1wi8_A EIF-4B, eukaryotic tran 99.8 1.6E-18 5.3E-23 135.1 11.5 81 245-327 13-95 (104)
70 2cpf_A RNA binding motif prote 99.8 8.4E-19 2.9E-23 135.1 9.8 83 246-328 4-90 (98)
71 2x1f_A MRNA 3'-END-processing 99.8 1E-18 3.4E-23 134.0 10.0 81 247-327 2-83 (96)
72 2dgo_A Cytotoxic granule-assoc 99.8 3.2E-18 1.1E-22 136.0 13.1 88 125-212 10-98 (115)
73 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-18 4.9E-23 138.0 11.1 88 125-212 20-108 (115)
74 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.8E-19 2.7E-23 131.4 9.0 79 246-324 6-85 (85)
75 3ns6_A Eukaryotic translation 99.8 2.6E-19 8.9E-24 138.1 6.6 80 247-326 6-93 (100)
76 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 135.8 10.4 82 246-328 8-92 (104)
77 2cq0_A Eukaryotic translation 99.8 1.5E-18 5E-23 135.0 10.8 86 126-211 11-97 (103)
78 3md1_A Nuclear and cytoplasmic 99.8 1.7E-18 5.7E-23 129.0 10.6 79 131-209 2-81 (83)
79 2cpe_A RNA-binding protein EWS 99.8 1.6E-18 5.5E-23 137.2 11.1 86 243-328 11-105 (113)
80 1x5t_A Splicing factor 3B subu 99.8 2.1E-18 7.3E-23 132.3 11.4 84 128-211 3-88 (96)
81 4f25_A Polyadenylate-binding p 99.8 9.3E-19 3.2E-23 138.8 9.5 79 247-327 5-84 (115)
82 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.8E-23 133.6 9.6 82 244-325 12-94 (95)
83 1x5u_A Splicing factor 3B subu 99.8 2.7E-18 9.2E-23 134.0 11.9 87 125-211 10-97 (105)
84 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5.1E-23 129.9 10.0 80 127-206 4-84 (85)
85 2d9p_A Polyadenylate-binding p 99.8 1.6E-18 5.3E-23 134.8 10.5 84 243-328 11-95 (103)
86 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-18 5.3E-23 136.6 10.5 86 243-328 22-108 (110)
87 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-18 8.3E-23 134.3 11.5 83 245-328 13-99 (105)
88 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-18 5.1E-23 132.6 10.0 81 244-324 13-94 (94)
89 1x4h_A RNA-binding protein 28; 99.8 2.5E-18 8.6E-23 135.7 11.6 88 125-212 10-104 (111)
90 2dnz_A Probable RNA-binding pr 99.8 1.9E-18 6.6E-23 132.2 10.6 84 128-211 3-87 (95)
91 1s79_A Lupus LA protein; RRM, 99.8 1E-18 3.5E-23 135.1 9.0 78 246-325 10-88 (103)
92 3q2s_C Cleavage and polyadenyl 99.8 7.7E-19 2.6E-23 156.5 9.5 79 129-207 67-148 (229)
93 2do0_A HnRNP M, heterogeneous 99.8 5.1E-18 1.7E-22 134.6 13.2 81 245-326 13-94 (114)
94 1x4h_A RNA-binding protein 28; 99.8 2.6E-18 8.8E-23 135.6 11.3 85 244-328 12-103 (111)
95 3p5t_L Cleavage and polyadenyl 99.8 3.7E-19 1.3E-23 134.6 6.1 80 131-210 2-84 (90)
96 2do4_A Squamous cell carcinoma 99.8 2.6E-18 9E-23 132.8 11.1 85 125-210 12-97 (100)
97 2la6_A RNA-binding protein FUS 99.8 1.7E-18 5.9E-23 133.5 10.0 82 243-324 9-99 (99)
98 3ns6_A Eukaryotic translation 99.8 4.9E-19 1.7E-23 136.6 6.8 80 128-207 4-91 (100)
99 2cqg_A TDP-43, TAR DNA-binding 99.8 4.5E-18 1.5E-22 132.2 12.3 85 244-329 12-96 (103)
100 2hgn_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 145.9 5.1 79 246-327 45-124 (139)
101 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.5E-23 133.8 10.4 87 126-212 8-95 (102)
102 2cqc_A Arginine/serine-rich sp 99.8 2.4E-18 8.4E-23 131.7 10.5 83 125-207 10-93 (95)
103 1x4b_A Heterogeneous nuclear r 99.8 2.8E-18 9.7E-23 136.4 11.3 83 245-328 25-108 (116)
104 2dnm_A SRP46 splicing factor; 99.8 2E-18 6.7E-23 134.3 10.1 86 126-211 9-95 (103)
105 1x5s_A Cold-inducible RNA-bind 99.8 2.3E-18 8E-23 133.6 10.5 86 126-211 8-94 (102)
106 2cqg_A TDP-43, TAR DNA-binding 99.8 5.4E-18 1.8E-22 131.8 12.5 87 125-212 10-96 (103)
107 2cpf_A RNA binding motif prote 99.8 2.5E-18 8.6E-23 132.4 10.5 84 128-211 3-90 (98)
108 2x1f_A MRNA 3'-END-processing 99.8 2.6E-18 8.9E-23 131.7 10.6 81 130-210 2-83 (96)
109 2e5h_A Zinc finger CCHC-type a 99.8 2.7E-18 9.4E-23 131.1 10.7 81 126-206 12-93 (94)
110 2jrs_A RNA-binding protein 39; 99.8 1.9E-18 6.4E-23 135.2 9.8 84 243-326 22-106 (108)
111 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-18 4.8E-23 133.0 8.8 81 126-212 12-95 (105)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.6E-19 2.6E-23 128.8 7.0 76 131-206 1-76 (77)
113 2m2b_A RNA-binding protein 10; 99.8 9.9E-19 3.4E-23 142.2 8.3 83 243-326 19-108 (131)
114 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.6E-23 133.7 7.9 79 245-329 14-95 (105)
115 2div_A TRNA selenocysteine ass 99.8 2.3E-18 7.8E-23 132.9 9.9 81 246-326 8-94 (99)
116 2cqp_A RNA-binding protein 12; 99.8 2.3E-18 7.7E-23 132.6 9.8 82 245-326 13-95 (98)
117 2jrs_A RNA-binding protein 39; 99.8 2.1E-18 7.3E-23 134.9 9.6 86 124-209 20-106 (108)
118 2dh8_A DAZ-associated protein 99.8 1.3E-18 4.6E-23 135.7 8.4 85 243-328 12-97 (105)
119 2cph_A RNA binding motif prote 99.8 4.4E-18 1.5E-22 133.3 11.4 87 125-211 10-99 (107)
120 1p27_B RNA-binding protein 8A; 99.8 2.9E-18 1E-22 134.1 10.3 83 127-209 20-103 (106)
121 2cq3_A RNA-binding protein 9; 99.8 7.4E-18 2.5E-22 131.0 12.4 85 243-329 11-96 (103)
122 3ucg_A Polyadenylate-binding p 99.8 3.3E-18 1.1E-22 129.2 10.1 78 247-325 6-84 (89)
123 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-18 2.1E-22 131.4 11.8 83 244-328 12-95 (103)
124 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.8E-19 3.3E-23 128.2 6.8 77 248-324 1-77 (77)
125 2fy1_A RNA-binding motif prote 99.8 6E-18 2E-22 134.2 11.8 84 127-211 4-88 (116)
126 2mss_A Protein (musashi1); RNA 99.8 1.8E-18 6E-23 126.1 8.0 74 249-323 1-75 (75)
127 2hvz_A Splicing factor, argini 99.8 1.7E-18 5.7E-23 134.1 8.4 76 131-211 1-77 (101)
128 2div_A TRNA selenocysteine ass 99.8 3.7E-18 1.3E-22 131.7 10.3 83 127-209 6-94 (99)
129 2dnh_A Bruno-like 5, RNA bindi 99.8 4.9E-18 1.7E-22 132.5 11.0 86 126-212 11-100 (105)
130 2dis_A Unnamed protein product 99.8 8.4E-18 2.9E-22 132.1 12.3 84 246-329 7-95 (109)
131 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-18 1.4E-22 133.3 10.3 87 125-211 8-98 (106)
132 2dgw_A Probable RNA-binding pr 99.8 7.4E-18 2.5E-22 127.8 11.5 80 245-327 8-88 (91)
133 1wez_A HnRNP H', FTP-3, hetero 99.8 3.2E-18 1.1E-22 132.3 9.5 79 245-326 13-92 (102)
134 2mss_A Protein (musashi1); RNA 99.8 2.1E-18 7.2E-23 125.7 8.0 75 132-206 1-75 (75)
135 2cpe_A RNA-binding protein EWS 99.8 5.2E-18 1.8E-22 134.3 10.8 86 126-211 11-105 (113)
136 3n9u_C Cleavage and polyadenyl 99.8 3.5E-18 1.2E-22 142.6 10.3 80 246-325 54-136 (156)
137 3n9u_C Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 142.1 10.7 79 129-207 54-135 (156)
138 1wg5_A Heterogeneous nuclear r 99.7 6.8E-18 2.3E-22 131.2 11.2 82 127-209 12-94 (104)
139 1wez_A HnRNP H', FTP-3, hetero 99.7 2.5E-18 8.5E-23 132.9 8.6 81 127-209 12-92 (102)
140 2ywk_A Putative RNA-binding pr 99.7 4.6E-18 1.6E-22 130.1 10.0 81 126-207 12-93 (95)
141 2jwn_A Embryonic polyadenylate 99.7 6.2E-18 2.1E-22 136.2 11.2 81 246-327 35-116 (124)
142 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-18 5.3E-23 137.8 7.5 104 127-273 5-109 (115)
143 2la6_A RNA-binding protein FUS 99.7 4.5E-18 1.5E-22 131.2 9.9 82 125-206 8-98 (99)
144 2dng_A Eukaryotic translation 99.7 1E-17 3.5E-22 130.1 12.0 84 126-211 11-95 (103)
145 2ywk_A Putative RNA-binding pr 99.7 3.5E-18 1.2E-22 130.8 9.2 81 244-325 13-94 (95)
146 2hgl_A HNRPF protein, heteroge 99.7 3.9E-18 1.3E-22 138.2 9.9 78 246-325 43-124 (136)
147 2kxn_B Transformer-2 protein h 99.7 2.2E-18 7.5E-23 139.2 8.3 85 243-327 42-127 (129)
148 3r27_A HnRNP L, heterogeneous 99.7 4.9E-18 1.7E-22 128.6 9.7 79 242-326 16-97 (100)
149 2dh8_A DAZ-associated protein 99.7 2.9E-18 9.9E-23 133.8 8.7 86 126-211 12-97 (105)
150 2ek1_A RNA-binding protein 12; 99.7 2.1E-18 7.2E-23 132.0 7.8 80 246-325 14-94 (95)
151 2d9p_A Polyadenylate-binding p 99.7 6.3E-18 2.2E-22 131.4 10.6 86 125-212 10-96 (103)
152 1oo0_B CG8781-PA, drosophila Y 99.7 6.3E-18 2.1E-22 133.1 10.7 85 126-210 22-107 (110)
153 2khc_A Testis-specific RNP-typ 99.7 4.3E-18 1.5E-22 135.9 9.9 82 125-206 35-117 (118)
154 2ad9_A Polypyrimidine tract-bi 99.7 6E-18 2.1E-22 132.9 10.4 81 244-330 28-111 (119)
155 2khc_A Testis-specific RNP-typ 99.7 4.9E-18 1.7E-22 135.6 10.2 82 243-324 36-118 (118)
156 1x4d_A Matrin 3; structural ge 99.7 3.6E-18 1.2E-22 130.8 8.9 76 246-327 14-93 (102)
157 1p1t_A Cleavage stimulation fa 99.7 2.2E-18 7.4E-23 134.3 7.9 82 246-327 7-89 (104)
158 1iqt_A AUF1, heterogeneous nuc 99.7 1.7E-18 5.9E-23 126.2 6.8 75 132-206 1-75 (75)
159 3ucg_A Polyadenylate-binding p 99.7 7.7E-18 2.6E-22 127.2 10.6 78 130-208 6-84 (89)
160 2cpy_A RNA-binding protein 12; 99.7 1.1E-18 3.8E-23 138.2 5.9 81 245-327 13-95 (114)
161 1wi8_A EIF-4B, eukaryotic tran 99.7 1.2E-17 4.1E-22 130.0 11.7 83 127-211 12-96 (104)
162 2dhg_A TRNA selenocysteine ass 99.7 6.5E-18 2.2E-22 131.6 10.2 85 127-212 6-93 (104)
163 2cpy_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 135.5 8.5 82 126-208 11-93 (114)
164 1wg5_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 130.2 11.2 81 245-326 13-94 (104)
165 2dgx_A KIAA0430 protein; RRM d 99.7 7.3E-18 2.5E-22 129.0 10.1 79 246-327 8-91 (96)
166 3ulh_A THO complex subunit 4; 99.7 6.2E-18 2.1E-22 132.4 9.9 80 244-324 26-106 (107)
167 1x4b_A Heterogeneous nuclear r 99.7 7.9E-18 2.7E-22 133.9 10.6 83 130-212 27-109 (116)
168 2cq1_A PTB-like protein L; RRM 99.7 1.1E-17 3.6E-22 128.4 10.7 80 244-329 12-94 (101)
169 4a8x_A RNA-binding protein wit 99.7 4.2E-18 1.4E-22 128.3 8.4 80 247-326 4-85 (88)
170 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-17 4.1E-22 137.4 11.9 88 125-212 37-125 (139)
171 2dgv_A HnRNP M, heterogeneous 99.7 6.8E-18 2.3E-22 128.3 9.3 80 246-327 7-87 (92)
172 2dgu_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 129.0 11.6 78 245-330 9-87 (103)
173 3r27_A HnRNP L, heterogeneous 99.7 8.8E-18 3E-22 127.2 9.8 77 127-209 18-97 (100)
174 2wbr_A GW182, gawky, LD47780P; 99.7 3.9E-18 1.3E-22 124.1 7.4 72 247-324 7-79 (89)
175 2dis_A Unnamed protein product 99.7 1.6E-17 5.5E-22 130.5 11.6 85 127-211 5-94 (109)
176 2kxn_B Transformer-2 protein h 99.7 4.6E-18 1.6E-22 137.4 8.6 85 125-209 41-126 (129)
177 2dgw_A Probable RNA-binding pr 99.7 2E-17 6.9E-22 125.4 11.7 82 126-210 6-88 (91)
178 2ki2_A SS-DNA binding protein 99.7 1.8E-18 6.3E-23 130.9 5.7 80 248-328 2-82 (90)
179 2cqp_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 130.5 8.4 82 127-208 12-94 (98)
180 2do0_A HnRNP M, heterogeneous 99.7 2.1E-17 7.3E-22 131.0 12.2 83 126-209 11-94 (114)
181 1x4a_A Splicing factor, argini 99.7 2E-17 6.9E-22 129.9 11.8 81 244-327 19-100 (109)
182 4a8x_A RNA-binding protein wit 99.7 8.7E-18 3E-22 126.6 9.3 80 129-208 3-84 (88)
183 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4.1E-22 130.8 10.4 81 126-207 25-106 (107)
184 2cq3_A RNA-binding protein 9; 99.7 2.6E-17 9E-22 127.8 12.2 86 125-212 10-96 (103)
185 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1E-17 3.5E-22 141.9 10.7 86 126-211 68-154 (165)
186 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-17 7.7E-22 128.2 11.9 85 125-211 10-95 (103)
187 2ek1_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 131.0 6.9 80 128-207 13-93 (95)
188 2hgm_A HNRPF protein, heteroge 99.7 5.7E-18 1.9E-22 135.0 8.4 79 127-207 39-119 (126)
189 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.5E-18 8.4E-23 132.8 6.0 83 243-327 15-99 (100)
190 1p1t_A Cleavage stimulation fa 99.7 6.7E-18 2.3E-22 131.5 8.6 80 130-209 8-88 (104)
191 1x4c_A Splicing factor, argini 99.7 3E-17 1E-21 128.6 12.2 76 245-327 13-94 (108)
192 3ex7_B RNA-binding protein 8A; 99.7 1.1E-17 3.6E-22 135.3 9.9 88 125-212 17-105 (126)
193 1wex_A Hypothetical protein (r 99.7 1.9E-17 6.5E-22 127.8 10.8 77 245-327 13-92 (104)
194 1iqt_A AUF1, heterogeneous nuc 99.7 3.1E-18 1E-22 124.8 6.0 75 249-323 1-75 (75)
195 1x4e_A RNA binding motif, sing 99.7 1.8E-18 6.2E-23 129.4 4.9 80 128-207 3-83 (85)
196 2cq4_A RNA binding motif prote 99.7 4.7E-18 1.6E-22 134.7 7.6 82 245-327 23-105 (114)
197 2dnn_A RNA-binding protein 12; 99.7 1.2E-17 4E-22 130.1 9.5 76 130-207 16-91 (109)
198 2wbr_A GW182, gawky, LD47780P; 99.7 7.7E-18 2.6E-22 122.5 7.7 73 129-207 6-79 (89)
199 2m2b_A RNA-binding protein 10; 99.7 3.1E-18 1.1E-22 139.2 6.4 83 126-209 19-108 (131)
200 1x4e_A RNA binding motif, sing 99.7 1.5E-18 5.1E-23 129.8 4.1 79 246-324 4-83 (85)
201 2db1_A Heterogeneous nuclear r 99.7 8.9E-18 3.1E-22 133.6 8.7 80 127-207 14-96 (118)
202 2cpi_A CCR4-NOT transcription 99.7 1E-17 3.4E-22 131.9 8.9 83 245-327 13-102 (111)
203 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-17 7.6E-22 126.3 10.5 80 128-210 7-91 (96)
204 2fc9_A NCL protein; structure 99.7 2.3E-17 7.8E-22 127.7 10.7 80 244-327 12-92 (101)
205 2ad9_A Polypyrimidine tract-bi 99.7 8.7E-18 3E-22 132.0 8.4 81 126-212 27-110 (119)
206 2db1_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 132.8 9.4 80 245-326 15-98 (118)
207 2dha_A FLJ20171 protein; RRM d 99.7 5.9E-18 2E-22 134.6 7.4 79 128-207 21-103 (123)
208 2hgl_A HNRPF protein, heteroge 99.7 8.1E-18 2.8E-22 136.4 8.4 81 125-207 39-123 (136)
209 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.3E-17 1.1E-21 137.6 12.4 85 126-210 35-120 (156)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.9E-18 2.7E-22 129.9 7.7 81 127-209 16-98 (100)
211 2dgv_A HnRNP M, heterogeneous 99.7 2.1E-17 7.3E-22 125.5 9.9 82 127-210 5-87 (92)
212 2hvz_A Splicing factor, argini 99.7 2.7E-17 9.2E-22 127.3 10.7 76 248-328 1-77 (101)
213 2cq1_A PTB-like protein L; RRM 99.7 2.2E-17 7.4E-22 126.7 10.0 81 126-212 11-94 (101)
214 2kt5_A RNA and export factor-b 99.7 4.9E-17 1.7E-21 130.9 12.5 84 243-327 31-115 (124)
215 2dnn_A RNA-binding protein 12; 99.7 1.3E-17 4.6E-22 129.8 8.9 76 247-325 16-92 (109)
216 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.9E-22 132.5 8.6 79 129-208 24-103 (114)
217 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-17 9.5E-22 135.5 11.3 81 243-323 59-140 (140)
218 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.7E-22 134.7 8.2 82 244-326 22-104 (124)
219 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.5E-22 132.4 8.6 84 245-328 23-107 (115)
220 1x4d_A Matrin 3; structural ge 99.7 1.3E-17 4.6E-22 127.6 8.0 77 128-210 13-93 (102)
221 2ki2_A SS-DNA binding protein 99.7 5E-18 1.7E-22 128.5 5.6 79 131-210 2-81 (90)
222 2nlw_A Eukaryotic translation 99.7 1.9E-17 6.3E-22 129.0 8.9 80 246-327 14-101 (105)
223 1fj7_A Nucleolin RBD1, protein 99.7 6.2E-18 2.1E-22 130.9 6.1 80 246-327 16-96 (101)
224 2jvr_A Nucleolar protein 3; RN 99.7 2E-17 6.9E-22 129.0 8.9 78 246-327 27-106 (111)
225 2kt5_A RNA and export factor-b 99.7 3.8E-17 1.3E-21 131.5 10.8 84 127-211 32-116 (124)
226 2err_A Ataxin-2-binding protei 99.7 2.8E-17 9.5E-22 128.9 9.7 84 124-209 23-107 (109)
227 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5E-22 135.6 8.3 87 125-211 42-129 (135)
228 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.8E-17 1.3E-21 134.7 10.8 82 125-206 58-140 (140)
229 1wex_A Hypothetical protein (r 99.7 2.7E-17 9.2E-22 127.0 9.2 80 127-212 12-94 (104)
230 1x4g_A Nucleolysin TIAR; struc 99.7 3.7E-17 1.3E-21 128.4 10.2 80 244-329 22-102 (109)
231 2fc8_A NCL protein; structure 99.7 3.8E-17 1.3E-21 126.7 10.1 81 244-327 12-93 (102)
232 1x4a_A Splicing factor, argini 99.7 5.6E-17 1.9E-21 127.4 11.1 84 125-211 17-101 (109)
233 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-17 3.7E-22 130.8 7.0 81 126-207 7-90 (107)
234 2hgm_A HNRPF protein, heteroge 99.7 1.4E-17 4.8E-22 132.7 7.7 79 245-325 40-120 (126)
235 1x4f_A Matrin 3; structural ge 99.7 2.1E-17 7.2E-22 128.4 8.4 78 244-327 22-103 (112)
236 2dnq_A RNA-binding protein 4B; 99.7 5E-17 1.7E-21 122.8 10.4 75 246-328 7-82 (90)
237 2err_A Ataxin-2-binding protei 99.7 2.5E-17 8.5E-22 129.2 8.9 82 243-326 25-107 (109)
238 2nlw_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 127.4 9.6 82 126-209 11-100 (105)
239 2kn4_A Immunoglobulin G-bindin 99.7 5.7E-17 1.9E-21 136.5 11.5 84 126-209 66-150 (158)
240 2jwn_A Embryonic polyadenylate 99.7 5.7E-17 1.9E-21 130.5 11.0 79 130-209 36-115 (124)
241 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-17 5.4E-22 129.9 7.4 80 245-326 9-92 (107)
242 2krb_A Eukaryotic translation 99.7 1.6E-17 5.3E-22 122.9 6.8 71 248-320 2-80 (81)
243 2krb_A Eukaryotic translation 99.7 2.1E-17 7.1E-22 122.2 7.3 72 130-203 1-80 (81)
244 1x5o_A RNA binding motif, sing 99.7 4.5E-17 1.5E-21 129.1 9.7 79 245-324 23-110 (114)
245 2a3j_A U1 small nuclear ribonu 99.7 4.5E-17 1.5E-21 130.4 9.7 80 245-327 27-111 (127)
246 1wel_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 134.1 6.6 81 127-208 22-103 (124)
247 2hgn_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 136.0 5.8 83 126-210 42-124 (139)
248 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4.1E-23 138.6 0.0 82 246-327 6-96 (116)
249 2cpi_A CCR4-NOT transcription 99.7 3.1E-17 1.1E-21 129.1 7.9 83 128-210 13-102 (111)
250 2dha_A FLJ20171 protein; RRM d 99.7 2.8E-17 9.7E-22 130.7 7.6 79 246-325 22-104 (123)
251 2jvr_A Nucleolar protein 3; RN 99.7 5.9E-17 2E-21 126.3 9.2 79 127-209 25-105 (111)
252 1why_A Hypothetical protein ri 99.7 6.1E-17 2.1E-21 124.2 9.2 77 245-327 15-94 (97)
253 2ytc_A PRE-mRNA-splicing facto 99.7 9E-17 3.1E-21 120.1 9.9 75 244-324 9-85 (85)
254 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5.3E-21 120.7 11.2 76 245-328 8-84 (92)
255 1x5o_A RNA binding motif, sing 99.7 6.5E-17 2.2E-21 128.1 9.5 82 125-207 20-110 (114)
256 2xs2_A Deleted in azoospermia- 99.7 2.6E-17 8.8E-22 127.7 6.9 82 127-210 6-87 (102)
257 2cpj_A Non-POU domain-containi 99.7 8.9E-17 3E-21 123.8 9.9 78 244-327 12-90 (99)
258 2fc9_A NCL protein; structure 99.7 1.1E-16 3.8E-21 123.8 10.5 82 126-211 11-93 (101)
259 2a3j_A U1 small nuclear ribonu 99.7 9.7E-17 3.3E-21 128.5 10.3 81 126-209 25-110 (127)
260 1x4f_A Matrin 3; structural ge 99.7 2.1E-17 7.1E-22 128.4 6.1 79 126-210 21-103 (112)
261 2j8a_A Histone-lysine N-methyl 99.7 5.5E-17 1.9E-21 126.0 8.1 77 248-324 3-94 (136)
262 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-17 4.2E-22 129.2 4.4 82 127-210 14-96 (101)
263 2xs2_A Deleted in azoospermia- 99.7 3.9E-17 1.3E-21 126.6 7.1 81 246-328 8-88 (102)
264 2kvi_A Nuclear polyadenylated 99.7 5.8E-17 2E-21 124.0 7.9 77 245-329 8-86 (96)
265 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-16 4.5E-21 122.3 9.5 78 245-327 17-95 (97)
266 2dnq_A RNA-binding protein 4B; 99.7 2.1E-16 7.3E-21 119.4 10.5 78 127-212 5-83 (90)
267 1x4c_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 122.6 11.9 77 128-211 13-95 (108)
268 2cpd_A Apobec-1 stimulating pr 99.7 2.7E-16 9.4E-21 121.1 11.2 76 244-327 12-90 (99)
269 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-16 7.1E-21 124.0 10.6 81 126-212 21-102 (109)
270 1why_A Hypothetical protein ri 99.7 2E-16 6.8E-21 121.3 10.1 79 126-210 13-94 (97)
271 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-16 1E-20 117.3 10.5 76 125-206 7-84 (85)
272 2dnp_A RNA-binding protein 14; 99.7 2.3E-16 8E-21 119.1 10.1 75 245-327 7-82 (90)
273 2cpx_A Hypothetical protein FL 99.7 4.8E-17 1.6E-21 129.1 6.5 85 127-211 22-107 (115)
274 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4.1E-21 124.8 8.5 78 243-328 27-105 (108)
275 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.6E-21 124.4 8.0 77 131-207 3-94 (136)
276 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.4E-21 125.4 8.7 75 247-327 10-85 (111)
277 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-16 4.2E-21 122.3 8.4 78 245-327 14-92 (96)
278 2fc8_A NCL protein; structure 99.7 2E-16 6.8E-21 122.6 9.4 84 125-211 10-94 (102)
279 2la4_A Nuclear and cytoplasmic 99.7 9.6E-17 3.3E-21 124.2 7.5 75 245-325 25-100 (101)
280 1wf1_A RNA-binding protein RAL 99.7 1.6E-16 5.4E-21 124.9 8.8 73 246-326 26-100 (110)
281 2lcw_A RNA-binding protein FUS 99.5 5E-18 1.7E-22 135.0 0.0 85 127-211 4-97 (116)
282 2xnq_A Nuclear polyadenylated 99.7 2.8E-16 9.7E-21 120.2 9.8 77 243-327 18-96 (97)
283 2la4_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 123.2 8.0 78 125-208 22-100 (101)
284 1nu4_A U1A RNA binding domain; 99.7 9.4E-17 3.2E-21 123.2 6.9 79 246-327 7-90 (97)
285 2f3j_A RNA and export factor b 99.7 2.2E-16 7.6E-21 134.7 9.7 83 243-326 84-167 (177)
286 1nu4_A U1A RNA binding domain; 99.7 1.5E-16 5E-21 122.2 7.6 80 127-209 5-89 (97)
287 2dnl_A Cytoplasmic polyadenyla 99.7 2E-16 6.9E-21 125.1 8.6 77 128-206 6-85 (114)
288 2cpj_A Non-POU domain-containi 99.7 2.7E-16 9.1E-21 121.1 8.9 79 126-210 11-90 (99)
289 2xnq_A Nuclear polyadenylated 99.7 5.5E-16 1.9E-20 118.6 10.6 77 125-209 17-95 (97)
290 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-16 7.6E-21 121.0 8.4 79 126-209 15-94 (97)
291 4f02_A Polyadenylate-binding p 99.7 2.8E-16 9.6E-21 139.1 10.3 81 246-326 14-95 (213)
292 2e5g_A U6 snRNA-specific termi 99.7 5.7E-16 1.9E-20 118.0 10.5 75 247-327 8-83 (94)
293 3egn_A RNA-binding protein 40; 99.7 9.2E-17 3.2E-21 132.7 6.6 84 244-327 42-131 (143)
294 1whx_A Hypothetical protein ri 99.7 2.2E-16 7.5E-21 124.0 8.4 77 129-211 9-86 (111)
295 2dgt_A RNA-binding protein 30; 99.7 8.5E-16 2.9E-20 116.5 11.3 78 126-211 6-84 (92)
296 2dnp_A RNA-binding protein 14; 99.7 6.9E-16 2.3E-20 116.5 10.7 78 126-211 5-83 (90)
297 1fjc_A Nucleolin RBD2, protein 99.7 2.4E-16 8.1E-21 120.7 8.2 80 126-210 12-92 (96)
298 2jvo_A Nucleolar protein 3; nu 99.7 3.4E-16 1.2E-20 122.3 9.1 79 124-210 25-104 (108)
299 2f3j_A RNA and export factor b 99.7 3.3E-16 1.1E-20 133.6 9.8 80 128-208 86-166 (177)
300 1x5p_A Negative elongation fac 99.6 1.1E-15 3.8E-20 117.1 11.7 76 245-328 13-89 (97)
301 3d2w_A TAR DNA-binding protein 99.6 3.9E-16 1.3E-20 117.3 8.9 77 245-327 9-85 (89)
302 3d2w_A TAR DNA-binding protein 99.6 3.5E-16 1.2E-20 117.6 8.6 77 127-209 8-84 (89)
