Query 012927
Match_columns 453
No_of_seqs 131 out of 1159
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 4.9E-15 1.7E-19 148.7 28.5 364 24-416 6-379 (445)
2 3gia_A Uncharacterized protein 99.6 1.7E-12 5.9E-17 130.1 31.7 239 24-284 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.4 8.1E-11 2.8E-15 120.0 28.7 281 23-321 8-307 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 5E-06 1.7E-10 84.0 23.7 153 24-185 23-177 (501)
5 3dh4_A Sodium/glucose cotransp 98.0 0.015 5E-07 59.0 30.9 149 25-185 19-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.046 1.6E-06 56.1 29.1 148 25-184 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 40.5 2.8E+02 0.0096 27.4 30.9 54 28-81 9-67 (519)
8 4ain_A Glycine betaine transpo 34.3 3.3E+02 0.011 27.0 11.3 112 25-139 93-223 (539)
9 3mp7_B Preprotein translocase 20.7 1.5E+02 0.0052 19.7 4.3 33 243-281 18-50 (61)
10 4b4a_A TATC, SEC-independent p 17.5 5E+02 0.017 22.6 13.4 30 300-329 58-87 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.71 E-value=4.9e-15 Score=148.73 Aligned_cols=364 Identities=10% Similarity=0.026 Sum_probs=205.3
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
++|+-+.++.....+++++|+|++.+|....++|.. +++..++.++..........|...+ .|+.| ...+..+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~~G-----g~y~~~~ 78 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPSPG-----GSYAYAR 78 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCCTT-----THHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC-----CchhhHH
Confidence 467889999999999999999999999998889964 7778888888888888888886654 23333 5666779
Q ss_pred HHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhHHHHH-HHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFG-AVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
+.+||+.+++..+...+........+....++.+....+.. ......+++... +++......+..|....++......
T Consensus 79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~ 157 (445)
T 3l1l_A 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 99999999999998888877777788888888777654321 111112222211 2222223333444444544433332
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhHHHHHH
Q 012927 183 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST 262 (453)
Q Consensus 183 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 262 (453)
.+.. .+...+.-....++ +.-.+++. ........++..++....|+|.+........+|+||| +|+.+|++.
T Consensus 158 ~i~~---~~~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~ 229 (445)
T 3l1l_A 158 ALIP---IVGIAVFGWFWFRG-ETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATI 229 (445)
T ss_dssp HHHH---HHHHHHTTSTTCCC-CCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHhCh-hhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHH
Confidence 2221 11111111111111 00001111 1111224567889999999999999999999999998 678999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCccc----cccccccccCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHh-h
Q 012927 263 MSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE-K 337 (453)
Q Consensus 263 ~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~-~ 337 (453)
.+..+..++|...........+.+... ....-+.....++...+..+...++.+.+.-......-+.+...-.. .
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999998887766666543211 11111110012334455555555555555433333333333332221 1
Q ss_pred cCCCCCCccccccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHcC----ChHHHHHHhhhhhcchhhhhhhHHHHHHhh
Q 012927 338 FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP----YFNQVLGVIGGVIFWPLTIYFPVEMYFKQM 413 (453)
Q Consensus 338 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp----~~~~v~~l~Ga~~~~~l~~ilP~l~~~~~~ 413 (453)
.| ++..+.++.+. +.+-.+.+..+.....+....| .++.+.++.+- +..+.|.++.+.+++.+
T Consensus 310 lP--~~~~~~~~~~~---------P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~~~~~~~r 376 (445)
T 3l1l_A 310 FP--PIFARVNKAGT---------PVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVI--FTLVPYLYTCAALLLLG 376 (445)
T ss_dssp SC--GGGGCCCTTCC---------CHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred Cc--HHHHhcCCCCC---------CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 22 11111111111 2332222222121111111122 35556555542 34688889999888877
Q ss_pred ccc
Q 012927 414 NIE 416 (453)
Q Consensus 414 ~~~ 416 (453)
+++
T Consensus 377 ~~~ 379 (445)
T 3l1l_A 377 HGH 379 (445)
T ss_dssp SSS
T ss_pred hcC
Confidence 544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.59 E-value=1.7e-12 Score=130.07 Aligned_cols=239 Identities=11% Similarity=0.051 Sum_probs=154.2
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
++|+-+.++.....+++++|+|++..|.. ..++|. ..++..++.+++.......+.|...+ .|..| ...+..
