Query 012927
Match_columns 453
No_of_seqs 131 out of 1159
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 6.4E-59 1.4E-63 446.3 28.5 388 25-447 44-449 (449)
2 KOG1303 Amino acid transporter 100.0 5.6E-58 1.2E-62 448.1 33.1 401 22-450 32-437 (437)
3 PTZ00206 amino acid transporte 100.0 1.7E-56 3.8E-61 450.4 30.7 391 27-448 59-465 (467)
4 PF01490 Aa_trans: Transmembra 100.0 7.6E-54 1.7E-58 429.3 -2.1 399 26-444 1-408 (409)
5 PLN03074 auxin influx permease 100.0 1.3E-48 2.8E-53 391.4 30.5 389 26-452 44-456 (473)
6 KOG1305 Amino acid transporter 100.0 1.6E-45 3.6E-50 358.8 26.5 393 25-450 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 3.7E-43 8.1E-48 317.8 8.2 405 22-453 111-520 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.6E-32 3.5E-37 271.4 31.1 391 24-443 5-411 (415)
9 PRK10483 tryptophan permease; 99.9 8.9E-25 1.9E-29 212.7 29.9 354 23-415 6-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.3E-24 2.9E-29 213.7 30.5 350 26-417 1-367 (394)
11 PRK09664 tryptophan permease T 99.9 1.7E-24 3.8E-29 210.5 30.7 354 25-415 6-374 (415)
12 PRK15132 tyrosine transporter 99.9 1E-23 2.2E-28 206.4 30.4 368 28-437 3-389 (403)
13 TIGR00837 araaP aromatic amino 99.9 4E-23 8.7E-28 204.8 23.5 343 34-415 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 7.4E-21 1.6E-25 185.2 31.6 378 32-435 23-434 (443)
15 TIGR00814 stp serine transport 99.9 2.5E-19 5.3E-24 176.1 25.0 364 30-419 5-383 (397)
16 PRK10655 potE putrescine trans 99.6 8.1E-13 1.8E-17 133.5 32.9 241 24-280 4-245 (438)
17 PRK10644 arginine:agmatin anti 99.6 3.5E-12 7.6E-17 129.1 32.7 241 23-281 5-248 (445)
18 PRK15049 L-asparagine permease 99.6 5.9E-12 1.3E-16 128.9 33.4 246 24-282 26-278 (499)
19 PRK10435 cadB lysine/cadaverin 99.6 5.2E-12 1.1E-16 127.4 32.5 244 23-283 2-246 (435)
20 PRK10249 phenylalanine transpo 99.6 1.4E-11 3.1E-16 125.0 34.1 243 23-280 18-265 (458)
21 TIGR01773 GABAperm gamma-amino 99.5 1.6E-11 3.4E-16 124.7 32.5 245 22-281 8-258 (452)
22 TIGR03810 arg_ornith_anti argi 99.5 1.8E-11 3.9E-16 124.7 32.8 249 26-284 1-254 (468)
23 PRK10238 aromatic amino acid t 99.5 2.4E-11 5.1E-16 123.3 31.4 242 20-275 6-251 (456)
24 PRK10746 putative transport pr 99.5 3.1E-11 6.7E-16 122.5 31.6 368 23-415 7-388 (461)
25 PRK11049 D-alanine/D-serine/gl 99.5 4.1E-11 9E-16 122.0 32.3 244 23-280 17-267 (469)
26 PRK11387 S-methylmethionine tr 99.5 5.1E-11 1.1E-15 121.5 32.8 248 23-283 11-265 (471)
27 TIGR00905 2A0302 transporter, 99.5 6.2E-11 1.3E-15 120.9 32.7 246 25-281 6-255 (473)
28 PRK11021 putative transporter; 99.5 1.5E-10 3.2E-15 116.1 33.0 228 29-278 2-231 (410)
29 TIGR00906 2A0303 cationic amin 99.5 3.9E-11 8.4E-16 124.2 28.9 247 21-279 23-286 (557)
30 PRK10580 proY putative proline 99.5 2.6E-10 5.6E-15 115.9 33.8 242 23-278 6-253 (457)
31 TIGR00909 2A0306 amino acid tr 99.5 2.9E-11 6.3E-16 122.0 26.1 238 25-281 2-252 (429)
32 PRK10836 lysine transporter; P 99.5 5.7E-10 1.2E-14 114.3 34.9 248 22-282 11-263 (489)
33 TIGR00911 2A0308 L-type amino 99.4 6.7E-11 1.5E-15 121.6 28.1 248 23-282 39-293 (501)
34 TIGR00913 2A0310 amino acid pe 99.4 5.5E-10 1.2E-14 114.3 34.3 241 26-278 2-251 (478)
35 PF13520 AA_permease_2: Amino 99.4 3.8E-10 8.2E-15 113.8 30.0 289 29-335 2-304 (426)
36 KOG1287 Amino acid transporter 99.4 2.6E-11 5.7E-16 118.9 19.8 368 23-416 9-387 (479)
37 TIGR00912 2A0309 spore germina 99.4 1.2E-10 2.5E-15 114.7 24.2 237 27-286 2-240 (359)
38 TIGR00908 2A0305 ethanolamine 99.4 3.3E-10 7.2E-15 114.7 26.6 236 24-277 5-244 (442)
39 PRK11357 frlA putative fructos 99.4 9.7E-10 2.1E-14 111.4 29.1 243 23-279 5-250 (445)
40 PRK10197 gamma-aminobutyrate t 99.4 1.6E-09 3.4E-14 109.7 30.1 346 38-414 4-367 (446)
41 TIGR00930 2a30 K-Cl cotranspor 99.3 9.4E-10 2E-14 119.3 29.5 244 25-278 75-334 (953)
42 COG1113 AnsP Gamma-aminobutyra 99.2 9.9E-09 2.1E-13 99.4 25.0 362 24-414 11-388 (462)
43 COG0531 PotE Amino acid transp 99.2 3.6E-08 7.9E-13 100.5 30.9 248 23-285 9-262 (466)
44 TIGR03428 ureacarb_perm permea 99.1 2.9E-07 6.3E-12 94.1 33.7 249 24-284 11-273 (475)
45 TIGR00907 2A0304 amino acid pe 99.1 1.2E-07 2.6E-12 97.2 27.4 243 24-276 10-269 (482)
46 PRK15238 inner membrane transp 99.0 5.1E-07 1.1E-11 92.8 30.7 241 25-279 6-266 (496)
47 TIGR00910 2A0307_GadC glutamat 99.0 3E-07 6.4E-12 94.5 28.8 236 25-277 3-247 (507)
48 TIGR03813 put_Glu_GABA_T putat 99.0 4.7E-07 1E-11 92.6 29.3 53 229-284 202-254 (474)
49 PF03845 Spore_permease: Spore 98.9 5.2E-07 1.1E-11 87.3 23.9 235 27-286 1-236 (320)
50 KOG3832 Predicted amino acid t 98.9 2.2E-08 4.7E-13 85.9 10.6 212 29-249 13-301 (319)
51 PF00324 AA_permease: Amino ac 98.8 4.5E-08 9.8E-13 100.2 13.6 239 38-286 7-262 (478)
52 COG0833 LysP Amino acid transp 98.8 8.3E-06 1.8E-10 81.2 26.7 362 25-413 43-426 (541)
53 KOG1286 Amino acid transporter 98.4 2.1E-06 4.6E-11 87.8 12.9 298 24-334 28-351 (554)
54 KOG1289 Amino acid transporter 98.4 4.1E-05 8.9E-10 76.2 18.7 116 169-287 196-315 (550)
55 COG3949 Uncharacterized membra 98.3 0.0006 1.3E-08 63.8 24.6 136 30-177 5-143 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.00047 1E-08 69.8 26.0 184 96-287 76-274 (442)
57 PRK11375 allantoin permease; P 98.2 0.0013 2.9E-08 67.1 26.1 228 94-333 87-340 (484)
58 PRK09442 panF sodium/panthothe 98.1 0.012 2.7E-07 60.3 32.6 149 25-184 40-193 (483)
59 PF00474 SSF: Sodium:solute sy 98.1 0.001 2.2E-08 66.6 22.4 148 25-184 5-155 (406)
60 COG1457 CodB Purine-cytosine p 98.0 0.0045 9.7E-08 61.4 25.5 208 97-325 82-292 (442)
61 TIGR02119 panF sodium/pantothe 97.9 0.034 7.4E-07 56.9 31.4 149 25-184 39-192 (471)
62 TIGR02358 thia_cytX probable h 97.9 0.014 3E-07 57.9 27.3 175 96-286 58-234 (386)
63 TIGR00813 sss transporter, SSS 97.9 0.01 2.3E-07 59.4 26.1 147 26-184 3-151 (407)
64 COG0591 PutP Na+/proline sympo 97.8 0.05 1.1E-06 55.8 32.5 111 25-142 37-152 (493)
65 PF02554 CstA: Carbon starvati 97.8 0.00082 1.8E-08 64.2 15.5 163 9-183 33-197 (376)
66 PRK12488 acetate permease; Pro 97.7 0.11 2.3E-06 54.3 34.8 147 25-184 66-215 (549)
67 TIGR00796 livcs branched-chain 97.6 0.089 1.9E-06 51.7 27.1 73 35-119 2-77 (378)
68 PRK11017 codB cytosine permeas 97.6 0.071 1.5E-06 53.3 25.9 174 95-285 70-244 (404)
69 PRK00701 manganese transport p 97.2 0.31 6.7E-06 49.2 31.6 77 96-176 94-172 (439)
70 TIGR00835 agcS amino acid carr 97.2 0.21 4.7E-06 49.7 23.8 147 26-182 45-198 (425)
71 PRK15015 carbon starvation pro 97.1 0.007 1.5E-07 61.9 12.6 121 10-138 65-187 (701)
72 TIGR02121 Na_Pro_sym sodium/pr 97.0 0.58 1.3E-05 48.1 29.2 151 25-182 35-189 (487)
73 PRK09395 actP acetate permease 97.0 0.64 1.4E-05 48.5 35.5 145 25-181 68-214 (551)
74 TIGR02711 symport_actP cation/ 96.9 0.65 1.4E-05 48.4 33.6 145 25-182 66-213 (549)
75 COG1966 CstA Carbon starvation 96.8 0.021 4.5E-07 57.3 12.6 123 9-139 33-157 (575)
76 PF02133 Transp_cyt_pur: Perme 96.8 0.027 5.8E-07 57.1 13.9 111 24-142 5-117 (440)
77 COG1914 MntH Mn2+ and Fe2+ tra 96.6 0.84 1.8E-05 45.4 30.5 138 27-177 16-154 (416)
78 PRK10484 putative transporter; 96.3 1.7 3.6E-05 45.1 31.5 89 25-121 37-126 (523)
79 TIGR03648 Na_symport_lg probab 96.1 2.2 4.8E-05 44.6 35.8 144 25-180 31-176 (552)
80 PF01566 Nramp: Natural resist 96.0 1.7 3.8E-05 42.6 22.6 80 96-179 42-123 (358)
81 PRK15419 proline:sodium sympor 95.6 3.3 7.1E-05 42.8 28.2 150 25-183 39-194 (502)
82 PF05525 Branch_AA_trans: Bran 95.3 3.4 7.4E-05 41.3 23.3 74 28-113 3-79 (427)
83 COG4147 DhlC Predicted symport 94.6 5.6 0.00012 39.8 27.0 184 94-282 102-294 (529)
84 COG1953 FUI1 Cytosine/uracil/t 94.3 6.8 0.00015 39.6 29.5 193 94-296 101-318 (497)
85 TIGR00796 livcs branched-chain 93.9 1.2 2.6E-05 43.9 13.1 69 94-165 253-321 (378)
86 PRK15433 branched-chain amino 93.8 8.1 0.00018 38.8 22.5 44 28-71 8-54 (439)
87 KOG2083 Na+/K+ symporter [Inor 93.2 0.44 9.6E-06 48.5 8.7 209 47-275 51-274 (643)
88 KOG2082 K+/Cl- cotransporter K 92.7 13 0.00028 39.4 18.2 103 29-137 116-220 (1075)
89 PF05525 Branch_AA_trans: Bran 92.1 2.1 4.5E-05 42.8 11.7 119 38-165 206-327 (427)
90 KOG1288 Amino acid transporter 91.6 7.5 0.00016 40.7 15.0 54 223-279 296-349 (945)
91 PF01235 Na_Ala_symp: Sodium:a 91.1 18 0.00038 36.2 22.9 159 24-191 15-181 (416)
92 COG0814 SdaC Amino acid permea 86.8 2 4.3E-05 43.1 7.1 155 253-414 219-375 (415)
93 PRK15433 branched-chain amino 85.3 10 0.00022 38.1 11.1 106 51-166 226-331 (439)
94 COG1114 BrnQ Branched-chain am 84.3 18 0.00038 35.8 11.8 106 51-165 224-329 (431)
95 COG1115 AlsT Na+/alanine sympo 83.3 53 0.0011 32.9 25.9 149 23-180 58-213 (452)
96 PHA02764 hypothetical protein; 81.5 51 0.0011 31.5 13.9 90 24-121 10-102 (399)
97 TIGR01197 nramp NRAMP (natural 79.2 71 0.0015 31.8 25.4 129 34-176 10-142 (390)
98 COG1114 BrnQ Branched-chain am 72.6 1.1E+02 0.0023 30.6 22.7 75 28-114 5-82 (431)
99 PRK10745 trkD potassium transp 66.0 1.8E+02 0.0039 30.7 18.2 66 59-129 49-114 (622)
100 PLN00151 potassium transporter 64.4 2.2E+02 0.0048 31.1 20.5 52 29-80 98-161 (852)
101 PF02705 K_trans: K+ potassium 63.3 1.9E+02 0.0042 30.0 21.0 175 59-250 36-227 (534)
102 TIGR00794 kup potassium uptake 58.0 2.7E+02 0.0058 29.9 20.8 27 59-85 35-61 (688)
103 PRK12768 CysZ-like protein; Re 54.7 1.1E+02 0.0023 28.2 9.2 29 243-276 8-36 (240)
104 PLN00150 potassium ion transpo 51.1 3.6E+02 0.0078 29.4 21.1 59 25-83 38-108 (779)
105 PRK04949 putative sulfate tran 47.8 2.3E+02 0.005 26.2 12.0 64 242-312 16-79 (251)
106 PLN00148 potassium transporter 43.0 4.8E+02 0.01 28.5 19.4 98 176-282 221-322 (785)
107 KOG1289 Amino acid transporter 40.7 4.4E+02 0.0095 27.4 13.3 45 96-140 325-369 (550)
108 PF01235 Na_Ala_symp: Sodium:a 39.8 2.5E+02 0.0054 28.2 9.8 90 99-191 296-385 (416)
109 KOG2349 Na+:iodide/myo-inosito 38.3 5E+02 0.011 27.3 14.9 244 26-285 45-303 (585)
110 COG0733 Na+-dependent transpor 36.1 4.7E+02 0.01 26.4 24.4 232 27-273 8-263 (439)
111 KOG4812 Golgi-associated prote 35.8 84 0.0018 28.5 5.2 77 370-450 161-253 (262)
112 PRK13183 psbN photosystem II r 33.2 42 0.00091 21.8 2.1 31 257-287 4-34 (46)
113 COG4145 PanF Na+/panthothenate 32.8 5E+02 0.011 25.7 24.6 76 94-173 104-180 (473)
114 PF00209 SNF: Sodium:neurotran 32.5 5.8E+02 0.013 26.4 26.4 56 29-84 6-66 (523)
115 PF02447 GntP_permease: GntP f 31.0 5.8E+02 0.013 25.9 11.6 82 370-451 237-322 (441)
116 PHA02680 ORF090 IMV phosphoryl 31.0 1.4E+02 0.0031 22.4 4.8 57 225-285 15-71 (91)
117 PF11239 DUF3040: Protein of u 30.7 36 0.00077 25.3 1.8 8 1-8 1-8 (82)
118 PF02468 PsbN: Photosystem II 28.6 47 0.001 21.3 1.7 28 260-287 4-31 (43)
119 PRK09928 choline transport pro 26.8 6.2E+02 0.013 27.3 10.6 109 27-139 92-221 (679)
120 cd08766 Cyt_b561_ACYB-1_like P 26.4 2.7E+02 0.0058 23.3 6.5 68 255-326 37-104 (144)
121 KOG3659 Sodium-neurotransmitte 26.1 8E+02 0.017 25.9 17.0 88 29-124 83-175 (629)
122 CHL00020 psbN photosystem II p 25.8 46 0.001 21.3 1.4 27 260-286 4-30 (43)
123 cd08764 Cyt_b561_CG1275_like N 24.8 5.2E+02 0.011 23.3 9.5 69 255-325 54-122 (214)
124 PF07125 DUF1378: Protein of u 24.4 2E+02 0.0043 19.5 4.1 30 422-451 6-35 (59)
125 cd08765 Cyt_b561_CYBRD1 Verteb 22.6 3.4E+02 0.0073 23.0 6.4 68 255-326 44-111 (153)
126 cd08763 Cyt_b561_CYB561 Verteb 22.5 3.3E+02 0.0071 22.8 6.3 68 255-326 37-104 (143)
127 PLN02680 carbon-monoxide oxyge 22.2 3E+02 0.0064 25.1 6.3 67 255-325 76-142 (232)
128 COG3158 Kup K+ transporter [In 21.4 9.6E+02 0.021 25.2 18.3 56 59-116 55-110 (627)
129 PRK09928 choline transport pro 21.2 1E+03 0.022 25.7 10.9 54 146-200 450-503 (679)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-59 Score=446.30 Aligned_cols=388 Identities=21% Similarity=0.318 Sum_probs=339.7
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
++..|..++..|+.|+++|+|+|++|+||+++|++.|.+..+++++++.|+++.+++|.++...+.+. ...+|+|.++.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~-~~~~y~~~~~~ 122 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG-PSLDYAETAES 122 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ccccHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999998765444333 55788888875
Q ss_pred H----------hccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc--cccccccchhHHHHHHHHHHhhcCCCCCch
Q 012927 105 C----------LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE--AACEYSDTYYMLIFGAVQLILSQAPDFHNI 172 (453)
Q Consensus 105 ~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~--~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 172 (453)
+ +|+++|.++++.+.++++|.|++|++++++++++..+ .....+.+.|+.+..+++++++++||+|.|
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4 4788899999999999999999999999999999876 234677889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCC
Q 012927 173 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 252 (453)
Q Consensus 173 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 252 (453)
..+|.++.++.++ .+++..++..++.+. .++.....++.+++..+|+.+|||+++..+.|+.++||+|
T Consensus 203 sp~Sl~Anv~~~~----g~~ii~~y~~~~~~~------~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-- 270 (449)
T KOG1304|consen 203 SPFSLFANVFILV----GLAIIMYYLVQDLPP------TSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-- 270 (449)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHhccCC------ccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh--
Confidence 9999999987763 344445555555431 2222333446678899999999999999999999999999
Q ss_pred chhhHH---HHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927 253 ANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 329 (453)
Q Consensus 253 ~~~~~~---~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (453)
++++ +++..++.++.++|..+|++||+.|||++++.++.|+| + +++.+.+++++++.++++||+|++|..++
T Consensus 271 --~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI 345 (449)
T KOG1304|consen 271 --QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQFYVPIEI 345 (449)
T ss_pred --hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence 8999 99999999999999999999999999999999999998 5 99999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHH
Q 012927 330 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMY 409 (453)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~ 409 (453)
+|+.+.+|.++ .+.++..+.+|+.+++++..+|..+||++.+++++||++++.+.+++|++++
T Consensus 346 i~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~lie 408 (449)
T KOG1304|consen 346 IEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIE 408 (449)
T ss_pred HHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHH
Confidence 99988765432 2344788999999999999999999999999999999999999999999999
Q ss_pred HHhhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012927 410 FKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 447 (453)
Q Consensus 410 ~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~gt~~si~~i 447 (453)
++..+++ +++++++.+..++++|++.++.|||.|+.++
T Consensus 409 l~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 409 LITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9987543 4457788888999999999999999999864
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-58 Score=448.06 Aligned_cols=401 Identities=37% Similarity=0.642 Sum_probs=355.3
Q ss_pred CCccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
.+++|++|++++.+|.+|.++|.|+|+||||++++||+.|++++++.++++.||..+|.+|.+..+...|+ ++.+|+|+
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-r~~~Y~dl 110 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-RRYRYPDL 110 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cCCChHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999887777777 88999999
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc----ccccchhHHHHHHHHHHhhcCCCCCchhhHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC----EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 177 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~----~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (453)
++++||+++++++.+.+.+.+||+|+.|.+..+|++....+..| ....+.|+++++++.+|++++||++.+++.|.
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 99999999999999999999999999999999999998754332 23367899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhH
Q 012927 178 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 257 (453)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 257 (453)
.++++++.+..+++..+..+..+.+..... .++..+.. ..++++|++.|+|++|..+|+|+++||+| ++|
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~---~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f 260 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGG---YLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP----PKF 260 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccC---cccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCc----hhh
Confidence 999999999888887777665443222111 11111111 11799999999999999999999999999 779
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhh
Q 012927 258 KKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK 337 (453)
Q Consensus 258 ~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 337 (453)
+|++.+++.+++.+|+.+++.||++|||+++++++.|+. ++.|+...+++++.+|++.+|.++..|+.+.+|+....+
T Consensus 261 ~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~ 338 (437)
T KOG1303|consen 261 KKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVK 338 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccC
Confidence 999999999999999999999999999999999999996 589999999999999999999999999999999987654
Q ss_pred cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhhccch
Q 012927 338 FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEA 417 (453)
Q Consensus 338 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~~~~ 417 (453)
.++ + . ++....|...|+.+++.+.++|+.+|+++++.+++||+....+++++|+++|++.+|++|
T Consensus 339 ~~~--~------------~-~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~ 403 (437)
T KOG1303|consen 339 HPD--F------------K-KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKR 403 (437)
T ss_pred Ccc--c------------c-ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 221 0 0 133478999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 012927 418 WTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 450 (453)
Q Consensus 418 ~~~~~~~~~~~-~~~g~~~~~~gt~~si~~ii~~ 450 (453)
+..+|..++.+ .++|+++++.+.+++++.++.|
T Consensus 404 ~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 404 FSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999888 7999999999999999998864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.7e-56 Score=450.45 Aligned_cols=391 Identities=16% Similarity=0.160 Sum_probs=313.9
Q ss_pred cchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHh
Q 012927 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 106 (453)
+++..++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.++.++. +..+|+|++++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-------~~~sY~~la~~~~ 131 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-------NIRTYEGVARVLL 131 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCCHHHHHHHHh
Confidence 556789999999999999999999999999999999999999999999999999987652 4569999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc---cc----cccc-hhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA---CE----YSDT-YYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 107 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~---~~----~~~~-~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
||++++++++.+.+.++|+|++|+++.+|.+++..... .. ..++ .+.++..++++|+++.|++++++++|.+
T Consensus 132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 99999999999999999999999999999998654211 11 1122 3445566778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccc-ccc-cc---cccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCc
Q 012927 179 AAVMSFAYSFIGFGLGVAKVIGNGFVMG-SFS-GV---STTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 253 (453)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 253 (453)
++.+.++.++.++..... ++.+... +.+ +. ++....+...+.+.++|+++|||.||.+++|+++||||| +
T Consensus 212 ~~~~i~~~vi~ivi~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~--t 286 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCM---NGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR--S 286 (467)
T ss_pred HHHHHHHHHhhhhhhhhc---ccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc--c
Confidence 998766544333222222 2211100 000 00 011111112457899999999999999999999999997 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Q 012927 254 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKW 333 (453)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 333 (453)
++|+.++...++.+++++|..+|++||+.||++++++++.|+++ .+++...+++++..++++++||++.+|+|+.+++.
T Consensus 287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~ 365 (467)
T PTZ00206 287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDV 365 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 68999999999999999999999999999999999999999942 45677888999999999999999999999999887
Q ss_pred HHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhh
Q 012927 334 ICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 413 (453)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~ 413 (453)
+..+ . + +...++|...+..+++.+.++|+++||++.+++++||++++.++|++|+++|++..
T Consensus 366 ~~~~--~-----~-----------~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~ 427 (467)
T PTZ00206 366 IGWD--A-----R-----------KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSG 427 (467)
T ss_pred hCCC--c-----c-----------cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 5321 1 0 01124555566667777899999999999999999999999999999999999842
Q ss_pred ---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012927 414 ---NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 448 (453)
Q Consensus 414 ---~~~~~~~~~~~~~~~~~~g~~~~~~gt~~si~~ii 448 (453)
+++...++|...++++++|++..++|||.++++.+
T Consensus 428 ~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 428 GFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred CccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 22333345667888999999999999999999876
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=7.6e-54 Score=429.29 Aligned_cols=399 Identities=24% Similarity=0.370 Sum_probs=326.1
Q ss_pred ccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 105 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 105 (453)
||+|++++++|++|+++|+|+|++|++|+++|+++|++++++++.++.||.+++.|+.++.+ +++ +..+|+|++++.
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~-~~~~y~~l~~~~ 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGT-GRRSYGDLARRA 77 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--ccc-cccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999987532 122 678999999999
Q ss_pred hccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc---cccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA---CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 106 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~---~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
+||++++++++++.+.++|.+++|++..+|.+.+..+.. ...++..+.++..++++|+++.|+++.+++.|.++.++
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhc
Confidence 999999999999999999999999999999999876532 23566677888888999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCch-hhHHHHH
Q 012927 183 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN-QTMKKAS 261 (453)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~-~~~~~~~ 261 (453)
.+.++.+.+...... ....+.+ .+ .++.....+.++.+.++|+++|||.||.++||+++|||+| ++ +|++|+.
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~ 231 (409)
T PF01490_consen 158 IFYFIVIVVIYIISY-GPGEPSG--VP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVL 231 (409)
T ss_pred cceeeeeecceeeee-ecccccc--cc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccccccceee
Confidence 764311111111111 1111111 10 1111223456789999999999999999999999999998 33 4566999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhhcCCC
Q 012927 262 TMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPEN 341 (453)
Q Consensus 262 ~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~ 341 (453)
..++.+++++|..+|..||++||++++++++.|++ +++++..++++++.++++++||++.+|.++.+++.+.++.+..