303 3pgw_S U1-70K; protein-RNA com 99.6 7.3E-16 2.5E-20 150.2 13.1 83 128-210 100-183 (437)
304 2dgu_A Heterogeneous nuclear r 99.6 9E-16 3.1E-20 119.0 10.8 78 127-212 8-86 (103)
305 3lqv_A PRE-mRNA branch site pr 99.6 4.5E-16 1.5E-20 123.5 9.1 78 246-326 7-85 (115)
306 2cqh_A IGF-II mRNA-binding pro 99.6 4.6E-16 1.6E-20 118.3 8.7 75 246-327 7-84 (93)
307 2cq2_A Hypothetical protein LO 99.6 3.2E-16 1.1E-20 121.6 7.8 77 245-327 23-107 (114)
308 2voo_A Lupus LA protein; RNA-b 99.6 7.7E-16 2.6E-20 133.4 10.7 78 130-208 109-186 (193)
309 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.1E-20 131.1 12.8 80 246-326 108-187 (193)
310 2cq2_A Hypothetical protein LO 99.6 8.6E-16 2.9E-20 119.3 9.4 81 126-212 21-109 (114)
311 3beg_B Splicing factor, argini 99.6 4E-16 1.4E-20 123.5 7.7 73 246-325 15-93 (115)
312 1wf0_A TDP-43, TAR DNA-binding 99.6 4.7E-16 1.6E-20 116.9 7.7 75 247-327 5-79 (88)
313 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-15 7.3E-20 116.0 11.5 77 127-211 12-91 (99)
314 2e5g_A U6 snRNA-specific termi 99.6 1.6E-15 5.3E-20 115.5 10.6 77 128-210 6-83 (94)
315 2kvi_A Nuclear polyadenylated 99.6 4.6E-16 1.6E-20 119.0 7.6 78 126-211 6-85 (96)
316 2cqh_A IGF-II mRNA-binding pro 99.6 7.1E-16 2.4E-20 117.2 8.5 78 127-211 5-85 (93)
317 2dnl_A Cytoplasmic polyadenyla 99.6 8.2E-16 2.8E-20 121.6 9.1 77 246-324 7-86 (114)
318 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 133.0 11.1 84 244-327 10-93 (196)
319 1wf1_A RNA-binding protein RAL 99.6 1.4E-15 4.6E-20 119.6 9.9 76 126-209 23-100 (110)
320 1wf0_A TDP-43, TAR DNA-binding 99.6 6.1E-16 2.1E-20 116.3 7.5 78 128-211 3-80 (88)
321 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-15 4.8E-20 125.5 10.2 77 247-327 46-125 (164)
322 2i2y_A Fusion protein consists 99.6 8.9E-16 3E-20 127.9 9.1 80 125-209 68-148 (150)
323 1wg1_A KIAA1579 protein, homol 99.6 1E-15 3.5E-20 115.0 8.2 74 129-209 4-78 (88)
324 1fxl_A Paraneoplastic encephal 99.6 1.5E-15 5.2E-20 128.9 10.3 80 247-326 2-82 (167)
325 1wg1_A KIAA1579 protein, homol 99.6 7.9E-16 2.7E-20 115.6 7.4 73 247-326 5-78 (88)
326 2e44_A Insulin-like growth fac 99.6 8.8E-16 3E-20 117.5 7.7 77 246-326 14-92 (96)
327 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.8E-20 129.4 9.7 80 247-326 3-83 (168)
328 3egn_A RNA-binding protein 40; 99.6 2.6E-16 8.9E-21 130.0 4.9 83 127-209 42-130 (143)
329 2diu_A KIAA0430 protein; struc 99.6 2.8E-15 9.6E-20 110.0 9.6 71 249-329 11-87 (96)
330 2pe8_A Splicing factor 45; RRM 99.6 2.5E-15 8.6E-20 116.1 10.0 80 246-325 7-93 (105)
331 3zzy_A Polypyrimidine tract-bi 99.6 2.2E-15 7.4E-20 119.8 9.7 75 248-327 29-107 (130)
332 1x5p_A Negative elongation fac 99.6 6.8E-15 2.3E-19 112.7 11.6 77 127-211 12-89 (97)
333 3pgw_A U1-A; protein-RNA compl 99.6 2E-14 6.7E-19 133.2 16.4 80 245-327 7-91 (282)
334 2e44_A Insulin-like growth fac 99.6 2.4E-15 8.4E-20 115.0 8.5 78 128-209 13-92 (96)
335 2cjk_A Nuclear polyadenylated 99.6 1.8E-15 6.2E-20 128.5 8.3 80 130-209 87-166 (167)
336 3md3_A Nuclear and cytoplasmic 99.6 4.2E-15 1.4E-19 126.1 10.6 82 126-207 83-165 (166)
337 2hzc_A Splicing factor U2AF 65 99.6 2.9E-15 9.9E-20 112.3 8.4 70 246-322 5-86 (87)
338 2qfj_A FBP-interacting repress 99.6 4.3E-15 1.5E-19 131.9 11.0 85 128-212 123-208 (216)
339 2hzc_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 111.9 8.8 71 128-205 4-86 (87)
340 2g4b_A Splicing factor U2AF 65 99.6 3.1E-15 1E-19 127.8 9.2 80 128-207 92-172 (172)
341 2e5i_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 115.9 10.9 75 247-327 25-103 (124)
342 2diu_A KIAA0430 protein; struc 99.6 6.8E-15 2.3E-19 108.0 9.3 73 130-212 8-87 (96)
343 3beg_B Splicing factor, argini 99.6 2.1E-15 7.1E-20 119.3 7.1 72 129-207 15-92 (115)
344 1sjr_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 121.4 10.3 77 130-210 46-125 (164)
345 2pe8_A Splicing factor 45; RRM 99.6 1.3E-14 4.3E-19 112.1 10.2 80 128-207 6-92 (105)
346 2yh0_A Splicing factor U2AF 65 99.6 9.8E-15 3.3E-19 127.7 10.5 83 128-210 112-195 (198)
347 2bz2_A Negative elongation fac 99.6 7.2E-15 2.5E-19 117.0 8.6 76 245-328 37-113 (121)
348 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-14 4.8E-19 115.1 10.2 76 131-211 29-108 (130)
349 3u1l_A PRE-mRNA-splicing facto 99.6 4.5E-15 1.6E-19 131.1 7.9 81 245-331 132-234 (240)
350 3tyt_A Heterogeneous nuclear r 99.6 8.1E-15 2.8E-19 128.4 8.9 75 247-326 4-80 (205)
351 3nmr_A Cugbp ELAV-like family 99.5 2E-14 7E-19 122.9 10.1 80 126-206 91-174 (175)
352 2bz2_A Negative elongation fac 99.5 2E-14 7E-19 114.4 8.7 78 126-211 35-113 (121)
353 2dit_A HIV TAT specific factor 99.5 9.9E-14 3.4E-18 109.1 12.0 80 244-327 12-103 (112)
354 2e5i_A Heterogeneous nuclear r 99.5 5.7E-14 2E-18 111.2 10.0 73 132-210 27-103 (124)
355 3u1l_A PRE-mRNA-splicing facto 99.5 2.1E-14 7.3E-19 126.8 7.9 80 126-211 130-231 (240)
356 3v4m_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 109.6 7.9 79 246-324 4-95 (105)
357 1fje_B Nucleolin RBD12, protei 99.5 7.9E-14 2.7E-18 119.3 8.8 78 127-209 96-174 (175)
358 3ue2_A Poly(U)-binding-splicin 99.5 8.4E-14 2.9E-18 109.6 7.7 79 246-324 19-107 (118)
359 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 123.7 8.4 78 244-326 31-110 (229)
360 2dit_A HIV TAT specific factor 99.5 4.1E-13 1.4E-17 105.5 10.4 82 125-210 10-103 (112)
361 1jmt_A Splicing factor U2AF 35 99.4 4.1E-14 1.4E-18 109.2 3.9 71 252-323 20-103 (104)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.4E-17 99.5 11.9 75 247-327 10-91 (100)
363 3v4m_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 104.0 8.3 79 129-207 4-95 (105)
364 1qm9_A Polypyrimidine tract-bi 99.4 1.5E-13 5.2E-18 120.1 6.9 76 247-327 3-80 (198)
365 3sde_A Paraspeckle component 1 99.4 4.3E-13 1.5E-17 122.5 9.4 75 245-325 20-95 (261)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.1E-12 1.1E-16 97.3 12.1 77 129-211 9-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.4E-18 106.4 4.4 71 135-206 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 6.1E-13 2.1E-17 104.7 7.9 79 129-207 19-107 (118)
369 3s6e_A RNA-binding protein 39; 99.3 3.5E-12 1.2E-16 99.6 8.7 76 245-324 5-91 (114)
370 3tht_A Alkylated DNA repair pr 99.3 1.3E-11 4.4E-16 115.1 9.8 77 124-206 12-96 (345)
371 3tht_A Alkylated DNA repair pr 99.3 9.8E-12 3.4E-16 115.9 8.5 75 244-324 15-97 (345)
372 3s6e_A RNA-binding protein 39; 99.2 9.9E-11 3.4E-15 91.3 9.1 75 129-207 6-91 (114)
373 1owx_A Lupus LA protein, SS-B, 99.1 1.4E-10 4.7E-15 90.4 8.9 76 243-324 14-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 2E-10 6.9E-15 83.5 8.4 72 246-326 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 6.8E-15 89.5 8.2 75 127-207 15-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.4E-09 4.9E-14 79.0 8.3 74 128-209 5-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 7.2E-10 2.5E-14 80.9 5.7 72 244-324 12-93 (95)
378 3dxb_A Thioredoxin N-terminall 98.8 1.1E-08 3.6E-13 90.8 9.6 77 248-324 125-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 4.7E-09 1.6E-13 76.6 5.6 75 125-207 10-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.6 5.8E-08 2E-12 86.0 6.9 78 130-207 124-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 4.3E-07 1.5E-11 67.5 7.9 71 247-323 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.5 1.3E-06 4.3E-11 64.6 9.7 71 129-207 7-82 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.1 1.7E-05 5.8E-10 59.0 8.5 72 129-206 20-97 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 6.5E-05 2.2E-09 55.5 10.3 74 246-327 7-85 (104)
385 1wey_A Calcipressin 1; structu 97.7 0.00011 3.7E-09 54.6 6.9 72 247-324 5-82 (104)
386 1whv_A Poly(A)-specific ribonu 97.5 0.00017 5.6E-09 52.6 6.0 53 132-192 17-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.3 0.0015 5E-08 50.1 9.1 73 245-324 22-95 (119)
388 1whv_A Poly(A)-specific ribonu 97.2 0.00082 2.8E-08 49.0 6.6 53 248-309 17-69 (100)
389 1uw4_A UPF3X; nonsense mediate 97.2 0.00095 3.2E-08 48.8 7.0 63 248-310 2-66 (91)
390 3ctr_A Poly(A)-specific ribonu 97.2 0.00044 1.5E-08 50.6 4.5 53 132-193 8-60 (101)
391 1uw4_A UPF3X; nonsense mediate 97.1 0.0016 5.5E-08 47.5 7.1 65 131-195 2-68 (91)
392 1wwh_A Nucleoporin 35, nucleop 97.0 0.0055 1.9E-07 46.9 9.3 72 129-207 23-95 (119)
393 3ctr_A Poly(A)-specific ribonu 96.8 0.00092 3.2E-08 48.9 3.7 52 249-309 8-59 (101)
394 1wey_A Calcipressin 1; structu 96.7 0.0098 3.4E-07 44.2 8.8 72 130-207 5-82 (104)
395 3p3d_A Nucleoporin 53; structu 96.6 0.0084 2.9E-07 46.5 7.8 76 248-324 8-97 (132)
396 2l08_A Regulator of nonsense t 96.5 0.005 1.7E-07 45.2 5.9 64 247-310 9-74 (97)
397 3p3d_A Nucleoporin 53; structu 96.2 0.0088 3E-07 46.4 5.9 76 131-207 8-97 (132)
398 2l08_A Regulator of nonsense t 96.1 0.0067 2.3E-07 44.5 4.7 66 130-195 9-76 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.9 0.0035 1.2E-07 60.5 3.0 56 131-192 54-109 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.7 0.0067 2.3E-07 58.5 3.9 57 247-309 53-109 (464)
401 3d45_A Poly(A)-specific ribonu 86.8 1.2 4.1E-05 43.8 7.0 55 247-310 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 86.8 1.2 4E-05 43.9 6.9 54 131-193 441-494 (507)
403 3tj1_A RNA polymerase I-specif 55.9 4.1 0.00014 40.8 1.7 9 146-154 385-393 (649)
404 4eyt_A Telomerase associated p 52.4 58 0.002 22.9 7.6 55 247-309 12-66 (129)
405 4eyt_A Telomerase associated p 48.8 67 0.0023 22.6 7.8 56 129-192 11-66 (129)
406 3fry_A Probable copper-exporti 40.4 76 0.0026 20.8 6.3 56 248-310 7-62 (73)
407 3tj1_A RNA polymerase I-specif 39.6 9.1 0.00031 38.4 1.2 8 147-154 383-390 (649)
408 4e8u_A Putative uncharacterize 38.4 58 0.002 26.4 5.5 50 132-184 14-74 (172)
409 1igq_A Transcriptional repress 33.4 43 0.0015 21.9 3.2 23 158-181 20-42 (62)
410 4e8u_A Putative uncharacterize 29.9 79 0.0027 25.6 5.0 59 246-307 11-81 (172)
411 3l9o_A ATP-dependent RNA helic 28.4 12 0.00042 40.6 0.0 20 173-192 228-247 (1108)
412 3ts2_A Protein LIN-28 homolog 27.9 8.3 0.00028 30.7 -1.1 28 262-297 2-29 (148)
413 3l9o_A ATP-dependent RNA helic 27.4 13 0.00046 40.2 0.1 11 297-307 449-459 (1108)
414 4aco_A Centromere DNA-binding 24.4 16 0.00055 37.3 0.0 8 84-91 715-722 (956)
415 3lpe_A Putative transcription 23.1 2E+02 0.0069 20.3 8.2 33 157-194 40-72 (92)
416 3h7h_B Transcription elongatio 23.1 1.1E+02 0.0037 22.5 4.4 32 274-310 41-72 (106)
417 3dxs_X Copper-transporting ATP 22.1 1.7E+02 0.0057 18.9 6.2 57 248-310 4-64 (74)
418 2i9x_A Putative septation prot 22.0 84 0.0029 22.2 3.4 26 273-298 5-30 (87)
419 1xn9_A 30S ribosomal protein S 21.4 2E+02 0.0068 20.9 5.4 49 140-189 28-81 (101)
420 2xzm_P RPS24E; ribosome, trans 21.1 1.5E+02 0.0052 23.3 4.9 47 257-304 31-82 (149)
421 2i9x_A Putative septation prot 20.9 1E+02 0.0036 21.7 3.7 26 156-181 5-30 (87)
422 2ia9_A Putative septation prot 20.1 93 0.0032 22.6 3.4 26 273-298 5-30 (100)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-36 Score=267.02 Aligned_cols=179 Identities=26% Similarity=0.495 Sum_probs=153.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
+....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 44567899999999999999999999999999999999999899999999999999999999999977889999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~ 285 (453)
+........ .......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+
T Consensus 89 ~~~~~~~~~--------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 89 AVSREDSQR--------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp CCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred ccCcccccc--------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC
Confidence 864432211 112234479999999999999999999999999999999999999
Q ss_pred CCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccCCCCCC
Q 012923 286 GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDGPKPG 330 (453)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~~~~~~ 330 (453)
+.++|||||+|.+.++|.+||..++..|+|+.|.|.++.++....
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC------
T ss_pred CCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhc
Confidence 999999999999999999999986689999999999998765443
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.5e-37 Score=271.48 Aligned_cols=166 Identities=20% Similarity=0.320 Sum_probs=148.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~ 207 (453)
..+||||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.++. .+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 458999999999999999999999999999999999999999999999999999999999998884 5899999998875
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
..... .....++|||+|||+.+|+++|+++|+.||.|..|+|+++. +.
T Consensus 94 ~~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~ 141 (213)
T 4f02_A 94 RDPSL------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 141 (213)
T ss_dssp CCTHH------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TE
T ss_pred ccccc------------------------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CC
Confidence 32211 11123589999999999999999999999999999999984 55
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
++|||||+|.+.++|.+||..|| ..|+|++|.|.++.++
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 79999999999999999999999 8999999999999754
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.1e-35 Score=254.61 Aligned_cols=164 Identities=29% Similarity=0.580 Sum_probs=149.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
.+++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|+.. ...+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999996 4679999999888642
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
.. .....++|||+|||+.+|+++|+++|++||.|..|+|++++.+|.+
T Consensus 81 ~~--------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 81 RD--------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp HH--------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred hh--------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 11 1112458999999999999999999999999999999999889999
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
+|||||+|.+.++|.+|+. ++ ..|+|++|.|.|+.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999 67 8999999999999654
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=247.90 Aligned_cols=163 Identities=22% Similarity=0.364 Sum_probs=148.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
|+|||+|||+++|+++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999998 68899999999999999999998777 5599999999998644
Q ss_pred CCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCc
Q 012923 210 PATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPK 289 (453)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~k 289 (453)
... .....++|||+|||+.+|+++|+++|++||.|..+.+++++.++.++
T Consensus 80 ~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 80 QQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp CCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 321 12234699999999999999999999999999999999999999999
Q ss_pred eEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 290 GFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 290 g~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
|||||+|.+.++|.+|+..|| ..|+|++|.|.|+.
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999998 89999999999984
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-34 Score=247.20 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=149.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
+++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5899999999999999999999999999999999999899999999999999999999999777 559999999999864
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
.... ...++|||+|||..+|+++|+++|++||.|..++|+++..++++
T Consensus 83 ~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 130 (168)
T 1b7f_A 83 GGES--------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 130 (168)
T ss_dssp CSST--------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE
T ss_pred Cccc--------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc
Confidence 3221 23469999999999999999999999999999999999889999
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a 323 (453)
+|||||+|.+.++|.+|+..|| ..|.| ++|+|.||
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999 88877 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4e-35 Score=262.22 Aligned_cols=179 Identities=22% Similarity=0.427 Sum_probs=152.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999999999899999999999999999999999777 569999999987653
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
....... ...........++|||+|||+.+|+++|+++|+.||.|..|+|++++.++++
T Consensus 108 ~~~~~~~---------------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 108 IGQAQPI---------------------IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp CGGGHHH---------------------HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred ccccchh---------------------hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 2211000 0000112234579999999999999999999999999999999999999999
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCC
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~ 329 (453)
+|||||+|.+.++|.+||..|| ..|+|+.|.|.++...+.+
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 9999999999999999999999 8999999999999876544
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.8e-34 Score=245.00 Aligned_cols=162 Identities=25% Similarity=0.425 Sum_probs=148.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
+++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999999899999999999999999999999777 569999999999863
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP 288 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~ 288 (453)
... ....++|||+|||..+|+++|+++|++||.|..++++++..+|.+
T Consensus 82 ~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 82 SSA--------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CCG--------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred Ccc--------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 321 123468999999999999999999999999999999999889999
Q ss_pred ceEEEEEECCHHHHHHHHHcCC-CccCCeE--EEEEEc
Q 012923 289 KGFCLFVYKTVDAAKKALEEPH-KNFEGHI--LNCQRA 323 (453)
Q Consensus 289 kg~afV~F~~~~~A~~Al~~~~-~~l~g~~--l~v~~a 323 (453)
+|||||+|.+.++|.+|+..|| ..|.|+. |.|.||
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999999 8899965 888775
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.6e-33 Score=240.86 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=142.6
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCC--CcceEEEEEEccHHHHHHHHHcCCCc-cC---CeEeE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSG--KSKGYGFILFKTRSGARKALKEPQKK-IG---NRMTA 202 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g--~~~G~afV~f~~~~~a~~A~~~~~~~-~~---gr~~~ 202 (453)
++++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.+++. +. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999776 89999999999999999999988753 43 56677
Q ss_pred EEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeecc
Q 012923 203 CQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID 282 (453)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d 282 (453)
+.++..... .....++|||+|||+.+|+++|+++|++||.|..|+|+++
T Consensus 82 ~~~~~~~~~-------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 130 (175)
T 3nmr_A 82 MKPADSEKN-------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG 130 (175)
T ss_dssp EEECGGGCC-------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred Ecccccccc-------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC
Confidence 766543221 1123468999999999999999999999999999999998
Q ss_pred CCCCCCceEEEEEECCHHHHHHHHHcCC-CccC---CeEEEEEEc
Q 012923 283 KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE---GHILNCQRA 323 (453)
Q Consensus 283 ~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~---g~~l~v~~a 323 (453)
. +|+++|||||+|.+.++|.+||..|| ..+. +++|.|.||
T Consensus 131 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 131 P-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp T-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred C-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 6 69999999999999999999999999 5555 499999997
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=3e-32 Score=234.41 Aligned_cols=157 Identities=17% Similarity=0.307 Sum_probs=139.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Ccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~----G-------~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~ 196 (453)
.+++|||+|||+++|+++|+++|++| | .|..+++. +++|||||+|.+.++|.+|+ .++ ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66777654 45799999999999999999 555 669
Q ss_pred CCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcce
Q 012923 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (453)
Q Consensus 197 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 276 (453)
.|+.|.|.++...... ...++|||+|||+.+|+++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~~--------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 123 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL--------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 123 (172)
T ss_dssp TTEECEEECCSSCCCC--------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEE
T ss_pred cCceeeecCCcccCCC--------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceE
Confidence 9999999986533211 12469999999999999999999999999999
Q ss_pred eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 277 v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
|+|++++.+|+++|||||+|.+.++|.+|+..|| ..|+|++|.|.||.