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~~G-----g~y~~~ 76 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVSNA-----GPIAFI 76 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCCTT-----THHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC-----cHHHhH
Confidence 46788999999999999999999987644 566776 67888888888888888888887665 33333 566778
Q ss_pred HHHhccc--cchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccccchhH---HHHHHHHHHhhcCCCCCchhhHHH
Q 012927 103 DMCLGKT--NAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYSDTYYM---LIFGAVQLILSQAPDFHNIQSLSV 177 (453)
Q Consensus 103 ~~~~G~~--~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~---~i~~~i~~pl~~~~~l~~l~~~s~ 177 (453)
++.+|++ ++++ .....+........+....++.+....+.. ..+.+. .+...++......+..|....++.
T Consensus 77 ~~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 77 HKAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAP---INTFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp HHHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8999996 3332 344555555566677777777776654321 112221 111222222333444455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCCchhhH
Q 012927 178 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 257 (453)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 257 (453)
......+...+..++..+.. .++ .++.+......+.+++.+++...++|.+........+|+||| +|+.
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~---~~~-----~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~i 221 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLIT---IHP-----SYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNV 221 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CCG-----GGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCh-----hhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccch
Confidence 44433332222222222221 111 111111112334567888999999999999999999999998 5779
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcC
Q 012927 258 KKASTMSIITTTIFYLFCGGFGYAAFG 284 (453)
Q Consensus 258 ~~~~~~a~~~~~~~y~~~g~~gy~~fg 284 (453)
+|++..+..+..++|....+......+
T Consensus 222 p~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 222 PRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999988776555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.43 E-value=8.1e-11 Score=120.04 Aligned_cols=281 Identities=11% Similarity=0.003 Sum_probs=155.1
Q ss_pred CccccchHHHHHHHHHhhhhchhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHccc--CCCCCCCCCccccHH
Q 012927 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHR--GPDPEYGPGRNRSYL 99 (453)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~v~gii~li~~~~~~~-~s~~~l~~~~~--~~~~~~g~~~~~~y~ 99 (453)
+.+|+-+.++.....++.++| +.++|. ..+.|.. .++..++.+++.. .....+.|... . .| .| ...
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~-~P-~G-----G~y 76 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDG-WE-EG-----GVF 76 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSC-C---------CHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccccc-CC-CC-----Chh
Confidence 456788999999999999986 567775 4667753 3333333333332 25566667655 4 34 44 556
Q ss_pred HHHHHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhccccccc-cc-ccchhHHHH-HHHHHHhhcCCCCCchhhHH
Q 012927 100 EAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAAC-EY-SDTYYMLIF-GAVQLILSQAPDFHNIQSLS 176 (453)
Q Consensus 100 ~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~~-~~~~~~~i~-~~i~~pl~~~~~l~~l~~~s 176 (453)
...++.+|++.+++......+.......++....++.+......+. .. ....+.+.. .+++......+..|....+.
