BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012925
(453 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HNW7|DNAJ_STAEQ Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=dnaJ PE=3 SV=1
Length = 373
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG++ S+ + +IK AYR L K+ HPDI G D ++EAY VLSD N R+
Sbjct: 5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVN 64
Query: 109 YDK----------EQAKTAGLRGYTGKPIYSVWFGSESEQR 139
YD+ G + I+S +FG S QR
Sbjct: 65 YDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQR 105
>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3
SV=1
Length = 384
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
DLY++LG+D ++ Q +IK AYR L K+ HPD+ +NEAY +LSDP R
Sbjct: 5 DLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 64
Query: 108 AYDK 111
YD+
Sbjct: 65 QYDQ 68
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG++ S+ + +IK AYR L K+ HPDI G D ++EAY VLSD N R
Sbjct: 5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64
Query: 109 YDK----------EQAKTAGLRGYTGKPIYSVWFGSESEQR 139
YD+ G + I+S +FG S QR
Sbjct: 65 YDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQR 105
>sp|Q98PI9|DNAJ_MYCPU Chaperone protein DnaJ OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=dnaJ PE=3 SV=2
Length = 377
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDP 103
+N D Y +LGID S+++ +IK AYR L HPD + S + + +NEAY VLS+P
Sbjct: 1 MNKKEDYYKILGIDKSANEKEIKKAYRKLAMEHHPDRSSSKESEAKMREINEAYEVLSNP 60
Query: 104 NSRLAYDK---EQAKTAGLRGYT 123
+ YDK E A G G+
Sbjct: 61 EKKAIYDKYGHEAANNPGFNGFN 83
>sp|P47442|DNAJM_MYCGE DnaJ-like protein MG200 OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=MG200 PE=1 SV=1
Length = 601
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII---LNEAYSVLSDPNSR 106
D Y++LGI +DQS+IK A+R L K+ HPD + D A I +NEA VLS+P R
Sbjct: 7 DYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAP--DAAKIFAEINEANDVLSNPKKR 64
Query: 107 LAYDKEQAKTAGLRGYTGKPIYS 129
YDK G G G+P ++
Sbjct: 65 ANYDK-----YGFDGVDGEPAFN 82
>sp|Q0AKB3|DNAJ_MARMM Chaperone protein DnaJ OS=Maricaulis maris (strain MCS10) GN=dnaJ
PE=3 SV=1
Length = 395
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAI-ILNEAYSVLSDPNSRL 107
D Y++LG+D ++D+ +K+AYR + HPD G A + ++ EAYSVLSDPN R
Sbjct: 5 DFYEVLGVDKTADEKTLKSAYRKQAMKYHPDRNPGDAEAEAQFKVVGEAYSVLSDPNKRA 64
Query: 108 AYDK 111
AYD+
Sbjct: 65 AYDR 68
>sp|B8HLD2|DNAJ_CYAP4 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=dnaJ PE=3 SV=1
Length = 374
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
M D YD+LG+ + Q +K AYR L ++ HPD+ AG + +N AY VLSDP +
Sbjct: 1 MARDYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDR 66
>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q6G8Y8|DNAJ_STAAS Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|P63971|DNAJ_STAAN Chaperone protein DnaJ OS=Staphylococcus aureus (strain N315)
GN=dnaJ PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|P63970|DNAJ_STAAM Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dnaJ PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|A6QHC2|DNAJ_STAAE Chaperone protein DnaJ OS=Staphylococcus aureus (strain Newman)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q5HFI1|DNAJ_STAAC Chaperone protein DnaJ OS=Staphylococcus aureus (strain COL)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|A5ITA7|DNAJ_STAA9 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH9)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q2FXZ3|DNAJ_STAA8 Chaperone protein DnaJ OS=Staphylococcus aureus (strain NCTC 8325)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q2FGE4|DNAJ_STAA3 Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|A6U251|DNAJ_STAA2 Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH1)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|A7X2Y0|DNAJ_STAA1 Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q6GGC1|DNAJ_STAAR Chaperone protein DnaJ OS=Staphylococcus aureus (strain MRSA252)
GN=dnaJ PE=3 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI + + +IK AYR L K+ HPDI G D ++EAY VLSD N R +
Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRAS 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1
Length = 377
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=dnaJ PE=3 SV=1
Length = 376
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a
(strain 10403S) GN=dnaJ PE=3 SV=1
Length = 377
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=dnaJ PE=3 SV=1