T Consensus 124 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 124 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999998899999999999999999999999998 89999999999973
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=8.4e-33 Score=238.58 Aligned_cols=165 Identities=20% Similarity=0.255 Sum_probs=142.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|..||.|.. .++++..+++++|||||+|.+.++|.+||+..+..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4556789999999999999999999999998877 345565688999999999999999999996333669999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~ 285 (453)
+...... .....++|||+|||+.+|+++|+++|++||.|..+ ..+
T Consensus 88 ~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~ 132 (175)
T 1fje_B 88 PKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQD 132 (175)
T ss_dssp CCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSS
T ss_pred CCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCC
Confidence 8643221 11234699999999999999999999999988765 458
Q ss_pred CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 286 GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
+.++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+.++
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8999999999999999999999999 8999999999999765
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1e-31 Score=236.68 Aligned_cols=181 Identities=15% Similarity=0.248 Sum_probs=145.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccC-----------CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Ccc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-----------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G-----------~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~ 196 (453)
.+++|||+|||+++|+++|+++|++|| .|..+++ ++++|||||+|.+.++|.+|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4555553 456899999999999999999 566 569
Q ss_pred CCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcce
Q 012923 197 GNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE 276 (453)
Q Consensus 197 ~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 276 (453)
.|+.|.|.++.............. ...............++|||+|||+.+|+++|+++|++||.|..
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 143 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPS------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 143 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSS------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCc------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE
Confidence 999999998765432211100000 00000011222345689999999999999999999999999999
Q ss_pred eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 277 GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 277 v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
|+|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|.|.++.++.+
T Consensus 144 ~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 144 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999998899999999999999999999999998 899999999999976543
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.5e-31 Score=235.24 Aligned_cols=188 Identities=10% Similarity=0.092 Sum_probs=141.0
Q ss_pred CcCeEEEcCCC-CCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 129 VHRKIFVHGLG-WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 129 ~~~~lfV~nLp-~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999876 37999999999999999999888 5599999999998
Q ss_pred ccCCCCCCCcCccccccc--cccccccccccc---ccccccccccccEEEEecCCCCccHHHHHHHHhccCCc--ceeee
Q 012923 207 SIGPATTPAVASTATHQH--QHQHQHQHQHQH---QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEI--EEGPL 279 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i--~~v~i 279 (453)
.................. ............ .........+.++|||+|||+.+|+++|+++|++||.| ..|+|
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 644321110000000000 000000000000 00001112346799999999999999999999999999 89999
Q ss_pred eccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe----EEEEEEc
Q 012923 280 GIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH----ILNCQRA 323 (453)
Q Consensus 280 ~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~----~l~v~~a 323 (453)
+.+. +.++|||||+|.+.++|.+||..|| ..|.|+ ++.|+++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8774 5667999999999999999999999 788776 6777776
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.4e-31 Score=244.68 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=145.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRM 200 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~----~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~ 200 (453)
+...+++|||+|||+++|+++|+ ++|++||.|..|+|++ +++++|||||+|.+.++|.+||+.+++ .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44567999999999999999977 8999999999999886 778999999999999999999988884 589999
Q ss_pred eEEEecccCCCCCCCcCccccccc----------cccc------------------------------------------
Q 012923 201 TACQLASIGPATTPAVASTATHQH----------QHQH------------------------------------------ 228 (453)
Q Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~------------------------------------------ 228 (453)
|.|.++.................. ....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998654421000000000000 0000
Q ss_pred ---------------------------ccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeec
Q 012923 229 ---------------------------QHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGI 281 (453)
Q Consensus 229 ---------------------------~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 281 (453)
...................++|||+|||..+|+++|+++|+.||.|..|+|+.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00000000000112334568999999999999999999999999999999987
Q ss_pred cCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC-CeEEEEEEcc
Q 012923 282 DKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAI 324 (453)
Q Consensus 282 d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~-g~~l~v~~a~ 324 (453)
++ +|||||+|.+.++|.+||..|| ..|. |+.|+|.|++
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 64 6899999999999999999999 8888 9999999985
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.6e-31 Score=246.64 Aligned_cols=172 Identities=22% Similarity=0.358 Sum_probs=154.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
.+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4456899999999999999999999999999999999999899999999999999999999998777 569999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCc-cHHHHHHHHhccCCcceeeeeccCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSEL-EPQKLLAFFSKYGEIEEGPLGIDKA 284 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~i~~d~~ 284 (453)
+...... ......++|||+|||+.+ |+++|+++|+.||.|..|+|+++.
T Consensus 172 a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~- 221 (284)
T 3smz_A 172 TDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ- 221 (284)
T ss_dssp CCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-
T ss_pred CCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-
Confidence 8643221 112345799999999995 999999999999999999999986
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPK 328 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~ 328 (453)
+|+++|||||+|.+.++|.+|+..|| ..|+|++|.|.|+.++..
T Consensus 222 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 89999999999999999999999999 899999999999976543
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.2e-31 Score=247.97 Aligned_cols=172 Identities=14% Similarity=0.212 Sum_probs=143.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..++|||+|||+++|+++|+++|..|| .|..|+|++++ .+.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999988 48899999999999999999999777 5699999999998
Q ss_pred ccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCC-ccHHHHHHHHhccCCcceeeeeccCC-
Q 012923 207 SIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKA- 284 (453)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~d~~- 284 (453)
......... .......++|||+|||+. +|+++|+++|+.||.|..|+|+++..
T Consensus 195 ~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~ 249 (292)
T 2ghp_A 195 NPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE 249 (292)
T ss_dssp CCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-
T ss_pred CCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc
Confidence 644322111 112334579999999999 99999999999999999999999876
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
|+.++|||||+|.+.++|.+|| .|| ..|+|++|.|.|+.+++
T Consensus 250 tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 250 HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp --CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 6999999999999999999999 888 88999999999997653
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.1e-30 Score=235.07 Aligned_cols=191 Identities=16% Similarity=0.212 Sum_probs=146.0
Q ss_pred CCCCCcCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
...+.+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3446679999999999 99999999999999999999999875 7899999999999999999777 569999999
Q ss_pred EEecccCCCCCCCcCcccccccc---cccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccC-Ccceee
Q 012923 203 CQLASIGPATTPAVASTATHQHQ---HQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGP 278 (453)
Q Consensus 203 v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~ 278 (453)
|.++................... ......................++|||+|||+.+|+++|+++|+.|| .|..|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 99987543221111000000000 00000000000001112233468999999999999999999999999 999999
Q ss_pred eeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC-CeEEEEEEccC
Q 012923 279 LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAID 325 (453)
Q Consensus 279 i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~-g~~l~v~~a~~ 325 (453)
|+.+ .+|||||+|.+.++|.+||..|| ..|. |++|+|.|+.+
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 9763 27999999999999999999999 8898 99999999865
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.3e-30 Score=229.43 Aligned_cols=186 Identities=16% Similarity=0.230 Sum_probs=143.5
Q ss_pred cCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 130 HRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 130 ~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
+++|||+|||+ ++|+++|+++|++||.|..|+|++++ +|||||+|.+.++|.+|+..++ ..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999999875 7899999999999999999777 56999999999987
Q ss_pred cCCCCCCCcCccccccccc---ccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccC
Q 012923 208 IGPATTPAVASTATHQHQH---QHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDK 283 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~ 283 (453)
................... .....................++|||+|||..+|+++|+++|+.|| .|..|+|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 5532221111000000000 0000000000001112233478999999999999999999999999 99999997642
Q ss_pred CCCCCceEEEEEECCHHHHHHHHHcCC-CccC-CeEEEEEEccC
Q 012923 284 ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE-GHILNCQRAID 325 (453)
Q Consensus 284 ~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~-g~~l~v~~a~~ 325 (453)
+|||||+|.+.++|.+|+..|| ..|+ |++|.|.|+.+
T Consensus 158 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 158 -----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp -----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred -----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 8999999999999999999999 8888 99999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3e-30 Score=236.85 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=140.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|.+ ++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35568999999999999999999999999999999864 46899999999999999999777 569999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT 285 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~ 285 (453)
+.. .++|||+|||+.+|+++|+++|+.||.|..|.|+++ .+
T Consensus 93 a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~ 133 (261)
T 3sde_A 93 ATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DR 133 (261)
T ss_dssp CCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TT
T ss_pred ccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CC
Confidence 752 248999999999999999999999999999999999 58
Q ss_pred CCCceEEEEEECCHHHHHHHHHcCC-Cc-cC---CeEEEEEEccCC
Q 012923 286 GKPKGFCLFVYKTVDAAKKALEEPH-KN-FE---GHILNCQRAIDG 326 (453)
Q Consensus 286 g~~kg~afV~F~~~~~A~~Al~~~~-~~-l~---g~~l~v~~a~~~ 326 (453)
|+++|||||+|.+.++|.+||..+| .. +. +++|.|.++...
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999999999999999995 43 33 999999998654
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.4e-30 Score=240.28 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=136.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|+.||.|..|+|++++. + ++|||||+|.+.++|.+||+..+..|.|+.|.|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 345578999999999999999999999999999999999873 3 58999999999999999997444679999999988
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKA 284 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~~ 284 (453)
+. .++|||+|||+.+|+++|+++|+.|| .|..|+|+++..
T Consensus 115 ~~---------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 115 LT---------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp CC---------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred CC---------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 62 25999999999999999999999999 999999998864
Q ss_pred CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 285 TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 285 ~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
+.++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++....
T Consensus 156 -~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 156 -NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp ----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred -CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 8899999999999999999999888 89999999999986543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.9e-30 Score=237.96 Aligned_cols=154 Identities=24% Similarity=0.358 Sum_probs=141.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
.+++|||+|||+++|+++|+++|+.|| |..|++ ++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 358999999999999999999999999 999987 4678999999999999999999877 55999999998853
Q ss_pred cCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC
Q 012923 208 IGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK 287 (453)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~ 287 (453)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|.
T Consensus 94 --------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 135 (284)
T 3smz_A 94 --------------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135 (284)
T ss_dssp --------------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred --------------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCc
Confidence 125899999999999999999999999999999999999999
Q ss_pred CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCC
Q 012923 288 PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGP 327 (453)
Q Consensus 288 ~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~ 327 (453)
++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++....
T Consensus 136 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 136 SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999888 89999999999996543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=4.1e-24 Score=180.55 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=111.5
Q ss_pred EEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc--cCCeEeEEEecccCCCCCCCcCccccccccccccccccccc
Q 012923 159 DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK--IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQH 236 (453)
Q Consensus 159 ~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~--~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (453)
.++|+++.. +++|||||+|.+.++|++|++.++.. +.+.. .+.......... ....
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~-~~~~~~~~~~~~-------------------~~~~ 59 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEW-TYDDATKTFTVT-------------------EGSH 59 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE-EEETTTTEEEEE-------------------CCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcc-cccCcccccccc-------------------cccc
Confidence 567788753 69999999999999999999877632 22222 221111000000 0000
Q ss_pred ccccccccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC
Q 012923 237 QQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 237 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
...........++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+||..|| ..|.|
T Consensus 60 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 60 HHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 00112223345799999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred eEEEEEEccCCC
Q 012923 316 HILNCQRAIDGP 327 (453)
Q Consensus 316 ~~l~v~~a~~~~ 327 (453)
++|.|.++....
T Consensus 140 ~~l~v~~a~~~~ 151 (158)
T 2kn4_A 140 RELRVQMARYGR 151 (158)
T ss_dssp SEEEEEEECCSS
T ss_pred eEEEEEECCCCC
Confidence 999999997653
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.6e-22 Score=160.54 Aligned_cols=108 Identities=24% Similarity=0.461 Sum_probs=72.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
+++|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 4589999999999999999999877 569999999999864
Q ss_pred CCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHH
Q 012923 209 GPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQK 263 (453)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 263 (453)
........ .......++|||+|||+.+|++.
T Consensus 83 ~~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------------------------
T ss_pred cccccccc------------------------ccccCCCCceEeCCCCCCccccc
Confidence 43221110 11122335799999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=3e-21 Score=161.24 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=108.4
Q ss_pred CCCcceEEEEEEccHHHHHHHHHcC-C-CccCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccc
Q 012923 168 SGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEY 245 (453)
Q Consensus 168 ~g~~~G~afV~f~~~~~a~~A~~~~-~-~~~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (453)
..+.+|+++|+|.+.++|++|++.+ + ..+.| .+.+.++.......... .............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~~~ 71 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----------------HHHHHHMHRDSCP 71 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----------------SSCCCCSCSSSST
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----------------ccccccccccCCC
Confidence 3467899999999999999999988 6 55888 88888765321100000 0000011123344
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+||..|| ..|+|++|+|.|+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5679999999999999999999999999999999876 48999999999999999999988 88999999999996
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=147.18 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=76.3
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+||..|| ..|+|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999998 89999999999985
Q ss_pred C
Q 012923 325 D 325 (453)
Q Consensus 325 ~ 325 (453)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=144.69 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=75.8
Q ss_pred cEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC--CccCCeEEEEEEcc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQRAI 324 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~l~g~~l~v~~a~ 324 (453)
++|||+|||+.+|+++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+||..++ ..|+|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999999999999999999999999999999999874 57999999999997
Q ss_pred CCCC
Q 012923 325 DGPK 328 (453)
Q Consensus 325 ~~~~ 328 (453)
++++
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6654
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=144.82 Aligned_cols=79 Identities=27% Similarity=0.440 Sum_probs=74.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
..++|||+|||+++|+++|+++|++||.|..|+|++|+.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45799999999999999999999999999999999999999999999999999999999999877 56999999999984
No 27
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=4.9e-21 Score=186.68 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=77.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|+.||.|+.|.|+.++.+++++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999999 89999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 181 ~~~ 183 (437)
T 3pgw_S 181 GRT 183 (437)
T ss_pred CCC
Confidence 554
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=142.35 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=75.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-C-ccCCeEeEEEec
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-K-KIGNRMTACQLA 206 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~-~~~gr~~~v~~~ 206 (453)
+++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.++ . .|.||.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 3 489999999998
Q ss_pred ccCCC
Q 012923 207 SIGPA 211 (453)
Q Consensus 207 ~~~~~ 211 (453)
..++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75543
No 29
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.4e-20 Score=153.47 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=80.6
Q ss_pred EEEEEEccHHHHHHHHHcCCCc-cCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEE
Q 012923 174 YGFILFKTRSGARKALKEPQKK-IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFV 252 (453)
Q Consensus 174 ~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 252 (453)
++|++|.+...+..|+..++.. ..++. .+.+. . ........++|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~--~------------------------------~~~~~~~~~~l~V 52 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYG--R------------------------------PPPDVEGMTSLKV 52 (135)
T ss_dssp ------------------------------CCSC--C------------------------------SCSSGGGCCCEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcC--C------------------------------CCCCCCCCCEEEE
Confidence 6788888888888888887733 22222 11000 0 0122334579999
Q ss_pred ecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCC
Q 012923 253 SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKP 329 (453)
Q Consensus 253 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~ 329 (453)
+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|++|.|.|+.....+
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999899999999999999999999999999 8899999999999765543
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=142.79 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=73.7
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCC--cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C----ccCCeEEE
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGE--IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEGHILN 319 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~----~l~g~~l~ 319 (453)
-.+|||+|||+.+|+++|+++|++||. |.+|+|++|+.+|++||||||+|.+.++|.+||+.|| . .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 359999999999999999999999995 7799999999999999999999999999999999988 3 48999999
Q ss_pred EEEccC
Q 012923 320 CQRAID 325 (453)
Q Consensus 320 v~~a~~ 325 (453)
|.||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999964
No 31
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=8e-21 Score=169.35 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=75.4
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccC--CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
.++|||+||++.+|+++|+++|+.|| .|+.|+|++++.++++||||||+|.+.++|.+||..|| ..|+|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 35999999999999999999999999 99999999999999999999999999999999999999 8999999999998
Q ss_pred cC
Q 012923 324 ID 325 (453)
Q Consensus 324 ~~ 325 (453)
..
T Consensus 148 ~~ 149 (229)
T 3q2s_C 148 NK 149 (229)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 32
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-19 Score=142.55 Aligned_cols=87 Identities=30% Similarity=0.479 Sum_probs=80.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~ 322 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccCCCCC
Q 012923 323 AIDGPKP 329 (453)
Q Consensus 323 a~~~~~~ 329 (453)
+.....+
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9765444
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=140.88 Aligned_cols=80 Identities=18% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCC--eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-----ccCCeE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGE--IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-----KIGNRM 200 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~--i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-----~~~gr~ 200 (453)
..-.||||+|||+++|+++|+++|++||. |.+|+|++|+.++++||||||+|.+.++|.+||+.+++ .|.||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34569999999999999999999999995 77999999999999999999999999999999998875 389999
Q ss_pred eEEEecc
Q 012923 201 TACQLAS 207 (453)
Q Consensus 201 ~~v~~~~ 207 (453)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999985
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=142.80 Aligned_cols=80 Identities=21% Similarity=0.374 Sum_probs=76.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++|+.|++++|||||+|.+.++|.+||..|| ..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34699999999999999999999999999999999999999999999999999999999999999 89999999999985
Q ss_pred C
Q 012923 325 D 325 (453)
Q Consensus 325 ~ 325 (453)
.
T Consensus 85 ~ 85 (110)
T 3s8s_A 85 K 85 (110)
T ss_dssp T
T ss_pred C
Confidence 4
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=142.19 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=75.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
+..++|||+|||+++|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.+| ..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999888 5599999999998
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 5
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=4.8e-19 Score=140.73 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=80.5
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456799999999999999999999999999999999998899999999999999999999999999 88999999999
Q ss_pred EccCCCCC
Q 012923 322 RAIDGPKP 329 (453)
Q Consensus 322 ~a~~~~~~ 329 (453)
|+..+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=145.48 Aligned_cols=86 Identities=20% Similarity=0.352 Sum_probs=80.0
Q ss_pred cccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344556899999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++....
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997654
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=137.57 Aligned_cols=84 Identities=29% Similarity=0.424 Sum_probs=78.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345799999999999999999999999999999999999899999999999999999999999999 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 76553
No 39
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=2.5e-19 Score=134.73 Aligned_cols=81 Identities=36% Similarity=0.710 Sum_probs=76.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++..|.|+.|.|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45567899999999999999999999999999999999999899999999999999999999999888889999999987
Q ss_pred c
Q 012923 206 A 206 (453)
Q Consensus 206 ~ 206 (453)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 40
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2.4e-19 Score=150.73 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=78.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=136.26 Aligned_cols=83 Identities=23% Similarity=0.397 Sum_probs=77.9
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCccee-eeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEG-PLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..++|||+|||+.+|+++|+++|+.||.|..| +|++++.++.++|||||+|.+.++|.+||..|| ..|.|++|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34699999999999999999999999999999 999998999999999999999999999999999 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76553
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=134.99 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=75.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34699999999999999999999999999999999998899999999999999999999999988 88999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
.+|
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=135.63 Aligned_cols=82 Identities=20% Similarity=0.397 Sum_probs=77.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|++|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34699999999999999999999999999999999999999999999999999999999999988 89999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
.+.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=136.21 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=76.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||. ++ ..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 355799999999999999999999999999999999999999999999999999999999999 77 8999999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
..+.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=138.96 Aligned_cols=81 Identities=27% Similarity=0.439 Sum_probs=76.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|+.||.|..|.|+++. +++++|||||+|.+.++|.+||..|| ..|+|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34699999999999999999999999999999999998 99999999999999999999999999 88999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=139.38 Aligned_cols=87 Identities=36% Similarity=0.664 Sum_probs=80.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
..+...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.+++.|.|+.|.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 44566799999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9975443
No 47
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=5.4e-19 Score=138.64 Aligned_cols=87 Identities=28% Similarity=0.584 Sum_probs=76.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
+.....++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|.|+.|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 44556789999999999999999999999999999999999989999999999999999999999999888999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9875543
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=137.61 Aligned_cols=85 Identities=25% Similarity=0.390 Sum_probs=79.1
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred ccCCCC
Q 012923 323 AIDGPK 328 (453)
Q Consensus 323 a~~~~~ 328 (453)
+..+..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976543
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=137.20 Aligned_cols=84 Identities=27% Similarity=0.465 Sum_probs=78.7
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 76654
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.2e-19 Score=131.76 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
.+|||+|||+.+|+++|+++|+.||.|..|.|++++.+++++|||||+|.+.++|.+|+..|| ..|+|++|+|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999999999999999999999999999999988 8899999999999765
Q ss_pred C
Q 012923 327 P 327 (453)
Q Consensus 327 ~ 327 (453)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.2e-19 Score=136.99 Aligned_cols=85 Identities=15% Similarity=0.296 Sum_probs=79.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred ccCCCC
Q 012923 323 AIDGPK 328 (453)
Q Consensus 323 a~~~~~ 328 (453)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 976543
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=137.50 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=78.1
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 345799999999999999999999999999999999999999999999999999999999999988 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
....
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=6.4e-19 Score=140.00 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=79.3
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 33455799999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
|+..+..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9976543
No 54
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=137.71 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=78.5
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3445799999999999999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 97654
No 55
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=136.95 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.+...++|||+|||+++|+++|+++|++||.|.+|+|++++. ++++|||||+|.+.++|.+||...+..|.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345568999999999999999999999999999999999986 9999999999999999999999544779999999998
Q ss_pred cc
Q 012923 206 AS 207 (453)
Q Consensus 206 ~~ 207 (453)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 75
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=7.9e-19 Score=131.98 Aligned_cols=79 Identities=23% Similarity=0.576 Sum_probs=74.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 3557999999999999999999999999999999999999999999999999999999999988778899999999886
No 57
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=4.8e-19 Score=150.16 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=79.9
Q ss_pred EEEccHHHHHHHHHcCCCc---cCCeEeEEEecccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEe
Q 012923 177 ILFKTRSGARKALKEPQKK---IGNRMTACQLASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVS 253 (453)
Q Consensus 177 V~f~~~~~a~~A~~~~~~~---~~gr~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 253 (453)
.+|.+.++|..|+..++.. -.|+.+.+.+....... .... ............+......++|||+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~-----~~~~-------~~~s~~~~~~~~~~~~~~~~~l~V~ 78 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH-----SYER-------VRNEDDDELEPGPQRSVEGWILFVT 78 (165)
T ss_dssp -------------------------------------------------------------------CCCCC-CEEEEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc-----Cccc-------cccCCCCCCCCCCCCCCCCCEEEEe
Confidence 7889999999999888743 23444444432111000 0000 0000000011122334456799999
Q ss_pred cCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCCCCCC
Q 012923 254 NVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDGPKPG 330 (453)
Q Consensus 254 nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~~~~~ 330 (453)
|||+.+|+++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+||..|| ..|.|++|.|.|+..++...
T Consensus 79 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 79 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999 88999999999998766543
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=133.73 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=78.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999998888 459999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976544
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4.9e-19 Score=143.16 Aligned_cols=87 Identities=26% Similarity=0.430 Sum_probs=80.5
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||..|| ..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EccCCCCC
Q 012923 322 RAIDGPKP 329 (453)
Q Consensus 322 ~a~~~~~~ 329 (453)
|+..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876544
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.4e-19 Score=136.87 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=71.6
Q ss_pred cEEEEecCCCCccHHHHHHHHhccC--CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.+|||+|||+.+|+++|+++|++|| .|..|+|++++.+|+++|||||+|.+.++|.+||..|| ..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 89999999999997
Q ss_pred CCCC
Q 012923 325 DGPK 328 (453)
Q Consensus 325 ~~~~ 328 (453)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 61
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=8e-19 Score=137.65 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=77.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 34457999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=133.29 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=78.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+..+..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999434679999999999
Q ss_pred cccCCCC
Q 012923 206 ASIGPAT 212 (453)
Q Consensus 206 ~~~~~~~ 212 (453)
+......
