Query 012925
Match_columns 453
No_of_seqs 351 out of 2245
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2.2E-26 4.8E-31 235.3 5.8 127 47-173 2-171 (371)
2 KOG0716 Molecular chaperone (D 99.9 1.2E-23 2.7E-28 205.7 5.6 232 45-305 27-267 (279)
3 KOG0713 Molecular chaperone (D 99.9 1.6E-22 3.4E-27 203.3 6.7 89 45-133 12-108 (336)
4 KOG0712 Molecular chaperone (D 99.8 4.8E-21 1E-25 194.0 8.5 118 47-165 2-144 (337)
5 PRK14296 chaperone protein Dna 99.8 8.5E-21 1.9E-25 195.9 7.9 69 47-115 2-71 (372)
6 PTZ00037 DnaJ_C chaperone prot 99.8 6.2E-20 1.3E-24 192.2 7.3 87 46-134 25-113 (421)
7 PRK14287 chaperone protein Dna 99.8 9.7E-20 2.1E-24 188.0 7.4 87 48-134 3-98 (371)
8 PRK14298 chaperone protein Dna 99.8 1.4E-19 3E-24 187.2 7.3 87 48-134 4-102 (377)
9 PRK14282 chaperone protein Dna 99.8 2.1E-19 4.5E-24 185.3 8.4 69 47-115 2-73 (369)
10 PRK14276 chaperone protein Dna 99.8 2.7E-19 5.8E-24 185.2 7.3 68 48-115 3-71 (380)
11 PRK14280 chaperone protein Dna 99.8 3.5E-19 7.6E-24 184.1 7.4 69 48-116 3-72 (376)
12 PRK14288 chaperone protein Dna 99.8 3.5E-19 7.5E-24 183.8 6.7 69 48-116 2-72 (369)
13 PRK14278 chaperone protein Dna 99.8 6.7E-19 1.5E-23 182.2 7.6 86 49-134 3-98 (378)
14 PRK14297 chaperone protein Dna 99.8 6.3E-19 1.4E-23 182.4 7.1 70 47-116 2-73 (380)
15 PRK14286 chaperone protein Dna 99.8 4.8E-19 1E-23 182.9 5.8 70 47-116 2-73 (372)
16 PRK14284 chaperone protein Dna 99.8 1.4E-18 2.9E-23 180.6 8.1 67 49-115 1-69 (391)
17 PRK14277 chaperone protein Dna 99.7 1.2E-18 2.7E-23 180.6 6.8 68 48-115 4-73 (386)
18 TIGR02349 DnaJ_bact chaperone 99.7 2.8E-18 6.1E-23 175.7 7.7 67 50-116 1-68 (354)
19 PRK10767 chaperone protein Dna 99.7 3E-18 6.6E-23 176.6 7.6 69 47-115 2-72 (371)
20 PRK14294 chaperone protein Dna 99.7 3.5E-18 7.6E-23 176.0 6.0 70 47-116 2-73 (366)
21 PRK14285 chaperone protein Dna 99.7 3.4E-18 7.3E-23 176.2 5.9 68 48-115 2-71 (365)
22 PRK14279 chaperone protein Dna 99.7 5.3E-18 1.1E-22 176.3 6.8 68 47-114 7-76 (392)
23 PRK14301 chaperone protein Dna 99.7 9.4E-18 2E-22 173.4 5.2 69 48-116 3-73 (373)
24 PRK14299 chaperone protein Dna 99.7 1.9E-17 4.1E-22 165.8 5.5 69 47-115 2-71 (291)
25 PRK14283 chaperone protein Dna 99.7 2.3E-17 4.9E-22 170.7 6.2 68 48-115 4-72 (378)
26 KOG0715 Molecular chaperone (D 99.7 5.2E-17 1.1E-21 162.8 7.8 89 46-134 40-129 (288)
27 PRK14292 chaperone protein Dna 99.7 2.7E-17 5.9E-22 169.6 5.4 86 49-134 2-97 (371)
28 PRK14290 chaperone protein Dna 99.7 4.2E-17 9.2E-22 168.0 5.0 67 49-115 3-72 (365)
29 PRK14291 chaperone protein Dna 99.7 5.8E-17 1.3E-21 168.0 6.0 68 48-115 2-70 (382)
30 PRK14295 chaperone protein Dna 99.7 6.9E-17 1.5E-21 167.9 6.3 65 47-111 7-73 (389)
31 KOG0717 Molecular chaperone (D 99.7 8.7E-17 1.9E-21 166.8 6.2 67 51-117 10-79 (508)
32 PRK14293 chaperone protein Dna 99.6 1.4E-16 3.1E-21 164.6 5.8 69 48-116 2-71 (374)
33 PRK14281 chaperone protein Dna 99.6 1.4E-16 3E-21 166.0 5.6 69 48-116 2-72 (397)
34 KOG0691 Molecular chaperone (D 99.6 8.7E-17 1.9E-21 161.3 3.6 87 48-134 4-93 (296)
35 PRK14289 chaperone protein Dna 99.6 2.3E-16 4.9E-21 163.6 6.5 70 47-116 3-74 (386)
36 PTZ00341 Ring-infected erythro 99.6 1.4E-16 2.9E-21 177.3 5.0 74 46-119 570-644 (1136)
37 PF00226 DnaJ: DnaJ domain; I 99.6 1.6E-16 3.6E-21 123.8 4.0 61 50-110 1-64 (64)
38 PRK14300 chaperone protein Dna 99.6 3.8E-16 8.3E-21 161.4 5.8 67 49-115 3-70 (372)
39 KOG0718 Molecular chaperone (D 99.6 4E-16 8.6E-21 162.1 5.7 76 46-121 6-86 (546)
40 PRK10266 curved DNA-binding pr 99.6 5.2E-16 1.1E-20 156.4 6.3 67 48-114 3-70 (306)
41 PHA03102 Small T antigen; Revi 99.6 1.5E-15 3.2E-20 139.5 3.3 86 49-136 5-92 (153)
42 KOG0719 Molecular chaperone (D 99.5 3.3E-15 7.1E-20 144.1 4.1 69 48-116 13-85 (264)
43 smart00271 DnaJ DnaJ molecular 99.5 1.2E-14 2.6E-19 111.4 5.8 57 49-105 1-60 (60)
44 cd06257 DnaJ DnaJ domain or J- 99.5 1.8E-14 3.8E-19 108.5 5.6 53 50-102 1-55 (55)
45 COG2214 CbpA DnaJ-class molecu 99.5 2.9E-14 6.2E-19 131.1 5.5 67 47-113 4-73 (237)
46 KOG0721 Molecular chaperone (D 99.5 3.7E-14 8.1E-19 135.6 6.1 72 45-116 95-168 (230)
47 TIGR03835 termin_org_DnaJ term 99.5 2.4E-14 5.3E-19 156.6 5.0 68 49-116 2-70 (871)
48 KOG0624 dsRNA-activated protei 99.4 2.6E-13 5.7E-18 137.8 5.0 67 46-112 391-462 (504)
49 PRK05014 hscB co-chaperone Hsc 99.4 9.2E-13 2E-17 123.1 6.4 65 49-113 1-74 (171)
50 PRK01356 hscB co-chaperone Hsc 99.3 9.8E-13 2.1E-17 122.4 5.7 65 49-113 2-73 (166)
51 PRK03578 hscB co-chaperone Hsc 99.3 2.9E-12 6.3E-17 120.3 6.6 67 47-113 4-79 (176)
52 PRK00294 hscB co-chaperone Hsc 99.3 5.2E-12 1.1E-16 118.3 7.2 68 47-114 2-78 (173)
53 KOG0720 Molecular chaperone (D 99.3 3.5E-12 7.6E-17 132.9 5.2 71 47-117 233-304 (490)
54 KOG0714 Molecular chaperone (D 99.2 3.2E-12 7E-17 123.3 3.3 67 48-114 2-71 (306)
55 KOG0722 Molecular chaperone (D 99.2 8.8E-12 1.9E-16 121.9 3.1 73 36-114 26-99 (329)
56 PTZ00100 DnaJ chaperone protei 99.2 2.7E-11 5.9E-16 106.6 5.0 54 46-101 62-115 (116)
57 KOG0550 Molecular chaperone (D 99.2 1.6E-11 3.5E-16 127.0 3.7 69 46-114 370-441 (486)
58 PRK09430 djlA Dna-J like membr 99.0 1.2E-10 2.5E-15 116.0 4.3 57 46-102 197-262 (267)
59 PHA02624 large T antigen; Prov 99.0 2E-10 4.3E-15 124.8 5.0 60 48-109 10-71 (647)
60 PRK01773 hscB co-chaperone Hsc 98.9 1.2E-09 2.6E-14 102.5 5.8 65 49-113 2-75 (173)
61 COG5407 SEC63 Preprotein trans 98.9 5.6E-10 1.2E-14 116.4 3.3 71 46-116 95-172 (610)
62 TIGR00714 hscB Fe-S protein as 98.8 9.1E-09 2E-13 95.1 6.3 54 61-114 3-63 (157)
63 KOG1150 Predicted molecular ch 98.7 1.2E-08 2.7E-13 97.1 4.2 67 44-110 48-117 (250)
64 COG5269 ZUO1 Ribosome-associat 98.5 3.4E-08 7.3E-13 97.9 2.3 66 47-112 41-113 (379)
65 KOG1789 Endocytosis protein RM 98.1 3.2E-06 6.9E-11 95.6 5.0 55 46-101 1278-1336(2235)
66 KOG0568 Molecular chaperone (D 98.0 5.4E-06 1.2E-10 80.9 4.2 54 49-102 47-102 (342)
67 KOG0723 Molecular chaperone (D 97.6 8.7E-05 1.9E-09 64.6 5.3 53 49-103 56-108 (112)
68 KOG3192 Mitochondrial J-type c 96.7 0.001 2.3E-08 61.6 2.8 65 48-112 7-80 (168)
69 COG1141 Fer Ferredoxin [Energy 96.7 0.00033 7.2E-09 56.6 -0.7 55 141-196 3-67 (68)
70 PF13459 Fer4_15: 4Fe-4S singl 96.6 0.00036 7.7E-09 55.0 -0.7 54 141-195 1-65 (65)
71 PF13370 Fer4_13: 4Fe-4S singl 96.4 0.00037 8E-09 54.1 -1.9 52 143-194 1-57 (58)
72 COG1076 DjlA DnaJ-domain-conta 95.6 0.0062 1.4E-07 57.1 1.9 53 48-100 112-173 (174)
73 KOG0431 Auxilin-like protein a 94.2 0.051 1.1E-06 58.5 4.5 30 56-85 395-424 (453)
74 COG1076 DjlA DnaJ-domain-conta 93.8 0.026 5.7E-07 52.9 1.2 64 50-113 2-74 (174)
