Query 012928
Match_columns 453
No_of_seqs 257 out of 1733
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 5E-107 1E-111 856.4 40.2 335 98-433 24-371 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 2E-106 4E-111 852.1 40.0 343 96-438 35-381 (513)
3 PLN02623 pyruvate kinase 100.0 6E-106 1E-110 855.0 42.5 384 51-436 64-447 (581)
4 PF00224 PK: Pyruvate kinase, 100.0 4E-107 8E-112 830.5 31.6 339 98-437 1-346 (348)
5 COG0469 PykF Pyruvate kinase [ 100.0 4E-106 9E-111 840.9 36.9 339 96-435 2-344 (477)
6 PRK06739 pyruvate kinase; Vali 100.0 2E-105 5E-110 813.5 38.7 331 100-435 2-334 (352)
7 PLN02461 Probable pyruvate kin 100.0 3E-105 6E-110 843.3 40.3 343 96-439 18-366 (511)
8 PRK09206 pyruvate kinase; Prov 100.0 6E-105 1E-109 836.0 40.2 337 98-435 1-341 (470)
9 PRK06247 pyruvate kinase; Prov 100.0 2E-104 4E-109 832.2 39.0 336 97-436 3-339 (476)
10 PLN02765 pyruvate kinase 100.0 2E-103 3E-108 830.6 40.0 336 99-436 28-376 (526)
11 cd00288 Pyruvate_Kinase Pyruva 100.0 2E-103 3E-108 829.3 40.0 339 98-437 1-344 (480)
12 PRK06354 pyruvate kinase; Prov 100.0 4E-103 8E-108 842.8 40.7 340 96-436 5-348 (590)
13 PRK05826 pyruvate kinase; Prov 100.0 5E-102 1E-106 815.0 40.4 338 97-435 2-342 (465)
14 PRK14725 pyruvate kinase; Prov 100.0 4.7E-96 1E-100 779.2 38.6 342 87-436 127-600 (608)
15 TIGR01064 pyruv_kin pyruvate k 100.0 4.3E-95 9E-100 766.8 38.7 336 99-435 1-340 (473)
16 PRK08187 pyruvate kinase; Vali 100.0 9.5E-95 2E-99 762.9 37.8 340 87-434 121-481 (493)
17 KOG2323 Pyruvate kinase [Carbo 100.0 2.1E-95 4E-100 757.2 30.5 357 94-450 16-377 (501)
18 PTZ00300 pyruvate kinase; Prov 100.0 9.8E-94 2.1E-98 748.8 36.9 309 125-434 1-314 (454)
19 PRK10558 alpha-dehydro-beta-de 99.7 9.1E-17 2E-21 158.6 9.9 133 265-411 76-242 (256)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 9.7E-17 2.1E-21 157.8 10.0 131 266-410 70-234 (249)
21 PRK10128 2-keto-3-deoxy-L-rham 99.6 8E-16 1.7E-20 152.7 10.1 129 268-410 78-241 (267)
22 COG3836 HpcH 2,4-dihydroxyhept 99.6 3.1E-15 6.8E-20 143.9 11.0 133 264-410 73-240 (255)
23 PF03328 HpcH_HpaI: HpcH/HpaI 99.6 8.3E-16 1.8E-20 147.8 5.0 130 267-405 72-218 (221)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 5.3E-15 1.1E-19 145.5 9.1 128 269-410 73-235 (249)
25 TIGR01588 citE citrate lyase, 99.3 5.6E-12 1.2E-16 126.6 11.9 151 266-431 71-252 (288)
26 TIGR01418 PEP_synth phosphoeno 99.3 1.9E-11 4.1E-16 137.5 13.0 148 265-431 611-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.3 2.6E-11 5.7E-16 136.4 12.9 150 264-433 617-791 (795)
28 TIGR01417 PTS_I_fam phosphoeno 99.2 2.4E-10 5.2E-15 124.5 13.4 134 262-406 365-525 (565)
29 PRK11177 phosphoenolpyruvate-p 99.0 9.5E-10 2.1E-14 119.9 10.3 134 262-406 366-526 (575)
30 COG2301 CitE Citrate lyase bet 99.0 8.8E-10 1.9E-14 110.2 8.1 159 266-432 66-245 (283)
31 cd00727 malate_synt_A Malate s 98.7 5.5E-07 1.2E-11 96.6 16.4 128 271-406 174-345 (511)
32 cd00480 malate_synt Malate syn 98.7 8.9E-07 1.9E-11 95.5 17.8 139 281-427 185-358 (511)
33 PRK09255 malate synthase; Vali 98.6 1.7E-06 3.7E-11 93.3 16.5 133 278-426 204-378 (531)
34 TIGR01344 malate_syn_A malate 98.5 1.6E-06 3.4E-11 93.1 14.5 234 97-406 65-346 (511)
35 PF02896 PEP-utilizers_C: PEP- 98.3 1.7E-06 3.7E-11 87.4 8.4 245 97-428 16-291 (293)
36 PLN02626 malate synthase 98.2 6.2E-05 1.3E-09 81.2 16.4 238 97-406 89-372 (551)
37 PRK11061 fused phosphoenolpyru 97.5 0.0002 4.2E-09 81.1 6.9 117 279-406 549-692 (748)
38 TIGR01828 pyru_phos_dikin pyru 97.2 0.0025 5.5E-08 73.1 11.4 135 261-406 668-850 (856)
39 COG1080 PtsA Phosphoenolpyruva 97.1 0.002 4.3E-08 70.1 9.5 109 265-373 370-505 (574)
40 PRK09279 pyruvate phosphate di 96.7 0.0072 1.6E-07 69.5 10.2 135 261-406 674-856 (879)
41 PF00478 IMPDH: IMP dehydrogen 96.7 0.042 9.2E-07 57.2 14.5 124 267-406 107-240 (352)
42 PRK08649 inosine 5-monophospha 96.4 0.03 6.5E-07 58.6 11.8 120 270-406 144-285 (368)
43 TIGR02751 PEPCase_arch phospho 96.4 0.012 2.5E-07 63.7 8.5 92 280-371 122-248 (506)
44 cd00381 IMPDH IMPDH: The catal 95.9 0.21 4.6E-06 51.3 14.9 123 267-405 93-225 (325)
45 PRK05096 guanosine 5'-monophos 95.9 0.14 3.1E-06 52.9 13.4 125 266-406 106-242 (346)
46 PRK13655 phosphoenolpyruvate c 95.9 0.028 6E-07 60.7 8.4 94 278-371 119-240 (494)
47 TIGR01305 GMP_reduct_1 guanosi 95.8 0.14 3.1E-06 52.9 12.7 126 266-406 105-241 (343)
48 PTZ00314 inosine-5'-monophosph 95.5 0.32 6.9E-06 53.0 14.8 124 266-406 239-373 (495)
49 PRK00009 phosphoenolpyruvate c 95.3 0.12 2.7E-06 59.9 11.5 93 279-371 485-605 (911)
50 TIGR01304 IMP_DH_rel_2 IMP deh 95.2 0.13 2.9E-06 53.9 10.4 119 271-406 146-284 (369)
51 TIGR01302 IMP_dehydrog inosine 94.7 0.71 1.5E-05 49.6 14.6 125 266-406 222-356 (450)
52 COG3605 PtsP Signal transducti 94.7 0.06 1.3E-06 58.9 6.4 129 281-426 559-714 (756)
53 PTZ00398 phosphoenolpyruvate c 94.7 0.13 2.8E-06 60.1 9.4 144 281-424 546-717 (974)
54 PLN02274 inosine-5'-monophosph 94.4 0.64 1.4E-05 50.8 13.6 125 266-406 246-380 (505)
55 COG0574 PpsA Phosphoenolpyruva 94.4 0.25 5.5E-06 56.2 10.8 112 283-406 597-723 (740)
56 PRK07807 inosine 5-monophospha 94.0 0.75 1.6E-05 49.9 12.8 129 264-406 223-359 (479)
57 TIGR03151 enACPred_II putative 93.7 1.1 2.4E-05 45.7 12.9 112 270-405 77-189 (307)
58 PRK06843 inosine 5-monophospha 93.5 1.7 3.7E-05 46.2 14.1 125 266-406 151-285 (404)
59 PRK07107 inosine 5-monophospha 93.3 0.84 1.8E-05 49.8 11.8 122 270-406 244-381 (502)
60 cd00958 DhnA Class I fructose- 93.2 1.8 4E-05 41.8 13.1 74 265-343 140-220 (235)
61 PRK08745 ribulose-phosphate 3- 93.0 3.4 7.5E-05 40.4 14.5 140 271-428 76-221 (223)
62 PRK08883 ribulose-phosphate 3- 92.8 2.7 5.8E-05 41.0 13.5 145 264-428 65-217 (220)
63 TIGR01306 GMP_reduct_2 guanosi 92.5 3.7 8.1E-05 42.4 14.7 126 265-406 91-227 (321)
64 PRK01130 N-acetylmannosamine-6 92.2 3.9 8.5E-05 39.2 13.6 132 269-425 77-218 (221)
65 PTZ00170 D-ribulose-5-phosphat 92.1 3.2 7E-05 40.5 13.1 138 271-428 79-223 (228)
66 PRK05458 guanosine 5'-monophos 91.9 4.5 9.9E-05 41.9 14.4 128 266-408 95-232 (326)
67 COG2352 Ppc Phosphoenolpyruvat 91.6 0.44 9.6E-06 54.2 7.1 122 247-370 447-601 (910)
68 PRK13125 trpA tryptophan synth 91.5 7.9 0.00017 38.0 15.1 133 272-426 93-237 (244)
69 cd00429 RPE Ribulose-5-phospha 91.5 6.1 0.00013 36.9 13.8 133 272-422 72-210 (211)
70 cd04730 NPD_like 2-Nitropropan 91.2 4.4 9.5E-05 38.9 12.9 116 269-407 69-186 (236)
71 PF00311 PEPcase: Phosphoenolp 91.2 0.55 1.2E-05 54.0 7.6 91 281-371 364-482 (794)
72 PTZ00005 phosphoglycerate kina 90.9 2.1 4.6E-05 45.7 11.1 207 114-372 45-284 (417)
73 PRK09722 allulose-6-phosphate 90.8 9 0.0002 37.7 14.7 143 270-430 72-223 (229)
74 PRK05567 inosine 5'-monophosph 90.8 4.9 0.00011 43.6 14.1 122 269-406 229-360 (486)
75 PF14010 PEPcase_2: Phosphoeno 90.7 0.35 7.6E-06 52.3 5.1 144 279-430 119-302 (491)
76 cd03174 DRE_TIM_metallolyase D 90.4 18 0.00039 35.0 17.6 160 264-430 15-189 (265)
77 TIGR01303 IMP_DH_rel_1 IMP deh 90.3 2.4 5.2E-05 46.0 11.1 127 265-407 222-358 (475)
78 KOG2550 IMP dehydrogenase/GMP 90.2 1.6 3.4E-05 46.4 9.1 125 266-406 249-383 (503)
79 TIGR01949 AroFGH_arch predicte 89.5 7.7 0.00017 38.3 13.2 63 274-341 163-231 (258)
80 cd04740 DHOD_1B_like Dihydroor 89.5 24 0.00052 35.3 17.0 130 267-411 101-265 (296)
81 cd07944 DRE_TIM_HOA_like 4-hyd 89.4 25 0.00053 35.2 17.6 154 254-429 11-180 (266)
82 PRK05581 ribulose-phosphate 3- 89.1 17 0.00038 34.3 15.0 140 270-425 74-217 (220)
83 PLN02334 ribulose-phosphate 3- 89.1 16 0.00035 35.3 14.9 151 261-429 69-225 (229)
84 cd04726 KGPDC_HPS 3-Keto-L-gul 89.1 14 0.00031 34.4 14.2 130 272-420 69-200 (202)
85 TIGR01163 rpe ribulose-phospha 89.1 11 0.00024 35.3 13.4 135 272-422 71-209 (210)
86 cd02940 DHPD_FMN Dihydropyrimi 88.9 11 0.00023 38.2 14.0 127 267-408 112-283 (299)
87 PRK08318 dihydropyrimidine deh 88.6 13 0.00029 39.3 15.1 127 267-408 112-284 (420)
88 cd07945 DRE_TIM_CMS Leptospira 88.2 10 0.00022 38.3 13.2 167 250-429 6-189 (280)
89 PRK07226 fructose-bisphosphate 87.8 7.8 0.00017 38.6 12.0 100 263-371 34-145 (267)
90 PF01791 DeoC: DeoC/LacD famil 87.6 2.3 4.9E-05 41.4 7.9 152 263-430 13-189 (236)
91 PRK07565 dihydroorotate dehydr 87.0 14 0.00029 38.1 13.6 144 269-432 115-289 (334)
92 PRK13813 orotidine 5'-phosphat 87.0 3.9 8.6E-05 39.0 9.1 131 274-428 74-214 (215)
93 PRK00507 deoxyribose-phosphate 86.9 8.4 0.00018 37.7 11.4 148 262-426 16-176 (221)
94 cd00945 Aldolase_Class_I Class 86.6 25 0.00053 32.1 13.9 119 271-406 17-149 (201)
95 PRK13307 bifunctional formalde 86.3 13 0.00027 39.6 13.1 133 273-426 243-378 (391)
96 PLN03034 phosphoglycerate kina 86.3 3.1 6.8E-05 45.1 8.7 203 115-370 122-342 (481)
97 PRK08091 ribulose-phosphate 3- 85.9 29 0.00063 34.2 14.6 136 271-425 82-226 (228)
98 PF00682 HMGL-like: HMGL-like 85.8 31 0.00067 33.2 14.7 158 265-430 11-180 (237)
99 cd02810 DHOD_DHPD_FMN Dihydroo 85.8 20 0.00044 35.6 13.8 128 267-407 110-273 (289)
100 cd04724 Tryptophan_synthase_al 85.7 24 0.00053 34.6 14.0 100 261-371 9-135 (242)
101 PRK00694 4-hydroxy-3-methylbut 85.6 12 0.00026 41.5 12.7 160 267-433 45-231 (606)
102 PRK04302 triosephosphate isome 85.5 14 0.0003 35.7 12.1 136 273-423 78-219 (223)
103 PRK08227 autoinducer 2 aldolas 85.4 6 0.00013 39.8 9.7 142 271-428 98-248 (264)
104 TIGR02090 LEU1_arch isopropylm 85.1 48 0.001 34.7 16.6 155 265-429 19-183 (363)
105 cd00452 KDPG_aldolase KDPG and 85.1 25 0.00054 33.0 13.3 117 271-423 20-138 (190)
106 cd00331 IGPS Indole-3-glycerol 85.0 26 0.00057 33.3 13.7 127 272-421 86-216 (217)
107 cd07939 DRE_TIM_NifV Streptomy 84.6 43 0.00094 33.0 16.9 155 264-429 16-181 (259)
108 cd00958 DhnA Class I fructose- 84.6 39 0.00085 32.5 15.6 58 361-426 175-234 (235)
109 cd04722 TIM_phosphate_binding 84.4 29 0.00062 31.1 13.0 120 273-406 77-199 (200)
110 PRK02290 3-dehydroquinate synt 84.2 11 0.00024 39.3 11.1 132 267-428 13-160 (344)
111 TIGR01037 pyrD_sub1_fam dihydr 84.0 49 0.0011 33.2 16.3 104 290-408 140-265 (300)
112 PRK00073 pgk phosphoglycerate 83.9 2.4 5.2E-05 44.9 6.4 204 114-370 39-260 (389)
113 cd07948 DRE_TIM_HCS Saccharomy 83.8 50 0.0011 33.0 15.5 161 250-428 9-182 (262)
114 PLN02591 tryptophan synthase 83.8 40 0.00086 33.6 14.6 118 272-407 98-219 (250)
115 PF04551 GcpE: GcpE protein; 83.6 17 0.00037 38.1 12.3 156 268-430 32-201 (359)
116 PRK05718 keto-hydroxyglutarate 83.5 9.2 0.0002 37.2 9.8 104 288-406 22-135 (212)
117 PRK00915 2-isopropylmalate syn 83.5 75 0.0016 34.9 18.5 156 264-429 22-191 (513)
118 cd04732 HisA HisA. Phosphorib 83.4 35 0.00076 32.6 13.9 129 270-417 85-230 (234)
119 PRK14057 epimerase; Provisiona 83.2 53 0.0012 33.0 15.3 144 271-432 89-247 (254)
120 PRK02048 4-hydroxy-3-methylbut 82.6 16 0.00035 40.8 12.2 157 267-427 41-224 (611)
121 PRK15452 putative protease; Pr 82.5 11 0.00025 40.5 11.0 91 268-374 11-119 (443)
122 cd04726 KGPDC_HPS 3-Keto-L-gul 82.5 17 0.00036 34.0 11.0 118 266-406 11-133 (202)
123 TIGR00126 deoC deoxyribose-pho 82.4 23 0.00049 34.5 12.0 151 262-427 12-173 (211)
124 CHL00200 trpA tryptophan synth 82.0 57 0.0012 32.7 15.1 120 272-407 111-232 (263)
125 TIGR03128 RuMP_HxlA 3-hexulose 81.9 46 0.00099 31.3 15.8 136 272-425 68-205 (206)
126 PF00478 IMPDH: IMP dehydrogen 81.9 3.1 6.8E-05 43.5 6.2 52 99-150 95-146 (352)
127 PRK07028 bifunctional hexulose 81.8 52 0.0011 35.0 15.6 138 272-428 73-212 (430)
128 cd04729 NanE N-acetylmannosami 81.7 26 0.00056 33.5 12.2 117 270-406 82-206 (219)
129 cd04728 ThiG Thiazole synthase 81.7 38 0.00081 33.9 13.3 71 345-431 159-229 (248)
130 TIGR02660 nifV_homocitr homoci 81.2 50 0.0011 34.4 14.9 155 264-429 19-184 (365)
131 PF03060 NMO: Nitronate monoox 81.2 19 0.00042 37.0 11.7 113 269-405 102-218 (330)
132 PRK00043 thiE thiamine-phospha 81.0 26 0.00056 32.8 11.7 131 272-429 73-211 (212)
133 TIGR00973 leuA_bact 2-isopropy 80.9 53 0.0012 35.9 15.5 151 265-429 20-188 (494)
134 COG0826 Collagenase and relate 80.7 18 0.00039 37.8 11.3 117 268-410 14-148 (347)
135 PRK06015 keto-hydroxyglutarate 80.1 7.3 0.00016 37.6 7.7 47 351-411 83-129 (201)
136 TIGR00007 phosphoribosylformim 80.0 26 0.00057 33.6 11.6 128 268-415 82-227 (230)
137 PRK08005 epimerase; Validated 79.9 47 0.001 32.3 13.2 134 270-422 71-207 (210)
138 PF00834 Ribul_P_3_epim: Ribul 79.8 12 0.00026 36.0 9.1 116 272-406 72-194 (201)
139 PRK00208 thiG thiazole synthas 79.6 48 0.001 33.2 13.3 71 345-431 159-229 (250)
140 COG2225 AceB Malate synthase [ 79.6 27 0.00058 38.5 12.4 215 94-371 90-338 (545)
141 TIGR00736 nifR3_rel_arch TIM-b 79.5 60 0.0013 32.0 14.0 121 266-407 78-221 (231)
142 PRK11858 aksA trans-homoaconit 79.2 88 0.0019 32.9 17.8 156 264-429 22-187 (378)
143 PRK07695 transcriptional regul 78.9 46 0.001 31.4 12.7 129 275-427 68-198 (201)
144 PF01959 DHQS: 3-dehydroquinat 78.8 13 0.00028 39.0 9.4 130 270-428 15-169 (354)
145 TIGR01949 AroFGH_arch predicte 78.4 42 0.00091 33.1 12.7 146 263-428 31-190 (258)
146 PRK05581 ribulose-phosphate 3- 77.5 51 0.0011 31.1 12.7 131 271-428 20-163 (220)
147 PRK09389 (R)-citramalate synth 77.3 1.2E+02 0.0025 33.3 17.3 154 265-428 21-184 (488)
148 COG0036 Rpe Pentose-5-phosphat 77.2 43 0.00094 32.9 12.0 133 271-426 75-217 (220)
149 TIGR01182 eda Entner-Doudoroff 76.9 14 0.00029 35.9 8.5 106 274-412 27-134 (204)
150 cd00381 IMPDH IMPDH: The catal 76.8 5.2 0.00011 41.2 6.0 49 102-150 84-132 (325)
151 PRK08999 hypothetical protein; 76.8 35 0.00077 34.3 11.9 42 114-155 147-188 (312)
152 COG0274 DeoC Deoxyribose-phosp 76.5 18 0.00038 35.7 9.1 149 262-426 18-180 (228)
153 cd00405 PRAI Phosphoribosylant 76.3 24 0.00052 33.4 10.0 118 269-410 8-131 (203)
154 PRK13210 putative L-xylulose 5 76.2 80 0.0017 30.8 14.4 143 271-420 20-198 (284)
155 PLN02746 hydroxymethylglutaryl 76.2 48 0.001 34.7 12.9 164 250-428 55-238 (347)
156 PLN02282 phosphoglycerate kina 76.1 9.5 0.0002 40.7 7.7 210 101-370 40-267 (401)
157 PRK05283 deoxyribose-phosphate 76.0 37 0.0008 34.1 11.5 154 261-428 19-189 (257)
158 TIGR01859 fruc_bis_ald_ fructo 76.0 65 0.0014 32.6 13.5 118 309-430 75-200 (282)
159 PRK00278 trpC indole-3-glycero 75.9 81 0.0018 31.4 14.0 131 272-423 125-257 (260)
160 PRK15447 putative protease; Pr 75.9 36 0.00078 34.6 11.7 115 269-409 16-141 (301)
161 PRK14024 phosphoribosyl isomer 75.9 53 0.0011 32.1 12.5 134 269-419 86-235 (241)
162 TIGR00977 LeuA_rel 2-isopropyl 75.6 1.2E+02 0.0026 33.6 16.3 160 265-429 20-196 (526)
163 PRK07428 nicotinate-nucleotide 75.4 8.2 0.00018 39.3 6.9 66 268-338 204-272 (288)
164 COG1465 Predicted alternative 75.4 54 0.0012 33.8 12.4 132 271-431 19-194 (376)
165 PLN02925 4-hydroxy-3-methylbut 74.9 42 0.00091 38.3 12.6 158 267-431 110-294 (733)
166 cd02811 IDI-2_FMN Isopentenyl- 74.7 67 0.0015 33.0 13.4 54 365-431 255-311 (326)
167 PRK13397 3-deoxy-7-phosphohept 74.6 57 0.0012 32.7 12.4 89 294-407 67-157 (250)
168 PRK07315 fructose-bisphosphate 74.6 28 0.00062 35.4 10.5 123 301-429 70-200 (293)
169 PRK00286 xseA exodeoxyribonucl 74.0 1.3E+02 0.0028 32.1 15.9 192 142-371 10-230 (438)
170 PF01645 Glu_synthase: Conserv 73.1 67 0.0014 34.0 13.1 150 236-406 137-303 (368)
171 PRK06512 thiamine-phosphate py 73.1 52 0.0011 32.0 11.6 134 273-428 80-214 (221)
172 cd00331 IGPS Indole-3-glycerol 72.7 89 0.0019 29.7 13.7 130 266-428 29-168 (217)
173 KOG1261 Malate synthase [Energ 72.4 1.1E+02 0.0023 32.8 14.0 261 75-406 75-378 (552)
174 cd02803 OYE_like_FMN_family Ol 72.4 1.1E+02 0.0024 30.9 14.3 133 263-407 129-312 (327)
175 TIGR00612 ispG_gcpE 1-hydroxy- 72.3 1.3E+02 0.0029 31.5 16.1 145 270-430 37-192 (346)
176 COG0826 Collagenase and relate 72.3 17 0.00037 38.0 8.4 83 318-406 13-99 (347)
177 PF01274 Malate_synthase: Mala 72.2 6.4 0.00014 43.4 5.5 127 280-406 203-364 (526)
178 TIGR00262 trpA tryptophan synt 72.0 84 0.0018 31.3 13.0 118 271-406 106-227 (256)
179 PRK05286 dihydroorotate dehydr 71.9 59 0.0013 33.7 12.3 131 267-409 156-321 (344)
180 cd04742 NPD_FabD 2-Nitropropan 71.8 1.1E+02 0.0025 32.9 14.6 123 270-405 85-247 (418)
181 cd04738 DHOD_2_like Dihydrooro 71.7 97 0.0021 31.8 13.8 92 306-409 200-312 (327)
182 cd04723 HisA_HisF Phosphoribos 71.7 74 0.0016 31.0 12.4 129 270-419 90-231 (233)
183 TIGR01163 rpe ribulose-phospha 71.4 88 0.0019 29.1 14.8 137 270-430 14-160 (210)
184 cd02809 alpha_hydroxyacid_oxid 70.7 94 0.002 31.4 13.3 138 271-432 133-285 (299)
185 PRK06552 keto-hydroxyglutarate 70.5 74 0.0016 30.9 11.9 106 286-406 18-136 (213)
186 PRK04180 pyridoxal biosynthesi 70.5 65 0.0014 33.0 11.8 115 286-432 57-173 (293)
187 cd00959 DeoC 2-deoxyribose-5-p 70.1 54 0.0012 31.2 10.8 142 263-427 12-172 (203)
188 PRK00366 ispG 4-hydroxy-3-meth 70.1 1.5E+02 0.0033 31.3 14.6 146 269-429 44-200 (360)
189 TIGR01302 IMP_dehydrog inosine 69.9 8.3 0.00018 41.5 5.7 49 101-149 213-261 (450)
190 PRK15447 putative protease; Pr 69.8 30 0.00065 35.2 9.5 67 331-406 29-95 (301)
191 PLN02321 2-isopropylmalate syn 69.8 1E+02 0.0022 34.9 14.3 158 265-429 105-282 (632)
192 cd00954 NAL N-Acetylneuraminic 69.4 42 0.00091 33.6 10.3 97 271-371 25-134 (288)
193 PRK04180 pyridoxal biosynthesi 68.9 1.2E+02 0.0027 31.0 13.4 138 271-428 87-256 (293)
194 PRK05096 guanosine 5'-monophos 68.4 11 0.00023 39.4 5.9 49 102-150 98-148 (346)
195 cd04737 LOX_like_FMN L-Lactate 68.3 96 0.0021 32.5 13.0 93 291-407 209-306 (351)
196 cd00408 DHDPS-like Dihydrodipi 68.2 39 0.00084 33.4 9.7 97 271-371 22-129 (281)
197 PRK13962 bifunctional phosphog 68.0 21 0.00045 40.5 8.4 211 100-371 35-264 (645)
198 PF05690 ThiG: Thiazole biosyn 67.9 18 0.0004 36.0 7.1 82 331-428 145-226 (247)
199 TIGR00674 dapA dihydrodipicoli 67.8 29 0.00062 34.7 8.8 97 271-371 23-130 (285)
200 PRK12595 bifunctional 3-deoxy- 67.2 75 0.0016 33.4 12.0 90 293-406 169-259 (360)
201 PRK00311 panB 3-methyl-2-oxobu 66.9 1.1E+02 0.0024 30.8 12.6 131 264-406 19-181 (264)
202 TIGR03128 RuMP_HxlA 3-hexulose 66.8 1.1E+02 0.0024 28.6 12.6 139 265-425 9-155 (206)
203 PF01729 QRPTase_C: Quinolinat 66.5 14 0.00029 34.7 5.7 63 271-338 91-156 (169)
204 PRK00278 trpC indole-3-glycero 66.4 1.1E+02 0.0023 30.5 12.4 109 269-408 71-189 (260)
205 TIGR03586 PseI pseudaminic aci 66.4 1E+02 0.0022 32.1 12.6 62 325-406 104-168 (327)
206 PRK07259 dihydroorotate dehydr 66.4 1.5E+02 0.0032 29.8 15.3 131 267-412 103-269 (301)
207 PRK13398 3-deoxy-7-phosphohept 66.2 1.1E+02 0.0023 30.9 12.4 108 292-423 77-187 (266)
208 cd06557 KPHMT-like Ketopantoat 65.9 96 0.0021 31.1 11.9 145 264-429 16-192 (254)
209 cd07940 DRE_TIM_IPMS 2-isoprop 65.7 1.5E+02 0.0031 29.4 17.1 155 264-429 16-185 (268)
210 cd04727 pdxS PdxS is a subunit 65.6 1.6E+02 0.0036 30.0 15.6 139 270-428 77-247 (283)
211 TIGR01305 GMP_reduct_1 guanosi 65.6 13 0.00029 38.7 5.9 48 102-149 97-146 (343)
212 COG0119 LeuA Isopropylmalate/h 65.0 1.9E+02 0.0042 31.0 14.7 159 264-430 20-189 (409)
213 TIGR00343 pyridoxal 5'-phospha 64.9 1E+02 0.0022 31.5 11.9 134 270-428 79-250 (287)
214 TIGR00674 dapA dihydrodipicoli 64.7 26 0.00057 35.0 7.8 91 331-431 33-125 (285)
215 cd01573 modD_like ModD; Quinol 64.5 21 0.00046 35.9 7.0 65 269-338 192-259 (272)
216 cd00429 RPE Ribulose-5-phospha 64.5 1.2E+02 0.0026 28.1 15.4 133 271-430 16-161 (211)
217 PRK05848 nicotinate-nucleotide 64.2 23 0.00051 35.8 7.3 65 269-338 191-258 (273)
218 PRK10737 FKBP-type peptidyl-pr 64.1 23 0.0005 34.1 6.9 59 180-238 51-118 (196)
219 TIGR03569 NeuB_NnaB N-acetylne 63.8 1.1E+02 0.0023 31.9 12.2 57 325-401 103-161 (329)
220 PRK05458 guanosine 5'-monophos 63.3 13 0.00028 38.6 5.3 45 105-149 90-136 (326)
221 PRK04147 N-acetylneuraminate l 63.3 70 0.0015 32.1 10.6 97 271-371 28-136 (293)
222 PRK03620 5-dehydro-4-deoxygluc 63.2 48 0.001 33.6 9.4 97 271-371 32-138 (303)
223 cd00377 ICL_PEPM Members of th 63.1 46 0.001 32.8 9.0 112 271-406 88-226 (243)
224 cd04727 pdxS PdxS is a subunit 63.0 1.1E+02 0.0025 31.2 11.8 113 289-433 51-165 (283)
225 TIGR02814 pfaD_fam PfaD family 62.9 1.6E+02 0.0035 32.0 13.7 122 270-405 90-252 (444)
226 COG1157 FliI Flagellar biosynt 62.6 11 0.00023 40.5 4.6 92 336-434 274-367 (441)
227 PF03932 CutC: CutC family; I 62.0 1.6E+02 0.0034 28.6 12.4 142 269-432 9-170 (201)
228 PRK05692 hydroxymethylglutaryl 62.0 1.8E+02 0.004 29.3 14.3 156 265-428 23-196 (287)
229 TIGR00078 nadC nicotinate-nucl 61.6 12 0.00025 37.7 4.6 62 268-337 186-250 (265)
230 PRK06843 inosine 5-monophospha 61.6 14 0.0003 39.5 5.3 50 100-149 141-190 (404)
231 cd08205 RuBisCO_IV_RLP Ribulos 61.6 1.2E+02 0.0027 31.8 12.4 151 264-428 142-307 (367)
232 PRK03170 dihydrodipicolinate s 61.6 49 0.0011 33.1 9.1 97 271-371 26-133 (292)
233 PRK08417 dihydroorotase; Provi 61.5 2.1E+02 0.0046 29.9 16.0 127 262-397 41-189 (386)
234 PTZ00314 inosine-5'-monophosph 61.0 12 0.00026 40.9 4.9 45 105-149 234-278 (495)
235 PF07521 RMMBL: RNA-metabolisi 61.0 6.3 0.00014 28.5 1.9 24 125-148 7-31 (43)
236 TIGR03572 WbuZ glycosyl amidat 60.9 1.5E+02 0.0032 28.5 12.0 116 270-406 86-227 (232)
237 TIGR01361 DAHP_synth_Bsub phos 60.6 65 0.0014 32.2 9.7 91 292-406 75-166 (260)
238 cd00950 DHDPS Dihydrodipicolin 60.6 34 0.00074 34.0 7.7 91 331-431 35-127 (284)
239 cd00950 DHDPS Dihydrodipicolin 60.3 49 0.0011 32.9 8.8 97 271-371 25-132 (284)
240 cd04739 DHOD_like Dihydroorota 60.2 2.1E+02 0.0045 29.4 16.3 126 268-407 112-267 (325)
241 PLN02495 oxidoreductase, actin 60.1 1.3E+02 0.0029 31.9 12.3 48 350-407 166-215 (385)
242 PRK11840 bifunctional sulfur c 60.0 2E+02 0.0044 30.0 13.2 82 333-430 221-302 (326)
243 TIGR00343 pyridoxal 5'-phospha 59.8 1.5E+02 0.0032 30.4 11.9 114 287-432 51-166 (287)
244 COG0329 DapA Dihydrodipicolina 59.7 62 0.0013 32.9 9.5 97 271-371 29-136 (299)
245 TIGR02708 L_lactate_ox L-lacta 59.7 88 0.0019 33.1 10.8 94 291-408 216-314 (367)
246 PF00899 ThiF: ThiF family; I 59.4 63 0.0014 28.3 8.5 66 295-371 58-123 (135)
247 PLN02274 inosine-5'-monophosph 59.4 17 0.00037 39.8 5.8 50 100-149 236-285 (505)
248 PRK07114 keto-hydroxyglutarate 59.3 45 0.00098 32.7 8.1 114 284-412 18-145 (222)
249 PRK06096 molybdenum transport 59.3 23 0.0005 36.1 6.2 64 269-337 198-264 (284)
250 PRK08385 nicotinate-nucleotide 59.2 37 0.00079 34.5 7.7 67 269-338 191-260 (278)
251 PLN02424 ketopantoate hydroxym 59.2 1.5E+02 0.0032 31.1 12.1 132 261-405 36-201 (332)
252 PF03102 NeuB: NeuB family; I 58.9 1E+02 0.0022 30.5 10.7 99 292-416 55-154 (241)
253 COG0352 ThiE Thiamine monophos 58.9 1.8E+02 0.0039 28.3 12.3 125 274-429 75-209 (211)
254 PRK07709 fructose-bisphosphate 58.7 1.1E+02 0.0024 31.1 11.1 117 308-429 77-202 (285)
255 PRK06801 hypothetical protein; 58.7 1.6E+02 0.0035 29.9 12.2 119 307-429 73-202 (286)
256 PF03437 BtpA: BtpA family; I 58.5 31 0.00067 34.6 6.9 71 278-355 170-250 (254)
257 PF00677 Lum_binding: Lumazine 58.4 35 0.00076 28.2 6.2 55 199-255 20-82 (85)
258 PRK15452 putative protease; Pr 58.4 62 0.0013 35.0 9.6 87 310-406 5-96 (443)
259 PRK07028 bifunctional hexulose 58.3 2.3E+02 0.0049 30.2 13.9 127 259-406 7-138 (430)
260 cd02932 OYE_YqiM_FMN Old yello 58.1 2E+02 0.0043 29.5 13.0 24 264-287 143-174 (336)
261 PRK11572 copper homeostasis pr 58.1 2.1E+02 0.0045 28.7 14.4 141 269-431 10-170 (248)
262 PRK07084 fructose-bisphosphate 57.7 1.3E+02 0.0029 31.2 11.5 118 308-429 85-215 (321)
263 cd02808 GltS_FMN Glutamate syn 57.5 2.4E+02 0.0051 29.9 13.7 119 276-407 179-315 (392)