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9755443
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-19 Score=137.49 Aligned_cols=86 Identities=26% Similarity=0.406 Sum_probs=79.8
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
++..++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=132.14 Aligned_cols=81 Identities=31% Similarity=0.513 Sum_probs=74.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
..++|||+|||.++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999877 56999999999986
Q ss_pred cC
Q 012923 208 IG 209 (453)
Q Consensus 208 ~~ 209 (453)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 43
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=136.21 Aligned_cols=86 Identities=27% Similarity=0.368 Sum_probs=79.2
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeecc-CCCCCCceEEEEEECCHHHHHHHHHcC-C-CccCCeEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGID-KATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILN 319 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d-~~~g~~kg~afV~F~~~~~A~~Al~~~-~-~~l~g~~l~ 319 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+++ +.+++++|||||+|.+.++|.+||..| | ..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445679999999999999999999999999999999999 789999999999999999999999999 7 899999999
Q ss_pred EEEccCCCC
Q 012923 320 CQRAIDGPK 328 (453)
Q Consensus 320 v~~a~~~~~ 328 (453)
|.|+..+..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999976543
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=134.56 Aligned_cols=82 Identities=26% Similarity=0.270 Sum_probs=76.0
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.|| |..|+|++++.+++++|||||+|.+.++|.+|| .|| ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34467999999999999999999999997 999999999999999999999999999999999 788 899999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97654
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=134.58 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=77.4
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..|| ..|+|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999998 99999999999999999999999988 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+.+++
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97654
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.2e-18 Score=136.20 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=77.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc---CCeEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGHILN 319 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l---~g~~l~ 319 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3455799999999999999999999999999999999999999999999999999999999999998 666 889999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997654
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=135.07 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=75.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC-CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~-g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .|| ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 999999999888 999999999999999999999 888 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97654
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=135.05 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=76.7
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCC---CCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKA---TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~---~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++. +++++|||||+|.+.++|.+||..|| ..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 346999999999999999999999999999999999876 66899999999999999999999999 89999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
++..+..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976543
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1e-18 Score=134.00 Aligned_cols=81 Identities=15% Similarity=0.404 Sum_probs=77.0
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+| ..|+|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4699999999999999999999999999999999999999999999999999999999999998 889999999999976
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=3.2e-18 Score=135.99 Aligned_cols=88 Identities=31% Similarity=0.520 Sum_probs=80.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998899999999999999999999999887 5599999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999766544
No 73
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.4e-18 Score=137.96 Aligned_cols=88 Identities=23% Similarity=0.380 Sum_probs=79.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
...+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999999899999999999999999999998877 5699999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 998755443
No 74
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=7.8e-19 Score=131.44 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=75.3
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..|| ..|+|++|+|.|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45799999999999999999999999999999999998999999999999999999999999988 89999999999974
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.6e-19 Score=138.15 Aligned_cols=80 Identities=30% Similarity=0.374 Sum_probs=76.2
Q ss_pred ccEEEEecCCC------CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC-eEE
Q 012923 247 QRKIFVSNVGS------ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-HIL 318 (453)
Q Consensus 247 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g-~~l 318 (453)
.++|||+|||+ .+++++|+++|++||.|..|+|++++.||+++|||||+|.+.++|.+||..|| ..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46999999999 99999999999999999999999999999999999999999999999999999 89999 999
Q ss_pred EEEEccCC
Q 012923 319 NCQRAIDG 326 (453)
Q Consensus 319 ~v~~a~~~ 326 (453)
.|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998653
No 76
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=135.77 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=76.6
Q ss_pred cccEEEEecCCCCccHHHHHHHHhc-cCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Cc-cCCeEEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSK-YGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KN-FEGHILNCQR 322 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~-l~g~~l~v~~ 322 (453)
..++|||+|||+.+|+++|+++|+. ||.|..|+|++++ +++++|||||+|.+.++|.+||..|+ .. |+|++|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 4579999999999999999999999 9999999999998 99999999999999999999999999 77 9999999999
Q ss_pred ccCCCC
Q 012923 323 AIDGPK 328 (453)
Q Consensus 323 a~~~~~ 328 (453)
+..+..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 965543
No 77
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=134.98 Aligned_cols=86 Identities=26% Similarity=0.360 Sum_probs=79.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999888 56999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9875544
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.7e-18 Score=128.98 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999998899999999999999999999999877 5699999999998644
No 79
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=137.22 Aligned_cols=86 Identities=29% Similarity=0.427 Sum_probs=79.0
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcc--------eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--------EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l 313 (453)
.....++|||+|||+.+|+++|+++|+.||.|. .|+|++++.+++++|||||+|.+.++|.+||..|| ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 334567999999999999999999999999999 69999998999999999999999999999999988 889
Q ss_pred CCeEEEEEEccCCCC
Q 012923 314 EGHILNCQRAIDGPK 328 (453)
Q Consensus 314 ~g~~l~v~~a~~~~~ 328 (453)
.|+.|+|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999976543
No 80
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=132.25 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=77.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC-KAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v-~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
...++|||+|||+++|+++|+++|++||.|..| +|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999998899999999999999999999999888 559999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875544
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=9.3e-19 Score=138.78 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=73.1
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|.+||..|+ ..|+|++|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3589999999999999999999999999999999985 4589999999999999999999998 899999999999875
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 82
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=133.55 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=77.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999998 889999999999
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 83
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=134.04 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999887 5699999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99876544
No 84
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.5e-18 Score=129.87 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=74.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999998877 569999999998
Q ss_pred c
Q 012923 206 A 206 (453)
Q Consensus 206 ~ 206 (453)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=134.84 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=77.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+++ ++.++|||||+|.+.++|.+||..|| ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3345679999999999999999999999999999999998 89999999999999999999999988 88999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9976553
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.6e-18 Score=136.59 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=79.7
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|.|++++.+++++|||||+|.+.++|.+||..|| ..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999988 88999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
|+..+..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9976653
No 87
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.4e-18 Score=134.28 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=76.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC---eEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG---HILNC 320 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g---~~l~v 320 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..|| ..|.| ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346799999999999999999999999999999999987 89999999999999999999999998 77887 99999
Q ss_pred EEccCCCC
Q 012923 321 QRAIDGPK 328 (453)
Q Consensus 321 ~~a~~~~~ 328 (453)
.++.....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99976553
No 88
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=132.58 Aligned_cols=81 Identities=27% Similarity=0.439 Sum_probs=76.4
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3455799999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred cc
Q 012923 323 AI 324 (453)
Q Consensus 323 a~ 324 (453)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 89
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=135.68 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=79.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC------C-ccC
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ------K-KIG 197 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~------~-~~~ 197 (453)
......++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||..++ . .|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445567899999999999999999999999999999999999899999999999999999999999886 4 599
Q ss_pred CeEeEEEecccCCCC
Q 012923 198 NRMTACQLASIGPAT 212 (453)
Q Consensus 198 gr~~~v~~~~~~~~~ 212 (453)
|+.|.|.++......
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999998765443
No 90
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=132.21 Aligned_cols=84 Identities=25% Similarity=0.429 Sum_probs=77.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..+++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999999899999999999999999999999777 5699999999999
Q ss_pred ccCCC
Q 012923 207 SIGPA 211 (453)
Q Consensus 207 ~~~~~ 211 (453)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 75544
No 91
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=135.06 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=73.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+||. ++ ..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 447999999999999999999999999999999999987 9999999999999999999999 66 89999999999976
Q ss_pred C
Q 012923 325 D 325 (453)
Q Consensus 325 ~ 325 (453)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=7.7e-19 Score=156.50 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=74.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G--~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
..++|||+|||+++|+++|+++|++|| .|..|+|++|+.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 99999999999999999999999999999999999888 569999999999
Q ss_pred cc
Q 012923 206 AS 207 (453)
Q Consensus 206 ~~ 207 (453)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=134.59 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=75.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..|| ..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345799999999999999999999999999999999987 69999999999999999999999988 8899999999998
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 654
No 94
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=135.63 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=78.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-------CccCCe
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-------KNFEGH 316 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-------~~l~g~ 316 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..+| ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456799999999999999999999999999999999999999999999999999999999999885 578999
Q ss_pred EEEEEEccCCCC
Q 012923 317 ILNCQRAIDGPK 328 (453)
Q Consensus 317 ~l~v~~a~~~~~ 328 (453)
.|.|.++..+..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999976543
No 95
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.7e-19 Score=134.60 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G--~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
.+|||+|||+++|+++|+++|++|| .|.+|+|++++.+|+++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999888 56999999999987
Q ss_pred cCC
Q 012923 208 IGP 210 (453)
Q Consensus 208 ~~~ 210 (453)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 96
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=132.76 Aligned_cols=85 Identities=24% Similarity=0.468 Sum_probs=77.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 99999999999999999999998877 5599999999
Q ss_pred EecccCC
Q 012923 204 QLASIGP 210 (453)
Q Consensus 204 ~~~~~~~ 210 (453)
.++....
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9986543
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=133.52 Aligned_cols=82 Identities=27% Similarity=0.382 Sum_probs=76.8
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcce--------eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l 313 (453)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||..|| ..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445679999999999999999999999999999 9999999999999999999999999999999988 899
Q ss_pred CCeEEEEEEcc
Q 012923 314 EGHILNCQRAI 324 (453)
Q Consensus 314 ~g~~l~v~~a~ 324 (453)
.|+.|+|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999973
No 98
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=4.9e-19 Score=136.62 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCcCeEEEcCCCC------CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCC-e
Q 012923 128 PVHRKIFVHGLGW------DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGN-R 199 (453)
Q Consensus 128 ~~~~~lfV~nLp~------~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~g-r 199 (453)
..+++|||+|||+ ++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999899999999999999999999999887 55898 9
Q ss_pred EeEEEecc
Q 012923 200 MTACQLAS 207 (453)
Q Consensus 200 ~~~v~~~~ 207 (453)
.|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999985
No 99
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=132.20 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=77.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. .+.|+|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 34457999999999999999999999999999999999999999999999999999999999995 46799999999999
Q ss_pred cCCCCC
Q 012923 324 IDGPKP 329 (453)
Q Consensus 324 ~~~~~~ 329 (453)
..+...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 776543
No 100
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.3e-19 Score=145.92 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=72.1
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|.+|| .+| ..|+||.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 446999999999999999999999999 77999999975 999999999999999999999 667 89999999999986
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 101
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=133.75 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=79.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999877 55999999999
Q ss_pred ecccCCCC
Q 012923 205 LASIGPAT 212 (453)
Q Consensus 205 ~~~~~~~~ 212 (453)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 98755443
No 102
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=131.66 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=77.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999877 5599999999
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9975
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=136.44 Aligned_cols=83 Identities=17% Similarity=0.437 Sum_probs=77.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. + ..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3457999999999999999999999999999999999999999999999999999999999999 6 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 76543
No 104
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=134.27 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=78.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999777 56999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9975443
No 105
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=133.60 Aligned_cols=86 Identities=28% Similarity=0.518 Sum_probs=78.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999998877 56999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9876544
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.4e-18 Score=131.77 Aligned_cols=87 Identities=25% Similarity=0.472 Sum_probs=78.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
......++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||.. ...|.|+.|.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~ 88 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999995 457999999999
Q ss_pred ecccCCCC
Q 012923 205 LASIGPAT 212 (453)
Q Consensus 205 ~~~~~~~~ 212 (453)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99765443
No 107
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=132.37 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=76.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCC---CCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---SGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~---~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
...++|||+|||+++|+++|+++|++||.|..|+|++++. +++++|||||+|.+.++|.+||..|+ ..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999999886 56899999999999999999999887 5699999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99875544
No 108
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.6e-18 Score=131.68 Aligned_cols=81 Identities=25% Similarity=0.518 Sum_probs=75.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
+++|||+|||.++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999899999999999999999999999877 559999999999875
Q ss_pred CC
Q 012923 209 GP 210 (453)
Q Consensus 209 ~~ 210 (453)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=131.08 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=75.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
..+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999889999999999999999999999888 45999999999
Q ss_pred ec
Q 012923 205 LA 206 (453)
Q Consensus 205 ~~ 206 (453)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=135.24 Aligned_cols=84 Identities=23% Similarity=0.427 Sum_probs=78.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+| ..|+|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred EccCC
Q 012923 322 RAIDG 326 (453)
Q Consensus 322 ~a~~~ 326 (453)
++..+
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99654
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=133.02 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~ 202 (453)
.....++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|.||.|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4556789999999999999999999999999999999875 6899999999999999999664 459999999
Q ss_pred EEecccCCCC
Q 012923 203 CQLASIGPAT 212 (453)
Q Consensus 203 v~~~~~~~~~ 212 (453)
|.++..+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9998765444
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-19 Score=128.80 Aligned_cols=76 Identities=30% Similarity=0.705 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999998999999999999999999999999997799999999886
No 113
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=9.9e-19 Score=142.15 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=76.9
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcce--eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C----ccCC
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K----NFEG 315 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~----~l~g 315 (453)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+||..|| . .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999976 99999999999999999999999 9999999999 7 8999
Q ss_pred eEEEEEEccCC
Q 012923 316 HILNCQRAIDG 326 (453)
Q Consensus 316 ~~l~v~~a~~~ 326 (453)
+.|.|.++...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999654
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=133.67 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=71.1
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQ 321 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v~ 321 (453)
...++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+||..++ ..|.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34579999999999999999999999999999999976 8999999999999999999764 57999999999
Q ss_pred EccCCCCC
Q 012923 322 RAIDGPKP 329 (453)
Q Consensus 322 ~a~~~~~~ 329 (453)
|+..+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99766543
No 115
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=132.88 Aligned_cols=81 Identities=17% Similarity=0.348 Sum_probs=76.6
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcc-eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeE----EE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIE-EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI----LN 319 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~----l~ 319 (453)
..++|||+|||+.+|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 99999999999999999999999999999999999 8899999 99
Q ss_pred EEEccCC
Q 012923 320 CQRAIDG 326 (453)
Q Consensus 320 v~~a~~~ 326 (453)
|.|+...
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9998654
No 116
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=132.64 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+||..|| ..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345799999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=134.89 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=78.8
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
.......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4456677999999999999999999999999999999999999899999999999999999999999877 569999999
Q ss_pred EEecccC
Q 012923 203 CQLASIG 209 (453)
Q Consensus 203 v~~~~~~ 209 (453)
|.++..+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998643
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=135.75 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=78.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||.. + ..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 344567999999999999999999999999999999999999999999999999999999999999 7 88999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9976543
No 119
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=133.31 Aligned_cols=87 Identities=20% Similarity=0.389 Sum_probs=79.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEccc-CCCCCcceEEEEEEccHHHHHHHHHcC-C-CccCCeEe
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCD-KVSGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMT 201 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d-~~~g~~~G~afV~f~~~~~a~~A~~~~-~-~~~~gr~~ 201 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+||..+ + ..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999999 789999999999999999999999998 5 66999999
Q ss_pred EEEecccCCC
Q 012923 202 ACQLASIGPA 211 (453)
Q Consensus 202 ~v~~~~~~~~ 211 (453)
.|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999976544
No 120
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=134.06 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=77.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456899999999999999999999999999999999999899999999999999999999999877 569999999999
Q ss_pred cccC
Q 012923 206 ASIG 209 (453)
Q Consensus 206 ~~~~ 209 (453)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 121
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=130.99 Aligned_cols=85 Identities=22% Similarity=0.370 Sum_probs=76.5
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++. .++|||||+|.+.++|.+||..|| ..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567999999999999999999999999999999998853 489999999999999999999988 88999999999
Q ss_pred EccCCCCC
Q 012923 322 RAIDGPKP 329 (453)
Q Consensus 322 ~a~~~~~~ 329 (453)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99776543
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=3.3e-18 Score=129.17 Aligned_cols=78 Identities=24% Similarity=0.418 Sum_probs=74.4
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|| .+| ..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999999999999999999999999999999 788 889999999999865
No 123
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=131.42 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=75.0
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||..|| ..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34567999999999999999999999999999999999854 368999999999999999999988 889999999999
Q ss_pred ccCCCC
Q 012923 323 AIDGPK 328 (453)
Q Consensus 323 a~~~~~ 328 (453)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 976543
No 124
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-19 Score=128.22 Aligned_cols=77 Identities=18% Similarity=0.403 Sum_probs=73.9
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~ 324 (453)
++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++..|+|++|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 37999999999999999999999999999999999999999999999999999999999999988999999999873
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=134.19 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=77.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999999887 569999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 875543
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.8e-18 Score=126.11 Aligned_cols=74 Identities=24% Similarity=0.587 Sum_probs=70.7
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
+|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+. ++ ..|+|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 66 8999999999875
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=134.14 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=70.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 78999999999999999999877 6699999999999765
Q ss_pred CC
Q 012923 210 PA 211 (453)
Q Consensus 210 ~~ 211 (453)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 128
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=131.69 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCee-EEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeE----
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE-DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM---- 200 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~-~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~---- 200 (453)
....++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 99999999999999999999999999999999888 4589998
Q ss_pred eEEEecccC
Q 012923 201 TACQLASIG 209 (453)
Q Consensus 201 ~~v~~~~~~ 209 (453)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998644
No 129
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=4.9e-18 Score=132.55 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=77.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCC---eEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN---RMT 201 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~g---r~~ 201 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+||+.+++ .+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999999999998 899999999999999999999998885 4777 999
Q ss_pred EEEecccCCCC
Q 012923 202 ACQLASIGPAT 212 (453)
Q Consensus 202 ~v~~~~~~~~~ 212 (453)
.|.++......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999765443
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=132.15 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=77.2
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCC-cceeeee-ccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLG-IDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~-~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v 320 (453)
..++|||+|||+.+|+++|+++|+.||. |..|.|+ +++.+++++|||||+|.+.++|.+||..|+ ..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3469999999999999999999999998 9999998 888899999999999999999999999985 6899999999
Q ss_pred EEccCCCCC
Q 012923 321 QRAIDGPKP 329 (453)
Q Consensus 321 ~~a~~~~~~ 329 (453)
.|+..+..+
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999776543
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=4e-18 Score=133.31 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=78.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-cc---CCeE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KI---GNRM 200 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~---~gr~ 200 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++. .+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999999998999999999999999999999998885 45 8899
Q ss_pred eEEEecccCCC
Q 012923 201 TACQLASIGPA 211 (453)
Q Consensus 201 ~~v~~~~~~~~ 211 (453)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999875543
No 132
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=127.76 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=74.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+||. +| ..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345799999999999999999999999 9999999998 789999999999999999999999 88 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
..++
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7664
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=132.26 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=71.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.|| |+.|+|++++ +++++|||||+|.+.++|.+||. +| ..|+||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3457999999999999999999999999 5599999997 89999999999999999999996 56 8999999999988
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 134
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.1e-18 Score=125.69 Aligned_cols=75 Identities=32% Similarity=0.621 Sum_probs=70.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
+|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|++|++..+..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999995457799999999875
No 135
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=134.27 Aligned_cols=86 Identities=28% Similarity=0.356 Sum_probs=78.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCee--------EEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Ccc
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--------DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKI 196 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~--------~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~ 196 (453)
+....++|||+|||+++|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+||+.++ ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455679999999999999999999999999999 69999998899999999999999999999999877 569
Q ss_pred CCeEeEEEecccCCC
Q 012923 197 GNRMTACQLASIGPA 211 (453)
Q Consensus 197 ~gr~~~v~~~~~~~~ 211 (453)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999875544
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=142.61 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=75.6
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccC--CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYG--EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
..++|||+|||+.+|+++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|.+||..|| ..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 99999999999999999999999999999999999999 899999999999
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 137
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=142.05 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=74.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccC--CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYG--EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G--~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
..++|||+|||+++|+++|+++|++|| .|..|+|++|+.+|+++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999999988 569999999999
Q ss_pred cc
Q 012923 206 AS 207 (453)
Q Consensus 206 ~~ 207 (453)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 138
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=131.21 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE-EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED-CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~-v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|.+||.|.. |+|+.+ .+++++|||||+|.+.++|.+||......|.+|.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345689999999999999999999999999988 889888 599999999999999999999999955779999999998
Q ss_pred cccC
Q 012923 206 ASIG 209 (453)
Q Consensus 206 ~~~~ 209 (453)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8644
No 139
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=132.86 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=72.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
....++|||+|||+++|+++|+++|++||. ..|+|++++ +++++|||||+|.+.++|.+||+.....|.+|.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345689999999999999999999999995 499999998 899999999999999999999976446799999999987
Q ss_pred ccC
Q 012923 207 SIG 209 (453)
Q Consensus 207 ~~~ 209 (453)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 140
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=130.10 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=74.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34556899999999999999999999999999999999998 49999999999999999999999777 56999999999
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 141
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.2e-18 Score=136.24 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=76.0
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|| .+| ..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999999999999999999999999999 788 88999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 142
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.6e-18 Score=137.77 Aligned_cols=104 Identities=19% Similarity=0.368 Sum_probs=90.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
...+++|||+|||+++|+++|+++|++||.|..|+|+++ +.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999875 4569999999999999999999777 569999999999
Q ss_pred cccCCCCCCCcCcccccccccccccccccccccccccccccccEEEEecCCCCccHHHHHHHHhccCC
Q 012923 206 ASIGPATTPAVASTATHQHQHQHQHQHQHQHQQHHQQSEYTQRKIFVSNVGSELEPQKLLAFFSKYGE 273 (453)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 273 (453)
+...... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8532110 567888999999999999985
No 143
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=131.16 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=76.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Cc
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK 195 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~ 195 (453)
......++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+|++.++ ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 9999998899999999999999999999999777 56
Q ss_pred cCCeEeEEEec
Q 012923 196 IGNRMTACQLA 206 (453)
Q Consensus 196 ~~gr~~~v~~~ 206 (453)
|.|+.|+|.++
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999999986
No 144
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1e-17 Score=130.15 Aligned_cols=84 Identities=21% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344578999999999999999999999997 999999999989999999999999999999999 666 66999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9875544
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=130.75 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=75.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+++++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+||..|| ..|+|++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 33457999999999999999999999999999999999875 9999999999999999999999988 889999999999
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=3.9e-18 Score=138.22 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=73.3
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCC---cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
..++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. +| ..|+||.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4579999999999999999999999999 89999999986 9999999999999999999999 88 89999999999
Q ss_pred EccC
Q 012923 322 RAID 325 (453)
Q Consensus 322 ~a~~ 325 (453)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9854
No 147
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=2.2e-18 Score=139.25 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=78.9
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred EccCCC
Q 012923 322 RAIDGP 327 (453)
Q Consensus 322 ~a~~~~ 327 (453)
|+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997543
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=128.58 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred cccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C--ccCCeEE
Q 012923 242 QSEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHIL 318 (453)
Q Consensus 242 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~l~g~~l 318 (453)
....+.++|||+|||+.+|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..++ . .|.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 33445679999999999999999999999999999999864 8999999999999999999988 4 4889999
Q ss_pred EEEEccCC
Q 012923 319 NCQRAIDG 326 (453)
Q Consensus 319 ~v~~a~~~ 326 (453)
.|.+++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999654
No 149
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=133.81 Aligned_cols=86 Identities=31% Similarity=0.520 Sum_probs=78.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||......|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45667999999999999999999999999999999999999899999999999999999999999933669999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 875543
No 150
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=2.1e-18 Score=132.01 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=74.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+||..|| ..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34799999999999999999999999999999999999999999999999999999999999988 89999999999885
Q ss_pred C
Q 012923 325 D 325 (453)
Q Consensus 325 ~ 325 (453)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 151
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=131.36 Aligned_cols=86 Identities=26% Similarity=0.394 Sum_probs=77.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+.+ +++++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999998 89999999999999999999999877 5699999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999765443
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=6.3e-18 Score=133.11 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999877 56999999999
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
++....
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987543
No 153
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.3e-18 Score=135.85 Aligned_cols=82 Identities=26% Similarity=0.398 Sum_probs=76.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998899999999999999999999999887 5599999999
Q ss_pred Eec
Q 012923 204 QLA 206 (453)
Q Consensus 204 ~~~ 206 (453)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 154
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=132.94 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=72.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v 320 (453)
....++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+||..++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345679999999999999999999999999999999986 8999999999999999999886 4799999999
Q ss_pred EEccCCCCCC
Q 012923 321 QRAIDGPKPG 330 (453)
Q Consensus 321 ~~a~~~~~~~ 330 (453)
.|+..+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9997665443
No 155
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=4.9e-18 Score=135.56 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=76.6
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred Ecc
Q 012923 322 RAI 324 (453)
Q Consensus 322 ~a~ 324 (453)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 973
No 156
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=130.81 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=69.4
Q ss_pred cccEEEEecCCC-CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C--ccCCeEEEEE
Q 012923 246 TQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K--NFEGHILNCQ 321 (453)
Q Consensus 246 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~--~l~g~~l~v~ 321 (453)
..++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||..|+ . .|.|++|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 467999999999 9999999999999999999999876 6899999999999999999887 3 4999999999
Q ss_pred EccCCC
Q 012923 322 RAIDGP 327 (453)
Q Consensus 322 ~a~~~~ 327 (453)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 997543
No 157
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=134.34 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=77.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||..+| ..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999 88999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 158
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.7e-18 Score=126.16 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=71.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
||||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++..+..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999998999999999999999999999998778899999999875
No 159
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=7.7e-18 Score=127.15 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=73.3
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+ .++ ..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 666 669999999999854
No 160
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-18 Score=138.18 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=75.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCc-ceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEI-EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
...++|||+|||+.+|+++|+++|+.||.| ..|+|++++ +++++|||||+|.+.++|.+||.. | ..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 345799999999999999999999999999 899999998 999999999999999999999999 6 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97543
No 161
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=129.99 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=75.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC-CCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~-g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
....++|||+|||+++|+++|+++|.+|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999987 999999999999999999999 666 66999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9876544
No 162
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=131.59 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=77.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhc-cCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Cc-cCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQ-YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK-IGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~-~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~-~~gr~~~v 203 (453)
....++|||+|||+++|+++|+++|++ ||.|..|+|++++ +++++|||||+|.+.++|.+||+.++ .. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 455689999999999999999999999 9999999999999 99999999999999999999999888 56 89999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 998655443
No 163
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=135.47 Aligned_cols=82 Identities=13% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEI-EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i-~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|+.||.| ..|+|++++ +++++|||||+|.+.++|.+||+.....|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34557899999999999999999999999999 899999999 9999999999999999999999994467999999999
Q ss_pred eccc
Q 012923 205 LASI 208 (453)
Q Consensus 205 ~~~~ 208 (453)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9863
No 164
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=130.20 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=73.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcce-eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+++ .+|+++|||||+|.+.++|.+||...+..|+||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 34579999999999999999999999999997 889888 7999999999999999999999999338999999999998
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 644
No 165
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=129.03 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred cccEEEEecCCCCccHHHHH----HHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
..++|||+|||+.+++++|+ ++|++||.|..|+|++++.+ +|||||+|.+.++|.+||..|| ..|+|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45699999999999999999 99999999999999998766 8999999999999999999999 8899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++...+
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9996554
No 166
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=6.2e-18 Score=132.45 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=75.7
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.||.|..|.|++++ +++++|||||+|.+.++|.+||..|| ..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999999999999998 99999999999999999999999988 899999999999
Q ss_pred cc
Q 012923 323 AI 324 (453)
Q Consensus 323 a~ 324 (453)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 167
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=133.86 Aligned_cols=83 Identities=28% Similarity=0.571 Sum_probs=76.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecccC
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~ 209 (453)
.++|||+|||+++|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+||......|.|+.|.|.++..+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 47999999999999999999999999999999999998999999999999999999999999446799999999998765
Q ss_pred CCC
Q 012923 210 PAT 212 (453)
Q Consensus 210 ~~~ 212 (453)
...
