Query 012924
Match_columns 453
No_of_seqs 222 out of 1424
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01001 putative inner membra 100.0 1.1E-53 2.4E-58 461.2 24.5 242 100-368 547-794 (795)
2 PRK02944 OxaA-like protein pre 100.0 9.9E-53 2.1E-57 412.9 24.9 209 98-346 31-243 (255)
3 PRK00145 putative inner membra 100.0 3.1E-52 6.8E-57 402.1 24.6 210 104-347 2-213 (223)
4 PRK01318 membrane protein inse 100.0 2.1E-51 4.5E-56 437.5 24.4 208 100-350 298-511 (521)
5 PRK01315 putative inner membra 100.0 1.4E-50 3.1E-55 409.2 27.1 244 101-350 5-261 (329)
6 PRK01622 OxaA-like protein pre 100.0 2E-50 4.2E-55 396.8 26.3 212 98-349 32-253 (256)
7 PRK02463 OxaA-like protein pre 100.0 4.2E-50 9E-55 403.1 25.4 208 100-348 33-252 (307)
8 TIGR03592 yidC_oxa1_cterm memb 100.0 2.9E-49 6.3E-54 369.8 21.6 181 130-345 1-181 (181)
9 PRK03449 putative inner membra 100.0 6.6E-48 1.4E-52 386.4 24.9 232 104-349 2-272 (304)
10 PRK02201 putative inner membra 100.0 7.3E-48 1.6E-52 392.7 23.6 222 100-346 100-341 (357)
11 PF02096 60KD_IMP: 60Kd inner 100.0 5.3E-48 1.1E-52 363.8 20.2 193 130-347 2-197 (198)
12 COG0706 YidC Preprotein transl 100.0 1.7E-47 3.6E-52 385.9 23.4 215 100-350 84-300 (314)
13 PRK00247 putative inner membra 100.0 9.9E-47 2.1E-51 391.3 22.3 251 104-355 2-285 (429)
14 PRK02654 putative inner membra 100.0 1.3E-38 2.9E-43 318.7 22.0 113 100-219 2-118 (375)
15 KOG1239 Inner membrane protein 99.9 4.2E-24 9.1E-29 220.3 18.4 204 100-345 78-290 (372)
16 KOG1239 Inner membrane protein 99.0 2E-10 4.3E-15 119.2 5.6 239 100-344 4-245 (372)
17 COG1422 Predicted membrane pro 96.1 0.025 5.5E-07 54.5 8.5 90 130-220 45-142 (201)
18 TIGR03593 yidC_nterm membrane 79.2 1.4 3.1E-05 45.6 2.7 23 100-122 343-365 (366)
19 PF01956 DUF106: Integral memb 72.4 9.7 0.00021 35.2 6.1 66 154-219 43-109 (168)
20 PF09973 DUF2208: Predicted me 63.0 25 0.00054 35.0 7.0 80 127-220 21-111 (233)
21 COG1422 Predicted membrane pro 57.9 1.6E+02 0.0034 28.9 11.3 66 154-222 75-148 (201)
22 PF05280 FlhC: Flagellar trans 56.5 17 0.00038 34.5 4.6 37 183-219 38-85 (175)
23 PRK00247 putative inner membra 51.7 2.4E+02 0.0052 30.7 12.6 13 132-144 38-50 (429)
24 COG1377 FlhB Flagellar biosynt 43.4 1.1E+02 0.0024 32.5 8.4 42 133-179 195-239 (363)
25 KOG3817 Uncharacterized conser 39.9 70 0.0015 34.0 6.2 30 297-326 250-279 (452)
26 KOG1532 GTPase XAB1, interacts 38.1 1E+02 0.0022 32.1 6.9 91 100-202 217-310 (366)
27 PF09958 DUF2192: Uncharacteri 35.8 64 0.0014 32.2 4.9 45 159-203 9-53 (231)
28 PRK09108 type III secretion sy 33.7 1.1E+02 0.0024 32.2 6.7 31 144-179 201-234 (353)
29 PRK12772 bifunctional flagella 33.2 98 0.0021 35.0 6.5 30 145-179 463-495 (609)
30 TIGR00328 flhB flagellar biosy 32.8 84 0.0018 33.0 5.6 40 135-179 190-232 (347)
31 PF06936 Selenoprotein_S: Sele 32.3 77 0.0017 30.6 4.8 16 130-145 35-50 (190)
32 PRK12721 secretion system appa 31.4 1.3E+02 0.0028 31.6 6.7 31 144-179 199-232 (349)
33 KOG3817 Uncharacterized conser 29.9 1.5E+02 0.0033 31.6 6.7 69 131-199 277-351 (452)
34 PRK08156 type III secretion sy 29.7 1.4E+02 0.0029 31.7 6.5 31 144-179 194-227 (361)
35 KOG4075 Cytochrome c oxidase, 29.5 97 0.0021 29.5 4.8 61 158-218 49-123 (167)
36 PRK06298 type III secretion sy 28.4 1.5E+02 0.0032 31.4 6.5 30 145-179 201-233 (356)
37 PRK05702 flhB flagellar biosyn 28.4 1.5E+02 0.0033 31.3 6.6 28 147-179 209-239 (359)
38 PRK12468 flhB flagellar biosyn 26.7 1.7E+02 0.0037 31.2 6.7 28 147-179 209-239 (386)
39 PF05190 MutS_IV: MutS family 25.6 97 0.0021 24.8 3.7 36 163-198 2-37 (92)
40 KOG1631 Translocon-associated 25.5 36 0.00078 34.0 1.3 14 404-417 219-232 (261)
41 TIGR02829 spore_III_AE stage I 24.5 8.9E+02 0.019 25.9 13.9 66 271-341 133-200 (381)
42 TIGR00828 EIID-AGA PTS system, 22.2 2.4E+02 0.0051 28.8 6.4 43 169-219 39-81 (271)
43 PRK12722 transcriptional activ 21.7 4.5E+02 0.0097 25.5 7.9 37 183-219 38-85 (187)
44 PRK09855 PTS system N-acetylga 21.5 2.4E+02 0.0051 28.7 6.2 31 169-199 41-71 (263)
45 COG3105 Uncharacterized protei 21.0 6.6E+02 0.014 23.2 8.6 34 132-173 16-49 (138)
46 PRK12860 transcriptional activ 20.8 4.3E+02 0.0093 25.7 7.5 37 183-219 38-85 (189)
47 PRK02201 putative inner membra 20.8 9.4E+02 0.02 25.5 10.7 116 100-221 96-225 (357)
No 1
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.1e-53 Score=461.20 Aligned_cols=242 Identities=31% Similarity=0.566 Sum_probs=199.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e 179 (453)
.+|||++|+.|+.+++.++...+..+ ..+||++||++||+||++++||+++|+++++||+.|||+|++||+|||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 36999999999876664443333222 2379999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc--cccCCcCchhHhhhhcCCCcccccc-
Q 012924 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLP- 256 (453)
Q Consensus 180 k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl--Wi~dLt~pD~i~a~~~g~~~~w~~p- 256 (453)
|+|+|+|+|||||||||++||||+|+|+||||++|++|+++.+ +...+|+ |++||+.+|++ +.|..|
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence 9999999999999999999999999999999999999998754 7788898 99999999953 233322
Q ss_pred -ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924 257 -FVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (453)
Q Consensus 257 -~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~--~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn 333 (453)
|++ .++.||||++++++|++++++.... ..++.+++++.|+++||+|+++|++++|+||+|||++||
T Consensus 695 ~FiG----------d~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSN 764 (795)
T PRK01001 695 WFIG----------NEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSM 764 (795)
T ss_pred cccc----------cchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 221 2678999999999999999864321 112234455677789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccccchhhhHhhhhhcc
Q 012924 334 VLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 368 (453)
Q Consensus 334 l~siiQ~~~lrk~~~~~~~~~~~~~~~~~~~~~k~ 368 (453)
+++++||+++++.++.+. .+++++++++|.