75 PF03656 Pam16: Pam16; InterP 89.8 0.55 1.2E-05 42.5 4.8 54 46-101 55-108 (127)
76 PF12797 Fer4_2: 4Fe-4S bindin 78.3 0.66 1.4E-05 29.8 -0.0 18 141-158 3-20 (22)
77 KOG0724 Zuotin and related mol 78.2 2.4 5.2E-05 43.4 4.0 53 61-113 4-62 (335)
78 PRK10882 hydrogenase 2 protein 72.3 4.1 8.8E-05 42.4 3.8 62 140-201 137-210 (328)
79 PF13446 RPT: A repeated domai 70.7 6.6 0.00014 30.5 3.9 26 50-75 6-31 (62)
80 COG1142 HycB Fe-S-cluster-cont 69.7 2.6 5.7E-05 39.8 1.6 58 139-197 75-140 (165)
81 PF11833 DUF3353: Protein of u 61.2 15 0.00033 35.5 5.1 38 58-101 1-38 (194)
82 PF12837 Fer4_6: 4Fe-4S bindin 60.1 2 4.3E-05 27.9 -0.8 20 141-160 2-21 (24)
83 PRK13029 2-oxoacid ferredoxin 55.2 7.8 0.00017 46.7 2.4 59 140-200 651-713 (1186)
84 TIGR01582 FDH-beta formate deh 55.0 7.7 0.00017 39.5 2.0 73 140-212 118-197 (283)
85 PF13247 Fer4_11: 4Fe-4S diclu 53.0 2.9 6.4E-05 36.0 -1.1 59 139-197 33-97 (98)
86 PRK09193 indolepyruvate ferred 51.7 10 0.00022 45.7 2.5 56 140-197 637-696 (1165)
87 PF14687 DUF4460: Domain of un 50.6 31 0.00066 30.6 4.8 44 60-103 5-54 (112)
88 PRK09626 oorD 2-oxoglutarate-a 41.1 22 0.00048 30.3 2.4 21 140-160 10-30 (103)
89 COG0437 HybA Fe-S-cluster-cont 40.9 24 0.00051 34.5 2.8 61 139-201 93-161 (203)
90 PRK13030 2-oxoacid ferredoxin 40.0 19 0.00041 43.5 2.4 56 140-197 623-682 (1159)
91 PF11381 DUF3185: Protein of u 34.7 36 0.00078 27.0 2.5 54 382-448 4-57 (59)
92 TIGR03149 cyt_nit_nrfC cytochr 34.4 55 0.0012 32.0 4.3 77 141-217 120-204 (225)
93 PF00037 Fer4: 4Fe-4S binding 33.4 10 0.00023 24.2 -0.6 18 143-160 3-20 (24)
94 PF13140 DUF3980: Domain of un 32.0 1E+02 0.0023 25.7 4.8 56 382-438 19-76 (87)
95 COG1146 Ferredoxin [Energy pro 32.0 44 0.00095 26.2 2.6 25 142-166 4-29 (68)
96 PF09320 DUF1977: Domain of un 30.8 19 0.00042 31.1 0.4 39 204-243 2-44 (107)
97 PRK09129 NADH dehydrogenase su 28.6 70 0.0015 36.7 4.6 58 141-198 139-204 (776)
98 PRK15449 ferredoxin-like prote 28.1 28 0.00061 30.1 1.0 21 140-160 55-75 (95)
99 KOG3256 NADH:ubiquinone oxidor 26.8 37 0.0008 32.5 1.5 70 128-197 93-169 (212)
100 PF14697 Fer4_21: 4Fe-4S diclu 26.5 22 0.00047 27.6 0.0 18 143-160 3-20 (59)
101 PF06902 Fer4_19: Divergent 4F 26.4 17 0.00038 28.9 -0.6 53 140-196 7-62 (64)
102 PF13237 Fer4_10: 4Fe-4S diclu 26.2 27 0.00059 25.6 0.5 20 141-160 2-21 (52)
103 PF12800 Fer4_4: 4Fe-4S bindin 25.9 39 0.00085 20.1 1.0 14 147-160 3-16 (17)
104 PRK14993 tetrathionate reducta 25.7 48 0.001 32.9 2.3 69 140-208 124-199 (244)
105 TIGR01973 NuoG NADH-quinone ox 22.8 42 0.00092 37.3 1.4 59 141-199 137-203 (603)
106 PRK09625 porD pyruvate flavodo 22.7 54 0.0012 29.5 1.8 21 141-161 54-74 (133)
107 COG5552 Uncharacterized conser 22.6 2.4E+02 0.0052 23.7 5.3 34 49-82 3-40 (88)
108 COG3671 Predicted membrane pro 22.4 1.1E+02 0.0024 27.7 3.6 47 386-443 39-85 (125)
109 TIGR02060 aprB adenosine phosp 22.3 48 0.001 30.0 1.4 62 141-204 3-73 (132)
110 PF10041 DUF2277: Uncharacteri 21.8 2.8E+02 0.0061 23.3 5.6 54 49-102 3-61 (78)
111 CHL00065 psaC photosystem I su 20.3 57 0.0012 26.3 1.3 18 143-160 6-23 (81)
112 PRK12769 putative oxidoreducta 20.2 98 0.0021 34.8 3.6 20 141-160 80-99 (654)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.2e-26 Score=235.34 Aligned_cols=127 Identities=32% Similarity=0.519 Sum_probs=95.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC----
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR---- 120 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~---- 120 (453)
...|||+||||+++||.+||||||||||++||||+|+ +.++++|++|++||+|||||++|++||++|.......
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 5689999999999999999999999999999999998 3489999999999999999999999999987664311
Q ss_pred ----CCC--CCCCcccccCCcch----h-h-----------------hhc-----ccceecccCcccccccCcee----e
Q 012925 121 ----GYT--GKPIYSVWFGSESE----Q-R-----------------AVF-----VDEVKCVGCLKCALFAGKTF----A 163 (453)
Q Consensus 121 ----g~~--g~~~fs~ffG~~~~----~-~-----------------~vF-----vDE~~CIGC~kCsl~a~~tF----a 163 (453)
+|. -.++|+.|||++.. . + +++ +.....+-|..|++...+.. .
T Consensus 82 ~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~t 161 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKT 161 (371)
T ss_pred CCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCc
Confidence 122 26688899954321 1 0 111 11135677888887754433 4
Q ss_pred eecccCccee
Q 012925 164 IESAYGRARV 173 (453)
Q Consensus 164 ie~~~GRARV 173 (453)
+.+|.|.+.+
T Consensus 162 C~tC~G~G~v 171 (371)
T COG0484 162 CPTCNGSGQV 171 (371)
T ss_pred CCCCCCcCeE
Confidence 5566676644
No 2
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-23 Score=205.67 Aligned_cols=232 Identities=27% Similarity=0.283 Sum_probs=159.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc---CC
Q 012925 45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA---GL 119 (453)
Q Consensus 45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~---~~ 119 (453)
+....|+|+|||++++|+.++|||+||+|+++||||++++. ++++|++||+||++|+||.+|..||.+|..+. +.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~ 106 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ 106 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence 45578999999999999999999999999999999999864 89999999999999999999999999977654 33
Q ss_pred CCCCCCCCcccccCCcchhhhhcccceeccc-Cccc---ccccCceeeeecccCcceeecccCCCCCCCccccccceEEE
Q 012925 120 RGYTGKPIYSVWFGSESEQRAVFVDEVKCVG-CLKC---ALFAGKTFAIESAYGRARVVAQWADPEHNPGSYRNVPSRLI 195 (453)
Q Consensus 120 ~g~~g~~~fs~ffG~~~~~~~vFvDE~~CIG-C~kC---sl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~IqsCPvIs~ 195 (453)
.|.++...+.+|.++.......++|...|.+ |..| ..++ .+. |...|+.+++...+.++.|
T Consensus 107 fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~~c~~cc~~~--~~~--------~~c~~~~~P~~~~~~~~~~----- 171 (279)
T KOG0716|consen 107 FGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCLCCRACCCCC--CCN--------RFCCGKAKPEVSEQHDYYC----- 171 (279)
T ss_pred hcccCcceEEEecchhhhHHhhhhhhhhcchhhhhHHhHhhhh--cch--------HHHhhccCCccccchhhHH-----
Confidence 4556666777777766666677777754322 2222 1111 111 3445666665522225555
Q ss_pred eccccHHHHHHHHhhCCCcceeeccccccCcccccceechhhHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhccc
Q 012925 196 VERSDLAALEYLMAKQPRGTVRVGAGNTAGARVSNIFVDVKKFQTQYEDAMKKAAGKDTDTNWEARLSAIQAIRSISNWL 275 (453)
Q Consensus 196 Ver~~laaLeflm~~~P~~~l~~~ag~~~g~~~~nvfv~~~~F~~~~~~~~~~~~~~es~~q~eaR~~a~~~~~~~~~~~ 275 (453)
.+..+..++|++..+++..+....+......++|.+++...|. ...-.+++..+.+-..++.+.+|.