T Consensus 107 ~~~ 109 (116)
T 1x4b_A 107 EES 109 (116)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 168
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=128.44 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=71.3
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNC 320 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v 320 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+||..++ ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345679999999999999999999999999999999875 8999999999999999999764 5799999999
Q ss_pred EEccCCCCC
Q 012923 321 QRAIDGPKP 329 (453)
Q Consensus 321 ~~a~~~~~~ 329 (453)
.|+..+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999765443
No 169
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.2e-18 Score=128.32 Aligned_cols=80 Identities=18% Similarity=0.417 Sum_probs=74.6
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC-CceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK-PKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~-~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.++|||+|||+.+|+++|+++|++||.|..|.|+++..++. ++|||||+|.+.++|.+|+..|| ..|+|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46999999999999999999999999999999999987766 89999999999999999999988 89999999999995
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
..
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=137.41 Aligned_cols=88 Identities=32% Similarity=0.508 Sum_probs=80.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455678999999999999999999999999999999999998999999999999999999999998884 599999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999765443
No 171
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=6.8e-18 Score=128.31 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=74.6
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+||..|| ..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999999984 88999999999999999999999988 88999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 172
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.6e-17 Score=129.01 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=70.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||..|| ..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345799999999999999999999999999999986 4599999999999999999988 8899999999999
Q ss_pred cCCCCCC
Q 012923 324 IDGPKPG 330 (453)
Q Consensus 324 ~~~~~~~ 330 (453)
.......
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 7665443
No 173
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=127.18 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC---ccCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK---KIGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~---~~~gr~~~v 203 (453)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|++ .||||||+|.+.++|.+|++.++. .|.||.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35678999999999999999999999999999999885 468999999999999999998873 378999999
Q ss_pred EecccC
Q 012923 204 QLASIG 209 (453)
Q Consensus 204 ~~~~~~ 209 (453)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998654
No 174
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.9e-18 Score=124.05 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
...|||+||++.+|+++|+++|.+||.|.+++++. +||||||+|.+.++|.+|++.|| ..|.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45899999999999999999999999999999976 49999999999999999999999 89999999999984
No 175
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=130.52 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=77.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEc-ccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAV-CDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~-i~~v~i~-~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~ 201 (453)
....++|||+|||+++|+++|+++|.+||. |..|+|+ .++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345689999999999999999999999998 9999998 888889999999999999999999999885 46999999
Q ss_pred EEEecccCCC
Q 012923 202 ACQLASIGPA 211 (453)
Q Consensus 202 ~v~~~~~~~~ 211 (453)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 176
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=4.6e-18 Score=137.37 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445667899999999999999999999999999999999999899999999999999999999999877 5699999999
Q ss_pred EecccC
Q 012923 204 QLASIG 209 (453)
Q Consensus 204 ~~~~~~ 209 (453)
.++...
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 998643
No 177
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=125.36 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|+.| .|..|+|+++ .+++++|||||+|.+.++|.+||. ++ ..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34557899999999999999999999999 9999999999 589999999999999999999999 77 55999999999
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
++...+
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987553
No 178
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.8e-18 Score=130.87 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=73.0
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.+ |.+|+..+| ..|+|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 48999999999999999999999999999999999999999999999999999 999999999 8899999999999765
Q ss_pred CC
Q 012923 327 PK 328 (453)
Q Consensus 327 ~~ 328 (453)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 179
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.3e-18 Score=130.53 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=75.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999999888 569999999999
Q ss_pred ccc
Q 012923 206 ASI 208 (453)
Q Consensus 206 ~~~ 208 (453)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 863
No 180
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=130.97 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=76.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|.+||.|..|+|++++ +++++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999998 69999999999999999999999877 56999999999
Q ss_pred ecccC
Q 012923 205 LASIG 209 (453)
Q Consensus 205 ~~~~~ 209 (453)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98643
No 181
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=129.93 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=73.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|+. ++.++|||||+|.+.++|.+||..|| ..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999965 45689999999999999999999998 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+....
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 96543
No 182
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=126.59 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=73.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCC-cceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK-SKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~-~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
..++|||+|||+++|+++|+++|++||.|..|+|+.++.++. ++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987665 89999999999999999999877 5699999999998
Q ss_pred cc
Q 012923 207 SI 208 (453)
Q Consensus 207 ~~ 208 (453)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 183
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.2e-17 Score=130.80 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=75.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+.+|+++|+++|.+||.|..|+|++++ +++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999 99999999999999999999999877 56999999999
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 184
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=127.83 Aligned_cols=86 Identities=21% Similarity=0.400 Sum_probs=76.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456679999999999999999999999999999999999863 389999999999999999999877 5699999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999765543
No 185
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1e-17 Score=141.93 Aligned_cols=86 Identities=20% Similarity=0.310 Sum_probs=77.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+.+|+++|+.+|.+||.|..|+|+.++.++.++|||||+|.+.++|.+||..|+ ..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999887 45999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976544
No 186
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=128.22 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=75.4
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++. .++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3455678999999999999999999999999999999999863 378999999999999999999777 5599999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99876443
No 187
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.2e-18 Score=130.98 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
+..++|||+|||+++|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 345899999999999999999999999999999999998899999999999999999999999877 5699999999987
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 188
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=5.7e-18 Score=134.97 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=72.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCee--EEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIE--DCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~--~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
....++|||+|||+++|+++|+++|++| .|. .|+|++|+. |+++|||||+|.+.++|.+||+.++..|.||.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3456899999999999999999999999 677 999999985 999999999999999999999987788999999998
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
++.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 189
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=132.77 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=73.6
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccC-CCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDK-ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~-~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
.....++|||+|||+.+|+++|+++|+.|| |..|+|++++ .+|+++|||||+|.+.++|.+|| .++ ..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344567999999999999999999999999 9999999998 68999999999999999999999 788 8999999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++..+.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9996543
No 190
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.7e-18 Score=131.54 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=75.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 5899999999999999999999999999999999999899999999999999999999999877 559999999999864
Q ss_pred C
Q 012923 209 G 209 (453)
Q Consensus 209 ~ 209 (453)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 3
No 191
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=128.56 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=70.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC-----eEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG-----HIL 318 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g-----~~l 318 (453)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ |||||+|.+.++|.+||..|| ..|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34579999999999999999999999999999999875 899999999999999999999 88999 999
Q ss_pred EEEEccCCC
Q 012923 319 NCQRAIDGP 327 (453)
Q Consensus 319 ~v~~a~~~~ 327 (453)
.|.++..+.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999997654
No 192
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.1e-17 Score=135.29 Aligned_cols=88 Identities=20% Similarity=0.345 Sum_probs=79.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344557899999999999999999999999999999999999899999999999999999999999877 5699999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999755443
No 193
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=127.83 Aligned_cols=77 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILNCQ 321 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~v~ 321 (453)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|.+||..|+ ..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34579999999999999999999999999999999864 8999999999999999999876 35999999999
Q ss_pred EccCCC
Q 012923 322 RAIDGP 327 (453)
Q Consensus 322 ~a~~~~ 327 (453)
|+..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997654
No 194
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=3.1e-18 Score=124.84 Aligned_cols=75 Identities=29% Similarity=0.527 Sum_probs=71.5
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
+|||+|||+.+|+++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+||...+..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998558899999999875
No 195
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-18 Score=129.37 Aligned_cols=80 Identities=30% Similarity=0.481 Sum_probs=73.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999899999999999999999999999888 4588888877654
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 196
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=134.70 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=76.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|| .|| ..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999999999999999999999999999 777 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
..+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7643
No 197
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=130.10 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
.++|||+|||+++|+++|+++|+.| .|..|+|++|+ +|+++|||||+|.+.++|.+||......|.||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 89999999998 5999999999999999999999655577999999998875
No 198
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.7e-18 Score=122.50 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=67.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
.+..|||+||++.+|+++|+++|.+||+|.+++|+. ++|||||+|.+.++|.+|++.|| ..+.||.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 68999999999999999999998 55999999999984
No 199
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=139.17 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=76.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE--EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-----ccCC
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-----KIGN 198 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~--v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-----~~~g 198 (453)
.....++|||+|||+++|+++|+++|++||.|.. |+|++|+.+++++|||||+|.+. +|.+||..+++ .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455789999999999999999999999999977 99999999999999999999999 99999999884 7999
Q ss_pred eEeEEEecccC
Q 012923 199 RMTACQLASIG 209 (453)
Q Consensus 199 r~~~v~~~~~~ 209 (453)
|.|.|.++...
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998654
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-18 Score=129.85 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=73.9
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999 88999998887653
No 201
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=8.9e-18 Score=133.62 Aligned_cols=80 Identities=15% Similarity=0.312 Sum_probs=73.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~---i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v 203 (453)
....++|||+|||+++|+++|+++|+.||. |..|+|++++. ++++|||||+|.+.++|.+||+.....|.||.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345689999999999999999999999999 89999999985 99999999999999999999994446699999999
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9875
No 202
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=131.94 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=75.7
Q ss_pred ccccEEEEecCCCCccHHHHH---HHHhccCCcceeeeeccCCCC---CCceEEEEEECCHHHHHHHHHcCC-CccCCeE
Q 012923 245 YTQRKIFVSNVGSELEPQKLL---AFFSKYGEIEEGPLGIDKATG---KPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~d~~~g---~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~ 317 (453)
...++|||+|||+.+++++|+ ++|++||.|..|.|++++.++ +++|||||+|.+.++|.+||..|| ..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999988754 556999999999999999999999 8899999
Q ss_pred EEEEEccCCC
Q 012923 318 LNCQRAIDGP 327 (453)
Q Consensus 318 l~v~~a~~~~ 327 (453)
|+|.++.+++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997665
No 203
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=126.33 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeE
Q 012923 128 PVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~----~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~ 202 (453)
...++|||+|||+++|+++|+ ++|++||.|..|+|++++.+ +|||||+|.+.++|.+||+.+++ .|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456799999999999999999 99999999999999998854 89999999999999999998885 59999999
Q ss_pred EEecccCC
Q 012923 203 CQLASIGP 210 (453)
Q Consensus 203 v~~~~~~~ 210 (453)
|.++....
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99986543
No 204
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=127.69 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=71.9
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.| +|+++ .+++++|||||+|.+.++|.+||..|| ..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456799999999999999999999999977 56665 689999999999999999999999999 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 97654
No 205
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-18 Score=132.04 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~ 202 (453)
..+.+++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3455789999999999999999999999999999999875 6899999999999999999876 359999999
Q ss_pred EEecccCCCC
Q 012923 203 CQLASIGPAT 212 (453)
Q Consensus 203 v~~~~~~~~~ 212 (453)
|.++......
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999765544
No 206
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.2e-17 Score=132.81 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=73.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCC---cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. +| ..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34579999999999999999999999999 89999999976 9999999999999999999999 67 8899999999
Q ss_pred EEccCC
Q 012923 321 QRAIDG 326 (453)
Q Consensus 321 ~~a~~~ 326 (453)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998543
No 207
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-18 Score=134.65 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCe----eEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEI----EDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i----~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v 203 (453)
...++|||+|||+++|+++|++||++||.| ..|+|+++. +|+++|||||+|.+.++|.+||+..+..|.+|.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999999975 689999996 899999999999999999999998557799999999
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8874
No 208
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.1e-18 Score=136.39 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~---i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~ 200 (453)
......++|||+|||+++|+++|+++|++||. |..|+|++|+. |+++|||||+|.+.++|.+||+ ++ ..|.||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 89999999995 9999999999999999999999 66 6699999
Q ss_pred eEEEecc
Q 012923 201 TACQLAS 207 (453)
Q Consensus 201 ~~v~~~~ 207 (453)
|.|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999875
No 209
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.3e-17 Score=137.60 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=78.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|+ ..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999877 56999999999
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
++....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997543
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=7.9e-18 Score=129.91 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccC-CCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDK-VSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~-~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
....++|||+|||+++|+++|+++|++|| |..|+|++++ .+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 58999999999999999999999 566 66999999999
Q ss_pred ecccC
Q 012923 205 LASIG 209 (453)
Q Consensus 205 ~~~~~ 209 (453)
++...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98643
No 211
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.1e-17 Score=125.53 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=74.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999984 78999999999999999999999877 569999999999
Q ss_pred cccCC
Q 012923 206 ASIGP 210 (453)
Q Consensus 206 ~~~~~ 210 (453)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 86543
No 212
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=127.29 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=71.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAIDG 326 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~~ 326 (453)
++|||+|||+.+|+++|+++|++||.|..|.|+++ ++|||||+|.+.++|.+||..|+ ..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999886 69999999999999999999998 8999999999999776
Q ss_pred CC
Q 012923 327 PK 328 (453)
Q Consensus 327 ~~ 328 (453)
+.
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 213
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=126.68 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTA 202 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~ 202 (453)
..+.+++|||+|||+++|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998864 7899999999999999999764 459999999
Q ss_pred EEecccCCCC
Q 012923 203 CQLASIGPAT 212 (453)
Q Consensus 203 v~~~~~~~~~ 212 (453)
|.++......
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999755443
No 214
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=4.9e-17 Score=130.88 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=77.9
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+++++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||..+| ..|+|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456799999999999999999999999999999999998 99999999999999999999999988 88999999999
Q ss_pred EccCCC
Q 012923 322 RAIDGP 327 (453)
Q Consensus 322 ~a~~~~ 327 (453)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 215
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=129.77 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
..+|||+|||+.+|+++|+++|+.| .|..|+|++++. |+++|||||+|.+.++|.+||. +| ..|+||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999975 9999999999999999999995 66 889999999988854
No 216
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=132.49 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=73.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
..++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999988999999999999999999999 666 56999999999986
Q ss_pred c
Q 012923 208 I 208 (453)
Q Consensus 208 ~ 208 (453)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 217
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=135.51 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=75.8
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..|| ..|+|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999 88999999998
Q ss_pred Ec
Q 012923 322 RA 323 (453)
Q Consensus 322 ~a 323 (453)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 218
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=134.66 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=75.2
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. +| ..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3445799999999999999999999999999998788888899999999999999999999999 78 899999999999
Q ss_pred ccCC
Q 012923 323 AIDG 326 (453)
Q Consensus 323 a~~~ 326 (453)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 219
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=132.40 Aligned_cols=84 Identities=17% Similarity=0.352 Sum_probs=73.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 356799999999999999999999999999665554444488999999999999999999999999 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 76543
No 220
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=127.65 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=69.2
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeEE
Q 012923 128 PVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTAC 203 (453)
Q Consensus 128 ~~~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~v 203 (453)
..+++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+||+.++ ..|.||.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 9999999999999999999999875 4799999999999999999876 2489999999
Q ss_pred EecccCC
Q 012923 204 QLASIGP 210 (453)
Q Consensus 204 ~~~~~~~ 210 (453)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997543
No 221
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=5e-18 Score=128.46 Aligned_cols=79 Identities=24% Similarity=0.443 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecccC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASIG 209 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~~ 209 (453)
++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.+ |.+|+..++ ..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 999999988 4599999999998754
Q ss_pred C
Q 012923 210 P 210 (453)
Q Consensus 210 ~ 210 (453)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 222
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=129.00 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=73.4
Q ss_pred cccEEEEecCCCCc------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe-E
Q 012923 246 TQRKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-I 317 (453)
Q Consensus 246 ~~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~-~ 317 (453)
..++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||..|| ..|+|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 35799999999999 889999999999999999998 3689999999999999999999999999 889998 9
Q ss_pred EEEEEccCCC
Q 012923 318 LNCQRAIDGP 327 (453)
Q Consensus 318 l~v~~a~~~~ 327 (453)
|.|.++....
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999996543
No 223
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-18 Score=130.92 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=73.9
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+||. || ..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4579999999999999999999999999998 777888889999999999999999999999 88 89999999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 224
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=2e-17 Score=129.00 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=69.7
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccC-CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYG-EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..++|||+|||+.+|+++|+++|+.|| .|..+.|+.+ +++|||||+|.+.++|.+||..|| ..|+|++|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346999999999999999999999999 8999988642 479999999999999999999999 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6544
No 225
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=131.48 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=77.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+..+++ .|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999999 999999999999999999999998774 59999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 875444
No 226
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=128.89 Aligned_cols=84 Identities=20% Similarity=0.413 Sum_probs=75.6
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
.......++|||+|||.++|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+|++.++ ..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455677999999999999999999999999999999999985 3589999999999999999999877 569999999
Q ss_pred EEecccC
Q 012923 203 CQLASIG 209 (453)
Q Consensus 203 v~~~~~~ 209 (453)
|.++..+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998644
No 227
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.5e-17 Score=135.61 Aligned_cols=87 Identities=23% Similarity=0.400 Sum_probs=78.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344557899999999999999999999999999999999999899999999999999999999999888 5599999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99875433
No 228
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=134.72 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=75.5
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998899999999999999999999999888 4599999999
Q ss_pred Eec
Q 012923 204 QLA 206 (453)
Q Consensus 204 ~~~ 206 (453)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 229
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=127.00 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~~v 203 (453)
.+.+++|||+|||+++|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|++.++ ..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 455789999999999999999999999999999998764 6899999999999999999765 3489999999
Q ss_pred EecccCCCC
Q 012923 204 QLASIGPAT 212 (453)
Q Consensus 204 ~~~~~~~~~ 212 (453)
.++......
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999765443
No 230
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=128.36 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=73.5
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|+++ +|||||+|.+.++|.+||..|+ ..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345679999999999999999999999999999999876 8999999999999999999998 899999999999
Q ss_pred ccCCCCC
Q 012923 323 AIDGPKP 329 (453)
Q Consensus 323 a~~~~~~ 329 (453)
+..++..
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9776544
No 231
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=126.72 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=73.4
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||..|| ..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456799999999999999999999977 478888888899999999999999999999999988 899999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 97654
No 232
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.6e-17 Score=127.38 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+.+ +.++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999664 4689999999999999999998877 5699999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99875543
No 233
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=130.83 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=73.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCC---eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGE---IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTA 202 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~---i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~ 202 (453)
.....++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||...+..|.||.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 4456789999999999999999999999998 89999999986 9999999999999999999999444669999999
Q ss_pred EEecc
Q 012923 203 CQLAS 207 (453)
Q Consensus 203 v~~~~ 207 (453)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99875
No 234
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.4e-17 Score=132.69 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=72.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcc--eeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIE--EGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~ 322 (453)
...++|||+|||+.+|+++|+++|+.| .|+ .|+|++++. |+++|||||+|.+.++|.+||..++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345799999999999999999999999 677 999999986 9999999999999999999999866899999999988
Q ss_pred ccC
Q 012923 323 AID 325 (453)
Q Consensus 323 a~~ 325 (453)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 235
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=128.36 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=69.8
Q ss_pred cccccEEEEecCCCC-ccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC---CccCCeEEE
Q 012923 244 EYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH---KNFEGHILN 319 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~---~~l~g~~l~ 319 (453)
....++|||+|||+. +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+||..|+ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345679999999998 999999999999999999999754 8999999999999999999875 469999999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
|.++..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99996543
No 236
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=122.84 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=69.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+||..+| ..|+|++|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 45799999999999999999999999999999996 6899999999999999999999 88999999999997
Q ss_pred CCCC
Q 012923 325 DGPK 328 (453)
Q Consensus 325 ~~~~ 328 (453)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6553
No 237
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=129.17 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=74.9
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++ +.++|||||+|.+.++|.+|+..|| ..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999885 4589999999999999999999988 88999999999
Q ss_pred EccCC
Q 012923 322 RAIDG 326 (453)
Q Consensus 322 ~a~~~ 326 (453)
++..+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 238
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=127.40 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=73.0
Q ss_pred CCCCcCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCC
Q 012923 126 EDPVHRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN 198 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~------te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~g 198 (453)
.....++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||..+++ .|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456899999999999 789999999999999999988 34899999999999999999999998885 5999
Q ss_pred e-EeEEEecccC
Q 012923 199 R-MTACQLASIG 209 (453)
Q Consensus 199 r-~~~v~~~~~~ 209 (453)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998643
No 239
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=5.7e-17 Score=136.54 Aligned_cols=84 Identities=24% Similarity=0.416 Sum_probs=77.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||..+++ .|.|+.|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345578999999999999999999999999999999999998999999999999999999999998884 5999999999
Q ss_pred ecccC
Q 012923 205 LASIG 209 (453)
Q Consensus 205 ~~~~~ 209 (453)
++...
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 98754
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=5.7e-17 Score=130.54 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=73.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .++ ..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 566 569999999999864
Q ss_pred C
Q 012923 209 G 209 (453)
Q Consensus 209 ~ 209 (453)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 241
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=129.89 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=73.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCC---cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGE---IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
...++|||+|||+.+|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+||. +| ..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34579999999999999999999999998 89999999987 9999999999999999999999 77 8899999999
Q ss_pred EEccCC
Q 012923 321 QRAIDG 326 (453)
Q Consensus 321 ~~a~~~ 326 (453)
.++..+
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998643
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=122.91 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=66.4
Q ss_pred cEEEEecCCCCc------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe-EEE
Q 012923 248 RKIFVSNVGSEL------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH-ILN 319 (453)
Q Consensus 248 ~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~-~l~ 319 (453)
++|||+|||+.+ |+++|+++|++||.|..|+|+ +.+|+++|||||+|.+.++|.+||..|| ..|+|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999987 3589999999999999999999999999 889999 887
Q ss_pred E
Q 012923 320 C 320 (453)
Q Consensus 320 v 320 (453)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=122.25 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=65.3
Q ss_pred cCeEEEcCCCCCC------CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCe-Ee
Q 012923 130 HRKIFVHGLGWDT------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNR-MT 201 (453)
Q Consensus 130 ~~~lfV~nLp~~~------te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr-~~ 201 (453)
+++|||+|||+.+ |+++|+++|++||.|..|+|++ .+++++|||||+|.+.++|.+|++.+++ .|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3799999999999 7899999999999999999873 4899999999999999999999999884 58898 77
Q ss_pred EE
Q 012923 202 AC 203 (453)
Q Consensus 202 ~v 203 (453)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=129.08 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=73.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc--------CC
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF--------EG 315 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l--------~g 315 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++++ ++.++|||||+|.+.++|.+||..|| ..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 455799999999999999999999999999999999998 99999999999999999999999998 777 57
Q ss_pred eEEEEEEcc
Q 012923 316 HILNCQRAI 324 (453)
Q Consensus 316 ~~l~v~~a~ 324 (453)
++|.|.|+.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 889999986
No 245
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-17 Score=130.45 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=71.9
Q ss_pred ccccEEEEecCCCCccHHHHH----HHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
...++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|.+||..|| ..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345799999999999999876 6999999999988753 68899999999999999999999999 899999999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
|.|+..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997654
No 246
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=134.11 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=73.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+||. ++ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999987777777799999999999999999999999 66 669999999999
Q ss_pred ccc
Q 012923 206 ASI 208 (453)
Q Consensus 206 ~~~ 208 (453)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 853
No 247
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=1.1e-17 Score=136.02 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=72.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQL 205 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~ 205 (453)
.....++|||+|||+++|+++|+++|++|| |..|+|++|+. ++++|||||+|.+.++|.+||...+..|.+|.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 334568999999999999999999999999 77999999984 9999999999999999999995544679999999998
Q ss_pred cccCC
Q 012923 206 ASIGP 210 (453)
Q Consensus 206 ~~~~~ 210 (453)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86543
No 248
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=138.60 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=77.0
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcce--------eeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEE--------GPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH 316 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~ 316 (453)
..++|||+|||+.+|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||..|| ..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999999 9999998899999999999999999999999999 889999
Q ss_pred EEEEEEccCCC
Q 012923 317 ILNCQRAIDGP 327 (453)
Q Consensus 317 ~l~v~~a~~~~ 327 (453)
+|.|.++..++
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999997654
No 249
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=129.14 Aligned_cols=83 Identities=13% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEcccCCCC---CcceEEEEEEccHHHHHHHHHcCC-CccCCeE
Q 012923 128 PVHRKIFVHGLGWDTKAETLI---DAFKQYGEIEDCKAVCDKVSG---KSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~---~~f~~~G~i~~v~i~~d~~~g---~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~ 200 (453)
...++|||+|||+++|+++|+ ++|.+||.|..|+|++++.++ +++|||||+|.+.++|.+||+.|+ ..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 999999999999999988654 566999999999999999999977 4599999
Q ss_pred eEEEecccCC
Q 012923 201 TACQLASIGP 210 (453)
Q Consensus 201 ~~v~~~~~~~ 210 (453)
|.|.++..++
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 250
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=130.69 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=71.7
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCc----ceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEI----EEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQ 321 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~ 321 (453)
...+|||+|||+.+|+++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|.+||...+..|.||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45699999999999999999999999875 68999998 48999999999999999999999984488999999998
Q ss_pred EccC
Q 012923 322 RAID 325 (453)
Q Consensus 322 ~a~~ 325 (453)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8853
No 251
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=5.9e-17 Score=126.33 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=70.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYG-EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G-~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~ 204 (453)
.+..++|||+|||+++|+++|+++|++|| .|..|+|+.+ +++|||||+|.+.++|.+||+.+++ .|.||.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 9999988643 4889999999999999999998885 5999999999
Q ss_pred ecccC
Q 012923 205 LASIG 209 (453)
Q Consensus 205 ~~~~~ 209 (453)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 252
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=124.25 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=70.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccC--CeEEEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFE--GHILNCQ 321 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~--g~~l~v~ 321 (453)
...++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+||..|| ..|. |++|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34579999999999999999999999999999999764 7899999999999999999998 8899 9999999
Q ss_pred EccCCC
Q 012923 322 RAIDGP 327 (453)
Q Consensus 322 ~a~~~~ 327 (453)
|+.+++
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997654
No 253
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=120.08 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=69.3
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC-C-CccCCeEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP-H-KNFEGHILNCQ 321 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~-~-~~l~g~~l~v~ 321 (453)
....++|||+|||+.+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|+..| + ..|+|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345579999999999999999999999999999999875 899999999999999999988 7 88999999999
Q ss_pred Ecc
Q 012923 322 RAI 324 (453)
Q Consensus 322 ~a~ 324 (453)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 254
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=120.66 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=69.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+||..|| ..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 345799999999999999999999999999999997 3499999999999999999998 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76543
No 255
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=128.13 Aligned_cols=82 Identities=17% Similarity=0.384 Sum_probs=74.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c-------
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I------- 196 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~------- 196 (453)
..+...++|||+|||+++|+++|+++|.+||.|..|+|++++ +++++|||||+|.+.++|.+||..+++. |
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999999 9999999999999999999999988744 6
Q ss_pred -CCeEeEEEecc
Q 012923 197 -GNRMTACQLAS 207 (453)
Q Consensus 197 -~gr~~~v~~~~ 207 (453)
.++.|.|.++.
