Query 012927
Match_columns 453
No_of_seqs 131 out of 1159
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 18:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012927.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012927hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 55.0 77 0.0056 28.8 28.5 102 28-136 5-111 (509)
2 d1rh5b_ f.23.28.1 (B:) Preprot 21.6 48 0.0035 20.2 3.4 34 243-282 11-44 (56)
3 d1ppjc1 f.32.1.1 (C:261-379) M 9.5 2.3E+02 0.017 19.7 5.1 26 378-406 20-46 (119)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 7.7 2.5E+02 0.018 18.6 4.6 23 305-327 65-87 (103)
5 d3cx5c1 f.32.1.1 (C:262-385) M 6.5 3.9E+02 0.029 18.6 5.2 16 381-396 23-39 (124)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.8 3E+02 0.022 16.3 5.6 11 193-203 23-33 (57)
7 d1jb0l_ f.31.1.1 (L:) Photosys 4.7 5.8E+02 0.042 18.3 6.7 26 223-248 122-147 (151)
8 d1q90g_ f.23.26.1 (G:) PetG su 4.0 2.9E+02 0.021 13.8 2.0 16 56-71 7-22 (30)
9 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.6 1.5E+02 0.011 22.7 1.0 14 40-53 4-17 (202)
10 d1wpga4 f.33.1.1 (A:1-124,A:24 3.3 8.9E+02 0.065 20.6 6.5 17 376-392 422-438 (472)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=54.96 E-value=77 Score=28.83 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhhhhchhhhH-HHHHHH-HhC---hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012927 28 GTLWTAVAHIITGVIGSGVLS-LAWSMA-QLG---WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (453)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~-LP~af~-~~G---~v~gii~li~~~~~~~~s~~~l~~~~~~~~~~~g~~~~~~y~~~~ 102 (453)
.|-.+-++..++..+|.|-+= .||-.. ++| +++=.+.++++++=..+-=..+.|..++ | ....+..+.
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-----g--~i~~~~~i~ 77 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-----Q--GHGTTPAIF 77 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----T--TCCSHHHHH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----C--cccHHHHHH
Confidence 345677888899999998655 899964 555 3444444444444433333444454433 1 345677776
Q ss_pred HHHhccccchhhHHHHHHHHHhHHHHHHHHhhhh
Q 012927 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAIS 136 (453)
Q Consensus 103 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 136 (453)
....+.+....+.....+.++..++-|.+..+-.
T Consensus 78 ~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~ 111 (509)
T d2a65a1 78 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWT 111 (509)
T ss_dssp HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6655433222333334444444555555554443
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.58 E-value=48 Score=20.16 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHhhhCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 012927 243 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 282 (453)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 282 (453)
+.+-.++| +++.++++...+.. =..++|++||..
T Consensus 11 vlk~~~KP--~~~Ef~~ia~v~~i----G~~i~G~IGf~I 44 (56)
T d1rh5b_ 11 VWLVLKKP--TKDEYLAVAKVTAL----GISLLGIIGYII 44 (56)
T ss_dssp HHHSEECC--CHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34445677 78888886654422 223455555554
No 3
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.52 E-value=2.3e+02 Score=19.75 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=14.5
Q ss_pred HHHHcCC-hHHHHHHhhhhhcchhhhhhhH
Q 012927 378 IAMSFPY-FNQVLGVIGGVIFWPLTIYFPV 406 (453)
Q Consensus 378 iA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~ 406 (453)
+--.+|| ++.++.+.+|+. +.+++|-
T Consensus 20 iLRsipnK~gGvl~m~~si~---il~~lP~ 46 (119)
T d1ppjc1 20 ILRSIPNKLGGVLALAFSIL---ILALIPL 46 (119)
T ss_dssp HHHTCSSHHHHHHHHHHHHH---GGGTHHH
T ss_pred HHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 3334887 676666666553 3444444
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.67 E-value=2.5e+02 Score=18.60 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhhcccccchH
Q 012927 305 DLANAFIVIHLVGGYQVYSQPIF 327 (453)
Q Consensus 305 ~~~~~~~~i~~~~s~pl~~~p~~ 327 (453)
...|++..+.++....+...+.-
T Consensus 65 ~~gr~~~~~~~~~Gi~~~~~~~~ 87 (103)
T d1r3jc_ 65 LWGRCVAVVVMVAGITSFGLVTA 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444333
No 5
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.51 E-value=3.9e+02 Score=18.58 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=9.7
Q ss_pred HcCC-hHHHHHHhhhhh
Q 012927 381 SFPY-FNQVLGVIGGVI 396 (453)
Q Consensus 381 ~vp~-~~~v~~l~Ga~~ 396 (453)
.+|| ++.++.+.+|+.
T Consensus 23 siP~k~~Gvl~~~~si~ 39 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAIL 39 (124)
T ss_dssp TSSSHHHHHHHHHHHHH
T ss_pred cCCcchhhhHHHHHHHH
Confidence 4787 666666665543
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.84 E-value=3e+02 Score=16.32 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=4.9
Q ss_pred HHHHHHHhCCc
Q 012927 193 LGVAKVIGNGF 203 (453)
Q Consensus 193 ~~~~~~~~~~~ 203 (453)
..+.+..+++.
T Consensus 23 s~~~y~~E~~~ 33 (57)
T d2h8pc1 23 SYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhcCC
Confidence 33444555443
No 7
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.73 E-value=5.8e+02 Score=18.32 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=19.5
Q ss_pred HHHHHhhHhhccccchhHHhHHhhhC
Q 012927 223 VAQALGDIAFAYPYSLILIEIQDTLK 248 (453)
Q Consensus 223 ~~~~~~~~~faf~~~~~~~~i~~~m~ 248 (453)
+...++-.+|||..-.+..-+..-|+
T Consensus 122 ~~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 122 FVGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhccccHHHHHHHHHcchHHHHHHHH
Confidence 45788889999988777766665554
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.02 E-value=2.9e+02 Score=13.77 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.6
Q ss_pred hChhHHHHHHHHHHHH
Q 012927 56 LGWIAGPLAMVIFASV 71 (453)
Q Consensus 56 ~G~v~gii~li~~~~~ 71 (453)
+|+++|.+-..+.+.+
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5666666666555553
No 9
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.59 E-value=1.5e+02 Score=22.65 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=11.0
Q ss_pred hhhchhhhHHHHHH
Q 012927 40 GVIGSGVLSLAWSM 53 (453)
Q Consensus 40 ~~iG~GiL~LP~af 53 (453)
+++|.|-+++|.|.
T Consensus 4 ~ViGlG~vGl~~a~ 17 (202)
T d1mv8a2 4 SIFGLGYVGAVCAG 17 (202)
T ss_dssp EEECCSTTHHHHHH
T ss_pred EEECCCHhHHHHHH
Confidence 46788888888874
No 10
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.29 E-value=8.9e+02 Score=20.63 Aligned_cols=17 Identities=0% Similarity=0.010 Sum_probs=11.3
Q ss_pred HHHHHHcCChHHHHHHh
Q 012927 376 TAIAMSFPYFNQVLGVI 392 (453)
Q Consensus 376 ~~iA~~vp~~~~v~~l~ 392 (453)
.++...+|.++.+++..
T Consensus 422 ~~~i~yiP~l~~vf~~~ 438 (472)
T d1wpga4 422 HFLILYVDPLPMIFKLK 438 (472)
T ss_dssp HHHHHHSTTTHHHHTCC
T ss_pred HHHHHHhhHHHHHHccc
Confidence 34445689888877654
Done!