T Consensus 765 l~SI~QQ~iI~k~~~~kK-----i~a~ie~nkkk~ 794 (795)
T PRK01001 765 LLGVIQQWVTNKILDSKH-----LKNEVVPNKKKH 794 (795)
T ss_pred HHHHHHHHHHHhhcchhH-----HHHHHHhhhhcc
Confidence 999999999999744332 356677766543
No 2
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=9.9e-53 Score=412.88 Aligned_cols=209 Identities=28% Similarity=0.638 Sum_probs=187.3
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcC
Q 012924 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (453)
Q Consensus 98 ~~~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D 177 (453)
+.+|.|+++|..|++++++++|+.+ | .+||++||++|+++|++++|++++|+++++||+++|||+++||+||++|
T Consensus 31 ~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~ 105 (255)
T PRK02944 31 KSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSK 105 (255)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCC
Confidence 4567778999999999999999864 3 4699999999999999999999999999999999999999999999874
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccc
Q 012924 178 ----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (453)
Q Consensus 178 ----~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w 253 (453)
++++|+|+++|||||||||++||+|+|+|+||||++|++++++.+ +.++||+|+ ||+.+|
T Consensus 106 ~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D------------- 169 (255)
T PRK02944 106 DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD------------- 169 (255)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch-------------
Confidence 567899999999999999999999999999999999999999864 778999999 999887
Q ss_pred cccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924 254 LLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (453)
Q Consensus 254 ~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn 333 (453)
||++||+++++++++++++...... ..+.+|+.|+++||+|+++|+.++|+|+++||++||
T Consensus 170 -----------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~ 230 (255)
T PRK02944 170 -----------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGN 230 (255)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999887432111 122346778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 012924 334 VLSTAQQVWLRKL 346 (453)
Q Consensus 334 l~siiQ~~~lrk~ 346 (453)
+|+++|++++++.
T Consensus 231 ~~~i~Q~~~l~~~ 243 (255)
T PRK02944 231 IFMIAQTYLIKGP 243 (255)
T ss_pred HHHHHHHHHHcCc
Confidence 9999999999873
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.1e-52 Score=402.10 Aligned_cols=210 Identities=32% Similarity=0.613 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHH
Q 012924 104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI 181 (453)
Q Consensus 104 f~~i~~p~e~vL~~i~~~l~~lg--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~ 181 (453)
+++|.+++..+++++|+++..++ .+++||++||++|+++|++++|++++|+++++||+++|||+++||+|||+|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 45677777777777777654321 2356999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccccCCC
Q 012924 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH 261 (453)
Q Consensus 182 q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~ 261 (453)
|+|+++|||||||||++||+|+|+|+|||+++|+++|++++ +.++||+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence 99999999999999999999999999999999999999864 7889999999999887
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHH
Q 012924 262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341 (453)
Q Consensus 262 ~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~ 341 (453)
||++||+++++++|++++.+.+. +....+.++.|+++||+++++++.++|+|+++||++||+|+++|++
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~ 207 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999886543 1233446788999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 012924 342 WLRKLG 347 (453)
Q Consensus 342 ~lrk~~ 347 (453)
++|++.