T Consensus 77 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIA 156 (511)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHT
T ss_pred hhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 6778999999988888888887777777776666666654421111 11 111222222 22222333445566666655
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhCCccc--ccccc-ccccchhhHHHHHHHHHhhHhhccccchhHHhHHhhhCCCCC
Q 012927 177 VIAAVMS-FAYSFIGFGLGVAKVIGNGFVM--GSFSG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 252 (453)
Q Consensus 177 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 252 (453)
....... +...++.+...+.....+++.. .+..+ .|+... .+.+.++...+++|.|........+|+|||
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P-- 230 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSK----VGTLVVFVAFILSYMGVEASATHVNEMSNP-- 230 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTS----TTTTTTHHHHHHHHTTGGGGTGGGSSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCccc----chHHHHHHHHHHHHhhHHHHHHHHHhccCc--
Confidence 5443321 1111122222222221111110 01111 111111 122346777899999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCcccc---c---ccc-ccccC--ChhHHHHHHHHHHHHHHhhhcc
Q 012927 253 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN---L---LTG-FGFYE--PYWLIDLANAFIVIHLVGGYQV 321 (453)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~---i---l~~-~~~~~--~~~l~~~~~~~~~i~~~~s~pl 321 (453)
+|+.+|++..+..+..++|....+......+++.... . ... +.... ..+...+..+...++.+.+.-.
T Consensus 231 -~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (511)
T 4djk_A 231 -GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIAS 307 (511)
T ss_dssp -TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998887666665433211 0 000 11111 2455666666666666655433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.65 E-value=5e-06 Score=83.99 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=95.4
Q ss_pred ccccchHHHHHHHHHhhhhchhhhHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQ-LGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
++|+.++++-+..-+...++.+.+.+...+.. .++.-+++..++..++...-..++..... ++| .++.++.
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~G----l~~~v~~ 94 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RWG----INFTVAA 94 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHC----CCHHHHT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hcC----CChhhhh
Confidence 35667777776666777777777777655544 22344454444444443333333323221 223 4799999
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhcccccccccc-cchhHHHHHHHHHHhhcCCCCCchhhHHHHHHH
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMREGHEAACEYS-DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 181 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 181 (453)
|..||+++..+..+...+.++|-........++.+....+...+.. ...+.+++.++.++.. ....+.++.+......
T Consensus 95 R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p 173 (501)
T 2jln_A 95 RMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASP 173 (501)
T ss_dssp TTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998989988876542110122 2234455555555555 4445667666666655
Q ss_pred HHHH
Q 012927 182 MSFA 185 (453)
Q Consensus 182 ~~~~ 185 (453)
..++
T Consensus 174 ~~~i 177 (501)
T 2jln_A 174 VLLA 177 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.97 E-value=0.015 Score=59.01 Aligned_cols=149 Identities=11% Similarity=0.063 Sum_probs=79.7
Q ss_pred cccchHHHHHHHHHhhhhch-hhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+-+++...+.+..+.+++ ..+++|-...+.|+......... ++.-......+....++. +..|.+|.-+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-------~~~T~~e~l~ 90 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK-------GIYTIPEFVE 90 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-------TCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-------CCccHHHHHH
Confidence 46677778887777666655 56778988888887543211111 111111122222222221 5689999999
Q ss_pred HHhccccchhhHHHHHH-HHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
+-||++.+.+..+...+ +.+..+.+-+...+..++...+ .+....+++..++...-....-++...+...+-.+.
T Consensus 91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFF 166 (530)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHTTC------CCSHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999888766655433 2233333334444555555543 223334445555556666777777777776666555
Q ss_pred HHH
Q 012927 183 SFA 185 (453)
Q Consensus 183 ~~~ 185 (453)
.+.
T Consensus 167 m~~ 169 (530)
T 3dh4_A 167 LVL 169 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.67 E-value=0.046 Score=56.15 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=77.8
Q ss_pred cccchHHHHHHHHHhhhhchh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012927 25 KRTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~~ 103 (453)
.|+.+++.....+..+.+++. .++.|-...+.|+........ .++........+..-.++. +..|.+|.-+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~ 119 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK-------GIYTIPEFVE 119 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-------TCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-------CCCCcHHHHH
Confidence 466778888888876666655 468888888888743211111 0110111112222222221 5689999999
Q ss_pred HHhccccchhhHHHHHH-HHHhHHHHHHHHhhhhhhcccccccccccchhHHHHHHHHHHhhcCCCCCchhhHHHHHHHH
Q 012927 104 MCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 182 (453)
Q Consensus 104 ~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 182 (453)
+-||++.+.+..+...+ ..+......+...+..++...+. +....+++..+++.......-++...+.-.+-.+.