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999999999999999999999999999998 5568899999999999999999999999999999875420000
Q ss_pred CCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhhccchhhHH
Q 012927 342 GFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRK 421 (453)
Q Consensus 342 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~~~~~~~~ 421 (453)
+...+ ...+.+++|+.+|+.+++.++++|..+||++.+++++|++++..+.|++|+++|+|.+++++++.+
T Consensus 310 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~ 380 (409)
T PF01490_consen 310 RDSPK---------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFG 380 (409)
T ss_pred ccccc---------cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccc
Confidence 00000 012344788999999999999999999999999999999999999999999999999876654433
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHHH
Q 012927 422 WV-----MLRVFSYVCFIVSTFGLVGSI 444 (453)
Q Consensus 422 ~~-----~~~~~~~~g~~~~~~gt~~si 444 (453)
|. ..+.++++|++.++.|+++++
T Consensus 381 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 WWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred eeehhhccceEEEEEeeehhHHhHHHHc
Confidence 32 245666788888888888875
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-48 Score=391.42 Aligned_cols=389 Identities=18% Similarity=0.197 Sum_probs=312.4
Q ss_pred ccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHccc---CCCCCCCC---CccccHH
Q 012927 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHR---GPDPEYGP---GRNRSYL 99 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~---~~~~~~g~---~~~~~y~ 99 (453)
+++|..++.+|++++.+|+|+|+||+||+++||++|++.+++.++++.||.+++.+++. ++.++++. +...+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999998642 12222221 0124789
Q ss_pred HHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 012927 100 EAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 100 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (453)
|+++..+||+++.+..+...+++++.|+.|++..++.+.+..+ ..+.+.|++++.++++|++++|++++++++|.+|
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~---~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig 200 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND---NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 200 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC---CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998887776532 4567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHH
Q 012927 180 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 259 (453)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 259 (453)
+.+++.....++..++.+ +.+ +++++ +...+....+.++++++|||++|..+||++++||+| +++++
T Consensus 201 ~~~tl~~av~i~i~~i~~---~~~-----~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~ 267 (473)
T PLN03074 201 LLMTTYTAWYMTIAALSH---GQV-----EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKY 267 (473)
T ss_pred HHHHHHHHHHHHHHHHhh---cCC-----CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccc
Confidence 987654333222222211 111 11111 112344567788889999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCccc--cccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhh
Q 012927 260 ASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEK 337 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 337 (453)
+...+....+.+|+.+++.||+.|||++++ +.+.|+| ++ ....++++++.++++.+||++..|+.+..|+.....
T Consensus 268 ~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~-~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~ 344 (473)
T PLN03074 268 IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RS-GWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH 344 (473)
T ss_pred hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cc-hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 999999999999999999999999999764 5576786 33 357899999999999999999999999988775321
Q ss_pred cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhhccc-
Q 012927 338 FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE- 416 (453)
Q Consensus 338 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~~~- 416 (453)
+ .+....|+.+|+.+++.++++|..+|+++.+++++||++++.+++++|+++|++.++++
T Consensus 345 --~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~ 405 (473)
T PLN03074 345 --D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSAS 405 (473)
T ss_pred --c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 0 13347789999999999999999999999999999999999999999999999855332
Q ss_pred ------------hhhHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 012927 417 ------------AWTRKW--VMLRVFSYVCFIV-STFGLVGSIQGIISAKL 452 (453)
Q Consensus 417 ------------~~~~~~--~~~~~~~~~g~~~-~~~gt~~si~~ii~~~~ 452 (453)
.++++| +.+..+++++.++ .+.|+|+|++++++++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 406 ARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred hhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 112222 5566666655555 58999999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=358.76 Aligned_cols=393 Identities=18% Similarity=0.298 Sum_probs=316.0
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
+++.|...+++|+.|+++|+|++++|++|++.|++.|+++++++++++.++.+++.++.++. +..+|++++++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-------~~~ty~~l~~~ 75 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-------GERTYSSLGDL 75 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-------CCCCHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999998763 22399999999
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccc---ccc----cccc-h-hHHHHHHHHHHhhcCCCCCchhhH
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEA---ACE----YSDT-Y-YMLIFGAVQLILSQAPDFHNIQSL 175 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~---~~~----~~~~-~-~~~i~~~i~~pl~~~~~l~~l~~~ 175 (453)
.+|+.++....+.......| |++|++.++|.++..... .++ +.++ . +++....+..|+++.|++.++++.
T Consensus 76 ~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 76 IFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred HcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 99999977777777777777 799999999999954321 112 1223 2 466777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 176 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
|.+++.+.+.++.++ +++........+. ..++..+...+++.+.++|+++|||.||.+..|+++||||| +++
T Consensus 155 S~~s~~~~~~fv~~v----v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~ 226 (411)
T KOG1305|consen 155 SALSLASVVYFVVLV----VYKYFQGPCALGR--LSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVK 226 (411)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhcccccCC--cccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHH
Confidence 999999887655433 3333332210111 11111222223688999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChh----HHHHHHHHHHHHHHhhhcccccchHHHHH
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW----LIDLANAFIVIHLVGGYQVYSQPIFAHFE 331 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~----l~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 331 (453)
+++++...+...+.++|...|.+||++|||++.+|++.+++...+.. ....+|..+.++++.++|+..+|+|..++
T Consensus 227 ~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~ 306 (411)
T KOG1305|consen 227 KIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLD 306 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 99999999999999999999999999999999999999998533222 35899999999999999999999999988
Q ss_pred HHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHH
Q 012927 332 KWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFK 411 (453)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~ 411 (453)
+...+..|.. + .....+++.+...++....+.|+.+||++.+++++||+++..+.|++|+++|++
T Consensus 307 ~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~ 371 (411)
T KOG1305|consen 307 ELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLK 371 (411)
T ss_pred HHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhhe
Confidence 7765433221 0 122244556666788889999999999999999999999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012927 412 QMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 450 (453)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~g~~~~~~gt~~si~~ii~~ 450 (453)
..++ +.++....+...++++.++++|+..-+.++..+
T Consensus 372 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 372 ASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred eecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8765 223334456666778889999999988888765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-43 Score=317.76 Aligned_cols=405 Identities=19% Similarity=0.191 Sum_probs=335.9
Q ss_pred CCccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCC--CccccHH
Q 012927 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGP--GRNRSYL 99 (453)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~--~~~~~y~ 99 (453)
++...+.+-+||..|..|++-|.=+++||+|...+|+. ++..++.++.+++||..+|++|....++ .|+ +.+.+|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 34456889999999999999999999999999999987 9999999999999999999999876443 342 2467999
Q ss_pred HHHHHHhccc-cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 100 EAVDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 100 ~~~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
++++.+++++ |++.+.+.+.+.+..+|+.|.+..+|.++.-.+.. ...++-|+++....++|.+++||++..+.+|.+
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ 267 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-SVDKASWMMITSASLLPCSFLKDLKIVSRLSFF 267 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-CccccchhhhhhHHHhhhHHHHHHHHHHHHHHH
Confidence 9999999887 55889999999999999999999999999866432 356778999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHH
Q 012927 179 AAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK 258 (453)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 258 (453)
..++-++.-++++.+++...-+ ..+ +..+-.-+..+++.++|+++|+|..|..+|.+...|++| .++.
T Consensus 268 ct~sH~viN~i~v~YCLs~~~d-----W~w---skv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn 335 (524)
T KOG4303|consen 268 CTISHLVINLIMVLYCLSFVSD-----WSW---SKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-----ccc---eeEEEEEEcccCceEEEEEEEeeeceeeccccccccCCh----hHhe
Confidence 8887776655555556543221 111 111111222345689999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhhc
Q 012927 259 KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF 338 (453)
Q Consensus 259 ~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~ 338 (453)
..+.++-+.+.++-..+|.+||++|+|.++..|++|+| +..+..++++++++.-++|||+-.+.+.+.+|+-++...
T Consensus 336 ~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 336 VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999997 556789999999999999999999999999998777655
Q ss_pred CCCCCCccccccCCCCCCCCCCcchhH--HHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhhccc
Q 012927 339 PENGFLNNEFFLKPPLMPAFRWNPLRL--CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIE 416 (453)
Q Consensus 339 ~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~~~ 416 (453)
|+.++-. +=+-+.+.+.| .+|..+++.+.++|+++|++..+++++|++.++.++|++|+++|++.+++.
T Consensus 413 p~t~Fps---------cys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~ 483 (524)
T KOG4303|consen 413 PQTPFPS---------CYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT 483 (524)
T ss_pred CCCCCce---------eeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence 5543321 10111223444 468889999999999999999999999999999999999999999987766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012927 417 AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 453 (453)
Q Consensus 417 ~~~~~~~~~~~~~~~g~~~~~~gt~~si~~ii~~~~~ 453 (453)
....+......+++.|..+++.|.|.|...+++.+++
T Consensus 484 L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 484 LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 5555666777888899999999999999999998764
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=271.43 Aligned_cols=391 Identities=16% Similarity=0.199 Sum_probs=288.2
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.+.+.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+.++.+ + ++.++.++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~-~----~~~~~~~~~~ 79 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSP-N----GKASITSLVE 79 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----CcccHHHHHH
Confidence 3557788899999999999999999999999999999999999999999999999999987631 1 2259999999
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc--cc-cccchhHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA--CE-YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~--~~-~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
+.+||+++++.++.+.+.+++.+.+|.+..+|.+++..+.. .+ ..++.+.+++.+++.++++.++...++..+.+..
T Consensus 80 ~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 80 DYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765421 12 4566777888888888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHH
Q 012927 181 VMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 260 (453)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (453)
..+.++++ .+.+.....++ ......|..+ ...+.....++|+++|||+||+++|++.+|||++ ++++.+|+
T Consensus 160 ~~v~~~~~----l~~~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~ 230 (415)
T COG0814 160 GKVIYLVL----LVVYLIPHWNP--ANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKA 230 (415)
T ss_pred HHHHHHHH----HHHHHhcccCH--HHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHH
Confidence 87664333 33333222111 0111111111 2445567899999999999999999999999987 44459999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCcccccccccccc-----------CChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927 261 STMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFY-----------EPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 329 (453)
Q Consensus 261 ~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~-----------~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (453)
...+..+..++|..+++++|..+|+.+.++++++.++. ..+......+++..+.+..+|-......++.
T Consensus 231 ~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~ 310 (415)
T COG0814 231 ILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEG 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHh
Confidence 99999999999999999999999999999999999741 1122344555555666666655555556666
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHH--HHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHH
Q 012927 330 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFR--TVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVE 407 (453)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l 407 (453)
.++.... + +++ + +++..+.+.... ...++....++...|..+.+.+.+|+.....+.++.|..
T Consensus 311 ~~~~~~~---~----~~~-~-------~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 311 LADLFKK---S----NSK-P-------GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred hhHHHHh---c----cCc-c-------cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432 0 000 0 011112332222 334455777888888899999999999988888888887
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012927 408 MYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGS 443 (453)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gt~~s 443 (453)
.+.|....+++..++....++.++|+..+....+..
T Consensus 376 ~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 376 LIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred hcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 776654434333322345566666766666555543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.94 E-value=8.9e-25 Score=212.75 Aligned_cols=354 Identities=13% Similarity=0.062 Sum_probs=254.1
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
.++++++.+++.+.+..+++|+|+|++|.+.++.|++++++++++++....||..++.|+..+.+ +..++..++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~------~g~~~~tma 79 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR------IGSSFDTIT 79 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999865531 446999999
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccc-ccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEA-ACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~-~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
|+.+||+|+++..++..+..|+.+.+|+...|+.+.+..+. ..+.+.+.-.+++.++....... ..+...+++-.-..
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877542 11223334444555555444443 23555555533332
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHH
Q 012927 182 MSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 261 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (453)
..+.. ++..+.....+-.. ....+.+ ......+...+.++|++++||+.|+++|++++.+++. .||.+|++
T Consensus 159 ~~i~~----f~~~~~~l~~~i~~-~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I 229 (414)
T PRK10483 159 AKVIT----FFLTFGSLLGHVQP-ATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCL 229 (414)
T ss_pred HHHHH----HHHHHHHHHhhcCH-HHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHH
Confidence 22211 11111111111110 0011101 0111223347799999999999999999999999863 57999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhh-----------cCCCccccccccccc-cCChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927 262 TMSIITTTIFYLFCGGFGYAA-----------FGDNTPGNLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 329 (453)
Q Consensus 262 ~~a~~~~~~~y~~~g~~gy~~-----------fg~~~~~~il~~~~~-~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (453)
..+..+..++|++.=...... -+++. +..+..+.. .++.++..+..++..+++.+||--....+++.
T Consensus 230 ~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~ 308 (414)
T PRK10483 230 VYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDY 308 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999743333322 22222 111122221 13446678889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhHHH
Q 012927 330 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEM 408 (453)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~ 408 (453)
+.+.++.+ +....|.....+..+++.++|++.|+ +-..+++.|.. ...+.-++|+++
T Consensus 309 l~D~~k~~---------------------~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM 366 (414)
T PRK10483 309 LADLFGFD---------------------DSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALL 366 (414)
T ss_pred HHHHhCCC---------------------CccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 98876432 11134444555678889999999998 88999999976 567888999999
Q ss_pred HHHhhcc
Q 012927 409 YFKQMNI 415 (453)
Q Consensus 409 ~~~~~~~ 415 (453)
.+|.||+
T Consensus 367 ~~~~Rk~ 373 (414)
T PRK10483 367 ARASRKR 373 (414)
T ss_pred HHHHHhc
Confidence 9998865
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=1.3e-24 Score=213.69 Aligned_cols=350 Identities=17% Similarity=0.173 Sum_probs=251.5
Q ss_pred ccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 105 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 105 (453)
++.+.+++.+.+..+.+|+|+|+||.+.+..|+.++++++++.+..+++|..++.|...+.+ +..++.+++++.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~------~~~~~~~~a~~~ 74 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP------EGSSLTSMAEKY 74 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999765432 346999999999
Q ss_pred hccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc--ccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 012927 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC--EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMS 183 (453)
Q Consensus 106 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (453)
+||+++++..+...+..++.+.+|....++.+.+..+... ..+++.-..++.++...+.... .+...+.+-.-+...
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG-TKAVDRINRVLVFGM 153 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764332 2333333333443333333222 233334433332222
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccccc-cchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHH
Q 012927 184 FAYSFIGFGLGVAKVIGNGFVMGSFSGVST-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST 262 (453)
Q Consensus 184 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (453)
+. .......+ ...+- + .+...+ .....++...+.++|+.++||+.|+++|++.+.+++. +||.+|++.
T Consensus 154 i~---~~~~l~~~-~~p~~--~--~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~ 222 (394)
T PF03222_consen 154 II---SFIILVVY-LIPHW--N--PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAII 222 (394)
T ss_pred HH---HHHHHHHH-Hhhhc--C--HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHH
Confidence 21 11112211 11111 1 111111 1112344567899999999999999999999999963 689999999
Q ss_pred HHHHHHHHHHHHHHhHHhh-----------hcCCCcc--ccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927 263 MSIITTTIFYLFCGGFGYA-----------AFGDNTP--GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 329 (453)
Q Consensus 263 ~a~~~~~~~y~~~g~~gy~-----------~fg~~~~--~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (453)
.+..+..++|++.-...-. .-+++.. ...+.+.. ++.+....+.++..+++.+||--....+++.
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~ 300 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDF 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865332222 1111111 12233332 4567788899999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhHHH
Q 012927 330 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEM 408 (453)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~ 408 (453)
+++.++.+ +....|.....+..+++.++|...|+ +...+++.| .....+..++|+++
T Consensus 301 l~d~~k~~---------------------~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m 358 (394)
T PF03222_consen 301 LADLFKLK---------------------NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALM 358 (394)
T ss_pred HHHHHcCC---------------------ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHH
Confidence 88776321 11134555556667779999999998 889999999 88899999999999
Q ss_pred HHHhhccch
Q 012927 409 YFKQMNIEA 417 (453)
Q Consensus 409 ~~~~~~~~~ 417 (453)
.+|.|++++
T Consensus 359 ~~~~r~~~~ 367 (394)
T PF03222_consen 359 VWKARKRKP 367 (394)
T ss_pred HHHHHcccC
Confidence 999876543
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=1.7e-24 Score=210.47 Aligned_cols=354 Identities=13% Similarity=0.087 Sum_probs=248.9
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
++|.+.+.+...+..+++|+|+|+||.+.++.|+.++++++++++....||..++.|+..+.+ +..++..++|+
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~------~g~~l~tma~~ 79 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP------VGSSFNTITKD 79 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHH
Confidence 456688899999999999999999999999999999999999999999999999999876532 44699999999
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc--ccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC--EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
.+||+|+++..++..+..|+.+.+|+...|+.+++..+... +.+.+...+++.++........ .+...+.+-.-...
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~ 158 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGL 158 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764211 2233333344444444444333 24444444322221
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccccc-hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHH
Q 012927 183 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 261 (453)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (453)
.+ +.+...+.....+-.. ....+.+..+ +.......+.++|++++||+.|+++|++.+.+++ +.|+.+|++
T Consensus 159 ~i----i~f~~~~~~l~~~i~~-~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~---d~~~~~kaI 230 (415)
T PRK09664 159 KI----ISFVIVFGSFFFQVDY-SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGK---RKDKLIKSV 230 (415)
T ss_pred HH----HHHHHHHHHHhhcccH-HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCc---cHHHHHHHH
Confidence 11 1111111111111000 0011001000 0011234678999999999999999999999986 357899999
Q ss_pred HHHHHHHHHHHHHH--HhHHh---------hhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHH
Q 012927 262 TMSIITTTIFYLFC--GGFGY---------AAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHF 330 (453)
Q Consensus 262 ~~a~~~~~~~y~~~--g~~gy---------~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (453)
..+..+..++|.+. ...|- ...|+++...+..-....+..++....+++..+++.+||--....+++.+
T Consensus 231 l~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l 310 (415)
T PRK09664 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYL 310 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999743 22231 12333332211111111135577888999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhHHHH
Q 012927 331 EKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMY 409 (453)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~~ 409 (453)
.+.++.+ +....|.....+..+++.++|++.|+ +-..++..|.. ..++.-++|+++-
T Consensus 311 ~D~~~~~---------------------~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~ 368 (415)
T PRK09664 311 ADLFKID---------------------NSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLA 368 (415)
T ss_pred HHHhCCC---------------------CccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8876432 11134455555678889999999998 89999999986 5688889999999
Q ss_pred HHhhcc
Q 012927 410 FKQMNI 415 (453)
Q Consensus 410 ~~~~~~ 415 (453)
+|.||+
T Consensus 369 ~~~Rk~ 374 (415)
T PRK09664 369 IKARKK 374 (415)
T ss_pred HHHhcc
Confidence 998865
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=1e-23 Score=206.36 Aligned_cols=368 Identities=13% Similarity=0.130 Sum_probs=254.7
Q ss_pred chHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhc
Q 012927 28 GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 107 (453)
++.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++.+..|+.+++.|+..+. . +..++.+++|+.+|
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~--~----~~~~~~~~a~~~LG 76 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV--P----ADTGLGTLAKRYLG 76 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C----CCCCHHHHHHHHhC
Confidence 47789999999999999999999999999999999999999999999999999965432 1 34699999999999
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccc--ccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHH
Q 012927 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEA--ACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFA 185 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~--~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 185 (453)
|+++++..++..+..|..+.+|....|+.+.+..+. ..+.+.....+++.++....... ..+...+++-.-+...+.
T Consensus 77 ~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 77 RYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKII 155 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988888765431 11223334444444443333322 224444444332222111
Q ss_pred HHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHH
Q 012927 186 YSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 265 (453)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~ 265 (453)
. .+....+ ...+- + .++..+.+ . +....+.++|++++||+.|+++|++.+.+++ +.||.+|++..+.
T Consensus 156 ~---~~~~~~~-l~p~~--~--~~~L~~~~-~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~---~~~~~~k~i~~Gs 222 (403)
T PRK15132 156 F---LVVMLAL-MMPHI--H--KVNLLTLP-L-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGG---NIRKLRWVFIIGS 222 (403)
T ss_pred H---HHHHHHH-HHHhc--C--HHHHhcCC-c-cccHHHHHHHHHHHHhhCCcccHHHHHHhCc---CHHHHHHHHHHHH
Confidence 1 1111111 11110 0 01111000 0 0013778999999999999999999999986 3689999999999
Q ss_pred HHHHHHHHHHHhHHhhhcCCCc-----c-----ccccccccc-cCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHH
Q 012927 266 ITTTIFYLFCGGFGYAAFGDNT-----P-----GNLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 334 (453)
Q Consensus 266 ~~~~~~y~~~g~~gy~~fg~~~-----~-----~~il~~~~~-~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 334 (453)
.+..++|++.-......-+.+. + ++++..+.. .+..+...++..+..+++.+||--....+++.+.+.+
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976555444433221 1 122333321 1345778889999999999999999999999998876
Q ss_pred HhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhHHHHHHhh
Q 012927 335 CEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFKQM 413 (453)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~ 413 (453)
..+ ++...|.....+..++++++|+..|| +..+.++.|.. ...+.+++|+++.+|.|
T Consensus 303 ~~~---------------------~~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r 360 (403)
T PRK15132 303 QRR---------------------NTVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSR 360 (403)
T ss_pred ccC---------------------ccccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 431 01133555666788889999999998 88999998864 68999999999999987
Q ss_pred ccc---hhh--HHHHHHHHHHHHHHHHHH
Q 012927 414 NIE---AWT--RKWVMLRVFSYVCFIVST 437 (453)
Q Consensus 414 ~~~---~~~--~~~~~~~~~~~~g~~~~~ 437 (453)
+++ +++ ..+....+..++|++..+
T Consensus 361 ~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 361 KQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred hcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 644 222 123334444455554443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=4e-23 Score=204.80 Aligned_cols=343 Identities=13% Similarity=0.071 Sum_probs=244.2
Q ss_pred HHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchh
Q 012927 34 VAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWA 113 (453)
Q Consensus 34 ~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~ 113 (453)
....+++++|+|++++|..+++.|...+.+.+++.++.+.++...+.|...+. | +..++.+.+++.+||+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p-----~~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-P-----GGASFNTIAKDLLGKTGNII 76 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-----CCCCHHHHHHHHhCHHHHHH
Confidence 34567999999999999999999999999999999999999999999987542 2 23589999999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhhhhccccc--ccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHH
Q 012927 114 CSFFVHVGLYGTAIAYTVTSAISMREGHEA--ACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGF 191 (453)
Q Consensus 114 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~--~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 191 (453)
..+...+.++..+.+|.+..++.+.+..+. ....+.+...+++.+++.++ ..+..+...+++.+.+...+...+..+
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875431 11122223333333333343 345567777777776665543322222
Q ss_pred HHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHH
Q 012927 192 GLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIF 271 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~ 271 (453)
.....+. +. .+..... .+...+.+...+++...++|++|.+++++.++++++ +||.+|++..+..+.+++
T Consensus 156 i~~~~~~---~~--~~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~l 225 (381)
T TIGR00837 156 SGLLPHV---KG--DLLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVL 225 (381)
T ss_pred HHHHhhc---cH--HHHhcCc--cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHH
Confidence 1222111 00 0110000 001234467789999999999999999999999864 589999999999999999
Q ss_pred HHHHHhHHhhhcCCCccc----------cccccccc-cCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhhcCC
Q 012927 272 YLFCGGFGYAAFGDNTPG----------NLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPE 340 (453)
Q Consensus 272 y~~~g~~gy~~fg~~~~~----------~il~~~~~-~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~ 340 (453)
|+.+........+.+.-. .....+.. .+..+...++..+..+++.+++.....+.++.+.+.+.++.
T Consensus 226 Y~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-- 303 (381)
T TIGR00837 226 YILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-- 303 (381)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--
Confidence 998877666555433211 11111110 02345678888999999999999988888888766653310
Q ss_pred CCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChH-HHHHHhhhhhcchhhhhhhHHHHHHhhcc
Q 012927 341 NGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFKQMNI 415 (453)
Q Consensus 341 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~-~v~~l~Ga~~~~~l~~ilP~l~~~~~~~~ 415 (453)
+ +.+|+.......+++.++|.+.|+.. ..++..| ++...+.+++|+++++|.||+
T Consensus 304 ------------------~-~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 304 ------------------S-KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred ------------------c-cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 0 12345556666788999999999865 8999999 778899999999999997764
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=7.4e-21 Score=185.18 Aligned_cols=378 Identities=11% Similarity=0.062 Sum_probs=250.8
Q ss_pred HHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccc
Q 012927 32 TAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 111 (453)
Q Consensus 32 ~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~ 111 (453)
.....+.++.+|+|+|+||-.....|+.++++++++.+.+++++.+.+.|...+.++ +..++.+++++.+||+++
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-----~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-----PSGNITETVEEHFGKTGG 97 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCHHHHHHHHcChhHH
Confidence 445899999999999999999999999999999999999999999999997654211 346999999999999999
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc---cccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHH
Q 012927 112 WACSFFVHVGLYGTAIAYTVTSAISMREGHEAA---CEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSF 188 (453)
Q Consensus 112 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~---~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 188 (453)
.+..++..+..|..+.+|...+.+.+.++.... ...++....+++.+++....... -+...+++-.-+.- .+.
