Query 012924
Match_columns 453
No_of_seqs 222 out of 1424
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 18:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012924.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012924hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 28.2 32 0.0023 28.8 4.9 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 14.0 24 0.0017 29.3 0.8 32 160-191 27-59 (144)
3 d1s5qb_ a.59.1.1 (B:) Sin3A {M 9.5 1.3E+02 0.0098 22.0 3.9 27 166-192 16-44 (89)
4 d2f05a1 a.59.1.1 (A:1-85) Sin3 9.0 1.5E+02 0.011 21.4 4.0 31 166-196 13-45 (85)
5 d1ryka_ a.60.11.1 (A:) Hypothe 8.3 1.4E+02 0.011 21.0 3.5 27 167-193 40-66 (69)
6 d1lvaa3 a.4.5.35 (A:511-574) C 8.1 97 0.0071 21.4 2.3 21 177-197 4-24 (64)
7 d1u5ta1 a.4.5.54 (A:20-164) Va 7.1 2.2E+02 0.016 23.0 4.5 41 157-198 14-58 (145)
8 d2e50a1 d.305.1.1 (A:1-222) Pr 6.4 2.7E+02 0.02 23.5 5.1 25 153-177 28-52 (222)
9 d2gf5a1 a.77.1.2 (A:89-191) FA 6.0 3E+02 0.022 19.8 4.5 38 158-195 29-67 (103)
10 d1j8ba_ d.222.1.1 (A:) Hypothe 5.8 1.5E+02 0.011 21.8 2.5 18 158-175 6-23 (92)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=28.22 E-value=32 Score=28.80 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHH-cCCCCCCCchHH----------HHHHHHHHHHHHHHHh
Q 012924 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (453)
Q Consensus 183 ~E~~kLYKk-~gvnPl~GcLP~----------LiQiPIfiglf~~Lr~ 219 (453)
.++.+|||| +|.+|-+|.+|. -++--+|+.+|+.+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 457899988 899999998763 2466678888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.96 E-value=24 Score=29.30 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHhhcHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 012924 160 MQNLQPKIKAIQQRYAGNQERI-QLETSRLYRQ 191 (453)
Q Consensus 160 Mq~LqPel~~IqkKyk~D~ek~-q~E~~kLYKk 191 (453)
.+++-|++.+|++|-|+|-.++ .+|..+||+-
T Consensus 27 ~~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 27 VKNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 3578899999999999985554 3677888864
No 3
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.45 E-value=1.3e+02 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHc
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQA 192 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~ 192 (453)
=++++++++.+++++.. .++++-|++.
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f~~~ 44 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKE 44 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 36788999998888776 4677777764
No 4
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.04 E-value=1.5e+02 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 012924 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (453)
Q Consensus 166 el~~IqkKyk~D~ek~q--~E~~kLYKk~gvnP 196 (453)
=++++++++.+++++.+ .+++.-|++.-+..
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 46788999998998776 46788888876653
No 5
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=8.31 E-value=1.4e+02 Score=21.03 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHcC
Q 012924 167 IKAIQQRYAGNQERIQLETSRLYRQAG 193 (453)
Q Consensus 167 l~~IqkKyk~D~ek~q~E~~kLYKk~g 193 (453)
.-++|++|..-++...++..++..+|.
T Consensus 40 ~Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 40 VGKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 346788998888899999999988875
No 6
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.08 E-value=97 Score=21.38 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCC
Q 012924 177 NQERIQLETSRLYRQAGVNPL 197 (453)
Q Consensus 177 D~ek~q~E~~kLYKk~gvnPl 197 (453)
|++++.+.+..+|++.|+.|.
T Consensus 4 ~q~~l~~~I~~~~~~~g~~PP 24 (64)
T d1lvaa3 4 TQKKLLKDLEDKYRVSRWQPP 24 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 566788889999999999985
No 7
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.10 E-value=2.2e+02 Score=23.02 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHhhcHHHHHHHHHhhc----CHHHHHHHHHHHHHHcCCCCCC
Q 012924 157 TLAMQNLQPKIKAIQQRYAG----NQERIQLETSRLYRQAGVNPLA 198 (453)
Q Consensus 157 s~kMq~LqPel~~IqkKyk~----D~ek~q~E~~kLYKk~gvnPl~ 198 (453)
+..++..|-.|.+.-.+|++ || ..+.+.+++...-||.|++
T Consensus 14 ~~QL~vF~~~L~~FA~kH~~eI~~np-~FR~~F~~MC~~iGVDPLa 58 (145)
T d1u5ta1 14 RDQLMVFQERLVEFAKKHNSELQASP-EFRSKFMHMCSSIGIDPLS 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTTCH-HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCH-HHHHHHHHHHHHhCCChhh
Confidence 35566788888888888886 45 4556788999999999975
No 8
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.38 E-value=2.7e+02 Score=23.53 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHhhcC
Q 012924 153 QVESTLAMQNLQPKIKAIQQRYAGN 177 (453)
Q Consensus 153 q~kss~kMq~LqPel~~IqkKyk~D 177 (453)
+++....++.+|-++.++.+++...
T Consensus 28 ~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 28 QQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777888888887766543
No 9
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=3e+02 Score=19.83 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHhhcHHHHHHHHHhhcC-HHHHHHHHHHHHHHcCCC
Q 012924 158 LAMQNLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVN 195 (453)
Q Consensus 158 ~kMq~LqPel~~IqkKyk~D-~ek~q~E~~kLYKk~gvn 195 (453)
+++..=..+|+.|+.+|.+| +++..+-+..-++++|-+
T Consensus 29 ~~Lgl~~~~I~~I~~~~~~~~~e~~~~mL~~W~~~~g~~ 67 (103)
T d2gf5a1 29 RQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKEN 67 (103)
T ss_dssp HHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTT
T ss_pred HHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 33333456899999999876 566655566777777755
No 10
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=5.79 E-value=1.5e+02 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=12.6
Q ss_pred HHHHhhcHHHHHHHHHhh
Q 012924 158 LAMQNLQPKIKAIQQRYA 175 (453)
Q Consensus 158 ~kMq~LqPel~~IqkKyk 175 (453)
.+++.+|-+|+++|++.+
T Consensus 6 kqaq~mq~~m~~~q~eL~ 23 (92)
T d1j8ba_ 6 KQAQQMQEKMQKMQEEIA 23 (92)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456667777888877764
Done!