T Consensus 172 -~~s~i~~~~~l~~~~~~~~~~~~~ed~~i~~vs~~~~~v~~~~------------~~~~S~r~~~v~~~v~~~p~~~~~ 238 (279)
T KOG0716|consen 172 -HRSRIALLNFLQSNNKRVCLSHLLEDVFIDLVSNGAYDVGFSE------------RVLYSKREVIVGQPVFDMPISLWI 238 (279)
T ss_pred -hhchhhhhhhhhhccccccccccchhhhhhhhhhhhccccccc------------ccccCccchhhCceeeccCccccc
Confidence 5666788999999999877665555556666777777754441 112235666666666677788998
Q ss_pred ccccCccccccccchhhccccchhHHHHHH
Q 012925 276 YWQLPNAESYQNLTRSKQKLKEPNIKKLLD 305 (453)
Q Consensus 276 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (453)
+=+.|.+.+.-+++..++ ...++++.+++
T Consensus 239 ~~~~~~~~~~~~~~er~~-~i~~~~~~~~~ 267 (279)
T KOG0716|consen 239 KPHSFRTWSSGNATERTQ-LIAPLIRSYYY 267 (279)
T ss_pred cccCcccccccccccchh-hcCCcccchhh
Confidence 444455544445554443 34455666555
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-22 Score=203.26 Aligned_cols=89 Identities=35% Similarity=0.567 Sum_probs=76.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC--
Q 012925 45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR-- 120 (453)
Q Consensus 45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~-- 120 (453)
.....|||+||||+++|+..|||+||||||++||||||+++ ++++|++|+.||+|||||++|+.||++|.+.....
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~ 91 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK 91 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence 35578999999999999999999999999999999999844 79999999999999999999999999998876532
Q ss_pred ---CCCC-CCCcccccC
Q 012925 121 ---GYTG-KPIYSVWFG 133 (453)
Q Consensus 121 ---g~~g-~~~fs~ffG 133 (453)
+..+ .++|+.||+
T Consensus 92 ~~~~g~~~~~~f~~~f~ 108 (336)
T KOG0713|consen 92 DGEGGGGGNDIFSAFFG 108 (336)
T ss_pred ccccCCcccchHHHhhc
Confidence 2222 467777776
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.8e-21 Score=194.04 Aligned_cols=118 Identities=32% Similarity=0.475 Sum_probs=89.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCC-CC
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYT-GK 125 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~-g~ 125 (453)
....||+||||+++||.+|||||||+|+++||||||+. +.++|++|.+||+|||||++|+.||++|.+....+++. +.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 35689999999999999999999999999999999954 78999999999999999999999999998876443332 22
Q ss_pred CCcccccCCcc--h---hh--------hhcccc-----------eecccCcccccccCceeeee
Q 012925 126 PIYSVWFGSES--E---QR--------AVFVDE-----------VKCVGCLKCALFAGKTFAIE 165 (453)
Q Consensus 126 ~~fs~ffG~~~--~---~~--------~vFvDE-----------~~CIGC~kCsl~a~~tFaie 165 (453)
..|+.|||.+. . .+ .++.++ ..-.-|..|.+..+..+...
T Consensus 81 ~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~ 144 (337)
T KOG0712|consen 81 GGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP 144 (337)
T ss_pred ccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC
Confidence 23888886431 1 11 011111 24566888888877766553
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=8.5e-21 Score=195.87 Aligned_cols=69 Identities=35% Similarity=0.600 Sum_probs=64.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
...|||+||||+++|+.+|||+|||+||++||||+++ +.++++|++|++||+|||||++|+.||++|..
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 3579999999999999999999999999999999986 34789999999999999999999999998764
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.79 E-value=6.2e-20 Score=192.24 Aligned_cols=87 Identities=30% Similarity=0.482 Sum_probs=73.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC--CCCC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL--RGYT 123 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~--~g~~ 123 (453)
+...|||+||||+++||.+|||+|||+||++||||+++ ..++|++|++||+||+||.+|+.||+++...... .+.+
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d 102 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPAD 102 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcc
Confidence 34679999999999999999999999999999999985 3589999999999999999999999988654321 1222
Q ss_pred CCCCcccccCC
Q 012925 124 GKPIYSVWFGS 134 (453)
Q Consensus 124 g~~~fs~ffG~ 134 (453)
..++|+.|||+
T Consensus 103 ~~d~f~~~Fgg 113 (421)
T PTZ00037 103 ASDLFDLIFGG 113 (421)
T ss_pred hhhhHHHhhcc
Confidence 34678888874
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.7e-20 Score=187.96 Aligned_cols=87 Identities=31% Similarity=0.628 Sum_probs=72.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC-------
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL------- 119 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~------- 119 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||+||+||.+|+.||++|......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 469999999999999999999999999999999986 346789999999999999999999999998653221
Q ss_pred CCCCC-CCCcccccCC
Q 012925 120 RGYTG-KPIYSVWFGS 134 (453)
Q Consensus 120 ~g~~g-~~~fs~ffG~ 134 (453)
.+|.+ .++|+.|||+
T Consensus 83 ~~f~~~~d~f~~~fgg 98 (371)
T PRK14287 83 GDFGGFSDIFDMFFGG 98 (371)
T ss_pred ccccchHHHHHhhhcc
Confidence 11111 2568888874
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.4e-19 Score=187.17 Aligned_cols=87 Identities=30% Similarity=0.516 Sum_probs=72.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC------
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR------ 120 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~------ 120 (453)
..|||+||||+++|+.+|||+|||+||++||||+++. .+.++|++|++||+||+||.+|+.||++|.......
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 4699999999999999999999999999999999863 367899999999999999999999999886432110
Q ss_pred ----CCC-CCCCcccccCC
Q 012925 121 ----GYT-GKPIYSVWFGS 134 (453)
Q Consensus 121 ----g~~-g~~~fs~ffG~ 134 (453)
++. -.++|+.|||+
T Consensus 84 ~~~~~~~~~~d~f~~~Fgg 102 (377)
T PRK14298 84 FRGADFGGFGDIFEMFFGG 102 (377)
T ss_pred cccCCcCcchhhhHhhhcC
Confidence 111 12578888874
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.1e-19 Score=185.30 Aligned_cols=69 Identities=36% Similarity=0.548 Sum_probs=63.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
...|||+||||+++||.+|||+|||+|+++||||+++.. +.++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 457999999999999999999999999999999998642 578999999999999999999999998764
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=2.7e-19 Score=185.18 Aligned_cols=68 Identities=41% Similarity=0.664 Sum_probs=63.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
..|||+||||+++||.+|||+|||+|+++||||+++. .++++|++|++||+||+||.+|+.||++|..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 5799999999999999999999999999999999863 4689999999999999999999999998864
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.5e-19 Score=184.10 Aligned_cols=69 Identities=38% Similarity=0.606 Sum_probs=64.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||+||+||.+|+.||++|...
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 469999999999999999999999999999999986 347899999999999999999999999988653
No 12
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.5e-19 Score=183.75 Aligned_cols=69 Identities=35% Similarity=0.610 Sum_probs=64.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|||+||||+++||.+|||+|||+||++||||+++. .+.++|++|++||+||+||.+|+.||++|...
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 4799999999999999999999999999999999973 36899999999999999999999999998653
No 13
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.7e-19 Score=182.16 Aligned_cols=86 Identities=31% Similarity=0.567 Sum_probs=70.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcC----CCCCC
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAG----LRGYT 123 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~----~~g~~ 123 (453)
.|||+||||+++|+.+|||+|||+|+++||||+++.. ++++|++|++||+||+||.+|+.||++|..... ..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 6999999999999999999999999999999999733 678999999999999999999999998754211 01111
Q ss_pred ----C-CCCcccccCC
Q 012925 124 ----G-KPIYSVWFGS 134 (453)
Q Consensus 124 ----g-~~~fs~ffG~ 134 (453)
+ .++|+.|||+
T Consensus 83 ~~f~~~~d~f~~ffgg 98 (378)
T PRK14278 83 GGFGGLGDVFEAFFGG 98 (378)
T ss_pred cCcCchhHHHHHHhCC
Confidence 1 2568888874
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.3e-19 Score=182.35 Aligned_cols=70 Identities=33% Similarity=0.577 Sum_probs=64.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
...|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||+||+||.+|+.||++|...
T Consensus 2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 34799999999999999999999999999999999963 36899999999999999999999999987653
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=4.8e-19 Score=182.90 Aligned_cols=70 Identities=34% Similarity=0.565 Sum_probs=64.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG--SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~--~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
...|||+||||+++|+.+|||+|||+||++||||+++ +.+.++|++|++||+||+||.+|+.||+++...
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 3579999999999999999999999999999999986 336899999999999999999999999988653
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.4e-18 Score=180.58 Aligned_cols=67 Identities=34% Similarity=0.573 Sum_probs=62.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
.|||+||||+++||.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999973 3688999999999999999999999998764
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=180.59 Aligned_cols=68 Identities=38% Similarity=0.666 Sum_probs=63.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||+||+||.+|+.||++|..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999863 3678999999999999999999999998764
No 18
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=2.8e-18 Score=175.71 Aligned_cols=67 Identities=39% Similarity=0.656 Sum_probs=62.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||.++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999963 46889999999999999999999999987653
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3e-18 Score=176.65 Aligned_cols=69 Identities=36% Similarity=0.600 Sum_probs=63.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
...|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||+++..
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 35799999999999999999999999999999999863 3678999999999999999999999998764
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=3.5e-18 Score=176.05 Aligned_cols=70 Identities=33% Similarity=0.564 Sum_probs=64.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
...|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|+.||++|...
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999963 36789999999999999999999999998653
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=3.4e-18 Score=176.21 Aligned_cols=68 Identities=32% Similarity=0.541 Sum_probs=63.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
..|||+||||+++||.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|..||+++..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 3699999999999999999999999999999999863 3678999999999999999999999998764
No 22
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=5.3e-18 Score=176.30 Aligned_cols=68 Identities=37% Similarity=0.591 Sum_probs=63.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
...|||+||||+++|+.+|||+|||+||++||||+++. .+.++|++|++||+|||||++|+.||+++.