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~---~i~ 173 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWP---FIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH---HHH
Confidence 999999999999999999999988887642111 02233333444444444443332 13333433322221 112
Q ss_pred HHHHHHHHHHHhCCcccccccccc-----ccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCC-----Cc--hhh
Q 012927 189 IGFGLGVAKVIGNGFVMGSFSGVS-----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP-----PA--NQT 256 (453)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-----~~--~~~ 256 (453)
+.+..+++-..+=+. ......+ +..+.......+.++|++++||+.|+++|++...+|+.. ++ .||
T Consensus 174 ~l~~l~~~LiP~w~~--~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 174 SLVLISLSLIPYWNS--AVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHcCH--HHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 222222222211000 0011011 000111123477899999999999999999999953320 13 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhcCCCc-----cccc------ccccccc-CC-----hhHHHHHHHHHHHHHHhhh
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGNL------LTGFGFY-EP-----YWLIDLANAFIVIHLVGGY 319 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~~i------l~~~~~~-~~-----~~l~~~~~~~~~i~~~~s~ 319 (453)
.+|++..+..+..++|++.-+.+-..-+.+. +.|+ .+.++.. +. .++.....++..+++.+||
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666666554322 1121 1222210 11 4567888888899999999
Q ss_pred cccccchHHHHHHHHHh-h-cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhc
Q 012927 320 QVYSQPIFAHFEKWICE-K-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIF 397 (453)
Q Consensus 320 pl~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~ 397 (453)
-.....++|.++..+.+ . .++++. ...+..+.......++.++.+|..-|++-.+++-+|+--.
T Consensus 332 lGv~LGl~E~l~gl~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPii 397 (443)
T PRK13629 332 FGHYLGTLEGLNGLILKFGYKGDKTK--------------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPII 397 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc--------------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHH
Confidence 99999999999988742 1 111110 0112345555667778899999999999999998888777
Q ss_pred chhhhhhhHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 012927 398 WPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 435 (453)
Q Consensus 398 ~~l~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 435 (453)
..+.|++|...-.|...-++++.++ .+.++.+.|++.
T Consensus 398 a~il~l~P~y~i~kvp~l~~yr~~~-~n~fv~~~Gl~~ 434 (443)
T PRK13629 398 ASLLCLLPMYAIRKAPSLAKYRGRL-DNVFVTVIGLLT 434 (443)
T ss_pred HHHHHHHHHHHHHccHHHHHhCCCc-hhHHHHHHHHHH
Confidence 8999999998877764434433222 345544444443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=2.5e-19 Score=176.09 Aligned_cols=364 Identities=11% Similarity=0.043 Sum_probs=243.7
Q ss_pred HHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccc
Q 012927 30 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKT 109 (453)
Q Consensus 30 ~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~ 109 (453)
...-.+.+.++++|+|+|++|....+.||+..++..++...+++++..++.|..... +. +..++.|++++.+||+
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~-~~----p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS-KN----PCEDITEVVEEHFGKN 79 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CCCCHHHHHHHHcCHH
Confidence 345688999999999999999999999999999999999999999999999974331 11 2469999999999999
Q ss_pred cchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccccc--ccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHH
Q 012927 110 NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEY--SDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYS 187 (453)
Q Consensus 110 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~--~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 187 (453)
++.+..+...+..+..+.+|....++.+.+........ ..+....+..++..........+.+.+++-+-+...+.
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii-- 157 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVL-- 157 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999998888877654221111 12222222222222223333445555555444432222
Q ss_pred HHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHH----hhhCCCCCchhhHHHHHHH
Q 012927 188 FIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ----DTLKSPPPANQTMKKASTM 263 (453)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p~~~~~~~~~~~~~ 263 (453)
..+...++...+-+ ..+....|.. ...+.+...+++..++||.+|+++++.. ++.+||...+||.+|+...
T Consensus 158 -~l~~l~~~lip~~~--~~~L~~~p~~--~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~ 232 (397)
T TIGR00814 158 -ILVLLSLYLIPHWN--GANLTTFPSF--NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG 232 (397)
T ss_pred -HHHHHHHHHHHHcC--HHHHhcCCcc--cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 11112222111100 0011111111 1234568899999999999999999998 3344332236889999999
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCc-----ccc--cccccc-ccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHH
Q 012927 264 SIITTTIFYLFCGGFGYAAFGDNT-----PGN--LLTGFG-FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 335 (453)
Q Consensus 264 a~~~~~~~y~~~g~~gy~~fg~~~-----~~~--il~~~~-~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (453)
+..+.+++|+..-+.+....+.+. ++| .+..+. ..+..+...+...+..+++.+||-.+...+++.++..+.
T Consensus 233 ~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 233 ASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999987776666665432 112 122111 013446778888888999999999999999999998773
Q ss_pred hh-cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHHhhc
Q 012927 336 EK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN 414 (453)
Q Consensus 336 ~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~ 414 (453)
+. .++++. ..++..+.......++.++.+|..-|++-.+++-+|+--...+.|++|...-.|...
T Consensus 313 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~ 378 (397)
T TIGR00814 313 NSLKMKGKK--------------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPA 378 (397)
T ss_pred HHhcccccc--------------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHH
Confidence 21 111110 011133445555677779999999999999999777777788999999988777644
Q ss_pred cchhh
Q 012927 415 IEAWT 419 (453)
Q Consensus 415 ~~~~~ 419 (453)
-++++
T Consensus 379 l~~~~ 383 (397)
T TIGR00814 379 LKKYR 383 (397)
T ss_pred HHHhC
Confidence 34443
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.64 E-value=8.1e-13 Score=133.55 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=147.8
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
++|+-+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.........|...+ .|+.| ......+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~G-----G~y~y~~ 76 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSG-----GMGGYAE 76 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCC-----chHHHHH
Confidence 46788999999999999999999999999888886 46777777777777777777775543 44444 3344557
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHH-HHHhhcCCCCCchhhHHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAV-QLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
+.+||+.+++......+........+.....+.+....+... .....+++...++ +.-....+..|....++.+.+..
T Consensus 77 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~-~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 77 YAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL-SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999888888876665554444443333444443332110 1111222222221 12223334444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHH
Q 012927 183 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST 262 (453)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (453)
.+...++++...... .+..... +.+. ........++..++....|+|.|-.....+.+|+||| +|+.+|++.
T Consensus 156 ~l~~l~~~~i~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~ 227 (438)
T PRK10655 156 VIIPVVGLSIIGWFW-FSPSLYV---AAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHH-hCccccc---CCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHH
Confidence 322222222222211 1111111 1111 1111223456678888999999999999999999999 579999999
Q ss_pred HHHHHHHHHHHHHHhHHh
Q 012927 263 MSIITTTIFYLFCGGFGY 280 (453)
Q Consensus 263 ~a~~~~~~~y~~~g~~gy 280 (453)
.+..+..++|+.......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998765443
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.60 E-value=3.5e-12 Score=129.14 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=142.4
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
+++|+.+.++.+...+++++|+|++.+|....+.|- ..+...++.++........+.|.... .|..| ..+.| +
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aG--G~y~~---~ 77 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPG--GSYAY---A 77 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC--ChhHH---H
Confidence 456788999999999999999999999999887763 34455555556666666666675544 34444 33444 7
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccch--hHHHHH-HHHHHhhcCCCCCchhhHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTY--YMLIFG-AVQLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--~~~i~~-~i~~pl~~~~~l~~l~~~s~~~ 179 (453)
++.+||..++++.....+.......+......+......+.. ..+. .++... +...-.......|....+..+.
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~ 154 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 889999988877776665443333333333333333332211 1111 111111 1122222333445555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHH
Q 012927 180 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 259 (453)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 259 (453)
....+...+......+. ..++....+ .++ ..+......+..++....|+|.|-.......+|+||| +|+.+|
T Consensus 155 ~~~~~i~l~~~~~~~~~-~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPr 226 (445)
T PRK10644 155 TVLALIPIVGIAVFGWF-WFRGETYMA---AWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPI 226 (445)
T ss_pred HHHHHHHHHHHHHHHHH-HhCchhccC---Ccc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhH
Confidence 43332211111111111 111111111 111 1111223456678889999999999999999999999 578999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhh
Q 012927 260 ASTMSIITTTIFYLFCGGFGYA 281 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~~gy~ 281 (453)
++..+..+..++|.........
T Consensus 227 ai~~s~~i~~v~Y~l~~~~~~~ 248 (445)
T PRK10644 227 ATIGGVLIAAVCYVLSSTAIMG 248 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765433
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=99.59 E-value=5.9e-12 Score=128.85 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=144.9
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
-+|+.+.++..+..+++++|+|++..|. +.+++|- .+++..++.+++....+..+.|.... .|..| .....+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~aG-----g~y~y~ 98 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPSSG-----SFVSYA 98 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CHHHHH
Confidence 4567789999999999999999999877 5777886 46777888888888888888886654 34444 556677
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
++.+|++.++++.....+........-....+..+...... . ..+.|..... .++.-.......|....+.....+
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAF-G--GVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999998888888776654433333333333333221110 0 1223332222 222222333334444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccc---cccccccch--hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 182 MSFAYSFIGFGLGVAKVIGNGFVMGS---FSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
.-+...+..++..+.....+.+.+.. .....+... ...+...+.++....|+|.+-..+....+|+||| +|+
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~ 252 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDP---QTM 252 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhH
Confidence 22211111111222111111111100 110111000 1223445567778999999999999999999999 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
.+|++..+.....++|+.........
T Consensus 253 iPrAi~~~~~~i~~~yi~~~~~~~~~ 278 (499)
T PRK15049 253 VPKAINSVIWRIGLFYVGSVVLLVML 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999888888765544433
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.58 E-value=5.2e-12 Score=127.40 Aligned_cols=244 Identities=11% Similarity=0.064 Sum_probs=143.9
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
+++|+-+.++.+...+++|+|+|++.+|...++.|-. .+...++.++..........|...+ .|+.| ..++|.
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~G--G~y~y~--- 74 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQG--GPIAYA--- 74 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC--ChhHHH---
Confidence 3577889999999999999999999999999988853 5566666666666666667775544 44444 334444
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
++ +|++.++++..............+.....+.+....+.. ......+++... +...-....+..|....++.+..+
T Consensus 75 ~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~ 152 (435)
T PRK10435 75 GE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-NDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred HH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56 688888877766554443333344344444444333211 111111111111 111222333344444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHH
Q 012927 182 MSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 261 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (453)
..+...+..+.....+ . + +... .+++.+. ......++..++....|+|.|-..+....+|+||| +|+.+|++
T Consensus 153 ~~li~~~~~~i~g~~~-~-~-~~~~-~~~~~~~-~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi 224 (435)
T PRK10435 153 LVLIPVVGTAIVGWHW-F-D-AATY-AANWNTS-DTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHH-c-C-HHhh-cccccCC-CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHH
Confidence 3222111111111111 1 1 1000 0111111 11235678889999999999999999999999998 57899999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhc
Q 012927 262 TMSIITTTIFYLFCGGFGYAAF 283 (453)
Q Consensus 262 ~~a~~~~~~~y~~~g~~gy~~f 283 (453)
..+..++.++|...........
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998776554433
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=99.57 E-value=1.4e-11 Score=124.98 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=152.0
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+-+|+.+.++..+..+++++|+|++..|-. .+++|- ..++..++.+++....+.-+.|...+ .|..| ...+.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~G-----g~~~y 90 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSG-----SFAHF 90 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CHHHH
Confidence 446778889999999999999999998766 556675 47777888888888888888886654 34444 55667
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
+++.+|+..++++.....+.......+.....+..+....+. . ..+..... .++.-....+..|..+.+.....
T Consensus 91 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 91 AYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD---V--PTWIWAAAFFIIINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---C--cHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 889999999998888877766555555555555555543321 1 12222221 22223334445555554443332
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCc-ccccccc-ccccc-hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhH
Q 012927 181 VMSFAYSFIGFGLGVAKVIGNGF-VMGSFSG-VSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 257 (453)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 257 (453)
+.-+...+..++..+.....+.+ ...+.++ +++.. ....+.++..++....|+|.+-..+....+|+||| +|+.
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~i 242 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP---EKSI 242 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHH
Confidence 22221111212222222122111 1111111 11100 01234457789999999999999999999999998 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh
Q 012927 258 KKASTMSIITTTIFYLFCGGFGY 280 (453)
Q Consensus 258 ~~~~~~a~~~~~~~y~~~g~~gy 280 (453)
+|++..+.....++|........
T Consensus 243 Prai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 243 PKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987544433
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.55 E-value=1.6e-11 Score=124.66 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=157.2
Q ss_pred CCccccchHHHHHHHHHhhhhchhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLA-WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
.+.+|+-+.++..+..+++++|+|++.+| .+.+++|- .+++..++.+++.......+.|...+ .|..| ...+
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~~G-----g~~~ 80 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPDTG-----SFST 80 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC-----CHHH
Confidence 34578889999999999999999999999 66778886 46777888888888878888886654 33334 4567
Q ss_pred HHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHH-HHHhhcCCCCCchhhHHHHH
Q 012927 101 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAV-QLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~~~s~~~ 179 (453)
.+++.+||+.++++.....+.....+.......+..++...+. .+.|.....++ +.-.......|....+....
T Consensus 81 ~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 81 YADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 7889999999999888888777777777767777766654431 12333222222 22223334445555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcc-c-cccccccccch--hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 180 AVMSFAYSFIGFGLGVAKVIGNGFV-M-GSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
.+..+...+..++..+.....+.+. + ....++.+... .+.+.++..++....|+|.+...+..+.+|+||| +|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r 232 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP---IK 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh---hh
Confidence 3332222111121222111111111 1 00111111011 1223468889999999999999999999999999 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhh
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGYA 281 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy~ 281 (453)
+.+|++..+.....++|+........
T Consensus 233 ~iPrAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 233 SITRATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 89999988888888888876554433
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.55 E-value=1.8e-11 Score=124.65 Aligned_cols=249 Identities=12% Similarity=0.067 Sum_probs=146.2
Q ss_pred ccchHHHHHHHHHhhhhchhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
|+-+.++.....+++++|+|++.+|.... .+|....++..++.++..........|...+ .|+.|. ...+.+++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gG----G~y~y~~~ 75 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDG----GVYSYAKA 75 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC----ChhhhHHh
Confidence 46678899999999999999999998854 5664444555677777777777777776554 333211 23344789
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccccccc-chhHHHH-HHHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSD-TYYMLIF-GAVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~i~-~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
.+||..+++......+........+.....+.+....+......+ ..+.+.. .+..+-....+..|....++....+.
T Consensus 76 ~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 76 GFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999888888776665544555555544444433221111111 1122111 11122223345555555555544433
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccc-ccccc-ccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHH
Q 012927 183 SFAYSFIGFGLGVAKVIGNGFVMGS-FSGVS-TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 260 (453)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (453)
.+...+..++..+.. .+.+....+ +.+.+ .........++..++....|+|.+......+.+|.||+ |+.+|+
T Consensus 156 ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~a 230 (468)
T TIGR03810 156 KLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKA 230 (468)
T ss_pred HHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHH
Confidence 332222222222211 111111100 01100 00111123445678889999999999999999999975 899999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcC
Q 012927 261 STMSIITTTIFYLFCGGFGYAAFG 284 (453)
Q Consensus 261 ~~~a~~~~~~~y~~~g~~gy~~fg 284 (453)
+..+.....++|..+....+...+
T Consensus 231 i~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 231 TVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999988776654443
No 23
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.53 E-value=2.4e-11 Score=123.28 Aligned_cols=242 Identities=14% Similarity=0.062 Sum_probs=150.7
Q ss_pred CCCCccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccH
Q 012927 20 PEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSY 98 (453)
Q Consensus 20 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y 98 (453)
.+++.+|+-+.++..+..+++++|+|++..|-. .+++|- ..++..++.++........+.|.... .|..| .+
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~aG-----g~ 78 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPVAG-----SF 78 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC-----CH
Confidence 334567888999999999999999999998877 556675 56667777777777777777776544 34334 55
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 99 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 99 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
.+.+++.+||..++++.....+.....+.+.....++.++...+. .....+..++.. +.-.......|....++..
T Consensus 79 y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~i~~~-~~~~lN~~gv~~~~~~~~~ 154 (456)
T PRK10238 79 SHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---IPTWVSAAVFFV-VINAINLTNVKVFGEMEFW 154 (456)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Confidence 556778899999999999988888877777777777777654331 111122222221 2222223334445455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-Cccccccccccccch--hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 179 AAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
..+..+...++.++..+.....+ +.......++.+... ...+.++..+++...|+|.|-..+....+|+||| +|
T Consensus 155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r 231 (456)
T PRK10238 155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP---EQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hh
Confidence 43333322222222222211211 111111111100000 1123456677888999999999999999999998 57
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 012927 256 TMKKASTMSIITTTIFYLFC 275 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~ 275 (453)
+.+|++..+.....+.|...
T Consensus 232 ~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 232 SIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999988888777777654
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.52 E-value=3.1e-11 Score=122.47 Aligned_cols=368 Identities=12% Similarity=0.031 Sum_probs=198.5
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+.+|+-+.++..+..+++++|+|++..|.. .+.+|. ..++..++.+++.+.....+.|.... .|..| .+.+.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~sG-----g~~~y 79 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPVTG-----SFAVY 79 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC-----CHHHH
Confidence 346778999999999999999999998766 667786 45667777777778778888886554 34444 67778
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
+++.+|++.++++.....+.....+.......+..++...+. .....+..+..+ .+.....+..|..+.+......
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~~~~~~~~~~~-~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MAQWIPALIAVA-LVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CchHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999998888888776666666666666665544321 112222222222 2222233334444443322222
Q ss_pred HHHHHHHHHHHHHHHHHHhC-Cccc--cccccccccc-h-hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 182 MSFAYSFIGFGLGVAKVIGN-GFVM--GSFSGVSTTT-S-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
.-+......+...+.....+ ++.. ...+++.+.. . ...+.++..++....|+|.+...+....+|+||| +|+
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~ 232 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNP---QVT 232 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhH
Confidence 11111111111111111111 1100 0111111100 0 1234567789999999999999999999999999 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccc----cccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHH
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 332 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (453)
.+|++..+.....++|.............+..+ +...-+..........+.+....++.+.+.--..+..-+.+..
T Consensus 233 iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~ 312 (461)
T PRK10746 233 LRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYA 312 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887654443333322111 1111111001122233444444455544443322222222222
Q ss_pred HHHh-hcCCCCCCccccccCCCCCCCCCCcchhHHH-HHHHHHHHHHHHHHcCChHHHHHHhhhhhc--chhhhhhhHHH
Q 012927 333 WICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCF-RTVYVVSVTAIAMSFPYFNQVLGVIGGVIF--WPLTIYFPVEM 408 (453)
Q Consensus 333 ~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~--~~l~~ilP~l~ 408 (453)
.-.+ ..|+. ..+.++.+. +.+-.. ..+..++...+....|+-+.+++.+-++++ ..+.++++.+.
T Consensus 313 ~a~~g~lP~~--~~~~~~~g~---------P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~ 381 (461)
T PRK10746 313 LAKNRQLPAA--MAKVSRHGV---------PVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILIS 381 (461)
T ss_pred HHhCCCcCHH--HHHhCCCCC---------cHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11210 111111112 222222 222223333444556766666665554432 46788888888
Q ss_pred HHHhhcc
Q 012927 409 YFKQMNI 415 (453)
Q Consensus 409 ~~~~~~~ 415 (453)
+++.||+
T Consensus 382 ~i~~r~~ 388 (461)
T PRK10746 382 QLRFRRA 388 (461)
T ss_pred HHHHHHh
Confidence 8887653
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.52 E-value=4.1e-11 Score=122.01 Aligned_cols=244 Identities=15% Similarity=0.084 Sum_probs=148.3
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+.+|+.+.++.....+++++|+|++..|. +++++|. ..+...++.+++......-+.|.... .+ +..++.+.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~-----~~~~~~~y 89 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NL-----EYKSFSDF 89 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cC-----CCCcHHHH
Confidence 35778899999999999999999999866 6888887 45666667777776666666775432 12 22356678
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
+++.+|+..++++.....+.......+.....+..+....+. .....+..+ ..++.........|....++.....
T Consensus 90 a~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~---~~~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 90 ASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD---LSDWVASLA-VVLLLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999888888766544445555555555443321 111122222 1122222333444555555544443
Q ss_pred HHHHHHHHHHHHHHHHHHhC-Ccccc---ccccccccch--hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 182 MSFAYSFIGFGLGVAKVIGN-GFVMG---SFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
..+...+..++..+.....+ +..++ ...+..+..+ .+.+.++..++....|+|.|...+....+|+||| +|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r 242 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDP---EK 242 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hh
Confidence 33322222222222211111 00000 1111111010 1233457889999999999999999999999998 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHh
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGY 280 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy 280 (453)
+.+|++..+.....+.|........
T Consensus 243 ~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 243 SLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 8999998777777888886655443
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.51 E-value=5.1e-11 Score=121.48 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=147.4
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+-+|+-+.++.....+++++|+|++..|.. .+.+|-...++..++.+++.......+.|.... .|+.| .+...
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aG-----G~y~y 84 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETG-----AFHVY 84 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC-----CHHHH
Confidence 346788999999999999999999988776 567785445667777777778788887886554 34444 45567
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
.++.+|+..++++.....+.....+.......+..+....+. .....+.+++. +++-....+..|.....+.....
T Consensus 85 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~-~~~~~in~~gvk~~~~~~~~~~~ 160 (471)
T PRK11387 85 AARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ---VPVWPWCLLFC-ALIFGLNVVSTRFFAEGEFWFSL 160 (471)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---CcHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 788999998888888777665555544444444443332221 11111222222 22222333444444443332222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc-----cccccccccccch-hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 182 MSFAYSFIGFGLGVAKVIGNGF-----VMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
.-+...+..+...+.......+ ..+..+++.+... .+...++..++....|+|.|-..+...-+|+||| +|
T Consensus 161 ~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r 237 (471)
T PRK11387 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENP---AK 237 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hh
Confidence 2221111111122211111000 0000111110000 1123456778888999999999999999999999 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGYAAF 283 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy~~f 283 (453)
+.+|++..+.....++|+..........
T Consensus 238 ~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 238 VIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 8999999999999999998766543333
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.51 E-value=6.2e-11 Score=120.92 Aligned_cols=246 Identities=13% Similarity=0.078 Sum_probs=149.6
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLG-WIAGPLAMVIFASVTLFATFLLCDCHRGPDPE-YGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~-~g~~~~~~y~~~~ 102 (453)
+|+-+.+++....+++++|+|++.+|....+.| -...++..++.++..........|...+ .|+ .| ...+..
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~-~P~~sG-----G~y~y~ 79 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK-KPELDG-----GIYAYA 79 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC-----ChhhhH
Confidence 668899999999999999999999999976544 3334555667777677777777776554 333 34 233355
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc-cccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA-CEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
++.+||+.+++......+........+.....+.+....+.. .......++.... .++.-....+..|....++.+..
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 80 REGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred HhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 899999999888887766555555555555555555443311 0111111222122 22223344555666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHH
Q 012927 181 VMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 260 (453)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (453)
...+...++.++..+.. .+......+..+.........+..+..++....|+|.|-.....+.+|+||+ |+.+|+
T Consensus 160 ~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPra 234 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHH
Confidence 44332222222222221 1111111011000000001233456788889999999999999999999984 899999
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q 012927 261 STMSIITTTIFYLFCGGFGYA 281 (453)
Q Consensus 261 ~~~a~~~~~~~y~~~g~~gy~ 281 (453)
+..+..++.++|.........
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987665443
No 28
>PRK11021 putative transporter; Provisional
Probab=99.49 E-value=1.5e-10 Score=116.06 Aligned_cols=228 Identities=13% Similarity=0.102 Sum_probs=138.8
Q ss_pred hHHHHHHHHHhhhhchhhhHHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhc
Q 012927 29 TLWTAVAHIITGVIGSGVLSLAWSM-AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 107 (453)
+.+++....+++|+|+|++.+|-.. +.+|- ..++..++.++..........|...+ .|+.| ......++.+|
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~aG-----G~y~y~~~~~G 74 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPHAG-----GPAHFVGMAFG 74 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CHHHhHHHHhC
Confidence 5688999999999999999998874 45564 56777778888877778888886654 34444 34456678999
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHH-HHHHHHHHhhcCCCCCchhhHHHHHHHHHHHH
Q 012927 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYML-IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 186 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 186 (453)
|+.+++......+.......+........+....+.. ....+.+ +...++.-....+..|...+++....+..+
T Consensus 75 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~-- 149 (410)
T PRK11021 75 PRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS---SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIV-- 149 (410)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--
Confidence 9988888776665433333333333334443333211 1112222 112222223334444444444443222111
Q ss_pred HHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHH
Q 012927 187 SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSII 266 (453)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~ 266 (453)
.++.... ..++....+. .+++.. ..++.++..++....|+|.+.......-+|+||| +|+.+|++..+..
T Consensus 150 --~i~~~~~---~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~ 219 (410)
T PRK11021 150 --ALVVAIW---WAGDIKPADI-PFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLL 219 (410)
T ss_pred --HHHHHHH---HHcCCchhcC-CCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHH
Confidence 1111111 1111111111 111111 1234567889999999999999999999999998 5789999999999
Q ss_pred HHHHHHHHHHhH
Q 012927 267 TTTIFYLFCGGF 278 (453)
Q Consensus 267 ~~~~~y~~~g~~ 278 (453)
++.++|......
T Consensus 220 ~~~~lYil~~~~ 231 (410)
T PRK11021 220 LAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 29
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.48 E-value=3.9e-11 Score=124.16 Aligned_cols=247 Identities=14% Similarity=0.083 Sum_probs=151.3
Q ss_pred CCCccccchHHHHHHHHHhhhhchhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccH
Q 012927 21 EPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSM--AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSY 98 (453)
Q Consensus 21 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y 98 (453)
+++.+|+-+.++.+..-++.++|+|++.+|-.. ..+|.. .++..++.++.+........|.... .|+.| ..+.|
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sG--g~Y~y 98 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAG--SAYLY 98 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--cceee
Confidence 344578889999999999999999999998653 347754 4556667777777777777776554 44555 45666
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc------------cc-ccc-ccchhHHHHHHHHHHhh
Q 012927 99 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE------------AA-CEY-SDTYYMLIFGAVQLILS 164 (453)
Q Consensus 99 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~------------~~-~~~-~~~~~~~i~~~i~~pl~ 164 (453)
. ++.+|+..++++.....+.....+.......++.+....+ .. ... .......+..+++.-..