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 57889998875
No 256
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=2.6e-17 Score=127.65 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=75.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
....++|||+|||+++|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+. ....|.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3446899999999999999999999999999999999999 99999999999999999999999 556799999999998
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7543
No 257
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=123.83 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=71.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||..|+ ..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345579999999999999999999999999999999865 8999999999999999999999 889999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 258
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=123.82 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=72.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|.+||.| +|+.+ .+++++|||||+|.+.++|.+||..++. .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567999999999999999999999999977 56776 4899999999999999999999998884 5999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9976543
No 259
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=128.49 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~----~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~ 200 (453)
....+++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|+..++ ..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 6999999999998754 67899999999999999999999888 4599999
Q ss_pred eEEEecccC
Q 012923 201 TACQLASIG 209 (453)
Q Consensus 201 ~~v~~~~~~ 209 (453)
|.|.++...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999998644
No 260
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=128.37 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCCCcCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC---CccCCeEe
Q 012923 126 EDPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ---KKIGNRMT 201 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~-~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~---~~~~gr~~ 201 (453)
....+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.++ ..|.||.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 99999999999999999999874 47899999999999999999775 35899999
Q ss_pred EEEecccCC
Q 012923 202 ACQLASIGP 210 (453)
Q Consensus 202 ~v~~~~~~~ 210 (453)
.|.++....
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999986443
No 261
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=126.01 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=70.0
Q ss_pred cEEEEecC----CCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECC----HHH----HHHHHH--cCC-Cc
Q 012923 248 RKIFVSNV----GSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT----VDA----AKKALE--EPH-KN 312 (453)
Q Consensus 248 ~~l~V~nL----p~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~----~~~----A~~Al~--~~~-~~ 312 (453)
+.|||+|| |+.+++..|+.+|+.||.|.+|.++.|+.||+++|||||+|.+ .++ |.+|+. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999995 333 899988 778 89
Q ss_pred cCCeEEEEEEcc
Q 012923 313 FEGHILNCQRAI 324 (453)
Q Consensus 313 l~g~~l~v~~a~ 324 (453)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 262
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-17 Score=129.24 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|.. .++++..+++++|||||+|.+.++|.+||+ ++ ..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999988 778887789999999999999999999999 66 669999999999
Q ss_pred cccCC
Q 012923 206 ASIGP 210 (453)
Q Consensus 206 ~~~~~ 210 (453)
+....
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 86543
No 263
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=3.9e-17 Score=126.62 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=74.4
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccC
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~ 325 (453)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++ +++++|||||+|.+.++|.+||. ....|+|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 44799999999999999999999999999999999998 99999999999999999999999 33889999999999976
Q ss_pred CCC
Q 012923 326 GPK 328 (453)
Q Consensus 326 ~~~ 328 (453)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 264
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.8e-17 Score=124.02 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=69.5
Q ss_pred ccccEEEEecCCC-CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 245 YTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 245 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
...++|||+|||+ .+|+++|+++|++||.|..|+|. +|||||+|.+.++|.+||..|| ..|.|++|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3457999999998 99999999999999999999983 7899999999999999999988 889999999999
Q ss_pred ccCCCCC
Q 012923 323 AIDGPKP 329 (453)
Q Consensus 323 a~~~~~~ 329 (453)
+.....+
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9776543
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=122.30 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|. +.++. ++++|||||+|.+.++|.+||..|| ..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457999999999999999999999999997 67764 3679999999999999999999999 8999999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
..+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 266
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=119.36 Aligned_cols=78 Identities=19% Similarity=0.436 Sum_probs=70.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..+++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 57999999999999999998874 69999999999
Q ss_pred cccCCCC
Q 012923 206 ASIGPAT 212 (453)
Q Consensus 206 ~~~~~~~ 212 (453)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 8765443
No 267
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=122.61 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=70.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCC-----eEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGN-----RMT 201 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~g-----r~~ 201 (453)
...++|||+|||+++|+++|+++|.+||.|..|+|+.+ |||||+|.+.++|.+||+.|+. .|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999886 7999999999999999998885 5888 999
Q ss_pred EEEecccCCC
Q 012923 202 ACQLASIGPA 211 (453)
Q Consensus 202 ~v~~~~~~~~ 211 (453)
.|.++.....
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999976543
No 268
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=121.06 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=69.0
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhcc--CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKY--GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
....++|||+|||+.+|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+||..|| ..|+|++|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456799999999999999999999999 999998874 6799999999999999999998 8899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++..+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9997654
No 269
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=124.04 Aligned_cols=81 Identities=20% Similarity=0.445 Sum_probs=72.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||.++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3455789999999999999999999999999999999876 6899999999999999998877 56999999999
Q ss_pred ecccCCCC
Q 012923 205 LASIGPAT 212 (453)
Q Consensus 205 ~~~~~~~~ 212 (453)
++...+..
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99765543
No 270
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=121.33 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=70.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccC--CeEeE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIG--NRMTA 202 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~--gr~~~ 202 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|++.++ ..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455689999999999999999999999999999998864 6899999999999999999877 5588 99999
Q ss_pred EEecccCC
Q 012923 203 CQLASIGP 210 (453)
Q Consensus 203 v~~~~~~~ 210 (453)
|.++...+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987543
No 271
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=117.27 Aligned_cols=76 Identities=28% Similarity=0.394 Sum_probs=68.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC-C-CccCCeEeE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP-Q-KKIGNRMTA 202 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~-~-~~~~gr~~~ 202 (453)
..+...++|||+|||.++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..+ + ..+.|+.|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34566789999999999999999999999999999999863 689999999999999999987 6 569999999
Q ss_pred EEec
Q 012923 203 CQLA 206 (453)
Q Consensus 203 v~~~ 206 (453)
|.++
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9986
No 272
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=119.12 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=68.7
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|++||.|..|+|++ +||||+|.+.++|.+||..|| ..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3457999999999999999999999999999999973 499999999999999999998 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 273
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-17 Score=129.14 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|.+||.|..|.+..+..+++++|||||+|.+.++|.+||..++ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999544333333388999999999999999999999887 559999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976544
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.2e-16 Score=124.81 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=70.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|| ..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999997 7899999999999999999988 88999999999
Q ss_pred EccCCCC
Q 012923 322 RAIDGPK 328 (453)
Q Consensus 322 ~a~~~~~ 328 (453)
++...+.
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9976543
No 275
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=124.45 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=68.7
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEcc----HHH----HHHHHH--cCC-Cc
Q 012923 131 RKIFVHGL----GWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT----RSG----ARKALK--EPQ-KK 195 (453)
Q Consensus 131 ~~lfV~nL----p~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~----~~~----a~~A~~--~~~-~~ 195 (453)
++|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 322 888888 666 55
Q ss_pred cCCeEeEEEecc
Q 012923 196 IGNRMTACQLAS 207 (453)
Q Consensus 196 ~~gr~~~v~~~~ 207 (453)
|.||.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 276
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=125.38 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||..|| ..|.|++|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46999999999999999999999999999999875 48999999999999999999999 889999999999975
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 277
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=122.31 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=70.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+||..++ ..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345799999999999999999999999988766 3478899999999999999999999999 8899999999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
..+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6654
No 278
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=122.61 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=74.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|+.| ..|++++++.+++++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567899999999999999999999977 377888888899999999999999999999999877 5699999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99975543
No 279
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.6e-17 Score=124.15 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|+|++ ++|||||+|.+.++|.+||..|| ..|+|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3457999999999999999999999999999999974 48999999999999999999998 8899999999998
Q ss_pred cC
Q 012923 324 ID 325 (453)
Q Consensus 324 ~~ 325 (453)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 280
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=1.6e-16 Score=124.94 Aligned_cols=73 Identities=21% Similarity=0.440 Sum_probs=67.8
Q ss_pred cccEEEEecCCCC-ccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 246 TQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 246 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+||..|+ ..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999998 38999999999999999999998 8899999999999
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 281
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5e-18 Score=134.99 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=77.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccC
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIED--------CKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIG 197 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~--------v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~ 197 (453)
....++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+.++|.+||..++ ..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 445689999999999999999999999999999 9999998899999999999999999999999888 5599
Q ss_pred CeEeEEEecccCCC
Q 012923 198 NRMTACQLASIGPA 211 (453)
Q Consensus 198 gr~~~v~~~~~~~~ 211 (453)
|+.|.|.++.....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999875544
No 282
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=2.8e-16 Score=120.22 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=69.3
Q ss_pred ccccccEEEEecCCC-CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 243 SEYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
.....++|||+|||+ .+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+||..+| ..|+|++|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567999999998 99999999999999999999982 7999999999999999999998 8899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++..+.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9986543
No 283
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.4e-16 Score=123.16 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||.++|+++|+++|++||.|..|+|+ +++|||||+|.+.++|.+|+..++ ..|.|+.|.|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344557899999999999999999999999999999987 367999999999999999999877 5599999999
Q ss_pred Eeccc
Q 012923 204 QLASI 208 (453)
Q Consensus 204 ~~~~~ 208 (453)
.++..
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98753
No 284
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=9.4e-17 Score=123.24 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.6
Q ss_pred cccEEEEecCCCCccHHHHH----HHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
..++|||+|||+.+|+++|+ ++|++||.|..|.|++ ++.++|||||+|.+.++|.+|+..|| ..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45799999999999999999 9999999999999874 57789999999999999999999988 8899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.++....
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9997654
No 285
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-16 Score=134.67 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=77.4
Q ss_pred ccccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 243 SEYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|| ..|+|++|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456899999999999999999999999999999999998 99999999999999999999999999 89999999999
Q ss_pred EccCC
Q 012923 322 RAIDG 326 (453)
Q Consensus 322 ~a~~~ 326 (453)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99654
No 286
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=1.5e-16 Score=122.16 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=72.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLI----DAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMT 201 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~----~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~ 201 (453)
.+.+++|||+|||+++|+++|+ ++|++||.|..|+|+. ++.++|||||+|.+.++|.+|+..++ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 57889999999999999999999877 55999999
Q ss_pred EEEecccC
Q 012923 202 ACQLASIG 209 (453)
Q Consensus 202 ~v~~~~~~ 209 (453)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998754
No 287
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=125.09 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=69.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCC---CCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEE
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVS---GKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQ 204 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~---g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~ 204 (453)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.++ .+.|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 4568999999999999999999999999999 888888876 7999999999999999999999884 4788888876
Q ss_pred ec
Q 012923 205 LA 206 (453)
Q Consensus 205 ~~ 206 (453)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 288
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-16 Score=121.12 Aligned_cols=79 Identities=25% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.++ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999998854 6899999999999999998887 55999999999
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
++....
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 987543
No 289
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=5.5e-16 Score=118.63 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCCcCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeE
Q 012923 125 DEDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~ 202 (453)
...+.+++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..+++ .+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456679999999998 99999999999999999999983 78999999999999999998874 58999999
Q ss_pred EEecccC
Q 012923 203 CQLASIG 209 (453)
Q Consensus 203 v~~~~~~ 209 (453)
|.++...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998643
No 290
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=121.03 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=69.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|.+||.|. ++++.+ +++|||||+|.+.++|.+|++.++ ..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999997 666654 688999999999999999999877 55999999999
Q ss_pred ecccC
Q 012923 205 LASIG 209 (453)
Q Consensus 205 ~~~~~ 209 (453)
++...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98654
No 291
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=2.8e-16 Score=139.13 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=76.2
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
+.++|||+|||+.+|+++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||..+| ..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999 88999999999986
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 292
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.7e-16 Score=118.01 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=67.0
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|+.||.|..| +.++.+++ ||||+|.+.++|.+||. +| ..|+|+.|.|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4699999999999999999999999999987 55665665 99999999999999999 88 899999999998864
Q ss_pred CC
Q 012923 326 GP 327 (453)
Q Consensus 326 ~~ 327 (453)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 293
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=9.2e-17 Score=132.72 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=72.6
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceee--eecc---CCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeE
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP--LGID---KATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~--i~~d---~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~ 317 (453)
....++|||+|||+.+|+++|+++|+.||.|..+. ++.+ ..+++++|||||+|.+.++|.+||..|| ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34557999999999999999999999999998752 2222 3579999999999999999999999999 8999999
Q ss_pred EEEEEccCCC
Q 012923 318 LNCQRAIDGP 327 (453)
Q Consensus 318 l~v~~a~~~~ 327 (453)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 294
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=124.04 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~~ 207 (453)
..++|||+|||+++|+++|+++|++||.|..|+|+. ++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998874 57899999999999999999888 55999999999987
Q ss_pred cCCC
Q 012923 208 IGPA 211 (453)
Q Consensus 208 ~~~~ 211 (453)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 5443
No 295
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=116.53 Aligned_cols=78 Identities=19% Similarity=0.352 Sum_probs=69.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+++ ||||+|.+.++|.+|+..++ ..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 4456789999999999999999999999999999998843 99999999999999999877 55999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9976544
No 296
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=116.53 Aligned_cols=78 Identities=22% Similarity=0.421 Sum_probs=69.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+++ ||||+|.+.++|.+|+..++ ..|.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999998843 99999999999999999877 55999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9975543
No 297
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=120.72 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=70.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||+++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999988766 2378999999999999999999999888 55999999999
Q ss_pred ecccCC
Q 012923 205 LASIGP 210 (453)
Q Consensus 205 ~~~~~~ 210 (453)
++....
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 986543
No 298
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=3.4e-16 Score=122.26 Aligned_cols=79 Identities=20% Similarity=0.440 Sum_probs=69.7
Q ss_pred cCCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 124 ADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 124 ~~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
.......++|||+|||+++|+++|+++|++||.|..|+|+ +|||||+|.+.++|.+|+..++ ..|.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455677999999999999999999999999999999987 6899999999999999999877 559999999
Q ss_pred EEecccCC
Q 012923 203 CQLASIGP 210 (453)
Q Consensus 203 v~~~~~~~ 210 (453)
|.++....
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99987543
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=3.3e-16 Score=133.61 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=74.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.++ ..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999999 99999999999999999999999888 5699999999998
Q ss_pred cc
Q 012923 207 SI 208 (453)
Q Consensus 207 ~~ 208 (453)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 300
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=117.08 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=68.6
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|| .+|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|| ..|.|++|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34579999996 89999999999999999999985 458999999999999999999999 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..++.
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76554
No 301
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.9e-16 Score=117.27 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=63.3
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEcc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAI 324 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~ 324 (453)
...++|||+|||+.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.++. .....+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcC
Confidence 34579999999999999999999999999999999875 6999999999999998432 22355779999999997
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 302
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.5e-16 Score=117.55 Aligned_cols=77 Identities=23% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEec
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLA 206 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~ 206 (453)
....++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.++.. ....+.++.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEc
Confidence 345689999999999999999999999999999999874 78999999999999985322 223367999999998
Q ss_pred ccC
Q 012923 207 SIG 209 (453)
Q Consensus 207 ~~~ 209 (453)
..+
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 644
No 303
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=7.3e-16 Score=150.19 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=77.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+.+|+++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||..|+ ..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999999899999999999999999999999888 5699999999999
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 304
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=9e-16 Score=119.04 Aligned_cols=78 Identities=31% Similarity=0.440 Sum_probs=69.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|.+||.|..|+|+ ++||||+|.+.++|.+||+.|+ ..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999987 3599999999999999999877 559999999999
Q ss_pred cccCCCC
Q 012923 206 ASIGPAT 212 (453)
Q Consensus 206 ~~~~~~~ 212 (453)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9765443
No 305
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=4.5e-16 Score=123.45 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=71.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
..++|||+|||+.+|+++|+++|+.||.|..|.|+++ +.++|||||+|.+.++|.+||..|| ..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4579999999999999999999999999999999875 4559999999999999999999988 89999999999996
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
..
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 306
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=118.31 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=65.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCC-cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC--CccCCeEEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGE-IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH--KNFEGHILNCQR 322 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~--~~l~g~~l~v~~ 322 (453)
..++|||+|||+.+|+++|+++|++||. |..+.+ . ++|||||+|.+.++|.+||..|| ..|+|+.|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-L------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-E------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-c------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4569999999999999999999999999 555555 2 38999999999999999999887 579999999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97654
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=121.64 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=68.5
Q ss_pred ccccEEEE--ecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc-----CCe
Q 012923 245 YTQRKIFV--SNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF-----EGH 316 (453)
Q Consensus 245 ~~~~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l-----~g~ 316 (453)
.++++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|| ..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 669999999999999999999999988653 7999999999999999999999 766 689
Q ss_pred EEEEEEccCCC
Q 012923 317 ILNCQRAIDGP 327 (453)
Q Consensus 317 ~l~v~~a~~~~ 327 (453)
+|.|.++...+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999997544
No 308
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=7.7e-16 Score=133.36 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=73.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEeccc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASI 208 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~ 208 (453)
.++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||..++..|.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999987 69999999999999999999999998899999999998753
No 309
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=1.8e-15 Score=131.09 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=74.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccC
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAID 325 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~ 325 (453)
..++|||+|||+.+|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+||..++..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 34699999999999999999999999999999999986 58999999999999999999999988889999999999865
Q ss_pred C
Q 012923 326 G 326 (453)
Q Consensus 326 ~ 326 (453)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 310
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-16 Score=119.25 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCCcCeEEE--cCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c-----C
Q 012923 126 EDPVHRKIFV--HGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I-----G 197 (453)
Q Consensus 126 ~~~~~~~lfV--~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~-----~ 197 (453)
....+++||| +||++++|+++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|++. | .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445789999 77999999999999999999999998764 3789999999999999999999854 5 5
Q ss_pred CeEeEEEecccCCCC
Q 012923 198 NRMTACQLASIGPAT 212 (453)
Q Consensus 198 gr~~~v~~~~~~~~~ 212 (453)
++.|.|.++...+..
T Consensus 95 g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 95 KITLYLNFVEKVQWS 109 (114)
T ss_dssp EEECEEEEESCCCCS
T ss_pred CcEEEEEecccCccc
Confidence 899999998754443
No 311
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=4e-16 Score=123.46 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=64.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeE-----EE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI-----LN 319 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~-----l~ 319 (453)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|| ..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3479999999999999999999999999999999765 899999999999999999999 8899988 66
Q ss_pred EEEccC
Q 012923 320 CQRAID 325 (453)
Q Consensus 320 v~~a~~ 325 (453)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666543
No 312
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=116.91 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=65.3
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEccCC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRAIDG 326 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a~~~ 326 (453)
.++|||+|||+.+|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+|+.. ...+.|++|.|.++.++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 469999999999999999999999999999999865 599999999999999865433 35679999999998655
Q ss_pred C
Q 012923 327 P 327 (453)
Q Consensus 327 ~ 327 (453)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 313
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-15 Score=116.00 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=68.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhcc--CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQY--GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~--G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
....++|||+|||+++|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 999999865 5699999999999999999877 4599999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99875543
No 314
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=115.55 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=66.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|.+||.|..| +.++.+++ ||||+|.+.++|.+||. ++ ..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 55555655 99999999999999999 66 5699999999987
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6443
No 315
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.6e-16 Score=118.98 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=68.1
Q ss_pred CCCCcCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 126 EDPVHRKIFVHGLGW-DTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~-~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
..+..++|||+|||+ ++|+++|+++|++||.|..|+|. +|||||+|.+.++|.+|+..++ ..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 6899999999999999999877 5589999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99975544
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=117.25 Aligned_cols=78 Identities=13% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC--ccCCeEeEE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGE-IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK--KIGNRMTAC 203 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~-i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~--~~~gr~~~v 203 (453)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.+++ .|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 455689999999999999999999999999 6666552 578999999999999999998875 599999999
Q ss_pred EecccCCC
Q 012923 204 QLASIGPA 211 (453)
Q Consensus 204 ~~~~~~~~ 211 (453)
.++.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99975543
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=121.56 Aligned_cols=77 Identities=16% Similarity=0.400 Sum_probs=68.8
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCC---CCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKAT---GKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQR 322 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~---g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~ 322 (453)
..++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||..++ .|+|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEecc
Confidence 347999999999999999999999999999 888888877 7999999999999999999999984 47888887765
Q ss_pred cc
Q 012923 323 AI 324 (453)
Q Consensus 323 a~ 324 (453)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 318
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.3e-15 Score=133.05 Aligned_cols=84 Identities=21% Similarity=0.433 Sum_probs=76.8
Q ss_pred cccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEEEEc
Q 012923 244 EYTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNCQRA 323 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v~~a 323 (453)
....++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+||...+..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34557999999999999999999999999999999999999999999999999999999999999558899999999998
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 6543
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=1.4e-15 Score=119.56 Aligned_cols=76 Identities=20% Similarity=0.455 Sum_probs=68.3
Q ss_pred CCCCcCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 126 EDPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~-~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
.....++|||+|||++ +|+++|+++|++||.|..|+| ++|||||+|.+.++|.+||+.++ ..|.|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999998 57899999999999999998877 5699999999
Q ss_pred EecccC
Q 012923 204 QLASIG 209 (453)
Q Consensus 204 ~~~~~~ 209 (453)
.++...
T Consensus 95 ~~a~~~ 100 (110)
T 1wf1_A 95 NMAGEP 100 (110)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998643
No 320
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=116.26 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=66.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLAS 207 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~ 207 (453)
..+++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|++|+.. ...+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999865 789999999999999875443 234689999999886
Q ss_pred cCCC
Q 012923 208 IGPA 211 (453)
Q Consensus 208 ~~~~ 211 (453)
....
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 321
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.4e-15 Score=125.55 Aligned_cols=77 Identities=18% Similarity=0.084 Sum_probs=69.1
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a 323 (453)
..+|||+||++.+|+++|+++|++||.|.+|+|+.+ +++|||||+|.+.++|.+|+..|| ..|.| ++|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 358999999999999999999999999999999754 258999999999999999999999 88855 99999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
+.+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 322
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=8.9e-16 Score=127.88 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=72.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEE
Q 012923 125 DEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTAC 203 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v 203 (453)
......++|||+|||+++|+++|+++|++||.|..|+|+++ ++|||||+|.+.++|.+||..++ ..|.|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999886 58999999999999999999877 5699999999
Q ss_pred EecccC
Q 012923 204 QLASIG 209 (453)
Q Consensus 204 ~~~~~~ 209 (453)
.++...
