Query 012924
Match_columns 453
No_of_seqs 222 out of 1424
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blc_A Inner membrane protein 30.8 1.4 4.7E-05 43.8 -6.4 22 100-121 305-326 (330)
2 1e91_A Paired amphipathic heli 20.6 1.1E+02 0.0036 24.5 4.2 31 166-196 13-45 (85)
3 4g9j_C Synthetic peptide, seri 19.3 26 0.00089 21.9 0.2 7 445-451 3-9 (26)
4 1g1e_B SIN3A; four-helix bundl 17.8 1.1E+02 0.0038 24.6 3.8 28 166-193 16-45 (89)
5 3ukx_C Bimax2 peptide; arm rep 16.4 30 0.001 22.0 -0.0 10 442-451 3-12 (28)
6 2cr7_A Paired amphipathic heli 15.7 1.3E+02 0.0044 23.7 3.6 30 166-195 16-47 (80)
7 1v54_D Cytochrome C oxidase su 15.0 54 0.0018 29.2 1.3 31 161-191 31-62 (147)
8 2czy_A Paired amphipathic heli 13.1 1.8E+02 0.0062 22.6 3.7 30 166-195 10-41 (77)
9 2f05_A Paired amphipathic heli 12.7 1.6E+02 0.0056 24.5 3.5 31 166-196 13-45 (105)
10 3iyz_A Aquaporin-4; water tran 11.9 82 0.0028 31.7 1.7 27 325-351 247-273 (340)
No 1
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=30.77 E-value=1.4 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHHHHHHHhh
Q 012924 100 NGGWFGFISEAMEFVLKILKDG 121 (453)
Q Consensus 100 ~~gwf~~i~~p~e~vL~~i~~~ 121 (453)
++|||.||+.||.|+|++||.+
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC----
T ss_pred cccCHHHHHHHHHHHHHHhhhh
Confidence 4899999999999999999864
No 2
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.56 E-value=1.1e+02 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~gvnP 196 (453)
=+++|++++.+++++.+ .++++-|++..++.
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~ 45 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHccccc
Confidence 47889999999999876 57899999988763
No 3
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=19.30 E-value=26 Score=21.92 Aligned_cols=7 Identities=86% Similarity=1.146 Sum_probs=3.0
Q ss_pred chhhhcc
Q 012924 445 KRSKRKR 451 (453)
Q Consensus 445 ~~~~~~~ 451 (453)
||-||||
T Consensus 3 krpkrkr 9 (26)
T 4g9j_C 3 KRPKRKR 9 (26)
T ss_pred ccccccc
Confidence 4444443
No 4
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=17.82 E-value=1.1e+02 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAG 193 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~g 193 (453)
-+++|+++|.+++++.+ .++++-|++..
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 46889999999998776 46778887653
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=16.39 E-value=30 Score=21.98 Aligned_cols=10 Identities=60% Similarity=1.006 Sum_probs=3.7
Q ss_pred cccchhhhcc
Q 012924 442 RKSKRSKRKR 451 (453)
Q Consensus 442 ~~~~~~~~~~ 451 (453)
||.+|.||||
T Consensus 3 rrrrrrkrkr 12 (28)
T 3ukx_C 3 RRRRRRKRKR 12 (28)
T ss_dssp ---CCCCCCC
T ss_pred hhHHHHHhhc
Confidence 3444555554
No 6
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=15.65 E-value=1.3e+02 Score=23.69 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~gvn 195 (453)
=++++++++.++++... .++|+-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 36788899998888766 4788888877654
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=14.99 E-value=54 Score=29.23 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=23.7
Q ss_pred HhhcHHHHHHHHHhhcCHHHHH-HHHHHHHHH
Q 012924 161 QNLQPKIKAIQQRYAGNQERIQ-LETSRLYRQ 191 (453)
Q Consensus 161 q~LqPel~~IqkKyk~D~ek~q-~E~~kLYKk 191 (453)
+.|.|++.+|++|-|+|=.++. +|..+||+=
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 3468999999999999855543 667778864
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=13.09 E-value=1.8e+02 Score=22.63 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~gvn 195 (453)
=++++++++.+++++.. .++|+-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 46788899999888766 4678888876554
No 9
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=12.69 E-value=1.6e+02 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~gvnP 196 (453)
-+++|+.+|.++++..+ .++++-|++..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 47889999999999876 57899999987764
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=11.86 E-value=82 Score=31.67 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=14.4
Q ss_pred hHHHHHhhhHHHHHHHHHHHHhcCCCC
Q 012924 325 LSIYWFTNNVLSTAQQVWLRKLGGAKP 351 (453)
Q Consensus 325 L~LYWitSnl~siiQ~~~lrk~~~~~~ 351 (453)
.-+||+.--+=.++=.++.+.++.+++
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p~~ 273 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCPDV 273 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence 457887655444444445555544333
Done!