T Consensus 99 ~---~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~l 175 (557)
T TIGR00906 99 S---YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVL 175 (557)
T ss_pred H---HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHH
Confidence 5 5668999888888887776655554444443443332211 00 011 11122222222222334
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-ccccccchhhHHHHHHHHHhhHhhccccchhHHhH
Q 012927 165 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF-SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI 243 (453)
Q Consensus 165 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 243 (453)
..+..|...+++.+.....+...+++++....+...+ ...... .+.++..+ ..+.+++.+.....|+|.|-..+...
T Consensus 176 n~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 176 LSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4556677666666555544433222222222221100 000000 00001111 12356788999999999999999999
Q ss_pred HhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 012927 244 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 279 (453)
Q Consensus 244 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 279 (453)
-+|.||| +|+.+|++..+..+++++|..+...-
T Consensus 254 aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 254 GEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HHhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 57899999999999999999876653
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.47 E-value=2.6e-10 Score=115.88 Aligned_cols=242 Identities=16% Similarity=0.098 Sum_probs=145.5
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+.+|+-+.++.....+++++|+|++.+|.. .+.+|- ..++..++.++........+.|...+ .|..| ...+.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~G-----g~y~y 78 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVH-NPAAS-----SFSRY 78 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC-----CHHHH
Confidence 346778999999999999999999999776 566775 46777788888888888888886654 44434 34446
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
+++.+||..++++.....+.....+.......+..+....+ ......+.+.. .++.-....+..|....+......
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~ln~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP---TVPHWIWVLSV-VLIICAVNLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCChHHHHHHH-HHHHHHHHHccchhHHHHHHHHHH
Confidence 68899999998888877766544444444444444443322 11112222222 222223344455555555443333
Q ss_pred HHHHHHHHHHHHHHHHH---HhCCcccccccc-ccccch-hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 182 MSFAYSFIGFGLGVAKV---IGNGFVMGSFSG-VSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 182 ~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
..+...+..+...+.-. ..+........+ +++... ...+.++..++....|+|.|........+|+||| +|+
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~ 231 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKS 231 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhH
Confidence 22221111111111111 111100000110 111000 1223467788999999999999999999999999 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 012927 257 MKKASTMSIITTTIFYLFCGGF 278 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~ 278 (453)
.+|++..+.....++|......
T Consensus 232 iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 232 IPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888766443
No 31
>TIGR00909 2A0306 amino acid transporter.
Probab=99.46 E-value=2.9e-11 Score=122.01 Aligned_cols=238 Identities=16% Similarity=0.135 Sum_probs=153.3
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
+|+-+.++.+...+++++|+|++.+|.... .+|. ..++..++.++..........|..++ .|+.| ..+ +..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~-~p~~G--g~y---~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAM-LPVAG--SPY---TYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC--cce---eeHH
Confidence 467889999999999999999999997754 4453 35556666777777777777776554 33333 233 4457
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc-----cccccc-----cch--hHHHHHHHHHHhhcCCCCCc
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE-----AACEYS-----DTY--YMLIFGAVQLILSQAPDFHN 171 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~-----~~~--~~~i~~~i~~pl~~~~~l~~ 171 (453)
+.+||+.+++......+.....+..+....++.+....+ .+.+.. +.. +..+...++.-....+..|.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~ 154 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKE 154 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHH
Confidence 789999999888888887777777777777777654432 111000 001 11222223333344555666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCC
Q 012927 172 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 251 (453)
Q Consensus 172 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 251 (453)
..+++.+.....+...++.+.....+. + ..++..+. + ....++..++....++|.+........+|+|||
T Consensus 155 ~~~~~~v~~~~~i~~l~~~~~~~~~~~--~---~~~~~~~~---~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p- 224 (429)
T TIGR00909 155 SGKVNDILVVLKVAALLLFAALGAIHF--A---SNNYTPFM---P-MGFGGVGAATALVFFAFIGFEAISTAAEEVKNP- 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhC--c---HHhcCCCC---C-CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc-
Confidence 666666655544433222222222211 1 11111111 1 123456788999999999999999999999998
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHHhh
Q 012927 252 PANQTMKKASTMSIITTTIFYLFCGGFGYA 281 (453)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 281 (453)
+|+.+|++..+..+..++|.........
T Consensus 225 --~r~ip~ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 225 --ERDIPKAIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999988665443
No 32
>PRK10836 lysine transporter; Provisional
Probab=99.45 E-value=5.7e-10 Score=114.33 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=139.4
Q ss_pred CCccccchHHHHHHHHHhhhhchhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
++.+|+-+.++.....+++++|+|++.+|. +.+++|-...++..++.+++....+..+.|...+ .|+.| ....
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~sG-----g~y~ 84 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPVSG-----SFAT 84 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCC-----CHHH
Confidence 345678899999999999999999999997 5777886556888888888888888888886654 34444 4445
Q ss_pred HHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 012927 101 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
.+++.+|+..++++.....+........-.......+....+. .....+..+..+ ++-.......|..+.......
T Consensus 85 y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~-~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 85 YGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD---TPGWIWSALFLG-VIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---CchHHHHHHHHH-HHHHHHHHcchhhhhhHHHHH
Confidence 5567778877777766655533222222222222222222211 111112221111 122222333343333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCcccccccccccc-ch-hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 181 VMSFAYSFIGFGLGVAKVIG--NGFVMGSFSGVSTT-TS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
+.-+...+..+...+..... .........++.+. .+ ...+.....+.....|+|.+...+....+|+||| +|+
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~ 237 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDP---AKN 237 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHH
Confidence 11111111111111111111 11000001111100 01 1123345556666779999999999999999999 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
.+|++..++....++|..........
T Consensus 238 iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 238 IPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99999999999999999776544333
No 33
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.45 E-value=6.7e-11 Score=121.60 Aligned_cols=248 Identities=15% Similarity=0.147 Sum_probs=143.6
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhH-HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIA-GPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~-gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
+.+|+-+.++.....+++++|+|++..|.. .+++|-.. ..+..++.++..........|.... .|+.| ..+.|
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P~sG--G~y~~-- 113 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IPKSG--GEYNY-- 113 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC--chhhh--
Confidence 346778999999999999999999999876 55667432 2344556666666677777776554 34444 23333
Q ss_pred HHHHHhccccchhhHHHHHH-HHHhHHHHHHHHhhhhhhc-ccccccccccc-hhHH-HHHHHHHHhhcCCCCCchhhHH
Q 012927 101 AVDMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRE-GHEAACEYSDT-YYML-IFGAVQLILSQAPDFHNIQSLS 176 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~-~~~~-i~~~i~~pl~~~~~l~~l~~~s 176 (453)
.++.+|+..+++......+ ...+.+..+....++.+.+ ..+. ...+.. ...+ +..+++.-....+..|....++
T Consensus 114 -~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~ 191 (501)
T TIGR00911 114 -ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-CEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQ 191 (501)
T ss_pred -HHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4668999887766654433 2223344444545554322 2211 111111 1111 1112222233344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccc-cccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 177 VIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
.+.....+...++.++..+.....+.....+.. .+++. .....++..++....|+|.|-..+..+.+|+||| +|
T Consensus 192 ~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r 266 (501)
T TIGR00911 192 DIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT--ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC--CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hh
Confidence 544444333222222223322222111111111 11111 1224567788999999999999999999999998 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
+.+|++..+..+..++|..........
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~ 293 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTV 293 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999886554333
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.44 E-value=5.5e-10 Score=114.29 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=152.8
Q ss_pred ccchHHHHHHHHHhhhhchhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
|+.+.++.....++.++|+|++..|. +.+++|-...++..++.+++.......+.|.... .|..| -.|...+++
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~-~P~~g----G~~~~~~~~ 76 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATF-YPVVS----GSFATYASR 76 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CCHHHHHHH
Confidence 56788899999999999999999764 4677775444666777777777777777886654 33212 267788899
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHH
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSF 184 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (453)
.+|+..++++.....+.....+.......+..+....+ ......+..+..+ +.-+...+..|....++.......+
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~~~ki 152 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD---KVNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFSSIKI 152 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999999988888877777777777777766654332 1222233322222 2223344455555555544432222
Q ss_pred HHHHHHHHHHHHHHHhCCcccc--c---c---ccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 185 AYSFIGFGLGVAKVIGNGFVMG--S---F---SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~--~---~---~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
...+..++..+.....+.+... . + .++++......+.++..++....|+|.|-.....+.+|+||| +|+
T Consensus 153 ~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~ 229 (478)
T TIGR00913 153 LAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANP---RKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcCh---hhH
Confidence 2211112222222222111110 0 0 111111001124567789999999999999999999999998 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 012927 257 MKKASTMSIITTTIFYLFCGGF 278 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~ 278 (453)
.+|++..+.....++|......
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.41 E-value=3.8e-10 Score=113.79 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhc
Q 012927 29 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~-~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G 107 (453)
++++++...+++++|+|+...| ...+.|.. .++..++.+.+. ........|..++ .|+.| ......++.+|
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G-----G~y~~~~~~~g 73 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG-----GIYVWVSRAFG 73 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST-----THHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC-----eeeehhhhccc
Confidence 5788999999999999999999 77677765 555555555554 4555666676544 44444 55567788899
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc-cccccchhHH-HHHHHHHHhhcCCCCCchhhHHHHHHHHHH-
Q 012927 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA-CEYSDTYYML-IFGAVQLILSQAPDFHNIQSLSVIAAVMSF- 184 (453)
Q Consensus 108 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~- 184 (453)
|+.+++......+.....+.++.....+.+....+.. .......+.+ +..++.......+..|..++++.......+
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 153 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIV 153 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhh
Confidence 9999999999988888888888888888887654321 1111112222 222222333445555666666555554444
Q ss_pred HHHHHHHHHHHHHHHhCCccc--ccc-ccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHH
Q 012927 185 AYSFIGFGLGVAKVIGNGFVM--GSF-SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 261 (453)
Q Consensus 185 ~~~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~ 261 (453)
...++.+...+.....+.... ... +..++ .+...+.+++...|+|.|-.......+|+|| |+.+|++
T Consensus 154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai 223 (426)
T PF13520_consen 154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHH
T ss_pred hhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc-----hhheeec
Confidence 222222222332221111100 000 01111 1123578899999999999999999999774 7899999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCcc---cccc---ccc-cccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHH
Q 012927 262 TMSIITTTIFYLFCGGFGYAAFGDNTP---GNLL---TGF-GFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 334 (453)
Q Consensus 262 ~~a~~~~~~~y~~~g~~gy~~fg~~~~---~~il---~~~-~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 334 (453)
..+..+..++|...........+++.. ++.. ..+ +....++...+..+...+..+.+.........+.+...-
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 999999999999987766665554321 1111 011 000123566666677777777766665555555555544
Q ss_pred H
Q 012927 335 C 335 (453)
Q Consensus 335 ~ 335 (453)
+
T Consensus 304 ~ 304 (426)
T PF13520_consen 304 R 304 (426)
T ss_dssp H
T ss_pred c
Confidence 3
No 36
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.40 E-value=2.6e-11 Score=118.87 Aligned_cols=368 Identities=14% Similarity=0.127 Sum_probs=211.6
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHHH-HhC-hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLG-WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G-~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
..+|+-+.+.++..++++++|+|++..|.... ++| ...+++..++.++++......-.|.... -|+.| ....|
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksG--gd~ay-- 83 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSG--GDYAY-- 83 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCC--cchhh--
Confidence 34678899999999999999999999999955 555 6667777888888899988888886654 34445 23333
Q ss_pred HHHHHhccccchhhHHHHHHHHHh-HHHHHHHHhhhh-hhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 101 AVDMCLGKTNAWACSFFVHVGLYG-TAIAYTVTSAIS-MREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~~~~g-~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
..++||+.........-.+.... .+..+.+..++. ++.+.+ .|...+ ...-.++..++.+....|....++.+.+
T Consensus 84 -i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c~~p~-~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 84 -ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LCDVPR-VASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred -HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CCCCch-HHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35678888776555544444444 447888888887 666665 454433 2222333333333334455555555444
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 179 AAVMSFAY---SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 179 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
-.+.++.= +.++++..++....+...+.+..++. ....+..+...++-.-.|||.+-+.+-.+.+|+||| +|
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP---~k 235 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc---cc
Confidence 44333322 22222233332222221110000011 112333457789999999999999999999999999 68
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhcC--CCcccc-ccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHH
Q 012927 256 TMKKASTMSIITTTIFYLFCGGFGYAAFG--DNTPGN-LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 332 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fg--~~~~~~-il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (453)
++||++..++.++++.|+++=+..+..-. |-..++ +-..+.+..-+.....+..+..++.+.+.-..++..-..+..
T Consensus 236 tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 236 TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999998665544332 111111 111121000111224555556666666554444333222222
Q ss_pred HHHh-hcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhHHHHHH
Q 012927 333 WICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFK 411 (453)
Q Consensus 333 ~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~~~ 411 (453)
...+ ..|+. + ...++ +.+++ .....+-....++..+..|+..+++..+=.-.....+.+=++++++
T Consensus 316 ~areG~LP~~-~-s~i~~--------~~~TP---~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR 382 (479)
T KOG1287|consen 316 GAREGHLPAF-F-SMISV--------RRFTP---RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLR 382 (479)
T ss_pred HHHccCccHH-H-HhhcC--------CCCCC---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11110 0 00000 00011 1122333344455556678888888888776666777777888888
Q ss_pred hhccc
Q 012927 412 QMNIE 416 (453)
Q Consensus 412 ~~~~~ 416 (453)
.++++
T Consensus 383 ~k~p~ 387 (479)
T KOG1287|consen 383 WKHPP 387 (479)
T ss_pred hhCCC
Confidence 76654
No 37
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.39 E-value=1.2e-10 Score=114.74 Aligned_cols=237 Identities=15% Similarity=0.122 Sum_probs=151.4
Q ss_pred cchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHh
Q 012927 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 106 (453)
+-|.+|....++++++|+|++.+|....+.+--.+.+..++.++........+.+..++. +..+..|..++.+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-------p~~~~~~~~~~~~ 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-------PEKNFSEILSKYL 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 567889999999999999999999987764444566677777777777778788766542 2237999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHH-HHHHHHhhcCCCCCchhhHHHHHHHHHHH
Q 012927 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIF-GAVQLILSQAPDFHNIQSLSVIAAVMSFA 185 (453)
Q Consensus 107 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~-~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 185 (453)
||+.+++..+...++....+.......++.++.... + +.+.+.+.. .++.......+.++....++.+.....+.
T Consensus 75 Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~---~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~ 150 (359)
T TIGR00912 75 GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL-P---RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLI 150 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999998888877777666666666666666654321 1 123333322 22222233344555555555544433322
Q ss_pred HHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHH-hhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHH
Q 012927 186 YSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQAL-GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMS 264 (453)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a 264 (453)
.. .+.... ...++. +.++..+.. ..+..+...+. +...++|.+...+....+++||| |+.+|+...+
T Consensus 151 ~~--~~il~~-~~~~~~----~~~~l~P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~ 218 (359)
T TIGR00912 151 LF--ILVLIL-LAPKLG----NIKNLLPVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKA 218 (359)
T ss_pred HH--HHHHHH-Hhcccc----cHHHccCcc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHH
Confidence 10 011111 111111 111111111 11123333333 47888999888888888999987 7899999999
Q ss_pred HHHHHHHHHHHHhHHhhhcCCC
Q 012927 265 IITTTIFYLFCGGFGYAAFGDN 286 (453)
Q Consensus 265 ~~~~~~~y~~~g~~gy~~fg~~ 286 (453)
..++.++|...-......+|.+
T Consensus 219 ~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 219 IIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred HHHHHHHHHHHHHHHHheecHH
Confidence 9999999998888877888754
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.37 E-value=3.3e-10 Score=114.69 Aligned_cols=236 Identities=13% Similarity=0.078 Sum_probs=143.4
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.+|+-+.++.....+++++|....+.+.+++++|+..-++..++.++.....+..+.|...+ .|..| .....++
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~~G-----g~y~~~~ 78 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPTAG-----GGYGFAR 78 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC-----CHHHHHH
Confidence 46778888888888999998555556888889998655555666666666666667775544 34444 3344668
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMS 183 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (453)
+.+|+..+++......+........+....++.+....+.. ......+++ ..++-....+..|....++....+..
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~~~~~~~~~-~~~~~~ln~~g~~~~~~i~~~~~~~~ 154 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---PGWLAALVF-YIVFIGINILGVGEAAKLEFVVTAVA 154 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---chhHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999988888888777777778888888776554321 111111111 11222222333444444443333222
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccc-cc-ccccc--hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHH
Q 012927 184 FAYSFIGFGLGVAKVIGNGFVMGSF-SG-VSTTT--SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 259 (453)
Q Consensus 184 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 259 (453)
+....+ + ... ...+.. ..+. .. ..+.+ ....+.++..++....|+|.+........+|+||| +|+.+|
T Consensus 155 ~~~l~i-~-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~ipr 226 (442)
T TIGR00908 155 IIALGV-F-IGA--MVPHFD-SANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP---KRDIPR 226 (442)
T ss_pred HHHHHH-H-HHH--HhccCC-HHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccCH
Confidence 211111 1 111 111100 0000 00 00000 01123467788888999999999999999999998 578999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012927 260 ASTMSIITTTIFYLFCGG 277 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~ 277 (453)
++..+..+..++|...-.
T Consensus 227 ai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 227 GLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888876644
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.36 E-value=9.7e-10 Score=111.37 Aligned_cols=243 Identities=12% Similarity=0.123 Sum_probs=142.7
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHH-HHhChh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWI-AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~v-~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
+.+|+-+.++.....++.++|+|++..|... .+.|-. ..++..++.+++....+....|.... .|+.| ..+.|.
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~-~P~~G--G~y~y~- 80 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTA-YPENG--ADYVYL- 80 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC--CceeeH-
Confidence 3467889999999999999999999998864 455633 34555666667777777777776554 34445 456664
Q ss_pred HHHHHhccccchhhHHHHHH-HHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 012927 101 AVDMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (453)
++.+||..+++....... ........+....++.+....+.. .. ......+..+..+-....+..+....++.+.
T Consensus 81 --~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-~~-~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~ 156 (445)
T PRK11357 81 --KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-PL-LGKFIAAGLIIAFMLLHLRSVEGGAAFQTLI 156 (445)
T ss_pred --HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 577999888777665432 223333445555555544322210 00 0011111112222223344555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHH
Q 012927 180 AVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKK 259 (453)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 259 (453)
.+..+...+++++..+.. ..+.+.....+ .+ ......+.++..+++...|+|.+-.......+|+||| +|+.+|
T Consensus 157 ~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~ 230 (445)
T PRK11357 157 TIAKIIPFTIVIGLGIFW-FKAENFAAPTT-TA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPR 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCccccCCCc-cc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchH
Confidence 433332222222222211 12111111000 00 0111123456788899999999999999999999999 578999
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 012927 260 ASTMSIITTTIFYLFCGGFG 279 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~~g 279 (453)
++..+..++.++|.......
T Consensus 231 Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 231 ALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776543
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.35 E-value=1.6e-09 Score=109.71 Aligned_cols=346 Identities=14% Similarity=0.092 Sum_probs=186.7
Q ss_pred HhhhhchhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHH
Q 012927 38 ITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (453)
Q Consensus 38 ~~~~iG~GiL~LP~-af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~ 116 (453)
+++++|+|++..|. +.+++|. ..++..++.+++....+....|...+ .|+.| ...+.+++.+||+.++++..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~~G-----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPDTG-----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CHHHHHHHHcChHHHHHHHH
Confidence 57899999999988 5778886 47788888888888888888886654 34444 56667789999999998888
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 012927 117 FVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV 195 (453)
Q Consensus 117 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~ 195 (453)
...+.....+.......+..+....+ . ...+..... .+++-+......|..+.+.......-+...+..+...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP---G--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---c--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88776655555444444444433221 1 122222222 22222333444555555554444333322222222222
Q ss_pred HHHHhCCccc--ccccc-ccccc-hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHH
Q 012927 196 AKVIGNGFVM--GSFSG-VSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIF 271 (453)
Q Consensus 196 ~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~ 271 (453)
.......+.. ..... .++.. ....+.++..++....|+|.|-..+....+|+||| +|+.+|++..+.....++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~ 228 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIF 228 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHH
Confidence 2111111100 00000 01000 01234578899999999999999999999999998 578999999999999999
Q ss_pred HHHHHhHHhhhcCCC-cc----c---cccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHh-hcCCCC
Q 012927 272 YLFCGGFGYAAFGDN-TP----G---NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-KFPENG 342 (453)
Q Consensus 272 y~~~g~~gy~~fg~~-~~----~---~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~-~~~~~~ 342 (453)
|+...+.....-..+ .+ + ...+.. ...+...+.++...++.+.+..-......+.+...-.+ ..|+
T Consensus 229 Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~-- 303 (446)
T PRK10197 229 YLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA-- 303 (446)
T ss_pred HHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--
Confidence 997655432222211 11 1 111122 12334455555555555555543333333333322211 1121
Q ss_pred CCccccccCCCCCCCCCCcchhHHHHHH-HHHHHHHHHHHcC--ChHHHHHHhhhhhcchhhhhhhHHHHHHhhc
Q 012927 343 FLNNEFFLKPPLMPAFRWNPLRLCFRTV-YVVSVTAIAMSFP--YFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN 414 (453)
Q Consensus 343 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~iA~~vp--~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~ 414 (453)
+..+.++.+. +.+-..... ..++..+.....| .++.++++.+... .+.|.++.+.+++.||
T Consensus 304 ~~~~~~~~~~---------P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 304 VMGKINRSKT---------PYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHhhCcCCC---------cHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 1111111111 233222222 2222222222223 3666777766555 4888888888887765
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.34 E-value=9.4e-10 Score=119.35 Aligned_cols=244 Identities=16% Similarity=0.060 Sum_probs=149.9
Q ss_pred cccchHHHHHHHH-HhhhhchhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHI-ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
.++-+++++++.- +.+++|+|++- +++...++|...+++..++.++++..+..-+.+......++.| . .| .+.
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G--~Y-~yi 149 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--G--AY-YLI 149 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--H--HH-HHH
Confidence 3456777777777 99999999987 6777889998888899999999999999888886654234444 2 23 344
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccc------c-ccchhHHHHHHHHHHhhcCCCCCchhhH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACE------Y-SDTYYMLIFGAVQLILSQAPDFHNIQSL 175 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~------~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 175 (453)
.+.+|+..+..+.+...+.+...+..|.+..++.+...++..+. . ..+.+.+++.+++.. ......+....+
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~-In~~Gvk~~ak~ 228 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLG-ISFAGMEWENKA 228 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHH-HHHhhHHHHHHH
Confidence 77889988888888888888888889988888887765432111 1 112222222222222 223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccccc-cc-chhhHHH-HHHHHHhhHhhccccchhHHhHHhhhC
Q 012927 176 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG----SFSGVS-TT-TSIEKMW-LVAQALGDIAFAYPYSLILIEIQDTLK 248 (453)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~-~~-~~~~~~~-~~~~~~~~~~faf~~~~~~~~i~~~m~ 248 (453)
..+..+..++..+.+++..+... .+.+..+ +...+. +. ....... .++..+++++.||.|......+-+|+|
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElK 307 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLK 307 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333222211111111111000 0000000 000000 00 0011111 266788888889999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhH
Q 012927 249 SPPPANQTMKKASTMSIITTTIFYLFCGGF 278 (453)
Q Consensus 249 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 278 (453)
|| +|+.+|++..++.+++++|+.+.+.
T Consensus 308 nP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 308 DP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred Ch---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5799999999999999999988753
No 42
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.20 E-value=9.9e-09 Score=99.44 Aligned_cols=362 Identities=14% Similarity=0.120 Sum_probs=208.1
Q ss_pred ccccchHHHHHHHHHhhhhchhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
-+|..+.++--+.-+.+.||+|.+ +-..+.+.+|-- -++..++.|++.+.=++.|.|...+ +|. ..++.+.+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~-----~gSF~~~a 83 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPV-----SGSFSDYA 83 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCcHHHHH
Confidence 356667778888889999999975 356667778843 3556677888888888889887665 443 34999999
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHH--HHHHHH--HHhhcCCCCCchh-hHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYML--IFGAVQ--LILSQAPDFHNIQ-SLSV 177 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~--i~~~i~--~pl~~~~~l~~l~-~~s~ 177 (453)
++.+|++.+++......+.-...+++-+..++..++...+.. +.|+. +..+++ .=+...|...++. +++.
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-----P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-----PQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988766422 34433 222222 2334455555555 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccc--hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 178 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT--SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
+=+..++.+.++.... +...+.++.....+++..+.- -.+.+.+++.++-+.+|||.+...+--..+|-||| +|
T Consensus 159 IKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP---~k 234 (462)
T COG1113 159 IKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP---EK 234 (462)
T ss_pred HHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh---hh
Confidence 5555444333322222 222222222111222221100 12345678899999999999999999999999999 56
Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHH
Q 012927 256 TMKKASTMSIITTTIFYL-----FCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHF 330 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (453)
..+|++..-..=..++|. ++.+.-+-.++++. ++...-|...+-.+...+.+.....+.+.+.---.+..-+.+
T Consensus 235 ~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL 313 (462)
T COG1113 235 AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRML 313 (462)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHH
Confidence 788877755544444554 44444444444433 333333321112222233333333333333211122222222
Q ss_pred HHHHHh-hcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcc--hhhhhhhHH
Q 012927 331 EKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW--PLTIYFPVE 407 (453)
Q Consensus 331 ~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~v~~l~Ga~~~~--~l~~ilP~l 407 (453)
..+..+ .-|+. ..+-.+.++| ..-..+......+..++.+..| +.++.++=+.++. +..+.+=.+
T Consensus 314 ~~la~~g~APk~--~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~ 381 (462)
T COG1113 314 YSLAKQGDAPKA--FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILL 381 (462)
T ss_pred HHHhhcCcccHh--HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 11110 0000011122 3334445566677888888889 5555555444433 333444456
Q ss_pred HHHHhhc
Q 012927 408 MYFKQMN 414 (453)
Q Consensus 408 ~~~~~~~ 414 (453)
.|+|.||
T Consensus 382 s~l~~rk 388 (462)
T COG1113 382 SQLKLRK 388 (462)
T ss_pred HHHHHHh
Confidence 6888776
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.20 E-value=3.6e-08 Score=100.54 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=154.5
Q ss_pred CccccchHHH-HHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 23 FIKRTGTLWT-AVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 23 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
+.+++.+.++ ......+.++|.|++.+|......+ ....+..++.++..........|...+ .|+.| .+.+.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G-----G~y~~ 81 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG-----GAYAY 81 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-----Ceeee
Confidence 3455666666 7778899999999999999987766 222333444555555555666665553 44444 44455
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc--ccccchhHHHHH--HHHHHhhcCCCCCchhhHHH
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC--EYSDTYYMLIFG--AVQLILSQAPDFHNIQSLSV 177 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~ 177 (453)
.++.+|++.++.+.....+.......+.....+..+....+... ......+..+.. ....-+...+..|....+..