T Consensus 208 ~l~~~~ 213 (223)
T PRK00145 208 FIKKLE 213 (223)
T ss_pred HHHhhc
Confidence 999863
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=2.1e-51 Score=437.51 Aligned_cols=208 Identities=38% Similarity=0.755 Sum_probs=189.2
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e 179 (453)
++||+.+|+.|+.++|+++|.++ | +||++||++||++|++++|++++|+++++||+++||+|++||+||++|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 58999999999999999999864 2 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCcCchhHhhhhcCCCcccccccc
Q 012924 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFV 258 (453)
Q Consensus 180 k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl-Wi~dLt~pD~i~a~~~g~~~~w~~p~v 258 (453)
++|+|+|+|||||||||++||+|+|+|+||||++|++++++.+ +.+++|+ ||+||+.+|
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999999865 7889998 999999988
Q ss_pred CCCCCCCcchhHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924 259 DGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN 333 (453)
Q Consensus 259 ~g~~~lgw~d~~py~IL-----PIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn 333 (453)
||+|| |+++++++|++++++..+ .+++| +.||.+||+++++|+.++|+||++||++||
T Consensus 432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn 494 (521)
T PRK01318 432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494 (521)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 999999999999986433 35543 345566999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 012924 334 VLSTAQQVWLRKLGGAK 350 (453)
Q Consensus 334 l~siiQ~~~lrk~~~~~ 350 (453)
+++++|++++++..+.+
T Consensus 495 ~~si~Q~~~l~~~~~~~ 511 (521)
T PRK01318 495 LLTIIQQYLINRRLEKK 511 (521)
T ss_pred HHHHHHHHHHhhhcccc
Confidence 99999999999975544
No 5
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.4e-50 Score=409.23 Aligned_cols=244 Identities=26% Similarity=0.462 Sum_probs=182.5
Q ss_pred CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHH
Q 012924 101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (453)
Q Consensus 101 ~gwf~~i~~p~e~vL----~~i~~~l~~l-g--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkK 173 (453)
++||++|.+|++|++ .++|..+..+ | .+++||+|||++|+++|++++||+++|+++++||+++||||++||+|
T Consensus 5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k 84 (329)
T PRK01315 5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 578999999988877 4456554322 2 12469999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccc
Q 012924 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW 253 (453)
Q Consensus 174 yk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w 253 (453)
|++|++++++|+++|||||||||++||+|+|+|+||||++|++||++++.+ ... .+|.+++...- ..+...|..+.-
T Consensus 85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~-~~~-~~~~~~~~~s~-~~~~~fg~~L~~ 161 (329)
T PRK01315 85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG-DGI-GPINPPLLESF-RHAHIFGAPLAA 161 (329)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc-cchhhhHHHhh-hccccccccccc
Confidence 999999999999999999999999999999999999999999999876421 111 22333332100 000011111110
Q ss_pred cccccCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924 254 LLPFVDGHPPLGWH-DTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (453)
Q Consensus 254 ~~p~v~g~~~lgw~-d~~py~ILPIL~~~s~~ls~ki-~~----~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L 327 (453)
++... ...|+. ..+.+++||+++++++|++++. +. +...++++.+++|.|+++||+|+++|+.++|+||+|
T Consensus 162 --~f~~~-~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~L 238 (329)
T PRK01315 162 --TFLQA-LNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLF 238 (329)
T ss_pred --ccccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 001222 2345789999999999988653 21 122235666678889999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcCCC
Q 012924 328 YWFTNNVLSTAQQVWLRKLGGAK 350 (453)
Q Consensus 328 YWitSnl~siiQ~~~lrk~~~~~ 350 (453)
||++||+|+++|++++.+.++.+
T Consensus 239 YW~~snl~si~Qq~~v~r~~p~p 261 (329)
T PRK01315 239 YWLTSNVWTMGQQFYVIRNNPTP 261 (329)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999877765443
No 6
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2e-50 Score=396.84 Aligned_cols=212 Identities=27% Similarity=0.521 Sum_probs=187.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhhcHHHHHHHHH
Q 012924 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (453)
Q Consensus 98 ~~~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~ks----s~kMq~LqPel~~IqkK 173 (453)
+.+|+|.+++.+|+.++++++|+++ | .+||++|+++|+++|++++|++++|+|+ ++||+++|||+++||+|
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 4667778999999999999999875 3 3699999999999999999999999999 89999999999999999
Q ss_pred hhc--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhc
Q 012924 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (453)
Q Consensus 174 yk~--D~e---k~q~E~~kLYKk~gvnPl~-GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~ 247 (453)
|++ |++ ++|+|+++|||||||||++ ||+|+|+|+||||++|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 987 544 5789999999999999999 99999999999999999999975 4889999999 898764
Q ss_pred CCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (453)
Q Consensus 248 g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L 327 (453)
+|||++++++++++++++.+.......++++|.|++++|+++++++.++|+|+++
T Consensus 177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL 231 (256)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998765332222334567889999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcCC
Q 012924 328 YWFTNNVLSTAQQVWLRKLGGA 349 (453)
Q Consensus 328 YWitSnl~siiQ~~~lrk~~~~ 349 (453)
||++||+|+++|++++++.+..
T Consensus 232 YW~~snl~si~Q~~~l~~~~~~ 253 (256)
T PRK01622 232 YWITGGLFLMGQTIVLRKVMER 253 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999997443
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=4.2e-50 Score=403.11 Aligned_cols=208 Identities=26% Similarity=0.485 Sum_probs=181.5
Q ss_pred CCCch-HHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhhcHHHHHHHHHh
Q 012924 100 NGGWF-GFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY 174 (453)
Q Consensus 100 ~~gwf-~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~ks----s~kMq~LqPel~~IqkKy 174 (453)
.+||+ ++++.|+.++++++|+.+ | .+||+|||++||+||++++||+++|+++ ++||+++|||+++||+||
T Consensus 33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky 107 (307)
T PRK02463 33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL 107 (307)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 36775 799999999999999764 3 3699999999999999999999988865 689999999999999999
Q ss_pred hcC-----HHHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhc
Q 012924 175 AGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (453)
Q Consensus 175 k~D-----~ek~q~E~~kLYKk~gvnPl~--GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~ 247 (453)
+++ ++++|+|+++|||||||||++ ||+|+|+|+|||+|+|++++.. +++.+++|+|+ ||+.||
T Consensus 108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~------- 177 (307)
T PRK02463 108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS------- 177 (307)
T ss_pred hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh-------
Confidence 863 235689999999999999998 8999999999999999999975 46889999999 888553
Q ss_pred CCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI 327 (453)
Q Consensus 248 g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L 327 (453)
++||++++++++++++++..... +...++||.|+++||+|+++|++++|+||++
T Consensus 178 -------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~l 231 (307)
T PRK02463 178 -------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGL 231 (307)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999887543222 3344568899999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcC
Q 012924 328 YWFTNNVLSTAQQVWLRKLGG 348 (453)
Q Consensus 328 YWitSnl~siiQ~~~lrk~~~ 348 (453)
||++||+|+++|++++++++.
T Consensus 232 YW~~snlfsi~Q~~i~~~~~~ 252 (307)
T PRK02463 232 YWLVGGFFSIIQQLITTYILK 252 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 8
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=2.9e-49 Score=369.79 Aligned_cols=181 Identities=40% Similarity=0.772 Sum_probs=168.4
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012924 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (453)
Q Consensus 130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPI 209 (453)
|||++|+++|+++|++++|++++|+++++||+++|||+++||+||++|++++++|+++||||||+||++||+|+|+|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 012924 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 289 (453)
Q Consensus 210 figlf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki 289 (453)
|+++|+++|++. ++.++||+|++||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999985 48899999999999887 7899999999999999998
Q ss_pred cCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 012924 290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345 (453)
Q Consensus 290 ~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk 345 (453)
.....+ + .+++|.|++++|+++++++.++|+|+++||++||+|+++|++++|+
T Consensus 129 ~~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 129 SPSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred cCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 654222 2 2356788899999999999999999999999999999999999875
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6.6e-48 Score=386.42 Aligned_cols=232 Identities=23% Similarity=0.406 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHHHhhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHH
Q 012924 104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180 (453)
Q Consensus 104 f~~i~~p~e~vL~~i~~~l~~-lg--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek 180 (453)
+.++.+|+.+++.++|..+.. +| .+.+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|+++
T Consensus 2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~ 81 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK 81 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence 567788999999998886542 11 134699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CCcccccCCc
Q 012924 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS 237 (453)
Q Consensus 181 ~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~--gl~~---------------------~gflWi~dLt 237 (453)
+++|+++|||||||||++||+|+|+|+|||+++|+++|+++.. +... ++|+|..