264 PRK07896 nicotinate-nucleotide 57.5 30 0.00065 35.3 6.7 64 270-338 209-275 (289)
265 PRK09250 fructose-bisphosphate 57.3 2.2E+02 0.0047 30.0 13.0 87 272-370 96-197 (348)
266 KOG3974 Predicted sugar kinase 56.9 68 0.0015 32.6 8.8 112 276-397 53-176 (306)
267 PF01136 Peptidase_U32: Peptid 56.8 22 0.00047 34.1 5.5 42 112-153 157-198 (233)
268 PLN02417 dihydrodipicolinate s 56.5 59 0.0013 32.6 8.7 95 271-371 26-131 (280)
269 TIGR00683 nanA N-acetylneurami 56.2 1.5E+02 0.0034 29.7 11.7 97 271-371 25-134 (290)
270 TIGR02320 PEP_mutase phosphoen 56.2 1E+02 0.0022 31.4 10.2 67 271-337 96-189 (285)
271 PRK07998 gatY putative fructos 56.0 38 0.00082 34.5 7.2 117 308-429 74-198 (283)
272 TIGR01306 GMP_reduct_2 guanosi 56.0 23 0.00051 36.6 5.7 48 102-149 84-133 (321)
273 PRK05742 nicotinate-nucleotide 55.9 30 0.00064 35.1 6.4 64 267-338 196-262 (277)
274 PRK13209 L-xylulose 5-phosphat 55.8 2E+02 0.0043 28.1 12.2 132 271-409 25-188 (283)
275 TIGR01334 modD putative molybd 55.4 34 0.00073 34.7 6.7 64 269-337 197-263 (277)
276 KOG3111 D-ribulose-5-phosphate 55.2 2.1E+02 0.0046 27.9 14.0 135 276-430 83-221 (224)
277 PF01180 DHO_dh: Dihydroorotat 55.0 1.1E+02 0.0024 30.7 10.3 146 267-431 111-293 (295)
278 cd00952 CHBPH_aldolase Trans-o 54.7 1E+02 0.0022 31.3 10.2 90 331-430 43-134 (309)
279 PRK08185 hypothetical protein; 54.5 1.7E+02 0.0037 29.7 11.6 119 307-429 67-197 (283)
280 cd00564 TMP_TenI Thiamine mono 54.4 1.7E+02 0.0036 26.5 12.3 125 272-424 64-196 (196)
281 cd00408 DHDPS-like Dihydrodipi 54.3 85 0.0018 31.0 9.3 50 381-430 73-123 (281)
282 PRK02615 thiamine-phosphate py 54.3 1.9E+02 0.0041 30.4 12.1 129 275-428 212-344 (347)
283 cd04736 MDH_FMN Mandelate dehy 54.2 1.2E+02 0.0027 31.9 10.8 95 291-410 224-322 (361)
284 PRK09250 fructose-bisphosphate 54.0 2.9E+02 0.0063 29.1 13.6 69 350-427 266-338 (348)
285 cd02922 FCB2_FMN Flavocytochro 53.9 1.7E+02 0.0036 30.6 11.7 119 290-431 200-328 (344)
286 cd00951 KDGDH 5-dehydro-4-deox 53.8 91 0.002 31.3 9.6 95 271-371 25-131 (289)
287 PF01116 F_bP_aldolase: Fructo 53.5 2.6E+02 0.0056 28.4 12.8 119 307-429 72-203 (287)
288 PF04028 DUF374: Domain of unk 53.0 57 0.0012 26.6 6.4 50 110-165 18-68 (74)
289 PRK02083 imidazole glycerol ph 53.0 2.3E+02 0.005 27.7 14.2 48 360-419 192-240 (253)
290 PRK09140 2-dehydro-3-deoxy-6-p 53.0 2.2E+02 0.0047 27.4 11.7 126 266-425 20-147 (206)
291 PRK08072 nicotinate-nucleotide 52.5 22 0.00047 36.1 4.8 65 266-338 194-261 (277)
292 PRK04452 acetyl-CoA decarbonyl 52.4 2.3E+02 0.0051 29.4 12.3 149 267-429 136-312 (319)
293 TIGR02313 HpaI-NOT-DapA 2,4-di 52.2 1.8E+02 0.0039 29.3 11.4 97 271-371 25-133 (294)
294 TIGR02355 moeB molybdopterin s 52.0 80 0.0017 31.1 8.6 66 296-372 81-146 (240)
295 cd04737 LOX_like_FMN L-Lactate 51.9 45 0.00098 34.9 7.1 93 271-367 233-341 (351)
296 TIGR00693 thiE thiamine-phosph 51.8 2E+02 0.0042 26.7 10.9 124 272-422 65-196 (196)
297 PRK12344 putative alpha-isopro 51.5 3.7E+02 0.0081 29.7 17.1 162 264-429 23-200 (524)
298 cd04501 SGNH_hydrolase_like_4 51.4 27 0.00059 31.6 4.9 40 333-372 64-103 (183)
299 cd01485 E1-1_like Ubiquitin ac 51.1 94 0.002 29.5 8.7 66 296-371 78-144 (198)
300 PRK00043 thiE thiamine-phospha 51.0 2.1E+02 0.0045 26.6 12.3 103 269-406 23-131 (212)
301 PRK07226 fructose-bisphosphate 51.0 2.6E+02 0.0056 27.7 13.9 64 274-342 167-236 (267)
302 PRK08610 fructose-bisphosphate 51.0 1.7E+02 0.0036 29.9 10.8 116 309-429 78-202 (286)
303 PRK12290 thiE thiamine-phospha 51.0 1.4E+02 0.0031 32.3 10.8 95 321-428 307-414 (437)
304 TIGR02356 adenyl_thiF thiazole 50.7 80 0.0017 30.0 8.2 65 296-371 78-142 (202)
305 cd02933 OYE_like_FMN Old yello 50.7 2.8E+02 0.006 28.7 12.7 125 263-406 140-314 (338)
306 PRK06543 nicotinate-nucleotide 50.2 33 0.00071 34.9 5.6 62 269-338 202-266 (281)
307 PF00701 DHDPS: Dihydrodipicol 50.0 99 0.0021 30.8 9.1 98 325-431 29-128 (289)
308 PLN02826 dihydroorotate dehydr 49.8 3.6E+02 0.0077 28.9 17.5 89 307-407 261-371 (409)
309 cd02808 GltS_FMN Glutamate syn 49.6 44 0.00095 35.4 6.7 92 269-373 226-341 (392)
310 cd01492 Aos1_SUMO Ubiquitin ac 49.3 1.2E+02 0.0026 28.8 9.1 64 296-371 78-141 (197)
311 cd07938 DRE_TIM_HMGL 3-hydroxy 49.2 2.9E+02 0.0062 27.7 14.9 159 265-428 17-190 (274)
312 PRK00748 1-(5-phosphoribosyl)- 49.0 2.4E+02 0.0052 26.8 11.3 125 269-415 85-229 (233)
313 cd00952 CHBPH_aldolase Trans-o 49.0 2.3E+02 0.0051 28.8 11.7 97 271-371 33-141 (309)
314 PRK05835 fructose-bisphosphate 48.7 1.8E+02 0.004 30.0 10.8 118 308-429 74-203 (307)
315 PF00290 Trp_syntA: Tryptophan 48.5 3E+02 0.0065 27.7 15.2 117 273-406 108-226 (259)
316 COG0821 gcpE 1-hydroxy-2-methy 48.2 3.6E+02 0.0077 28.5 15.5 144 271-430 40-194 (361)
317 PRK07695 transcriptional regul 48.1 35 0.00075 32.2 5.2 34 116-149 19-52 (201)
318 TIGR01037 pyrD_sub1_fam dihydr 47.9 3E+02 0.0065 27.5 14.3 88 308-407 90-190 (300)
319 PF00701 DHDPS: Dihydrodipicol 47.9 2.5E+02 0.0053 28.0 11.5 97 271-371 26-133 (289)
320 PRK13585 1-(5-phosphoribosyl)- 47.8 2.6E+02 0.0057 26.8 13.0 131 268-417 86-233 (241)
321 TIGR01036 pyrD_sub2 dihydrooro 47.7 2.6E+02 0.0056 29.0 11.9 89 308-408 210-319 (335)
322 PRK03170 dihydrodipicolinate s 47.6 94 0.002 31.1 8.5 90 331-431 36-128 (292)
323 PF01081 Aldolase: KDPG and KH 47.6 71 0.0015 30.8 7.2 47 352-412 88-134 (196)
324 cd07941 DRE_TIM_LeuA3 Desulfob 47.5 3E+02 0.0065 27.4 17.2 159 265-428 17-192 (273)
325 CHL00162 thiG thiamin biosynth 47.4 89 0.0019 31.6 8.0 54 363-428 187-240 (267)
326 PF07679 I-set: Immunoglobulin 47.2 1.2E+02 0.0027 23.6 7.6 68 177-245 8-79 (90)
327 cd00945 Aldolase_Class_I Class 46.2 1.4E+02 0.0031 27.0 8.9 43 385-429 64-110 (201)
328 TIGR00222 panB 3-methyl-2-oxob 46.1 3.3E+02 0.0072 27.5 12.5 133 262-406 17-180 (263)
329 cd01568 QPRTase_NadC Quinolina 46.1 37 0.00081 34.0 5.3 64 268-337 189-255 (269)
330 TIGR00237 xseA exodeoxyribonuc 46.0 2E+02 0.0044 30.8 11.2 139 207-371 59-225 (432)
331 TIGR00736 nifR3_rel_arch TIM-b 45.8 79 0.0017 31.2 7.4 68 274-346 155-229 (231)
332 PLN03228 methylthioalkylmalate 45.7 4.6E+02 0.0099 29.0 14.8 155 265-429 103-281 (503)
333 COG4043 Preprotein translocase 45.7 28 0.0006 30.3 3.6 29 203-232 26-54 (111)
334 PF04055 Radical_SAM: Radical 45.4 1.3E+02 0.0029 25.7 8.2 54 100-153 76-139 (166)
335 PRK09195 gatY tagatose-bisphos 45.1 2.6E+02 0.0057 28.4 11.2 129 295-429 63-201 (284)
336 cd06556 ICL_KPHMT Members of t 44.9 3.2E+02 0.007 27.0 12.7 86 308-405 73-175 (240)
337 cd00757 ThiF_MoeB_HesA_family 44.7 1.1E+02 0.0024 29.5 8.2 66 295-371 77-142 (228)
338 PRK09856 fructoselysine 3-epim 44.7 3E+02 0.0066 26.7 12.5 122 271-397 17-172 (275)
339 cd00947 TBP_aldolase_IIB Tagat 44.6 2.1E+02 0.0046 29.0 10.5 120 307-430 68-196 (276)
340 cd03332 LMO_FMN L-Lactate 2-mo 44.5 2.7E+02 0.0058 29.6 11.6 92 291-407 241-338 (383)
341 cd00953 KDG_aldolase KDG (2-ke 44.4 2.1E+02 0.0045 28.7 10.3 93 271-371 24-127 (279)
342 cd00954 NAL N-Acetylneuraminic 44.4 1.4E+02 0.003 29.9 9.1 46 384-429 80-126 (288)
343 PRK13111 trpA tryptophan synth 44.4 3E+02 0.0064 27.5 11.4 118 270-400 107-225 (258)
344 TIGR00739 yajC preprotein tran 44.3 47 0.001 27.6 4.8 42 206-248 32-73 (84)
345 COG0075 Serine-pyruvate aminot 44.3 3E+02 0.0064 29.4 11.8 42 102-150 6-47 (383)
346 smart00729 Elp3 Elongator prot 44.0 1.9E+02 0.004 25.9 9.3 44 109-152 95-147 (216)
347 PRK05690 molybdopterin biosynt 43.9 1.1E+02 0.0024 30.1 8.1 65 296-371 89-153 (245)
348 PF02599 CsrA: Global regulato 43.9 52 0.0011 25.3 4.6 30 212-242 6-35 (54)
349 cd00452 KDPG_aldolase KDPG and 43.8 1.3E+02 0.0028 28.1 8.3 103 271-409 67-174 (190)
350 PRK05567 inosine 5'-monophosph 43.7 60 0.0013 35.3 6.8 50 100-149 216-265 (486)
351 cd05565 PTS_IIB_lactose PTS_II 43.7 1.3E+02 0.0028 25.8 7.5 66 291-371 13-78 (99)
352 PRK06106 nicotinate-nucleotide 43.6 48 0.001 33.7 5.7 62 269-338 203-267 (281)
353 PRK08644 thiamine biosynthesis 43.6 1.2E+02 0.0027 29.1 8.3 65 297-372 85-150 (212)
354 TIGR01303 IMP_DH_rel_1 IMP deh 43.3 38 0.00082 36.9 5.2 50 100-149 213-262 (475)
355 KOG2550 IMP dehydrogenase/GMP 43.2 42 0.00091 36.1 5.3 46 105-150 244-289 (503)
356 PF01261 AP_endonuc_2: Xylose 43.1 1.1E+02 0.0023 27.8 7.5 119 274-397 2-155 (213)
357 PLN02495 oxidoreductase, actin 42.6 4.5E+02 0.0097 28.0 16.8 132 266-414 125-305 (385)
358 cd01487 E1_ThiF_like E1_ThiF_l 42.5 1.4E+02 0.0029 27.8 8.2 66 295-371 54-120 (174)
359 TIGR00187 ribE riboflavin synt 42.5 93 0.002 30.1 7.2 56 199-256 22-85 (200)
360 PRK15424 propionate catabolism 42.5 1.3E+02 0.0029 33.3 9.3 168 247-425 78-265 (538)
361 PF04312 DUF460: Protein of un 42.4 29 0.00062 31.7 3.4 30 353-388 64-93 (138)
362 cd08567 GDPD_SpGDE_like Glycer 41.8 1.8E+02 0.004 28.1 9.4 42 351-405 217-258 (263)
363 COG1440 CelA Phosphotransferas 41.8 1.4E+02 0.0029 26.1 7.2 65 292-371 15-79 (102)
364 cd02940 DHPD_FMN Dihydropyrimi 41.7 2.5E+02 0.0054 28.3 10.6 47 351-407 153-201 (299)
365 PLN02979 glycolate oxidase 41.7 2.4E+02 0.0051 30.0 10.5 91 291-406 211-307 (366)
366 PRK09140 2-dehydro-3-deoxy-6-p 41.6 1.3E+02 0.0029 28.9 8.1 64 271-339 115-181 (206)
367 PLN02741 riboflavin synthase 41.4 1.2E+02 0.0026 29.2 7.7 55 200-256 24-85 (194)
368 PF04476 DUF556: Protein of un 41.4 2.4E+02 0.0052 28.1 9.9 136 277-425 77-233 (235)
369 cd08556 GDPD Glycerophosphodie 41.2 2.3E+02 0.005 25.4 9.4 40 353-405 148-187 (189)
370 TIGR02313 HpaI-NOT-DapA 2,4-di 41.0 2.2E+02 0.0048 28.7 10.0 46 384-429 79-125 (294)
371 PRK00230 orotidine 5'-phosphat 41.0 60 0.0013 31.6 5.7 39 389-427 190-228 (230)
372 cd00423 Pterin_binding Pterin 40.9 93 0.002 30.7 7.2 53 115-170 28-88 (258)
373 PRK01712 carbon storage regula 40.8 69 0.0015 25.6 4.9 29 211-240 5-33 (64)
374 cd02809 alpha_hydroxyacid_oxid 40.8 84 0.0018 31.7 7.0 67 271-341 184-260 (299)
375 cd04731 HisF The cyclase subun 40.7 3.4E+02 0.0074 26.1 13.9 46 361-418 189-235 (243)
376 TIGR03249 KdgD 5-dehydro-4-deo 40.7 2.1E+02 0.0046 28.7 9.9 95 271-371 30-136 (296)
377 PRK13396 3-deoxy-7-phosphohept 40.6 4.1E+02 0.0088 28.0 12.0 88 295-406 154-242 (352)
378 TIGR01036 pyrD_sub2 dihydrooro 40.5 3.8E+02 0.0081 27.8 11.8 51 351-409 188-247 (335)
379 cd02911 arch_FMN Archeal FMN-b 40.4 3.3E+02 0.0071 26.6 10.9 95 290-408 123-222 (233)
380 PRK12738 kbaY tagatose-bisphos 40.3 3.1E+02 0.0067 28.0 10.9 129 295-429 63-201 (286)
381 COG0800 Eda 2-keto-3-deoxy-6-p 40.2 2E+02 0.0043 28.2 9.0 104 284-405 16-132 (211)
382 TIGR03217 4OH_2_O_val_ald 4-hy 40.1 4.4E+02 0.0096 27.3 14.8 148 264-429 20-185 (333)
383 cd02922 FCB2_FMN Flavocytochro 39.8 93 0.002 32.5 7.2 94 270-367 224-336 (344)
384 PLN02898 HMP-P kinase/thiamin- 39.7 4.3E+02 0.0094 28.7 12.7 90 321-430 397-499 (502)
385 cd00755 YgdL_like Family of ac 39.6 74 0.0016 31.2 6.2 82 296-392 68-150 (231)
386 COG0069 GltB Glutamate synthas 39.3 1.3E+02 0.0028 33.0 8.4 150 235-405 236-402 (485)
387 PRK07535 methyltetrahydrofolat 39.2 61 0.0013 32.4 5.6 56 114-172 28-83 (261)
388 PF01207 Dus: Dihydrouridine s 39.0 65 0.0014 32.8 5.9 69 269-342 140-218 (309)
389 TIGR02708 L_lactate_ox L-lacta 39.0 82 0.0018 33.3 6.7 94 270-367 239-348 (367)
390 cd01822 Lysophospholipase_L1_l 38.9 60 0.0013 28.9 5.1 53 320-372 52-108 (177)
391 PLN02417 dihydrodipicolinate s 38.8 2.7E+02 0.0058 27.8 10.2 41 389-429 86-126 (280)
392 cd05722 Ig1_Neogenin First imm 38.7 1.8E+02 0.0039 23.4 7.5 73 178-250 8-89 (95)
393 TIGR00259 thylakoid_BtpA membr 38.5 2.2E+02 0.0048 28.6 9.4 94 270-372 92-207 (257)
394 COG2022 ThiG Uncharacterized e 38.2 1E+02 0.0023 30.8 6.8 53 363-427 180-232 (262)
395 cd01572 QPRTase Quinolinate ph 38.1 54 0.0012 33.0 5.0 63 268-338 190-255 (268)
396 PRK09427 bifunctional indole-3 38.1 76 0.0016 34.5 6.5 71 268-343 167-244 (454)
397 cd05845 Ig2_L1-CAM_like Second 38.0 1.6E+02 0.0035 24.9 7.2 67 177-245 11-82 (95)
398 PRK05886 yajC preprotein trans 38.0 62 0.0014 28.4 4.7 45 206-251 33-77 (109)
399 PF03644 Glyco_hydro_85: Glyco 37.9 35 0.00075 35.1 3.7 74 356-431 46-133 (311)
400 TIGR02329 propionate_PrpR prop 37.9 1.8E+02 0.0038 32.2 9.4 180 238-426 56-259 (526)
401 cd08210 RLP_RrRLP Ribulose bis 37.8 5.1E+02 0.011 27.3 13.8 150 264-428 137-303 (364)
402 PRK00568 carbon storage regula 37.7 73 0.0016 26.3 4.8 28 212-240 6-33 (76)
403 cd07947 DRE_TIM_Re_CS Clostrid 37.6 4.5E+02 0.0096 26.6 12.9 148 266-428 19-198 (279)
404 PTZ00344 pyridoxal kinase; Pro 37.5 2.4E+02 0.0052 28.2 9.7 111 261-372 53-182 (296)
405 PF04131 NanE: Putative N-acet 37.5 3.8E+02 0.0082 26.0 10.3 125 274-427 6-142 (192)
406 TIGR00853 pts-lac PTS system, 37.3 1.8E+02 0.0038 24.5 7.3 63 294-371 19-81 (95)
407 PRK12857 fructose-1,6-bisphosp 37.3 2.3E+02 0.005 28.8 9.4 118 308-429 74-201 (284)
408 PRK08195 4-hyroxy-2-oxovalerat 37.2 4.9E+02 0.011 26.9 17.8 147 265-429 22-186 (337)
409 TIGR00167 cbbA ketose-bisphosp 37.1 3.1E+02 0.0066 28.0 10.3 118 308-429 77-205 (288)
410 PRK06793 fliI flagellum-specif 36.9 5.6E+02 0.012 27.8 12.7 245 158-431 28-294 (432)
411 PRK07259 dihydroorotate dehydr 36.7 3.8E+02 0.0083 26.8 11.0 46 351-406 142-189 (301)
412 PF11213 DUF3006: Protein of u 36.5 69 0.0015 25.6 4.5 42 183-227 8-50 (71)
413 cd02911 arch_FMN Archeal FMN-b 36.3 93 0.002 30.5 6.3 59 274-339 159-222 (233)
414 PRK13399 fructose-1,6-bisphosp 36.2 4.1E+02 0.0089 28.0 11.2 122 308-429 75-224 (347)
415 PLN02535 glycolate oxidase 36.1 1.1E+02 0.0024 32.3 7.1 68 271-342 235-312 (364)
416 COG0710 AroD 3-dehydroquinate 35.7 3.1E+02 0.0066 27.2 9.7 141 266-427 76-229 (231)
417 cd04739 DHOD_like Dihydroorota 35.5 5E+02 0.011 26.6 12.1 48 352-409 149-198 (325)
418 PRK03620 5-dehydro-4-deoxygluc 35.1 3.4E+02 0.0073 27.5 10.3 42 389-430 91-132 (303)
419 PRK04147 N-acetylneuraminate l 35.0 2.1E+02 0.0046 28.6 8.8 90 331-430 39-130 (293)
420 COG1892 Phosphoenolpyruvate ca 34.9 62 0.0014 35.0 5.0 90 279-368 123-245 (488)
421 PRK11750 gltB glutamate syntha 34.8 1.4E+02 0.0031 37.0 8.5 135 252-405 944-1095(1485)
422 PRK06559 nicotinate-nucleotide 34.8 79 0.0017 32.4 5.6 62 269-338 206-270 (290)
423 COG0809 QueA S-adenosylmethion 34.7 2.1E+02 0.0046 30.0 8.7 34 209-243 99-133 (348)
424 PRK15116 sulfur acceptor prote 34.7 81 0.0018 31.8 5.7 85 295-394 86-171 (268)
425 TIGR00742 yjbN tRNA dihydrouri 34.7 1.2E+02 0.0026 31.2 7.0 66 272-342 146-228 (318)
426 cd05737 Ig_Myomesin_like_C C-t 34.6 2E+02 0.0043 23.1 7.1 68 173-243 5-79 (92)
427 PRK07107 inosine 5-monophospha 34.3 76 0.0016 34.9 5.8 50 99-149 230-279 (502)
428 PF13473 Cupredoxin_1: Cupredo 33.9 88 0.0019 26.2 5.0 42 176-217 34-75 (104)
429 KOG4175 Tryptophan synthase al 33.8 3.2E+02 0.0069 27.0 9.1 122 263-405 106-234 (268)
430 TIGR00735 hisF imidazoleglycer 33.7 1.8E+02 0.0039 28.5 7.9 83 270-368 158-253 (254)
431 PRK10550 tRNA-dihydrouridine s 33.6 87 0.0019 32.1 5.8 64 274-343 155-230 (312)
432 TIGR03096 nitroso_cyanin nitro 33.6 1E+02 0.0023 28.0 5.6 16 177-192 61-76 (135)
433 PRK05437 isopentenyl pyrophosp 33.5 5.7E+02 0.012 26.6 13.3 159 258-431 125-318 (352)
434 PRK10017 colanic acid biosynth 33.4 1.8E+02 0.0038 31.3 8.3 74 323-408 110-185 (426)
435 TIGR03425 urea_degr_2 urea car 33.4 1.1E+02 0.0023 30.5 6.1 55 178-232 14-82 (233)
436 cd04731 HisF The cyclase subun 33.3 93 0.002 30.1 5.7 74 271-349 153-235 (243)
437 PRK11197 lldD L-lactate dehydr 33.2 3.8E+02 0.0082 28.5 10.6 92 291-405 233-328 (381)
438 TIGR00875 fsa_talC_mipB fructo 33.2 1.5E+02 0.0032 28.9 7.0 58 274-337 116-185 (213)
439 PRK05597 molybdopterin biosynt 33.2 2E+02 0.0044 29.9 8.5 65 296-371 85-149 (355)
440 PRK05585 yajC preprotein trans 33.2 83 0.0018 27.4 4.7 42 206-248 47-88 (106)
441 COG2070 Dioxygenases related t 33.0 3.2E+02 0.0068 28.5 9.8 111 271-404 94-211 (336)
442 COG1862 YajC Preprotein transl 32.9 70 0.0015 27.5 4.2 42 206-248 38-79 (97)
443 cd05730 Ig3_NCAM-1_like Third 32.9 2E+02 0.0044 23.0 6.9 73 168-244 2-80 (95)
444 PRK15108 biotin synthase; Prov 32.8 1.2E+02 0.0026 31.5 6.7 30 101-132 125-154 (345)
445 PRK07807 inosine 5-monophospha 32.6 70 0.0015 34.9 5.1 45 105-149 220-264 (479)
446 PRK11815 tRNA-dihydrouridine s 32.5 1.1E+02 0.0023 31.6 6.3 71 267-342 150-238 (333)
447 PRK12475 thiamine/molybdopteri 32.4 2.1E+02 0.0046 29.6 8.5 65 296-371 83-147 (338)
448 COG1646 Predicted phosphate-bi 32.1 89 0.0019 31.1 5.3 88 312-426 19-119 (240)
449 TIGR03424 urea_degr_1 urea car 32.0 1.3E+02 0.0028 29.1 6.3 55 178-232 15-83 (198)
450 PRK07877 hypothetical protein; 32.0 1.8E+02 0.0039 33.6 8.4 66 296-372 163-228 (722)
451 cd04724 Tryptophan_synthase_al 31.9 5E+02 0.011 25.4 11.4 117 272-406 96-215 (242)
452 COG0391 Uncharacterized conser 31.9 3.4E+02 0.0073 28.3 9.7 87 316-409 175-268 (323)
453 PF01079 Hint: Hint module; I 31.6 1.3E+02 0.0029 29.3 6.4 37 178-220 68-114 (217)
454 PRK09289 riboflavin synthase s 31.5 2.1E+02 0.0046 27.4 7.7 55 200-256 23-84 (194)
455 KOG0538 Glycolate oxidase [Ene 31.4 1.4E+02 0.003 31.2 6.6 93 271-367 235-343 (363)
456 TIGR00202 csrA carbon storage 30.9 1.2E+02 0.0027 24.5 5.0 29 211-240 5-33 (69)
457 PF01026 TatD_DNase: TatD rela 30.8 3.4E+02 0.0074 26.5 9.3 100 270-372 17-131 (255)
458 PRK08195 4-hyroxy-2-oxovalerat 30.8 6.2E+02 0.013 26.2 13.8 134 270-421 91-239 (337)
459 TIGR01496 DHPS dihydropteroate 30.8 1E+02 0.0022 30.7 5.6 54 114-170 26-87 (257)
460 PRK12737 gatY tagatose-bisphos 30.8 5.1E+02 0.011 26.4 10.7 127 295-429 63-201 (284)
461 cd03332 LMO_FMN L-Lactate 2-mo 30.7 1.4E+02 0.003 31.8 6.8 91 270-367 264-373 (383)
462 PLN02493 probable peroxisomal 30.5 4.5E+02 0.0097 27.9 10.5 91 291-406 212-308 (367)
463 KOG2947 Carbohydrate kinase [C 30.4 1.3E+02 0.0028 30.5 6.0 104 261-371 116-226 (308)
464 PRK10558 alpha-dehydro-beta-de 30.4 3.6E+02 0.0077 26.9 9.4 87 298-406 10-98 (256)
465 PRK08328 hypothetical protein; 30.2 2.7E+02 0.0059 27.0 8.4 72 298-380 87-159 (231)
466 TIGR02311 HpaI 2,4-dihydroxyhe 30.2 3.9E+02 0.0085 26.4 9.6 87 298-406 3-91 (249)
467 PRK08649 inosine 5-monophospha 30.1 4.9E+02 0.011 27.5 10.8 84 309-408 132-217 (368)
468 PRK08762 molybdopterin biosynt 30.0 2.5E+02 0.0054 29.3 8.6 65 296-371 192-256 (376)
469 PF01487 DHquinase_I: Type I 3 29.8 2.4E+02 0.0051 27.0 7.8 69 98-167 111-186 (224)
470 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.7 5.7E+02 0.012 25.5 15.4 152 264-429 17-191 (275)
471 TIGR01304 IMP_DH_rel_2 IMP deh 29.4 98 0.0021 32.7 5.4 66 270-339 199-286 (369)
472 PRK14852 hypothetical protein; 29.2 2E+02 0.0044 34.3 8.4 68 296-372 389-456 (989)
473 cd00377 ICL_PEPM Members of th 29.2 5.6E+02 0.012 25.1 14.1 65 267-337 160-226 (243)
474 cd00957 Transaldolase_TalAB Tr 29.1 42 0.00091 34.6 2.6 19 276-295 165-183 (313)
475 PF00218 IGPS: Indole-3-glycer 28.9 6E+02 0.013 25.4 11.1 131 270-422 121-254 (254)
476 PRK05269 transaldolase B; Prov 28.8 28 0.00061 36.0 1.3 50 275-330 166-236 (318)
477 cd03316 MR_like Mandelate race 28.8 3.2E+02 0.0069 27.9 9.1 63 99-165 125-196 (357)
478 PRK06978 nicotinate-nucleotide 28.8 1.1E+02 0.0024 31.3 5.6 61 270-338 215-278 (294)
479 PRK07688 thiamine/molybdopteri 28.8 2.6E+02 0.0056 29.0 8.4 64 297-371 84-147 (339)
480 PRK09196 fructose-1,6-bisphosp 28.7 5.5E+02 0.012 27.0 10.7 138 292-429 59-224 (347)
481 PF01113 DapB_N: Dihydrodipico 28.6 3.4E+02 0.0074 23.6 8.0 40 322-372 59-98 (124)
482 cd04743 NPD_PKS 2-Nitropropane 28.6 6.9E+02 0.015 26.0 12.4 114 270-405 72-201 (320)
483 TIGR00259 thylakoid_BtpA membr 28.6 2.4E+02 0.0052 28.4 7.8 72 265-339 154-229 (257)
484 PF09347 DUF1989: Domain of un 28.3 1.4E+02 0.003 28.0 5.7 55 178-232 11-79 (166)
485 PF00150 Cellulase: Cellulase 28.3 59 0.0013 31.3 3.4 53 112-168 22-85 (281)
486 COG0673 MviM Predicted dehydro 28.2 1.4E+02 0.0031 29.8 6.2 89 319-430 54-144 (342)
487 PF01408 GFO_IDH_MocA: Oxidore 28.1 2.6E+02 0.0056 23.2 7.0 59 320-397 50-110 (120)
488 TIGR01361 DAHP_synth_Bsub phos 28.1 5.3E+02 0.011 25.7 10.2 37 362-405 191-228 (260)
489 TIGR00737 nifR3_yhdG putative 28.1 6.4E+02 0.014 25.5 13.9 124 267-406 75-222 (319)
490 TIGR03249 KdgD 5-dehydro-4-deo 28.0 4.6E+02 0.01 26.3 9.9 41 389-429 89-129 (296)
491 cd08579 GDPD_memb_like Glycero 27.9 3.5E+02 0.0075 25.6 8.6 42 351-405 176-217 (220)
492 PLN02535 glycolate oxidase 27.8 7.5E+02 0.016 26.2 12.6 98 291-411 211-312 (364)
493 PRK10528 multifunctional acyl- 27.6 1.2E+02 0.0027 28.1 5.3 53 319-371 58-114 (191)
494 cd07943 DRE_TIM_HOA 4-hydroxy- 27.6 6E+02 0.013 25.0 16.7 147 265-429 19-183 (263)
495 PRK06806 fructose-bisphosphate 27.5 2.7E+02 0.0059 28.2 8.1 99 316-429 29-127 (281)
496 PF04472 DUF552: Protein of un 27.3 2.1E+02 0.0046 22.7 5.9 43 112-155 10-52 (73)
497 PRK07455 keto-hydroxyglutarate 27.3 4.7E+02 0.01 24.6 9.3 108 266-405 22-131 (187)
498 PRK08223 hypothetical protein; 27.1 3E+02 0.0064 28.2 8.2 66 296-371 84-150 (287)
499 cd03129 GAT1_Peptidase_E_like 27.1 2E+02 0.0044 27.2 6.8 89 279-369 28-118 (210)
500 cd02810 DHOD_DHPD_FMN Dihydroo 27.1 6.2E+02 0.013 25.0 12.2 49 351-407 147-197 (289)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=4.8e-107 Score=856.45 Aligned_cols=335 Identities=52% Similarity=0.797 Sum_probs=324.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (453)
Q Consensus 98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~ 177 (453)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||+|||||+|.+.+
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEeecCCC--CccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccccee
Q 012928 178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL 253 (453)
Q Consensus 178 --~i~L~~G~~v~lt~~~~~~--~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgV 253 (453)
++.|++||+|+|+.+...+ +.+.++++|++|+++|++||.||+|||.|.|+|.+++++.++|+|.+||.|+++|||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999864334 357899999999999999999999999999999999999999999999999999999
Q ss_pred ec-------CCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC--CceEEEEecChhhhccH
Q 012928 254 NV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNL 324 (453)
Q Consensus 254 nl-------p~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~--~i~IIakIET~~gv~Nl 324 (453)
|+ |++.+++|.||+||++||+|++++++|||++|||++++||..+|++|.+.+. +++||||||+++|++|+
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998764 79999999999999999
Q ss_pred HHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE
Q 012928 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (453)
Q Consensus 325 deI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (453)
+||++++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||.||+||+|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM 342 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 342 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCCCCHHHHHHHHHHHHHHHhcCC
Q 012928 405 LSGETAHGKFPLKAVKVMHTVALRTESSL 433 (453)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (453)
||+|||+|+||+|||++|++||++||+.+
T Consensus 343 LSgETA~G~yPveaV~~m~~I~~~aE~~~ 371 (509)
T PLN02762 343 LSGESAMGLYPEKALSVLRSVSLRMELWS 371 (509)
T ss_pred EcchhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999864
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=1.7e-106 Score=852.05 Aligned_cols=343 Identities=42% Similarity=0.682 Sum_probs=330.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCC
