BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012925
(453 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
+DFD Y +LG+ ++ Q+ IK AY+ L + HPD G D I +++AY +LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74
Query: 106 RLAYD 110
R YD
Sbjct: 75 RTNYD 79
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 52 YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDK 111
YD+LG+ ++ Q ++K AYR L + HPD + G I ++AY VLSD R YDK
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQI-SQAYEVLSDAKKRELYDK 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y +LG+ + D IKTAYR L ++ HPD++ + L EA+ VL D R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 109 YDK 111
YD+
Sbjct: 89 YDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y ++G+ + D IKTAYR L ++ HPD++ + + EA+ VLSD R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 109 YDK 111
YD+
Sbjct: 66 YDQ 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYD 110
LYDLLG+ S+++ ++K YR + HPD I +EA+ +L+DP R YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEI-SEAFEILNDPQKREIYD 68
Query: 111 K 111
+
Sbjct: 69 Q 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-ILNEAYSVLSDPNSRLA 108
D Y++LG+ + +K AYR L + HPD + G A + AY+VLS+P R
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 109 YDK 111
YD+
Sbjct: 68 YDQ 70
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
D Y++LG+ ++++ +I+ AY+ L + HPD A + EAY VL+D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
AYD+
Sbjct: 64 AYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
D Y++LG+ ++++ +I+ AY+ L + HPD A + EAY VL+D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
AYD+
Sbjct: 64 AYDQ 67
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 52 YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLAYD 110
YD+LG+ S+ + QIK A+ L + HPD S + + EAY LSD N R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 62 DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
DQS+++ YR LQ + HPD+A G + + LN+AY L DP R Y
Sbjct: 31 DQSRLRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 62 DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
DQS+++ YR LQ + HPD+A G + + LN+AY L DP R Y
Sbjct: 23 DQSRLRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRL 107
D Y +LG+ ++ Q +IK AY L K+ HPD + L EAY VLSD R
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 108 AYD 110
YD
Sbjct: 68 QYD 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMA---IILNEAYSVLSDPNSR 106
+ Y++LG+ +S+ IK AYR L R HPD + +++EAY VLSD R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 107 LAYDK 111
YD+
Sbjct: 70 SLYDR 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
D Y++LG+ ++++ +I+ AY+ L + HPD A + EAY VL+D R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 108 AYDK 111
AYD+
Sbjct: 64 AYDQ 67
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y LG+ + +IK AYR R HPD G + + EAY VLSDP R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 109 YDKEQAKTAGLRG 121
+D+ + GL+G
Sbjct: 64 FDRYGEE--GLKG 74
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD--IAGSAGHDMAIILNEAYSVLSDPNS 105
D + Y LLG+ ++ +I+ A++ L + HPD H + +N AY VL D +
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 106 RLAYDK 111
R YDK
Sbjct: 80 RKKYDK 85
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 52 YDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDK 111
YD+LG+ + +++K AYR + + HPD G + +++AY VLSD R YD+
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
+ Y LLG+ ++ +I+ A++ L + HPD H + +N AY VL D + R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 108 AYDKEQAK 115
YDK K
Sbjct: 63 KYDKYGEK 70
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSA-GHDMAIILNEAYSVLSDPNSRLA 108
LYDLLG+ S++ Q+QIK AY HPD +GSA + +++AY VL R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 109 YDKEQAKTAGLRG 121
YD+ LRG
Sbjct: 79 YDRGLLSDEDLRG 91
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRLA 108
LY +LG+D ++ IK +YR L + HPD D +N A+++L+D R
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 109 YDK 111
YDK
Sbjct: 79 YDK 81
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGH-------DMAIILNEAYSVLS 101
F+L+ L I D S + + +R LQKR HPD +A A +N+AY L
Sbjct: 7 FELFGL-PIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLK 65
Query: 102 DPNSRLAY 109
DP R Y
Sbjct: 66 DPLRRAEY 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILN---EAYSVLSDPNSR 106
D Y++L + + IK AYR L + HPD + EAY VLSD R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 107 LAYDK 111
YD+
Sbjct: 70 DIYDR 74
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII--LNEAYSVLSDPNSRL 107
D Y LLG D S QI +++ CHPD + L +A +L++ SR
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 108 AYD 110
YD
Sbjct: 81 RYD 83
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD-----IAGSAGHDMAIILNEAYSVLSDPN 104
D Y +LG+ ++ + +I AYR L + HPD I + A VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 105 SRLAYD 110
R +D
Sbjct: 443 XRKKFD 448
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 52 YDLLGIDSSSDQSQIKTAYRMLQKRCHPD-------IAGSAGHDMAIILNEAYSVLSDPN 104
Y++L + S+ IK AYR + HPD A ++A EAY VLSD +
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVA----EAYEVLSDKH 60
Query: 105 SRLAYDKEQAKTAGLRGYTG 124
R YD+ G G TG
Sbjct: 61 KREIYDR-----YGREGLTG 75
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPD-----IAGSAGHDMAIILNEAYSVLSDPN 104
D Y +LG+ ++ + +I AYR L + HPD I + A VLSDP
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 105 SRLAYD 110
R +D
Sbjct: 443 MRKKFD 448
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI------AGSAGHDMA--IILNEAYSVLS 101
D Y +LG D S++ S +K Y+ L HPD AG+ M I +++A+ +L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 102 DPNSRLAYD 110
+ ++ YD
Sbjct: 77 NEETKKKYD 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 52 YDLLGIDSSS-DQSQIKTAYRMLQKRCHPDIAGSAGHDMAI-----ILNEAYSVLSDPNS 105
YD+L ++ D+ ++ AYR L ++ HPD + + ++ AY L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 106 RLAYD 110
+ YD
Sbjct: 78 KTNYD 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAI--ILNEAYSVLSD 102
D +D+LG+ + + ++ AYR L HPD + G + A ++N ++L +
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI------AGSAGHDMA--IILNEAYSVLS 101
D Y +LG D S++ S +K Y+ L HPD AG+ + I +++A+ +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 102 DPNSRLAYDKEQAK 115
+ ++ YD ++ +
Sbjct: 71 NEETKREYDLQRCE 84
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 247 KKAAGKDTDTNWEARLSAIQAIRSISNWLYWQLPNA-ESYQNLTRSKQKLKEPNIKKLLD 305
K A KD NWE AIQ + N PNA E + LTR Q + N+KK +
Sbjct: 374 KSALQKDLSENWEVLAEAIQTVXRRYNE-----PNAYEQLKELTRG-QXIDAENLKKFIK 427
Query: 306 AAAARKQA 313
+ ++A
Sbjct: 428 TLSIPEEA 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,012,651
Number of Sequences: 62578
Number of extensions: 501143
Number of successful extensions: 1465
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1415
Number of HSP's gapped (non-prelim): 32
length of query: 453
length of database: 14,973,337
effective HSP length: 102
effective length of query: 351
effective length of database: 8,590,381
effective search space: 3015223731
effective search space used: 3015223731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)