T Consensus 82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~--- 158 (304)
T PRK03449 82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR--- 158 (304)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence 9999999999999999999999999999999999999998542 1111 1333322
Q ss_pred CchhHhhhhcCCCcc-ccc-------cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHhH-HHH
Q 012924 238 GPTTIAARQSGSGIS-WLL-------PFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP----PQTDDPAQK-NTL 304 (453)
Q Consensus 238 ~pD~i~a~~~g~~~~-w~~-------p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~----~~~~~p~qk-~mk 304 (453)
.+|..++ |.- ++.+.. .++..+.++++||++++++|++++++.. .+..++.+. ++|
T Consensus 159 --------~~g~pL~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k 227 (304)
T PRK03449 159 --------LFGAPLSAYITMPRSGLDAFVDFT---RTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNK 227 (304)
T ss_pred --------hcCCChHhhhcccchhhchhcccc---cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHH
Confidence 1111111 110 010100 0111124567899999999999886421 111233333 457
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHHhcCC
Q 012924 305 LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA 349 (453)
Q Consensus 305 ~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk~~~~ 349 (453)
.|+++||+|+++|++++|+|+.|||++||+|+++||+++++..+.
T Consensus 228 ~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~ 272 (304)
T PRK03449 228 LALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK 272 (304)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 889999999999999999999999999999999999999875444
No 10
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=7.3e-48 Score=392.74 Aligned_cols=222 Identities=19% Similarity=0.361 Sum_probs=183.2
Q ss_pred CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc
Q 012924 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (453)
Q Consensus 100 ~~g-wf~~i~~p~e~vL~~i~--~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~ 176 (453)
++| |+++|+.|+.+++.+++ ..+. .+.+++||+|||++|+++|++++|++++|+++++||+++|||+++||+||++
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 455 66999999999999996 2221 1234568999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCC
Q 012924 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (453)
Q Consensus 177 D------~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~ 250 (453)
| ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.+ +....|+|+ ||+.+|..
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~-------- 247 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ-------- 247 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh--------
Confidence 6 678999999999999999999999999999999999999998854 778899999 99987621
Q ss_pred ccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC----C----C---CCCCHHhHHHHHHHHHHHHHHHHHhh
Q 012924 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----P---QTDDPAQKNTLLVFKFLPLMIGYFSL 319 (453)
Q Consensus 251 ~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~----~----~---~~~~p~qk~mk~m~~~mPlm~l~f~~ 319 (453)
..+ ++..+|+++++++++++++++.+++ . . ..+.++++.++.|+++||+++++|++
T Consensus 248 --~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~ 314 (357)
T PRK02201 248 --EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV 314 (357)
T ss_pred --hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 1112567777777877777765431 1 0 11122344577899999999999999
Q ss_pred hhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 012924 320 SVPSGLSIYWFTNNVLSTAQQVWLRKL 346 (453)
Q Consensus 320 ~~PagL~LYWitSnl~siiQ~~~lrk~ 346 (453)
++|+||.|||++||+|+++|+++++++
T Consensus 315 ~~PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 315 IFAAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985
No 11
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=5.3e-48 Score=363.81 Aligned_cols=193 Identities=39% Similarity=0.730 Sum_probs=177.2
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012924 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (453)
Q Consensus 130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPI 209 (453)
|||++|+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|++++||||||||++||+|+|+|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-hccccCCcccccCCcCchhHhhhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012924 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME 288 (453)
Q Consensus 210 figlf~~Lr~ma~-~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~k 288 (453)
|+++|+++|++++ +++.++||+|++||+.+|+. ...||++||++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 67889999999999999831 123899999999999999999
Q ss_pred hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHHhc
Q 012924 289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG 347 (453)
Q Consensus 289 i~~~--~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk~~ 347 (453)
++.. ...++...+++|.|++++|+++++++.++|+|+++||++||+|+++|++++|+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8642 2223455667889999999999999999999999999999999999999999864
No 12
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-47 Score=385.87 Aligned_cols=215 Identities=35% Similarity=0.630 Sum_probs=189.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhh-cCH
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ 178 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk-~D~ 178 (453)
+.|||.++..++..++.++|... |+ +||++||++|++||++++|++.++.++++||+++||++++||+||| +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 67999999988888888886543 33 7999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCcCchhHhhhhcCCCccccccc
Q 012924 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (453)
Q Consensus 179 ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl-Wi~dLt~pD~i~a~~~g~~~~w~~p~ 257 (453)
+++|+|+|+|||||||||++||+|+++|+||||++|+++++..+ +...+|+ |+.||+.+|+.
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp~--------------- 221 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDPD--------------- 221 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCCc---------------
Confidence 99999999999999999999999999999999999999999865 7777887 99999987720
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHH
Q 012924 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 337 (453)
Q Consensus 258 v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~si 337 (453)
..+++||++++++|+++++...... ++..++++.|+++||+++.++++++|+||.+||++||+|++
T Consensus 222 -------------~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi 287 (314)
T COG0706 222 -------------YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI 287 (314)
T ss_pred -------------hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 1236699999999999998665322 23344677889999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012924 338 AQQVWLRKLGGAK 350 (453)
Q Consensus 338 iQ~~~lrk~~~~~ 350 (453)
+||+++++.+..+
T Consensus 288 ~Qq~ii~~~~~~~ 300 (314)
T COG0706 288 LQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHhhhhhhh
Confidence 9999999974433
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=9.9e-47 Score=391.31 Aligned_cols=251 Identities=23% Similarity=0.352 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHHHHhhcc-ccCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcC---
Q 012924 104 FGFISEAMEFVLKILKDGID-AVHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (453)
Q Consensus 104 f~~i~~p~e~vL~~i~~~l~-~lglp--~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D--- 177 (453)
+++|.+|+.++|.++|.++. .+|++ ++||++||++||+||++++||+++|+++++||+.+||+|++||+||+++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 56789999999999998876 35643 4599999999999999999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCCcccccCCcCchhH---hhhhcCCC
Q 012924 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTI---AARQSGSG 250 (453)
Q Consensus 178 --~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~--~gl~~~gflWi~dLt~pD~i---~a~~~g~~ 250 (453)
++++|+|+++|||+|||||++||+|+|+|+|||||+|++|++|+. +|+.+..+.|+.-|+..|.- .++.+|..