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 35799999999999999999999999999999999873 368999999999999999999999999874
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=9.4e-18 Score=173.40 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=63.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++.. +.++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 57999999999999999999999999999999998633 5789999999999999999999999988653
No 24
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=1.9e-17 Score=165.81 Aligned_cols=69 Identities=35% Similarity=0.607 Sum_probs=64.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
...|||+||||+++||.+|||+|||+|+++||||+++ +.++++|++|++||++|+||.+|+.||+++..
T Consensus 2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 3579999999999999999999999999999999986 34689999999999999999999999998764
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=2.3e-17 Score=170.73 Aligned_cols=68 Identities=37% Similarity=0.653 Sum_probs=63.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++ +.++++|++|++||++|+||.+|+.||++|..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 579999999999999999999999999999999986 44789999999999999999999999998764
No 26
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.2e-17 Score=162.78 Aligned_cols=89 Identities=30% Similarity=0.481 Sum_probs=73.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCCC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTG 124 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~g 124 (453)
....|||+||||+++|+..|||+||++|+++||||.+... +.++|++|.+||++|+|+++|+.||.++.......+..+
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~ 119 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP 119 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence 3444999999999999999999999999999999999744 789999999999999999999999999876411111134
Q ss_pred CCCcccccCC
Q 012925 125 KPIYSVWFGS 134 (453)
Q Consensus 125 ~~~fs~ffG~ 134 (453)
.+.|..+|++
T Consensus 120 ~~~~~~~~~~ 129 (288)
T KOG0715|consen 120 FDVFLEFFGG 129 (288)
T ss_pred cchHHHhhcc
Confidence 5555666655
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=2.7e-17 Score=169.61 Aligned_cols=86 Identities=34% Similarity=0.591 Sum_probs=71.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC-------C
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL-------R 120 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~-------~ 120 (453)
.|||+||||+++|+.++||+|||+|++++|||+++. .+.++|++|++||+||+||.+|+.||.+|...... .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 599999999999999999999999999999999964 36899999999999999999999999987643110 1
Q ss_pred C--CCCCCCcccccCC
Q 012925 121 G--YTGKPIYSVWFGS 134 (453)
Q Consensus 121 g--~~g~~~fs~ffG~ 134 (453)
+ ++..++|+.|||+
T Consensus 82 ~~~~d~~d~f~~~fg~ 97 (371)
T PRK14292 82 GMGFDPMDIFEQLFGG 97 (371)
T ss_pred ccCCChHHHHHHhhCC
Confidence 1 2234678888874
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=4.2e-17 Score=168.00 Aligned_cols=67 Identities=39% Similarity=0.656 Sum_probs=62.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
.|||+||||+++|+.+|||+|||+|++++|||+++. .+.++|++|++||++|+||.+|+.||.+|..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 699999999999999999999999999999999863 3679999999999999999999999998764
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=5.8e-17 Score=167.97 Aligned_cols=68 Identities=38% Similarity=0.646 Sum_probs=63.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|+.||+++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 4799999999999999999999999999999999973 4689999999999999999999999998764
No 30
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=6.9e-17 Score=167.86 Aligned_cols=65 Identities=35% Similarity=0.631 Sum_probs=61.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhH
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDK 111 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~ 111 (453)
...|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||+||+||.+|+.||+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 35799999999999999999999999999999999863 368999999999999999999999998
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.7e-17 Score=166.80 Aligned_cols=67 Identities=33% Similarity=0.609 Sum_probs=63.3
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925 51 LYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA 117 (453)
Q Consensus 51 yYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~ 117 (453)
||+||||.++|+..+||++||+|||+||||++++. +++.|+.|+.||+|||||+.|..||.++.+.+
T Consensus 10 ~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 10 YYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999765 68999999999999999999999999987654
No 32
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.4e-16 Score=164.57 Aligned_cols=69 Identities=36% Similarity=0.661 Sum_probs=63.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||.++...
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 3699999999999999999999999999999999863 36899999999999999999999999987643
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.4e-16 Score=165.96 Aligned_cols=69 Identities=36% Similarity=0.563 Sum_probs=63.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||+++...
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 3699999999999999999999999999999999863 36789999999999999999999999987653
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.7e-17 Score=161.26 Aligned_cols=87 Identities=39% Similarity=0.539 Sum_probs=73.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCC-CC
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA--GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGY-TG 124 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~--a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~-~g 124 (453)
..|||+||||+.+++..+||+|||+.+++||||||+.+ +.+.|+.|.+||+||+|+.+|..||..+.......++ ..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~ 83 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ 83 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence 67999999999999999999999999999999999843 7999999999999999999999999998876544433 23
Q ss_pred CCCcccccCC
Q 012925 125 KPIYSVWFGS 134 (453)
Q Consensus 125 ~~~fs~ffG~ 134 (453)
.++|..-||+
T Consensus 84 ~~~~r~~f~~ 93 (296)
T KOG0691|consen 84 ADGFRKKFGS 93 (296)
T ss_pred HHHHHHHhhh
Confidence 3344444554
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.3e-16 Score=163.64 Aligned_cols=70 Identities=33% Similarity=0.491 Sum_probs=64.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
...|||+||||+++|+.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||+++...
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 35799999999999999999999999999999999963 36899999999999999999999999987643
No 36
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.63 E-value=1.4e-16 Score=177.27 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=67.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGL 119 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~ 119 (453)
.++.+||+||||+++||..+||+|||+||++||||+++.. +.++|+.|++||+|||||.+|+.||.+|..+...
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 4678999999999999999999999999999999999743 6789999999999999999999999998765443
No 37
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.63 E-value=1.6e-16 Score=123.77 Aligned_cols=61 Identities=39% Similarity=0.713 Sum_probs=57.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhh
Q 012925 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYD 110 (453)
Q Consensus 50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD 110 (453)
|||+||||+++++.++||++|+++++++|||+++.. +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999999999997543 4789999999999999999999998
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=3.8e-16 Score=161.37 Aligned_cols=67 Identities=34% Similarity=0.569 Sum_probs=62.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhh
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAK 115 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~ 115 (453)
.|||+||||+++||.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 699999999999999999999999999999999863 3678999999999999999999999998764
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4e-16 Score=162.09 Aligned_cols=76 Identities=32% Similarity=0.506 Sum_probs=68.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLR 120 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~ 120 (453)
..+.|||.+|+|+++||.+|||+|||++++.|||||..++ ++++|+.|.+||+|||||++|.+||.+|.++....
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~ 85 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE 85 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence 3456999999999999999999999999999999998633 58999999999999999999999999999877644
Q ss_pred C
Q 012925 121 G 121 (453)
Q Consensus 121 g 121 (453)
|
T Consensus 86 g 86 (546)
T KOG0718|consen 86 G 86 (546)
T ss_pred C
Confidence 3
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.61 E-value=5.2e-16 Score=156.43 Aligned_cols=67 Identities=34% Similarity=0.543 Sum_probs=62.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
..|||+||||+++++.+|||+|||+|+++||||+++. .+.++|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4699999999999999999999999999999999863 478999999999999999999999999864
No 41
>PHA03102 Small T antigen; Reviewed
Probab=99.56 E-value=1.5e-15 Score=139.52 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=71.5
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhcCCCCCCCCC
Q 012925 49 FDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTAGLRGYTGKP 126 (453)
Q Consensus 49 ~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~~~~g~~g~~ 126 (453)
..+|+||||+++| |.++||+|||++++++|||+++ ..++|++||+||++|+|+.+|..||.++..........+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~ 82 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDVPSG 82 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--hhHHHHHHHHHHHHHhhHHHhccccccCCcccccccccHHH
Confidence 4589999999999 9999999999999999999974 35799999999999999999999999886554333333555
Q ss_pred CcccccCCcc
Q 012925 127 IYSVWFGSES 136 (453)
Q Consensus 127 ~fs~ffG~~~ 136 (453)
.|.+.||++.
T Consensus 83 ~f~~~fg~~~ 92 (153)
T PHA03102 83 YVGATFGDRV 92 (153)
T ss_pred HhhhhcCCcc
Confidence 6677777654
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.3e-15 Score=144.13 Aligned_cols=69 Identities=32% Similarity=0.561 Sum_probs=63.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
..|+|+||||.++|+..+||+|||+|++++|||++++. ++++|+.|+.||+||+|.++|+.||..|.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34899999999999999999999999999999999533 5899999999999999999999999987644
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.2e-14 Score=111.39 Aligned_cols=57 Identities=39% Similarity=0.640 Sum_probs=52.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHhhcCCCCc
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---AGHDMAIILNEAYSVLSDPNS 105 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~a~~~f~~I~eAYevLsDp~k 105 (453)
.|||+||||+++++.++||++|+++++++|||+++. .+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999873 268899999999999999864
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.51 E-value=1.8e-14 Score=108.46 Aligned_cols=53 Identities=42% Similarity=0.678 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHhhcCC
Q 012925 50 DLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS--AGHDMAIILNEAYSVLSD 102 (453)
Q Consensus 50 DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~--~a~~~f~~I~eAYevLsD 102 (453)
|||+||||+++++.++||++||++++++|||+++. .+.+.|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999974 468999999999999987
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.9e-14 Score=131.05 Aligned_cols=67 Identities=37% Similarity=0.605 Sum_probs=62.0
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
...|||+||||+++|+..|||+|||+++++||||+++.. +.+.|+.|++||++|+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 357899999999999999999999999999999999744 5699999999999999999999999864
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.7e-14 Score=135.63 Aligned_cols=72 Identities=31% Similarity=0.538 Sum_probs=65.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-c-hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 45 LNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-A-GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 45 s~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
.....|+||||||++++++.|||||||+|.+++||||+++ . .++.|..|++||+.|+|+..|+.|..+|..+
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 3667899999999999999999999999999999999876 3 4677889999999999999999999987643
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=2.4e-14 Score=156.57 Aligned_cols=68 Identities=40% Similarity=0.628 Sum_probs=62.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS-AGHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~-~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
.|||+||||+++|+.++||+|||+|+++||||+++. .+.++|++|++||++|+||.+|..||.++..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 589999999999999999999999999999999864 35778999999999999999999999987644
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=2.6e-13 Score=137.80 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=61.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-----GHDMAIILNEAYSVLSDPNSRLAYDKE 112 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-----a~~~f~~I~eAYevLsDp~kR~~YD~~ 112 (453)
....|||+||||.++|+..||-|||||+|.++|||...+. ++.+|.-|..|-+||+||++|+.||..