Q 012928 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (453)
Q Consensus 96 ~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l 175 (453)
..+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++..+++++||+||+|||||+|.+
T Consensus 35 ~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~ 114 (513)
T PTZ00066 35 LRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFL 114 (513)
T ss_pred ccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeeccc
Confidence 34799999999999999999999999999999999999999999999999999999996339999999999999999999
Q ss_pred CC--ceeecCCCEEEEEee-cCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccce
Q 012928 176 PQ--PIILKEGQEFNFTIK-RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (453)
Q Consensus 176 ~~--~i~L~~G~~v~lt~~-~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~Kg 252 (453)
++ ++.|++||.|+|+.+ ...++++.++++|++|++++++||+||+|||+|.|+|.+++++.++|+|++||.|+++||
T Consensus 115 ~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kg 194 (513)
T PTZ00066 115 KNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKN 194 (513)
T ss_pred CCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcc
Confidence 75 699999999999987 345677899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccCCCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc
Q 012928 253 LNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS 331 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s 331 (453)
||+||+.+++|.||++|++|| +|++++|+|||++|||++++||.++|++|++.+.+++|||||||++|++||+||++++
T Consensus 195 vnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~s 274 (513)
T PTZ00066 195 MNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAES 274 (513)
T ss_pred cccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhc
Confidence 999999999999999999998 8999999999999999999999999999999888999999999999999999999999
Q ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC
Q 012928 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 332 DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (453)
|||||||||||+|+|+++||.+||+|+++|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+|||+
T Consensus 275 DGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~ 354 (513)
T PTZ00066 275 DGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETAN 354 (513)
T ss_pred CEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 012928 412 GKFPLKAVKVMHTVALRTESSLPVSIT 438 (453)
Q Consensus 412 G~yP~eaV~~m~~I~~~aE~~~~~~~~ 438 (453)
|+||+|||++|++||++||+.++|...
T Consensus 355 G~yPveaV~~m~~I~~~aE~~~~~~~~ 381 (513)
T PTZ00066 355 GKFPVEAVNIMAKICFEAETCIDYRVL 381 (513)
T ss_pred CcCHHHHHHHHHHHHHHHhhccchHHh
Confidence 999999999999999999987665433
No 3
>PLN02623 pyruvate kinase
Probab=100.00 E-value=5.8e-106 Score=855.02 Aligned_cols=384 Identities=81% Similarity=1.168 Sum_probs=369.2
Q ss_pred ccceeeeeeccCCCCccchhhhhhhhcccccCCCCCCCCCccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEe
Q 012928 51 RFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARL 130 (453)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRi 130 (453)
+.+...++++|+|++ .+|+++..+.+..++....+..++|+.|..+|||||||||||+|+++|+|++|+++|||||||
T Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~Rl 141 (581)
T PLN02623 64 SQETEVIPVSPEDGG--ANFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARL 141 (581)
T ss_pred ccCcceeeccccccc--cccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 444567889999998 678888888888887777778899999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCCceeecCCCEEEEEeecCCCCccEEEeccccccc
Q 012928 131 NMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVN 210 (453)
Q Consensus 131 NfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~ 210 (453)
|||||++++|+++++++|+++++.++++++|++||+|||||+|.+++++.|++||+|+|+.+...++++.++++|++|++
T Consensus 142 NfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~ 221 (581)
T PLN02623 142 NMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVN 221 (581)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHh
Confidence 99999999999999999999999766999999999999999999988999999999999988767888899999999999
Q ss_pred ccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEecccc
Q 012928 211 DVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVK 290 (453)
Q Consensus 211 ~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~ 290 (453)
++++||+||+|||+|.|+|++++++.++|+|++||.|+++||||+||+.+++|.||+||++||+|++++++|||++|||+
T Consensus 222 ~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr 301 (581)
T PLN02623 222 DVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVK 301 (581)
T ss_pred hCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
+++||.++++|+.+.|.++.||+||||++||+|++||++.+|||||||||||+++|+++|+.+|++|+++|+++|||+++
T Consensus 302 ~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 302 DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 012928 371 ATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (453)
Q Consensus 371 aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (453)
||||||||+.++.|||||++|++|++.+|+|++||++||+.|+||+|||++|++||.+||+.+++.
T Consensus 382 aTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~ 447 (581)
T PLN02623 382 ATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEG 447 (581)
T ss_pred ECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999876554
No 4
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=3.6e-107 Score=830.49 Aligned_cols=339 Identities=49% Similarity=0.795 Sum_probs=309.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (453)
Q Consensus 98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~ 177 (453)
||||||||||||+|+++++|++|+++||||||||||||++++|+++++++|++.++++ ++++|++||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 6999999999999999999999999999999999999999999999999999999998 999999999999999999976
Q ss_pred ---ceeecCCCEEEEEeecC---CCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCe-EEEEEeeCcEeccc
Q 012928 178 ---PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDL-VKCIVVDGGELKSR 250 (453)
Q Consensus 178 ---~i~L~~G~~v~lt~~~~---~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~-v~~~V~ngG~L~s~ 250 (453)
++.|++||+|+|+.+.. .+++..|++||++|+++|++||+||+|||.|.|+|++++++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 69999999999998854 356789999999999999999999999999999999999999 99999999999999
Q ss_pred ceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh
Q 012928 251 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 251 KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
||||+|++.+++|.||++|++||+|++++|+|+|++|||++++||.+++++|.+.+.+++|||||||++|++||+||+.+
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
+|||||||||||+|+|+++|+.+||+|++.|+++|||||+||||||||+++|.|||||++|||||+.+|+||+|||+|||
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETA 319 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHH
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 012928 411 HGKFPLKAVKVMHTVALRTESSLPVSI 437 (453)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~aE~~~~~~~ 437 (453)
+|+||+|||++|++|+++||+.++|.+
T Consensus 320 ~G~~p~~~v~~~~~i~~~~E~~~~~~~ 346 (348)
T PF00224_consen 320 IGKYPVEAVKTMARIIREAEKYLDYRN 346 (348)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHTS-HHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999988754
No 5
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-106 Score=840.88 Aligned_cols=339 Identities=50% Similarity=0.790 Sum_probs=328.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCC
Q 012928 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (453)
Q Consensus 96 ~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l 175 (453)
.++|||||||||||+|+++++|++|+++||||||||||||++++|++.++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 358999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-ceeecCCCEEEEEeecC--CCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccce
Q 012928 176 PQ-PIILKEGQEFNFTIKRG--VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (453)
Q Consensus 176 ~~-~i~L~~G~~v~lt~~~~--~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~Kg 252 (453)
.+ .+.|++|++|+|+.+.. .++.+.++++|++|+++|++|++||+|||+|.|+|.+++++.++|+|.|||.|+++||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 76 69999999999998865 3456899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEEEEecChhhhccHHHHHhhc
Q 012928 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISAS 331 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~IIakIET~~gv~NldeI~~~s 331 (453)
||+||..+.+|+||+||++||+|++++|+|||++|||++++|+.++|++|.+.+.. ++||||||+++||+|||||+++|
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999887654 99999999999999999999999
Q ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC
Q 012928 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 332 DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (453)
||||+||||||+|+|+++||.+||+|++.|+.+|||||+||||||||+.+|.|||||++|||||+.||+|++|||+|||.
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~ 320 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC
Q 012928 412 GKFPLKAVKVMHTVALRTESSLPV 435 (453)
Q Consensus 412 G~yP~eaV~~m~~I~~~aE~~~~~ 435 (453)
|+||+|||++|++||.++|+.+++
T Consensus 321 G~yPveaV~~M~~I~~~aE~~~~~ 344 (477)
T COG0469 321 GKYPVEAVATMARIAKEAEKELPD 344 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999998873
No 6
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=2.2e-105 Score=813.47 Aligned_cols=331 Identities=38% Similarity=0.671 Sum_probs=320.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC-c
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-P 178 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~-~ 178 (453)
+++|||||||+|+++++|++|+++||||||||||||++++|.++++++|++++ +++||+||+|||||||.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~-----~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD-----SIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh-----hcceeecCCCCcceecccCCCc
Confidence 68999999999999999999999999999999999999999999999999863 48899999999999999976 6
Q ss_pred eeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecCCC
Q 012928 179 IILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGK 258 (453)
Q Consensus 179 i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp~~ 258 (453)
+.|++|++++|+.+...++.+.++++|++|++.+++||.||+|||+|.|+|++++++.+.|+|++||.|+++||||+|++
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999988666778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhcCEEEEe
Q 012928 259 SANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVA 337 (453)
Q Consensus 259 ~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~sDgImIg 337 (453)
.+++|.||++|++||+|++++++|||++|||++++||.++|++|.+.| .+++|||||||++|++||+||++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999875 4899999999999999999999999999999
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHH
Q 012928 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 417 (453)
Q Consensus 338 RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~e 417 (453)
|||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+|||+|+||++
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPve 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIE 316 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 012928 418 AVKVMHTVALRTESSLPV 435 (453)
Q Consensus 418 aV~~m~~I~~~aE~~~~~ 435 (453)
||++|++||++||+..+.
T Consensus 317 aV~~m~~I~~~aE~~~~~ 334 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999999965443
No 7
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=2.9e-105 Score=843.30 Aligned_cols=343 Identities=43% Similarity=0.666 Sum_probs=329.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCC
Q 012928 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (453)
Q Consensus 96 ~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l 175 (453)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||+|||||+|.+
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~ 96 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFL 96 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceecccc
Confidence 358899999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC--ceeecCCCEEEEEeec-CCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEe--CCeEEEEEeeCcEeccc
Q 012928 176 PQ--PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSR 250 (453)
Q Consensus 176 ~~--~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~--~~~v~~~V~ngG~L~s~ 250 (453)
++ ++.|++||.++|+.+. ..++++.|+++|++|++.+++||+||+|||+|.|+|.+++ ++.++|+|.+||.|+++
T Consensus 97 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~ 176 (511)
T PLN02461 97 KDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGER 176 (511)
T ss_pred CCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCC
Confidence 75 5999999999999873 4467789999999999999999999999999999999987 68999999999999999
Q ss_pred ceeecCCCccCCCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh
Q 012928 251 RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (453)
Q Consensus 251 KgVnlp~~~~~lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~ 329 (453)
||||+||+.+++|.||+||++|| +|++++++|||++|||++++||.++|++|.+.+.+++|||||||++|++||+||++
T Consensus 177 Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~ 256 (511)
T PLN02461 177 KNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256 (511)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999998 79999999999999999999999999999988889999999999999999999999
Q ss_pred hcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 330 ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 330 ~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+||
T Consensus 257 ~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ET 336 (511)
T PLN02461 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 336 (511)
T ss_pred hcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCCCCc
Q 012928 410 AHGKFPLKAVKVMHTVALRTESSLPVSITP 439 (453)
Q Consensus 410 A~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 439 (453)
|+|+||+|||++|++||++||+.+++.+.|
T Consensus 337 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~ 366 (511)
T PLN02461 337 AAGAYPELAVKTMARICREAEASLDYGALF 366 (511)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccchhhhh
Confidence 999999999999999999999977665443
No 8
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=6.5e-105 Score=835.99 Aligned_cols=337 Identities=45% Similarity=0.750 Sum_probs=326.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (453)
Q Consensus 98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~ 177 (453)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|+++++++ ++++|++||+|||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 5799999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEeec-CCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceee
Q 012928 178 --PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (453)
Q Consensus 178 --~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVn 254 (453)
++.|++||.++|+.+. ..++.+.++++|++|++.+++||.||+|||+|.|+|.+++++.++|+|++||.|+++||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 5999999999999874 3466789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhcCE
Q 012928 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDG 333 (453)
Q Consensus 255 lp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~sDg 333 (453)
+||+.+++|.||+||++||+|++++|+|||++|||++++||.++++|+.+.| .++.|||||||++|++|++||++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999887 589999999999999999999999999
Q ss_pred EEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCC
Q 012928 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (453)
Q Consensus 334 ImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (453)
|||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||+++|.|||||++||||||.||+||+|||+|||+|+
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 012928 414 FPLKAVKVMHTVALRTESSLPV 435 (453)
Q Consensus 414 yP~eaV~~m~~I~~~aE~~~~~ 435 (453)
||+|||++|++||+++|+.+++
T Consensus 320 yPveaV~~m~~I~~~~E~~~~~ 341 (470)
T PRK09206 320 YPLEAVSIMATICERTDRVMNS 341 (470)
T ss_pred CHHHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999986544
No 9
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.8e-104 Score=832.21 Aligned_cols=336 Identities=42% Similarity=0.690 Sum_probs=326.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCC
Q 012928 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (453)
Q Consensus 97 ~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~ 176 (453)
++|||||||||||+|+++++|++|+++||||||||||||++++|+++++++|+++++++ ++++|++||+|||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-ceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeec
Q 012928 177 Q-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (453)
Q Consensus 177 ~-~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnl 255 (453)
. ++.|++||+|+|+.+...++++.|+++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 699999999999988666788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEE
Q 012928 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM 335 (453)
Q Consensus 256 p~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgIm 335 (453)
||+.+++|.||++|++||+|++++|+|||++|||++++||..+|+++++ ++.|||||||++|++|++||++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~~---~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIGG---RVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhhh---cCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 9999999999999999999999999999999999999999999999943 7899999999999999999999999999
Q ss_pred EeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCH
Q 012928 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (453)
Q Consensus 336 IgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (453)
|||||||+++|+++|+.+|++|+++|+++|||+|+||||||||+++|.|||||++||||||.||+||+|||+|||+|+||
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYP 318 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 012928 416 LKAVKVMHTVALRTESSLPVS 436 (453)
Q Consensus 416 ~eaV~~m~~I~~~aE~~~~~~ 436 (453)
+|||++|++||+++|+.+++.
T Consensus 319 veaV~~m~~I~~~aE~~~~~~ 339 (476)
T PRK06247 319 VEAVRTMARIIRQVERDPTYP 339 (476)
T ss_pred HHHHHHHHHHHHHHhhccchh
Confidence 999999999999999876553
No 10
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.6e-103 Score=830.65 Aligned_cols=336 Identities=33% Similarity=0.555 Sum_probs=323.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC-
Q 012928 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (453)
Q Consensus 99 r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~- 177 (453)
|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||+|||||+|.+++
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKTEK 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecCCC
Confidence 459999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred ceeecCCCEEEEEeecC-CCCccEEEecccccccccccCCEEEEeCC--------eeEEEEEEEeCCeEEEEEeeCcEec
Q 012928 178 PIILKEGQEFNFTIKRG-VSTEDTVSVNYDDFVNDVEVGDILLVDGG--------MMSLAVKSKTKDLVKCIVVDGGELK 248 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~~-~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG--------~I~L~V~ev~~~~v~~~V~ngG~L~ 248 (453)
++.|++||+|+|+.+.. .++.+.|+++|++|+++|++||+||+||| +|.|+|++++++.++|+|++||+|+
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~ 186 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLA 186 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEEC
Confidence 69999999999998743 56778999999999999999999999987 8999999999999999999999999
Q ss_pred cc-ceeecCCCccCCCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC-CceEEEEecChhhhccHH
Q 012928 249 SR-RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLH 325 (453)
Q Consensus 249 s~-KgVnlp~~~~~lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~-~i~IIakIET~~gv~Nld 325 (453)
++ ||||+||+.+++|.||+||++|| .|++++++|||++|||++++||.++|++|.+.|. +++|||||||++|++||+
T Consensus 187 s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~ 266 (526)
T PLN02765 187 GSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFD 266 (526)
T ss_pred CCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 95 89999999999999999999999 6999999999999999999999999999998775 899999999999999999
Q ss_pred HHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 326 SIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 326 eI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
||++++|||||||||||+|+|+++||.+||+|++.|+++|||||+ |||||||+++|.|||||++||||||.||+||+||
T Consensus 267 eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavML 345 (526)
T PLN02765 267 EILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILL 345 (526)
T ss_pred HHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEe
Confidence 999999999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred cCcccCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 012928 406 SGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (453)
Q Consensus 406 s~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (453)
|+|||+|+||+|||++|++||++||+.+++.
T Consensus 346 SgETA~G~yPveaV~~m~~I~~~aE~~~~~~ 376 (526)
T PLN02765 346 GAETLRGLYPVETISTVGRICAEAEKVFNQD 376 (526)
T ss_pred cchhcCCCCHHHHHHHHHHHHHHHHhhcchh
Confidence 9999999999999999999999999876553
No 11
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.6e-103 Score=829.27 Aligned_cols=339 Identities=48% Similarity=0.752 Sum_probs=329.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC
Q 012928 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (453)
Q Consensus 98 ~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~ 177 (453)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||+|||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 4899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEeec--CCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCC-eEEEEEeeCcEecccce
Q 012928 178 --PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKD-LVKCIVVDGGELKSRRH 252 (453)
Q Consensus 178 --~i~L~~G~~v~lt~~~--~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~-~v~~~V~ngG~L~s~Kg 252 (453)
++.|++||+|+|+.+. ..++.+.|+++|++|++.+++||.||+|||+|.|+|.+++++ .++|+|++||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 5999999999999875 457778999999999999999999999999999999999988 99999999999999999
Q ss_pred eecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcC
Q 012928 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD 332 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sD 332 (453)
||+|+..+++|.||+||++||+|++++|+|||++|||++++||.++|+|+.+.+.++.+||||||++|++|++||++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 333 gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
||||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||+++|.|||||++||||||.||+||+|||+|||+|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCC
Q 012928 413 KFPLKAVKVMHTVALRTESSLPVSI 437 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE~~~~~~~ 437 (453)
+||+|||++|++||++||+.+++..