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 356889999999999999999999999999999999999999975 45554444566666655421 12233322
Q ss_pred ccccccccCCC--CCCCcc-hhHHHHHHHHHHHHH--HHHHHHhcCC----C-CCCCH----HhHHHHHHHHHHHHHHHH
Q 012924 251 ISWLLPFVDGH--PPLGWH-DTAAYLVLPVLLVVS--QYASMELMKP----P-QTDDP----AQKNTLLVFKFLPLMIGY 316 (453)
Q Consensus 251 ~~w~~p~v~g~--~~lgw~-d~~py~ILPIL~~~s--~~ls~ki~~~----~-~~~~p----~qk~mk~m~~~mPlm~l~ 316 (453)
++- .+..... -.+|.. ..+.+++||++++++ +++++.+..- . ..+++ +++.|+.|++++|+|+++
T Consensus 162 L~~-~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPA-YVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred ccc-ccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 220 0000000 001111 112467888555544 4566554211 1 11223 445567778999999999
Q ss_pred Hhhh--hhhhhHHHHHhhhHHHHHHHHH----HHHhcCCCCcccc
Q 012924 317 FSLS--VPSGLSIYWFTNNVLSTAQQVW----LRKLGGAKPVVTE 355 (453)
Q Consensus 317 f~~~--~PagL~LYWitSnl~siiQ~~~----lrk~~~~~~~~~~ 355 (453)
++++ +|+||+|||++||+|+++||++ ++++|...+.+.+
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~ 285 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKE 285 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 7776 7999999999999999999994 5566555554433
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.3e-38 Score=318.72 Aligned_cols=113 Identities=33% Similarity=0.604 Sum_probs=105.8
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHH----HHHHHhh
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~----~IqkKyk 175 (453)
|+||+.+..+++.++++++|.++ + +||++||++|++||++++||+++|+|+++||+.+||+|+ +||+||+
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 57887767789999999999753 3 799999999999999999999999999999999999985 7999999
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 012924 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (453)
Q Consensus 176 ~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ 219 (453)
+|++++|+|+|+|||||| ||++||+|+|+|+|||+++|++||.
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~ 118 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG 118 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999999999999999999996
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.2e-24 Score=220.29 Aligned_cols=204 Identities=21% Similarity=0.367 Sum_probs=171.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG--- 176 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~--- 176 (453)
..+|.. +..+.+.+..+|+.. |+| ||.+|+..|+.+|.+++|+.++++++.+|++.+.|+|+++.++.+.
T Consensus 78 ~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~ 150 (372)
T KOG1239|consen 78 LSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQ 150 (372)
T ss_pred hcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhc
Confidence 345544 345666777788764 666 7999999999999999999999999999999999999999998864
Q ss_pred --C-HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCCcccccCCcCchhHhhhhcCCCc
Q 012924 177 --N-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGI 251 (453)
Q Consensus 177 --D-~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~--~gl~~~gflWi~dLt~pD~i~a~~~g~~~ 251 (453)
+ -...|+|+++++++||++| .....+++|.|+|+++|.+||.|+. +++.++|++|++||+.+|
T Consensus 151 ~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d----------- 218 (372)
T KOG1239|consen 151 DNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD----------- 218 (372)
T ss_pred cccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-----------
Confidence 1 3356778999999999999 9888888899999999999999985 477888999999999887
Q ss_pred cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012924 252 SWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 330 (453)
Q Consensus 252 ~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~-~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWi 330 (453)
|++++|+++.++++..+++...... .+.....|+.+++++|+.++.++.++|.|+++||+
T Consensus 219 -------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl 279 (372)
T KOG1239|consen 219 -------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL 279 (372)
T ss_pred -------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh
Confidence 7889999999999888887543221 12334457788999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q 012924 331 TNNVLSTAQQVWLRK 345 (453)
Q Consensus 331 tSnl~siiQ~~~lrk 345 (453)
|+.+|..++|.
T Consensus 280 ----~s~~~~~vlr~ 290 (372)
T KOG1239|consen 280 ----FSLVQGLVLRS 290 (372)
T ss_pred ----hHHHHHHHhHH
Confidence 99999999665
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2e-10 Score=119.25 Aligned_cols=239 Identities=23% Similarity=0.238 Sum_probs=207.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e 179 (453)
.+.|+.++....+..+..++......+.++.++.++...|+++.+...|+...+..+..-|...+|-...+...+.....
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57899999999998899898888888888889999999999999999999999999999999999999999888888655
Q ss_pred --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccc
Q 012924 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (453)
Q Consensus 180 --k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~ 257 (453)
.+|.++.++|+-.|++.+++|++..+-++..+..|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..++
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999997 5556678899999999988777888888888999999
Q ss_pred cCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHH
Q 012924 258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 336 (453)
Q Consensus 258 v~g~~~lgw~-d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~s 336 (453)
...+...||. +...+.+++..+.++.|+.++.|..+..+.+.+ ...++|-+..+.-...+.++..||+++++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888888998 888888888888899999998877444323222 4556777777888888999999999999999
Q ss_pred HHHHHHHH
Q 012924 337 TAQQVWLR 344 (453)
Q Consensus 337 iiQ~~~lr 344 (453)
-.|+....
T Consensus 238 ~~~~~~~~ 245 (372)
T KOG1239|consen 238 GAETGLSS 245 (372)
T ss_pred HHHhhhhc
Confidence 99987655
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.13 E-value=0.025 Score=54.45 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHcCCCCCCCch
Q 012924 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGCL 201 (453)
Q Consensus 130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~-----D~---ek~q~E~~kLYKk~gvnPl~GcL 201 (453)
+.-++|+++.+++=+.+- +..+-..-..||+++|-+++|.|++++. |. +|+|+++++......==.--.+-
T Consensus 45 ~p~lvilV~avi~gl~~~-i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 45 PPHLVILVAAVITGLYIT-ILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777777665432 3333445568999999999999998853 43 24444433332221100111345
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012924 202 PTLATIPVWIGLYQALSNV 220 (453)
Q Consensus 202 P~LiQiPIfiglf~~Lr~m 220 (453)
||+.++++.|-+|-=++..