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998643
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1e-15 Score=114.95 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=67.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~~~ 207 (453)
..++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.+++ .+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 6789999999999999999998885 5999999999986
Q ss_pred cC
Q 012923 208 IG 209 (453)
Q Consensus 208 ~~ 209 (453)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 324
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.5e-15 Score=128.94 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=75.9
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|+..++ ..|.|++|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 3699999999999999999999999999999999999899999999999999999999999888 889999999999864
Q ss_pred C
Q 012923 326 G 326 (453)
Q Consensus 326 ~ 326 (453)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=7.9e-16 Score=115.60 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=67.6
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|+..+| ..|.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4689999999999999999999999 99999985 459999999999999999999999 889999999999855
Q ss_pred C
Q 012923 326 G 326 (453)
Q Consensus 326 ~ 326 (453)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 326
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.8e-16 Score=117.50 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=69.5
Q ss_pred cccEEEEecCCCCccHHHHHHHHhccCCcceee-eeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGP-LGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
..++|||+|||+.+|+++|+++|+.||.|..|+ |++++.+ +.|||+|.+.++|.+||..|| ..|.|++|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 357999999999999999999999999999994 8877654 349999999999999999999 8999999999999
Q ss_pred cCC
Q 012923 324 IDG 326 (453)
Q Consensus 324 ~~~ 326 (453)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 327
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=1.4e-15 Score=129.36 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=75.9
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEccC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAID 325 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~~ 325 (453)
.++|||+|||+.+|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|++|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 4699999999999999999999999999999999999899999999999999999999999888 889999999999865
Q ss_pred C
Q 012923 326 G 326 (453)
Q Consensus 326 ~ 326 (453)
.
T Consensus 83 ~ 83 (168)
T 1b7f_A 83 G 83 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=130.00 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEE--EEccc---CCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeE
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC--KAVCD---KVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM 200 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v--~i~~d---~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~ 200 (453)
...+++|||+|||+++|+++|+++|++||.|..| +++.+ ..+++++|||||+|.+.++|.+||..++ ..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4556899999999999999999999999998875 12222 2378999999999999999999999887 5599999
Q ss_pred eEEEecccC
Q 012923 201 TACQLASIG 209 (453)
Q Consensus 201 ~~v~~~~~~ 209 (453)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=110.01 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=63.7
Q ss_pred EEEEecCCCCccHHH----HHHHHhcc-CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEE
Q 012923 249 KIFVSNVGSELEPQK----LLAFFSKY-GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQR 322 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~----l~~~F~~~-G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~ 322 (453)
+|||+|||+.+++++ |+++|++| |.|.+| ++ |||||.|.+.++|.+|++.|+ ..|.||+|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 499999999999988 55899999 599988 33 999999999999999999999 999999999999
Q ss_pred ccCCCCC
Q 012923 323 AIDGPKP 329 (453)
Q Consensus 323 a~~~~~~ 329 (453)
|..+..-
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876544
No 330
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.5e-15 Score=116.12 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=71.1
Q ss_pred cccEEEEecCCC-----CccHHHHHHHHhccCCcceeeeeccCCC-CCCceEEEEEECCHHHHHHHHHcCC-CccCCeEE
Q 012923 246 TQRKIFVSNVGS-----ELEPQKLLAFFSKYGEIEEGPLGIDKAT-GKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (453)
Q Consensus 246 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~i~~v~i~~d~~~-g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l 318 (453)
.+++|+|+||.. ..++++|+++|++||.|.+|.|++++.+ ++++|||||+|.+.++|.+|+..|| ..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 457999999963 2378999999999999999999998754 6899999999999999999999999 89999999
Q ss_pred EEEEccC
Q 012923 319 NCQRAID 325 (453)
Q Consensus 319 ~v~~a~~ 325 (453)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 331
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=2.2e-15 Score=119.79 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=68.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceE-EEEEECCHHHHHHHHHcCC-CccCC--eEEEEEEc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQRA 323 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~a 323 (453)
.+|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|.+|+..|| ..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 588999999999999999999999999999987642 788 9999999999999999999 88888 89999999
Q ss_pred cCCC
Q 012923 324 IDGP 327 (453)
Q Consensus 324 ~~~~ 327 (453)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7653
No 332
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-15 Score=112.67 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=68.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~v~~ 205 (453)
....++|||+|| ++|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+||..++. .|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 99999999999999999999984 5789999999999999999998884 59999999999
Q ss_pred cccCCC
Q 012923 206 ASIGPA 211 (453)
Q Consensus 206 ~~~~~~ 211 (453)
+.....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 876544
No 333
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2e-14 Score=133.15 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=73.3
Q ss_pred ccccEEEEecCCCCccHHHHH----HHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEE
Q 012923 245 YTQRKIFVSNVGSELEPQKLL----AFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILN 319 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~ 319 (453)
...++|||+|||+.+|+++|+ ++|+.||.|..|+|++ +++++|||||+|.+.++|.+||..|| ..|.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 346799999999999999977 8999999999999875 78899999999999999999999999 889999999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
|.|+....
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99996654
No 334
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=115.01 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEE-EEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDC-KAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v-~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
...++|||+|||+++|+++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446899999999999999999999999999999 488876443 49999999999999999877 569999999999
Q ss_pred cccC
Q 012923 206 ASIG 209 (453)
Q Consensus 206 ~~~~ 209 (453)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8754
No 335
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.8e-15 Score=128.54 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=74.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEEEecccC
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTACQLASIG 209 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v~~~~~~ 209 (453)
.++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++..+..+.|+.|.|.++..+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 56899999999999999999999999999999999988999999999999999999999994336699999999998643
No 336
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.2e-15 Score=126.07 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=76.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|||.++|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999877 56999999999
Q ss_pred ecc
Q 012923 205 LAS 207 (453)
Q Consensus 205 ~~~ 207 (453)
++.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 974
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.9e-15 Score=112.34 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=64.7
Q ss_pred cccEEEEecCCCCccHHHHHHHHhcc----C-------CcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKY----G-------EIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l 313 (453)
..++|||+|||+.+|+++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|| .+| ..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 34799999999999999999999999 8 8999998765 899999999999999999 888 889
Q ss_pred CCeEEEEEE
Q 012923 314 EGHILNCQR 322 (453)
Q Consensus 314 ~g~~l~v~~ 322 (453)
+|+.|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 338
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=4.3e-15 Score=131.87 Aligned_cols=85 Identities=22% Similarity=0.442 Sum_probs=78.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345899999999999999999999999999999999999899999999999999999999999877 5699999999999
Q ss_pred ccCCCC
Q 012923 207 SIGPAT 212 (453)
Q Consensus 207 ~~~~~~ 212 (453)
...+..
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 765443
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.5e-15 Score=111.86 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=64.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-Cc
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQY----G-------EIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KK 195 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~----G-------~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~ 195 (453)
...++|||+|||+++|+++|+++|++| | .|..|++.++ +|||||+|.+.++|.+|+ .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999998764 789999999999999999 777 56
Q ss_pred cCCeEeEEEe
Q 012923 196 IGNRMTACQL 205 (453)
Q Consensus 196 ~~gr~~~v~~ 205 (453)
|.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=3.1e-15 Score=127.78 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=75.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999998899999999999999999999999877 5699999999987
Q ss_pred c
Q 012923 207 S 207 (453)
Q Consensus 207 ~ 207 (453)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 341
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.8e-15 Score=115.88 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=66.7
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceE-EEEEECCHHHHHHHHHcCC-CccCC--eEEEEEE
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGF-CLFVYKTVDAAKKALEEPH-KNFEG--HILNCQR 322 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~-afV~F~~~~~A~~Al~~~~-~~l~g--~~l~v~~ 322 (453)
...|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|+..|| ..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 346789999999999999999999999999999752 386 9999999999999999999 88887 6999999
Q ss_pred ccCCC
Q 012923 323 AIDGP 327 (453)
Q Consensus 323 a~~~~ 327 (453)
+..+.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 97654
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=107.97 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=63.2
Q ss_pred cCe-EEEcCCCCCCCHHH----HHHHHhcc-CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEeE
Q 012923 130 HRK-IFVHGLGWDTKAET----LIDAFKQY-GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMTA 202 (453)
Q Consensus 130 ~~~-lfV~nLp~~~te~~----l~~~f~~~-G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~~ 202 (453)
+.| |||+|||+++++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|++ .|.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999988 55899999 599998 33 9999999999999999998885 59999999
Q ss_pred EEecccCCCC
Q 012923 203 CQLASIGPAT 212 (453)
Q Consensus 203 v~~~~~~~~~ 212 (453)
|.++......
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999765543
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.1e-15 Score=119.30 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=63.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeE-----eE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRM-----TA 202 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~-----~~ 202 (453)
..++|||+|||+++|+++|+++|.+||.|..|+|+.+ |||||+|.+.++|.+||+.|+ ..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3579999999999999999999999999999999876 899999999999999999887 5588988 66
Q ss_pred EEecc
Q 012923 203 CQLAS 207 (453)
Q Consensus 203 v~~~~ 207 (453)
|....
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65554
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=7e-15 Score=121.37 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=68.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCC--eEeEEEec
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGN--RMTACQLA 206 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~g--r~~~v~~~ 206 (453)
-.+|||+||++.+|+++|+++|++||.|..|+|+.+ .++|||||+|.+.++|.+|++.|++. |.+ +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457999999999999999999999999999998653 36799999999999999999999854 755 99999998
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.3e-14 Score=112.14 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCcCeEEEcCCCC-----CCCHHHHHHHHhccCCeeEEEEcccCCC-CCcceEEEEEEccHHHHHHHHHcCCC-ccCCeE
Q 012923 128 PVHRKIFVHGLGW-----DTKAETLIDAFKQYGEIEDCKAVCDKVS-GKSKGYGFILFKTRSGARKALKEPQK-KIGNRM 200 (453)
Q Consensus 128 ~~~~~lfV~nLp~-----~~te~~l~~~f~~~G~i~~v~i~~d~~~-g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~ 200 (453)
..+++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..|++ .+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3468999999963 3378999999999999999999998754 68999999999999999999999884 599999
Q ss_pred eEEEecc
Q 012923 201 TACQLAS 207 (453)
Q Consensus 201 ~~v~~~~ 207 (453)
|.|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999985
No 346
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=9.8e-15 Score=127.68 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=77.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEec
Q 012923 128 PVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQLA 206 (453)
Q Consensus 128 ~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~~ 206 (453)
...++|||+|||+++|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998899999999999999999999999877 5699999999998
Q ss_pred ccCC
Q 012923 207 SIGP 210 (453)
Q Consensus 207 ~~~~ 210 (453)
....
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=7.2e-15 Score=117.02 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=68.5
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|| .+|+++|+++|++||.|..|.|. +++|||||+|.+.++|.+||..|| ..|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34679999996 69999999999999999999986 358999999999999999999998 8899999999999
Q ss_pred cCCCC
Q 012923 324 IDGPK 328 (453)
Q Consensus 324 ~~~~~ 328 (453)
..++.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 348
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.4e-14 Score=115.09 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=67.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceE-EEEEEccHHHHHHHHHcCCCc-cCC--eEeEEEec
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQKK-IGN--RMTACQLA 206 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~-afV~f~~~~~a~~A~~~~~~~-~~g--r~~~v~~~ 206 (453)
-+|||+||++.+|+++|+++|++||.|.+|+|+.+ ++|| |||+|.+.++|.+|++.|++. |.+ +.|+|.++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 47889999999999999999999999999988764 3688 999999999999999999954 777 89999998
Q ss_pred ccCCC
Q 012923 207 SIGPA 211 (453)
Q Consensus 207 ~~~~~ 211 (453)
.....
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 75543
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=4.5e-15 Score=131.11 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=69.1
Q ss_pred ccccEEEEecCCCCc---------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc-
Q 012923 245 YTQRKIFVSNVGSEL---------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF- 313 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l- 313 (453)
...++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|..|+..|+ ..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 356799999999998 89999999999999999999864 8999999999999999999999 778
Q ss_pred -----------CCeEEEEEEccCCCCCCC
Q 012923 314 -----------EGHILNCQRAIDGPKPGK 331 (453)
Q Consensus 314 -----------~g~~l~v~~a~~~~~~~~ 331 (453)
.|+.|.|.||...+.+..
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-------
T ss_pred ccccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999988765543
No 350
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=8.1e-15 Score=128.38 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=69.9
Q ss_pred ccEEEEecCC-CCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVG-SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.++|||+||| +.+|+++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||..|| ..|.|++|+|.++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4699999999 899999999999999999999998763 8999999999999999999999 89999999999986
Q ss_pred CC
Q 012923 325 DG 326 (453)
Q Consensus 325 ~~ 326 (453)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 351
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2e-14 Score=122.94 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=72.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccC---CeEe
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG---NRMT 201 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~---gr~~ 201 (453)
.....++|||+|||+++|+++|+++|++||.|..|+|+++. +++++|||||+|.+.++|.+|++.+++ .+. ++.|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999997 699999999999999999999999885 354 4999
Q ss_pred EEEec
Q 012923 202 ACQLA 206 (453)
Q Consensus 202 ~v~~~ 206 (453)
.|.++
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=2e-14 Score=114.39 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=68.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEE
Q 012923 126 EDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQ 204 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~ 204 (453)
.....++|||+|| ++|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 79999999999999999999985 578999999999999999998877 56999999999
Q ss_pred ecccCCC
Q 012923 205 LASIGPA 211 (453)
Q Consensus 205 ~~~~~~~ 211 (453)
++.....
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9875543
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.9e-14 Score=109.07 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=68.0
Q ss_pred cccccEEEEecCCCCcc-----------HHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-C
Q 012923 244 EYTQRKIFVSNVGSELE-----------PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-K 311 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~ 311 (453)
...+++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+||..|| .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567999999954432 6899999999999999966 543 379999999999999999999999 8
Q ss_pred ccCCeEEEEEEccCCC
Q 012923 312 NFEGHILNCQRAIDGP 327 (453)
Q Consensus 312 ~l~g~~l~v~~a~~~~ 327 (453)
.|+|++|.|.++..+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 8999999999996654
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=5.7e-14 Score=111.22 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceE-EEEEEccHHHHHHHHHcCCC-ccCC--eEeEEEecc
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGY-GFILFKTRSGARKALKEPQK-KIGN--RMTACQLAS 207 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~-afV~f~~~~~a~~A~~~~~~-~~~g--r~~~v~~~~ 207 (453)
.|||+||++.+|+++|+++|++||.|..|+|+. + .|| |||+|.+.++|..|++.|++ .|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 468999999999999999999999999999865 2 286 99999999999999999885 4776 689999987
Q ss_pred cCC
Q 012923 208 IGP 210 (453)
Q Consensus 208 ~~~ 210 (453)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 554
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.1e-14 Score=126.82 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCCCcCeEEEcCCCCCC---------CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-c
Q 012923 126 EDPVHRKIFVHGLGWDT---------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-K 195 (453)
Q Consensus 126 ~~~~~~~lfV~nLp~~~---------te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~ 195 (453)
.....++|||+||+..+ |+++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|++ .
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35567999999999998 7999999999999999999985 479999999999999999998884 4
Q ss_pred c------------CCeEeEEEecccCCC
Q 012923 196 I------------GNRMTACQLASIGPA 211 (453)
Q Consensus 196 ~------------~gr~~~v~~~~~~~~ 211 (453)
| .|+.|.|.|+...+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 6 799999999986544
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=3.7e-14 Score=109.60 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=69.1
Q ss_pred cccEEEEecCC--CCc--------cHHHHHHHHhccCCcceeeeeccCCC--CCCceEEEEEECCHHHHHHHHHcCC-Cc
Q 012923 246 TQRKIFVSNVG--SEL--------EPQKLLAFFSKYGEIEEGPLGIDKAT--GKPKGFCLFVYKTVDAAKKALEEPH-KN 312 (453)
Q Consensus 246 ~~~~l~V~nLp--~~~--------t~~~l~~~F~~~G~i~~v~i~~d~~~--g~~kg~afV~F~~~~~A~~Al~~~~-~~ 312 (453)
++++|+|.|+- ..+ .+++|++.|++||.|.+|.|++++.+ ++++||+||+|.+.++|.+|+..|| ..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45799999983 223 34799999999999999999998755 4689999999999999999999999 89
Q ss_pred cCCeEEEEEEcc
Q 012923 313 FEGHILNCQRAI 324 (453)
Q Consensus 313 l~g~~l~v~~a~ 324 (453)
|+||+|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999974
No 357
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=7.9e-14 Score=119.33 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=69.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeEEEe
Q 012923 127 DPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTACQL 205 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~v~~ 205 (453)
....++|||+|||+++|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999988766 4488999999999999999999999888 569999999999
Q ss_pred cccC
Q 012923 206 ASIG 209 (453)
Q Consensus 206 ~~~~ 209 (453)
+..+
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8654
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=8.4e-14 Score=109.64 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=69.7
Q ss_pred cccEEEEecCCCC-----ccHHHHHHHHhccCCcceeeeeccCC----CCCCceEEEEEECCHHHHHHHHHcCC-CccCC
Q 012923 246 TQRKIFVSNVGSE-----LEPQKLLAFFSKYGEIEEGPLGIDKA----TGKPKGFCLFVYKTVDAAKKALEEPH-KNFEG 315 (453)
Q Consensus 246 ~~~~l~V~nLp~~-----~t~~~l~~~F~~~G~i~~v~i~~d~~----~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g 315 (453)
++++|+|.||-.. -.+++|++.|++||.|.+|.|++++. +++++||+||+|.+.++|.+|+..|| ..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5679999999422 24689999999999999999999864 46788999999999999999999999 99999
Q ss_pred eEEEEEEcc
Q 012923 316 HILNCQRAI 324 (453)
Q Consensus 316 ~~l~v~~a~ 324 (453)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999974
No 359
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=1.1e-13 Score=123.72 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.9
Q ss_pred cccccEEEEecCCC-CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEE
Q 012923 244 EYTQRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQ 321 (453)
Q Consensus 244 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~ 321 (453)
....++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+||..++ ..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999 99999999999999999999999875 8999999999999999999888 88999999999
Q ss_pred EccCC
Q 012923 322 RAIDG 326 (453)
Q Consensus 322 ~a~~~ 326 (453)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99755
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.1e-13 Score=105.54 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCCCCcCeEEEcCCCCCCC-----------HHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 125 DEDPVHRKIFVHGLGWDTK-----------AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~~t-----------e~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
.....+++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3455689999999944332 6899999999999999965 554 389999999999999999999888
Q ss_pred -CccCCeEeEEEecccCC
Q 012923 194 -KKIGNRMTACQLASIGP 210 (453)
Q Consensus 194 -~~~~gr~~~v~~~~~~~ 210 (453)
..|.||.|.|.++....
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 45999999999986543
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.1e-14 Score=109.23 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=62.6
Q ss_pred EecCCCCccHHHHHHHH------------hccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEE
Q 012923 252 VSNVGSELEPQKLLAFF------------SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHIL 318 (453)
Q Consensus 252 V~nLp~~~t~~~l~~~F------------~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l 318 (453)
+.||++.+++++|++.| ++||.|.+|.|+++. +++++|||||+|.+.++|.+|+..|| ..|+||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777887777666 999999999999876 47899999999999999999999999 89999999
Q ss_pred EEEEc
Q 012923 319 NCQRA 323 (453)
Q Consensus 319 ~v~~a 323 (453)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-12 Score=99.47 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=63.8
Q ss_pred ccEEEEecCC-------CCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEE
Q 012923 247 QRKIFVSNVG-------SELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILN 319 (453)
Q Consensus 247 ~~~l~V~nLp-------~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~ 319 (453)
.++|.|.-.. ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|.+||..++. +.+++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEE
Confidence 3477776544 458999999999999999999997 36799999999999999999999654 6799999
Q ss_pred EEEccCCC
Q 012923 320 CQRAIDGP 327 (453)
Q Consensus 320 v~~a~~~~ 327 (453)
|.|+..++
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987655
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.6e-13 Score=103.99 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=68.6
Q ss_pred CcCeEEEcCC--CCCCC--------HHHHHHHHhccCCeeEEEEcccCCC--CCcceEEEEEEccHHHHHHHHHcCCC-c
Q 012923 129 VHRKIFVHGL--GWDTK--------AETLIDAFKQYGEIEDCKAVCDKVS--GKSKGYGFILFKTRSGARKALKEPQK-K 195 (453)
Q Consensus 129 ~~~~lfV~nL--p~~~t--------e~~l~~~f~~~G~i~~v~i~~d~~~--g~~~G~afV~f~~~~~a~~A~~~~~~-~ 195 (453)
.++.|.|.|+ |.++. +++|++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|+..||+ .
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4689999998 44443 4699999999999999999998754 46899999999999999999999995 5
Q ss_pred cCCeEeEEEecc
Q 012923 196 IGNRMTACQLAS 207 (453)
Q Consensus 196 ~~gr~~~v~~~~ 207 (453)
+.||.|.|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999875
No 364
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=120.08 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=70.6
Q ss_pred ccEEEEecCCC-CccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEcc
Q 012923 247 QRKIFVSNVGS-ELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRAI 324 (453)
Q Consensus 247 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a~ 324 (453)
.++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+||..++ ..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46999999999 99999999999999999999999875 8899999999999999999888 88999999999987
Q ss_pred CCC
Q 012923 325 DGP 327 (453)
Q Consensus 325 ~~~ 327 (453)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 553
No 365
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=4.3e-13 Score=122.48 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=69.4
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v~~a 323 (453)
...++|||+|||+.+|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+||..++ ..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 44579999999999999999999999999999999764 8999999999999999999888 8899999999998
Q ss_pred cC
Q 012923 324 ID 325 (453)
Q Consensus 324 ~~ 325 (453)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.1e-12 Score=97.35 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=65.6
Q ss_pred CcCeEEEcCCC-------CCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEe
Q 012923 129 VHRKIFVHGLG-------WDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMT 201 (453)
Q Consensus 129 ~~~~lfV~nLp-------~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~ 201 (453)
...+|.|.... .++|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|..||+.++. +.++.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeE
Confidence 35678888765 458999999999999999999987 36899999999999999999998544 679999
Q ss_pred EEEecccCCC
Q 012923 202 ACQLASIGPA 211 (453)
Q Consensus 202 ~v~~~~~~~~ 211 (453)
.|.++...+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999875543
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.3e-13 Score=106.41 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=61.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccCCeEe
Q 012923 135 VHGLGWDTKAETLIDAF------------KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIGNRMT 201 (453)
Q Consensus 135 V~nLp~~~te~~l~~~f------------~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr~~ 201 (453)
+.|||+.+++++|+++| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|+..+++ .+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777776666 999999999999987 589999999999999999999998884 5999999
Q ss_pred EEEec
Q 012923 202 ACQLA 206 (453)
Q Consensus 202 ~v~~~ 206 (453)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=6.1e-13 Score=104.67 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=68.7
Q ss_pred CcCeEEEcCCC--CCC---CHHHHHHHHhccCCeeEEEEcccCC----CCCcceEEEEEEccHHHHHHHHHcCCC-ccCC
Q 012923 129 VHRKIFVHGLG--WDT---KAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQK-KIGN 198 (453)
Q Consensus 129 ~~~~lfV~nLp--~~~---te~~l~~~f~~~G~i~~v~i~~d~~----~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~g 198 (453)
.+++|+|+|+- .++ .++||++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|+..||+ .+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46899999994 222 3789999999999999999999864 357889999999999999999999994 5999
Q ss_pred eEeEEEecc
Q 012923 199 RMTACQLAS 207 (453)
Q Consensus 199 r~~~v~~~~ 207 (453)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=3.5e-12 Score=99.55 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=65.5
Q ss_pred ccccEEEEecCCCCc----------cHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc
Q 012923 245 YTQRKIFVSNVGSEL----------EPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l 313 (453)
..+++|.|.||-... .+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+..|| ..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 356799999984322 246889999999999999997763 49999999999999999999999 899
Q ss_pred CCeEEEEEEcc
Q 012923 314 EGHILNCQRAI 324 (453)
Q Consensus 314 ~g~~l~v~~a~ 324 (453)
+||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999984
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.3e-11 Score=115.06 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=64.0
Q ss_pred cCCCCCcCeEEEcC--CCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-c---C
Q 012923 124 ADEDPVHRKIFVHG--LGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-I---G 197 (453)
Q Consensus 124 ~~~~~~~~~lfV~n--Lp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~---~ 197 (453)
.-.+..+++|||+| |++.+|+++|+++|++||.|..|++.. +||||||+|.+.++|++|++.||+. + .