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 68999998888888888888888888887777776665443210 111111222111 12222334445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccc-hhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhh
Q 012927 178 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 256 (453)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 256 (453)
......+...++.....+.....+. .+. +.+.. ..........++....++|.|-....+..+|+||| +|+
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp---~r~ 233 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSN---GNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP---KRT 233 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc---ccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc---ccc
Confidence 5555444433333333332222111 111 11111 11122357789999999999999999999999998 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAAFGD 285 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~ 285 (453)
.+|++..+.....++|...........++
T Consensus 234 ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 234 IPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999999999888877666654
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.13 E-value=2.9e-07 Score=94.10 Aligned_cols=249 Identities=12% Similarity=-0.024 Sum_probs=138.4
Q ss_pred ccccchHHHHHHHHHhhh-hchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 24 IKRTGTLWTAVAHIITGV-IGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~-iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
-+|+-+.++.+..-++.+ +|+|+.++|.. ..++|- ..+...++.++........+.|...+ .|..| .....
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aG-----G~Y~~ 83 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISG-----AIYQW 83 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC-----CHHHH
Confidence 457788888887777764 89999997655 566776 45666666777777777777776554 44444 33344
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccc------ccccccc---c--chhHHHHHH-HHHHhhcCCCC
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGH------EAACEYS---D--TYYMLIFGA-VQLILSQAPDF 169 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~------~~~~~~~---~--~~~~~i~~~-i~~pl~~~~~l 169 (453)
+++.+||...+++.....+................+.... ..+..+. . ..+++...+ ++.-+...+..
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~ 163 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGV 163 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788899988888887776655444443333333332211 0011111 1 112222221 22222334445
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCC
Q 012927 170 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 249 (453)
Q Consensus 170 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 249 (453)
|....+..+..+..+...+++++...... .+.+ ........+.........+..+.....|+|.|-.....+-+|+||
T Consensus 164 k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~kn 241 (475)
T TIGR03428 164 EWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGP-GVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKN 241 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-ceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcC
Confidence 55666555544443322222222222111 1110 000000000000111234555666778999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 012927 250 PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 284 (453)
Q Consensus 250 p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg 284 (453)
| +|+.+|++..+..+..++|...-+......+
T Consensus 242 P---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 242 P---RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred c---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9 6799999999999887766655444333333
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.06 E-value=1.2e-07 Score=97.20 Aligned_cols=243 Identities=11% Similarity=0.070 Sum_probs=126.1
Q ss_pred ccccchHHHHHHHHHhhhhc--hhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIG--SGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
-+|+-+.++.+..-+. ++| +|+.. .+.+..++|-...+...++.+++....+..+.|.... .|..| ....
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~G-----g~y~ 82 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSG-----GQYF 82 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCc-----cHHH
Confidence 3566777776655555 344 56644 4556777887666777778888888888888886654 44444 3344
Q ss_pred HHHHHhc----cccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc--ccc--ccccch--hHHHHH-HHHHHhhcCCCC
Q 012927 101 AVDMCLG----KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE--AAC--EYSDTY--YMLIFG-AVQLILSQAPDF 169 (453)
Q Consensus 101 ~~~~~~G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~--~~~--~~~~~~--~~~i~~-~i~~pl~~~~~l 169 (453)
.+++.+| +...+++.....+.....+.+.....++.+..... .+. ....++ ..+... ..+.-.......
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~ 162 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPT 162 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhH
Confidence 4456665 44556666666666666555555555554443211 000 111111 111111 122222333334
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cccccccccccccc-h-hhHHHHHHHHHhhHhhccccchhHHhHHhh
Q 012927 170 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTT-S-IEKMWLVAQALGDIAFAYPYSLILIEIQDT 246 (453)
Q Consensus 170 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 246 (453)
|.+..+.....+..+...+++.+..+.....+ .+.+....++.+.+ . ....+....++....|+|.+-.......+|
T Consensus 163 k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E 242 (482)
T TIGR00907 163 KWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE 242 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh
Confidence 44444444333222221111111111110000 00000111111100 0 011134556666678999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 012927 247 LKSPPPANQTMKKASTMSIITTTIFYLFCG 276 (453)
Q Consensus 247 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g 276 (453)
+||| +|+.+|++..+..+..+++....
T Consensus 243 ~knP---~r~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 243 IENP---EVVGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred cCCh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence 9999 68999999999887766544433
No 46
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.04 E-value=5.1e-07 Score=92.78 Aligned_cols=241 Identities=12% Similarity=0.116 Sum_probs=128.0
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCC-CCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLF-ATFLLCDCHRGPDPE-YGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~-s~~~l~~~~~~~~~~-~g~~~~~~y~~~~ 102 (453)
+|+-++++-....+++++|.+ .+|.++++.|.. +++..++.+++... ......|.... .|. .| .-..-.
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~aG-----G~Y~w~ 76 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSA-FKDEKG-----GIYSWM 76 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCC-----cHHHHH
Confidence 567899999888899999976 568888888864 55555555554333 33445665443 332 34 344456
Q ss_pred HHHhccccchhhHHHHHHHHHhHH---HH-------HHHHhhhhhhcccccccccccchhHHHHHH---HHHHhhcCCCC
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTA---IA-------YTVTSAISMREGHEAACEYSDTYYMLIFGA---VQLILSQAPDF 169 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~---~~-------y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~---i~~pl~~~~~l 169 (453)
++++||+.+++............. .. +.. .+....+..+.. ..+......+..+ .+.-....+.+
T Consensus 77 ~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 77 NKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHFL-GLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhhh-cccchHHHHHHHHHHHHHHHHHHccch
Confidence 888999888765443322222111 11 111 111111110000 1111111111111 12333445666
Q ss_pred CchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhCCcccc--ccccc-cccc-hhhHHHHHHHHHhhHhhccccchhHHhHH
Q 012927 170 HNIQSLSVIAAVMSFAYSF-IGFGLGVAKVIGNGFVMG--SFSGV-STTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQ 244 (453)
Q Consensus 170 ~~l~~~s~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 244 (453)
+..+.++.++....+...+ .++...+.....+...+. +..++ ++.. ......+...++....|+|.+...+....
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6666666554433222111 111111111111111100 00111 0000 11111346677888999999999999999
Q ss_pred hhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 012927 245 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 279 (453)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 279 (453)
+|+||| +|+.+|++..+.....++|....++.
T Consensus 235 ~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 235 DKTENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HhccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 57899999999999999999765443
No 47
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.04 E-value=3e-07 Score=94.51 Aligned_cols=236 Identities=14% Similarity=0.071 Sum_probs=112.9
Q ss_pred cccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHH--HHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLF--ATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~--s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
++|-+.++-++..+.+. .++-.+| .+++.| .+.+...+.+.+.+. .+....|......+..| ..+.| +
T Consensus 3 ~~~l~~~~~~~~~~~~v--~~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~w---v 72 (507)
T TIGR00910 3 AKKLSLFGFFAITASMV--LAVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAW---V 72 (507)
T ss_pred CcEeeHHHHHHHHHHHH--HHHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeee---h
Confidence 34566665555554444 4667888 467778 344444444444433 44555565443211233 33444 4
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHH---HHHhhcCCCCCchhhHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAV---QLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i---~~pl~~~~~l~~l~~~s~~~ 179 (453)
++++|++.+++..+...+................+......+.......+..+..++ ...+...+..|....++..+
T Consensus 73 ~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~ 152 (507)
T TIGR00910 73 SNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAG 152 (507)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 899999988876555554333211111111111111111111001112222222211 12223344444444444333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhCCcccc--cccc-ccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchh
Q 012927 180 AVMS-FAYSFIGFGLGVAKVIGNGFVMG--SFSG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 255 (453)
Q Consensus 180 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 255 (453)
.+.. +...++++.........+.+... +..+ .|+... ......+....|+|.|-.......+|+||| +|
T Consensus 153 ~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~faf~G~E~~a~~a~E~knP---~r 225 (507)
T TIGR00910 153 FFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSK----VGTLVVFVAFIGAYMGVEASASHINELENP---GR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCccc----ccHHHHHHHHHHHHhcHHHHHHHHHHccCC---cc
Confidence 2211 11111222222222222221110 0111 111111 123345555689999999999999999999 57
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 012927 256 TMKKASTMSIITTTIFYLFCGG 277 (453)
Q Consensus 256 ~~~~~~~~a~~~~~~~y~~~g~ 277 (453)
+++|++..+..+..++|....+
T Consensus 226 ~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 226 DYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998876444
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.02 E-value=4.7e-07 Score=92.57 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=44.6
Q ss_pred hHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 012927 229 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 284 (453)
Q Consensus 229 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg 284 (453)
.+.++|.|-..+....+|+||| +|+.+|++..+..+..++|..........-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999999 6799999999999999999876655444333
No 49
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.91 E-value=5.2e-07 Score=87.27 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=151.4
Q ss_pred cchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHh
Q 012927 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 106 (453)
|-|..|.+..+..+++|+|++.+|....+.+ --|-+..++.+........+..+..++. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~-------p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF-------PGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 4577899999999999999999999976553 1222333333444444444444443332 3459999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHHHHHH
Q 012927 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAVMSFA 185 (453)
Q Consensus 107 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 185 (453)
||+.+.+..+...+..+......+...++.++...- .+.+.+.+... ++.......+.++.+...+.+-....+.
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----PETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888888888888776431 11334443333 3333344455666666544433333222
Q ss_pred HHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHH
Q 012927 186 YSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSI 265 (453)
Q Consensus 186 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~ 265 (453)
..+.+. . -..++. ++++..+.. ..+..+...+.....+.|.+...+.-+...+|+| ++.+|....+.
T Consensus 149 ~~~~i~---~-~~~~~~----~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~ 215 (320)
T PF03845_consen 149 LLLLIL---L-LSIPNI----DWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAI 215 (320)
T ss_pred HHHHHH---H-HhcccC----CHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHH
Confidence 111111 1 111111 111111111 1234456667777778888888888899999987 78899999999
Q ss_pred HHHHHHHHHHHhHHhhhcCCC
Q 012927 266 ITTTIFYLFCGGFGYAAFGDN 286 (453)
Q Consensus 266 ~~~~~~y~~~g~~gy~~fg~~ 286 (453)
.++.++|...-+.....||.+
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 999999998888888888864
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.86 E-value=2.2e-08 Score=85.88 Aligned_cols=212 Identities=14% Similarity=0.256 Sum_probs=131.7
Q ss_pred hHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccC-------------CCCC------
Q 012927 29 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG-------------PDPE------ 89 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~-------------~~~~------ 89 (453)
|-......++|-++|+|-|++|.+|+.+||.+++.++.+.+++++.+..+++++... .+.+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 444567788999999999999999999999999999999999999999999885410 0000
Q ss_pred -------------------------CCC------CccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhh
Q 012927 90 -------------------------YGP------GRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 138 (453)
Q Consensus 90 -------------------------~g~------~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 138 (453)
.|. -++...+|++...|.|.+-.+.-+++++++||-..+|....-....
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 000 0223567888888999999999999999999999999765544433
Q ss_pred cc------------cccc-------ccc-------ccchhHHHHHHHH-HHhhcCCCCCchhhHHHHHHHHHHHHHHHHH
Q 012927 139 EG------------HEAA-------CEY-------SDTYYMLIFGAVQ-LILSQAPDFHNIQSLSVIAAVMSFAYSFIGF 191 (453)
Q Consensus 139 ~~------------~~~~-------~~~-------~~~~~~~i~~~i~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 191 (453)
+. -.++ ||. ..|++++++.+++ +|+.+ -++++-+.+.++-..+-..-....+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchh
Confidence 21 0011 332 2345666665544 46653 3444444444433333221111111
Q ss_pred HHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCC
Q 012927 192 GLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 249 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 249 (453)
.+.-.+.-++. . ...|+ ...+-++-..++...|+|.+|...|.....++.
T Consensus 252 ~l~tmqaeeda----a-~a~p~---arc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 252 SLATMQAEEDA----A-AAHPP---ARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhhhhcccc----c-ccCCc---cccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 11111111111 1 11121 112223345678889999999999998887764
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.82 E-value=4.5e-08 Score=100.17 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=145.1
Q ss_pred HhhhhchhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHH
Q 012927 38 ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (453)
Q Consensus 38 ~~~~iG~GiL~-LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~ 116 (453)
+.+++|+|++. .+.+..++|....++..++.+++...++.-+.|..++. |..| .+.+.+++.+|+..+..+.+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~-p~~G-----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF-PSAG-----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh-cccc-----chhhhhhhccCCcCCceeeH
Confidence 56788888876 57788999987788888899999888888888877653 3334 56667788999998888888
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhcccccccccccchh----HHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 012927 117 FVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYY----MLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFG 192 (453)
Q Consensus 117 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~----~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 192 (453)
...+.............+..++.....+.......| ..++.+++.. ......|....+...-....+...+..++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-l~~~gv~~~~~~~~~~~~i~~~~li~~ii 159 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITL-LNLFGVRVSGKIEFILTIIKLIALIAFII 159 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhh-hhhhhhhccchHHHHHHHHhhhHhhhhhh
Confidence 877777777666666666666554111111111122 2222222222 22223333333222211111111111111
Q ss_pred HH-HHHHHhCCcccc-----ccc---ccccc---chhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHH
Q 012927 193 LG-VAKVIGNGFVMG-----SFS---GVSTT---TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKA 260 (453)
Q Consensus 193 ~~-~~~~~~~~~~~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 260 (453)
.. +.....+++.+. +.. .+++. .+...+.+++.++...+++|.+-......-+|.||| +|+.+|+
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra 236 (478)
T PF00324_consen 160 VGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRA 236 (478)
T ss_pred hcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhH
Confidence 11 111111111111 000 11110 011224668899999999999999999999999999 6899999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCC
Q 012927 261 STMSIITTTIFYLFCGGFGYAAFGDN 286 (453)
Q Consensus 261 ~~~a~~~~~~~y~~~g~~gy~~fg~~ 286 (453)
...++....++|.......-...+.+
T Consensus 237 ~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 237 TLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhhhhhhhcccccCcc
Confidence 99999999999998777655555543
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.77 E-value=8.3e-06 Score=81.17 Aligned_cols=362 Identities=13% Similarity=0.083 Sum_probs=217.0
Q ss_pred cccchHHHHHHHHHhhhhchhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
+|+.....-.+.-+...||+|.+ +.-.+.+++|-...++..++++.+.+..+.-|.|..-.. |..| +|...+.
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~-P~sG-----sF~~ya~ 116 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY-PVSG-----SFSTYAT 116 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-----chhhhhh
Confidence 46667777888889999999986 588999999999999999999999999999999976553 3333 6888888
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHh--hcCCCCCchh-hHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLIL--SQAPDFHNIQ-SLSVIAA 180 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~-~~s~~~~ 180 (453)
+..++..+........+.-.-++..-++..+..++...+.. .+...|..++.++++.+ .-.|..-+.. ++|.+=+
T Consensus 117 rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~--v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV 194 (541)
T COG0833 117 RFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT--VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKV 194 (541)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC--CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHH
Confidence 88888888888888888888888888888888887765322 34557777777666544 3455554444 5555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccc-ccc-cccch-hhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhH
Q 012927 181 VMSFAYSFIGFGLGVAKVIGNGFVMGSF-SGV-STTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 257 (453)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 257 (453)
+.++.+.++.+ .+ ...+.+.++.. ..+ .+... ...+.++...+-+..|||.|...+--...|-+|| +|..
T Consensus 195 ~~ii~Fii~gi--i~--~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~i 267 (541)
T COG0833 195 LTIIGFIILGI--II--ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSI 267 (541)
T ss_pred HHHHHHHHHHH--HH--hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhh
Confidence 54444332222 11 11111111110 000 11111 2235678888999999999999999999999999 5789
Q ss_pred HHHHHHHHHHHHHHHHHHHh-HHhhh-cCCC----------ccccccccccccCChhHHHHHHHHHHHHHHhhhcccccc
Q 012927 258 KKASTMSIITTTIFYLFCGG-FGYAA-FGDN----------TPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 325 (453)
Q Consensus 258 ~~~~~~a~~~~~~~y~~~g~-~gy~~-fg~~----------~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p 325 (453)
+|++.-...=..++|+..-+ +|... |.|. ..++....++..+-..+..+.|..++++++.+----++.
T Consensus 268 PkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYa 347 (541)
T COG0833 268 PKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYA 347 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchH
Confidence 99999888888888874333 33333 3231 112333333211222355666766666666655333333
Q ss_pred hHHHHHHHHHhh-cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcC--ChHHHHHHhhhhhcchhhh
Q 012927 326 IFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP--YFNQVLGVIGGVIFWPLTI 402 (453)
Q Consensus 326 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp--~~~~v~~l~Ga~~~~~l~~ 402 (453)
.-+.+-.+-..+ -|+ ..++-.+...| ...+.+..++-+++++.+..-. -+.-++++.|... .++.
T Consensus 348 sSR~L~sLA~~g~APk--~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W 415 (541)
T COG0833 348 SSRMLYSLAKQGKAPK--IFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAW 415 (541)
T ss_pred HHHHHHHHHhcCCCch--HHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHH
Confidence 333443333221 111 00100001112 2333344444455555555422 2556666666544 3444
Q ss_pred hhhHHHHHHhh
Q 012927 403 YFPVEMYFKQM 413 (453)
Q Consensus 403 ilP~l~~~~~~ 413 (453)
+-=++.|++-|
T Consensus 416 ~~I~~shirFR 426 (541)
T COG0833 416 GSICLSHIRFR 426 (541)
T ss_pred HHHHHHHHHHH
Confidence 43455566543
No 53
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.45 E-value=2.1e-06 Score=87.76 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=175.7
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHH-HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCC-CCCccccHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSL-AWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEY-GPGRNRSYLEA 101 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~L-P~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~-g~~~~~~y~~~ 101 (453)
-+|+.+.+.-.+.-+.+++|+|++-. ..+.++.|-..-++-.++.+...+.+..-+.|..-+ -|.. | ++...
T Consensus 28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~~aG-----s~~~y 101 (554)
T KOG1286|consen 28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPVSAG-----SFYTY 101 (554)
T ss_pred hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-cccccc-----cceee
Confidence 35677888878888999999999874 788999998888888888888899999999986654 3442 3 23333
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccc------ccccccccchhHHHHHH--HHHHhhcCCCCCchh
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGH------EAACEYSDTYYMLIFGA--VQLILSQAPDFHNIQ 173 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~------~~~~~~~~~~~~~i~~~--i~~pl~~~~~l~~l~ 173 (453)
++...|+..+.++..-..+...-.+.+-+...+..++... ......+...|..++.+ +++.+...+-.-..+
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 4667788888888887777777777777777777777643 00011122233322221 122222233222222
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcccc-cccccc---ccch-h-hHHHHHHHHHhhHhhccccchhHHhHHhh
Q 012927 174 SLSVIA-AVMSFAYSFIGFGLGVAKVIGNGFVMG-SFSGVS---TTTS-I-EKMWLVAQALGDIAFAYPYSLILIEIQDT 246 (453)
Q Consensus 174 ~~s~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~---~~~~-~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 246 (453)
+....- ++..+-+.++. ..+.- .+.+.+. ++.+.. ++.. . ..+.++.+.+.+..|+|.|-..+-..-+|
T Consensus 182 f~~~~~kvl~~v~~~Il~--iVi~~--G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILA--IVIIA--GGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred ehHHHHHHHHHHHHHHhh--eeeec--CCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 222211 11111111111 11110 1111110 111111 1000 1 11456789999999999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-h-cCCC-ccccccccccc---cCChhHH---HHHHHHHHHHHHh
Q 012927 247 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA-A-FGDN-TPGNLLTGFGF---YEPYWLI---DLANAFIVIHLVG 317 (453)
Q Consensus 247 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~-~-fg~~-~~~~il~~~~~---~~~~~l~---~~~~~~~~i~~~~ 317 (453)
-||| +|+.++++..++.....+|....+.--+ . |.|. ..++....-+. .+..+.. .+.++..++.++.
T Consensus 258 ~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 258 AKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred ccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 9999 5899999999999999999987764333 2 3221 22222111000 0112222 3777777777777
Q ss_pred hhcccccchHHHHHHHH
Q 012927 318 GYQVYSQPIFAHFEKWI 334 (453)
Q Consensus 318 s~pl~~~p~~~~~~~~~ 334 (453)
+--.-+++.-+.+..+.
T Consensus 335 ~~n~~~y~~sR~l~amA 351 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALA 351 (554)
T ss_pred HHHHHhHHhHHHHHHHH
Confidence 77666676655555543
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.35 E-value=4.1e-05 Score=76.20 Aligned_cols=116 Identities=10% Similarity=0.017 Sum_probs=73.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-cc--cccccccchhh-HHHHHHHHHhhHhhccccchhHHhHH
Q 012927 169 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVM-GS--FSGVSTTTSIE-KMWLVAQALGDIAFAYPYSLILIEIQ 244 (453)
Q Consensus 169 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~ 244 (453)
.|.+++++.+++...+...++.++......-++.+.. ++ +..+.+.+..+ .-|.+..++-.-++.+.|-.....+.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a 275 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA 275 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence 3677777777777666544433333321111111111 11 11122223333 45777788888999999999999999
Q ss_pred hhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 012927 245 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 287 (453)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 287 (453)
+|-||+ +++-+|++..+..+..++=..+-+.-..+-+|+.
T Consensus 276 EE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 276 EETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred HHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 999997 5789999998888888776666665566666543
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.33 E-value=0.0006 Score=63.81 Aligned_cols=136 Identities=16% Similarity=0.128 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhhhchhhhH---HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHh
Q 012927 30 LWTAVAHIITGVIGSGVLS---LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (453)
Q Consensus 30 ~~~a~~~l~~~~iG~GiL~---LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~ 106 (453)
..+-.+..+.+++|+|.=+ +=.-|..-|+- |+...++.+++-..++..+.+..++. +..+|.|.-++.+
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-------~a~~y~~~~~~v~ 76 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-------NATSYREILKYVS 76 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHh
Confidence 4455677778999999765 22233344543 66666677777777777777766543 4579999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHH
Q 012927 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 177 (453)
Q Consensus 107 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (453)
||+...+.|+.+.+..++.+..-+...|+.+.|-.+.|.| .-.+++.+++..+.++++.+.+..+..
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~w----iGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYW----IGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHH----HHHHHHHHHHHHHHHHhcccceeeehe
Confidence 9999999999999999999999999999888886654421 112334444444555666666555443
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.31 E-value=0.00047 Score=69.82 Aligned_cols=184 Identities=14% Similarity=0.037 Sum_probs=104.4
Q ss_pred ccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc-c---cc------cchhHHHHHHHHHHhhc
Q 012927 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC-E---YS------DTYYMLIFGAVQLILSQ 165 (453)
Q Consensus 96 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~---~~------~~~~~~i~~~i~~pl~~ 165 (453)
.++.-+.|..||.+|..+..+...+...|-........++.+........ . .. ...+.+++..+.+++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999988765432110 0 01 11223344445555444
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHh-hccccchhHHhHH
Q 012927 166 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEIQ 244 (453)
Q Consensus 166 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~ 244 (453)
..-.+..+.....+....+... ...++...+...........+..++....+.+..++...+ +.-..-.+.+...
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dys 231 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFAAF----GMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFT 231 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence 4444544555555554332211 1111111111100000000110111222344444444422 2223556889999
Q ss_pred hhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhh----cCCCc
Q 012927 245 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 287 (453)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fg~~~ 287 (453)
+.+|++ ++-.+....++....+....+|+.+-.. +|+..
T Consensus 232 Ry~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 232 RFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999986 5566667777777888878887777665 77653
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.18 E-value=0.0013 Score=67.09 Aligned_cols=228 Identities=8% Similarity=0.007 Sum_probs=114.1
Q ss_pred ccccHHHHHHHHhccccchhhHHHHH-HHHHhHHHHHHHHhhhhhhccccc--------c-----cccccchhH--HHHH
Q 012927 94 RNRSYLEAVDMCLGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMREGHEA--------A-----CEYSDTYYM--LIFG 157 (453)
Q Consensus 94 ~~~~y~~~~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~--------~-----~~~~~~~~~--~i~~ 157 (453)
...++.-+.|..||++|..+..+... +..++-........++.+...... + .+.+...++ +++.
T Consensus 87 ~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 87 YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 33699999999999999888888774 566777777777777766632210 0 011111222 2333
Q ss_pred HHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccc--ccchhhHHHHHHHHHhhHhhccc
Q 012927 158 AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS--TTTSIEKMWLVAQALGDIAFAYP 235 (453)
Q Consensus 158 ~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~ 235 (453)
++..+.. ....+.++++...+....++..+......+.+. + ........+ ..+.....+.+..++...+=++.