T Consensus 124 PM~~~~v~tI~~F~Wl~~~ 142 (201)
T COG1422 124 PMLYISVLTIPFFAWLRWF 142 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777666666555544
No 18
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=79.25 E-value=1.4 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhhc
Q 012924 100 NGGWFGFISEAMEFVLKILKDGI 122 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l 122 (453)
++|||.||+.||.|+|++||.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999753
No 19
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=72.41 E-value=9.7 Score=35.21 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHhhc-CHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 012924 154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (453)
Q Consensus 154 ~kss~kMq~LqPel~~IqkKyk~-D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ 219 (453)
-+.+.++++++-+.++++++... ..++.+++.+++.++..=-....+-|+++.+.+++.+|..++.
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~ 109 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINY 109 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33445555566666666553332 2344444333333322100122233555555555555555544
No 20
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=62.95 E-value=25 Score=35.02 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHH---Hhhc-C-------HHHHHHHHHHHHHHcCCC
Q 012924 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ---RYAG-N-------QERIQLETSRLYRQAGVN 195 (453)
Q Consensus 127 lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~Iqk---Kyk~-D-------~ek~q~E~~kLYKk~gvn 195 (453)
.|..|+..+++-.++.=.+++=.+.++.+ .-.++.+|+.+ -|++ | .++.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD~el~~E~~~~~k~~--- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKDKELQKEYKKQMKAS--- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhCHHHHHHHHHHHHHH---
Confidence 46667777777777777777777766666 12233334311 1111 1 124566788877764
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhh
Q 012924 196 PLAGCLPTLATIPVWIGLYQALSNV 220 (453)
Q Consensus 196 Pl~GcLP~LiQiPIfiglf~~Lr~m 220 (453)
+++ ++-+||++.++..+++.
T Consensus 92 ----~~~-ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 ----MMN-LLILPIYIILFFLLYPY 111 (233)
T ss_pred ----HHH-HHHHHHHHHHHHHHHHh
Confidence 333 44588888777777653
No 21
>COG1422 Predicted membrane protein [Function unknown]
Probab=57.92 E-value=1.6e+02 Score=28.88 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcHHHHHHHH--------HhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 012924 154 VESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (453)
Q Consensus 154 ~kss~kMq~LqPel~~Iqk--------Kyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~ 222 (453)
.+-+..|++.|-|+.|-++ |.++.++++.+.++++.|.. ..|+. .-.++.||+|.=+++-+.....
T Consensus 75 ~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM~--~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 75 KELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPML--YISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHccCcc
Confidence 3445667788888888876 33344555555556666653 33552 3456789999999999998653
No 22
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=56.48 E-value=17 Score=34.49 Aligned_cols=37 Identities=32% Similarity=0.608 Sum_probs=21.7
Q ss_pred HHHHHHHHH-cCCCCCCCchHHH----------HHHHHHHHHHHHHHh
Q 012924 183 LETSRLYRQ-AGVNPLAGCLPTL----------ATIPVWIGLYQALSN 219 (453)
Q Consensus 183 ~E~~kLYKk-~gvnPl~GcLP~L----------iQiPIfiglf~~Lr~ 219 (453)
.++.+|||| +|++|-+|++|.- ++-=+|+.+|+.+.+
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 456799999 8999999998743 466677888877774
No 23
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=51.73 E-value=2.4e+02 Score=30.69 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 012924 132 GFAIILLTVIVKV 144 (453)
Q Consensus 132 glaIIllTliVRl 144 (453)
.++|++=++++-+
T Consensus 38 ~ltiiVRliLlPL 50 (429)
T PRK00247 38 GLVITVRAIIAPF 50 (429)
T ss_pred HHHHHHHHHHHHH
Confidence 4456665555544
No 24
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.37 E-value=1.1e+02 Score=32.51 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---CHH
Q 012924 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (453)
Q Consensus 133 laIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~---D~e 179 (453)
++++++.+++=++=++...++.....||.+ +|+++.||+ ||+
T Consensus 195 l~~~~~~liia~~D~~~qr~~~~k~lkMtK-----qEVKdE~K~sEGdPe 239 (363)
T COG1377 195 LAVLLLLLIVAAFDYFYQRFQYIKKLKMTK-----QEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcH-----HHHHHHHhhccCChh
Confidence 345555555555556777777777666654 677777874 776
No 25
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.94 E-value=70 Score=34.05 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=23.3
Q ss_pred CHHhHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 012924 297 DPAQKNTLLVFKFLPLMIGYFSLSVPSGLS 326 (453)
Q Consensus 297 ~p~qk~mk~m~~~mPlm~l~f~~~~PagL~ 326 (453)
+..+...++++..+.+.+++|+..+|.+..
T Consensus 250 ~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~ 279 (452)
T KOG3817|consen 250 PRSQTILMWTLQLIGLVLAYFSVQHPSAAI 279 (452)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 445556678889999999999999886543
No 26
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=38.06 E-value=1e+02 Score=32.12 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccccCCCc--chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc-
Q 012924 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPY--SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~--swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~- 176 (453)
..++++-++..|...|+-+|..+..+|+.. +.|..=++..|- ..--..+...+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~------------~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD------------ESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 577888899999999999998888777542 356555544433 22345777888888876554332
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCchH
Q 012924 177 NQERIQLETSRLYRQAGVNPLAGCLP 202 (453)
Q Consensus 177 D~ek~q~E~~kLYKk~gvnPl~GcLP 202 (453)
+-++.+.++.+|.|.-+++++.+-.+
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d~~ 310 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKNDVP 310 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCCCC
Confidence 33344566789999999999965443
No 27
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=35.76 E-value=64 Score=32.17 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHH
Q 012924 159 AMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPT 203 (453)
Q Consensus 159 kMq~LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~ 203 (453)
|++.+---+.++-++-.-|++++-..+++.|+++|+.|+.|.-|.