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 4568999999999999999999999999999999988644 578999999999999999999999975
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=9.2e-13 Score=123.06 Aligned_cols=65 Identities=29% Similarity=0.508 Sum_probs=57.3
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
.|||++|||+++ ++..+||++||++++++|||+.... +.+.|..||+||++|+||.+|..|+...
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999996 6889999999999999999997532 2467899999999999999999999654
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=9.8e-13 Score=122.41 Aligned_cols=65 Identities=31% Similarity=0.394 Sum_probs=57.1
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSAG-----HDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~a-----~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
.|||++|||+++ ++..+|+++||++++++|||++.... .+.+..||+||++|+||.+|..|+...
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 489999999997 78999999999999999999985332 235779999999999999999998764
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=2.9e-12 Score=120.31 Aligned_cols=67 Identities=33% Similarity=0.504 Sum_probs=57.8
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--h-----HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 47 MDFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA--G-----HDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 47 ~~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~--a-----~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
...|||+||||++. ++..+|+++||++++++|||++... . .+.+..||+||++|+||.+|..|+...
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 45799999999996 6889999999999999999998532 1 344689999999999999999999754
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=5.2e-12 Score=118.34 Aligned_cols=68 Identities=31% Similarity=0.407 Sum_probs=59.8
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 47 MDFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 47 ~~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
...|||++|||++. .+..+|+++||++++++|||++... +.+.|..||+||++|+||.+|..|+....
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 56799999999998 6789999999999999999997532 24678999999999999999999998653
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.5e-12 Score=132.93 Aligned_cols=71 Identities=28% Similarity=0.389 Sum_probs=65.5
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHhhcCCCCchhhhhHHHhhhc
Q 012925 47 MDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAG-SAGHDMAIILNEAYSVLSDPNSRLAYDKEQAKTA 117 (453)
Q Consensus 47 ~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~-~~a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~~ 117 (453)
...|.|.+|||++++++++|||.|||+|...|||||. +.+.+.|+.|..||++|+|+++|+.||......+
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ken 304 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKEN 304 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 3789999999999999999999999999999999997 4479999999999999999999999999876543
No 54
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.2e-12 Score=123.28 Aligned_cols=67 Identities=40% Similarity=0.589 Sum_probs=62.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
..|||+||||.++|+.+|||+|||++++++|||+++.. +..+|++|++||++|+|+.+|..||+++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 47999999999999999999999999999999998755 45579999999999999999999999987
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.8e-12 Score=121.93 Aligned_cols=73 Identities=30% Similarity=0.575 Sum_probs=65.8
Q ss_pred CcccccccCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 36 NSVTCCKASLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 36 ~~~~C~~~ss~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
.-+.| ...|.|+||||.++++..||++|||+|+++||||++++. +.+.|..|..||++|.|...|..||-...
T Consensus 26 egLYC------G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 26 EGLYC------GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred hhhcc------cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 34677 667999999999999999999999999999999999744 67899999999999999999999998654
No 56
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.17 E-value=2.7e-11 Score=106.63 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=49.1
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS 101 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs 101 (453)
+...++|+||||++++|.+|||++||+|++++|||+. .+++.|++|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg--Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG--GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHh
Confidence 4557999999999999999999999999999999985 35678999999999995
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.6e-11 Score=127.02 Aligned_cols=69 Identities=35% Similarity=0.557 Sum_probs=62.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
.+.+|||.||||.++++.++||+|||++++.+|||++... ++.+|++|.+||.+|+||.+|..||....
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 3478999999999999999999999999999999998633 67899999999999999999999998543
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.05 E-value=1.2e-10 Score=116.03 Aligned_cols=57 Identities=32% Similarity=0.486 Sum_probs=50.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHhhcCC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---------AGHDMAIILNEAYSVLSD 102 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---------~a~~~f~~I~eAYevLsD 102 (453)
+.-.|+|+||||++++|.+|||++||+|+++||||+... .++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999631 147899999999999975
No 59
>PHA02624 large T antigen; Provisional
Probab=99.02 E-value=2e-10 Score=124.82 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=55.9
Q ss_pred ccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCCCchhhh
Q 012925 48 DFDLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDPNSRLAY 109 (453)
Q Consensus 48 ~~DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp~kR~~Y 109 (453)
..++|++|||+++| +.++||+|||++++++|||+++ ++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG--deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG--DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35899999999999 9999999999999999999964 468999999999999999999998
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=1.2e-09 Score=102.49 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=56.8
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 49 FDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 49 ~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
.|||++||+++. .+..++++.||+|++++|||+.... +.+....||+||.+|+||.+|..|=...
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L 75 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL 75 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence 589999999998 8999999999999999999997533 2345679999999999999999997654
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.91 E-value=5.6e-10 Score=116.41 Aligned_cols=71 Identities=32% Similarity=0.535 Sum_probs=64.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHhhcCCCCchhhhhHHHhhh
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGS---A----GHDMAIILNEAYSVLSDPNSRLAYDKEQAKT 116 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~---~----a~~~f~~I~eAYevLsDp~kR~~YD~~g~~~ 116 (453)
....|+|||||++.+++..|||++||+|..++||||.++ . -++.+++|++||+.|+|...|+.|-.+|..+
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 456799999999999999999999999999999999875 2 2788999999999999999999999987643
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.78 E-value=9.1e-09 Score=95.07 Aligned_cols=54 Identities=31% Similarity=0.443 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHHHh
Q 012925 61 SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKEQA 114 (453)
Q Consensus 61 As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~g~ 114 (453)
.+..+|+++||++++++|||+.... +.+.+..||+||++|+||.+|..|+....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4678999999999999999986432 35788999999999999999999998754
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.2e-08 Score=97.07 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=60.0
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHhhcCCCCchhhhh
Q 012925 44 SLNMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---GHDMAIILNEAYSVLSDPNSRLAYD 110 (453)
Q Consensus 44 ss~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---a~~~f~~I~eAYevLsDp~kR~~YD 110 (453)
|++-+.|+|+||.|+|+.+.++||+.||+|++..|||||+++ +..+|-.|.+||..|-|+..|..-+
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 356788999999999999999999999999999999999866 5788999999999999998766543
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.4e-08 Score=97.86 Aligned_cols=66 Identities=30% Similarity=0.453 Sum_probs=58.2
Q ss_pred CccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925 47 MDFDLYDLLGIDSS---SDQSQIKTAYRMLQKRCHPDIAGSA----GHDMAIILNEAYSVLSDPNSRLAYDKE 112 (453)
Q Consensus 47 ~~~DyYevLGV~~~---As~~eIKkAYRklalk~HPDk~~~~----a~~~f~~I~eAYevLsDp~kR~~YD~~ 112 (453)
...|+|.+||++.- ++..+|.++.++...+||||+...+ ..+.|+.|+.||+||+|+.+|..||..
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 34799999999964 8899999999999999999997322 378999999999999999999999963
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.2e-06 Score=95.64 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=47.7
Q ss_pred CCccccccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925 46 NMDFDLYDLLGIDSS----SDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS 101 (453)
Q Consensus 46 ~~~~DyYevLGV~~~----As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs 101 (453)
+...+-|+||.|+-+ -..+.||++|+|||.+|||||| |.+.++|..+|+||+.|+
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN-PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN-PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHHH
Confidence 445678999999865 2347899999999999999999 567899999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.4e-06 Score=80.92 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=49.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHh-hcCC
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMAIILNEAYS-VLSD 102 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f~~I~eAYe-vLsD 102 (453)
+.||.||||..+|+.++++.+|.+|++++|||...+. ..+.|++|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998755 4789999999998 7763
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=8.7e-05 Score=64.62 Aligned_cols=53 Identities=34% Similarity=0.417 Sum_probs=44.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcCCC
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLSDP 103 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLsDp 103 (453)
..--.||||.++++.+.||+|+||..+..|||+.+.+ -...+||||+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence 3444599999999999999999999999999998644 4556899999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.001 Score=61.62 Aligned_cols=65 Identities=31% Similarity=0.556 Sum_probs=53.0
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHhhcCCCCchhhhhHH
Q 012925 48 DFDLYDLLGIDSS--SDQSQIKTAYRMLQKRCHPDIAGSA-------GHDMAIILNEAYSVLSDPNSRLAYDKE 112 (453)
Q Consensus 48 ~~DyYevLGV~~~--As~~eIKkAYRklalk~HPDk~~~~-------a~~~f~~I~eAYevLsDp~kR~~YD~~ 112 (453)
..+||.++|.... ..++-++.-|.-..++.|||+.... +.+...+||+||.+|.||-+|+.|=..
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk 80 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK 80 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4689999986654 5677777799999999999995322 456678999999999999999999754
No 69
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=96.67 E-value=0.00033 Score=56.60 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=38.2
Q ss_pred hcccceecccCcccccccCceeeeecccCccee------ecccCCC-CCCCcc-ccccce--EEEe
Q 012925 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARV------VAQWADP-EHNPGS-YRNVPS--RLIV 196 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV------~~Q~~d~-E~~iq~-IqsCPv--Is~V 196 (453)
+.+|...||||+.|...++..|..+++ |.+++ ..+..+. ++.++. +.+||+ |+|.