T Consensus 167 ~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~ 241 (484)
T PRK11375 167 LVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--G--IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWA 241 (484)
T ss_pred HHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C--CchhhccCcccccCCcchHHHHHHHHHHHHHHHH
Confidence 4444554 445667777777666655433332222333222 1 110000001 00111123334344433332333
Q ss_pred -cchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHH----hhhcCCCcc--ccccccccccCChhHHHHHH
Q 012927 236 -YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG----YAAFGDNTP--GNLLTGFGFYEPYWLIDLAN 308 (453)
Q Consensus 236 -~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fg~~~~--~~il~~~~~~~~~~l~~~~~ 308 (453)
.-.+.+...+..|++ |+-.+....+..+...+...+|+.. ...||+... .+++.++. +.....++-
T Consensus 242 ~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~---~~~~~~~a~ 314 (484)
T PRK11375 242 APAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD---SLFASFFAV 314 (484)
T ss_pred HHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc---chHHHHHHH
Confidence 344788888888876 5566666666666666655444433 345555432 23333331 233333444
Q ss_pred HHHHHHHHhhh-cccccchHHHHHHH
Q 012927 309 AFIVIHLVGGY-QVYSQPIFAHFEKW 333 (453)
Q Consensus 309 ~~~~i~~~~s~-pl~~~p~~~~~~~~ 333 (453)
+.+.++.+.+- .....+.-..+.+.
T Consensus 315 l~~v~a~~~tN~~~N~ys~~~~l~~l 340 (484)
T PRK11375 315 LVILMTTISTNATGNIIPAGYQIAAL 340 (484)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHh
Confidence 44455554442 23445544444444
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.15 E-value=0.012 Score=60.30 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=88.1
Q ss_pred cccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHH--HHHHHH-HHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAM--VIFASV-TLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~l--i~~~~~-~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
.|+-+++...+.+..+.+|+ ..++.|-...+-|+....... .....+ ..+-+..+.+..++. +..|.+|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~e 112 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-------NAVTLND 112 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccHHH
Confidence 56667777888887776665 566677766667763211110 111111 111122222222321 5689999
Q ss_pred HHHHHhcccc-chhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 012927 101 AVDMCLGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 101 ~~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (453)
.-++.||++. +.+..+...+..+..+...+...+..++...+. +....+++..++........-++...+...+-
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi----~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ 188 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI----SYETGLLIFGITVALYTAFGGFRAVVLTDALQ 188 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999764 556666666666677777788888888776642 23344455555556666777777777666655
Q ss_pred HHHHH
Q 012927 180 AVMSF 184 (453)
Q Consensus 180 ~~~~~ 184 (453)
.+..+
T Consensus 189 ~~i~~ 193 (483)
T PRK09442 189 GIVML 193 (483)
T ss_pred HHHHH
Confidence 54433
No 59
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.06 E-value=0.001 Score=66.63 Aligned_cols=148 Identities=12% Similarity=0.093 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+.. ....+............+.+-.++. +..|.+|.-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~e~~~ 76 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS-------GAVTIPEYLE 76 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT-------T--SHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc-------chhhhhhhhh
Confidence 35667777888887777776 5667888888888753 3333333333333344444433322 5689999999
Q ss_pred HHhcccc--chhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 104 MCLGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 104 ~~~G~~~--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
+.||++. +.+..+..++..+......+...+..++...+. +....+++..++........-++...+...+-.+
T Consensus 77 ~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi----~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 77 KRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI----PYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch----hhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 9999998 666666666777777778888888887766542 2334445555555566677777777766665555
Q ss_pred HHH
Q 012927 182 MSF 184 (453)
Q Consensus 182 ~~~ 184 (453)
..+
T Consensus 153 i~~ 155 (406)
T PF00474_consen 153 IMI 155 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.04 E-value=0.0045 Score=61.39 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=110.9
Q ss_pred cHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHH
Q 012927 97 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 176 (453)
Q Consensus 97 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (453)
+=-.++|..||.++.++..+.+.+.+.|-.....+..++...+.. +.+...++++.++++....... .|.++.++
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~----~~~~~~~ili~g~l~~l~~ifG-~r~l~~l~ 156 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGT----GLPVWAGILIIGVLMTLVTIFG-YRALHKLE 156 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCC----CCcHHHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 555678999999999999999999999999999999998733332 2233345555554444333221 24444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-ccccccccccccchhhHHHHHHHHHhhHh-hccccchhHHhHHhhhCCCCCch
Q 012927 177 VIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEIQDTLKSPPPAN 254 (453)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~~ 254 (453)
..++...+.. ....++...+.. ..+... .+.++. ..++..+++..+ +--..-.......+.+|+| +.
T Consensus 157 ~~a~~~~~~l----f~~l~~~~~~~~~~~~~~~--~~~~~~---~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~--t~ 225 (442)
T COG1457 157 RIAVPLLLLL----FLYLLALLFRSKGGLDALW--VKGPTS---PLSFLSALSLVIGSFASWGPYAADYSRYAPSP--TP 225 (442)
T ss_pred HHHHHHHHHH----HHHHHHHHHhcccccceee--ccCCCc---chhHHHHHHHHHHHHHhhhhhhhhhhhhcCCC--ch
Confidence 4444433321 122223333311 111111 010111 122222222221 1222456778888888876 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCc-cccccccccccCChhHHHHHHHHHHHHHHhhhcccccc
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 325 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p 325 (453)
++.-.....+.......-++.|.+...+-|+.. .......+. + +...+-+...++...+--...++
T Consensus 226 ~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~--~g~~~~lil~l~~~ttN~~nlYs 292 (442)
T COG1457 226 SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G--FGLPAILILVLGTVTTNANNLYS 292 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c--HHHHHHHHHHHHHHhcCcHHHHH
Confidence 244445556667777777788888888887766 333333332 1 34444444444444444333333
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.93 E-value=0.034 Score=56.86 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHhhhhchhh-hHHHHHHHHhChhHHHHHHH--HHHHHH-HHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMV--IFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~v~gii~li--~~~~~~-~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
.|+-+++.....+..+.+|++. ++.|-...+-|+........ ..+.+. ..-...+.+..++. +..|.+|
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~e 111 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-------NAITIND 111 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccHHH
Confidence 5677888888888888887765 45777777777632111110 011110 00111122222222 5689999
Q ss_pred HHHHHhcccc-chhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHH
Q 012927 101 AVDMCLGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIA 179 (453)
Q Consensus 101 ~~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 179 (453)
.-++.||++. +++..+...+..++...+.+...+..++...+. +....+++..++........-++...+...+-
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi----~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ 187 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL----SYLTALFIFSSSVLIYTTFGGFRAVALTDAIQ 187 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999665 577788888888888888888888888776643 23334444455555556666677777666665
Q ss_pred HHHHH
Q 012927 180 AVMSF 184 (453)
Q Consensus 180 ~~~~~ 184 (453)
.+..+
T Consensus 188 ~~v~~ 192 (471)
T TIGR02119 188 GIVMF 192 (471)
T ss_pred HHHHH
Confidence 54433
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.93 E-value=0.014 Score=57.93 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=102.5
Q ss_pred ccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccc-cccccchhHHHHHHHHHHhhcCCCCCchhh
Q 012927 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAA-CEYSDTYYMLIFGAVQLILSQAPDFHNIQS 174 (453)
Q Consensus 96 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 174 (453)
.++.-++|..||++|..+..+...+...|--.......++.+....+.. ...+...+..++.++..+... ...+.+++
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~ 136 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVW 136 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5999999999999999999999999999999999999999888654321 111122334444444444443 33466667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHh-hccccchhHHhHHhhhCCCCCc
Q 012927 175 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEIQDTLKSPPPA 253 (453)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~ 253 (453)
+...+........+....... .+....... ..+ .+ . .+..++.... +.-......+...+..|+|
T Consensus 137 ~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~-~~~--~~-~---s~~~~~~~~~~~~~swa~~~~DysRy~k~~--- 202 (386)
T TIGR02358 137 LNNWSVWLLLIATLWLLVVVF----SKADLSELW-NRA--GD-M---SFAVAVELVIAMPLSWLPLIADYTRFARNP--- 202 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hccchhhhc-CCC--CC-c---cHHHHHHHHHHHHHHHHHHccchhhhcCCC---
Confidence 766666554432222111111 111111111 111 11 1 1111221111 1012234478888888765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 012927 254 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 286 (453)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~ 286 (453)
|+..+....+..+...+...+|.......++.
T Consensus 203 -~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 203 -RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred -cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67777888888888888888888777766653
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.90 E-value=0.01 Score=59.39 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=90.6
Q ss_pred ccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
|+-+++...+.+..+.+|+ ..++.|....+-|+. +....+...........+..+..++. +..|.+|.-++
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~e~l~~ 74 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN-------GAYTMPEYLEK 74 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCchhHHHHH
Confidence 4556667777776666655 456678877777853 22222222222233334444443321 56899999999
Q ss_pred Hhccc-cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHH
Q 012927 105 CLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMS 183 (453)
Q Consensus 105 ~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 183 (453)
-||++ .+.+..+...+..+......+...+..++...+.+ ....+++..+++.......-++...+...+-.+..
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~----~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~ 150 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLD----LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIM 150 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 99984 66666677778888888888888888888766432 22334444445555556666676666666655443
Q ss_pred H
Q 012927 184 F 184 (453)
Q Consensus 184 ~ 184 (453)
+
T Consensus 151 ~ 151 (407)
T TIGR00813 151 I 151 (407)
T ss_pred H
Confidence 3
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.84 E-value=0.05 Score=55.80 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=77.0
Q ss_pred cccchHHHHHHHHHhhhhc-hhhhHHHHHHHHhChhHHHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 25 KRTGTLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMV---IFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~v~gii~li---~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
.|+-..+-......-+.++ .-.+++|-...+.|+...-+... ...+.-.+-...+.+..++. +..|.+|
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~-------~~~T~~d 109 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKAR-------GATTIPD 109 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCccHHH
Confidence 3444444566666555555 88899999999999764333332 22233333333444433221 6789999
Q ss_pred HHHHHhc-cccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc
Q 012927 101 AVDMCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE 142 (453)
Q Consensus 101 ~~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 142 (453)
.-++-|| ++.+.+..+...+..+.-+...+...++.++...+
T Consensus 110 ~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 110 FLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999999 88889999999999999999999999998855443
No 65
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.82 E-value=0.00082 Score=64.21 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCCCCccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHH--HHHHHHHHHcccCC
Q 012927 9 NHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT--LFATFLLCDCHRGP 86 (453)
Q Consensus 9 ~~~~pl~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~--~~s~~~l~~~~~~~ 86 (453)
|++++...++.+|+.+.-..+-+.-+-|=+.++-|+|.+.=|-.-.+-||+++.++.++-+++. .+-...+.-+.|+
T Consensus 33 d~~~~TPA~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~- 111 (376)
T PF02554_consen 33 DDSRPTPAHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH- 111 (376)
T ss_pred CCCCCCCeeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC-
Confidence 4445555666677777777788889999999999999999999999999999999988777663 2333333334333
Q ss_pred CCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcC
Q 012927 87 DPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQA 166 (453)
Q Consensus 87 ~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 166 (453)
+| .+.+|++++..||+++.+..+...+.+.....++....++.+.+.- +.....++.+...+.+-....
T Consensus 112 ---~G----~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p----~~~~~~~~~I~~Ai~~G~~~y 180 (376)
T PF02554_consen 112 ---KG----KSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSP----WAATSSLLFIPIAILFGLLVY 180 (376)
T ss_pred ---CC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh----hHHHHHHHHHHHHHHHhHhhe
Confidence 24 5999999999999999999999999999999999988888776522 122223444444444444433
Q ss_pred CCCCchhhHHHHHHHHH
Q 012927 167 PDFHNIQSLSVIAAVMS 183 (453)
Q Consensus 167 ~~l~~l~~~s~~~~~~~ 183 (453)
|+=-++...+.++++..
T Consensus 181 ~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 181 KRGGNLGPATIIGVVLL 197 (376)
T ss_pred ecCCchHhhHHHHHHHH
Confidence 43334556666666543
No 66
>PRK12488 acetate permease; Provisional
Probab=97.66 E-value=0.11 Score=54.29 Aligned_cols=147 Identities=15% Similarity=0.081 Sum_probs=91.9
Q ss_pred cccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFA-TFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s-~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
.|+-+++...+.+..+.++++ .++.|-...+.|+-. . .......+.+.- ..++.+-.++. +..|.+|.-
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~-~~~~g~~~g~~~~~~~~a~~lr~~-------g~~T~~d~l 136 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-L-LYALGVLAGWPIILFLIAERLRNL-------GKYTFADVV 136 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-H-HHHHHHHHHHHHHHHHHHHHHHHC-------CCcchHHHH
Confidence 467778888888888877766 477898887888642 1 111111112111 22233322221 458999999
Q ss_pred HHHhc-cccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
++-|| |+.+.+..+...+..+.-....+...+..++...+. +...-+++..++........-++...+...+-.+
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi----~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI----SYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 99998 457788877777777777788888888887776542 2233344555555556666677776666666554
Q ss_pred HHH
Q 012927 182 MSF 184 (453)
Q Consensus 182 ~~~ 184 (453)
..+
T Consensus 213 im~ 215 (549)
T PRK12488 213 LLL 215 (549)
T ss_pred HHH
Confidence 443
No 67
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.59 E-value=0.089 Score=51.75 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=44.8
Q ss_pred HHHHhhhhchhhhHHHHH-HHHhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccc
Q 012927 35 AHIITGVIGSGVLSLAWS-MAQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 111 (453)
Q Consensus 35 ~~l~~~~iG~GiL~LP~a-f~~~G--~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~ 111 (453)
+.++.-.+|+|.|-.|-. -+++| |..+.+..++.++..-..... . .++.| -+|.++.++. ||+..
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----a---v~~~g----G~~~~l~~~~-g~~f~ 69 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----A---LALVG----GGYDSLSARI-GKVFG 69 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----e---eeecC----CCHHHHHHHh-ChHHH
Confidence 346677899999999766 44565 566777776666655444433 1 11222 3788777766 66666
Q ss_pred hhhHHHHH
Q 012927 112 WACSFFVH 119 (453)
Q Consensus 112 ~~~~~~~~ 119 (453)
.+..+.+.
T Consensus 70 ~lf~~~~~ 77 (378)
T TIGR00796 70 ILFTVILY 77 (378)
T ss_pred HHHHHHHH
Confidence 55544443
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=97.56 E-value=0.071 Score=53.28 Aligned_cols=174 Identities=12% Similarity=0.070 Sum_probs=91.1
Q ss_pred cccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhh
Q 012927 95 NRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 174 (453)
Q Consensus 95 ~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 174 (453)
..++.-++|..||.+|..+..+...+...+-........++.+.+..+. +...+.+++.++..+..... .+.+++
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~----~~~~~~~i~~~l~~~~~~~G-~~~i~~ 144 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL----DINLLIVLSGLLMTVTAYFG-ISALTI 144 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3699999999999999999988888888887777777777666554332 22234555555544444332 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhc-cccchhHHhHHhhhCCCCCc
Q 012927 175 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFA-YPYSLILIEIQDTLKSPPPA 253 (453)
Q Consensus 175 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~ 253 (453)
+...+........+. .......+....+.....++.+ . ..+..++...+=. ...-.+.+...+..|++
T Consensus 145 ~~~~~~p~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~--- 213 (404)
T PRK11017 145 LSRIAVPAIALLGGY----SVWLAVNDVGGLDGLKAIVPAE-P---LDFSAALTLVVGSFISGGTLTADFVRFGRSA--- 213 (404)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHhccCchhhhhcCCCCC-c---ccHHHHHHHHHHHHHHhHhcCCChHhhccCc---
Confidence 554444433321111 1111111110000111111111 1 1222222221111 23456777888887765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 012927 254 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 285 (453)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~ 285 (453)
|+-......++.+...+...+|.......|+
T Consensus 214 -~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 214 -KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred -cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444555566666666666777666666665
No 69
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.20 E-value=0.31 Score=49.17 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHH--HHhhcCCCCCchh
Q 012927 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQ--LILSQAPDFHNIQ 173 (453)
Q Consensus 96 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~~l~~l~ 173 (453)
.+..|+.++.+||+..++..+...+.+.+....-....+.-++...+ .+..+.+++..+.. +.....++.+.+.
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g----ip~~~~v~i~~~~~~~~l~l~~~~y~~~E 169 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG----IPLLQGALITALDTFLILMLQRRGFRPLE 169 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 48999999999999888777777777777777766666655554433 22223333333222 2212344566666
Q ss_pred hHH
Q 012927 174 SLS 176 (453)
Q Consensus 174 ~~s 176 (453)
.+.
T Consensus 170 ~i~ 172 (439)
T PRK00701 170 AII 172 (439)
T ss_pred HHH
Confidence 664
No 70
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.20 E-value=0.21 Score=49.68 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=81.7
Q ss_pred ccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccH-----H
Q 012927 26 RTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSY-----L 99 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y-----~ 99 (453)
++.|.+|+++..+.+.+|+| ++++|-+...+| ..+++++.+.+++..-+.+.-.-...+...++ +..+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~---~~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERD---ADGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeC---CCCCEecChHH
Confidence 45789999999999999998 999999987777 66777777777665544433332221111111 11224 5
Q ss_pred HHHHHHhccccchhhHHHHHHHHHh-HHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 100 EAVDMCLGKTNAWACSFFVHVGLYG-TAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 100 ~~~~~~~G~~~~~~~~~~~~~~~~g-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
++-+...|||.+.+..+. ++..++ .........++.+++..+ . .++.+.+..+++........+|.+..++-.
T Consensus 121 yi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~----~-~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~ 194 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN----V-PKLVTGIVLTVLTALIIFGGLKRIAKISSV 194 (425)
T ss_pred HHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----C-cHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 666666667655555555 333333 223333344444443221 1 122333333333344445566777766655
Q ss_pred HHHH
Q 012927 179 AAVM 182 (453)
Q Consensus 179 ~~~~ 182 (453)
.+..
T Consensus 195 lvP~ 198 (425)
T TIGR00835 195 VVPF 198 (425)
T ss_pred HHHH
Confidence 5443
No 71
>PRK15015 carbon starvation protein A; Provisional
Probab=97.11 E-value=0.007 Score=61.94 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=92.9
Q ss_pred CCCCCCCCCCCCCCccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHH--HHHHHHHHHcccCCC
Q 012927 10 HETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT--LFATFLLCDCHRGPD 87 (453)
Q Consensus 10 ~~~pl~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~--~~s~~~l~~~~~~~~ 87 (453)
++++...++.+|+.+.-.++-+.-+-|=+.++-|+|.+-=|..-.+.||.++.++.++-+++. .+-...|.-+.|+
T Consensus 65 ~~r~TPA~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~-- 142 (701)
T PRK15015 65 PTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR-- 142 (701)
T ss_pred CCCCCCceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC--
Confidence 344444556666666666666677888999999999999999999999999999998777652 2333333334343
Q ss_pred CCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhh
Q 012927 88 PEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 138 (453)
Q Consensus 88 ~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 138 (453)
+| .|.+|++++..|++++.+..+.+++.+.....++...+.+.+.
T Consensus 143 --~G----rSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 143 --DG----RSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred --CC----ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34 5999999999999999999998888888888888887777765
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.96 E-value=0.58 Score=48.08 Aligned_cols=151 Identities=7% Similarity=-0.033 Sum_probs=80.0
Q ss_pred cccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+-+++...+.+..+.+++. .++.|-...+.|+.. ....+...+........+.+-.++..++ +.+..|.+|.-+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~--~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEA--AHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHh--hcCCccHHHHHH
Confidence 567778788888877776654 566887767778743 2111111121222233333322211000 115689999999
Q ss_pred HHhccccchh---hHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 012927 104 MCLGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 104 ~~~G~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
+-||++.+.+ ..+...+.........+...+..++...+. +....+++..++...-....-++...+...+-.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi----~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~ 187 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL----DYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQG 187 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999765543 333333333334445555666666655542 222334444455555556666666666555544
Q ss_pred HH
Q 012927 181 VM 182 (453)
Q Consensus 181 ~~ 182 (453)
+.
T Consensus 188 ~i 189 (487)
T TIGR02121 188 LL 189 (487)
T ss_pred HH
Confidence 43
No 73
>PRK09395 actP acetate permease; Provisional
Probab=96.95 E-value=0.64 Score=48.53 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=85.1
Q ss_pred cccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+.+++...+.+..+.+|+ ..++.|-.....|+.. ....+...+.......++.+-.|+. +..|++|.-+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~-------g~~T~~d~l~ 139 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNL-------GKYTFADVAS 139 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhC-------CCccHHHHHH
Confidence 46677777777777776664 4567888777788743 1111111111111122333322221 4589999999
Q ss_pred HHhcc-ccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 104 MCLGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 104 ~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
+-||+ +.+.+..+...+..+......+...+..++...+ .+....+++..++...-....-++...+...+-.+
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99995 4677777766666666666777777777766554 22333444555555555666666666655554443
No 74
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.94 E-value=0.65 Score=48.44 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=85.1
Q ss_pred cccchHHHHHHHHHhhhhc-hhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~v~gii~li~~~~~~~-~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
.|+.+++...+.+..+.++ ...++.|-...+.|+-. ....+ ...+.+ ....++.+-.++. +..|.+|.-
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~-g~~~~~~i~~~~~a~~lrr~-------g~~T~~d~l 136 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSL-GFLVGWPIILFLIAERLRNL-------GRYTFADVA 136 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHH-HHHHHHHHHHHHHHHHHHHc-------CCccHHHHH
Confidence 4566677777777777665 56788888777778642 22111 111111 2223334432321 458999999
Q ss_pred HHHhccc-cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
++-||.+ .+.+..+...+..+.-....+...+..++...+. +...-+++..+++..-....-++...+...+-.+
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi----~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL----NYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999854 5666666666666666677777788777766543 2223344444555555556566665655555443
Q ss_pred H
Q 012927 182 M 182 (453)
Q Consensus 182 ~ 182 (453)
.
T Consensus 213 i 213 (549)
T TIGR02711 213 L 213 (549)
T ss_pred H
Confidence 3
No 75
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.79 E-value=0.021 Score=57.33 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCCCccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHH--HHHHHHHHcccCC
Q 012927 9 NHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTL--FATFLLCDCHRGP 86 (453)
Q Consensus 9 ~~~~pl~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~--~s~~~l~~~~~~~ 86 (453)
|++++..+++.+|+.+.-.++.+..+-|=+.++-|+|.+-=|.--+|-||.++.++.++-+++.- +-...+.-+.|+
T Consensus 33 dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~- 111 (575)
T COG1966 33 DPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH- 111 (575)
T ss_pred CCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc-
Confidence 55566667777888888788888899999999999999999999999999999999987777632 222222233333
Q ss_pred CCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhc
Q 012927 87 DPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRE 139 (453)
Q Consensus 87 ~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 139 (453)
.| .|.+|++++.+|++.+.+..+...+...-...++.....+.+.+
T Consensus 112 ---~G----~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 112 ---GG----KSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred ---CC----ccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34 49999999999999999999988888888777777777766553
No 76
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.78 E-value=0.027 Score=57.09 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=63.3
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQ--LGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~--~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~ 101 (453)
++|+.+.++-+..-+...+....+.+-..... .++.-+++..++..++...-..+..... +++| .++.-+
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G----~r~G----l~~~v~ 76 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG----PRTG----LPTMVL 76 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH----HCC-------HHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc----cccC----CCchhc
Confidence 45555555555555555555544444443322 2334444444444443333333332322 2334 588999
Q ss_pred HHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccc
Q 012927 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHE 142 (453)
Q Consensus 102 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 142 (453)
+|..||.+|..+..+...+...|-........++.+....+
T Consensus 77 sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~ 117 (440)
T PF02133_consen 77 SRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLG 117 (440)
T ss_dssp TTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999886543
No 77
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.84 Score=45.41 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=76.5
Q ss_pred cchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH
Q 012927 27 TGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 105 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~ 105 (453)
..+..+..+....+-+|.|-++--.. =++-|+-+ +..++...+..+-.+.+. +| ....+| .+..|..++.
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~l--l~vills~l~~~~~Q~~~--ar-LgivTG----~~laq~ir~~ 86 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSL--LWVILLSNLMAYILQELS--AR-LGIVTG----KGLAEAIRER 86 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHH--HH-HHHHhC----CcHHHHHHHH
Confidence 34555666666666667666654333 22344322 222222222222222111 11 011134 3899999999
Q ss_pred hccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHH
Q 012927 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 177 (453)
Q Consensus 106 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 177 (453)
++|+..++..+...+....+.++-.+..+--++-+...+ ..+-.++.++..+.....++.|.+..+..
T Consensus 87 y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip----~~~g~iItav~~~iil~~~~~r~~E~~v~ 154 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIP----LIIGAVITAVDVLIILLLKGYRLLERVVL 154 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999888887777655322 22233344443333333444555554443
No 78
>PRK10484 putative transporter; Provisional
Probab=96.31 E-value=1.7 Score=45.14 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=51.3
Q ss_pred cccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+-+++...+.+..+.++++ .++.|-...+.|+.... .....+.........+..-.++. +..|.+|.-+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~ 108 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKS-------GITTIPDFLE 108 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHH
Confidence 567778778888777766554 45678777777854311 11111111112222233222221 5689999999
Q ss_pred HHhccccchhhHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVG 121 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~ 121 (453)
+-||++.+.+......+.
T Consensus 109 ~Ryg~~~~~~~~~~~~i~ 126 (523)
T PRK10484 109 ERYDKTTRRIVSILFLIG 126 (523)
T ss_pred HhcCchhHHHHHHHHHHH
Confidence 999998877655544433
No 79
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.11 E-value=2.2 Score=44.60 Aligned_cols=144 Identities=10% Similarity=-0.033 Sum_probs=87.0
Q ss_pred cccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+-+++...+.+..+.+++ ..++.|-...+.|+-.-...+ ...........++.+-.|+. +..|..|.-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr~-------~~~T~~e~l~ 102 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRKF-------GKYTVPDFIG 102 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHC-------CCccHHHHHH
Confidence 57788888888888887755 567788777777764211111 11111112334444444432 5579999999
Q ss_pred HHhccc-cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHH
Q 012927 104 MCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 180 (453)
Q Consensus 104 ~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 180 (453)
+-||++ .+.+..+...+..+......+...+..++...+. +....+++..++...-....-++...+.-.+-.