T Consensus 9 RI~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 9 RIEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 444444444555554233788888999999999999999997653
No 28
>PRK09108 type III secretion system protein HrcU; Validated
Probab=33.69 E-value=1.1e+02 Score=32.18 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHhhhccHHHHHHHHHHHhhcHHHHHHHHHhh---cCHH
Q 012924 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (453)
Q Consensus 144 llllPL~ikq~kss~kMq~LqPel~~IqkKyk---~D~e 179 (453)
++=+++..++.....||.. +|+++.|| |||+
T Consensus 201 ~~D~~~qr~~~~k~lkMSk-----qEvK~E~K~~EGdP~ 234 (353)
T PRK09108 201 AADWKIQRWLFIRDNRMSK-----DEVKREHKESEGDPH 234 (353)
T ss_pred HHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 4445666666666666654 67777777 4776
No 29
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=33.20 E-value=98 Score=34.95 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=18.3
Q ss_pred HhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---CHH
Q 012924 145 ATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (453)
Q Consensus 145 lllPL~ikq~kss~kMq~LqPel~~IqkKyk~---D~e 179 (453)
+=+++..++.....||.+ +|++++||+ |||
T Consensus 463 ~D~~~q~~~~~k~lkMsk-----qEvK~E~Ke~EGdP~ 495 (609)
T PRK12772 463 ADYVYQKYQYNKDLRMTK-----QEVKEEYKQDEGDPQ 495 (609)
T ss_pred HHHHHHHHHHHHhCCCCH-----HHHHHHHHhccCCHH
Confidence 335555666665555543 677777774 776
No 30
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=32.82 E-value=84 Score=33.01 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---CHH
Q 012924 135 IILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (453)
Q Consensus 135 IIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~---D~e 179 (453)
+++..+++=++=++...++.....||.+ +|+++.||+ ||+
T Consensus 190 ~~~~~~via~~D~~~qr~~~~k~lrMsk-----qEVKdE~K~~EGdP~ 232 (347)
T TIGR00328 190 VLLLLLVIAVFDYFFQRWQYIKSLKMTK-----QEVKDELKQSEGDPE 232 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHhccCCHH
Confidence 3333344445556777777777666654 677777774 776
No 31
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=32.29 E-value=77 Score=30.63 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHH
Q 012924 130 SYGFAIILLTVIVKVA 145 (453)
Q Consensus 130 swglaIIllTliVRll 145 (453)
+|||-|++.+|++-++
T Consensus 35 ~yGWyil~~~I~ly~l 50 (190)
T PF06936_consen 35 SYGWYILFGCILLYLL 50 (190)
T ss_dssp ----------------
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4666666666655443
No 32
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=31.44 E-value=1.3e+02 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=19.0
Q ss_pred HHhhhccHHHHHHHHHHHhhcHHHHHHHHHhh---cCHH
Q 012924 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (453)
Q Consensus 144 llllPL~ikq~kss~kMq~LqPel~~IqkKyk---~D~e 179 (453)
++=+++..++.....||.+ +|+++.|| |||+
T Consensus 199 ~~D~~~qr~~~~k~lkMsk-----qEvKdE~Ke~EGdP~ 232 (349)
T PRK12721 199 ILDYSFQRYKIMKQLKMSK-----DDVKQEYKDSEGDPE 232 (349)
T ss_pred HHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 3445556666666656643 67777777 4876
No 33
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=1.5e+02 Score=31.64 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHH--HHHhhc--CHH--HHHHHHHHHHHHcCCCCCCC
Q 012924 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQE--RIQLETSRLYRQAGVNPLAG 199 (453)
Q Consensus 131 wglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~I--qkKyk~--D~e--k~q~E~~kLYKk~gvnPl~G 199 (453)
...|+|+..++...+-+|+.+..+..-+--+..+|---++ ++.|.. +.| +.-.|..+..++-++.+|+-
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkv 351 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKV 351 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence 4557788888888999999876544322222233322222 345543 333 33467889999999998863
No 34
>PRK08156 type III secretion system protein SpaS; Validated
Probab=29.70 E-value=1.4e+02 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=18.6
Q ss_pred HHhhhccHHHHHHHHHHHhhcHHHHHHHHHhh---cCHH
Q 012924 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (453)
Q Consensus 144 llllPL~ikq~kss~kMq~LqPel~~IqkKyk---~D~e 179 (453)
++=+++..++.....||.+ +|+++.|| |||+
T Consensus 194 ~~D~~~Qr~~~~k~lkMSk-----qEvKdE~Ke~EGdP~ 227 (361)
T PRK08156 194 ILDFIAEYFLHMKDMKMDK-----QEVKREYKEQEGNPE 227 (361)
T ss_pred HHHHHHHHHHHHHHCCCCH-----HHHHHHHHhccCCHH
Confidence 3335555566555555543 67777777 4876
No 35
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=29.49 E-value=97 Score=29.45 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=43.8
Q ss_pred HHHHhhcHHHHHHHHHhhcCHHHHH-HHHHHHHH----------HcCCCCCC---CchHHHHHHHHHHHHHHHHH
Q 012924 158 LAMQNLQPKIKAIQQRYAGNQERIQ-LETSRLYR----------QAGVNPLA---GCLPTLATIPVWIGLYQALS 218 (453)
Q Consensus 158 ~kMq~LqPel~~IqkKyk~D~ek~q-~E~~kLYK----------k~gvnPl~---GcLP~LiQiPIfiglf~~Lr 218 (453)
.+..++++++++|++|-|+|-.++. +|..+||+ +.+.|=++ ||...|+=+-+++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 4567789999999999998855543 66777774 22333344 55677778888888888887
No 36
>PRK06298 type III secretion system protein; Validated
Probab=28.44 E-value=1.5e+02 Score=31.38 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=18.0
Q ss_pred HhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---CHH
Q 012924 145 ATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (453)
Q Consensus 145 lllPL~ikq~kss~kMq~LqPel~~IqkKyk~---D~e 179 (453)
+=+++..++.....||. -+|+++.||+ ||+
T Consensus 201 ~D~~~qr~~~~k~lkMS-----kqEvKdE~K~~EGdP~ 233 (356)
T PRK06298 201 LDLVYQRHNFAKELKME-----KFEVKQEFKDTEGNPE 233 (356)
T ss_pred HHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 33555555555555554 3677777774 776
No 37
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.43 E-value=1.5e+02 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=17.0
Q ss_pred hhccHHHHHHHHHHHhhcHHHHHHHHHhhc---CHH
Q 012924 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (453)
Q Consensus 147 lPL~ikq~kss~kMq~LqPel~~IqkKyk~---D~e 179 (453)
+++..++.....||. -+|+++.||+ ||+
T Consensus 209 ~~~qr~~~~k~lkMs-----kqEVKdE~Ke~EGdP~ 239 (359)
T PRK05702 209 VPFQRWQYLKKLKMT-----KQEVKDEHKQSEGDPE 239 (359)
T ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHhccCCHH
Confidence 455555555555554 3677777774 876
No 38
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.69 E-value=1.7e+02 Score=31.21 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=16.1
Q ss_pred hhccHHHHHHHHHHHhhcHHHHHHHHHhh---cCHH
Q 012924 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYA---GNQE 179 (453)
Q Consensus 147 lPL~ikq~kss~kMq~LqPel~~IqkKyk---~D~e 179 (453)
+++..++.....||. -+|+++.|| |||+
T Consensus 209 ~~~qr~~~~k~lkMS-----kqEvKdE~K~~EGdP~ 239 (386)
T PRK12468 209 VFYQITSHIKKLRMT-----KQDIRDEFKNQEGDPH 239 (386)
T ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 444555555555554 366677776 4875
No 39
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=25.64 E-value=97 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.5
Q ss_pred hcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCC
Q 012924 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (453)
Q Consensus 163 LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~ 198 (453)
+-|+++++++.|.+-.+.++....++-+++|++.+.