T Consensus 320 ~yPveaV~~m~~I~~~aE~~~~~~~ 344 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRV 344 (480)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999998765543
No 12
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=3.9e-103 Score=842.83 Aligned_cols=340 Identities=44% Similarity=0.739 Sum_probs=329.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCC
Q 012928 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (453)
Q Consensus 96 ~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l 175 (453)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||+|||||+|.+
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~ 83 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRF 83 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceecccc
Confidence 347899999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-ceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEe--CCeEEEEEeeCcEecccce
Q 012928 176 PQ-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSRRH 252 (453)
Q Consensus 176 ~~-~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~--~~~v~~~V~ngG~L~s~Kg 252 (453)
++ ++.|++||+|+|+.+...++++.|+++|++|++++++||.||+|||+|.|+|.+++ ++.++|+|++||.|+++||
T Consensus 84 ~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kg 163 (590)
T PRK06354 84 EDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKG 163 (590)
T ss_pred CCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCc
Confidence 75 69999999999998866678889999999999999999999999999999999988 8999999999999999999
Q ss_pred eecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHh-cCCCceEEEEecChhhhccHHHHHhhc
Q 012928 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-CNADIHVIVKIESADSIPNLHSIISAS 331 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~-~~~~i~IIakIET~~gv~NldeI~~~s 331 (453)
||+|++.+++|.||+||++||+|++++++|||++|||++++||.++++|+.+ .+.++.|||||||++|++|++||++++
T Consensus 164 vn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~ 243 (590)
T PRK06354 164 VNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC 243 (590)
T ss_pred ccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999954 578999999999999999999999999
Q ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC
Q 012928 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 332 DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (453)
|||||||||||+++|.++|+.+|++|+++|+++|||||+||||||||+++|.|||||++||||||+||+||+|||+|||+
T Consensus 244 DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~ 323 (590)
T PRK06354 244 DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAA 323 (590)
T ss_pred CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCC
Q 012928 412 GKFPLKAVKVMHTVALRTESSLPVS 436 (453)
Q Consensus 412 G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (453)
|+||+|||++|++||++||+.++|.
T Consensus 324 G~yPveaV~~m~~I~~~aE~~~~~~ 348 (590)
T PRK06354 324 GDYPVEAVQTMATIAVRIEKDLPYR 348 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999976654
No 13
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=5.5e-102 Score=814.95 Aligned_cols=338 Identities=47% Similarity=0.741 Sum_probs=329.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCC
Q 012928 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (453)
Q Consensus 97 ~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~ 176 (453)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++|++||+|||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 46899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-ceeecCCCEEEEEeec-CCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceee
Q 012928 177 Q-PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (453)
Q Consensus 177 ~-~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVn 254 (453)
+ ++.|++||+|+|+.++ ..++++.|++||++|++++++||.||+|||+|.|+|++++++.++|+|++||+|+++||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 6 6999999999999883 4577889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC-CceEEEEecChhhhccHHHHHhhcCE
Q 012928 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDG 333 (453)
Q Consensus 255 lp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~-~i~IIakIET~~gv~NldeI~~~sDg 333 (453)
+||+.+++|.||++|.++|+|++++|+|+|++|||++++|++++++|+.+.|. ++.|||||||++|++|++||++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred EEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCC
Q 012928 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (453)
Q Consensus 334 ImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (453)
|||||||||+++|.++++.+|++|+++|+++|||+|+||||||||+++|.|||||++|||||+.||+||+|||+|||+|+
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC
Q 012928 414 FPLKAVKVMHTVALRTESSLPV 435 (453)
Q Consensus 414 yP~eaV~~m~~I~~~aE~~~~~ 435 (453)
||+|||++|++||.+||+.+++
T Consensus 321 yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 321 YPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred CHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999987654
No 14
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=4.7e-96 Score=779.22 Aligned_cols=342 Identities=30% Similarity=0.476 Sum_probs=325.9
Q ss_pred CCCCccCCCCCCCCcEEEEecC-CCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeec
Q 012928 87 TPGKGVVGPNARRKTKIVCTIG-PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (453)
Q Consensus 87 ~~~~~~~~~~~~r~TKIi~TiG-Pss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDL 165 (453)
++..+|++++.+|+|||||||| |+++++++|++|+++||||||||||||++++|+++|++||+++++++ ++|+|++||
T Consensus 127 ~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~g-r~~~I~mDL 205 (608)
T PRK14725 127 HAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELG-RRCRIAMDL 205 (608)
T ss_pred HHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 6677999999999999999999 69999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCeeeecCCCC--------------------------------------------------------------------
Q 012928 166 KGPEVRSGDVPQ-------------------------------------------------------------------- 177 (453)
Q Consensus 166 kGPkIRtG~l~~-------------------------------------------------------------------- 177 (453)
+|||||||.+..
T Consensus 206 ~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R 285 (608)
T PRK14725 206 AGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKR 285 (608)
T ss_pred CCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccce
Confidence 999999999853
Q ss_pred ----------------------------------------------ceeecCCCEEEEEeecCCC-----Ccc--EEEec
Q 012928 178 ----------------------------------------------PIILKEGQEFNFTIKRGVS-----TED--TVSVN 204 (453)
Q Consensus 178 ----------------------------------------------~i~L~~G~~v~lt~~~~~~-----~~~--~I~v~ 204 (453)
++.|++||+++|+.+...+ +.. .|+|+
T Consensus 286 ~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t 365 (608)
T PRK14725 286 KLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCT 365 (608)
T ss_pred eeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEec
Confidence 3789999999999874332 344 89999
Q ss_pred ccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEee----CcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcC
Q 012928 205 YDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD----GGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQ 280 (453)
Q Consensus 205 ~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~n----gG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~g 280 (453)
|+++++++++||.||+|||+|.|+|++++++.++|+|++ ||+|+++||||+|++.+++|.||+||++||.|++++
T Consensus 366 ~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~~- 444 (608)
T PRK14725 366 LPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVAKH- 444 (608)
T ss_pred hHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhc-----CEEEEeCCCccccCCCCCHHHHH
Q 012928 281 VDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISAS-----DGAMVARGDLGAELPIEDVPLLQ 354 (453)
Q Consensus 281 vd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~s-----DgImIgRGDLg~elg~e~v~~aq 354 (453)
+|+|++|||++++||..++++|.+.+ .++.|||||||++|++||+||+.++ |||||||||||+|+|+++|+.+|
T Consensus 445 vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQ 524 (608)
T PRK14725 445 ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQ 524 (608)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHH
Confidence 99999999999999999999998876 4899999999999999999999986 99999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCCC
Q 012928 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (453)
Q Consensus 355 k~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (453)
|+|++.|+++||||||||||||||+++|.|||||++|+|||+ |+|||||| +|+||+|||++|++|++++|++..
T Consensus 525 k~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~~~ 598 (608)
T PRK14725 525 EEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEHQR 598 (608)
T ss_pred HHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999 99999998 999999999999999999997764
Q ss_pred CC
Q 012928 435 VS 436 (453)
Q Consensus 435 ~~ 436 (453)
.+
T Consensus 599 Kk 600 (608)
T PRK14725 599 KK 600 (608)
T ss_pred cc
Confidence 43
No 15
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=4.3e-95 Score=766.84 Aligned_cols=336 Identities=50% Similarity=0.821 Sum_probs=326.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC-
Q 012928 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (453)
Q Consensus 99 r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~- 177 (453)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++|++||+|||||+|.+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999976
Q ss_pred ceeecCCCEEEEEeec--CCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeec
Q 012928 178 PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~--~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnl 255 (453)
++.|++||.|+|+.+. ..++.+.|+++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999874 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhcCEE
Q 012928 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGA 334 (453)
Q Consensus 256 p~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~sDgI 334 (453)
||+.+++|.||++|.+||+++++.|+|+|++|||++++||..+++++.+.+ .++.||+||||++|++|++||++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998877 5899999999999999999999999999
Q ss_pred EEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC
Q 012928 335 MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (453)
Q Consensus 335 mIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (453)
|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+.|+|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~y 319 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKY 319 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 012928 415 PLKAVKVMHTVALRTESSLPV 435 (453)
Q Consensus 415 P~eaV~~m~~I~~~aE~~~~~ 435 (453)
|+|||++|++||+++|+..++
T Consensus 320 P~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 320 PVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 999999999999999987554
No 16
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=9.5e-95 Score=762.92 Aligned_cols=340 Identities=28% Similarity=0.457 Sum_probs=324.4
Q ss_pred CCCCccCCCCCCCCcEEEEec-CCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeec
Q 012928 87 TPGKGVVGPNARRKTKIVCTI-GPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (453)
Q Consensus 87 ~~~~~~~~~~~~r~TKIi~Ti-GPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDL 165 (453)
++..+|++++.+|+||||||| ||+++++++|++|+++||||||||||||++++|+++|+++|+++++++ ++|+|++||
T Consensus 121 ~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g-~~i~Il~DL 199 (493)
T PRK08187 121 HTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATG-RRCKILMDL 199 (493)
T ss_pred HHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 566799999999999999999 599999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCeeeecCCCC---ceeecCCCEEEEEeecCCC----CccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEE
Q 012928 166 KGPEVRSGDVPQ---PIILKEGQEFNFTIKRGVS----TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVK 238 (453)
Q Consensus 166 kGPkIRtG~l~~---~i~L~~G~~v~lt~~~~~~----~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~ 238 (453)
+|||||||.+.+ ++.|++||.|+|+.+...+ +...|+++|++|+++|++||.||+|||+|.|+|++++++.+.
T Consensus 200 ~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~v~ 279 (493)
T PRK08187 200 AGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGGAL 279 (493)
T ss_pred CCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCEEE
Confidence 999999999975 4899999999999874332 456899999999999999999999999999999999999999
Q ss_pred EEEe----eCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC----CCce
Q 012928 239 CIVV----DGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN----ADIH 310 (453)
Q Consensus 239 ~~V~----ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~----~~i~ 310 (453)
|+|+ +||+|+++||||+|++.+++|.||++|.+||.|+++ ++|+|++|||++++||..++++|.+.+ .++.
T Consensus 280 ~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~ 358 (493)
T PRK08187 280 LEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLG 358 (493)
T ss_pred EEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCe
Confidence 9999 999999999999999999999999999999999998 699999999999999999999998765 4799
Q ss_pred EEEEecChhhhccHHHHHhhcC-----EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCc
Q 012928 311 VIVKIESADSIPNLHSIISASD-----GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (453)
Q Consensus 311 IIakIET~~gv~NldeI~~~sD-----gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Pt 385 (453)
||+||||++|++|++||+.++| |||||||||++|+|+++++.+|++|+.+|+++|||+||||||||||+++|.||
T Consensus 359 IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PT 438 (493)
T PRK08187 359 LVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPS 438 (493)
T ss_pred EEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCc
Confidence 9999999999999999998877 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCCC
Q 012928 386 RAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (453)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (453)
|||++||||+ +|+|||||| +|+||+|||++|++|+.++|++..
T Consensus 439 RAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~~ 481 (493)
T PRK08187 439 RAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQH 481 (493)
T ss_pred hHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999997 999999998 999999999999999999998743
No 17
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-95 Score=757.17 Aligned_cols=357 Identities=49% Similarity=0.743 Sum_probs=343.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeec
Q 012928 94 GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSG 173 (453)
Q Consensus 94 ~~~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG 173 (453)
.+...|+|||+||+||++++.|+|++|+++|||+||+|||||++++|+++++|+|++...++..+++|++||+|||+|||
T Consensus 16 ~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg 95 (501)
T KOG2323|consen 16 APKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTG 95 (501)
T ss_pred ccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeec
Confidence 45568899999999999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred CCCC--ceeecCCCEEEEEeecCCC--CccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecc
Q 012928 174 DVPQ--PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKS 249 (453)
Q Consensus 174 ~l~~--~i~L~~G~~v~lt~~~~~~--~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s 249 (453)
.+++ +++|++|+.++||++.... .++.+++||+++.++|++||.||+|||.+.+.|+++..+.++|+|.|+|.++|
T Consensus 96 ~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~~~~~~c~v~n~g~l~s 175 (501)
T KOG2323|consen 96 DLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVSKDEVTCRVENGGMLGS 175 (501)
T ss_pred ccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEEEeecCceEEEEecCccccc
Confidence 9986 8999999999999996443 35899999999999999999999999999999999988899999999999999
Q ss_pred cce-eecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHH
Q 012928 250 RRH-LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII 328 (453)
Q Consensus 250 ~Kg-Vnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~ 328 (453)
+|| +|+||+..++|.||++|++||+|++++++|+|++|||+.++|+.++|++|++.+.+++||+|||+++|+.|+|||+
T Consensus 176 ~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl 255 (501)
T KOG2323|consen 176 RKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEIL 255 (501)
T ss_pred ccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 329 SASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 329 ~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
.++||+|++|||||+|+|+|+++.+||.+|.+|+.+|||||+||||||||+.+|+|||||++||+|||+||+||+|||+|
T Consensus 256 ~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgE 335 (501)
T KOG2323|consen 256 IESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGE 335 (501)
T ss_pred HhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCCCCccchhhhhcccc
Q 012928 409 TAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKVRF 450 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 450 (453)
||.|+||++||++|+.||.+||+.+||.+++..+++..+..+
T Consensus 336 ta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~ 377 (501)
T KOG2323|consen 336 TAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPM 377 (501)
T ss_pred hhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999986655444
No 18
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=9.8e-94 Score=748.82 Aligned_cols=309 Identities=42% Similarity=0.675 Sum_probs=299.4
Q ss_pred CcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCC-ceeecCCCEEEEEeec---CCCCccE
Q 012928 125 MNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-PIILKEGQEFNFTIKR---GVSTEDT 200 (453)
Q Consensus 125 mnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~-~i~L~~G~~v~lt~~~---~~~~~~~ 200 (453)
|||||||||||++++|+++++++|+++++++ ++++||+||+|||||||.+++ ++.|++||+++|+.+. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999998 999999999999999999975 6999999999999873 3467789
Q ss_pred EEecccccccccccCCEEEEeCCeeEEEEEEEeC-CeEEEEEeeCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhc
Q 012928 201 VSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTK-DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDN 279 (453)
Q Consensus 201 I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~-~~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~ 279 (453)
|+++|++|++.+++||.||+|||+|.|+|.++++ +.++|+|++||.|+++||||+||+.+++|.+|++|.+||+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999985 699999999999999999999999999999999999999999999
Q ss_pred CCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHH
Q 012928 280 QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIR 359 (453)
Q Consensus 280 gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~ 359 (453)
|+|+|++|||++++|++++++++++.+.++.|||||||++||+|++||+..+|||||||||||+++|.++|+.+|++|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCCC
Q 012928 360 RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (453)
Q Consensus 360 ~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (453)
+|+++|||+|+||||||||+++|.|||||++||||||.||+||+|||+|||+|+||+|||++|++||++||+.++
T Consensus 240 ~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 314 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVN 314 (454)
T ss_pred HHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998653
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.68 E-value=9.1e-17 Score=158.56 Aligned_cols=133 Identities=26% Similarity=0.343 Sum_probs=113.7
Q ss_pred CCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHH--------------------------HHHHhcCCCceEEEEecCh
Q 012928 265 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKIESA 318 (453)
Q Consensus 265 ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~--------------------------~~L~~~~~~i~IIakIET~ 318 (453)
+...|...|+.+++.|+++|.+|+|+++++++++. +|++..|.++.++++|||+
T Consensus 76 vp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~ 155 (256)
T PRK10558 76 VPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQ 155 (256)
T ss_pred CCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCH
Confidence 34557788999999999999999999999999863 4677778899999999999
Q ss_pred hhhccHHHHHhh--cCEEEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHH
Q 012928 319 DSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390 (453)
Q Consensus 319 ~gv~NldeI~~~--sDgImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~ 390 (453)
+|++|++||+++ .|+++||++||+.++|. +++..+..+++.+|+++||++++. .+.| .
T Consensus 156 ~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~---------~~~~-----~ 221 (256)
T PRK10558 156 QGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL---------APVE-----A 221 (256)
T ss_pred HHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc---------CCCH-----H
Confidence 999999999987 89999999999999986 368889999999999999999863 2222 3
Q ss_pred HHHHHHHhCccEEEecCcccC
Q 012928 391 DIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 391 Dv~nav~~G~D~vmLs~ETA~ 411 (453)
+...++..|++.++++.++..
T Consensus 222 ~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 222 DARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred HHHHHHHcCCCEEEEchHHHH
Confidence 355788999999999877653
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.68 E-value=9.7e-17 Score=157.80 Aligned_cols=131 Identities=27% Similarity=0.321 Sum_probs=113.4
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHH--------------------------HHHHhcCCCceEEEEecChh
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKIESAD 319 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~--------------------------~~L~~~~~~i~IIakIET~~ 319 (453)
...|...|+.+++.|+++|.+|+|+++++.+++. +|++..|.++.++++|||++
T Consensus 70 p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~ 149 (249)
T TIGR03239 70 PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQK 149 (249)
T ss_pred CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHH
Confidence 4456788899999999999999999999999875 46677788999999999999
Q ss_pred hhccHHHHHhh--cCEEEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHH
Q 012928 320 SIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (453)
Q Consensus 320 gv~NldeI~~~--sDgImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~D 391 (453)
|++|++||+++ .|+++||++||+.++|. +++..+..+++.+|+++||++++. .+.| .+
T Consensus 150 av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~---------~~~~-----~~ 215 (249)
T TIGR03239 150 GVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL---------APVE-----AD 215 (249)
T ss_pred HHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc---------CCCH-----HH
Confidence 99999999988 89999999999999987 368889999999999999999873 2223 34
Q ss_pred HHHHHHhCccEEEecCccc
Q 012928 392 IAIAVREGADAVMLSGETA 410 (453)
Q Consensus 392 v~nav~~G~D~vmLs~ETA 410 (453)
...++..|++.++++.++.
T Consensus 216 ~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 216 ARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred HHHHHHcCCCEEEEhHHHH
Confidence 5688999999999987765
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.63 E-value=8e-16 Score=152.66 Aligned_cols=129 Identities=23% Similarity=0.287 Sum_probs=110.1
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHH---------------------------HHhcCCCceEEEEecChhh
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY---------------------------LKSCNADIHVIVKIESADS 320 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~---------------------------L~~~~~~i~IIakIET~~g 320 (453)
.|...|+.+++.|+++|.+|+|+|+++.+++.++ +...|.++.+|++|||++|
T Consensus 78 ~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a 157 (267)
T PRK10128 78 GSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTA 157 (267)
T ss_pred CCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHH
Confidence 3457788999999999999999999999977444 3445678999999999999
Q ss_pred hccHHHHHhh--cCEEEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHH
Q 012928 321 IPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI 392 (453)
Q Consensus 321 v~NldeI~~~--sDgImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv 392 (453)
++|++||+++ .|++++|++||+.++|+ +++..+.++++++|+++||++++. .+.| .+.
T Consensus 158 ~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~---------~~~~-----~~a 223 (267)
T PRK10128 158 LDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL---------AVDP-----DMA 223 (267)
T ss_pred HHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc---------CCCH-----HHH
Confidence 9999999988 79999999999999996 578899999999999999999863 2222 345
Q ss_pred HHHHHhCccEEEecCccc
Q 012928 393 AIAVREGADAVMLSGETA 410 (453)
Q Consensus 393 ~nav~~G~D~vmLs~ETA 410 (453)
..++..|++.+.++.++.
T Consensus 224 ~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 224 QKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHcCCcEEEEChHHH
Confidence 688899999999988865
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.1e-15 Score=143.89 Aligned_cols=133 Identities=27% Similarity=0.330 Sum_probs=114.1
Q ss_pred CCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHH---------------------------HHHHHhcCCCceEEEEec
Q 012928 264 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL---------------------------KDYLKSCNADIHVIVKIE 316 (453)
Q Consensus 264 ~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v---------------------------~~~L~~~~~~i~IIakIE 316 (453)
.++..+...|+.+++.|+..+.+|+|+|+++.+++ .+||..+|+++.+++|||
T Consensus 73 R~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiE 152 (255)
T COG3836 73 RPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIE 152 (255)
T ss_pred eCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEc
Confidence 44556778889999999999999999999998876 456778889999999999
Q ss_pred ChhhhccHHHHHhh--cCEEEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH
Q 012928 317 SADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (453)
Q Consensus 317 T~~gv~NldeI~~~--sDgImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE 388 (453)
|.+|++|||+|+++ .||||+|++||+.++|. ++|..+...++.+.+++||..++- ...|.
T Consensus 153 tr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil---------~~~p~--- 220 (255)
T COG3836 153 TRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGIL---------AADPA--- 220 (255)
T ss_pred cHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccc---------cCCHH---
Confidence 99999999999998 89999999999999998 578889999999999999998773 33343
Q ss_pred HHHHHHHHHhCccEEEecCccc
Q 012928 389 VSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA 410 (453)
+..+++..|+..+.+..+|.
T Consensus 221 --~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 221 --DARRYLALGATFVAVGSDTG 240 (255)
T ss_pred --HHHHHHHhCCeEEEEeccHH
Confidence 45588888998888877764
No 23
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.59 E-value=8.3e-16 Score=147.79 Aligned_cols=130 Identities=24% Similarity=0.263 Sum_probs=102.9
Q ss_pred HhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhc-------CCCceEEEEecChhhhccHHHHHhh--cCEEEEe
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA--SDGAMVA 337 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~-------~~~i~IIakIET~~gv~NldeI~~~--sDgImIg 337 (453)
..-.+||+ +++.|+|+|.+|+|+++++++.+.+++... +.++.++++|||++||+|++||++. .|++++|
T Consensus 72 ~~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G 150 (221)
T PF03328_consen 72 PHIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFG 150 (221)
T ss_dssp HHHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-
T ss_pred chhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeC
Confidence 34457788 899999999999999999999999998654 3568999999999999999999965 5899999
Q ss_pred CCCccccCCCC------CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH--HHHHHHHHHhCccEEEe
Q 012928 338 RGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (453)
Q Consensus 338 RGDLg~elg~e------~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vmL 405 (453)
++||+.++|.+ ++..+.++++.+|+++|++++-. ....+..++ ..++++++..|+|+-++
T Consensus 151 ~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~--------~~~~~~d~~~~~~~~~~~~~~G~dg~~~ 218 (221)
T PF03328_consen 151 PADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG--------VFPDFEDAEGLEAEGFRARALGFDGKLC 218 (221)
T ss_dssp HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE--------EESSSSHHHHHHHHHHHCCEEEEHHCCC
T ss_pred cHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE--------eeCCHHHHHHHHHHHHHHHHHccccccc
Confidence 99999999984 58889999999999999976542 123344444 56678888888877554
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.57 E-value=5.3e-15 Score=145.50 Aligned_cols=128 Identities=21% Similarity=0.261 Sum_probs=107.7
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHh---------------------------cCCCceEEEEecChhhh
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS---------------------------CNADIHVIVKIESADSI 321 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~---------------------------~~~~i~IIakIET~~gv 321 (453)
|..+|+.+++.|+|+|.+|+|+|+++++++.++++. .|.++.++++|||++|+
T Consensus 73 ~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av 152 (249)
T TIGR02311 73 DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREAL 152 (249)
T ss_pred CHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHH
Confidence 345889999999999999999999999998777642 12357899999999999
Q ss_pred ccHHHHHhh--cCEEEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHH
Q 012928 322 PNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 393 (453)
Q Consensus 322 ~NldeI~~~--sDgImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~ 393 (453)
+|+++|+++ .|++++|++||+.++|. +++..+.+++..+|+.+||+.++. .+.| .+..
T Consensus 153 ~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~---------~~~~-----~~~~ 218 (249)
T TIGR02311 153 DNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGIL---------TADP-----KLAR 218 (249)
T ss_pred HHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeec---------CCCH-----HHHH
Confidence 999999987 79999999999999997 356778889999999999999873 1223 3455
Q ss_pred HHHHhCccEEEecCccc
Q 012928 394 IAVREGADAVMLSGETA 410 (453)
Q Consensus 394 nav~~G~D~vmLs~ETA 410 (453)
.++..|++.++++.|+.
T Consensus 219 ~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 219 QYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHcCCCEEEEchHHH
Confidence 88899999999988765
No 25
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.35 E-value=5.6e-12 Score=126.55 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=117.5
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhc-------CCCceEEEEecChhhhccHHHHHhh---cCEEE
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA---SDGAM 335 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~-------~~~i~IIakIET~~gv~NldeI~~~---sDgIm 335 (453)
|++...||...++.|+++|.+|+|++++++..+.+++... +.++.++++|||++|+.|+++|++. .|+++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 4566788999999999999999999999999998887542 2468899999999999999999964 57999
Q ss_pred EeCCCccccCCCC------CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH--HHHHHHHHHhCccEEEecC
Q 012928 336 VARGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 336 IgRGDLg~elg~e------~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vmLs~ 407 (453)
+|+.||+.++|.. ++.+++.+++.+|+++|+++|-. ... .-...| ..+..++...|+++-+.-
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~-v~~-------~~~d~~~l~~~~~~~~~~Gf~Gk~~I- 221 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT-VYS-------DVNNEEGFLAEAQLIKQLGFDGKSLI- 221 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC-Ccc-------CcCCHHHHHHHHHHHHHcCCCceecc-
Confidence 9999999999872 58889999999999999998532 111 111111 445677888898887652
Q ss_pred cccCCCCHH-------------HHHHHHHHHHHHHhc
Q 012928 408 ETAHGKFPL-------------KAVKVMHTVALRTES 431 (453)
Q Consensus 408 ETA~G~yP~-------------eaV~~m~~I~~~aE~ 431 (453)
||- +-+++-++|+...|+
T Consensus 222 ------HP~Qi~~in~~f~Ps~~ei~~A~~i~~a~~~ 252 (288)
T TIGR01588 222 ------NPRQIELVHKVYAPTEKEIDKAIEVIAAAEE 252 (288)
T ss_pred ------CHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 342 457777777766554
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.29 E-value=1.9e-11 Score=137.52 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=117.5
Q ss_pred CCHhhHHHHHhhh-hcCCcE--EEeccccCHHHHHHHHHHHHhcC-----CCceEEEEecChhhhccHHHHHhhcCEEEE
Q 012928 265 ITDKDWEDIKFGV-DNQVDF--YAVSFVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISASDGAMV 336 (453)
Q Consensus 265 ltekD~~DI~~a~-~~gvd~--I~lSfV~sa~dv~~v~~~L~~~~-----~~i~IIakIET~~gv~NldeI~~~sDgImI 336 (453)
+-...++.|..++ +.|+.. |.+|||++++++..+++++...+ .++.++++|||+.|+.|+++|++++|+++|
T Consensus 611 lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisI 690 (782)
T TIGR01418 611 AFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSI 690 (782)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEE
Confidence 3344556667777 789888 99999999999999999886543 348999999999999999999999999999
Q ss_pred eCCCccc-cCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCc
Q 012928 337 ARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (453)
Q Consensus 337 gRGDLg~-elg~---------------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (453)
|++||+. .+|+ +.|..+.++++++|+++|||+.++.+|-. ..| ..+..++..|+
T Consensus 691 GtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~G~ 760 (782)
T TIGR01418 691 GSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEEGI 760 (782)
T ss_pred CchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHcCC
Confidence 9999997 4443 46888999999999999999998743210 012 33457788999
Q ss_pred cEEEecCcccCCCCHHHHHHHHHHHHHHHhc
Q 012928 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
+.+.++. +++-.++..++++|+
T Consensus 761 ~~ls~~~---------d~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 761 DSISLNP---------DAVLRTRLQVAEVEK 782 (782)
T ss_pred CEEEECc---------chHHHHHHHHHHhcC
Confidence 9999974 456667777777774
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.27 E-value=2.6e-11 Score=136.44 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=120.3
Q ss_pred CCCHhhHHHHHhhhh-cCCcE--EEeccccCHHHHHHHHHHHHhc-----CCCceEEEEecChhhhccHHHHHhhcCEEE
Q 012928 264 SITDKDWEDIKFGVD-NQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGAM 335 (453)
Q Consensus 264 ~ltekD~~DI~~a~~-~gvd~--I~lSfV~sa~dv~~v~~~L~~~-----~~~i~IIakIET~~gv~NldeI~~~sDgIm 335 (453)
.+-....+.|..+++ .|++. |.+|||++++++.+++++++.. +.++.++++|||++|+.|+++|++++|+++
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~ 696 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFS 696 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEE
Confidence 344455677777888 79888 9999999999999999988644 237899999999999999999999999999
Q ss_pred EeCCCccc-cCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCC-CchHHHHHHHHHHHh
Q 012928 336 VARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVRE 398 (453)
Q Consensus 336 IgRGDLg~-elg~---------------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~-PtrAEv~Dv~nav~~ 398 (453)
||++||+. .+|. +.|..+.++++++|+++|||+.++.+|. .. |. .+..++..