T Consensus 3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 567888999999999999999998875 44432 1122111 233445 789999 8775
No 70
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=96.64 E-value=0.00036 Score=55.00 Aligned_cols=54 Identities=26% Similarity=0.546 Sum_probs=38.8
Q ss_pred hcccceecccCcccccccCceeeeecccCcceeecccCC--------CCCCCcc-ccccce--EEE
Q 012925 141 VFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWAD--------PEHNPGS-YRNVPS--RLI 195 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d--------~E~~iq~-IqsCPv--Is~ 195 (453)
|.+|...|+||+.|...++..|.+++. |.+++....++ ..+.++. ++.||+ |+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 467888999999999999999999976 77766542111 1123444 678998 654
No 71
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=96.42 E-value=0.00037 Score=54.12 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=35.0
Q ss_pred ccceecccCcccccccCceeeeecccCcceeecccCCCC--CCCcc-ccccce--EE
Q 012925 143 VDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPE--HNPGS-YRNVPS--RL 194 (453)
Q Consensus 143 vDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E--~~iq~-IqsCPv--Is 194 (453)
||...|++|+.|...+|..|.+++..|...+..|....+ +.... ++.||+ |+
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~ 57 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIR 57 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence 455689999999999999999998878777766654432 23444 778998 54
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0062 Score=57.12 Aligned_cols=53 Identities=34% Similarity=0.475 Sum_probs=45.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------hHHHHHHHHHHHhhc
Q 012925 48 DFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA---------GHDMAIILNEAYSVL 100 (453)
Q Consensus 48 ~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~---------a~~~f~~I~eAYevL 100 (453)
..|.|.+||+.......+|+++||++...+|||+.... ..+++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999999985321 367788899998753
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.20 E-value=0.051 Score=58.48 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 012925 56 GIDSSSDQSQIKTAYRMLQKRCHPDIAGSA 85 (453)
Q Consensus 56 GV~~~As~~eIKkAYRklalk~HPDk~~~~ 85 (453)
++..=.+.++|||+|||..|..||||.+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCC
Confidence 334446899999999999999999998644
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.026 Score=52.94 Aligned_cols=64 Identities=34% Similarity=0.475 Sum_probs=50.0
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 50 DLYDLLGIDSSS--DQSQIKTAYRMLQKRCHPDIAGSAG-------HDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 50 DyYevLGV~~~A--s~~eIKkAYRklalk~HPDk~~~~a-------~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
||+..+|..+.. ..+.++..|+.+++.+|||+....+ -+.+..+|.||.+|.||-+|..|=...
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal 74 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL 74 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 455666666654 4566899999999999999986332 346789999999999999999997643
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=89.82 E-value=0.55 Score=42.46 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925 46 NMDFDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS 101 (453)
Q Consensus 46 ~~~~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs 101 (453)
++-..-.+||||++..+.++|.+.|.+|-...+|++.+. .-.-.+|..|.+.|.
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS--fYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS--FYLQSKVFRAKERLE 108 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC--HHHHHHHHHHHHHHH
Confidence 444567789999999999999999999999999998642 233347888888885
No 76
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=78.31 E-value=0.66 Score=29.79 Aligned_cols=18 Identities=28% Similarity=0.868 Sum_probs=15.0
Q ss_pred hcccceecccCccccccc
Q 012925 141 VFVDEVKCVGCLKCALFA 158 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a 158 (453)
+++|..+|+||+.|...+
T Consensus 3 ~~iD~~rCiGC~~C~~AC 20 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVAC 20 (22)
T ss_pred eEEccccccCchhHHHhh
Confidence 578999999999997544
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=78.23 E-value=2.4 Score=43.38 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC------chHHHHHHHHHHHhhcCCCCchhhhhHHH
Q 012925 61 SDQSQIKTAYRMLQKRCHPDIAGS------AGHDMAIILNEAYSVLSDPNSRLAYDKEQ 113 (453)
Q Consensus 61 As~~eIKkAYRklalk~HPDk~~~------~a~~~f~~I~eAYevLsDp~kR~~YD~~g 113 (453)
++..+|+.+|+..++.+|||+... ...+.|+.|.+||.+|++..+|..+|..-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 577899999999999999998742 24677899999999999977777777654
No 78
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=72.26 E-value=4.1 Score=42.37 Aligned_cols=62 Identities=16% Similarity=0.323 Sum_probs=35.6
Q ss_pred hhcccceecccCcccccccCce---eeeecccCcceeecccCC----C--CCCCcc-ccccce--EEEeccccH
Q 012925 140 AVFVDEVKCVGCLKCALFAGKT---FAIESAYGRARVVAQWAD----P--EHNPGS-YRNVPS--RLIVERSDL 201 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~t---Faie~~~GRARV~~Q~~d----~--E~~iq~-IqsCPv--Is~Ver~~l 201 (453)
.+.+|...|++|+.|...++.. |..+...+...-..-+.+ . .+.... ++.||. |.+.++.++
T Consensus 137 ~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el 210 (328)
T PRK10882 137 IVHYDKDVCTGCRYCMVACPFNVPKYDYNNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREEL 210 (328)
T ss_pred cccCCHHHcCcccHHHHhCCccceeccccccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHH
Confidence 4567888999999999988742 222211122111112222 1 122334 889999 877777776
No 79
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.65 E-value=6.6 Score=30.48 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=23.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHH
Q 012925 50 DLYDLLGIDSSSDQSQIKTAYRMLQK 75 (453)
Q Consensus 50 DyYevLGV~~~As~~eIKkAYRklal 75 (453)
+-|+.|||+++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998876
No 80
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=69.69 E-value=2.6 Score=39.78 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=35.4
Q ss_pred hhhcccceecccCcccccccCc-eeeeecccCcceee----cccCCCCCCCcc-ccccce--EEEec
Q 012925 139 RAVFVDEVKCVGCLKCALFAGK-TFAIESAYGRARVV----AQWADPEHNPGS-YRNVPS--RLIVE 197 (453)
Q Consensus 139 ~~vFvDE~~CIGC~kCsl~a~~-tFaie~~~GRARV~----~Q~~d~E~~iq~-IqsCPv--Is~Ve 197 (453)
..+.+|+.+||||+.|...++- .+.+.+...+.+.. ....+.+.. .. ++.||. +.+++
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~g-paCVe~CP~~AL~lv~ 140 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVG-PACVEACPTEALELVD 140 (165)
T ss_pred CceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCC-CceeeeCCHHHhhccc
Confidence 3578999999999999999984 22333221111111 222333433 56 999999 66665
No 81
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=61.20 E-value=15 Score=35.47 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHhhcC
Q 012925 58 DSSSDQSQIKTAYRMLQKRCHPDIAGSAGHDMAIILNEAYSVLS 101 (453)
Q Consensus 58 ~~~As~~eIKkAYRklalk~HPDk~~~~a~~~f~~I~eAYevLs 101 (453)
+++|+.|||++|+.++..+|--|. +.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHH
Confidence 478999999999999999984442 34557888998664
No 82
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=60.08 E-value=2 Score=27.86 Aligned_cols=20 Identities=35% Similarity=0.825 Sum_probs=16.4
Q ss_pred hcccceecccCcccccccCc
Q 012925 141 VFVDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~ 160 (453)
+.+|+..|+||+.|...++.
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 35788899999999987763
No 83
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=55.23 E-value=7.8 Score=46.66 Aligned_cols=59 Identities=29% Similarity=0.496 Sum_probs=37.5
Q ss_pred hhcccceecccCccccc-c-cCceeeeecccCcceeecccCCCCCCCcc-cc-ccceEEEecccc
Q 012925 140 AVFVDEVKCVGCLKCAL-F-AGKTFAIESAYGRARVVAQWADPEHNPGS-YR-NVPSRLIVERSD 200 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl-~-a~~tFaie~~~GRARV~~Q~~d~E~~iq~-Iq-sCPvIs~Ver~~ 200 (453)
.+|+|+..|.||+.|.. . |+...-.++.+|+-+.+.|-. -...-. ++ -||...-|+.+.
T Consensus 651 r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs~--Cn~d~sC~~G~CPsFvtv~g~~ 713 (1186)
T PRK13029 651 RVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQSS--CNKDFSCVKGFCPSFVTVEGAQ 713 (1186)
T ss_pred cEEEcccccCCchhhhhccCCceeeeccccCCccEEECHhH--CCCccccccCCCCCceeecCCc
Confidence 58999999999999985 2 333333456678866666632 122333 55 799955555443
No 84
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=54.99 E-value=7.7 Score=39.53 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=43.2
Q ss_pred hhcccceecccCcccccccCc-eeeeecccCcceeecccCCC--CCCCcc-ccccce--EEEeccccHHHHHH-HHhhCC
Q 012925 140 AVFVDEVKCVGCLKCALFAGK-TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPS--RLIVERSDLAALEY-LMAKQP 212 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~-tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPv--Is~Ver~~laaLef-lm~~~P 212 (453)
.+.+|...|+||+.|...++. ...++...+...-..-..+. .+.... ++.||. |.+.++.++..... .+...+
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a~~r~~~~~ 197 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRVADLK 197 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHHHHHHHhcc
Confidence 467888899999999988875 23333322222111112221 122234 889999 99998888855444 344444
No 85
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=53.05 E-value=2.9 Score=35.97 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=30.8
Q ss_pred hhhcccceecccCcccccccCc-eeeeecccCcceeecccCCC--CCCCcc-ccccce--EEEec
Q 012925 139 RAVFVDEVKCVGCLKCALFAGK-TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPS--RLIVE 197 (453)
Q Consensus 139 ~~vFvDE~~CIGC~kCsl~a~~-tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPv--Is~Ve 197 (453)
..|.+|+..|+||+.|...++- ...++...+...-..-..+. ++.... ++.||. |.+.+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 3578899999999999988874 22344434433222222111 233355 889998 66654
No 86
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=51.65 E-value=10 Score=45.73 Aligned_cols=56 Identities=30% Similarity=0.505 Sum_probs=31.5
Q ss_pred hhcccceecccCccccc-c-cCceeeeecccCcceeecccCCCCCCCcc-cc-ccceEEEec
Q 012925 140 AVFVDEVKCVGCLKCAL-F-AGKTFAIESAYGRARVVAQWADPEHNPGS-YR-NVPSRLIVE 197 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl-~-a~~tFaie~~~GRARV~~Q~~d~E~~iq~-Iq-sCPvIs~Ve 197 (453)
.+|+|+..|.||+.|.. . |+...-.++.+|+-+.+.|-.- ...-. ++ -||...-|+
T Consensus 637 r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs~C--n~d~sC~~G~CPsFvtv~ 696 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQSSC--NKDFSCLKGFCPSFVTVE 696 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCCccEEECHhHC--CCccccccCCCCCceeec
Confidence 57888889999999885 2 3332234555676555554211 22222 44 577644444
No 87
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=50.59 E-value=31 Score=30.56 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHhhcCCC
Q 012925 60 SSDQSQIKTAYRMLQKRCHPDIAGSA------GHDMAIILNEAYSVLSDP 103 (453)
Q Consensus 60 ~As~~eIKkAYRklalk~HPDk~~~~------a~~~f~~I~eAYevLsDp 103 (453)
..+..++|.|.|..-++.|||..... .++.++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999976532 245566666655555543
No 88
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=41.13 E-value=22 Score=30.29 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=17.9
Q ss_pred hhcccceecccCcccccccCc
Q 012925 140 AVFVDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~ 160 (453)
.+.+|+..|++|+.|...++.