T Consensus 103 ~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi----~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 103 DRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV----DFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred HHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999966 4677666666677776777777777777766542 222334444455555555656666655555443
No 80
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.01 E-value=1.7 Score=42.59 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=54.5
Q ss_pred ccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhc--CCCCCchh
Q 012927 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQ--APDFHNIQ 173 (453)
Q Consensus 96 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~ 173 (453)
.+..|..++.+||+..+...+...+.+......-+...+.-++.+.+ .+...+.++..+..+.+.. .++.|.+.
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g----~~~~~~~~~~~~~~~~ll~~~~~~y~~~E 117 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG----IPLWIWVLLVAVIAILLLWLSSGGYRRLE 117 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 48889999999999998888888888888877777777766655442 3344555555554444444 66667666
Q ss_pred hHHHHH
Q 012927 174 SLSVIA 179 (453)
Q Consensus 174 ~~s~~~ 179 (453)
.+...-
T Consensus 118 ~~~~~l 123 (358)
T PF01566_consen 118 RILKVL 123 (358)
T ss_pred HHHHHH
Confidence 655433
No 81
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.62 E-value=3.3 Score=42.77 Aligned_cols=150 Identities=7% Similarity=-0.043 Sum_probs=81.5
Q ss_pred cccchHHHHHHHHHhhhhchhh-hHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHH-cccCCCCCCCCCccccHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCD-CHRGPDPEYGPGRNRSYLEA 101 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~v~gii~li~~~~~~-~~s~~~l~~-~~~~~~~~~g~~~~~~y~~~ 101 (453)
.|+-+++...+.+..+.+++.. ++.|-...+.|+-. ....+...+. .....++.. .......+. +..|.+|.
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~---~~~T~~e~ 113 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHTEYNN---NALTLPDY 113 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeHHHH
Confidence 5677788888888777666655 55888877888643 1111111111 111122211 110000001 55799999
Q ss_pred HHHHhccccch---hhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 102 VDMCLGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 102 ~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
-++-||++.+. +..+...+....-+...+...+..++...+ .+....+++..++...-....-++...+.-.+
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~i 189 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYETALWAGAAATILYTFIGGFLAVSWTDTV 189 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999976544 334444444444445555556666665554 22334455555555666666666666666665
Q ss_pred HHHHH
Q 012927 179 AAVMS 183 (453)
Q Consensus 179 ~~~~~ 183 (453)
-.+..
T Consensus 190 Q~~im 194 (502)
T PRK15419 190 QASLM 194 (502)
T ss_pred HHHHH
Confidence 55443
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.35 E-value=3.4 Score=41.28 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred chHHHHHHHHHhhhhchhhhHHHHHHH-HhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 28 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
.......+.++.-..|+|=|-.|-..- ++| |..+.+.+++.++.--.-.. +-..+. | .++.+++++
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv--ia~~~~-----~----~~~~~l~~~ 71 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV--IAVAKS-----G----GGIEDLASR 71 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HHHhhc-----C----CCHHHHhcc
Confidence 344567788899999999999987754 455 88888888777765322221 111111 1 278888777
Q ss_pred Hhccccchh
Q 012927 105 CLGKTNAWA 113 (453)
Q Consensus 105 ~~G~~~~~~ 113 (453)
+ ||+...+
T Consensus 72 v-~~~f~~i 79 (427)
T PF05525_consen 72 V-GPKFALI 79 (427)
T ss_pred c-CcHHHHH
Confidence 6 4544433
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.58 E-value=5.6 Score=39.82 Aligned_cols=184 Identities=11% Similarity=-0.018 Sum_probs=102.1
Q ss_pred ccccHHHHHHHHhccc-cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCch
Q 012927 94 RNRSYLEAVDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 172 (453)
Q Consensus 94 ~~~~y~~~~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 172 (453)
.++|++|....-++.+ .|++..+..++..+.-.+..++..|..+..+.+.+ ...-+++..+++..-..+.-++..
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~----~~vgv~ig~ilm~~Yvv~GGM~at 177 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP----YHVGVVIGGILMMVYVVLGGMKAT 177 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC----ceeehhhHhHHHHHHHHhcchhhh
Confidence 4589999988888764 66777777777777778888888888888777533 223344445555555566677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccc---ccccc----cccchhhHHHHHHHHHhhHhhccccchhHHhHH
Q 012927 173 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMG---SFSGV----STTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ 244 (453)
Q Consensus 173 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 244 (453)
.+...+-.+..+...++..++...+.-.+. +... ..+.. .+.++-....+..+.++...--..+..-+|.+.
T Consensus 178 TW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil 257 (529)
T COG4147 178 TWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHIL 257 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEE
Confidence 777766554433332222223333322211 0000 00000 000110001122233333322233455555554
Q ss_pred hhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 245 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 245 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
-.-.. .++.|+-||.+.++..+...+|+..-+.|+.+
T Consensus 258 ~RFfT-vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 258 MRFFT-VPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred EEEEe-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 23668899999999999999999776666653
No 84
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.29 E-value=6.8 Score=39.60 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=90.3
Q ss_pred ccccHHHHHHHHhccccchh---hHHHHHHHHHhHHHHHHHHhhhhhh--------ccc--cc---ccccccchhHH--H
Q 012927 94 RNRSYLEAVDMCLGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMR--------EGH--EA---ACEYSDTYYML--I 155 (453)
Q Consensus 94 ~~~~y~~~~~~~~G~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~--------~~~--~~---~~~~~~~~~~~--i 155 (453)
....|+..+|..||-+|..+ ......+.-||.- .-..+..++ ..+ +. ..+.+...++. +
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 56799999999999988643 3334444344322 222222222 111 10 01122222222 2
Q ss_pred HHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccc
Q 012927 156 FGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP 235 (453)
Q Consensus 156 ~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 235 (453)
+-++. .++..+..++++++-..+..+....++-.++....+.... +...+.+. ...+.....|.+...+...+=.|.
T Consensus 178 fW~l~-~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~-~~~~~~p~-~~~~~~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 178 FWVLQ-LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGS-SILGELPA-GTVSGSNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHH-HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCc-CccccCCC-CCCCcchhHHHHHHHHHHHHHHHH
Confidence 22222 3334555666666666555554433322222222222111 11111110 011223334444444333322222
Q ss_pred -cchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHH----HhHHhhhcCCCc--ccccccccc
Q 012927 236 -YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC----GGFGYAAFGDNT--PGNLLTGFG 296 (453)
Q Consensus 236 -~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~----g~~gy~~fg~~~--~~~il~~~~ 296 (453)
..-|.|..-+.-|+| |+-.+--.++..+.+.+.-++ +..++..||+.. +.+++.++.
T Consensus 255 tl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 255 TLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 455788888888876 333333444555555555444 445777899984 457888875
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.95 E-value=1.2 Score=43.85 Aligned_cols=69 Identities=10% Similarity=0.179 Sum_probs=56.6
Q ss_pred ccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhc
Q 012927 94 RNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQ 165 (453)
Q Consensus 94 ~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 165 (453)
+..-..+++++.+|+.|+.+..+.+.+.|++++++.....+|...+.++ ..+.+.|+++..+....++.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~---k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP---KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999988765 25566677666665555553
No 86
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.80 E-value=8.1 Score=38.75 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=33.5
Q ss_pred chHHHHHHHHHhhhhchhhhHHHHHHH-HhC--hhHHHHHHHHHHHH
Q 012927 28 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASV 71 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~v~gii~li~~~~~ 71 (453)
...+...+.++.-..|+|=|-.|-..- ++| |..+.+.+++.++.
T Consensus 8 ~~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg 54 (439)
T PRK15433 8 RDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG 54 (439)
T ss_pred hHHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH
Confidence 356678889999999999999987754 566 77777777666654
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=93.22 E-value=0.44 Score=48.49 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=111.4
Q ss_pred hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHH
Q 012927 47 LSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTA 126 (453)
Q Consensus 47 L~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~ 126 (453)
|=++|...|+|+..+.+++.....++..|..-......+..-+.| . .|. +..+.+|+..+-.+.+...+.+--.|
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G--g--~yf-lis~slg~efggsigiIy~f~~aVa~ 125 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG--G--VYF-LISRSLGPEFGGSIGIIYAFANAVAT 125 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC--c--EEE-EEEecccccccchhHHHHHHHHHHHH
Confidence 447999999999999998888877777766544432222122223 1 222 22345577666666777777777888
Q ss_pred HHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC---c
Q 012927 127 IAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG---F 203 (453)
Q Consensus 127 ~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~---~ 203 (453)
..|.+..++.+.++.+......-.-.-.+..+++...+. -..++.+.+-++..++.+ +++.....+. +
T Consensus 126 am~~vgfaEsv~~l~~~~s~~~i~gi~~vt~~ill~i~~----ag~~w~~k~q~~ll~il~-----iai~~f~~gs~~~~ 196 (643)
T KOG2083|consen 126 AMYVVGFAESVAHLFETESKEMIDGIGSVTVLILLAINV----AGVEWEAKLQIVLLLILL-----IAIADFLVGSFFSP 196 (643)
T ss_pred HHhhhhHHHHHHHHHHhccHHHhcchhHHHHHHHHHhhh----ccchhHHHHHHHHHHHHH-----HHHHHhhhhhccCh
Confidence 999999999998765422111000111112222223332 223333333333222111 1111111110 0
Q ss_pred ---c----ccc---c-cc-ccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHH
Q 012927 204 ---V----MGS---F-SG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIF 271 (453)
Q Consensus 204 ---~----~~~---~-~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~ 271 (453)
. .++ . ++ .|+.++ -..+|.-++++.=+..+...=..+.+.+|+| .+..++....|......+
T Consensus 197 ~~~~~g~~~~~a~~~~~n~~~~~~~---~~tfF~vf~vfFpaatgilaG~nisGdL~~P---q~~IP~GaL~Ai~vst~~ 270 (643)
T KOG2083|consen 197 NEFSSGFFGYRADIFVENLNPDIDP---GYTFFSVFAVFFPAATGILAGANISGDLKDP---QKAIPLGALLAIGVSTLL 270 (643)
T ss_pred hhhcccccccchhhcccCCCCCcCC---CCceEeeeeeecchhhhhhccccccCCCCCc---hhhcccchhhhhhhhhhh
Confidence 0 000 0 01 111111 1234455555555555555556778889998 467899999999999999
Q ss_pred HHHH
Q 012927 272 YLFC 275 (453)
Q Consensus 272 y~~~ 275 (453)
|..+
T Consensus 271 yl~~ 274 (643)
T KOG2083|consen 271 YLIF 274 (643)
T ss_pred hhhh
Confidence 9644
No 88
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=92.71 E-value=13 Score=39.39 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhhhchhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCCCCCCccccHHHHHHHHh
Q 012927 29 TLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCH-RGPDPEYGPGRNRSYLEAVDMCL 106 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~-~~~~~~~g~~~~~~y~~~~~~~~ 106 (453)
+..+-+.=-+..++|.=.+ =|-|....+|...+.++..++++.+..|+.-+-..+ +...|..| +|--+.+ .+
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG-----sYfmISR-sL 189 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG-----SYFMISR-SL 189 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC-----eeEEEec-cc
Confidence 3333333334444454332 367888889999999988888888888877666543 22233333 4544433 34
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHhhhhh
Q 012927 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISM 137 (453)
Q Consensus 107 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 137 (453)
|+-.+-.+.++.++..--+...|++..-+.+
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 5555555555555555555556665555543
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.06 E-value=2.1 Score=42.78 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=81.5
Q ss_pred Hhhhhchhhh---HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhh
Q 012927 38 ITGVIGSGVL---SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWAC 114 (453)
Q Consensus 38 ~~~~iG~GiL---~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~ 114 (453)
+++.-.-|.- ..-....++|++.++.+.++-..+.+.....-... + ..+++..-..+++++.+|+.|..+.
T Consensus 206 i~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~-----~-~~~~g~~lL~~i~~~~~G~~G~~ll 279 (427)
T PF05525_consen 206 INAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF-----P-DDINGAELLSQIANHLFGSAGQILL 279 (427)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc-----c-CCCCHHHHHHHHHHHHcChhHHHHH
Confidence 3333344444 34444556777766666665555544443321111 1 1111445678999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhc
Q 012927 115 SFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQ 165 (453)
Q Consensus 115 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 165 (453)
.+.+.+.|+-++++-....+|..++..+ ..+++.|+++..++.+.++.
T Consensus 280 ~iiv~lACLTTaIGL~~a~a~yf~~~~~---kisY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 280 GIIVFLACLTTAIGLISACAEYFSELFP---KISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998775 46677888877777666664
No 90
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=91.64 E-value=7.5 Score=40.69 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=41.1
Q ss_pred HHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHH
Q 012927 223 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 279 (453)
Q Consensus 223 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 279 (453)
+-..++++.-+-.+...=-.+-.|+|+| .|..+|-...+....+++|..+.++-
T Consensus 296 F~~~FgV~F~g~tGimAGAnMSgELk~P---SkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 296 FASTFGVFFPGTTGIMAGANMSGELKAP---SKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred hhhhheeeeccchhhhcCCCcCccccCc---cccCCccchHHHHHHHHHHHHHHHHh
Confidence 4456666666655666666778899999 46799999999999999999876543
No 91
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.11 E-value=18 Score=36.16 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=82.0
Q ss_pred ccccchHHHHHHHHHhhhhchhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHH---HHHHHcccCCCCCCCCCccccHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFAT---FLLCDCHRGPDPEYGPGRNRSYL 99 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~v~gii~li~~~~~~~~s~---~~l~~~~~~~~~~~g~~~~~~y~ 99 (453)
++++.|.+||+..-+.+.+|+|-++ ..-|..-+| ...++++.+.+++..-+- ..|.+-.|..++ .|+ -.-.=.
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~-~G~-~~GGP~ 91 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDE-DGE-YRGGPM 91 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECC-CCC-EeecHH
Confidence 3457889999999999999999665 788887666 558888888887755443 344443333221 121 111223
Q ss_pred HHHHHHhccccc-hhhHHHHHHHHHhH--HHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHH
Q 012927 100 EAVDMCLGKTNA-WACSFFVHVGLYGT--AIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 176 (453)
Q Consensus 100 ~~~~~~~G~~~~-~~~~~~~~~~~~g~--~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 176 (453)
-..++.+|+|+- .+..++ .+..++. ......-+++.+++..+ .+ ++...+...++..+..+.-+|++..++
T Consensus 92 yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~----i~-~~~~gi~l~~l~~~vi~GGikrI~~v~ 165 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFG----IP-PWITGIILAILVALVIFGGIKRIAKVS 165 (416)
T ss_pred HHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhcc----cc-HHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence 445666665532 233333 2223332 23333333444333232 11 233333333334444555566665444
Q ss_pred H-HHHHHHHHHHHHHH
Q 012927 177 V-IAAVMSFAYSFIGF 191 (453)
Q Consensus 177 ~-~~~~~~~~~~~i~~ 191 (453)
- +--++.+.|++..+
T Consensus 166 ~~lVP~Ma~~Yi~~~l 181 (416)
T PF01235_consen 166 EKLVPFMAILYILGGL 181 (416)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3 33344444444333
No 92
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=86.76 E-value=2 Score=43.14 Aligned_cols=155 Identities=17% Similarity=0.110 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHH
Q 012927 253 ANQTMKKASTMSIITTTIF-YLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFE 331 (453)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~-y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 331 (453)
.+++.+++...+..+.... ..+....++..|+.--+...-+-....++..-...++.....+...++|.+.++......
T Consensus 219 ~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 219 MRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4445555455554444444 446677888888664433333334434444444455555566666888888888876655
Q ss_pred HHHHhhcCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhHHHHH
Q 012927 332 KWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYF 410 (453)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~~~ 410 (453)
..++....-.+..++... ..+....|..........+.+.++..|. +....+..|++...+..-++|.++++
T Consensus 299 SFlgv~lg~~~~~~~~~~-------~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 299 SFLGVYLGLFEGLADLFK-------KSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHhCchhhHHHhhhHHHH-------hccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 443321111111111000 0122344666667777888888888886 78888999999989999999999999
Q ss_pred Hhhc
Q 012927 411 KQMN 414 (453)
Q Consensus 411 ~~~~ 414 (453)
+-++
T Consensus 372 ~p~~ 375 (415)
T COG0814 372 KPRK 375 (415)
T ss_pred HHHH
Confidence 8654
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.31 E-value=10 Score=38.05 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=74.3
Q ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHH
Q 012927 51 WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYT 130 (453)
Q Consensus 51 ~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 130 (453)
....++|++.++.+.++.+.+.+....- ....+ ..+++..=.....++.+|+.++.+..+.+.+.|+.++++-.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s----~~~~~--~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi 299 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDS----ASLVD--QSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLT 299 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccc--CCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777766666665555421 11011 01013345567889999999999999999999999999999
Q ss_pred HHhhhhhhcccccccccccchhHHHHHHHHHHhhcC
Q 012927 131 VTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQA 166 (453)
Q Consensus 131 i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 166 (453)
...++..++..+ .+++.|+.+..++..+++..
T Consensus 300 ~a~a~~f~~~~~----isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 300 CACAEFFAQYVP----LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHhhcC----CcHHHHHHHHHHHHHHHHHh
Confidence 999999888653 55667777777777777744
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=84.34 E-value=18 Score=35.82 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=75.7
Q ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHH
Q 012927 51 WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYT 130 (453)
Q Consensus 51 ~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 130 (453)
.....+|++.++.+..+...+.+... ..++..+. .+++..=..+..++.||+.|.++..+++.+.|.-++++-.
T Consensus 224 ~~~~~aglIa~i~La~iY~~L~ylGa-----~s~~~~~~-~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi 297 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSLFYLGA-----TSASAAGL-AANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLI 297 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-----chHhhccc-ccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777776666665555541 11110110 0113356678899999999999999999999999999999
Q ss_pred HHhhhhhhcccccccccccchhHHHHHHHHHHhhc
Q 012927 131 VTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQ 165 (453)
Q Consensus 131 i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 165 (453)
...+|...+..+ ..+++.|+.++.++.+..+.
T Consensus 298 ~a~aefF~~~~p---~~SY~~~v~if~i~sflvan 329 (431)
T COG1114 298 VACAEFFSKLVP---KLSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHH
Confidence 999999988775 46677888888877776664
No 95
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=83.29 E-value=53 Score=32.94 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=83.5
Q ss_pred CccccchHHHHHHHHHhhhhchhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHH---HHHHHcccCCCCCCCCCccccH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFAT---FLLCDCHRGPDPEYGPGRNRSY 98 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~v~gii~li~~~~~~~~s~---~~l~~~~~~~~~~~g~~~~~~y 98 (453)
++++..|.+|+...-+.+-+|+|=++ ..-|.+-.| ...++++.+.+++..-|. ..|.+-.|..++ .|+ -+--=
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~-~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGE-YRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCC-CcCCh
Confidence 34556688999999999999999776 788887666 458888888877755444 345544443332 221 00011
Q ss_pred HHHHHHHhcccc-chhhHHHHHHHHHh--HHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhH
Q 012927 99 LEAVDMCLGKTN-AWACSFFVHVGLYG--TAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 175 (453)
Q Consensus 99 ~~~~~~~~G~~~-~~~~~~~~~~~~~g--~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 175 (453)
.-.-++.+|.++ ..+.. ...+..|| ........+++.+++..+.+ ++.+-+...++.-+..+..+|+...+
T Consensus 135 ~yYi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~-----~~~~gi~la~l~~~VI~GGi~rIa~v 208 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGIP-----PLVTGIVLALLVALVIFGGIKRIAKV 208 (452)
T ss_pred HHHHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 123345555332 23333 33344444 45555666666666555432 23333444444445556666666655
Q ss_pred HHHHH
Q 012927 176 SVIAA 180 (453)
Q Consensus 176 s~~~~ 180 (453)
+-.-+
T Consensus 209 ~~~vV 213 (452)
T COG1115 209 SSKVV 213 (452)
T ss_pred HHHHH
Confidence 54433
No 96
>PHA02764 hypothetical protein; Provisional
Probab=81.53 E-value=51 Score=31.52 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=47.9
Q ss_pred ccccchHHHHHH-HHHhhhhchhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012927 24 IKRTGTLWTAVA-HIITGVIGSGVLSLAWSMAQL--GWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (453)
Q Consensus 24 ~~~~~s~~~a~~-~l~~~~iG~GiL~LP~af~~~--G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~ 100 (453)
--|..+.+.+++ |+.+...|.++ +.|+-++.. |.- .....++.++++.-....-.+...+ -|+.| +.+.|-
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSA-mPrAG--GdYVYI- 83 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTK-FPLNG--GDYAYI- 83 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC--ceEEEh-
Confidence 346677778877 77776677755 555533332 211 2222233333333333333343333 45556 455665
Q ss_pred HHHHHhccccchhhHHHHHHH
Q 012927 101 AVDMCLGKTNAWACSFFVHVG 121 (453)
Q Consensus 101 ~~~~~~G~~~~~~~~~~~~~~ 121 (453)
++++|++.+.+..+..+..
T Consensus 84 --SRAFGP~~GFLvG~a~WLt 102 (399)
T PHA02764 84 --RTAFSSKFYTIFGISLWLT 102 (399)
T ss_pred --HHhhCccHHHHHHHHHHHH
Confidence 7789998777766655443
No 97
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=79.21 E-value=71 Score=31.77 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHhhhhchhhhHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccc
Q 012927 34 VAHIITGVIGSGVLSLAWSMAQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 111 (453)
Q Consensus 34 ~~~l~~~~iG~GiL~LP~af~~~G--~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~ 111 (453)
.+....+-+|.|-++ +..++| +....++.++.+.+..+..+.+.- | ..-.+| .+..|++++.++|+.+
T Consensus 10 g~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aa--R-lg~vTg----~~l~~~~r~~~~~~~~ 79 (390)
T TIGR01197 10 GFLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCA--R-LGVVTG----LDLAEVCREHYPKVPR 79 (390)
T ss_pred HHHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH--H-heeecC----CCHHHHHHHHCCCchH
Confidence 344445557777766 234455 334444445554444444433321 1 111233 4899999999999877
Q ss_pred hhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHH--HHHHHHHhhcCCCCCchhhHH
Q 012927 112 WACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLI--FGAVQLILSQAPDFHNIQSLS 176 (453)
Q Consensus 112 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~~~l~~l~~~s 176 (453)
+...+...+...+....-....+.-++.+.+ .+...++.+ ...+.+.+...++.|.+..+-
T Consensus 80 ~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g----~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~ 142 (390)
T TIGR01197 80 ITLWILAELAIIATDMAEVIGTAIALNLLSH----IPLWGGVLITIVDVFLFLFLDKPGLRILEAFV 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHH
Confidence 7666555555555555555544444443333 222223332 223333344455667776663
No 98
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=72.62 E-value=1.1e+02 Score=30.56 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=43.7
Q ss_pred chHHHHHHHHHhhhhchhhhHHHHHHH-HhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 28 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
...+..-+.++.-..|+|=+-.|-..- ++| +..+.+.+++.++.-=.-. ++-..+ .| .++.++.++
T Consensus 5 k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLg--iIa~a~-----~g----~~~~~l~~~ 73 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLG--IIAVAL-----YG----GGVESLATR 73 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHH--HHHhhc-----cC----CCHHHHhhh
Confidence 344567788888999999999876643 455 5666666665555321111 111111 12 178888877
Q ss_pred Hhccccchhh
Q 012927 105 CLGKTNAWAC 114 (453)
Q Consensus 105 ~~G~~~~~~~ 114 (453)
. ||+.+.+.
T Consensus 74 i-~~~fg~~f 82 (431)
T COG1114 74 I-GPWFGVLF 82 (431)
T ss_pred c-cchHHHHH
Confidence 6 45544433
No 99
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=66.04 E-value=1.8e+02 Score=30.67 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHH
Q 012927 59 IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAY 129 (453)
Q Consensus 59 v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y 129 (453)
+.|++-+++.++.-..+...+.-..+..+..+| +......+.++.-.++.++ +...+..+|.+..|
T Consensus 49 vlGvlSLIfWtL~livtiKYv~ivlrADn~GEG--Gi~AL~aL~~~~~~~~~~~---~l~~lgl~Gaal~~ 114 (622)
T PRK10745 49 VFGFLSLIFWLLILVVSIKYLTFVMRADNAGEG--GILTLMSLAGRNTSARTTS---MLVIMGLIGGSFFY 114 (622)
T ss_pred eehhhHHHHHHHHHHHHHHhheEEEecCCCCCc--hHHHHHHHHhhhcccchhH---HHHHHHHHHHHHHh
Confidence 678899999988888888777766665333333 4555555554332233332 35556666766655
No 100
>PLN00151 potassium transporter; Provisional
Probab=64.41 E-value=2.2e+02 Score=31.12 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhh------hchhhhH-HHHHHHHhC-----hhHHHHHHHHHHHHHHHHHHHHH
Q 012927 29 TLWTAVAHIITGV------IGSGVLS-LAWSMAQLG-----WIAGPLAMVIFASVTLFATFLLC 80 (453)
Q Consensus 29 s~~~a~~~l~~~~------iG~GiL~-LP~af~~~G-----~v~gii~li~~~~~~~~s~~~l~ 80 (453)
+.|.+....+.+. +|+..|- +..+|...+ -+.|.+-+++.++.-.-+...+.