T Consensus 697 IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a------~~~p~-----~~~~l~~~ 765 (795)
T PRK06464 697 IGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAP------SDHPD-----FAEWLVEE 765 (795)
T ss_pred ECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCC------CCcHH-----HHHHHHHC
Confidence 99999997 4553 4688899999999999999999875421 12 32 23467888
Q ss_pred CccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCC
Q 012928 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (453)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (453)
|++.+.++. +++-.++..++++|+.+
T Consensus 766 G~~~ls~~~---------d~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 766 GIDSISLNP---------DAVVDTWLAVAEVEKKI 791 (795)
T ss_pred CCCEEEEcc---------hhHHHHHHHHHHhHHHh
Confidence 999999873 46666777788888654
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.16 E-value=2.4e-10 Score=124.46 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=109.3
Q ss_pred CCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHh-----------cCCCceEEEEecChhhhccHHHHHhh
Q 012928 262 LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 262 lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~-----------~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
-|.+-.-.++.|..+.+.|...|.+|+|+++++++.+++++.. .+.++.+.++|||+.|+.++++|++.
T Consensus 365 ~~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~ 444 (565)
T TIGR01417 365 REEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE 444 (565)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh
Confidence 3444455566777788899999999999999999998887753 24578999999999999999999999
Q ss_pred cCEEEEeCCCcccc----------CCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH
Q 012928 331 SDGAMVARGDLGAE----------LPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI 394 (453)
Q Consensus 331 sDgImIgRGDLg~e----------lg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n 394 (453)
+|+++||+.||+.. ++. +.|..+.++++++|+++|||+.++.+| .+.| ..+..
T Consensus 445 vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~------a~~p-----~~~~~ 513 (565)
T TIGR01417 445 VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEM------AGDE-----RAIPL 513 (565)
T ss_pred CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCc------CCCH-----HHHHH
Confidence 99999999999873 543 568889999999999999999975331 1222 34568
Q ss_pred HHHhCccEEEec
Q 012928 395 AVREGADAVMLS 406 (453)
Q Consensus 395 av~~G~D~vmLs 406 (453)
++..|++.+.++
T Consensus 514 l~~~G~~~lsv~ 525 (565)
T TIGR01417 514 LLGLGLRELSMS 525 (565)
T ss_pred HHHCCCCEEEEC
Confidence 889999998775
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.02 E-value=9.5e-10 Score=119.94 Aligned_cols=134 Identities=14% Similarity=0.068 Sum_probs=107.4
Q ss_pred CCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHh-----------cCCCceEEEEecChhhhccHHHHHhh
Q 012928 262 LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 262 lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~-----------~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
-|.+-...++.|..+...|...|.+|+|.+++++.++++.++. .+.++.+.++|||+.|+.|+++|++.
T Consensus 366 ~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~ 445 (575)
T PRK11177 366 RKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKE 445 (575)
T ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhh
Confidence 3444455566667778889999999999999999998877653 24678999999999999999999999
Q ss_pred cCEEEEeCCCccccC-----C-----C------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH
Q 012928 331 SDGAMVARGDLGAEL-----P-----I------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI 394 (453)
Q Consensus 331 sDgImIgRGDLg~el-----g-----~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n 394 (453)
+|+++||++||+..+ + . +.|..+.++++++|+++|||+.++.+| ...|.. +.-
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~------A~dp~~-----~~l 514 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGEL------AGDERA-----TLL 514 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCC------CCCHHH-----HHH
Confidence 999999999999833 2 1 568889999999999999999998763 223432 346
Q ss_pred HHHhCccEEEec
Q 012928 395 AVREGADAVMLS 406 (453)
Q Consensus 395 av~~G~D~vmLs 406 (453)
.+..|.|-+=++
T Consensus 515 LlglGi~~lSm~ 526 (575)
T PRK11177 515 LLGMGLDEFSMS 526 (575)
T ss_pred HHHCCCCeEEEC
Confidence 677888886664
No 30
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=99.00 E-value=8.8e-10 Score=110.17 Aligned_cols=159 Identities=23% Similarity=0.163 Sum_probs=126.1
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCce---EEEEecChhhhccHHHHHhhc---CEEEEeCC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIH---VIVKIESADSIPNLHSIISAS---DGAMVARG 339 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~---IIakIET~~gv~NldeI~~~s---DgImIgRG 339 (453)
|++..+||...+..++|+|.+|+++++.|+..+...+.+...... +++.|||++|+.|..+|+..+ .|+.+|..
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 567889999999999999999999999999999999986654444 999999999999999999885 79999999
Q ss_pred CccccCCCC-------CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH--HHHHHHHHHhCccEEEecC---
Q 012928 340 DLGAELPIE-------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVMLSG--- 407 (453)
Q Consensus 340 DLg~elg~e-------~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vmLs~--- 407 (453)
||..++|.. .+.++..+|+.+|+.+|+..+-. ..+.-...| ..+..++...|+|+-++=.
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~--------V~~d~~d~~g~~~e~~~a~~~Gf~GK~~IHP~Q 217 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG--------VYTDINDPEGFAREAAQAAALGFDGKTCIHPSQ 217 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc--------cccccCCHHHHHHHHHHHHHcCCCcccccChhH
Confidence 999999872 57789999999999999998642 111222222 6678889999999877621
Q ss_pred -c--ccCCCCHHHHHHHHHHHHHHHhcC
Q 012928 408 -E--TAHGKFPLKAVKVMHTVALRTESS 432 (453)
Q Consensus 408 -E--TA~G~yP~eaV~~m~~I~~~aE~~ 432 (453)
| -..-..+-+-|.+-++|+..++..
T Consensus 218 I~~vn~af~Ps~~ev~~Ar~Il~a~~~a 245 (283)
T COG2301 218 IEVVNRAFSPSEEEVAWARRVLEAAAAA 245 (283)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhh
Confidence 0 012334456788888998888853
No 31
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.67 E-value=5.5e-07 Score=96.63 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=94.5
Q ss_pred HHHHhhhhc--CCcEEEeccccCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhccHHHHHhh----cCEEEEe
Q 012928 271 EDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVA 337 (453)
Q Consensus 271 ~DI~~a~~~--gvd~I~lSfV~sa~dv~~v~~~L~~~~-------~~i~IIakIET~~gv~NldeI~~~----sDgImIg 337 (453)
.|++..++. |+ +|.+|++++++|+..+.+.+...+ ..++++++|||+.|+-|++||+.+ +.|+..|
T Consensus 174 hd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G 252 (511)
T cd00727 174 HNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCG 252 (511)
T ss_pred hhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcC
Confidence 444444444 47 999999999999999988886432 468899999999999999999976 3599999
Q ss_pred CCCccccCCC-----------C--------CHHHH-HHHHHHHHHHcCCCEEEEechhhhhccCCCCch----------H
Q 012928 338 RGDLGAELPI-----------E--------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR----------A 387 (453)
Q Consensus 338 RGDLg~elg~-----------e--------~v~~a-qk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Ptr----------A 387 (453)
+.|+..+++. + .+..+ ++.++.+|+++|+.+|-. |.. ..|.+ +
T Consensus 253 ~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~ip~kdd~~~n~~~l~ 325 (511)
T cd00727 253 RWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALA 325 (511)
T ss_pred hHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cCCcccchhhHHHHHH
Confidence 9999998821 1 23444 677999999999997652 211 12221 1
Q ss_pred H-HHHHHHHHHhCccEEEec
Q 012928 388 E-VSDIAIAVREGADAVMLS 406 (453)
Q Consensus 388 E-v~Dv~nav~~G~D~vmLs 406 (453)
. ..|-......|+|+-++-
T Consensus 326 ~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 326 KVRADKLREATAGHDGTWVA 345 (511)
T ss_pred HHHHHHHHHHhCCCCccccc
Confidence 1 455677888999998873
No 32
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.66 E-value=8.9e-07 Score=95.50 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=98.1
Q ss_pred CcEEEeccccCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCC-
Q 012928 281 VDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIE- 348 (453)
Q Consensus 281 vd~I~lSfV~sa~dv~~v~~~L~~~~-------~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e- 348 (453)
-=+|.+|++++++++..+.+.+...+ ..+++++.|||+.|+.|++||+.+ +.|+.+|+.|+..+++..
T Consensus 185 gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~ 264 (511)
T cd00480 185 GPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTF 264 (511)
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcccc
Confidence 34889999999999999998886533 358899999999999999999987 349999999999988531
Q ss_pred ------------------C-HHHHHHHHHHHHHHcCCCEEE--Eechh-hhhccCCCCchHH-HHHHHHHHHhCccEEEe
Q 012928 349 ------------------D-VPLLQEDIIRRCRSMQKPVIV--ATNML-ESMIDHPTPTRAE-VSDIAIAVREGADAVML 405 (453)
Q Consensus 349 ------------------~-v~~aqk~Ii~~c~~aGkpvi~--aTqmL-eSM~~~~~PtrAE-v~Dv~nav~~G~D~vmL 405 (453)
. +...++.++.+|+++|.++|- ++|+- .-|-..+....+. ..|...+...|+|+-+.
T Consensus 265 ~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwv 344 (511)
T cd00480 265 RNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWV 344 (511)
T ss_pred ccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccc
Confidence 1 444578899999999998742 22221 1111111102122 55677888999999877
Q ss_pred cCcccCCCCHHHHHHHHHHHHH
Q 012928 406 SGETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 406 s~ETA~G~yP~eaV~~m~~I~~ 427 (453)
- || ..|...+.+-.
T Consensus 345 i-------HP-~qV~~~n~vF~ 358 (511)
T cd00480 345 A-------HP-GLAPLAALVFH 358 (511)
T ss_pred c-------CH-HHHHHHHHHHh
Confidence 3 67 34444444443
No 33
>PRK09255 malate synthase; Validated
Probab=98.56 E-value=1.7e-06 Score=93.29 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=96.9
Q ss_pred hcCCcEEEeccccCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCcccc--
Q 012928 278 DNQVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAE-- 344 (453)
Q Consensus 278 ~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-------~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~e-- 344 (453)
..|+ +|.+|++++++|+..+.+.+...+ ..++++++|||+.|+-|++||+.+ +.|+..||.|+..+
T Consensus 204 g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~i 282 (531)
T PRK09255 204 GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYI 282 (531)
T ss_pred CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHH
Confidence 4567 999999999999999988886432 468899999999999999999976 35999999999966
Q ss_pred --CCC-------C--------CHHHH-HHHHHHHHHHcCCCEEEEechhhhhccCCCCch----------HH-HHHHHHH
Q 012928 345 --LPI-------E--------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR----------AE-VSDIAIA 395 (453)
Q Consensus 345 --lg~-------e--------~v~~a-qk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Ptr----------AE-v~Dv~na 395 (453)
++. + .+..+ ++.++.+|+++|+.+|-. | ....|.+ +. ..|-...
T Consensus 283 k~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m-~a~ip~k~D~~~n~~a~~g~r~dk~r~ 355 (531)
T PRK09255 283 KTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------M-AAFIPIKNDPEANEAALAKVRADKERE 355 (531)
T ss_pred HHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------h-hhcCCcccChhhhHHHHHHHHHHHHHH
Confidence 331 1 24444 778889999999997642 2 1112311 11 4556788
Q ss_pred HHhCccEEEecCcccCCCCHHHHHHHHHHHH
Q 012928 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 396 v~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (453)
..+|+|+-++- ||- .|...+++-
T Consensus 356 ~~lGfDGkwvi-------HP~-qV~ianevF 378 (531)
T PRK09255 356 ANDGHDGTWVA-------HPG-LVPTAMEVF 378 (531)
T ss_pred HhCCCCcceec-------CHH-HHHHHHHHH
Confidence 88999998873 673 344444444
No 34
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.51 E-value=1.6e-06 Score=93.08 Aligned_cols=234 Identities=17% Similarity=0.219 Sum_probs=141.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCC
Q 012928 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (453)
Q Consensus 97 ~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~ 176 (453)
+.||+-| | ||. +..++.+.+.+|++++-+.|--+....|+.+++--..+.+.+. .. +|-..|
T Consensus 65 ~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~-~~----i~~~~~-------- 126 (511)
T TIGR01344 65 QDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIR-GQ----IDFTDP-------- 126 (511)
T ss_pred cCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHh-Cc----CCCcCC--------
Confidence 3566666 4 897 6899999999999999999999987777776553333322221 00 011111
Q ss_pred CceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceee--
Q 012928 177 QPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN-- 254 (453)
Q Consensus 177 ~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVn-- 254 (453)
++|..++|.. +.. +..|...|--...|.|.
T Consensus 127 -----~~gk~y~l~~-----~~~--------------------------------------~liVRprG~hl~e~hv~~d 158 (511)
T TIGR01344 127 -----TSGKEYALNA-----RLA--------------------------------------VLIVRPRGWHLPERHLTID 158 (511)
T ss_pred -----CCCceeecCC-----Cce--------------------------------------EEEEecCCCCCCcchhccC
Confidence 1133332210 000 01111111111122221
Q ss_pred ---cCCCccCCCCCCHhhHHHHHhhhhc--CCcEEEeccccCHHHHHHHHHHHHhcC-------CCceEEEEecChhhhc
Q 012928 255 ---VRGKSANLPSITDKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIP 322 (453)
Q Consensus 255 ---lp~~~~~lp~ltekD~~DI~~a~~~--gvd~I~lSfV~sa~dv~~v~~~L~~~~-------~~i~IIakIET~~gv~ 322 (453)
+|+.-+++-.... .|++..++. | -+|.+|++++++++..+.+.+...+ ..++++++|||+.|+-
T Consensus 159 g~~~~~~l~Dfgl~~~---hd~~~l~~~g~G-p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~ 234 (511)
T TIGR01344 159 GEAIPGSLFDFGLYFF---HNARALLKKGKG-PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAF 234 (511)
T ss_pred CCcCchHHHHHHHHHH---hhHHHHHhCCCC-CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHH
Confidence 2333344422233 333333444 4 4999999999999999888875432 4588999999999999
Q ss_pred cHHHHHhh----cCEEEEeCCCccccCC----C------C---------CHHHH-HHHHHHHHHHcCCCEEEEechhhhh
Q 012928 323 NLHSIISA----SDGAMVARGDLGAELP----I------E---------DVPLL-QEDIIRRCRSMQKPVIVATNMLESM 378 (453)
Q Consensus 323 NldeI~~~----sDgImIgRGDLg~elg----~------e---------~v~~a-qk~Ii~~c~~aGkpvi~aTqmLeSM 378 (453)
|++||+.+ +.|+.+||.|+..++. . + .+..+ ++.++.+|+++|+.+|-. |
T Consensus 235 nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG------m 308 (511)
T TIGR01344 235 EMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG------M 308 (511)
T ss_pred hHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc------h
Confidence 99999976 4699999999995443 1 1 23344 778889999999998752 2
Q ss_pred cc-CC---CCch---HH---HHHHHHHHHhCccEEEec
Q 012928 379 ID-HP---TPTR---AE---VSDIAIAVREGADAVMLS 406 (453)
Q Consensus 379 ~~-~~---~Ptr---AE---v~Dv~nav~~G~D~vmLs 406 (453)
.- .+ .|.- |- ..|-......|+|+-++-
T Consensus 309 ~a~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 309 AAFIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred hccCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 11 01 1111 01 455677888999998773
No 35
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.31 E-value=1.7e-06 Score=87.37 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=150.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeec---CCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeec
Q 012928 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNM---SHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSG 173 (453)
Q Consensus 97 ~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNf---SHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG 173 (453)
..+++++.+-+|-. .+.+...++--.|+--+|--| .++......+..+.++++.+..+++||.| ||=
T Consensus 16 dg~~i~l~aNi~~~-~d~~~~~~~gadGIGL~RtEfl~l~~~~~p~e~eq~~~y~~i~~~~~~~pV~i---------Rtl 85 (293)
T PF02896_consen 16 DGTRIKLMANIGSP-EDAEKALELGADGIGLFRTEFLFLNRGRPPSEEEQYEIYRKIAEAMGGKPVTI---------RTL 85 (293)
T ss_dssp TS-BSEEEEEESSG-HHHHHHHHTT-SSEEEEECHHHHSSSSSHHHHHHHHHHHHHHHHHTTTSEEEE---------E--
T ss_pred CCCEEEEEEeCCCH-HHHHHHHhcCCccccchhhhhhhhcCCCCchHHHHHHHHHHHHHHhccCcEEE---------Eec
Confidence 36789999999642 233334444445566788764 45667777778888888887777677664 443
Q ss_pred CCCCceeecCCCEEEEEeecCCCCccEEEeccc-ccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccce
Q 012928 174 DVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (453)
Q Consensus 174 ~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~-~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~Kg 252 (453)
++.+.-. +.|- ... . +.+-.| ..+|
T Consensus 86 D~g~dK~----------------------l~~~~~~~----------------------~---------E~NP~L-G~RG 111 (293)
T PF02896_consen 86 DIGGDKP----------------------LPYLSREP----------------------K---------EENPAL-GLRG 111 (293)
T ss_dssp -SBCCCG----------------------SCSSHHCH---------------------------------SSGGG-SSBT
T ss_pred CCCCCcc----------------------CCcccccc----------------------c---------cccccc-cccc
Confidence 3311000 0000 000 0 000000 1112
Q ss_pred eecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhc-----------CCCceEEEEecChhhh
Q 012928 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-----------NADIHVIVKIESADSI 321 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~-----------~~~i~IIakIET~~gv 321 (453)
|.+- +.-|.+-....+.|..+...|-=.|.+|||.+.+++.++++++.+. +..+++-++||+|.++
T Consensus 112 iR~~---l~~p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaa 188 (293)
T PF02896_consen 112 IRRS---LAHPELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAA 188 (293)
T ss_dssp HHHH---HHSHHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHH
T ss_pred cccc---ccchhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHH
Confidence 2211 2224445555666666666665568999999999999999987654 2568999999999999
Q ss_pred ccHHHHHhhcCEEEEeCCCccccC-CC---------------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCc
Q 012928 322 PNLHSIISASDGAMVARGDLGAEL-PI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (453)
Q Consensus 322 ~NldeI~~~sDgImIgRGDLg~el-g~---------------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Pt 385 (453)
--++++++.+|.+-||-.||..-+ +. +.|..+.++++.+|+++||||.++.+|-. .|.
T Consensus 189 l~~~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~ 262 (293)
T PF02896_consen 189 LMADEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPE 262 (293)
T ss_dssp HTHHHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHH
T ss_pred HHHHHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHH
Confidence 999999999999999999983221 11 34778889999999999999999977432 233
Q ss_pred hHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 386 RAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
-+--.+..|.|.+-.+ | .+|-.++..+++
T Consensus 263 -----~~~~Ll~lGi~~lSv~--------p-~~i~~vk~~i~~ 291 (293)
T PF02896_consen 263 -----AIPLLLGLGIRSLSVS--------P-DSIPRVKKAIRR 291 (293)
T ss_dssp -----HHHHHHHHT-SEEEE---------G-GGHHHHHHHHHC
T ss_pred -----HHHHHHHcCCCEEEEC--------H-HHHHHHHHHHHh
Confidence 3447788999999886 3 345555555543
No 36
>PLN02626 malate synthase
Probab=98.15 E-value=6.2e-05 Score=81.23 Aligned_cols=238 Identities=16% Similarity=0.217 Sum_probs=144.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCC
Q 012928 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (453)
Q Consensus 97 ~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~ 176 (453)
..||.-| | ||. +..++.+.+.+|+++|-..|--+.-..|..+++--........ .. +.
T Consensus 89 ~dRrvEI--t-gP~--drkm~inalNSga~~~maDfEDs~sPtW~n~i~Gq~nl~~a~~-~~----------------i~ 146 (551)
T PLN02626 89 ADRRVEI--T-GPV--ERKMVINALNSGAKVFMADFEDSLSPTWENLMRGQVNLRDAVR-GT----------------IT 146 (551)
T ss_pred ccceeee--c-CCC--cHHHHHHHHcCCCCEEEecCCccCCCcchhHHHHHHHHHHHhc-CC----------------Cc
Confidence 3678887 4 996 4899999999999999999999987788888774333322222 00 00
Q ss_pred Cceee-cCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeec
Q 012928 177 QPIIL-KEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (453)
Q Consensus 177 ~~i~L-~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnl 255 (453)
+.- .+|..++|. +......|..-|-.-..|.|.+
T Consensus 147 --~~~~~~Gk~y~l~-------------------------------------------~~~a~l~vRpRG~hl~E~hv~v 181 (551)
T PLN02626 147 --FTDKARGKVYKLN-------------------------------------------DKTAKLFVRPRGWHLPEAHILV 181 (551)
T ss_pred --cccCCCCceEeeC-------------------------------------------CCcceEEEecCcccCCcchhcc
Confidence 000 123333331 0001111222232233333332
Q ss_pred CC-----CccCCCCCCHhhHHHHHhhhhc--CC-cEEEeccccCHHHHHHHHHHHHhcC-------CCceEEEEecChhh
Q 012928 256 RG-----KSANLPSITDKDWEDIKFGVDN--QV-DFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADS 320 (453)
Q Consensus 256 p~-----~~~~lp~ltekD~~DI~~a~~~--gv-d~I~lSfV~sa~dv~~v~~~L~~~~-------~~i~IIakIET~~g 320 (453)
-| .-+++-..-- .+.+..++. |- -||.+|+++++.+++.+.+++...+ ..+++.+.|||..|
T Consensus 182 dG~pv~g~L~DfgL~~f---hn~~~l~~~~~GsgpYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A 258 (551)
T PLN02626 182 DGEPATGSLFDFGLYFF---HNYAAFRAKQGGFGPFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPA 258 (551)
T ss_pred CCCCCccHHHHHHHHHH---hhHHHHHhccCCCCceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHH
Confidence 22 2222211111 111222333 43 5899999999999999988875432 46899999999999
Q ss_pred hccHHHHHhhc----CEEEEeCCCc----cccCCC---------CC----HHHHHH---HHHHHHHHcCCCEEEEechhh
Q 012928 321 IPNLHSIISAS----DGAMVARGDL----GAELPI---------ED----VPLLQE---DIIRRCRSMQKPVIVATNMLE 376 (453)
Q Consensus 321 v~NldeI~~~s----DgImIgRGDL----g~elg~---------e~----v~~aqk---~Ii~~c~~aGkpvi~aTqmLe 376 (453)
+-|++||+.++ -|+..||-|+ ...++. .. ++.++. .++.+|+++|...|-. |--
T Consensus 259 ~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a 336 (551)
T PLN02626 259 VFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAA 336 (551)
T ss_pred HHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccc
Confidence 99999999774 5999999999 444432 12 556665 9999999999997642 111
Q ss_pred hh--ccCCCCchHH----HHHHHHHHHhCccEEEec
Q 012928 377 SM--IDHPTPTRAE----VSDIAIAVREGADAVMLS 406 (453)
Q Consensus 377 SM--~~~~~PtrAE----v~Dv~nav~~G~D~vmLs 406 (453)
-+ ...|.++.+. ..|-.....+|+|+-+.-
T Consensus 337 ~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wVi 372 (551)
T PLN02626 337 QIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAA 372 (551)
T ss_pred cccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeec
Confidence 11 0112222122 456678899999998884
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.47 E-value=0.0002 Score=81.09 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=90.7
Q ss_pred cCCcEEEeccccCHHHHHHHHHHHHhc--------C---CCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccC-C
Q 012928 279 NQVDFYAVSFVKDAKVVHELKDYLKSC--------N---ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL-P 346 (453)
Q Consensus 279 ~gvd~I~lSfV~sa~dv~~v~~~L~~~--------~---~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~el-g 346 (453)
.|-=.|.+|||.+.+++.++++.+++. + .++++-++||+|.++--+|++++.+|.+-||-.||..=+ .
T Consensus 549 ~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la 628 (748)
T PRK11061 549 TGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLA 628 (748)
T ss_pred CCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHH
Confidence 455568999999999999998887631 2 246789999999999999999999999999999985321 1
Q ss_pred C---------------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 347 I---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 347 ~---------------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
. +.|..+.++++.+|+++||||.++.+| ...|... .-.+..|.|.+=++
T Consensus 629 ~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~------a~dp~~~-----~~L~glGi~~lS~~ 692 (748)
T PRK11061 629 VDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEM------AGDPMGA-----LLLIGLGYRHLSMN 692 (748)
T ss_pred hcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCc------ccCHHHH-----HHHHHCCCcEEccC
Confidence 1 357788899999999999999998763 2234432 36677788775443
No 38
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.16 E-value=0.0025 Score=73.13 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=99.4
Q ss_pred CCCCCCHhhHHHHHhhhhc----CCc---EEEeccccCHHHHHHHHHHHHhc--------C--CCceEEEEecChhhhcc
Q 012928 261 NLPSITDKDWEDIKFGVDN----QVD---FYAVSFVKDAKVVHELKDYLKSC--------N--ADIHVIVKIESADSIPN 323 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~~~----gvd---~I~lSfV~sa~dv~~v~~~L~~~--------~--~~i~IIakIET~~gv~N 323 (453)
..|.|..-..+.|-.|... |.. -|++|||.+.+++..+++.+.+. | -++.|-++||+|.|.-.
T Consensus 668 ~~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ 747 (856)
T TIGR01828 668 TYPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALT 747 (856)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHH
Confidence 3455555555566433332 632 68999999999999998887632 2 24689999999999999
Q ss_pred HHHHHhhcCEEEEeCCCccccC-CC----------------------------CCHHHHHHHHHHHHHH--cCCCEEEEe
Q 012928 324 LHSIISASDGAMVARGDLGAEL-PI----------------------------EDVPLLQEDIIRRCRS--MQKPVIVAT 372 (453)
Q Consensus 324 ldeI~~~sDgImIgRGDLg~el-g~----------------------------e~v~~aqk~Ii~~c~~--aGkpvi~aT 372 (453)
+++|++.+|.+-||-.||..-+ |+ +.|..+.+.++++|++ +|++|.++.
T Consensus 748 ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 748 ADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 9999999999999988874321 22 2356677899999998 899999986
Q ss_pred chhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+| ...|.-. ...+..|.|.+-.|
T Consensus 828 E~------a~dp~~i-----~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 828 EH------GGDPSSI-----EFCHKIGLNYVSCS 850 (856)
T ss_pred CC------cCCHHHH-----HHHHHCCCCEEEEC
Confidence 63 3445543 36677899988776
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.002 Score=70.10 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=87.2
Q ss_pred CCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHh-------c----CCCceEEEEecChhhhccHHHHHhhcCE
Q 012928 265 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-------C----NADIHVIVKIESADSIPNLHSIISASDG 333 (453)
Q Consensus 265 ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~-------~----~~~i~IIakIET~~gv~NldeI~~~sDg 333 (453)
|-.-.++.|..|-..|-=.|++|+|.+.++++.+++.+.+ . ++++.+=.|||+|.+.-.++.+++.+|-
T Consensus 370 if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDF 449 (574)
T COG1080 370 IFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDF 449 (574)
T ss_pred HHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCE
Confidence 3333444555556678788999999999999999988752 1 2368888999999999999999999999
Q ss_pred EEEeCCCcc-----ccCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEec
Q 012928 334 AMVARGDLG-----AELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATN 373 (453)
Q Consensus 334 ImIgRGDLg-----~elg~-----------e~v~~aqk~Ii~~c~~aGkpvi~aTq 373 (453)
+-||-.||. ++=+- +.|..+.+.++..++++||||.++.+
T Consensus 450 fSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGE 505 (574)
T COG1080 450 FSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGE 505 (574)
T ss_pred eeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechh
Confidence 999999974 22222 45778889999999999999999865
No 40
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.72 E-value=0.0072 Score=69.51 Aligned_cols=135 Identities=20% Similarity=0.179 Sum_probs=100.2
Q ss_pred CCCCCCHhhHHHHHhh-hh---cCCc---EEEeccccCHHHHHHHHHHHH--------hcCC--CceEEEEecChhhhcc
Q 012928 261 NLPSITDKDWEDIKFG-VD---NQVD---FYAVSFVKDAKVVHELKDYLK--------SCNA--DIHVIVKIESADSIPN 323 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a-~~---~gvd---~I~lSfV~sa~dv~~v~~~L~--------~~~~--~i~IIakIET~~gv~N 323 (453)
..|.+.+-..+.|..| .. .|.+ -|.+|+|.+.+++..+++.+. +.|. +..|-++||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 4466666666666433 22 3643 489999999999999888663 2232 4689999999999999
Q ss_pred HHHHHhhcCEEEEeCCCccccC-CC----------------------------CCHHHHHHHHHHHHHH--cCCCEEEEe
Q 012928 324 LHSIISASDGAMVARGDLGAEL-PI----------------------------EDVPLLQEDIIRRCRS--MQKPVIVAT 372 (453)
Q Consensus 324 ldeI~~~sDgImIgRGDLg~el-g~----------------------------e~v~~aqk~Ii~~c~~--aGkpvi~aT 372 (453)
+|+|++.+|.+-||-.||..-+ |+ +-|..+.+.+++++++ .|+++.++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9999999999999998875321 22 1255667888999998 799999986
Q ss_pred chhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+ +.+.|.- +.-++..|.|.+-.|
T Consensus 834 E------~ggdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 E------HGGDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred C------CccCHHH-----HHHHHHCCCCEEEEC
Confidence 5 3455654 447788899998887
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.66 E-value=0.042 Score=57.15 Aligned_cols=124 Identities=25% Similarity=0.307 Sum_probs=82.7
Q ss_pred HhhHHHHHhhhhcCCcEEEe--ccccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCccc
Q 012928 267 DKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGA 343 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~l--SfV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDLg~ 343 (453)
+.+.+.++..++.|+|+|.+ +...+...+..++ ++++...++.||+ .|-|.++.++|-+ +-+|+|-+|=|==++
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik-~ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGsi 183 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIK-KIKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGSI 183 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHH-HHHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSSTT
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHH-HHHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCcc
Confidence 45667777778899999988 5656665555554 4555556788887 9999999977543 239999998442222
Q ss_pred c-------CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 344 E-------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 344 e-------lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
. +|.+ -..+.....++|+++++|+|- ..+.-+ --|++.|+..|+|+|||-
T Consensus 184 CtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIA---------DGGi~~---sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 184 CTTREVTGVGVP-QLTAVYECAEAARDYGVPIIA---------DGGIRT---SGDIVKALAAGADAVMLG 240 (352)
T ss_dssp BHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEE---------ESS-SS---HHHHHHHHHTT-SEEEES
T ss_pred cccccccccCCc-HHHHHHHHHHHhhhccCceee---------cCCcCc---ccceeeeeeecccceeec
Confidence 2 1223 334556677888889999886 333333 578999999999999984
No 42
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.45 E-value=0.03 Score=58.64 Aligned_cols=120 Identities=27% Similarity=0.256 Sum_probs=74.7
Q ss_pred HHHHHhhhhcCCcEEEecc-------ccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCc
Q 012928 270 WEDIKFGVDNQVDFYAVSF-------VKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDL 341 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSf-------V~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDL 341 (453)
.+.++.+.+.|+|+|.+.. ..++.+...+.+++++. +++||+ .|-|.+....+.+ .-+|+||+|+|-=
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~G 219 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPG 219 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 3445666789999999853 22222455566777664 578888 8888887755554 3489999998752
Q ss_pred cccC-------CCCCHHHHHHHHHHHHHHc-------CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 342 GAEL-------PIEDVPLLQEDIIRRCRSM-------QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 342 g~el-------g~e~v~~aqk~Ii~~c~~a-------Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+... |++.+. +......+++++ +.|+|.+ .+.-+ -.|++.|+..|+|+||+.