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~ 30 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPA 30 (103)
T ss_pred CeEECcccccCCcchhhhcCh
Confidence 456788899999999998875
No 89
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=40.91 E-value=24 Score=34.53 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=34.6
Q ss_pred hhhcccceecccCcccccccCc---eeeeecccCcceeecccCCC--CCCCcc-ccccce--EEEeccccH
Q 012925 139 RAVFVDEVKCVGCLKCALFAGK---TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPS--RLIVERSDL 201 (453)
Q Consensus 139 ~~vFvDE~~CIGC~kCsl~a~~---tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPv--Is~Ver~~l 201 (453)
..|-+|...||||+.|..-++- .|.. ..|......-..+. ++..-. +++||. +.+.+-+++
T Consensus 93 GiV~vd~d~CIGC~yCi~ACPyga~~~~~--~~~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~ 161 (203)
T COG0437 93 GIVLVDKDLCIGCGYCIAACPYGAPQFNP--DKGVVDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDP 161 (203)
T ss_pred CEEEecCCcccCchHHHhhCCCCCceeCc--ccCcccccCcchhhHhcCCCCcccccCCcccccccchhhc
Confidence 3577888999999999987763 2322 12211111111111 234445 999999 665554444
No 90
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=40.03 E-value=19 Score=43.52 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=33.5
Q ss_pred hhcccceecccCccccc-c-cCceeeeecccCcceeecccCCCCCCCcc-cc-ccceEEEec
Q 012925 140 AVFVDEVKCVGCLKCAL-F-AGKTFAIESAYGRARVVAQWADPEHNPGS-YR-NVPSRLIVE 197 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl-~-a~~tFaie~~~GRARV~~Q~~d~E~~iq~-Iq-sCPvIs~Ve 197 (453)
.+|+|+..|.||+.|.. . |+.....++.+|+-+.+.|-. -..... ++ -||-..-|+
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~s~--Cn~~~~C~~G~CPsfvtv~ 682 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQSS--CNKDFSCVNGFCPSFVTVE 682 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCCccEEECHHH--CCCccccccCCCCCCeEec
Confidence 58999999999999985 2 333222345567755555521 122233 55 688844444
No 91
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.72 E-value=36 Score=27.02 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=36.9
Q ss_pred cccHHHHHHHhhheeeeeccccccccccccccceeeeeechhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012925 382 GIPIVTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVELIEVI 448 (453)
Q Consensus 382 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~w~~~g~~~~~~~~~~ 448 (453)
++-+.++=++-++.+||..++..+.+-+-..|+..- =++||+||-+++-++-.+
T Consensus 4 gi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~-------------~t~~~ligG~va~ivGl~ 57 (59)
T PF11381_consen 4 GIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD-------------KTIWYLIGGAVAVIVGLF 57 (59)
T ss_pred eehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc-------------hhHHHHHhHHHHHHHHHh
Confidence 344445555556678888888877777776666542 257999999988776543
No 92
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=34.40 E-value=55 Score=32.01 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=42.7
Q ss_pred hcccceecccCcccccccCceee-eecccCcceeecccCC---CCCCCcc-ccccce--EEEeccccH-HHHHHHHhhCC
Q 012925 141 VFVDEVKCVGCLKCALFAGKTFA-IESAYGRARVVAQWAD---PEHNPGS-YRNVPS--RLIVERSDL-AALEYLMAKQP 212 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~tFa-ie~~~GRARV~~Q~~d---~E~~iq~-IqsCPv--Is~Ver~~l-aaLeflm~~~P 212 (453)
+.+|...|++|+.|...++..-. ++...+...-..-.++ .++.... ++.||. |.+.+..+. ..+..++...+
T Consensus 120 v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~~~~~~~~~~~~~ 199 (225)
T TIGR03149 120 VDVHKDLCVGCQYCIAACPYRVRFIHPVTKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDPNSEVSQKLKQKP 199 (225)
T ss_pred EEechhhCCcchHHHHhCCCCCcEecCCCCccccCCCCCcchhhCCCCCcccccCccCCEEEecccccHHHHHHHHhcCC
Confidence 44677899999999988874221 1111111111111111 1122235 899999 888887765 55555665665
Q ss_pred Cccee
Q 012925 213 RGTVR 217 (453)
Q Consensus 213 ~~~l~ 217 (453)
.+.+.
T Consensus 200 ~~~~~ 204 (225)
T TIGR03149 200 VYRTK 204 (225)
T ss_pred ceecc
Confidence 55543
No 93
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=33.36 E-value=10 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=13.8
Q ss_pred ccceecccCcccccccCc
Q 012925 143 VDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 143 vDE~~CIGC~kCsl~a~~ 160 (453)
+|...|++|+.|...++.
T Consensus 3 id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 3 IDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EETTTSSS-THHHHHSTT
T ss_pred EchHHCCCcchhhhhccc
Confidence 577899999999877764
No 94
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=32.02 E-value=1e+02 Score=25.71 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=37.1
Q ss_pred cccHHHHHHHhhheee-eeccccccccccc-cccceeeeeechhHHHHHHHHHHHHHHH
Q 012925 382 GIPIVTAAIAAAMVRM-QVDQGVSDGLKEH-VGGSLALIIVNSSWLQVMLAGITWYFIG 438 (453)
Q Consensus 382 ~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~~w~~~g 438 (453)
-|=+..++++|+..+- -++.|- +++.-. .||+..+-+.-|.|+-|+.-...|.+|=
T Consensus 19 viyli~sil~afs~~sli~~~gf-~~is~s~sg~a~g~~~lgsifqsvlvf~giwvfil 76 (87)
T PF13140_consen 19 VIYLIVSILMAFSAGSLIHNPGF-GEISISGSGGAIGIIILGSIFQSVLVFCGIWVFIL 76 (87)
T ss_pred HHHHHHHHHHHHhccccccCCCC-CeeEeecCCceeeeeehHHHHHHHHHHHHHHHHHH
Confidence 3556777777776543 222222 333322 3567788888999999998999999884
No 95
>COG1146 Ferredoxin [Energy production and conversion]
Probab=31.96 E-value=44 Score=26.19 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=17.9
Q ss_pred cccceecccCcccccccCc-eeeeec
Q 012925 142 FVDEVKCVGCLKCALFAGK-TFAIES 166 (453)
Q Consensus 142 FvDE~~CIGC~kCsl~a~~-tFaie~ 166 (453)
.+|...|+||+.|...++. .|.+..
T Consensus 4 ~Id~~~C~~c~~C~~~CP~~~~~~~~ 29 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPAGVFDLGE 29 (68)
T ss_pred EECchhcCCCChheeccChhhEEecc
Confidence 3566778999999988886 455443
No 96
>PF09320 DUF1977: Domain of unknown function (DUF1977); InterPro: IPR015399 This C-terminal domain is functionally uncharacterised and predominantly found in Dnaj-like proteins.
Probab=30.78 E-value=19 Score=31.07 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=31.4
Q ss_pred HHHHHhhCCCcceeeccccccCcccccc----eechhhHHHHHH
Q 012925 204 LEYLMAKQPRGTVRVGAGNTAGARVSNI----FVDVKKFQTQYE 243 (453)
Q Consensus 204 Leflm~~~P~~~l~~~ag~~~g~~~~nv----fv~~~~F~~~~~ 243 (453)
|..|++..|.+++....++.+.+.|.++ ||.. +|.+.|.
T Consensus 2 ~s~l~s~~P~yS~~~s~~y~~~R~T~~~~V~YYV~~-~f~~~y~ 44 (107)
T PF09320_consen 2 LSSLFSSDPSYSFTPSSPYTVERTTPNLKVPYYVNP-DFVQKYS 44 (107)
T ss_pred ccccCCCCCCeeecCCCCCceeeEcCCCCcceeECc-hhhhhcC
Confidence 5678888999999888888888777664 8885 8988883
No 97
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=28.63 E-value=70 Score=36.69 Aligned_cols=58 Identities=10% Similarity=0.340 Sum_probs=30.5
Q ss_pred hcccceecccCcccccccCc-----eeeeecccCcceeecccCCC--CCCCcc-ccccceEEEecc
Q 012925 141 VFVDEVKCVGCLKCALFAGK-----TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPSRLIVER 198 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~-----tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPvIs~Ver 198 (453)
+..|-++||-|+.|.-++.. .+.+.......++....+.. ...... ++.||+-.+.++
T Consensus 139 i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 139 ISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred eeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCccccccc
Confidence 34577899999999876643 22322221222332221111 122345 888999666554
No 98
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=28.06 E-value=28 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.3
Q ss_pred hhcccceecccCcccccccCc
Q 012925 140 AVFVDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~ 160 (453)
.+.+|...|+||+.|...++.