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999998888888889999999986553
No 40
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.47 E-value=36 Score=33.98 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=10.3
Q ss_pred cccCCCCCCCCccc
Q 012924 404 MNSASDSEGESDGE 417 (453)
Q Consensus 404 ~~~~~~~~~~~~~~ 417 (453)
++.-+.|++++|+|
T Consensus 219 VE~GTas~~~vd~e 232 (261)
T KOG1631|consen 219 VEVGTASKDAVDDE 232 (261)
T ss_pred EeecccCccccccc
Confidence 45556677899998
No 41
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=24.48 E-value=8.9e+02 Score=25.94 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHhhhHHHHHHHH
Q 012924 271 AYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSL--SVPSGLSIYWFTNNVLSTAQQV 341 (453)
Q Consensus 271 py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~--~~PagL~LYWitSnl~siiQ~~ 341 (453)
.|+++-.++.-+.+....+.. +.-+.+...|.-++|+.+..++. ..-+|..+|=+.=-+..+.+++
T Consensus 133 ~Ylvli~i~l~sF~~~~~~a~-----~~I~~m~~FM~al~P~~~~lva~sGg~~SAa~f~p~il~~i~~~~~l 200 (381)
T TIGR02829 133 CYMVLIIIALKSFHVAMSYAK-----EAIESMVDFMLALLPLLLALLASSGGVTSAAFFDPVILFSINTTGKV 200 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 466665555554444443321 22233344566678887655443 3455666664444444444444
No 42
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=22.18 E-value=2.4e+02 Score=28.80 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 012924 169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN 219 (453)
Q Consensus 169 ~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ 219 (453)
.++|-|++|+|++++.+++=..=+|.+|.-+ |+..|+--++.+
T Consensus 39 ~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~~--------~~I~Gi~~amEE 81 (271)
T TIGR00828 39 AIKKLYPDDKAGRSAALKRHLEFFNTHPNLV--------GPIMGVTAAMEE 81 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhh--------hHHHHHHHHHHH
Confidence 3455677887776665555444478887633 344555555543
No 43
>PRK12722 transcriptional activator FlhC; Provisional
Probab=21.73 E-value=4.5e+02 Score=25.46 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=27.3
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 012924 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (453)
Q Consensus 183 ~E~~kLYKk~-gvnPl~GcLP~----------LiQiPIfiglf~~Lr~ 219 (453)
.++.+||||- |++|=+|.+|. =++-=+|+.+|+.+..
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLK 85 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHH
Confidence 3467899998 99999999882 2455577777776664
No 44
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=21.46 E-value=2.4e+02 Score=28.68 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCCC
Q 012924 169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAG 199 (453)
Q Consensus 169 ~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~G 199 (453)
.|+|-|++|+|++++.+++=.+=+|++|.-+
T Consensus 41 ~L~KlY~~~~e~~~~Al~rHl~ffNT~p~~~ 71 (263)
T PRK09855 41 ILKKIYKDDKPGLSAAMKDNLEFINTHPNLV 71 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhh
Confidence 3455678888887776666555678888644
No 45
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=6.6e+02 Score=23.17 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHH
Q 012924 132 GFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173 (453)
Q Consensus 132 glaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkK 173 (453)
.+.|++..|++|+ +-.+.+.+.+ +|-||++.+.+
T Consensus 16 vvGi~IG~li~Rl-----t~~~~k~q~~---~q~ELe~~K~~ 49 (138)
T COG3105 16 VVGIIIGALIARL-----TNRKLKQQQK---LQYELEKVKAQ 49 (138)
T ss_pred HHHHHHHHHHHHH-----cchhhhhHHH---HHHHHHHHHHH
Confidence 3456666666665 3333333332 44455555543
No 46
>PRK12860 transcriptional activator FlhC; Provisional
Probab=20.83 E-value=4.3e+02 Score=25.66 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=28.1
Q ss_pred HHHHHHHHHc-CCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 012924 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (453)
Q Consensus 183 ~E~~kLYKk~-gvnPl~GcLP~----------LiQiPIfiglf~~Lr~ 219 (453)
.++.+||||- |++|=+|.+|. =++-=+|+.+|+.+.+
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 4578999998 99999999885 1455677777777664
No 47
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=20.78 E-value=9.4e+02 Score=25.53 Aligned_cols=116 Identities=15% Similarity=0.186 Sum_probs=68.3
Q ss_pred CCCc-hHHHHHHHHHHHHHHHhhcc-ccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcC
Q 012924 100 NGGW-FGFISEAMEFVLKILKDGID-AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177 (453)
Q Consensus 100 ~~gw-f~~i~~p~e~vL~~i~~~l~-~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D 177 (453)
++-| +|++...+.+-+.++..++. ..++..++|++-++..+++=+++==+.+-- +.|...-+-+|++||.+.+.=
T Consensus 96 ~~~~~~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl---~~k~~~s~~km~~lqPel~~I 172 (357)
T PRK02201 96 SWTWKYGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLI---TFKSTFNQEKQEELQGKKAKI 172 (357)
T ss_pred eeeeccchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHH
Confidence 3445 57677777777777766653 124566789887777766655543333332 233333444666677666553
Q ss_pred HHHH----------HHHHHHHHHHcCCCCCCCchHHHHHHHHH--HHHHHHHHhhh
Q 012924 178 QERI----------QLETSRLYRQAGVNPLAGCLPTLATIPVW--IGLYQALSNVA 221 (453)
Q Consensus 178 ~ek~----------q~E~~kLYKk~gvnPl~GcLP~LiQiPIf--iglf~~Lr~ma 221 (453)
++|+ ++..++.++-|.=+ ||=|+---+|++ +-+|.++.++.
T Consensus 173 q~Kyk~~~~d~~~~~k~q~e~~~Lykk~---ginP~~gclP~LiQ~Pif~aly~vl 225 (357)
T PRK02201 173 DAKYKDYKKDKQMKQRKQQEIQELYKKH---NISPFSPFVQMFVTLPIFIAVYRVV 225 (357)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 22234555555433 787777677877 67788888774
Done!