Length = 376
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|B7JY68|DNAJ_CYAP8 Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 8801) GN=dnaJ
PE=3 SV=1
Length = 375
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
M D Y+ LG+D ++ + IK AYR L ++ HPDI AG D +N AY VLS+P +
Sbjct: 1 MSGDYYETLGVDRNASKEDIKRAYRRLARKYHPDINKEAGAEDRFKEINRAYEVLSEPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDQ 66
>sp|Q7VEJ6|DNAJ_PROMA Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=dnaJ PE=3 SV=1
Length = 378
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D YD LG++ ++D +K AYR L ++ HPDI AG + + AY VL DP R
Sbjct: 3 DFYDTLGVNRNADADSLKRAYRRLARQYHPDINKEAGAEERFKEIGRAYEVLGDPEKRAR 62
Query: 109 YDKEQAKTAGLRGYTGKP 126
YD Q AGL G G P
Sbjct: 63 YD--QFGEAGLGGSAGMP 78
>sp|Q49Y21|DNAJ_STAS1 Chaperone protein DnaJ OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ
PE=3 SV=1
Length = 378
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG+ S+ + +IK AYR L K+ HPDI G D ++EAY VLSD N R
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain
BP-1) GN=dnaJ PE=3 SV=2
Length = 373
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
M D Y++LG+ S+D ++K AYR L ++ HPD+ G + +N AY VLSDP +
Sbjct: 1 MARDFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQA 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RANYDR 66
>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=dnaJ PE=3 SV=1
Length = 376
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG+ S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=dnaJ PE=3 SV=1
Length = 376
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG+ S+ +IK AYR L K+ HPDI AG D ++EAY LSDP R
Sbjct: 5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana
GN=ATJ11 PE=1 SV=2
Length = 161
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-----SAGHDMAIILNEAYSVLSDPNS 105
LYD+L + + IK+AYR L + CHPD+AG S+ D + ++ AY LSDP
Sbjct: 66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEK 125
Query: 106 RLAYDKEQAK--------TAGLRGYTGK 125
R YD+ + T+GL Y G+
Sbjct: 126 RSVYDRRMLRRSRPLTVGTSGLGSYVGR 153
>sp|Q87VN8|CBPA_PSESM Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=cbpA PE=3 SV=1
Length = 314
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 47 MDF-DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPN 104
MDF D Y +L ++ ++D IKTAYR L ++ HPD++ AG D +EAY VLS P
Sbjct: 1 MDFKDYYKILDVEPAADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPE 60
Query: 105 SRLAYDK 111
R YD+
Sbjct: 61 KRAEYDE 67
>sp|Q8G6C6|DNAJ_BIFLO Chaperone protein DnaJ OS=Bifidobacterium longum (strain NCC 2705)
GN=dnaJ PE=3 SV=1
Length = 381
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
D Y+ LG++ + +IK AYR L ++ HPDIAG D +N AY VLS+P+ R Y
Sbjct: 3 DYYETLGVERGASDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRRMY 62
Query: 110 D 110
D
Sbjct: 63 D 63
>sp|Q7M9T3|DNAJ_WOLSU Chaperone protein DnaJ OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaJ
PE=3 SV=1
Length = 374
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNS 105
+FD Y++L I+ S+ +IK AYR + + HPD S +M +NEAY VLSD
Sbjct: 3 EFDYYEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAEEMFKRVNEAYQVLSDEGK 62
Query: 106 RLAYD---KEQAKTAGLRGYTGKPIYSVW 131
R YD K+ ++ G G++G+ V+
Sbjct: 63 RQLYDRYGKQGLESQGYSGFSGRGFEDVF 91
>sp|Q1I490|CBPA_PSEE4 Curved DNA-binding protein OS=Pseudomonas entomophila (strain L48)
GN=cbpA PE=3 SV=1
Length = 321
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 47 MDF-DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPN 104
MDF D Y +LG+++S+D+ IK AYR L ++ HPD++ D NEAY VL D +
Sbjct: 1 MDFKDYYKILGVEASADEKAIKAAYRKLARKYHPDVSKERDAEDKFKEANEAYEVLGDKD 60
Query: 105 SRLAYDKEQAKTAGLRGYTGK 125
R YD+ +R Y G+
Sbjct: 61 KRAEYDE-------IRKYGGQ 74
>sp|B5YAR4|DNAJ_DICT6 Chaperone protein DnaJ OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1
Length = 390
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI-AGSAGHDMAIILNEAYSVLSDPNSRLA 108
D Y++LG+ ++ Q +IK AYR L ++ HPD+ + H+ +NEAY VLSDP R
Sbjct: 6 DYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHEKFKEINEAYEVLSDPQKRAQ 65
Query: 109 YDK 111
YD+
Sbjct: 66 YDQ 68
>sp|B1WVR2|DNAJ_CYAA5 Chaperone protein DnaJ OS=Cyanothece sp. (strain ATCC 51142)
GN=dnaJ PE=3 SV=1
Length = 376
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
M D YD+LG+D ++ + +K AYR L ++ HPD+ G + +N AY VLS+P++
Sbjct: 1 MPGDYYDILGVDRNASKEDLKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPDT 60