T Consensus 220 s~~~t~~~~g~g~p~~~-ai~~~~~a~~~~l~~~~~~~vpVIAd---------GGI~~---~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 220 AACTSRGVLGIGVPMAT-AIADVAAARRDYLDETGGRYVHVIAD---------GGIGT---SGDIAKAIACGADAVMLG 285 (368)
T ss_pred cCCCCcccCCCCcCHHH-HHHHHHHHHHHhhhhhcCCCCeEEEe---------CCCCC---HHHHHHHHHcCCCeeccc
Confidence 1111 222221 112222223322 5788875 33433 468999999999999973
No 43
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.37 E-value=0.012 Score=63.67 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=79.0
Q ss_pred CCcEEEeccccCHHHHHHHHHHHHhcC-----------------------CCceEEEEecChhhhccHHHHHhh-c----
Q 012928 280 QVDFYAVSFVKDAKVVHELKDYLKSCN-----------------------ADIHVIVKIESADSIPNLHSIISA-S---- 331 (453)
Q Consensus 280 gvd~I~lSfV~sa~dv~~v~~~L~~~~-----------------------~~i~IIakIET~~gv~NldeI~~~-s---- 331 (453)
.+-.|.+||.++++|+..+..+..+++ ..+.||+.+||.+++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 566799999999999999988877653 135899999999999999999986 1
Q ss_pred ---CEEEEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 332 ---DGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 332 ---DgImIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
--||+|+-|=+.+.|. -.+..+|.++.+.|+++|.++...
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~pf 248 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYPI 248 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 1799999999999997 357889999999999999997653
No 44
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.95 E-value=0.21 Score=51.33 Aligned_cols=123 Identities=28% Similarity=0.384 Sum_probs=78.4
Q ss_pred HhhHHHHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhh-cCEEEEe--CCCc
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RGDL 341 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~-sDgImIg--RGDL 341 (453)
+.+.+.++..++.|+|+|.+++.. +.+.+.++-+.+.+...++.|++ .+.|++....+ +++ +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCcC
Confidence 556777788889999999886532 22344444455555555677876 66666665444 344 8999984 3321
Q ss_pred c--c---cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 342 G--A---ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 342 g--~---elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
. . ..+.+. ..+...+.+.+++.++|+|-+ .+..+ -.|++.++..|+|+||+
T Consensus 170 ~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpVIA~---------GGI~~---~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVPQ-ATAVADVAAAARDYGVPVIAD---------GGIRT---SGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCCH-HHHHHHHHHHHhhcCCcEEec---------CCCCC---HHHHHHHHHcCCCEEEe
Confidence 1 1 112222 234456677777789998853 44444 46788999999999998
No 45
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.94 E-value=0.14 Score=52.92 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=81.6
Q ss_pred CHhhHHHHHhhhh--cCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEe--C
Q 012928 266 TDKDWEDIKFGVD--NQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--R 338 (453)
Q Consensus 266 tekD~~DI~~a~~--~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIg--R 338 (453)
++.|.+-++..++ .|+|+|.+- .-.+...+. .-+++++.-.++.||| .+-|+++.++|-+ +-+|++-+| +
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~-~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQ-FVAKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHH-HHHHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 5667777776666 599998873 333333333 3345555556677777 8999999877543 348998876 3
Q ss_pred CCccc-----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 339 GDLGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 339 GDLg~-----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
|-... -.|.+. ..+.....++|++.|+|+|- ..+..+ --|++.|+..|+|+|||.
T Consensus 183 GSiCtTr~vtGvG~PQ-ltAV~~~a~~a~~~gvpiIA---------DGGi~~---sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 183 GSVCTTRVKTGVGYPQ-LSAVIECADAAHGLGGQIVS---------DGGCTV---PGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CccccCccccccChhH-HHHHHHHHHHHHHcCCCEEe---------cCCccc---ccHHHHHHHcCCCEEEeC
Confidence 32211 122232 23446667778888999875 344443 478999999999999984
No 46
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.88 E-value=0.028 Score=60.73 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=80.4
Q ss_pred hcCCcEEEeccccCHHHHHHHHHHHHhcC--------------CCceEEEEecChhhhccHHHHHhh----------cCE
Q 012928 278 DNQVDFYAVSFVKDAKVVHELKDYLKSCN--------------ADIHVIVKIESADSIPNLHSIISA----------SDG 333 (453)
Q Consensus 278 ~~gvd~I~lSfV~sa~dv~~v~~~L~~~~--------------~~i~IIakIET~~gv~NldeI~~~----------sDg 333 (453)
...+..+.+|++++++|+.++..++++.+ ..+.|++.+||.+.+.|.++|+.. .--
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 35667789999999999999887776554 157899999999999999999975 138
Q ss_pred EEEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 334 AMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 334 ImIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
||+|+-|=+.+-|+ -.+..+|.++.+.|+++|+++...
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~f 240 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYPI 240 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 99999999999997 468899999999999999997664
No 47
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.79 E-value=0.14 Score=52.90 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=79.5
Q ss_pred CHhhHHHHHhhhhc--CCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhhcCEEEEe--C
Q 012928 266 TDKDWEDIKFGVDN--QVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA--R 338 (453)
Q Consensus 266 tekD~~DI~~a~~~--gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~sDgImIg--R 338 (453)
++.|.+-++..++. ++|+|.+- .-.+...+.. -+++++.-.+..||+= |-|+++.+++-+ +-+|+|.+| +
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~-ik~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGp 181 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEF-VKLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGP 181 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHH-HHHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 56777777777776 59998873 3333333333 3445554456788886 999999876543 349999987 3
Q ss_pred CCccccCCCCC----HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 339 GDLGAELPIED----VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 339 GDLg~elg~e~----v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
|=-..-=-..- -..+...+.++++..++|+|. ..+... -.|++.|+..|+|+||+.
T Consensus 182 GSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa---------DGGIr~---~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS---------DGGCTC---PGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE---------cCCcCc---hhHHHHHHHcCCCEEEEC
Confidence 32211110111 223335555566666778776 344443 578999999999999985
No 48
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.50 E-value=0.32 Score=52.96 Aligned_cols=124 Identities=27% Similarity=0.314 Sum_probs=80.8
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccc--cCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhh-cCEEEEe--CC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RG 339 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV--~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~-sDgImIg--RG 339 (453)
++.+.+.+...++.|+|.|.+... ++...+..+++ +.+.-.++.|+| -+-|+++...+ +++ +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~~~---~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAKNL---IDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHHHH---HHcCCCEEEECCcCC
Confidence 345677777788999999997643 34433333333 333334688888 67776666543 344 8999864 55
Q ss_pred C-----ccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 340 D-----LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 340 D-----Lg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
= .-...|.+.+ .+...+.+.|++.|.|+|. ..+.-+ -.|++.|+..|+|+||+.
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIa---------dGGi~~---~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIA---------DGGIKN---SGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEe---------cCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 2 2223444433 3445677788899999886 344444 467999999999999984
No 49
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=95.33 E-value=0.12 Score=59.86 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=80.8
Q ss_pred cCCcEEEeccccCHHHHHHHHHHHHhcC--------CCceEEEEecChhhhccHHHHHhh--c--------------CEE
Q 012928 279 NQVDFYAVSFVKDAKVVHELKDYLKSCN--------ADIHVIVKIESADSIPNLHSIISA--S--------------DGA 334 (453)
Q Consensus 279 ~gvd~I~lSfV~sa~dv~~v~~~L~~~~--------~~i~IIakIET~~gv~NldeI~~~--s--------------DgI 334 (453)
..+..+.+|+.++++||.++..++++.| ..+.|++-.||.+.++|.++|+.. . --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 3566788999999999999988888765 257899999999999999999986 1 179
Q ss_pred EEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 335 MVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 335 mIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
|+|.-|=+.+-|+ ..+..+|+++.+.|+++|+++...
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999887 468899999999999999998775
No 50
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.20 E-value=0.13 Score=53.85 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=68.9
Q ss_pred HHHHhhhhcCCcEEEec-------cccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS-------fV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
+-.+.+.+.|+|+|.+. |+....+...+.+++.+. +++||+ .|-|.+....+-+ .-+|+||+|||--.
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 44456678999999875 222223445566666553 577886 6666555433332 23899999876422
Q ss_pred cc-----CCCCCHHHHHHHHHHHHH----HcC---CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 343 AE-----LPIEDVPLLQEDIIRRCR----SMQ---KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 343 ~e-----lg~e~v~~aqk~Ii~~c~----~aG---kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.. .+.+ ...+...+..+++ +.| +|+|.+ .+.-+ -.|++.++..|+|+||+.
T Consensus 222 ~~~~~lg~~~p-~~~ai~d~~~a~~~~~~e~g~r~vpVIAd---------GGI~t---g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 222 TTRLVLGIEVP-MATAIADVAAARRDYLDETGGRYVHVIAD---------GGIET---SGDLVKAIACGADAVVLG 284 (369)
T ss_pred ccccccCCCCC-HHHHHHHHHHHHHHHHHhcCCCCceEEEe---------CCCCC---HHHHHHHHHcCCCEeeeH
Confidence 11 1122 1112222222222 233 788874 44444 367999999999999984
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.74 E-value=0.71 Score=49.56 Aligned_cols=125 Identities=24% Similarity=0.293 Sum_probs=81.2
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccc--cCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEe--CCC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGD 340 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV--~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIg--RGD 340 (453)
.+.+.+.....++.|+|+|.+-.. ++. .+.+.-+.+.+.-.++.|++ -+-|+++..++-+ .-+|+|-+| +|-
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~-~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~ 298 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSI-YVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGS 298 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHh-HHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCc
Confidence 456677777778999999987543 222 23333333444334677777 7888887766554 238998865 552
Q ss_pred ccc-----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 341 LGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 341 Lg~-----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
-.. ..|.+.+ .+...+.+.|++.++|+|. ..+.-+ -.|++.|+..|+|+||+.
T Consensus 299 ~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpvia---------dGGi~~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 299 ICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIA---------DGGIRY---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred CCccceecCCCccHH-HHHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 211 1333332 4556677778889999776 344555 467999999999999984
No 52
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.72 E-value=0.06 Score=58.94 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=97.5
Q ss_pred CcEEEeccccCHHHHHHHHHHHHhc-------C----CCceEEEEecChhhhccHHHHHhhcCEEEEeCCCcc-----cc
Q 012928 281 VDFYAVSFVKDAKVVHELKDYLKSC-------N----ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLG-----AE 344 (453)
Q Consensus 281 vd~I~lSfV~sa~dv~~v~~~L~~~-------~----~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg-----~e 344 (453)
-=-|.+|+|...+++++.++++.+. + ...++=+++|-|.-+..+++++...|-+-+|-.||. ++
T Consensus 559 ~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvD 638 (756)
T COG3605 559 NLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVD 638 (756)
T ss_pred CceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHh
Confidence 3458999999999999999888543 2 246688999999999999999999999999999974 33
Q ss_pred CCC-----------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCC
Q 012928 345 LPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (453)
Q Consensus 345 lg~-----------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (453)
-|- +.+..+-|+|..+|..+|+||-++.+| .+.|--| .-.+..|++.+=++ -|++|+
T Consensus 639 R~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEM------Ag~Pl~A-----~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 639 RNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEM------AGDPLSA-----MALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred cCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhh------cCChHHH-----HHHHhcCcCccccC-cccccc
Confidence 333 235667799999999999999987653 3344432 25577899887765 466775
Q ss_pred CHHHHHHHHHHHH
Q 012928 414 FPLKAVKVMHTVA 426 (453)
Q Consensus 414 yP~eaV~~m~~I~ 426 (453)
||+|-.=+
T Consensus 707 -----VK~ml~~l 714 (756)
T COG3605 707 -----VKYLLRHL 714 (756)
T ss_pred -----HHHHHHhc
Confidence 55554433
No 53
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=94.71 E-value=0.13 Score=60.15 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=101.0
Q ss_pred CcEEEeccccCHHHHHHHHHHHHhcC-----CCceEEEEecChhhhccHHHHHhh--c---------------CEEEEeC
Q 012928 281 VDFYAVSFVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISA--S---------------DGAMVAR 338 (453)
Q Consensus 281 vd~I~lSfV~sa~dv~~v~~~L~~~~-----~~i~IIakIET~~gv~NldeI~~~--s---------------DgImIgR 338 (453)
+..+.+|+.++++||.++..+.++.+ ..+.|++-.||.+.++|.++|+.. . --||+|.
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 34467899999999999988887744 257899999999999999999975 1 1799999
Q ss_pred CCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC
Q 012928 339 GDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (453)
Q Consensus 339 GDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (453)
-|=+.+-|+ ..+..+|.++.+.|+++|+.+...=..=.|+-..+.|+...+..--.....|.=-+-..||+-.-+|
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky 705 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNF 705 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhc
Confidence 999999987 4688999999999999999988764444444455556543321111112224333445556555555
Q ss_pred HHH--HHHHHHH
Q 012928 415 PLK--AVKVMHT 424 (453)
Q Consensus 415 P~e--aV~~m~~ 424 (453)
+.. |.+.+..
T Consensus 706 ~~~~~a~~~le~ 717 (974)
T PTZ00398 706 GLKGICLRTWEL 717 (974)
T ss_pred CChHHHHHHHHH
Confidence 443 4444444
No 54
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.44 E-value=0.64 Score=50.78 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=78.9
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccc--cCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEe--CCC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGD 340 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV--~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIg--RGD 340 (453)
.+.+.+-++..++.|+|.|++--. .+...+. .-+++++...+..||+ -|-|++.-.++.+ .-+|+|.+| +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~-~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLE-MIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHH-HHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 355677778888999999987432 2222222 2334444445677876 4999988766654 348999886 442
Q ss_pred ccc-----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 341 LGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 341 Lg~-----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
-+. ..|.+.+. +...+.+.+++.++|+|.. .+.-+ -.|++.|+..|+|+||+.
T Consensus 323 ~~~t~~~~~~g~~~~~-~i~~~~~~~~~~~vpVIad---------GGI~~---~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQAT-AVYKVASIAAQHGVPVIAD---------GGISN---SGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCccc-HHHHHHHHHHhcCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEc
Confidence 111 12222222 3333556677789998874 44444 467999999999999984
No 55
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.25 Score=56.24 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=88.8
Q ss_pred EEEeccccCHHHHHHHHHHHH---hcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCcccc-CCC-----------
Q 012928 283 FYAVSFVKDAKVVHELKDYLK---SCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAE-LPI----------- 347 (453)
Q Consensus 283 ~I~lSfV~sa~dv~~v~~~L~---~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~e-lg~----------- 347 (453)
.+.+||+++......+. .+. ..+....+..+||.|.++-..+||++..|++-+|.+||..- +|+
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 46788999998888776 433 11123889999999999999999999999999999998532 233
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+.|-.+.+..+..|+.+++.+.++.| ....|.-|+ -++..|.|+|.++
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~------~~~~p~~a~-----~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQ------APSDPHGAI-----FLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEecc------CCCCcHHHH-----HHHHcCCCeEecC
Confidence 46788889999999999999999887 333355554 6789999999976
No 56
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.96 E-value=0.75 Score=49.93 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCHhhHHHHHhhhhcCCcEEEeccccC-HHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEe--CC
Q 012928 264 SITDKDWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RG 339 (453)
Q Consensus 264 ~ltekD~~DI~~a~~~gvd~I~lSfV~s-a~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIg--RG 339 (453)
.+++++.+.+...++.|+|.|++--.+. ...+.++-+.+++...++.||| -|-|.++..++.+ +-+|+|-+| +|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 3455566667777889999988742222 2334444455666556789999 9999999988765 348988755 44
Q ss_pred CccccCCCCC--HH--HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 340 DLGAELPIED--VP--LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 340 DLg~elg~e~--v~--~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
-...--++.. +| .+..++.++|++.|+|+|. ..+..+. .|++.++..|+|++|+.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via---------~ggi~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA---------DGGVRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEe---------cCCCCCH---HHHHHHHHcCCCeeecc
Confidence 3332222211 12 3345566666778999887 3555553 67889999999999973
No 57
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.67 E-value=1.1 Score=45.68 Aligned_cols=112 Identities=20% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e 348 (453)
.+.++.+++.++++|.++|....+.+ +.+++. .+.+++.+=|.+- .....+. +|+|.+--.+-+-..|..
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i----~~lk~~--g~~v~~~v~s~~~---a~~a~~~GaD~Ivv~g~eagGh~g~~ 147 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYI----PRLKEN--GVKVIPVVASVAL---AKRMEKAGADAVIAEGMESGGHIGEL 147 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHH----HHHHHc--CCEEEEEcCCHHH---HHHHHHcCCCEEEEECcccCCCCCCC
Confidence 45567778999999998876443333 334333 4778888866542 3333333 899887332433333322
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
......+++. .+.++|+|.+ .+.-+ -.|+..++..|+|+|++
T Consensus 148 ~~~~ll~~v~---~~~~iPviaa---------GGI~~---~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 148 TTMALVPQVV---DAVSIPVIAA---------GGIAD---GRGMAAAFALGAEAVQM 189 (307)
T ss_pred cHHHHHHHHH---HHhCCCEEEE---------CCCCC---HHHHHHHHHcCCCEeec
Confidence 2233333443 3347998886 33333 45577788899999996
No 58
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.45 E-value=1.7 Score=46.19 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=78.5
Q ss_pred CHhhHHHHHhhhhcCCcEEEe--ccccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~l--SfV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
++.+.+.++..++.|+|+|++ +.-. ...+.++-+.+++.-.+..||+ -|-|.++..++.+. -+|+|.+|=|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 455677788888999999994 3322 2344444445555444565655 78998888776542 4899988633211
Q ss_pred c-------cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 343 A-------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 343 ~-------elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+ ..|.+.+. +...+.+.+++.+.|+|. ..+.-+ -.|++.|+..|+|+||+.
T Consensus 228 ~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIA---------dGGI~~---~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIA---------DGGIRF---SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1 12333222 223344556677899876 344444 467999999999999974
No 59
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.29 E-value=0.84 Score=49.85 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=70.9
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHH--HHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCcc----
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKV--VHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG---- 342 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~d--v~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDLg---- 342 (453)
.+-++..++.|+|+|.+.-.....+ +..++.+-......+.|++ .|.|+++.+.+-+ +-+|+|.+|-|==+
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCccc
Confidence 4555666889999998862222211 3333332222334477776 7999988865543 34899998643221
Q ss_pred ---ccCCCCCHHHHHHHHHHHHH----HcC--CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 343 ---AELPIEDVPLLQEDIIRRCR----SMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 343 ---~elg~e~v~~aqk~Ii~~c~----~aG--kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
...|.+.+ .+...+.++++ +.| +|+|. ..+..+ -.|++.|+..|||+||+.
T Consensus 322 r~~~~~g~~~~-~ai~~~~~a~~~~~~~~g~~~~via---------dgGir~---~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 322 REQKGIGRGQA-TALIEVAKARDEYFEETGVYIPICS---------DGGIVY---DYHMTLALAMGADFIMLG 381 (502)
T ss_pred ccccCCCccHH-HHHHHHHHHHHHHHhhcCCcceEEE---------cCCCCc---hhHHHHHHHcCCCeeeeC
Confidence 11222222 22233334333 347 78765 444444 578999999999999984
No 60
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.24 E-value=1.8 Score=41.77 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=46.6
Q ss_pred CCHhhHHH-HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE----EecCh-hhhccHHHHHhh-cCEEEEe
Q 012928 265 ITDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV----KIESA-DSIPNLHSIISA-SDGAMVA 337 (453)
Q Consensus 265 ltekD~~D-I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa----kIET~-~gv~NldeI~~~-sDgImIg 337 (453)
++.+.++. ...+.+.|+|+|.+++..+.+. +++..... .+++++ ++.|. +.++|+.+.++. ++|+.+|
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~---~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES---FKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH---HHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 35555554 5567889999999998664444 44444322 344432 22232 256788888887 8999999
Q ss_pred CCCccc
Q 012928 338 RGDLGA 343 (453)
Q Consensus 338 RGDLg~ 343 (453)
|.=+..
T Consensus 215 ~~i~~~ 220 (235)
T cd00958 215 RNIFQR 220 (235)
T ss_pred hhhhcC
Confidence 865533
No 61
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=93.02 E-value=3.4 Score=40.41 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCC--
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 348 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e-- 348 (453)
..|....+.|+|.|.+.+ ++..++...-+++++.|....|..+-+|+ ++.+..++...|.|++ ++++-|+.
T Consensus 76 ~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~--~~~i~~~l~~vD~Vlv----MtV~PGf~GQ 148 (223)
T PRK08745 76 RIVPDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPATP--VDILDWVLPELDLVLV----MSVNPGFGGQ 148 (223)
T ss_pred HHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCCC--HHHHHHHHhhcCEEEE----EEECCCCCCc
Confidence 345555678999998764 65567777778888989888888888884 6778899999998888 45555541
Q ss_pred -CHHHHHHH---HHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHH
Q 012928 349 -DVPLLQED---IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (453)
Q Consensus 349 -~v~~aqk~---Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (453)
-.+..-++ +-+...+.+..+-+. .-+--+. .-+......|+|.+++.+---...-|.++++.|++
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~Ie--------VDGGI~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLE--------IDGGVKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEE--------EECCCCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 12222222 222233445553332 1122222 23446788899999986432223469999999998
Q ss_pred HHHH
Q 012928 425 VALR 428 (453)
Q Consensus 425 I~~~ 428 (453)
.+.+
T Consensus 218 ~~~~ 221 (223)
T PRK08745 218 AVAA 221 (223)
T ss_pred HHHh
Confidence 7654
No 62
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.84 E-value=2.7 Score=40.99 Aligned_cols=145 Identities=10% Similarity=0.063 Sum_probs=92.5
Q ss_pred CCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccc
Q 012928 264 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGA 343 (453)
Q Consensus 264 ~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~ 343 (453)
-+.+.=...|..-.+.|+|+|.+. +++..++.++-+++++.|....+..+=.| -++.++.++...|.+++ +++
T Consensus 65 LMv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV 137 (220)
T PRK08883 65 LMVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSV 137 (220)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEe
Confidence 333333345555568899998876 46667787777888898988888888888 46778999999998887 344
Q ss_pred cCCCC---CHHHHHHH---HHHHHHHcC--CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCH
Q 012928 344 ELPIE---DVPLLQED---IIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (453)
Q Consensus 344 elg~e---~v~~aqk~---Ii~~c~~aG--kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (453)
+-|.. -++...++ +-+...++| .|+.+. +--+ ...+...+..|+|++.+.+.--..+-|
T Consensus 138 ~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd----------GGI~---~eni~~l~~aGAd~vVvGSaIf~~~d~ 204 (220)
T PRK08883 138 NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID----------GGVK---VDNIREIAEAGADMFVAGSAIFGQPDY 204 (220)
T ss_pred cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE----------CCCC---HHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 44331 12222222 222223333 454442 1222 224557788999999986543334569
Q ss_pred HHHHHHHHHHHHH
Q 012928 416 LKAVKVMHTVALR 428 (453)
Q Consensus 416 ~eaV~~m~~I~~~ 428 (453)
.++++.+++...+
T Consensus 205 ~~~i~~l~~~~~~ 217 (220)
T PRK08883 205 KAVIDEMRAELAK 217 (220)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887543
No 63
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.53 E-value=3.7 Score=42.42 Aligned_cols=126 Identities=20% Similarity=0.318 Sum_probs=75.9
Q ss_pred CCHhhHHHHHhhhhcC--CcEEEecc--ccCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhhcCEEEEe--
Q 012928 265 ITDKDWEDIKFGVDNQ--VDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA-- 337 (453)
Q Consensus 265 ltekD~~DI~~a~~~g--vd~I~lSf--V~sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~sDgImIg-- 337 (453)
.+++|.+.+...++.| +|+|.+-- -.+..-+..++. +.+.-+.+.||+. |-|++....+.+ .-+|+|.++
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~G 167 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGIG 167 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 3778888888888888 69887643 233333333433 4443355668888 988887766553 238999887
Q ss_pred CCCcc---ccCCCCCHHHHH-HHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 338 RGDLG---AELPIEDVPLLQ-EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 338 RGDLg---~elg~e~v~~aq-k~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+|=-. ...|.. .+..| ..|.+.+.+..+|+|. ..+..+ -.|++.|+..|+|++|+.
T Consensus 168 ~G~~~~tr~~~g~g-~~~~~l~ai~ev~~a~~~pVIa---------dGGIr~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 168 PGKVCITKIKTGFG-TGGWQLAALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCccccceeeeccC-CCchHHHHHHHHHHhcCCeEEE---------ECCcCc---HHHHHHHHHcCCCEEeec
Confidence 22210 111111 11112 2233334445677665 344444 478999999999999985
No 64
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.15 E-value=3.9 Score=39.22 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=72.9
Q ss_pred hHHHHHhhhhcCCcEEEec--cccCH--HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCC
Q 012928 269 DWEDIKFGVDNQVDFYAVS--FVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lS--fV~sa--~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGD 340 (453)
+.+.++.+.+.|+|+|.+- ...++ +.+.++.+.+.+. ..+.+++-+-| .+++..+ +|.+.+..++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t------~ee~~~a~~~G~d~i~~~~~g 149 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCST------LEEGLAAQKLGFDFIGTTLSG 149 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCC------HHHHHHHHHcCCCEEEcCCce
Confidence 3456777888999987653 22223 5566666666654 56677765443 3444333 6887775444
Q ss_pred ccccC--CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHH
Q 012928 341 LGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKA 418 (453)
Q Consensus 341 Lg~el--g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~ea 418 (453)
+...- ....-...-+++.. ..++|++.+ .+.-+. .|+..++..|+|++++.+. +-+ |.+.
T Consensus 150 ~t~~~~~~~~~~~~~i~~i~~---~~~iPvia~---------GGI~t~---~~~~~~l~~GadgV~iGsa--i~~-~~~~ 211 (221)
T PRK01130 150 YTEETKKPEEPDFALLKELLK---AVGCPVIAE---------GRINTP---EQAKKALELGAHAVVVGGA--ITR-PEEI 211 (221)
T ss_pred eecCCCCCCCcCHHHHHHHHH---hCCCCEEEE---------CCCCCH---HHHHHHHHCCCCEEEEchH--hcC-CHHH
Confidence 42211 11111222223322 237998874 344443 4566778899999999743 333 4555
Q ss_pred HHHHHHH
Q 012928 419 VKVMHTV 425 (453)
Q Consensus 419 V~~m~~I 425 (453)
.+.+.+.