T Consensus 120 ~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi----~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~ii 195 (593)
T 2xq2_A 120 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFF 195 (593)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999877666554332 33333334444456666655542 22333444555555566666777766666555544
Q ss_pred HH
Q 012927 183 SF 184 (453)
Q Consensus 183 ~~ 184 (453)
.+
T Consensus 196 ml 197 (593)
T 2xq2_A 196 LV 197 (593)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=40.49 E-value=2.8e+02 Score=27.36 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhhhhchh-hhHHHHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHH
Q 012927 28 GTLWTAVAHIITGVIGSG-VLSLAWSMAQLG----WIAGPLAMVIFASVTLFATFLLCD 81 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G----~v~gii~li~~~~~~~~s~~~l~~ 81 (453)
+|-.+-++..+.+.+|.| +.=.||-..+-| +++=++.++++++=-.+.=..+.|
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq 67 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 67 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345577788899999999 667899976655 455555555555544444444445
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=34.27 E-value=3.3e+02 Score=26.97 Aligned_cols=112 Identities=6% Similarity=-0.046 Sum_probs=56.2
Q ss_pred cccchHHHHHHHHHhhhhchhhhHH----HHHHHHh---C-----hhHHHHHHHHHHHHHHHHHHHHHH---c---ccCC
Q 012927 25 KRTGTLWTAVAHIITGVIGSGVLSL----AWSMAQL---G-----WIAGPLAMVIFASVTLFATFLLCD---C---HRGP 86 (453)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~L----P~af~~~---G-----~v~gii~li~~~~~~~~s~~~l~~---~---~~~~ 86 (453)
++.-|.++-+..++.+-+|+|++.- |....+. | .-.+.....+=+-+..|+.+.+.- + +|+.
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~ 172 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVG 172 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTC
T ss_pred CCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666777888999999999853 4433221 1 112333333434444445544433 1 1221
Q ss_pred CCCCCCCccccHHHHHHH-HhccccchhhHHHHHHHHHhHHHHHHHHhhhhhhc
Q 012927 87 DPEYGPGRNRSYLEAVDM-CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRE 139 (453)
Q Consensus 87 ~~~~g~~~~~~y~~~~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 139 (453)
.| .+.+..-|+=++++ .-|+. +.++|+.-.+...+....-+-+....+..
T Consensus 173 ~p--l~iss~l~PllG~r~~~G~~-G~~IDilav~atv~GvatSLGlg~~Qi~~ 223 (539)
T 4ain_A 173 RK--QLLSSAFVPLIGEKGAEGWL-GKLIDILAIIATVFGTACSLGLGALQIGA 223 (539)
T ss_dssp CC--SCTTGGGHHHHHHHHTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CcHHHHhHhhcCCCccCCcc-hhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 11133345566665 45554 45667666555555455555555555543
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=20.69 E-value=1.5e+02 Score=19.73 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh
Q 012927 243 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 281 (453)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 281 (453)
+.+-.++| +++.+.++...+... ..++|++||.
T Consensus 18 vlk~~~KP--d~~Ef~~iak~~~iG----~~i~G~iGf~ 50 (61)
T 3mp7_B 18 AFLVTKKP--NWATYKRAAKITGLG----IILIGLIGML 50 (61)
T ss_dssp HHHHSCCC--CTTHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34556777 788888876654322 2334555554
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=17.50 E-value=5e+02 Score=22.63 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHHHHHhhhcccccchHHH
Q 012927 300 PYWLIDLANAFIVIHLVGGYQVYSQPIFAH 329 (453)
Q Consensus 300 ~~~l~~~~~~~~~i~~~~s~pl~~~p~~~~ 329 (453)
.+.+..-.++.....++.+.|...+.+-..
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~F 87 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRF 87 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999966554433
Done!