Query: 106 RLAYDKEQAKTAGLRGYTG 124
R YD Q AG+ G G
Sbjct: 61 RSRYD--QFGEAGVSGAGG 77
>sp|B3WEQ6|DNAJ_LACCB Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) GN=dnaJ
PE=3 SV=1
Length = 387
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y+ LG+ +D I+ A+R L K+ HPD+ + G + +NEAY VLSDP R A
Sbjct: 6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAA 65
Query: 109 YDK 111
YD+
Sbjct: 66 YDQ 68
>sp|Q038N5|DNAJ_LACC3 Chaperone protein DnaJ OS=Lactobacillus casei (strain ATCC 334)
GN=dnaJ PE=3 SV=1
Length = 387
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y+ LG+ +D I+ A+R L K+ HPD+ + G + +NEAY VLSDP R A
Sbjct: 6 DYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAA 65
Query: 109 YDK 111
YD+
Sbjct: 66 YDQ 68
>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=dnaJ PE=3 SV=1
Length = 386
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDI--AGSAGHDMAIILNEAYSVLSDPNSRL 107
D Y++LG+D + ++IK AYR L K+ HPD+ A +NEAY VLSDP R
Sbjct: 6 DYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRA 65
Query: 108 AYDK 111
YD+
Sbjct: 66 RYDQ 69
>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=MG002 PE=4 SV=1
Length = 310
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109
+LYDLL + +++ +IK AY+ L KR HPD+ G + +N AYS+LSDPN + Y
Sbjct: 2 NLYDLLELPTTASIKEIKIAYKRLAKRYHPDV-NKLGSQTFVEINNAYSILSDPNQKEKY 60
Query: 110 D 110
D
Sbjct: 61 D 61
>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1
Length = 376
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LGI S+ +IK AYR L K+ HPDI AG D ++EAY VLSD R
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|B2J3J3|DNAJ_NOSP7 Chaperone protein DnaJ OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=dnaJ PE=3 SV=1
Length = 375
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
M D Y++LG+ +D+ ++K AYR L ++ HPD+ G D +N AY VLS+P +
Sbjct: 1 MARDYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDR 66
>sp|Q5N0G1|DNAJ_SYNP6 Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1
Length = 376
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAG-HDMAIILNEAYSVLSDPNS 105
M D Y LLG+ +D+ +IK AYR L ++ HPD+ G D +N AY VLS+P +
Sbjct: 1 MAADYYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDQ 66
>sp|O27352|DNAJ_METTH Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=dnaJ PE=3 SV=1
Length = 376
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLA 108
D Y++LG+D +D+ +IK AYR L ++ HPD++ + ++EAY+VLSD R
Sbjct: 5 DYYEILGVDRGADKKEIKKAYRRLARKYHPDVSDDPDAAEKFKEISEAYAVLSDDEKRAR 64
Query: 109 YDKEQAKTAGLRGYTGKPIYS 129
YD+ AG+ G++ + I++
Sbjct: 65 YDR--FGHAGMDGFSQEDIFN 83
>sp|A8FFD1|DNAJ_BACP2 Chaperone protein DnaJ OS=Bacillus pumilus (strain SAFR-032)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG+ S+ + +IK AYR L K+ HPDI AG D + EAY LSD R
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQ 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
>sp|Q3MG81|DNAJ_ANAVT Chaperone protein DnaJ OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=dnaJ PE=3 SV=1
Length = 376
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
M D Y++LG+ +D+ +IK AYR L ++ HPD+ G + +N AY VLS+P +
Sbjct: 1 MARDYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDR 66
>sp|Q8YUA5|DNAJ_NOSS1 Chaperone protein DnaJ OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=dnaJ PE=3 SV=1
Length = 376
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNS 105
M D Y++LG+ +D+ +IK AYR L ++ HPD+ G + +N AY VLS+P +
Sbjct: 1 MARDYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPET 60
Query: 106 RLAYDK 111
R YD+
Sbjct: 61 RARYDR 66
>sp|B9DNJ9|DNAJ_STACT Chaperone protein DnaJ OS=Staphylococcus carnosus (strain TM300)
GN=dnaJ PE=3 SV=1
Length = 377
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAII-LNEAYSVLSDPNSRLA 108
D Y++LG+ + + +IK AYR L K+ HPDI G + ++EAY VLSD N R
Sbjct: 5 DYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKRAN 64
Query: 109 YDK 111
YD+
Sbjct: 65 YDQ 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,650,225
Number of Sequences: 539616
Number of extensions: 6349000
Number of successful extensions: 19511
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 17890
Number of HSP's gapped (non-prelim): 1027
length of query: 453
length of database: 191,569,459
effective HSP length: 121
effective length of query: 332
effective length of database: 126,275,923
effective search space: 41923606436
effective search space used: 41923606436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)