T Consensus 55 ~V~vd~e~CigCg~C~~~C~~ 75 (95)
T PRK15449 55 SVRFDYAGCLECGTCRILGLG 75 (95)
T ss_pred CEEEcCCCCCcchhhhhhcCC
Confidence 578899999999999988754
No 99
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=26.79 E-value=37 Score=32.51 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=38.8
Q ss_pred cccccCCcchhhhhcccceecccCcccccccCc---eeeeecc-cCcceeecccCCCCC--CCcc-ccccceEEEec
Q 012925 128 YSVWFGSESEQRAVFVDEVKCVGCLKCALFAGK---TFAIESA-YGRARVVAQWADPEH--NPGS-YRNVPSRLIVE 197 (453)
Q Consensus 128 fs~ffG~~~~~~~vFvDE~~CIGC~kCsl~a~~---tFaie~~-~GRARV~~Q~~d~E~--~iq~-IqsCPvIs~Ve 197 (453)
.|..|.|+.--+.+-..+.+||.|.-|..+++. +...+.. .|..|...-.-|-.. .... ++.|||=.+|+
T Consensus 93 lS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaive 169 (212)
T KOG3256|consen 93 LSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 169 (212)
T ss_pred CCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceec
Confidence 455665543333445667799999999999885 3444332 343333222222211 2334 67899944443
No 100
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=26.45 E-value=22 Score=27.63 Aligned_cols=18 Identities=44% Similarity=0.920 Sum_probs=11.4
Q ss_pred ccceecccCcccccccCc
Q 012925 143 VDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 143 vDE~~CIGC~kCsl~a~~ 160 (453)
+|+.+|+||+.|....+.
T Consensus 3 Id~~~Ci~Cg~C~~~Cp~ 20 (59)
T PF14697_consen 3 IDEDKCIGCGKCVRACPD 20 (59)
T ss_dssp E-TTT----SCCCHHCCC
T ss_pred ECcccccChhhHHhHcCc
Confidence 678899999999999985
No 101
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=26.41 E-value=17 Score=28.94 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=34.5
Q ss_pred hhcccceecccCcccccccCceeeeecccCcceeecccCCCCCCCcc-ccccce--EEEe
Q 012925 140 AVFVDEVKCVGCLKCALFAGKTFAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLIV 196 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~tFaie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~V 196 (453)
.|..|...|++=+.|...++..|...+. |. +.......+.+.. +..||. +.+.
T Consensus 7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~---v~~d~a~~~~v~~~v~~CPSGAL~~~ 62 (64)
T PF06902_consen 7 TVTWDRERCIHAGFCVRGAPEVFDQDDE-PW---VSPDEASAEEVREAVDRCPSGALSYW 62 (64)
T ss_pred EEEECcCcccchhhhhcCCCCcccCCCC-Cc---CCcCccCHHHHHHHHHcCCccCcEEe
Confidence 4677778999999999999999987654 21 1121222223333 788998 5443
No 102
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=26.20 E-value=27 Score=25.58 Aligned_cols=20 Identities=35% Similarity=0.899 Sum_probs=8.2
Q ss_pred hcccceecccCcccccccCc
Q 012925 141 VFVDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~ 160 (453)
+.+|...|++|+.|....|.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 56788999999999999987
No 103
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=25.86 E-value=39 Score=20.06 Aligned_cols=14 Identities=29% Similarity=0.899 Sum_probs=11.3
Q ss_pred ecccCcccccccCc
Q 012925 147 KCVGCLKCALFAGK 160 (453)
Q Consensus 147 ~CIGC~kCsl~a~~ 160 (453)
.|++|+.|....+.
T Consensus 3 ~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 3 RCIGCGSCVDVCPT 16 (17)
T ss_dssp CCTTSSSSTTTSTT
T ss_pred cCCCCchHHhhccC
Confidence 68999999877653
No 104
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=25.66 E-value=48 Score=32.94 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=37.4
Q ss_pred hhcccceecccCcccccccCc-eeeeecccCcceeecccCCC--CCCCcc-ccccce--EEEeccccH-HHHHHHH
Q 012925 140 AVFVDEVKCVGCLKCALFAGK-TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPS--RLIVERSDL-AALEYLM 208 (453)
Q Consensus 140 ~vFvDE~~CIGC~kCsl~a~~-tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPv--Is~Ver~~l-aaLeflm 208 (453)
.+.+|...|+||+.|...++. ...++...+...-..-..+. ++.... ++.||. +.+.+..+. +.++.++
T Consensus 124 ~v~id~~~CigC~~Cv~aCP~~Ai~~~~~~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~~~s~~~~~~ 199 (244)
T PRK14993 124 IVVVDNKRCVGCAYCVQACPYDARFINHETQTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHSRIATML 199 (244)
T ss_pred CEEEcHHHCCCHHHHHHhcCCCCCEEeCCCCCcccCcCCcchhhCCCCcccchhcccCCEEEcccccchHHHHHHH
Confidence 456788899999999988874 22222221111111111111 112234 889999 777665655 3444444
No 105
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=22.79 E-value=42 Score=37.27 Aligned_cols=59 Identities=12% Similarity=0.325 Sum_probs=33.8
Q ss_pred hcccceecccCcccccccCc-----eeeeecccCcceeecccCCC--CCCCcc-ccccceEEEeccc
Q 012925 141 VFVDEVKCVGCLKCALFAGK-----TFAIESAYGRARVVAQWADP--EHNPGS-YRNVPSRLIVERS 199 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~-----tFaie~~~GRARV~~Q~~d~--E~~iq~-IqsCPvIs~Ver~ 199 (453)
+..|.++||-|+.|.-.+.. .+.+.......++....++. ...... ++.||+-.+.++.
T Consensus 137 i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 137 IKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred eEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 45688899999999877643 33433322223332222211 123445 8899996666644
No 106
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=22.74 E-value=54 Score=29.51 Aligned_cols=21 Identities=14% Similarity=0.627 Sum_probs=17.0
Q ss_pred hcccceecccCcccccccCce
Q 012925 141 VFVDEVKCVGCLKCALFAGKT 161 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~t 161 (453)
..+|...|++|+.|...++..
T Consensus 54 p~~d~~~Ci~C~~C~~~CP~~ 74 (133)
T PRK09625 54 PVHNNEICINCFNCWVYCPDA 74 (133)
T ss_pred EEEehhHCcChhhHHHhCCHh
Confidence 346778999999999998853
No 107
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=22.59 E-value=2.4e+02 Score=23.66 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=26.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHh----CCCCC
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRC----HPDIA 82 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~----HPDk~ 82 (453)
.|.-+++|++|-++..||+.|-++..++. ||...
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~ 40 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAA 40 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchh
Confidence 56668899999999999999876666665 66554
No 108
>COG3671 Predicted membrane protein [Function unknown]
Probab=22.40 E-value=1.1e+02 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHhhheeeeeccccccccccccccceeeeeechhHHHHHHHHHHHHHHHHHHHH
Q 012925 386 VTAAIAAAMVRMQVDQGVSDGLKEHVGGSLALIIVNSSWLQVMLAGITWYFIGAAVVE 443 (453)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~w~~~g~~~~~ 443 (453)
.|.+||++++=++.+ .+|+++.+ -=-+-..-|--++.|++||....-
T Consensus 39 it~lvgvi~AYv~rd----------~~~~~~~S-Hy~f~iRTFw~~vl~~iIg~Llt~ 85 (125)
T COG3671 39 ITPLVGVIFAYVNRD----------KADSIAAS-HYEFLIRTFWLAVLWWIIGLLLTF 85 (125)
T ss_pred HHHHHHHHHHhcccc----------cccchHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888887777666 46666554 001111224446678888876543
No 109
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=22.29 E-value=48 Score=30.03 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=34.9
Q ss_pred hcccceecccCc-----ccccccCce-eeeecccCcceeecccCCCCCCCcc-ccccce--EEEeccccHHHH
Q 012925 141 VFVDEVKCVGCL-----KCALFAGKT-FAIESAYGRARVVAQWADPEHNPGS-YRNVPS--RLIVERSDLAAL 204 (453)
Q Consensus 141 vFvDE~~CIGC~-----kCsl~a~~t-Faie~~~GRARV~~Q~~d~E~~iq~-IqsCPv--Is~Ver~~laaL 204 (453)
.++++..|+||+ .|...++.. +.++. +.........+.-..-.. +..||. |.+....++..+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~--~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDT--EIMKAYNIEPDMCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecC--CCceeeecCchhCccHHHHHHhCCcCceEEECccccccc
Confidence 467888999999 999988863 23332 111111111111112334 778998 777765555444
No 110
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.82 E-value=2.8e+02 Score=23.27 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=35.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHH----HHHHHHHhhcCC
Q 012925 49 FDLYDLLGIDSSSDQSQIKTAYRMLQKRCHPDIAGSA-GHDMA----IILNEAYSVLSD 102 (453)
Q Consensus 49 ~DyYevLGV~~~As~~eIKkAYRklalk~HPDk~~~~-a~~~f----~~I~eAYevLsD 102 (453)
.|--.+.|+.|-+|.+||..|-.+..+|..--..+.. ..+.| ..|..+-.-|.|
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445567889999999999998888888765444322 23444 355555554443
No 111
>CHL00065 psaC photosystem I subunit VII
Probab=20.32 E-value=57 Score=26.34 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=14.7
Q ss_pred ccceecccCcccccccCc
Q 012925 143 VDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 143 vDE~~CIGC~kCsl~a~~ 160 (453)
.+...|++|+.|...++.
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~ 23 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPT 23 (81)
T ss_pred CccccCCChhHHHHHCCc
Confidence 345689999999999884
No 112
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.22 E-value=98 Score=34.77 Aligned_cols=20 Identities=30% Similarity=0.781 Sum_probs=17.3
Q ss_pred hcccceecccCcccccccCc
Q 012925 141 VFVDEVKCVGCLKCALFAGK 160 (453)
Q Consensus 141 vFvDE~~CIGC~kCsl~a~~ 160 (453)
+.+|...|++|+.|...++.
T Consensus 80 ~~id~~~C~~C~~C~~~CP~ 99 (654)
T PRK12769 80 IQVNQQKCIGCKSCVVACPF 99 (654)
T ss_pred EEEecccccCcChhcccCCc
Confidence 56788899999999999885
Done!