T Consensus 98 ~~w~~l~La~qslGVVyGDIGTSPLYv~~s~F~~~~~~~~~dIlGvLSLIfWtLtLiv~iKYV~ 161 (852)
T PLN00151 98 SVGRTLALAFQTLGVVFGDVGTSPLYTFSVMFSKVPIKSEEDVLGALSLVLYTLILIPLAKYVL 161 (852)
T ss_pred cHHHHHHHHHhhhceEeCcCCCCHHHHHHHHhcCCCCCChhheeeehHHHHHHHHHHHHHhhee
Confidence 5555544334444 6777765 345553312 25677777777776665554333
No 101
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=63.30 E-value=1.9e+02 Score=29.99 Aligned_cols=175 Identities=18% Similarity=0.233 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhh
Q 012927 59 IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 138 (453)
Q Consensus 59 v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 138 (453)
+.|++-+++.++.-..+...+.-..+..+. |+........+.++.. +..+..-.+...+..+|++..| ||-+-
T Consensus 36 vlG~lSlIfWtL~liv~iKYv~ivlradn~--GEGGi~aL~sL~~~~~-~~~~~~~~~l~~l~l~G~al~~----gDgvi 108 (534)
T PF02705_consen 36 VLGVLSLIFWTLTLIVTIKYVLIVLRADNN--GEGGIFALYSLIRRFL-KSSKRRRWLLLILGLLGAALFY----GDGVI 108 (534)
T ss_pred HHHHHHHHHHHHHHHHHHheEEEEEEeCCC--CChhHHHHHHHHHHhh-ccchhHHHHHHHHHHHHhhhhh----cceee
Confidence 668888888877777666655555554332 3325556666666333 2223322334556666666554 33211
Q ss_pred ----------cccc-cccccccchhHHHHHHHH-HHhhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 012927 139 ----------EGHE-AACEYSDTYYMLIFGAVQ-LILSQAP-DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVM 205 (453)
Q Consensus 139 ----------~~~~-~~~~~~~~~~~~i~~~i~-~pl~~~~-~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 205 (453)
|..+ .....+ ...+.+...++ ..+..+| --++.+. .+|-++.+++..+. ...+++..+++..
T Consensus 109 TPAISVlSAvEGl~v~~p~~~-~~Vv~it~~ILv~LF~iQ~~GT~~ig~--~FgPim~~WF~~l~-~~G~~~I~~~p~V- 183 (534)
T PF02705_consen 109 TPAISVLSAVEGLEVATPSLE-PYVVPITIAILVGLFAIQRFGTAKIGK--LFGPIMLLWFLTLG-VLGLYNIIQHPEV- 183 (534)
T ss_pred cchHHHHHHhhhhhccCCCCc-ceehhHHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHHHHH-HHHHHHHhhCHHH-
Confidence 1121 111222 12222222222 2333343 2233333 36777777766554 4667777765311
Q ss_pred cccccccccchhhH----HHHHHHHHhhHhhccccchhHHhHHhhhCCC
Q 012927 206 GSFSGVSTTTSIEK----MWLVAQALGDIAFAYPYSLILIEIQDTLKSP 250 (453)
Q Consensus 206 ~~~~~~~~~~~~~~----~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 250 (453)
...+.+...... .+.-+..+|..+.|..|-..+ +++|-+-
T Consensus 184 --l~A~nP~yai~f~~~~~~~~~~~LG~V~L~~TGaEAL---yADmGHf 227 (534)
T PF02705_consen 184 --LKALNPYYAIRFFIRNGWIGFFVLGAVFLCVTGAEAL---YADMGHF 227 (534)
T ss_pred --HHHhCHHHHHHHHHHcCCchhhhcchHHHHHhhHHHH---Hhhhccc
Confidence 111111110110 122456777777777776654 4566654
No 102
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=58.04 E-value=2.7e+02 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccC
Q 012927 59 IAGPLAMVIFASVTLFATFLLCDCHRG 85 (453)
Q Consensus 59 v~gii~li~~~~~~~~s~~~l~~~~~~ 85 (453)
+.|.+-+++.++.-..+...+.-+.+.
T Consensus 35 ilGvlSLIfWtL~livtiKYv~ivlrA 61 (688)
T TIGR00794 35 IFGVLSLIFWLLTFIVSFKYIFIVLRA 61 (688)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEEe
Confidence 668888888887777776655544443
No 103
>PRK12768 CysZ-like protein; Reviewed
Probab=54.73 E-value=1.1e+02 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=21.8
Q ss_pred HHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 012927 243 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 276 (453)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g 276 (453)
-.+++.|| ++++++..+...+..++....
T Consensus 8 a~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 8 ALARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34566664 799999999888888877654
No 104
>PLN00150 potassium ion transporter family protein; Provisional
Probab=51.14 E-value=3.6e+02 Score=29.39 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHHhhh------hchhhhH-HHHHHHHhC-----hhHHHHHHHHHHHHHHHHHHHHHHcc
Q 012927 25 KRTGTLWTAVAHIITGV------IGSGVLS-LAWSMAQLG-----WIAGPLAMVIFASVTLFATFLLCDCH 83 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~------iG~GiL~-LP~af~~~G-----~v~gii~li~~~~~~~~s~~~l~~~~ 83 (453)
.++.++..+....+.+. +|+..|- +..+|...+ -+.|.+-+++.++.-.-+...+.-+.
T Consensus 38 ~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~ilGvLSLIfWtLtLiv~iKYV~ivL 108 (779)
T PLN00150 38 SSPNWPKVIMHLAYQSLGVVYGDLGTSPLYVFKSTFANVGVKNNDDIIGALSLIIYTLTIIPLIKYVFIVL 108 (779)
T ss_pred cccccHHHHHHHHHhccCeEeCcCccchHHHHHHHhcCCCCCCHHHhHhHHHHHHHHHHHHHHHhheeEEE
Confidence 44556544433223332 5666664 344553322 35688888877777666655444333
No 105
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=47.84 E-value=2.3e+02 Score=26.20 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=36.2
Q ss_pred hHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHH
Q 012927 242 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIV 312 (453)
Q Consensus 242 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~ 312 (453)
.-.+.+++| +++|.+.+...+..++|...-..+...++|.. +.++...|+ --+|+..+......
T Consensus 16 ~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p~-wl~wl~~ll~~l~~ 79 (251)
T PRK04949 16 QGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLPD-WLSWLSYLLWPLAV 79 (251)
T ss_pred HHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcc-HHHHHHHHHHHHHH
Confidence 334556664 79999999999988888776444444444332 444444431 12344444444333
No 106
>PLN00148 potassium transporter; Provisional
Probab=42.97 E-value=4.8e+02 Score=28.50 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHH----HHHHHHHhhHhhccccchhHHhHHhhhCCCC
Q 012927 176 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WLVAQALGDIAFAYPYSLILIEIQDTLKSPP 251 (453)
Q Consensus 176 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 251 (453)
..+|-++.+++..+. ...+|+..++.|.- +..+.+......+ .+-+..+|-++.|..|... ++++|-+-
T Consensus 221 ~~FgPIm~lWf~~i~-~iGiyni~~~~p~V--l~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEA---LyADlGHF- 293 (785)
T PLN00148 221 FMFAPIVIIWLLSIG-SIGLYNIIHWNPKI--IHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEA---MFADLGHF- 293 (785)
T ss_pred hhhhhHHHHHHHHHH-HHHHHHHHhcCHHH--hhhcCHHHHHHHHHhCCCceEEeecchheeccchhh---hhhhccCC-
Confidence 345666666655443 46678877653211 1112111100000 1133567777777776654 45566554
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 252 PANQTMKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
.++..+ ..+..+....++.--+|-..|+.
T Consensus 294 -g~~~Ir-iaw~~~V~P~L~L~Y~GQaA~ll 322 (785)
T PLN00148 294 -TAASIR-LAFATVIYPCLVVQYMGQAAFLS 322 (785)
T ss_pred -CccceE-EeeeehHHHHHHHHHcchHHHHh
Confidence 222222 23333334444444455555665
No 107
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=40.73 E-value=4.4e+02 Score=27.39 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcc
Q 012927 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREG 140 (453)
Q Consensus 96 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~ 140 (453)
.-..++-....||++...+...+++..+..+++-++..+.....+
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 467788889999999988888899999998888888888777643
No 108
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=39.81 E-value=2.5e+02 Score=28.19 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=56.4
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHH
Q 012927 99 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 178 (453)
Q Consensus 99 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 178 (453)
.+.-+..+|.++.+++.+++.+..|.+.+++....-+.+..+.+... . ...+-++ .++..++....+++.+.-++=+
T Consensus 296 ~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~~-~-~~~~ri~-~i~~~~~G~~~~~~~vW~~~Di 372 (416)
T PF01235_consen 296 QAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGKK-A-IWIYRIL-FIAMVFIGAVIDLDLVWDLADI 372 (416)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCce-E-EEeeeeh-hhhhhhhhhcccchhHHHHHHH
Confidence 44445567888899999999999999999999999999988773211 1 1111111 1222333344566666666666
Q ss_pred HHHHHHHHHHHHH
Q 012927 179 AAVMSFAYSFIGF 191 (453)
Q Consensus 179 ~~~~~~~~~~i~~ 191 (453)
+..+..+.-++.+
T Consensus 373 ~~~lmai~Nlial 385 (416)
T PF01235_consen 373 ANGLMAIPNLIAL 385 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 6655555444433
No 109
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=38.34 E-value=5e+02 Score=27.35 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=106.7
Q ss_pred ccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 26 RTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
|+-.++...+.++.+.+|.+ ++++|--..+-|.-.. ++.+........+.... .|..-+.+..+-.|--++
T Consensus 45 r~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~-----~~~~~~l~~~~~~~~~f---~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 45 RSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYW-----FFEWNALLSVLLLGWIF---IPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred CcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHH-----HHHHHHHHHHHhhheEE---EEEEEecCeeehhHHHHH
Confidence 44555666666766666654 5678877777664322 11122222222222211 111011155677888899
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHH
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSF 184 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 184 (453)
.||++.+....+...+..+--.-.++..-+-.+++..+ .+...-.++...++........++..-+.=.+-....+
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg----~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml 192 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG----INLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIML 192 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc----cCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHH
Confidence 99988665555544444443333332222223333332 11112222333344444444445554444444443333
Q ss_pred HHHHHHHHHHHHHHHh-----CCcc-ccc--cc-cc-cccchhhHHHHHH-HHHhhHhhccccchhHHhHHhhhCCCCCc
Q 012927 185 AYSFIGFGLGVAKVIG-----NGFV-MGS--FS-GV-STTTSIEKMWLVA-QALGDIAFAYPYSLILIEIQDTLKSPPPA 253 (453)
Q Consensus 185 ~~~~i~~~~~~~~~~~-----~~~~-~~~--~~-~~-~~~~~~~~~~~~~-~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 253 (453)
.-...+.+....+... +... .++ .. .+ .|++.-..+|..+ .....-.--++.+++... +.+.-| +
T Consensus 193 ~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQ--R~lsl~--s 268 (585)
T KOG2349|consen 193 GGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQ--RYLSLP--S 268 (585)
T ss_pred HHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHh--HHhccc--c
Confidence 2222222222111100 0001 111 11 01 1222222334433 223333334555665544 444443 5
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHhHHhhhcCC
Q 012927 254 NQTMKKASTMSIITTTIFYL---FCGGFGYAAFGD 285 (453)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~y~---~~g~~gy~~fg~ 285 (453)
.|+-++.........++... ..|++.|..|.|
T Consensus 269 lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 269 LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred HHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 58888887776555555544 455555656643
No 110
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=36.11 E-value=4.7e+02 Score=26.41 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=102.5
Q ss_pred cchHHHHHHHHHhhhhchhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHcccCCCCCCCCCccccHHHHHHH
Q 012927 27 TGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMVIFASVTLFAT-FLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~v~gii~li~~~~~~~~s~-~~l~~~~~~~~~~~g~~~~~~y~~~~~~ 104 (453)
-.|-..-+.....+.+|.|- --.||...+-|=. ..++.....+-..+. .++.|..-.+ +.+++...+|+.+..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg--AFll~yli~~l~~GiPlli~Ef~iGr--~~~~~~~~a~~~l~~- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG--AFLLPYLIFLLLVGIPLLLAEFAIGR--RGRKNAVGAFRKLAP- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcc--hHHHHHHHHHHHHhHHHHHHHHHhhh--hcCCChhHHHHHhcc-
Confidence 44445666677888888884 4579886665522 222222222222222 3444533211 111114556766665
Q ss_pred HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcc-------cccc--------ccc-ccchhHHHH---HHHHHHhhc
Q 012927 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREG-------HEAA--------CEY-SDTYYMLIF---GAVQLILSQ 165 (453)
Q Consensus 105 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-------~~~~--------~~~-~~~~~~~i~---~~i~~pl~~ 165 (453)
+|+++++ .....+..+..+.-|.++.|=.+... .+.+ .+. ++....+.. ..++.....
T Consensus 83 --~~~~~~~-G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 83 --KKKWEWI-GWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred --Cccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3433332 22233444444555555544444321 0000 000 111111111 111112222
Q ss_pred CCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-cccccccchhhHHHHHHHHHhhHhhccc-cchhHHh
Q 012927 166 APDF-HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGS-FSGVSTTTSIEKMWLVAQALGDIAFAYP-YSLILIE 242 (453)
Q Consensus 166 ~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~ 242 (453)
.|-. +...+.+.+-.-..++..++ +.++....++..++- .---||.+...+......++|...|+.+ |-.....
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~---Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFII---LVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHH---HHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 34666766655554433322 333333332221110 0011344433334456688888888887 5555666
Q ss_pred HHhhhCCCCCchhhHHHHHHHHHHHHHHHHH
Q 012927 243 IQDTLKSPPPANQTMKKASTMSIITTTIFYL 273 (453)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~ 273 (453)
.-..+++. ++..+........-+..=.
T Consensus 237 YsSYL~k~----~~l~~sa~~v~~~n~~~s~ 263 (439)
T COG0733 237 YSSYLSKK----SDLVSSALSIVLLNTLISL 263 (439)
T ss_pred HHhhcCcc----cchhhhHHHHHHHHHHHHH
Confidence 66666653 6676644444333333333
No 111
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=35.80 E-value=84 Score=28.52 Aligned_cols=77 Identities=9% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHH---------hhhhhcchhhhhhhHHHHHHhhccc-----hhhHHHHHHHHHHHHHHHH
Q 012927 370 VYVVSVTAIAMSFPYFNQVLGV---------IGGVIFWPLTIYFPVEMYFKQMNIE-----AWTRKWVMLRVFSYVCFIV 435 (453)
Q Consensus 370 ~~~~~~~~iA~~vp~~~~v~~l---------~Ga~~~~~l~~ilP~l~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~ 435 (453)
..++.++++|..++.++-++.. -||.++..+.++= |+..-+.. .....+|+-++++++|+++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 3444566666666666544443 4778877777664 22221111 0111234556677788888
Q ss_pred HHHHH--HHHHHHHHhh
Q 012927 436 STFGL--VGSIQGIISA 450 (453)
Q Consensus 436 ~~~gt--~~si~~ii~~ 450 (453)
.+-++ |..++.+-+.
T Consensus 237 ~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHhHHHHhhHHHH
Confidence 88777 4455554443
No 112
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=33.16 E-value=42 Score=21.81 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 012927 257 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 287 (453)
Q Consensus 257 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 287 (453)
|..+...++.+.+++..+.|..-|-+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4556777777777777777777888888753
No 113
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=32.76 E-value=5e+02 Score=25.72 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHh-ccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCch
Q 012927 94 RNRSYLEAVDMCL-GKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 172 (453)
Q Consensus 94 ~~~~y~~~~~~~~-G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 172 (453)
+..|..|+-++-+ ++...|...+.+++..++.+++..+..+..++...+.+ ...-+++++..+..-......|..
T Consensus 104 nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid----Y~tgL~ifa~~V~iYt~fGGFRAv 179 (473)
T COG4145 104 NALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID----YTTGLLIFAVSVAIYTAFGGFRAV 179 (473)
T ss_pred CCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC----chhhHHHHHHHHHHHHhhcceeee
Confidence 5578899988886 44566889999999999999999999999888766543 334556666555555555554444
Q ss_pred h
Q 012927 173 Q 173 (453)
Q Consensus 173 ~ 173 (453)
.
T Consensus 180 v 180 (473)
T COG4145 180 V 180 (473)
T ss_pred e
Confidence 3
No 114
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=32.48 E-value=5.8e+02 Score=26.39 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhhhchh-hhHHHHHHHH-hCh---hHHHHHHHHHHHHHHHHHHHHHHccc
Q 012927 29 TLWTAVAHIITGVIGSG-VLSLAWSMAQ-LGW---IAGPLAMVIFASVTLFATFLLCDCHR 84 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~G-iL~LP~af~~-~G~---v~gii~li~~~~~~~~s~~~l~~~~~ 84 (453)
|-.+-....+...+|.| +.-.|+-..+ +|. ++=.+.++++++=..+.=..+.|..+
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~ 66 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSR 66 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44566777889999998 7779999654 442 33333333444333333344444433
No 115
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=30.97 E-value=5.8e+02 Score=25.88 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHhhhhhcchhhhhhhHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012927 370 VYVVSVTAIAMSFPY---FNQVLGVIGGVIFWPLTIYFPVEMYFKQMN-IEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 445 (453)
Q Consensus 370 ~~~~~~~~iA~~vp~---~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~gt~~si~ 445 (453)
+++....+.....|. ...+++++|.--...+.=++=++.-+..+| .++++...+....+--.|.++.+.|.-+++.
T Consensus 237 iLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg 316 (441)
T PF02447_consen 237 ILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAFG 316 (441)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 344445555555553 567888887655333333332222222222 2233333345556666788888889888888
Q ss_pred HHHhhh
Q 012927 446 GIISAK 451 (453)
Q Consensus 446 ~ii~~~ 451 (453)
++++|-
T Consensus 317 ~vl~~s 322 (441)
T PF02447_consen 317 QVLKDS 322 (441)
T ss_pred HHHHhC
Confidence 888764
No 116
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=30.96 E-value=1.4e+02 Score=22.35 Aligned_cols=57 Identities=11% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 012927 225 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 285 (453)
Q Consensus 225 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~ 285 (453)
...|+...+-.|.....+..++-.+| +.+.+|....++++ ..+-+++|++.|..||.
T Consensus 15 li~GIiLL~~ACIFAfidFSK~~s~~--~~~~wRalSii~FI--lG~vl~lGilifs~y~~ 71 (91)
T PHA02680 15 LICGVLLLTAACVFAFVDFSKNTSNV--TDYVWRALSVTCFI--VGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCC--cchhHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 45566666666666667777766555 33333333333333 33445677888888873
No 117
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.74 E-value=36 Score=25.35 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=5.0
Q ss_pred CcccCCCC
Q 012927 1 MVLSSADK 8 (453)
Q Consensus 1 ~~~~~~~~ 8 (453)
|+||+.|+
T Consensus 1 M~LSe~E~ 8 (82)
T PF11239_consen 1 MPLSEHEQ 8 (82)
T ss_pred CCCCHHHH
Confidence 66666654
No 118
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.58 E-value=47 Score=21.35 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCc
Q 012927 260 ASTMSIITTTIFYLFCGGFGYAAFGDNT 287 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 287 (453)
+...+..+.+++..+.|...|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4456677777777777888888888543
No 119
>PRK09928 choline transport protein BetT; Provisional
Probab=26.84 E-value=6.2e+02 Score=27.29 Aligned_cols=109 Identities=11% Similarity=0.034 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHhhhhchhhhHH----HHHHHHh---Ch-------hHHHHHHHHHHHHHHHHHHHHHHcc---cCCCCC
Q 012927 27 TGTLWTAVAHIITGVIGSGVLSL----AWSMAQL---GW-------IAGPLAMVIFASVTLFATFLLCDCH---RGPDPE 89 (453)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~L----P~af~~~---G~-------v~gii~li~~~~~~~~s~~~l~~~~---~~~~~~ 89 (453)
.-|.++-+..++.+-+|+|++.- |....+. |- -.+.....+=+.+..|+.+.+.-.. ....
T Consensus 92 efS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr-- 169 (679)
T PRK09928 92 EFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR-- 169 (679)
T ss_pred CCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc--
Confidence 34444556778888899998854 4332211 21 1233333444444555555544322 1100
Q ss_pred CCCCccccHHHHHHHHhccc----cchhhHHHHHHHHHhHHHHHHHHhhhhhhc
Q 012927 90 YGPGRNRSYLEAVDMCLGKT----NAWACSFFVHVGLYGTAIAYTVTSAISMRE 139 (453)
Q Consensus 90 ~g~~~~~~y~~~~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 139 (453)
.+ ...+.....+-.+|++ .+.++|+...+...+....-+-+....+..
T Consensus 170 ~~--~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~ 221 (679)
T PRK09928 170 YN--LPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNY 221 (679)
T ss_pred CC--CCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 3367777777777754 235677666655555555555555444443
No 120
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.38 E-value=2.7e+02 Score=23.29 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccch
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 326 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~ 326 (453)
|+.+|.+....-....+..++|+..-..+.|+. .+-+..+ -.+|+....-+++.++.+..+-.+..|-
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~S--lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYS--LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--Ccccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667788888888888888888885555554443 2222222 3688888888888888887776556663
No 121
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=26.10 E-value=8e+02 Score=25.92 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhhhhchhhhH-HHHH-HHHhCh---hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 29 TLWTAVAHIITGVIGSGVLS-LAWS-MAQLGW---IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~-LP~a-f~~~G~---v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
+-++.....+...++.|-.= .||- ++++|. ++=++++++.|+=-.|-=..|.|.++. | ...-+..++=
T Consensus 83 ~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-----g--~~gvw~ri~P 155 (629)
T KOG3659|consen 83 SKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-----G--CIGVWRRIAP 155 (629)
T ss_pred hHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-----c--chhHHHHhCH
Confidence 33566777777777777554 5887 556664 666777777777666666666666543 1 2233444443
Q ss_pred HHhccccchhhHHHHHHHHHh
Q 012927 104 MCLGKTNAWACSFFVHVGLYG 124 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g 124 (453)
. +|..|.-++.++.+...+-
T Consensus 156 ~-l~Gigy~i~~i~~~~~~yy 175 (629)
T KOG3659|consen 156 A-LKGIGYAICLIAFFVGLYY 175 (629)
T ss_pred H-hcCCchhhhHHHHHHHHHH
Confidence 3 3444555555555554443
No 122
>CHL00020 psbN photosystem II protein N
Probab=25.76 E-value=46 Score=21.30 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCC
Q 012927 260 ASTMSIITTTIFYLFCGGFGYAAFGDN 286 (453)
Q Consensus 260 ~~~~a~~~~~~~y~~~g~~gy~~fg~~ 286 (453)
+...++.+..++..+.|..-|-+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666677777777777777788865
No 123
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.84 E-value=5.2e+02 Score=23.30 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccc
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 325 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p 325 (453)
|+..|.+....-....+..++|+..-..+-++.++.+-+.++ -++|+....-+++.++.+..+..+.+|
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfyS--lHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYS--LHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677888888778888888875555554544434433333 478888888888888888887666666
No 124
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=24.38 E-value=2e+02 Score=19.50 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012927 422 WVMLRVFSYVCFIVSTFGLVGSIQGIISAK 451 (453)
Q Consensus 422 ~~~~~~~~~~g~~~~~~gt~~si~~ii~~~ 451 (453)
-.+.++..+++.+..+.|-|-.|++-++.+
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk~IRnY~r~K 35 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYKVIRNYFRRK 35 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 356677888889999999999999988765
No 125
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=22.61 E-value=3.4e+02 Score=23.02 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccch
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 326 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~ 326 (453)
|+.+|.+....-...++..++|+..-..+.++. ++.+-++ -.+|+..+.-+++.++-+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fyS--lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYS--LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCcccc--HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 667888888888888888888886655555443 3322223 4688888888999999988888877774
No 126
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.47 E-value=3.3e+02 Score=22.77 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccch
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 326 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~ 326 (453)
|+..|.+....-....+...+|+..-..+.++. .+ .|+.+ -.+|+....-+++.++.+..+..+.+|-
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~-~hf~S-lHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GY-PDMYS-LHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455666888888888888888886655554442 22 23321 4688888888899999988887777773
No 127
>PLN02680 carbon-monoxide oxygenase
Probab=22.15 E-value=3e+02 Score=25.15 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCccccccccccccCChhHHHHHHHHHHHHHHhhhcccccc
Q 012927 255 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQP 325 (453)
Q Consensus 255 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p 325 (453)
|+.+|.+....-...++..++|+..-..+.++ ..+-+.++ -++|+....-+++.++-+..+-.+.+|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfyS--lHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYS--LHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccccc--HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 67888888888888888888888654444443 33333333 468888888888888888877666666
No 128
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=21.45 E-value=9.6e+02 Score=25.19 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHhccccchhhHH
Q 012927 59 IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (453)
Q Consensus 59 v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~~~~G~~~~~~~~~ 116 (453)
+.|++-+++.++.-..|...+.-..|.-+. |+.+..+...++++..+|+.+++.-.
T Consensus 55 VlGvlSLi~WtLtlIVTiKYv~~vlRADN~--GEGGilsL~aL~~~~~~~~~~~l~~~ 110 (627)
T COG3158 55 VLGVLSLIIWTLTLIVTIKYVLFVLRADNN--GEGGILSLMALARRAAPRRTALLIIL 110 (627)
T ss_pred eeeHHHHHHHHHHHHHHHhhheeEEecCCC--CCchhhhHHHHHHhhcCCCchhhhhH
Confidence 679999999999988998888777765433 33378999999999988776665443
No 129
>PRK09928 choline transport protein BetT; Provisional
Probab=21.19 E-value=1e+03 Score=25.71 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012927 146 EYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIG 200 (453)
Q Consensus 146 ~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~ 200 (453)
.+.+-.|.++.+++-..+.....++.++..+.++.+= +..+++.+..++.+...
T Consensus 450 ~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alP-f~~I~ll~~~sl~k~l~ 503 (679)
T PRK09928 450 NWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLP-FSFVIFFVMAGLYKSLK 503 (679)
T ss_pred cceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3455578888777777777777778777777765542 22333334445555543
Done!