T Consensus 212 ~~~~~~~ 218 (221)
T PRK01130 212 TKWFVDA 218 (221)
T ss_pred HHHHHHH
Confidence 5555544
No 65
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.11 E-value=3.2 Score=40.48 Aligned_cols=138 Identities=11% Similarity=0.115 Sum_probs=84.9
Q ss_pred HHHHhhhhcCCcEEEeccccCHHH-HHHHHHHHHhcCCCceEEEEecChhhhccHHHHH--hhcCEEEEeCCCccccCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKV-VHELKDYLKSCNADIHVIVKIESADSIPNLHSII--SASDGAMVARGDLGAELPI 347 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~d-v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~--~~sDgImIgRGDLg~elg~ 347 (453)
..++...+.|+|+|.+-+- ...+ +....+.+++.|..+.|-.. +...++.+.+++ ...|.|++ ++++-|.
T Consensus 79 ~~i~~~~~~Gad~itvH~e-a~~~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 79 KWVDDFAKAGASQFTFHIE-ATEDDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHHHHHHHcCCCEEEEecc-CCchHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHHccchhhhHHh----hhcccCC
Confidence 4456667889999988653 3344 66777777777765554444 444788899998 66788875 6677666
Q ss_pred CCH---HHHHHHHHHHHHHcC-CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 348 EDV---PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 348 e~v---~~aqk~Ii~~c~~aG-kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
... +..-.++-+.....+ ..+.+ .+--+.. .+..++..|+|.+++.+--..-..|.++++.++
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~V----------dGGI~~~---ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQV----------DGGINLE---TIDIAADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEE----------CCCCCHH---HHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 321 222233322222222 22222 2222222 355778889999998655444567999999998
Q ss_pred HHHHH
Q 012928 424 TVALR 428 (453)
Q Consensus 424 ~I~~~ 428 (453)
+.+.+
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 87654
No 66
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.88 E-value=4.5 Score=41.86 Aligned_cols=128 Identities=20% Similarity=0.319 Sum_probs=75.0
Q ss_pred CHhhHHHHHhhhhcCC--cEEEecccc-CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhhcCEEEEeCCCc
Q 012928 266 TDKDWEDIKFGVDNQV--DFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARGDL 341 (453)
Q Consensus 266 tekD~~DI~~a~~~gv--d~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~sDgImIgRGDL 341 (453)
++++.+-+...++.|+ |+|++--.. .-..+.++-+.+.+.-+++.||++ |-|.+...++.+ .-+|++.+|=+-=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 4566677777778855 999882111 122333334445554566889996 999888866654 2389988872211
Q ss_pred cc--c---CCCCCHHHHHHHHHHHH-HHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 342 GA--E---LPIEDVPLLQEDIIRRC-RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 342 g~--e---lg~e~v~~aqk~Ii~~c-~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
+. + .|. ..+..|-..+..| .+..+|+|- ..+.-+ -.|++.++..|+|+||+.+-
T Consensus 173 ~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIA---------dGGI~~---~~Di~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 173 KVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGATMVMIGSL 232 (326)
T ss_pred cccccccccCC-CCCccHHHHHHHHHHHcCCCEEE---------eCCCCC---HHHHHHHHHhCCCEEEechh
Confidence 11 1 111 1222232223333 334678665 455555 45788999999999998644
No 67
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=91.57 E-value=0.44 Score=54.23 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=88.1
Q ss_pred ecccceeecCCCccCCCCCCHhhHHHHHhhh----hcCCcE---EEeccccCHHHHHHHHHHHHhcCC------CceEEE
Q 012928 247 LKSRRHLNVRGKSANLPSITDKDWEDIKFGV----DNQVDF---YAVSFVKDAKVVHELKDYLKSCNA------DIHVIV 313 (453)
Q Consensus 247 L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~----~~gvd~---I~lSfV~sa~dv~~v~~~L~~~~~------~i~IIa 313 (453)
|.+++.+--|+. .....|.+.++-.+.+. +.|.|. ..+|+.++++||.++.=++++.|- .+.|++
T Consensus 447 L~s~RPL~p~~~--~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPFW--QPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 445555444443 23344555554444332 244443 467999999999999999998874 489999
Q ss_pred EecChhhhccHHHHHhh---c-------------CEEEEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 012928 314 KIESADSIPNLHSIISA---S-------------DGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 314 kIET~~gv~NldeI~~~---s-------------DgImIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
--||.+-++|...|+.. . --||+|=.|=.-+=|+ ..+..+|+.+++.|+++|+..=+
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl 601 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL 601 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE
Confidence 99999999999999985 1 1578877776666665 36889999999999999998644
No 68
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.45 E-value=7.9 Score=38.00 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=83.1
Q ss_pred HHHhhhhcCCcEEEecc--ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEE---eCCCccccCC
Q 012928 272 DIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMV---ARGDLGAELP 346 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSf--V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImI---gRGDLg~elg 346 (453)
-++.+.+.|+|+|.++- ++..++...+.+++.+.|-+..+...=+|+ ++.++.+++.+|++++ -++..+
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~---- 166 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV---- 166 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC----
Confidence 35666789999999874 455678888888888888776666666664 5678889988987763 233422
Q ss_pred CCCHHHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC-----CCCHHHHH
Q 012928 347 IEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH-----GKFPLKAV 419 (453)
Q Consensus 347 ~e~v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~-----G~yP~eaV 419 (453)
++..-....++..++. .+|+++ ..+.-+. .++..+...|+|+++.. |++ ..-..+.+
T Consensus 167 --~~~~~~~~~i~~lr~~~~~~~i~v---------~gGI~~~---e~i~~~~~~gaD~vvvG--Sai~~~~~~~~~~~~~ 230 (244)
T PRK13125 167 --PLPVSVERNIKRVRNLVGNKYLVV---------GFGLDSP---EDARDALSAGADGVVVG--TAFIEELEKNGVESAL 230 (244)
T ss_pred --CchHHHHHHHHHHHHhcCCCCEEE---------eCCcCCH---HHHHHHHHcCCCEEEEC--HHHHHHHHhcCHHHHH
Confidence 2333333344444444 356554 3444343 35667778999998875 222 11244566
Q ss_pred HHHHHHH
Q 012928 420 KVMHTVA 426 (453)
Q Consensus 420 ~~m~~I~ 426 (453)
+.++++.
T Consensus 231 ~~~~~~~ 237 (244)
T PRK13125 231 NLLKKIR 237 (244)
T ss_pred HHHHHHH
Confidence 6665553
No 69
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.45 E-value=6.1 Score=36.95 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHH
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVP 351 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~ 351 (453)
.++.+.+.|+|+|.++--.+ ++..+..+.+...+ +.++.-+.+....+.+.++....|.+.++.-+-+.. + ....
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~t-g-~~~~ 146 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFG-G-QKFI 146 (211)
T ss_pred HHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCC-C-cccC
Confidence 46666789999988876544 33333344444433 444444533334566777776789888775443221 1 1111
Q ss_pred -HHHHHHHHHHH-----HcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHH
Q 012928 352 -LLQEDIIRRCR-----SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (453)
Q Consensus 352 -~aqk~Ii~~c~-----~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (453)
...+.+-+.+. ....|++++ .. -+ ..++..++..|+|++...+....-..|.++++.+
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~--------GG--I~---~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVD--------GG--IN---LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEE--------CC--CC---HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11222211111 124787664 11 22 1346678889999999988877777888887754
No 70
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.22 E-value=4.4 Score=38.89 Aligned_cols=116 Identities=25% Similarity=0.280 Sum_probs=65.6
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 347 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~ 347 (453)
..+.++.+.+.|+|+|.++.-...+.+..++ + ..+.++..+.+.+ .+..+.+. +|++.+....-+-..+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~----~--~~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~~~ 139 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVERLK----A--AGIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHRGT 139 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHHHH----H--cCCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCCCc
Confidence 3456667778899999998765444333333 2 2577888877653 33444433 68887633221111111
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 348 e~v~~aqk~Ii~~c~~-aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
.. ......+..+++ .++|++.+ .+.-+ ..|+..++..|+|+|++.+
T Consensus 140 ~~--~~~~~~i~~i~~~~~~Pvi~~---------GGI~~---~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 140 FD--IGTFALVPEVRDAVDIPVIAA---------GGIAD---GRGIAAALALGADGVQMGT 186 (236)
T ss_pred cc--cCHHHHHHHHHHHhCCCEEEE---------CCCCC---HHHHHHHHHcCCcEEEEch
Confidence 10 112233343333 37898875 33333 3567777889999999864
No 71
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=91.19 E-value=0.55 Score=53.95 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=69.8
Q ss_pred CcEEEeccccCHHHHHHHHHHHHhcCC--------CceEEEEecChhhhccHHHHHhhc----------------CEEEE
Q 012928 281 VDFYAVSFVKDAKVVHELKDYLKSCNA--------DIHVIVKIESADSIPNLHSIISAS----------------DGAMV 336 (453)
Q Consensus 281 vd~I~lSfV~sa~dv~~v~~~L~~~~~--------~i~IIakIET~~gv~NldeI~~~s----------------DgImI 336 (453)
+.-+.+|+.++++||.++--+.+++|- .+.|++-.||.+.++|..+|+... --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 344678999999999998877776653 478999999999999999999851 27999
Q ss_pred eCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 337 ARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 337 gRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
|--|=+-+-|+ ..+..+|+++.+.|+++|+.+.+.
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 98887777776 468999999999999999998775
No 72
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=90.89 E-value=2.1 Score=45.69 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=106.5
Q ss_pred HHHHHHHHHhCCc-EEEeecCCCC-h----HHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCCceeecCCCEE
Q 012928 114 REMIWKLAEEGMN-VARLNMSHGD-H----ASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEF 187 (453)
Q Consensus 114 ~e~i~~Li~aGmn-vaRiNfSHg~-~----e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~~i~L~~G~~v 187 (453)
..+|+.|++.|.. |.= +||-. + +....+-.-....++.++ ++|...-|.-||+++- ..-.|+.|+.+
T Consensus 45 lpTI~~L~~~gak~vvl--~SHlGRP~g~~~~~~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~----~i~~l~~GeVl 117 (417)
T PTZ00005 45 LPTIKYLLEQGAKSVVL--MSHLGRPDGRRVEKYSLKPVVPKLEELLG-KKVTFLNDCVGPEVEE----ACANAKNGSVI 117 (417)
T ss_pred HHHHHHHHHCCCCEEEE--EecCCCCCCCcCcccCHHHHHHHHHHHHC-CCeEECCCCCCHHHHH----HHHcCCCCCEE
Confidence 3689999999986 544 68932 2 111122222233444555 8898888999988652 12357788887
Q ss_pred EEEeecCCCCccEEE--------eccc----ccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeec
Q 012928 188 NFTIKRGVSTEDTVS--------VNYD----DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (453)
Q Consensus 188 ~lt~~~~~~~~~~I~--------v~~~----~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnl 255 (453)
.|-.-+....+.... -|.+ .|.+.+.+---||++|.-=... ...-++
T Consensus 118 LLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDAFg~aH---R~haS~------------------ 176 (417)
T PTZ00005 118 LLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDAFGTAH---RAHSSM------------------ 176 (417)
T ss_pred EEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecchhhhh---hhcccc------------------
Confidence 775444322222111 0112 2666665544478887321100 000000
Q ss_pred CCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhccHHHHHhhcC
Q 012928 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASD 332 (453)
Q Consensus 256 p~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~II--akIET~~gv~NldeI~~~sD 332 (453)
+.+|... -+.+.-+ ..++..+.+.+...... +.|+ +||.+.-++ ++.++..+|
T Consensus 177 ----~gi~~~~---------------s~aG~lm---ekEl~~L~~~~~~p~rP~vaIlGGaKvsdKi~v--l~~Ll~k~D 232 (417)
T PTZ00005 177 ----VGVDLPV---------------KVAGFLM---KKELDYFSKALENPQRPFLAILGGAKVADKIQL--IKNLLDKVD 232 (417)
T ss_pred ----cccCCcc---------------chhhHHH---HHHHHHHHHHhcCCCCceEEEEcCccHHhHHHH--HHHHHHhcC
Confidence 0000000 0000000 12344444444322111 2333 477776555 677778899
Q ss_pred EEEEeCC--------CccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 333 GAMVARG--------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 333 gImIgRG--------DLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
.|++|-+ .-|.++|- ++....-+++++.|.+.|+++++-+
T Consensus 233 ~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPv 284 (417)
T PTZ00005 233 EMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPV 284 (417)
T ss_pred EEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCc
Confidence 9998843 33455553 2344455799999999998876543
No 73
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=90.84 E-value=9 Score=37.72 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=92.3
Q ss_pred HHHHHhhhhcCCcEEEeccccCH-HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDA-KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE 348 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa-~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e 348 (453)
...|+...+.|+|+|.+.+ +.. .++..+-+++++.|....|..+-.|+ ++.++.++...|.|++ ++++-|+.
T Consensus 72 ~~~i~~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf~ 144 (229)
T PRK09722 72 QDYIDQLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGFA 144 (229)
T ss_pred HHHHHHHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCCc
Confidence 3455555678999998764 543 46777778888989888888888885 5779999999998888 44554541
Q ss_pred ---CHHHHHHHHH---HHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC--CCHHHHHH
Q 012928 349 ---DVPLLQEDII---RRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVK 420 (453)
Q Consensus 349 ---~v~~aqk~Ii---~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G--~yP~eaV~ 420 (453)
-.+..-++|- +...++|..+.+. +.. --+.. -+......|+|.+++.+---.| +-|.++++
T Consensus 145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~ 213 (229)
T PRK09722 145 GQPFIPEMLDKIAELKALRERNGLEYLIE-------VDG-SCNQK---TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWD 213 (229)
T ss_pred chhccHHHHHHHHHHHHHHHhcCCCeEEE-------EEC-CCCHH---HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHH
Confidence 1223333332 2223456554332 122 22222 2446688899999986321234 35899999
Q ss_pred HHHHHHHHHh
Q 012928 421 VMHTVALRTE 430 (453)
Q Consensus 421 ~m~~I~~~aE 430 (453)
.|++...++.
T Consensus 214 ~l~~~~~~~~ 223 (229)
T PRK09722 214 IMTAQIEAAT 223 (229)
T ss_pred HHHHHHHHhh
Confidence 9998876664
No 74
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.83 E-value=4.9 Score=43.61 Aligned_cols=122 Identities=24% Similarity=0.242 Sum_probs=75.3
Q ss_pred hHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEE-EEecChhhhccHHHHHhhcCEEEEeCCCccc--
Q 012928 269 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVI-VKIESADSIPNLHSIISASDGAMVARGDLGA-- 343 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~II-akIET~~gv~NldeI~~~sDgImIgRGDLg~-- 343 (453)
+.+.++..++.|+|.|.+- .-++ ..+....+.+.+...++.|+ .-|-|++...++.+. -+|+|-+|=|--+.
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~~ 305 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSICT 305 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCcccc
Confidence 3566667778999988653 2222 33444445555544455544 678888877666542 37888775332121
Q ss_pred -----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 344 -----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 344 -----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
..|.+. ..+..++.++|++.++|+|. ..+..+ -.|++.|+..|||++|+.
T Consensus 306 ~r~~~~~g~p~-~~~~~~~~~~~~~~~~~via---------dGGi~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 306 TRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIA---------DGGIRY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred ceeecCCCcCH-HHHHHHHHHHhccCCCeEEE---------cCCCCC---HHHHHHHHHhCCCEEEEC
Confidence 222222 23345556667777888776 455555 467999999999999984
No 75
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=90.70 E-value=0.35 Score=52.33 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=86.2
Q ss_pred cCCcEEEeccccCHHHHHHHHHHHH----------------hcC-----CCceEEEEecChhhhccHHHHHhh----c--
Q 012928 279 NQVDFYAVSFVKDAKVVHELKDYLK----------------SCN-----ADIHVIVKIESADSIPNLHSIISA----S-- 331 (453)
Q Consensus 279 ~gvd~I~lSfV~sa~dv~~v~~~L~----------------~~~-----~~i~IIakIET~~gv~NldeI~~~----s-- 331 (453)
..+..|.+|++.+++++..+.+++. +.+ +.+.||+.||+..++-|+++|+.. .
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 4677899999999999998766542 221 468999999999999999999985 1
Q ss_pred C----EEEEeCCCccccCCCC----CHHHHHHHHHHHHHHcCCCEE--EEechhhhhcc--CCCCchHHHHHHHHHHHhC
Q 012928 332 D----GAMVARGDLGAELPIE----DVPLLQEDIIRRCRSMQKPVI--VATNMLESMID--HPTPTRAEVSDIAIAVREG 399 (453)
Q Consensus 332 D----gImIgRGDLg~elg~e----~v~~aqk~Ii~~c~~aGkpvi--~aTqmLeSM~~--~~~PtrAEv~Dv~nav~~G 399 (453)
+ -+|+||.|=++..|.- -+..|..++-+...+.|.|+. +-+. |.-. +-.|... ..+..- .-|
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~G---S~PFRG~l~p~~~--~~~~~E-Y~g 272 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGVG---SPPFRGGLSPPNV--ERVLEE-YPG 272 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-B---SSGGGT---TTGH--HHHHHH-TTT
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeeccC---CCCcCCCCChHhH--HHHHHh-cCC
Confidence 2 8999999999999972 234556777777789999964 3211 1111 1133332 222111 235
Q ss_pred ccEEEecCccc-CCCCHHHHHHHHHHHHHHHh
Q 012928 400 ADAVMLSGETA-HGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 400 ~D~vmLs~ETA-~G~yP~eaV~~m~~I~~~aE 430 (453)
+..+-+. +| .=.||.+-|+-..+.+.+..
T Consensus 273 v~T~TIQ--SAfrYD~p~~~v~~ai~~l~~~~ 302 (491)
T PF14010_consen 273 VYTFTIQ--SAFRYDYPYEEVIKAIEKLNEAP 302 (491)
T ss_dssp -SEEEE---HHHHHTTHHHHHHHHHHHHHHGG
T ss_pred eeEEEee--ehhhcCCCHHHHHHHHHHHHhcc
Confidence 5555543 22 34677776666655555543
No 76
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.36 E-value=18 Score=35.05 Aligned_cols=160 Identities=12% Similarity=0.055 Sum_probs=98.1
Q ss_pred CCCHhhHHH-HHhhhhcCCcEEEeccccCH------HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEE
Q 012928 264 SITDKDWED-IKFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAM 335 (453)
Q Consensus 264 ~ltekD~~D-I~~a~~~gvd~I~lSfV~sa------~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgIm 335 (453)
.+|..++.. ++...+.|++.|-+.+.... ++..++-+++.+.+.++.+.+..=+ +.+.++...+. .|.+.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 446666544 56666889999999888776 6666655666665555666555533 23444444444 46555
Q ss_pred Ee--CCCcccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCc
Q 012928 336 VA--RGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGE 408 (453)
Q Consensus 336 Ig--RGDLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~E 408 (453)
+. ..|.-.. .+.+.....-...++.++++|..+.+.+.. +..+.-+..++.+++. +...|+|.+.|. .
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-D 167 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVAKALEEAGADEISLK-D 167 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHHHHHHHcCCCEEEec-h
Confidence 43 1110000 122234555677888899999998776321 1111244455666554 566899999984 7
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 012928 409 TAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE 430 (453)
|.=...|.+.-++++.+..+..
T Consensus 168 t~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 168 TVGLATPEEVAELVKALREALP 189 (265)
T ss_pred hcCCcCHHHHHHHHHHHHHhCC
Confidence 7777889888888888776554
No 77
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.27 E-value=2.4 Score=46.01 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=81.4
Q ss_pred CCHhhHHHHHhhhhcCCcEEEe--ccccCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhhcCEEEEeCC--
Q 012928 265 ITDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARG-- 339 (453)
Q Consensus 265 ltekD~~DI~~a~~~gvd~I~l--SfV~sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~sDgImIgRG-- 339 (453)
+.+.+.+-+...++.|+|.|++ +.-++ +.+.++-+.+++...++.||+= +-|.++..++.+ .-+|+|-||=|
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g~G 298 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVGPG 298 (475)
T ss_pred eCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEECCcCC
Confidence 3455566667778899999887 33233 4444555566665567889985 888877766654 23788876532
Q ss_pred Cccc-----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 340 DLGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 340 DLg~-----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
=-.. ..|.+ -..+-....+++++.|+|+|- ..+..+ -.|++.|+..|+|+||+.+
T Consensus 299 s~~ttr~~~~~g~~-~~~a~~~~~~~~~~~~~~via---------dGgi~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 299 AMCTTRMMTGVGRP-QFSAVLECAAEARKLGGHVWA---------DGGVRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred ccccCccccCCCCc-hHHHHHHHHHHHHHcCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEeech
Confidence 1111 11222 223334566666888999775 455555 4689999999999999854
No 78
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.23 E-value=1.6 Score=46.45 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=85.1
Q ss_pred CHhhHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
.+.|+..+...++.|+|+|.+- --+|.-.+. .-+|+++.-.++.||+ .+=|.+=.+|| |.+-+||+-||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qie-mik~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLE-MIKYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHH-HHHHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 3567788888889999999884 223333443 4578888888888887 66666555554 4455999999855433
Q ss_pred ccCC-------CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 343 AELP-------IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 343 ~elg-------~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+.+- .+.. .+--++.+.|+..|.|||- ..+..+ +-+++.|+..|++.||+.
T Consensus 326 iCiTqevma~GrpQ~-TAVy~va~~A~q~gvpviA---------DGGiq~---~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 326 ICITQKVMACGRPQG-TAVYKVAEFANQFGVPCIA---------DGGIQN---VGHVVKALGLGASTVMMG 383 (503)
T ss_pred eeeeceeeeccCCcc-cchhhHHHHHHhcCCceee---------cCCcCc---cchhHhhhhcCchhheec
Confidence 3322 1211 2335677889999999885 333333 678899999999999963
No 79
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=89.52 E-value=7.7 Score=38.34 Aligned_cols=63 Identities=19% Similarity=0.391 Sum_probs=42.1
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE--Eec--C-hhhhccHHHHHhh-cCEEEEeCCCc
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIE--S-ADSIPNLHSIISA-SDGAMVARGDL 341 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa--kIE--T-~~gv~NldeI~~~-sDgImIgRGDL 341 (453)
..+.+.|+|||..+|.. ++..++++.... .++|++ -|= | .++++|+++++++ ++|+.++|.=+
T Consensus 163 ~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~ 231 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF 231 (258)
T ss_pred HHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh
Confidence 55678999999999864 455555555432 355544 232 2 3457788888887 88999887644
No 80
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.48 E-value=24 Score=35.28 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=69.4
Q ss_pred HhhHHHH-HhhhhcCCcEEEecc------------ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh---
Q 012928 267 DKDWEDI-KFGVDNQVDFYAVSF------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--- 330 (453)
Q Consensus 267 ekD~~DI-~~a~~~gvd~I~lSf------------V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--- 330 (453)
.+|..+. +.+.+.|+|+|-+.| -.+++.+.++-+.+.+. -+++|++|| ++ .+++..+|++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHH
Confidence 3444433 444567899986633 34455554444444432 268899998 32 23345555542
Q ss_pred --cCEEEEe-----CC-Cccc-------cC----CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHH
Q 012928 331 --SDGAMVA-----RG-DLGA-------EL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (453)
Q Consensus 331 --sDgImIg-----RG-DLg~-------el----g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~D 391 (453)
+|+|.+- +. |+.. .. |...-+.....+-......++|+|.. ...-+ ..|
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~---------GGI~~---~~d 245 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV---------GGIAS---GED 245 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE---------CCCCC---HHH
Confidence 5887652 11 2210 11 11111222333333344457888764 33333 356
Q ss_pred HHHHHHhCccEEEecCcccC
Q 012928 392 IAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~ 411 (453)
+..++..|+|+|++...--.
T Consensus 246 a~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHHHHcCCCEEEEchhhhc
Confidence 77889999999999754333
No 81
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.41 E-value=25 Score=35.15 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=96.9
Q ss_pred ecCCCccCCCCCCHhhHHHHHhh-hhcCCcEEEeccccCHHH----------HHHHHHHHHhcCCCceEEEEecChhhhc
Q 012928 254 NVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSFVKDAKV----------VHELKDYLKSCNADIHVIVKIESADSIP 322 (453)
Q Consensus 254 nlp~~~~~lp~ltekD~~DI~~a-~~~gvd~I~lSfV~sa~d----------v~~v~~~L~~~~~~i~IIakIET~~gv~ 322 (453)
..|+.. +|..++..|... -+.|+|+|=+.|....+. ...++.+......+.++.+..-....
T Consensus 11 q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-- 83 (266)
T cd07944 11 YVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND-- 83 (266)
T ss_pred cccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC--
Confidence 455554 467777777554 468999998877654321 34444444332236777777766542
Q ss_pred cHHHHHhh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHH
Q 012928 323 NLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVR 397 (453)
Q Consensus 323 NldeI~~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~ 397 (453)
++++|..+ .|.|-++ .+...+ .....+++.++++|..|.+. +.....-+..++.+.+. +..
T Consensus 84 ~~~~l~~a~~~gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~------~~~a~~~~~~~~~~~~~~~~~ 149 (266)
T cd07944 84 DIDLLEPASGSVVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN------LMAISGYSDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHhcCCcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE------EEeecCCCHHHHHHHHHHHHh
Confidence 23444433 4666664 233333 34467788899999887764 12223345556666654 455
Q ss_pred hCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.|+|.+.| .+|.=..+|.+.-++++.+..+.
T Consensus 150 ~g~~~i~l-~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 150 IKPDVFYI-VDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CCCCEEEE-ecCCCCCCHHHHHHHHHHHHHhc
Confidence 79999999 48988999999888888886554
No 82
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.14 E-value=17 Score=34.31 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=77.0
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCC-C-
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I- 347 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg-~- 347 (453)
.+.+..+.+.|+|+|.++--.. ++.....+.+...+ ..++.-+......+.+.++...+|.+.++.-+-|..-. +
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 150 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEAS-EHIHRLLQLIKSAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFI 150 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccc-hhHHHHHHHHHHcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCccccc
Confidence 3455555688999988886554 33333444444444 34444553233466677787778988776533322211 0
Q ss_pred CCHHHHHHHHHHHHHHcCC-C-EEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHH
Q 012928 348 EDVPLLQEDIIRRCRSMQK-P-VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (453)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGk-p-vi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (453)
+......+++...+..++. + +.++ . --+.. ++..+...|+|++.+.+.-..=.-|.++++.++++
T Consensus 151 ~~~~~~i~~~~~~~~~~~~~~~i~v~--------G--GI~~~---nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 151 PEVLEKIRELRKLIDERGLDILIEVD--------G--GINAD---NIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEE--------C--CCCHH---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 1111222233333333333 3 3343 1 22222 45555668999999986655556799998888775
No 83
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.10 E-value=16 Score=35.34 Aligned_cols=151 Identities=11% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCCCCHhhHHHHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh--cCEEEEe
Q 012928 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVA 337 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--sDgImIg 337 (453)
+.+.+...=...++.+.+.|+|+|.+..-. ..+......+.+.+.|..+.+...=.| -++.+.+++.. +|.+.++
T Consensus 69 ~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~ 146 (229)
T PLN02334 69 DCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVM 146 (229)
T ss_pred EEEeccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEE
Confidence 444455311223445578899999777542 223333333344444544444432223 34557777788 8999886
Q ss_pred CCCccccCCCCCH-HHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC
Q 012928 338 RGDLGAELPIEDV-PLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (453)
Q Consensus 338 RGDLg~elg~e~v-~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (453)
+-.=+..- ... +....++ ...++. ++|+.+. .+ -+ ...+......|+|++.+.+.-..-+.
T Consensus 147 ~v~pg~~~--~~~~~~~~~~i-~~~~~~~~~~~I~a~---------GG-I~---~e~i~~l~~aGad~vvvgsai~~~~d 210 (229)
T PLN02334 147 SVEPGFGG--QSFIPSMMDKV-RALRKKYPELDIEVD---------GG-VG---PSTIDKAAEAGANVIVAGSAVFGAPD 210 (229)
T ss_pred EEecCCCc--cccCHHHHHHH-HHHHHhCCCCcEEEe---------CC-CC---HHHHHHHHHcCCCEEEEChHHhCCCC
Confidence 43322111 111 2222233 223332 4565543 11 23 23466778899999998766544467
Q ss_pred HHHHHHHHHHHHHHH
Q 012928 415 PLKAVKVMHTVALRT 429 (453)
Q Consensus 415 P~eaV~~m~~I~~~a 429 (453)
|.++++.+++.+.++
T Consensus 211 ~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 211 YAEVISGLRASVEKA 225 (229)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877665
No 84
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.08 E-value=14 Score=34.39 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceE-EEEecChhhhccHHHHHh-hcCEEEEeCCCccccCCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHV-IVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~I-IakIET~~gv~NldeI~~-~sDgImIgRGDLg~elg~e~ 349 (453)
.++.+.+.|+|+|.++.-...+...++.+++++.|-.+.+ +..-.|+.-+. +++. -+|.+.+.++--+...|.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCEEEEcCcccccccCCCC
Confidence 3466678999999988755555566677777665433222 13445554332 2444 47988886542222222122
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHH
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 420 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~ 420 (453)
....-+++.. ....|+.+. .+. + ...+..+...|+|++.+.+--..-.-|.++++
T Consensus 146 ~~~~i~~~~~---~~~~~i~~~---------GGI-~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PEDDLKKVKK---LLGVKVAVA---------GGI-T---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CHHHHHHHHh---hcCCCEEEE---------CCc-C---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2222222222 256776653 222 3 23577888899999998755434445666654
No 85
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=89.08 E-value=11 Score=35.31 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=76.5
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCC-C-CC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-ED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg-~-e~ 349 (453)
.++.+.+.|+|+|.++--. .++.....+.+.+.+....+ -++.....+.+.++...+|.+.+..-+-+..=. + +.