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34456678999999 579999999999999999999987653 5799999999999999999999954 3 3
Q ss_pred Ce--EeEEEec
Q 012923 198 NR--MTACQLA 206 (453)
Q Consensus 198 gr--~~~v~~~ 206 (453)
|+ .|.|.++
T Consensus 86 g~~~~ly~~~~ 96 (345)
T 3tht_A 86 GQKITLYLNFV 96 (345)
T ss_dssp SCEEECEEEEC
T ss_pred CCceEEEEEEe
Confidence 55 4666665
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=9.8e-12 Score=115.88 Aligned_cols=75 Identities=21% Similarity=0.349 Sum_probs=63.9
Q ss_pred cccccEEEEec--CCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc---CCe-
Q 012923 244 EYTQRKIFVSN--VGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF---EGH- 316 (453)
Q Consensus 244 ~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l---~g~- 316 (453)
..++++|||+| |++.+|+++|+++|++||.|.+|.+++ +||||||+|.+.++|.+||+.|| ..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44567999999 588999999999999999999988864 38999999999999999999999 555 355
Q ss_pred -EEEEEEcc
Q 012923 317 -ILNCQRAI 324 (453)
Q Consensus 317 -~l~v~~a~ 324 (453)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67777774
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=9.9e-11 Score=91.32 Aligned_cols=75 Identities=8% Similarity=0.086 Sum_probs=63.7
Q ss_pred CcCeEEEcCCCCCC----------CHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC-ccC
Q 012923 129 VHRKIFVHGLGWDT----------KAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK-KIG 197 (453)
Q Consensus 129 ~~~~lfV~nLp~~~----------te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~ 197 (453)
.++.|.|.|+=... .+++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..||+ .+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999984222 245889999999999999987763 589999999999999999999885 599
Q ss_pred CeEeEEEecc
Q 012923 198 NRMTACQLAS 207 (453)
Q Consensus 198 gr~~~v~~~~ 207 (453)
||.|.|.++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.4e-10 Score=90.44 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=66.7
Q ss_pred ccccccEEEEecCCCC-ccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECC-HHHHHHHHHcCC---CccCCeE
Q 012923 243 SEYTQRKIFVSNVGSE-LEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKT-VDAAKKALEEPH---KNFEGHI 317 (453)
Q Consensus 243 ~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~-~~~A~~Al~~~~---~~l~g~~ 317 (453)
.....+.|||+||++. ++.++|+++|+.||.|.+|.++++.. .|||+|.+ ..+|..|+..+| ..|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3445679999999999 99999999999999999999998853 59999999 899999999985 6889988
Q ss_pred EEEEEcc
Q 012923 318 LNCQRAI 324 (453)
Q Consensus 318 l~v~~a~ 324 (453)
+.+....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887653
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2e-10 Score=83.48 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred cccEEEEecCC----CCccH----HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCe
Q 012923 246 TQRKIFVSNVG----SELEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGH 316 (453)
Q Consensus 246 ~~~~l~V~nLp----~~~t~----~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~ 316 (453)
+..||+|..++ ..+.. .+|.+.|++||.|..++|+.++ +||+|.+.++|.+||. || ..|+||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34588888776 23433 6788999999999999999873 8999999999999999 88 899999
Q ss_pred EEEEEEccCC
Q 012923 317 ILNCQRAIDG 326 (453)
Q Consensus 317 ~l~v~~a~~~ 326 (453)
.|+|+++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2e-10 Score=89.54 Aligned_cols=75 Identities=24% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEcc-HHHHHHHHHcCC---CccCCeEe
Q 012923 127 DPVHRKIFVHGLGWD-TKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKT-RSGARKALKEPQ---KKIGNRMT 201 (453)
Q Consensus 127 ~~~~~~lfV~nLp~~-~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~-~~~a~~A~~~~~---~~~~gr~~ 201 (453)
-+..+.|||+||+.+ ++.++|+++|++||.|..|.++++.. .|||.|.+ ..+|..|+..++ ..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356789999999999 99999999999999999999998874 59999999 899999999885 45888888
Q ss_pred EEEecc
Q 012923 202 ACQLAS 207 (453)
Q Consensus 202 ~v~~~~ 207 (453)
.+.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 877654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-09 Score=79.00 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCcCeEEEcCCC----CCCCH----HHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCe
Q 012923 128 PVHRKIFVHGLG----WDTKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNR 199 (453)
Q Consensus 128 ~~~~~lfV~nLp----~~~te----~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr 199 (453)
+..-||+|.-++ .++-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+|+++....+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 455689998877 33434 5789999999999999999986 8999999999999999444669999
Q ss_pred EeEEEecccC
Q 012923 200 MTACQLASIG 209 (453)
Q Consensus 200 ~~~v~~~~~~ 209 (453)
.|+|.++...
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998643
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=7.2e-10 Score=80.91 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=61.0
Q ss_pred cccccEEEEecCCCC-----ccH----HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-Ccc
Q 012923 244 EYTQRKIFVSNVGSE-----LEP----QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNF 313 (453)
Q Consensus 244 ~~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l 313 (453)
.++..||+|..++.. +.. .+|.+.|.+||.|..++|+.|+ +||+|.+.++|.+||. |+ ..|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 344569999988743 322 5688999999999999999883 9999999999999999 88 999
Q ss_pred CCeEEEEEEcc
Q 012923 314 EGHILNCQRAI 324 (453)
Q Consensus 314 ~g~~l~v~~a~ 324 (453)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998864
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=1.1e-08 Score=90.76 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=65.6
Q ss_pred cEEEEecCC-----CCccHHHHHHHHhccCCcceeeeeccC----CCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeE
Q 012923 248 RKIFVSNVG-----SELEPQKLLAFFSKYGEIEEGPLGIDK----ATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHI 317 (453)
Q Consensus 248 ~~l~V~nLp-----~~~t~~~l~~~F~~~G~i~~v~i~~d~----~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~ 317 (453)
..+.+.|+- ..-.+++|++.|++||.|.+|.|+++. .+++++|++||+|.+.++|.+|+..|| ..|+||+
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 456666653 334678999999999999999998554 455899999999999999999999999 9999999
Q ss_pred EEEEEcc
Q 012923 318 LNCQRAI 324 (453)
Q Consensus 318 l~v~~a~ 324 (453)
|.|.+..
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4.7e-09 Score=76.62 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCCCCcCeEEEcCCCCC-----CCH----HHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc
Q 012923 125 DEDPVHRKIFVHGLGWD-----TKA----ETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 125 ~~~~~~~~lfV~nLp~~-----~te----~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
.--+..-||+|.-++.+ +-. .+|.+.|.+||+|..++|+.|+ +||+|.+.++|.+||++....
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCee
Confidence 34566779999988743 333 4688999999999999999986 999999999999999944467
Q ss_pred cCCeEeEEEecc
Q 012923 196 IGNRMTACQLAS 207 (453)
Q Consensus 196 ~~gr~~~v~~~~ 207 (453)
+.||.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=5.8e-08 Score=85.95 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=63.9
Q ss_pred cCeEEEcCCC-----CCCCHHHHHHHHhccCCeeEEEEcccCC----CCCcceEEEEEEccHHHHHHHHHcCCC-ccCCe
Q 012923 130 HRKIFVHGLG-----WDTKAETLIDAFKQYGEIEDCKAVCDKV----SGKSKGYGFILFKTRSGARKALKEPQK-KIGNR 199 (453)
Q Consensus 130 ~~~lfV~nLp-----~~~te~~l~~~f~~~G~i~~v~i~~d~~----~g~~~G~afV~f~~~~~a~~A~~~~~~-~~~gr 199 (453)
.+.|.+.|+- .+-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|++ .+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555552 3345779999999999999999986543 458999999999999999999999995 59999
Q ss_pred EeEEEecc
Q 012923 200 MTACQLAS 207 (453)
Q Consensus 200 ~~~v~~~~ 207 (453)
.|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999875
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=4.3e-07 Score=67.51 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=65.1
Q ss_pred ccEEEEecCCCCccHHHHHHHHhcc-----CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~-----G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
.++|-|-|||..+++..|+.+++++ |.|+.|.+..|. +=|+|+|.+...|.+|...|+ ..|.||+|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4689999999999999999999999 999999999884 459999999999999999999 8999999998
Q ss_pred EEc
Q 012923 321 QRA 323 (453)
Q Consensus 321 ~~a 323 (453)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 643
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-06 Score=64.60 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=61.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhc-----cCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCCeEeEE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQ-----YGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRMTAC 203 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~-----~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~gr~~~v 203 (453)
..++|.|.|||..+.++.|.-+|+. =|+|..|.... +-|+|+|.+...|++.|+.-.+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4579999999999999999999987 25888887654 2599999999999999999888999999999
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
....
T Consensus 79 ~P~~ 82 (104)
T 2dhx_A 79 RPAP 82 (104)
T ss_dssp EECC
T ss_pred EcCC
Confidence 7754
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=1.7e-05 Score=59.02 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=63.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhcc-----CCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC-CccCCeEeE
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQY-----GEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ-KKIGNRMTA 202 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~-----G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~-~~~~gr~~~ 202 (453)
..++|-|-|||-.++..-|+.|++++ |.|+.|.+..|- +=|+|+|.+...|-+|.-.++ ..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46899999999999999999999999 999999888875 249999999999999987777 459999999
Q ss_pred EEec
Q 012923 203 CQLA 206 (453)
Q Consensus 203 v~~~ 206 (453)
|...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=6.5e-05 Score=55.52 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=63.0
Q ss_pred cccEEEEecCCCCccHHHHHHHHhcc-----CCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCCeEEEE
Q 012923 246 TQRKIFVSNVGSELEPQKLLAFFSKY-----GEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEGHILNC 320 (453)
Q Consensus 246 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g~~l~v 320 (453)
..++|.|.|||..+.++.|.-+|+.- |.|..|.... +-|+|+|.+...|.+.|+.-.+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45699999999999999999999872 6788887754 3589999999999999999888899999999
Q ss_pred EEccCCC
Q 012923 321 QRAIDGP 327 (453)
Q Consensus 321 ~~a~~~~ 327 (453)
.....+.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 8765443
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=0.00011 Score=54.61 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=61.0
Q ss_pred ccEEEEecCCCCc-c----HHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC-CccCCeEEEE
Q 012923 247 QRKIFVSNVGSEL-E----PQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH-KNFEGHILNC 320 (453)
Q Consensus 247 ~~~l~V~nLp~~~-t----~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~-~~l~g~~l~v 320 (453)
.++|+|.||+..+ + .+.++.+|..|+.+.....++.- + -..|.|.+.++|.+|...|+ ..|.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999998765 2 36778999999999988877642 2 47899999999999999999 8899999999
Q ss_pred EEcc
Q 012923 321 QRAI 324 (453)
Q Consensus 321 ~~a~ 324 (453)
-++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9986
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.54 E-value=0.00017 Score=52.62 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=44.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
.||+-++|.++...||..+|+.||-| .|+-+.|. .|||.|.+++.|..||..+
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34444999999999999999999965 55556664 6999999999999999976
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0015 Score=50.06 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=58.9
Q ss_pred ccccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCCCccCC-eEEEEEEc
Q 012923 245 YTQRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPHKNFEG-HILNCQRA 323 (453)
Q Consensus 245 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~~~l~g-~~l~v~~a 323 (453)
...+.|.|-++|... ...|...|++||.|++..... ...+-.|.|.+..+|.+||......|++ -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345689999999886 556777899999999887621 2568999999999999999997777774 77888776
Q ss_pred c
Q 012923 324 I 324 (453)
Q Consensus 324 ~ 324 (453)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.00082 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=45.7
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
+.++| ++|..+...+|.++|+.||.| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 46666 999999999999999999955 67777663 5999999999999999976
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.23 E-value=0.00095 Score=48.77 Aligned_cols=63 Identities=8% Similarity=-0.000 Sum_probs=52.4
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCC--CceEEEEEECCHHHHHHHHHcCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGK--PKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~--~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
++|.|++||+.+|++++.+.+..+..+.....+..+.+.+ .-..|||.|.+.+++..-...++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 4899999999999999999999998887777766554333 24569999999999998888877
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00044 Score=50.60 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=44.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 132 KIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 132 ~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
.++| ++|.++...||..+|+.||-| .|+-+.|. .|||.|.+++.|..||..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 56666664 69999999999999999753
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.11 E-value=0.0016 Score=47.53 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=52.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCC--cceEEEEEEccHHHHHHHHHcCCCc
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~--~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
++|.|++||+.+|++++.+.+..+..+.....+..+.+.+ .-.-|||.|.+.+++....+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999999998877666655443322 2246999999999999999988754
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0055 Score=46.86 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=57.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCccCC-eEeEEEecc
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGN-RMTACQLAS 207 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~~~g-r~~~v~~~~ 207 (453)
..+-|.|-+.|... ...|...|++||.|.+.... + ...+-.|.|.+..+|++||..+...|.+ -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 35789999999996 66788899999999988752 1 2348999999999999999998777764 566676653
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.00092 Score=48.89 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=44.7
Q ss_pred EEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 249 KIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 249 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
.++| ++|..+...+|.++|+.||.| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 5666 999999999999999999944 67777663 5999999999999999965
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0098 Score=44.15 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=59.8
Q ss_pred cCeEEEcCCCCCC-C----HHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCCc-cCCeEeEE
Q 012923 130 HRKIFVHGLGWDT-K----AETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKK-IGNRMTAC 203 (453)
Q Consensus 130 ~~~lfV~nLp~~~-t----e~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~~-~~gr~~~v 203 (453)
..+|+|.||+.++ + ...|+.+|..|+++.....++.- .=..|.|.+.++|.+|-..+++. +.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999999766 3 25778999999998887766543 13799999999999999999965 99999999
Q ss_pred Eecc
Q 012923 204 QLAS 207 (453)
Q Consensus 204 ~~~~ 207 (453)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9986
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.60 E-value=0.0084 Score=46.51 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=56.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcce-eeeeccCC--------CC-----CCceEEEEEECCHHHHHHHHHcCCCcc
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEE-GPLGIDKA--------TG-----KPKGFCLFVYKTVDAAKKALEEPHKNF 313 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~d~~--------~g-----~~kg~afV~F~~~~~A~~Al~~~~~~l 313 (453)
..|.|-+.|...+.. |.+.|++||.|.. +.+.+... .. ....+..|+|.+..+|.+||......|
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 478888997766655 5668999999987 32221100 00 125678999999999999999988889
Q ss_pred CCeEEEEEEcc
Q 012923 314 EGHILNCQRAI 324 (453)
Q Consensus 314 ~g~~l~v~~a~ 324 (453)
+|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888874
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.54 E-value=0.005 Score=45.17 Aligned_cols=64 Identities=6% Similarity=-0.021 Sum_probs=47.9
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCC--ceEEEEEECCHHHHHHHHHcCC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKP--KGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~--kg~afV~F~~~~~A~~Al~~~~ 310 (453)
..+|.||.||+.+|++++.+.++.+-.+.....+....+-+. -..|||.|.+.++...-....+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 358999999999999999888887655554444433322221 3459999999999999998877
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.21 E-value=0.0088 Score=46.40 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCC---------CC-----CcceEEEEEEccHHHHHHHHHcCCCcc
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKV---------SG-----KSKGYGFILFKTRSGARKALKEPQKKI 196 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~---------~g-----~~~G~afV~f~~~~~a~~A~~~~~~~~ 196 (453)
.-|.|-+.|.+.+. .|...|++||.|.+-.-..+.. .. ....+..|+|.+..+|.+||......|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 46888899777655 6678999999987732111100 00 124578999999999999999999999
Q ss_pred CCeEeEEEecc
Q 012923 197 GNRMTACQLAS 207 (453)
Q Consensus 197 ~gr~~~v~~~~ 207 (453)
.|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888774
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.13 E-value=0.0067 Score=44.50 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=47.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCC--cceEEEEEEccHHHHHHHHHcCCCc
Q 012923 130 HRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGK--SKGYGFILFKTRSGARKALKEPQKK 195 (453)
Q Consensus 130 ~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~--~~G~afV~f~~~~~a~~A~~~~~~~ 195 (453)
+-+|.|+.||+.+|++++.+.+..+-.+.....+..+.+-+ .-.-|||.|.+.+++....+..++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 45799999999999999888887765543332222222111 1134999999999999999988854
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.0035 Score=60.46 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
|+|||. .|..+++.+|.++|++||.|..+....+. .-||.|+|.+.+++..++...
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 799998 89999999999999999999999776543 259999999999999888664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.68 E-value=0.0067 Score=58.49 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=44.1
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
.++|||. .|..+++.+|.++|++||.|.++.+..+. .-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 3689997 79999999999999999999999887653 469999999999999887664
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.84 E-value=1.2 Score=43.78 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=45.4
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
...++|+ +|..|...+|.++|+.||.| +|+++-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 99999999999999999954 6666544 369999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.83 E-value=1.2 Score=43.87 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=44.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCC
Q 012923 131 RKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQ 193 (453)
Q Consensus 131 ~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~ 193 (453)
..++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 355555 99999999999999999965 66656553 69999999999999998775
No 403
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=55.93 E-value=4.1 Score=40.85 Aligned_cols=9 Identities=44% Similarity=0.471 Sum_probs=4.3
Q ss_pred HHHHHHhcc
Q 012923 146 TLIDAFKQY 154 (453)
Q Consensus 146 ~l~~~f~~~ 154 (453)
.|..+|..+
T Consensus 385 ~Ll~~F~~~ 393 (649)
T 3tj1_A 385 TLTTLFKTH 393 (649)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444555543
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=52.43 E-value=58 Score=22.87 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=43.5
Q ss_pred ccEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcC
Q 012923 247 QRKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEP 309 (453)
Q Consensus 247 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~ 309 (453)
.+.|.|-|+|..+-..++.-.....|---.|..+ .|-|.|.|.+.++-..|+..+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3577899999999988887777777766666654 456999999999998888764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.84 E-value=67 Score=22.56 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=45.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcC
Q 012923 129 VHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 129 ~~~~lfV~nLp~~~te~~l~~~f~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~ 192 (453)
..|-|-|-|||..+-..++.-.....|---.|..+- |-|.|.|.+.++...|+..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 357889999999999999888888888766776553 35999999999999999753
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=40.37 E-value=76 Score=20.79 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=44.3
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
.+|.|.++.-..-...|...+.. -.|..+.+-.. .+-+.|.|.+.+....+|..+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 47899999988888999999998 78888777443 5668888886777778887755
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=39.58 E-value=9.1 Score=38.38 Aligned_cols=8 Identities=0% Similarity=-0.023 Sum_probs=3.3
Q ss_pred HHHHHhcc
Q 012923 147 LIDAFKQY 154 (453)
Q Consensus 147 l~~~f~~~ 154 (453)
+..++.-|
T Consensus 383 f~~Ll~~F 390 (649)
T 3tj1_A 383 FNTLTTLF 390 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33344444
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.36 E-value=58 Score=26.41 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=35.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hccCCeeEEEEcccCCCCCcceEEEEEEccHHH
Q 012923 132 KIFVHGLGW-D--------TKAETLIDAF--KQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSG 184 (453)
Q Consensus 132 ~lfV~nLp~-~--------~te~~l~~~f--~~~G~i~~v~i~~d~~~g~~~G~afV~f~~~~~ 184 (453)
++.|-|+|. . ....+|++.| ..|.++. |+.+.++ .-++|+|.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 577888887 2 3346899977 8998875 5566654 2478999999986543
No 409
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=33.40 E-value=43 Score=21.85 Aligned_cols=23 Identities=9% Similarity=0.488 Sum_probs=17.7
Q ss_pred eEEEEcccCCCCCcceEEEEEEcc
Q 012923 158 EDCKAVCDKVSGKSKGYGFILFKT 181 (453)
Q Consensus 158 ~~v~i~~d~~~g~~~G~afV~f~~ 181 (453)
+.++++.++ ...+.|+++|.|.+
T Consensus 20 R~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhhcc-CCCcCceEEEEEec
Confidence 456777776 45678999999987
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.87 E-value=79 Score=25.60 Aligned_cols=59 Identities=12% Similarity=-0.011 Sum_probs=39.2
Q ss_pred cccEEEEecCCCC---------ccHHHHHHHH--hccCCcceeeeeccCCCCCCceEEEEEECCHH-HHHHHHH
Q 012923 246 TQRKIFVSNVGSE---------LEPQKLLAFF--SKYGEIEEGPLGIDKATGKPKGFCLFVYKTVD-AAKKALE 307 (453)
Q Consensus 246 ~~~~l~V~nLp~~---------~t~~~l~~~F--~~~G~i~~v~i~~d~~~g~~kg~afV~F~~~~-~A~~Al~ 307 (453)
....+.|-|+|.. .+...|++.| +.|..+. |+.+..+ ..++|++.|.|.+.- --..|+.
T Consensus 11 WPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 11 YPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp ESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 4458889999872 3447899977 9998765 5444443 346899999998633 3334443
No 411
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=28.39 E-value=12 Score=40.59 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=11.3
Q ss_pred eEEEEEEccHHHHHHHHHcC
Q 012923 173 GYGFILFKTRSGARKALKEP 192 (453)
Q Consensus 173 G~afV~f~~~~~a~~A~~~~ 192 (453)
+.++|...+.+-|......+
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHHH
Confidence 34666666666655554433
No 412
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.86 E-value=8.3 Score=30.71 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=17.2
Q ss_pred HHHHHHHhccCCcceeeeeccCCCCCCceEEEEEEC
Q 012923 262 QKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK 297 (453)
Q Consensus 262 ~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~ 297 (453)
+++.++|...|.|+++.. .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 345567777777776543 2899999865
No 413
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.36 E-value=13 Score=40.25 Aligned_cols=11 Identities=0% Similarity=-0.191 Sum_probs=4.7
Q ss_pred CCHHHHHHHHH
Q 012923 297 KTVDAAKKALE 307 (453)
Q Consensus 297 ~~~~~A~~Al~ 307 (453)
.+...|..+..
T Consensus 449 ~sr~~~e~la~ 459 (1108)
T 3l9o_A 449 FSKRDCEELAL 459 (1108)
T ss_dssp SCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 34444444433
No 414
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=24.36 E-value=16 Score=37.29 Aligned_cols=8 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcCccchh
Q 012923 84 EEDDEPIL 91 (453)
Q Consensus 84 ~~~~e~~~ 91 (453)
.+..|+..
T Consensus 715 ~~mQEELk 722 (956)
T 4aco_A 715 SEMQEQLK 722 (956)
T ss_dssp --------
T ss_pred HhHHHHHH
Confidence 33334433
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.11 E-value=2e+02 Score=20.28 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.5
Q ss_pred eeEEEEcccCCCCCcceEEEEEEccHHHHHHHHHcCCC
Q 012923 157 IEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQK 194 (453)
Q Consensus 157 i~~v~i~~d~~~g~~~G~afV~f~~~~~a~~A~~~~~~ 194 (453)
|..+.+.. ...||-||++...++...++....+
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55554433 3789999999999988888876653
No 416
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.06 E-value=1.1e+02 Score=22.54 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=25.9
Q ss_pred cceeeeeccCCCCCCceEEEEEECCHHHHHHHHHcCC
Q 012923 274 IEEGPLGIDKATGKPKGFCLFVYKTVDAAKKALEEPH 310 (453)
Q Consensus 274 i~~v~i~~d~~~g~~kg~afV~F~~~~~A~~Al~~~~ 310 (453)
|.+|..+.. .+||-||+=.+..++..||..+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhccc
Confidence 666655322 49999999999999999999887
No 417
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.06 E-value=1.7e+02 Score=18.88 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=43.8
Q ss_pred cEEEEecCCCCccHHHHHHHHhccCCcceeeeeccCCCCCCceEEEEEEC----CHHHHHHHHHcCC
Q 012923 248 RKIFVSNVGSELEPQKLLAFFSKYGEIEEGPLGIDKATGKPKGFCLFVYK----TVDAAKKALEEPH 310 (453)
Q Consensus 248 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~d~~~g~~kg~afV~F~----~~~~A~~Al~~~~ 310 (453)
.++.|.++.-..-...|...+...-.|..+.+-.. .+-+.|.|. +.+....+|..+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 37889999888788889999998877887777544 456889885 5667777777654
No 418
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.98 E-value=84 Score=22.23 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.3
Q ss_pred CcceeeeeccCCCCCCceEEEEEECC
Q 012923 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (453)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (453)
.|+.|+|.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47777776665678889999999973
No 419
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=21.35 E-value=2e+02 Score=20.94 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHhc-cCC---eeEE-EEcccCCCCCcceEEEEEEccHHHHHHHH
Q 012923 140 WDTKAETLIDAFKQ-YGE---IEDC-KAVCDKVSGKSKGYGFILFKTRSGARKAL 189 (453)
Q Consensus 140 ~~~te~~l~~~f~~-~G~---i~~v-~i~~d~~~g~~~G~afV~f~~~~~a~~A~ 189 (453)
.+.+..+|++.+.+ |+. +.-| .+...-..+++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 67788888877754 332 2222 23333335688888876 67777766654
No 420
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=21.06 E-value=1.5e+02 Score=23.26 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=26.4
Q ss_pred CCccHHHHHHHHhc-cCCcceeeeeccC----CCCCCceEEEEEECCHHHHHH
Q 012923 257 SELEPQKLLAFFSK-YGEIEEGPLGIDK----ATGKPKGFCLFVYKTVDAAKK 304 (453)
Q Consensus 257 ~~~t~~~l~~~F~~-~G~i~~v~i~~d~----~~g~~kg~afV~F~~~~~A~~ 304 (453)
.+.+..+|++-+.. |+.-.++.++..- ..|.+.|||.| |++.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46788888876664 4432222222211 23556777766 677766654
No 421
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.88 E-value=1e+02 Score=21.74 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=20.9
Q ss_pred CeeEEEEcccCCCCCcceEEEEEEcc
Q 012923 156 EIEDCKAVCDKVSGKSKGYGFILFKT 181 (453)
Q Consensus 156 ~i~~v~i~~d~~~g~~~G~afV~f~~ 181 (453)
.|++|+|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887666678899999999863
No 422
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.13 E-value=93 Score=22.65 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred CcceeeeeccCCCCCCceEEEEEECC
Q 012923 273 EIEEGPLGIDKATGKPKGFCLFVYKT 298 (453)
Q Consensus 273 ~i~~v~i~~d~~~g~~kg~afV~F~~ 298 (453)
.|+.|+|.+-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Done!