T Consensus 71 ~~~~~~~~gadgv~vh~~~-~~~~~~~~~~~~~~g~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 71 YIEDFAEAGADIITVHPEA-SEHIHRLLQLIKDLGAKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred HHHHHHHcCCCEEEEccCC-chhHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 3556668999998886433 33444444556555555443 355444577788887778998886543322111 1 11
Q ss_pred HHHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHH
Q 012928 350 VPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (453)
Q Consensus 350 v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (453)
.....+++.+..++. ++|+.++ .+. + ...+..++..|+|++.+.+..-.-.-|.++++.+
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~---------GGI-~---~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVD---------GGV-N---DDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE---------CCc-C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 112223333333333 3566554 222 3 2446677889999999886654445577776643
No 86
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.88 E-value=11 Score=38.21 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=70.7
Q ss_pred HhhHHHH-HhhhhcCCcEEEecc----c-----------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh
Q 012928 267 DKDWEDI-KFGVDNQVDFYAVSF----V-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 267 ekD~~DI-~~a~~~gvd~I~lSf----V-----------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
..|+.+. +.+.+.|+|+|-+.+ + ++++.+.++-+.+.+ ..+++|++||- + .+.++.++++.
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~Pv~vKl~-~-~~~~~~~~a~~ 188 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE-AVKIPVIAKLT-P-NITDIREIARA 188 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH-hcCCCeEEECC-C-CchhHHHHHHH
Confidence 3455444 333345888876522 2 334445544444443 23588999994 2 44566667663
Q ss_pred -----cCEEEEe-----CCCcc---------c----cC----CCCCHHHHHHHHHHHHHHc--CCCEEEEechhhhhccC
Q 012928 331 -----SDGAMVA-----RGDLG---------A----EL----PIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDH 381 (453)
Q Consensus 331 -----sDgImIg-----RGDLg---------~----el----g~e~v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~ 381 (453)
+|+|.+. +-++- + .. |....+...+.+-+..++. ..|+|-. .
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~---------G 259 (299)
T cd02940 189 AKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGI---------G 259 (299)
T ss_pred HHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEE---------C
Confidence 6888742 11110 0 01 1122344555555555555 5676653 3
Q ss_pred CCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 382 PTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 382 ~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
+.-+ ..|+..++..|+|+||+...
T Consensus 260 GI~~---~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 260 GIES---WEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred CCCC---HHHHHHHHHcCCChheEcee
Confidence 3333 56888999999999999744
No 87
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.61 E-value=13 Score=39.30 Aligned_cols=127 Identities=19% Similarity=0.248 Sum_probs=71.0
Q ss_pred HhhHHHHHh-hhhcCCcEEEecc-----c----------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh
Q 012928 267 DKDWEDIKF-GVDNQVDFYAVSF-----V----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 267 ekD~~DI~~-a~~~gvd~I~lSf-----V----------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
+.++.+... .-+.|+|+|-+.+ + +.++.+.++-+.+.+. .+++|++||= + .+.++.+|+++
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~ 188 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARA 188 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHH
Confidence 344544433 2346788876532 1 2334444444444332 3689999994 3 45567777764
Q ss_pred -----cCEEEE-----eCC--Ccc-----------ccC----CCCCHHHHHHHHHHHHHHc---CCCEEEEechhhhhcc
Q 012928 331 -----SDGAMV-----ARG--DLG-----------AEL----PIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMID 380 (453)
Q Consensus 331 -----sDgImI-----gRG--DLg-----------~el----g~e~v~~aqk~Ii~~c~~a---Gkpvi~aTqmLeSM~~ 380 (453)
+|||.+ +|- |+- ... |....+...+.|-...++. ..|+|-.
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~--------- 259 (420)
T PRK08318 189 AKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI--------- 259 (420)
T ss_pred HHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee---------
Confidence 688883 221 110 011 2123444555555555554 4566642
Q ss_pred CCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 381 HPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 381 ~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
.+.-+ ..|+..++..|+|+||+...
T Consensus 260 GGI~s---~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 260 GGIET---WRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred cCcCC---HHHHHHHHHhCCChheeeee
Confidence 33333 56888999999999999733
No 88
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.21 E-value=10 Score=38.30 Aligned_cols=167 Identities=13% Similarity=0.021 Sum_probs=100.4
Q ss_pred cceeecCCCccCCCCCCHhhHHHHHhhh-h-cCCcEEEec-cccCHHHHHHHHHHHHhcC-----CCceEEEEecChhhh
Q 012928 250 RRHLNVRGKSANLPSITDKDWEDIKFGV-D-NQVDFYAVS-FVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSI 321 (453)
Q Consensus 250 ~KgVnlp~~~~~lp~ltekD~~DI~~a~-~-~gvd~I~lS-fV~sa~dv~~v~~~L~~~~-----~~i~IIakIET~~gv 321 (453)
|-|..-|+.. +|.+++..|...+ + .|++.|=+. |.-++++.+.+++..+... ....+++.+....++
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 80 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV 80 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH
Confidence 3344445443 4677777776653 4 499999775 4478977777776654221 145666665554443
Q ss_pred ccHHHHHhh-cCEEEE--eCCCcccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCC-CCchHHHHHHH
Q 012928 322 PNLHSIISA-SDGAMV--ARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIA 393 (453)
Q Consensus 322 ~NldeI~~~-sDgImI--gRGDLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~-~PtrAEv~Dv~ 393 (453)
+..++. .+.|-+ .-.|.-.. ...++.....+++++.|+++|..+.+.-. ...+| +-+...+.+++
T Consensus 81 ---~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~----d~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 81 ---DWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE----DWSNGMRDSPDYVFQLV 153 (280)
T ss_pred ---HHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE----eCCCCCcCCHHHHHHHH
Confidence 333333 454433 32333221 12245556668889999999998766422 11112 11233455555
Q ss_pred H-HHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 394 n-av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
. +...|+|.+-| .+|.=...|.+..++++.+..+.
T Consensus 154 ~~~~~~G~~~i~l-~DT~G~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 154 DFLSDLPIKRIML-PDTLGILSPFETYTYISDMVKRY 189 (280)
T ss_pred HHHHHcCCCEEEe-cCCCCCCCHHHHHHHHHHHHhhC
Confidence 4 45579999998 48888889999999988886543
No 89
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=87.80 E-value=7.8 Score=38.57 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCCCHhhHH-HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh----------ccHHHHHhh-
Q 012928 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI----------PNLHSIISA- 330 (453)
Q Consensus 263 p~ltekD~~-DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv----------~NldeI~~~- 330 (453)
|.-+..|.+ -++.+++.|+|.|+++. ..+...+..+ +.++.++.+|++..++ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 555666764 44778889999998873 3333333323 3457788898854333 224555544
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
+|.+.+--.... ....++....+++.+.|++.|.|+++-
T Consensus 107 ad~v~~~~~~g~--~~~~~~~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 107 ADAVSVHVNVGS--ETEAEMLEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred CCEEEEEEecCC--hhHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 565444211110 012345666688889999999998763
No 90
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=87.56 E-value=2.3 Score=41.38 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCCHh-hH-HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh-----hh-----hccHHHHHhh
Q 012928 263 PSITDK-DW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-----DS-----IPNLHSIISA 330 (453)
Q Consensus 263 p~ltek-D~-~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~-----~g-----v~NldeI~~~ 330 (453)
|.++.. |. +.++.+++.+++.|+++ +..+...++.+...+..+.++.....- .. +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344554 54 55677889999999886 445666666664434456666666532 22 4445555544
Q ss_pred -cCEEEEe--CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH---------HHHHHH-HHH
Q 012928 331 -SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---------VSDIAI-AVR 397 (453)
Q Consensus 331 -sDgImIg--RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE---------v~Dv~n-av~ 397 (453)
+|+|-+- .+-+.-.- ...+.....++++.|+.+|.|+|+= +.|+..+ +...++ +..
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE----------~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE----------PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE----------ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE----------EecCchhhcccccHHHHHHHHHHHHH
Confidence 5654432 11111110 1345666689999999999999873 4445444 333333 467
Q ss_pred hCccEEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
.|+|.+=.+.-.. ...-.+.++.|++++..+.
T Consensus 158 ~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 158 LGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp TT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred hCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 8999988764434 5556789999999988654
No 91
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.03 E-value=14 Score=38.08 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=74.5
Q ss_pred hHHHH-HhhhhcCCcEEEeccc--cC-----HHHH-HHHHHHHHhc--CCCceEEEEecChhhhccHHHHHhh-----cC
Q 012928 269 DWEDI-KFGVDNQVDFYAVSFV--KD-----AKVV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----SD 332 (453)
Q Consensus 269 D~~DI-~~a~~~gvd~I~lSfV--~s-----a~dv-~~v~~~L~~~--~~~i~IIakIET~~gv~NldeI~~~-----sD 332 (453)
+..++ +.+.+.|+|+|-+.+- .. ..+. ..+.+.+... ..+++|++|+ ++ .+.++.++++. +|
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~d 192 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGAD 192 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCC
Confidence 43333 3344568999877331 11 1111 1123333322 2368899997 33 33445555553 68
Q ss_pred EEEEeCCCccccCC-----------C---CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHh
Q 012928 333 GAMVARGDLGAELP-----------I---EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (453)
Q Consensus 333 gImIgRGDLg~elg-----------~---e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (453)
||.+.-.=.+..+. + .-.+.+.+.+-+..+..+.|+|-. .+.-+ ..|+..++..
T Consensus 193 gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~---------GGI~s---~~Da~e~l~a 260 (334)
T PRK07565 193 GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT---------TGVHD---AEDVIKMLLA 260 (334)
T ss_pred eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE---------CCCCC---HHHHHHHHHc
Confidence 87664221111111 1 123444444444444457776653 44444 5678899999
Q ss_pred CccEEEecCcccC-CCCHHHHHHHHHHHHHHHhcC
Q 012928 399 GADAVMLSGETAH-GKFPLKAVKVMHTVALRTESS 432 (453)
Q Consensus 399 G~D~vmLs~ETA~-G~yP~eaV~~m~~I~~~aE~~ 432 (453)
|||+|++...--. | | +++.+|+++.+..
T Consensus 261 GA~~V~v~t~~~~~g--~----~~~~~i~~~L~~~ 289 (334)
T PRK07565 261 GADVVMIASALLRHG--P----DYIGTILRGLEDW 289 (334)
T ss_pred CCCceeeehHHhhhC--c----HHHHHHHHHHHHH
Confidence 9999999744333 2 2 3455555555543
No 92
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=86.98 E-value=3.9 Score=38.96 Aligned_cols=131 Identities=12% Similarity=0.126 Sum_probs=74.6
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccH----HHHHhh-----cCEEEEeCCCcccc
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNL----HSIISA-----SDGAMVARGDLGAE 344 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~Nl----deI~~~-----sDgImIgRGDLg~e 344 (453)
+.+.+.|+|+|.+..--..+.+..+.+++++.|..+.+....+++.+++.+ +.++.. .||..+.+..
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~---- 149 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR---- 149 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc----
Confidence 445678999999987644455777777777777766666666776666643 333322 2444432211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-EEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 345 LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGkp-vi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
++++..+.+ ..+.. .++. . .-.+ +-..+..++..|+|.+++..---...-|.++++.|+
T Consensus 150 --~~~i~~l~~-------~~~~~~~ivd-g-------GI~~---~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 150 --PERVRYIRS-------RLGDELKIIS-P-------GIGA---QGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred --chhHHHHHH-------hcCCCcEEEe-C-------CcCC---CCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 123322221 12222 2221 1 1111 111255777889999988754333456999999998
Q ss_pred HHHHH
Q 012928 424 TVALR 428 (453)
Q Consensus 424 ~I~~~ 428 (453)
+.+++
T Consensus 210 ~~~~~ 214 (215)
T PRK13813 210 EEIRG 214 (215)
T ss_pred HHHhc
Confidence 87654
No 93
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=86.94 E-value=8.4 Score=37.66 Aligned_cols=148 Identities=20% Similarity=0.160 Sum_probs=89.8
Q ss_pred CCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-----cCEEE
Q 012928 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAM 335 (453)
Q Consensus 262 lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-----sDgIm 335 (453)
-|..|+.|.+.+ +.+.++++..|+++ +..+..++++|. +..+.|.+-|==|.|....+.-+.. .||.-
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~ 89 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGAD 89 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCc
Confidence 478888888655 77889999999886 778888888883 5668888888777776555544332 12211
Q ss_pred EeCCCccccCCC---CCHHHHHHHHHHHHHH-cCCC--EEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCc
Q 012928 336 VARGDLGAELPI---EDVPLLQEDIIRRCRS-MQKP--VIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGE 408 (453)
Q Consensus 336 IgRGDLg~elg~---e~v~~aqk~Ii~~c~~-aGkp--vi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~E 408 (453)
- =|+.+.++. .++..+.++|...... .+++ +|+ ..+.-+..|+.++.. ++..|+|.+--|.-
T Consensus 90 E--iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIl---------Et~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 90 E--IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVII---------ETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred e--EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEe---------ecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 0 123333332 2344444444433332 3443 343 456667777777766 66789996655433
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 012928 409 TAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~ 426 (453)
-+.|---.+.|+.|++.+
T Consensus 159 ~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 159 FSTGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 222223478888888765
No 94
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.65 E-value=25 Score=32.07 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=66.4
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC-CceEEEEecCh-------hhhccHHHHHhh-cCEEEEeCCCc
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESA-------DSIPNLHSIISA-SDGAMVARGDL 341 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~-~i~IIakIET~-------~gv~NldeI~~~-sDgImIgRGDL 341 (453)
+.+++.++.|+|+|.+.- +-++.+++ ..+. ++++++++=.. +.++..++..+. +|++++...-
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~---~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~- 88 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAAD---ALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI- 88 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHH---HhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH-
Confidence 444777889999998774 33333333 3344 78899998554 455555555554 7999985211
Q ss_pred cccCC--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCC--chHHHHHHHH-HHHhCccEEEec
Q 012928 342 GAELP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP--TRAEVSDIAI-AVREGADAVMLS 406 (453)
Q Consensus 342 g~elg--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~P--trAEv~Dv~n-av~~G~D~vmLs 406 (453)
..... .+.+...-+++...| +.+.|+++. ..|.. +..++...++ +...|+|++=.+
T Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy--------~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 89 GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI--------LETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE--------EECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 10001 122333334455544 468998874 12221 2233444433 245799998665
No 95
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=86.34 E-value=13 Score=39.63 Aligned_cols=133 Identities=16% Similarity=0.125 Sum_probs=81.4
Q ss_pred HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeC-CCccccCCCCCHH
Q 012928 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-GDLGAELPIEDVP 351 (453)
Q Consensus 273 I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgR-GDLg~elg~e~v~ 351 (453)
++.+.+.|+|++.+...-..+.+....+.+++.|..+.+ -.+.....++.++++....|.+.+.+ -|=+ +.....
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~---~~~~~~ 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEE---GTEHAW 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCC---cccchH
Confidence 445568999999998766656677777778777644433 04444445566777755689888876 2322 111111
Q ss_pred HHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHH
Q 012928 352 LLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 352 ~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (453)
++ ++..++. +.++.++ +--+ ...+..++..|+|.+++.+--..-+-|.++++.+++.+
T Consensus 319 ---~k-I~~ikk~~~~~~I~Vd----------GGI~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 319 ---GN-IKEIKKAGGKILVAVA----------GGVR---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ---HH-HHHHHHhCCCCcEEEE----------CCcC---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 12 2223332 3455654 2222 23466778899999988655334467999999888775
No 96
>PLN03034 phosphoglycerate kinase; Provisional
Probab=86.33 E-value=3.1 Score=45.10 Aligned_cols=203 Identities=17% Similarity=0.150 Sum_probs=111.7
Q ss_pred HHHHHHHHhCCcEEEeecCCCChH----HHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCCCceeecCCCEEEEE
Q 012928 115 EMIWKLAEEGMNVARLNMSHGDHA----SHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFT 190 (453)
Q Consensus 115 e~i~~Li~aGmnvaRiNfSHg~~e----~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~~~i~L~~G~~v~lt 190 (453)
.+|+.|++.|..|.=+ ||-..- ....+-.-....++.++ ++|...=|.-||+++-- --.++.|+.+.|-
T Consensus 122 pTI~~L~~~gakvVl~--SHlGRPkg~~~~~SL~pva~~Ls~lL~-~~V~fv~d~~G~~~~~~----i~~l~~GeVlLLE 194 (481)
T PLN03034 122 PTIKYLISNGAKVILS--SHLGRPKGVTPKFSLAPLVPRLSELLG-IQVVKADDCIGPEVEKL----VASLPEGGVLLLE 194 (481)
T ss_pred HHHHHHHHCCCeEEEE--EecCCCCCCCcccCHHHHHHHHHHHhC-CCeEECCCCCCHHHHHH----HhcCCCCcEEEEe
Confidence 5899999999987764 885422 11122222333445555 89988888889887621 1356788887776
Q ss_pred eecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecCCCccCCCCCCHhhH
Q 012928 191 IKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDW 270 (453)
Q Consensus 191 ~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~ 270 (453)
.-+....+.. |.++|.+.+.+.--||++|.-=... -.-+.+. .
T Consensus 195 NvRF~~eE~~---nd~~fa~~LA~l~DiyVNDAFgtaH-------------------------------R~haS~v--G- 237 (481)
T PLN03034 195 NVRFYKEEEK---NEPEFAKKLASLADLYVNDAFGTAH-------------------------------RAHASTE--G- 237 (481)
T ss_pred ccCcCccccc---CcHHHHHHHHhhCCEEEecchhhhH-------------------------------hcccchh--h-
Confidence 5443333221 4457777776655588888321000 0000000 0
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhccHHHHHhhcCEEEEeCC-------C
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASDGAMVARG-------D 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~II--akIET~~gv~NldeI~~~sDgImIgRG-------D 340 (453)
+...++ .-+.+.- =..++..+.+.+...... +.|+ +||.+.-++ ++.++..+|.+++|-+ -
T Consensus 238 --i~~~l~--ps~aG~L---mekEl~~L~k~~~~p~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFl~A 308 (481)
T PLN03034 238 --VTKFLK--PSVAGFL---LQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGV--IESLLEKCDILLLGGGMIFTFYKA 308 (481)
T ss_pred --hhhhcC--cchhhHH---HHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHH
Confidence 000000 0000000 012333344444322221 2333 588887666 7778888999999854 4
Q ss_pred ccccCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 012928 341 LGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 341 Lg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
+|.++|- ++....-++|++.+++.|+.+++
T Consensus 309 ~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~l 342 (481)
T PLN03034 309 QGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLL 342 (481)
T ss_pred cCCCcchhhcChhhhHHHHHHHHHHHhcCCEEEC
Confidence 5666664 23445557999999999887665
No 97
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=85.90 E-value=29 Score=34.20 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC--CceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE 348 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~--~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e 348 (453)
+.|+.-.+.|+|.|.+.+ ++..++.+.-+++++.|. ...+..+=+| -++.++.++...|.|++ ++++=|+.
T Consensus 82 ~~i~~~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGfg 154 (228)
T PRK08091 82 EVAKACVAAGADIVTLQV-EQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRTG 154 (228)
T ss_pred HHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCCC
Confidence 455555688999998864 666677777788888888 7777777777 46788999999998888 34444441
Q ss_pred ---CHHHHHHHHHH---HHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC-CCHHHHHHH
Q 012928 349 ---DVPLLQEDIIR---RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG-KFPLKAVKV 421 (453)
Q Consensus 349 ---~v~~aqk~Ii~---~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G-~yP~eaV~~ 421 (453)
=.+..-++|.+ .-.++|.-+.+. +.. .-+.. -+......|+|.+++.+-- .| .-|.++++.
T Consensus 155 GQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie-------VDG-GI~~~---ti~~l~~aGaD~~V~GSal-F~~~d~~~~i~~ 222 (228)
T PRK08091 155 TKAPSDLILDRVIQVENRLGNRRVEKLIS-------IDG-SMTLE---LASYLKQHQIDWVVSGSAL-FSQGELKTTLKE 222 (228)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCceEE-------EEC-CCCHH---HHHHHHHCCCCEEEEChhh-hCCCCHHHHHHH
Confidence 12222222222 222345333331 122 22222 2446788899998875332 23 347888888
Q ss_pred HHHH
Q 012928 422 MHTV 425 (453)
Q Consensus 422 m~~I 425 (453)
+++.
T Consensus 223 l~~~ 226 (228)
T PRK08091 223 WKSS 226 (228)
T ss_pred HHHh
Confidence 7764
No 98
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=85.85 E-value=31 Score=33.18 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=92.1
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEec-cccCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhcc-HHHHHhh-cC--EEEEe
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIPN-LHSIISA-SD--GAMVA 337 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lS-fV~sa~dv~~v~~~L~~~~~~i~IIakIET-~~gv~N-ldeI~~~-sD--gImIg 337 (453)
++..++..| +...+.|+|.|=+. ..-+.++...++.+.+.... ..+.+.+-. .+.++. ++.+... .| .+++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 566676555 45567899998777 33567777777766544322 333333322 122222 2222222 45 44444
Q ss_pred CCCccccC--C--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH-hCccEEEecCcccCC
Q 012928 338 RGDLGAEL--P--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 412 (453)
Q Consensus 338 RGDLg~el--g--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G 412 (453)
-.|+-... + .++......+++..+++.|..+.+... .....+..++.+.+..+. .|+|.+.| .+|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l-~Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYL-ADTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEE-EETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEe-eCccCC
Confidence 44432221 1 134455667889999999999876532 334556667777766665 49999998 488888
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012928 413 KFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE 430 (453)
..|.+.-+.++.+-.+.-
T Consensus 163 ~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 163 MTPEDVAELVRALREALP 180 (237)
T ss_dssp S-HHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 889888887777766544
No 99
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=85.81 E-value=20 Score=35.60 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred HhhH-HHHHhhhhcCCcEEEeccc-----------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----
Q 012928 267 DKDW-EDIKFGVDNQVDFYAVSFV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---- 330 (453)
Q Consensus 267 ekD~-~DI~~a~~~gvd~I~lSfV-----------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~---- 330 (453)
..|. +..+.+.+.|+|+|-+.+- ++++.+.++-+.+.+. -+.+|++|+-.....+...++++.
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3444 4445566779999877532 2344454444444432 267899998775544455555543
Q ss_pred -cCEEEEeCCCcc--cc------------CCC---CCHHHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHH
Q 012928 331 -SDGAMVARGDLG--AE------------LPI---EDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVS 390 (453)
Q Consensus 331 -sDgImIgRGDLg--~e------------lg~---e~v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~ 390 (453)
+|+|.+.-+-.+ .. -|+ .-.+.....+-+..... ++|++.. .+.-+ ..
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~---------GGI~~---~~ 256 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV---------GGIDS---GE 256 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE---------CCCCC---HH
Confidence 688887522111 00 011 11122333333444444 6787764 33333 35
Q ss_pred HHHHHHHhCccEEEecC
Q 012928 391 DIAIAVREGADAVMLSG 407 (453)
Q Consensus 391 Dv~nav~~G~D~vmLs~ 407 (453)
|+..++..|+|+|++..
T Consensus 257 da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 257 DVLEMLMAGASAVQVAT 273 (289)
T ss_pred HHHHHHHcCccHheEcH
Confidence 67788889999999963
No 100
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.67 E-value=24 Score=34.62 Aligned_cols=100 Identities=19% Similarity=0.271 Sum_probs=56.9
Q ss_pred CCCCCCHhhHHHHHhhhhcCCcEEE--ecc---ccCHHHHHHH--------------HHHHHhcC--CCceEEEEec-Ch
Q 012928 261 NLPSITDKDWEDIKFGVDNQVDFYA--VSF---VKDAKVVHEL--------------KDYLKSCN--ADIHVIVKIE-SA 318 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~~~gvd~I~--lSf---V~sa~dv~~v--------------~~~L~~~~--~~i~IIakIE-T~ 318 (453)
..|.+ +.-.+.++...+.|+|++= +|| +-+...+..+ -+.+++.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 34554 3334556666678999864 455 3344444421 11222211 2456666666 43
Q ss_pred ---hhhccHHHHHh-h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 319 ---DSIPNLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 319 ---~gv~NldeI~~-~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.|++++-+-++ + +||+.+- || ++ .-.++++..|+++|...+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~----ee~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PP----EEAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEEE
Confidence 24454444343 3 7999994 55 33 25678999999999987764
No 101
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=85.64 E-value=12 Score=41.53 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=104.2
Q ss_pred HhhHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEEEec--ChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 267 DKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIakIE--T~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
+...+.|....+.|.+.|-+. -.+.|+.+..+++.|.+.|.+++++|-|- -..|+..+ +.+|.|=|-||.++
T Consensus 45 ~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~----~~vdkiRINPGNi~ 120 (606)
T PRK00694 45 DGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVA----DFVDKVRINPGNYV 120 (606)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHH----HhcCceEECCcccC
Confidence 444555666678899987654 44556666667777777888999999883 23333222 23899999999997
Q ss_pred cc---------------CCCCCHHHHHHHHHHHHHHcCCCEEEEec--hhhh-hccCCCCchHH-----HHHHHHHHHhC
Q 012928 343 AE---------------LPIEDVPLLQEDIIRRCRSMQKPVIVATN--MLES-MIDHPTPTRAE-----VSDIAIAVREG 399 (453)
Q Consensus 343 ~e---------------lg~e~v~~aqk~Ii~~c~~aGkpvi~aTq--mLeS-M~~~~~PtrAE-----v~Dv~nav~~G 399 (453)
-. -.++++..--..++.+|+++|+|+=+-++ =|+. +...-.+|..- +.-+--+-..|
T Consensus 121 ~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~ 200 (606)
T PRK00694 121 DKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLD 200 (606)
T ss_pred CccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence 51 12245666678999999999999765543 1211 11111123222 23344455689
Q ss_pred ccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCC
Q 012928 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (453)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (453)
++=+.+| .+--.|...|+.-+.++.+.++.-
T Consensus 201 f~diviS---~KsSnv~~mi~AyrlLa~~~d~eg 231 (606)
T PRK00694 201 YRDVVFS---MKSSNPKVMVAAYRQLAKDLDARG 231 (606)
T ss_pred CCcEEEE---EEcCCHHHHHHHHHHHHHHhhccC
Confidence 9999998 566678888888888888877543
No 102
>PRK04302 triosephosphate isomerase; Provisional
Probab=85.47 E-value=14 Score=35.72 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=76.4
Q ss_pred HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCc-cccCCCC-
Q 012928 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL-GAELPIE- 348 (453)
Q Consensus 273 I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDL-g~elg~e- 348 (453)
++.+.+.|+|+|.++..++.....++.+.+..+. .++.+|. ++.+ .+.+..+... .|.|-+.+-++ |...+..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~-~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNN-PETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCC-HHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 4555678999999998644443444444443221 2444554 3333 3344444433 45555555433 3322321
Q ss_pred CHHHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 349 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
..+....++++..++. +.|++.. .+.-+ -.++..+...|+|+++..+.-..-..|.+.++-+.
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~G---------ggI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLCG---------AGIST---GEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEE---------CCCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 2344455666667764 5677653 33333 34556677899999999877777777777766544
No 103
>PRK08227 autoinducer 2 aldolase; Validated
Probab=85.39 E-value=6 Score=39.81 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=81.2
Q ss_pred HHHHhhhhcCCcEEEecc-ccCHH---HHHHHHHHHHhcC-CCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccC
Q 012928 271 EDIKFGVDNQVDFYAVSF-VKDAK---VVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL 345 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf-V~sa~---dv~~v~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~el 345 (453)
-+++.|++.|+|.|.+.. +-+.. -+.++.+...++. ..+++++...-...+.|=.++++.+-.+ | .+||+++
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRi--a-aELGADi 174 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRI--A-AEMGAQI 174 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHH--H-HHHcCCE
Confidence 345568899999887732 22322 3333334334433 3567777332222244433333322110 0 2333222
Q ss_pred ---CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCC-CchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHH
Q 012928 346 ---PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (453)
Q Consensus 346 ---g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (453)
++.. ...+++++. ...||++|. .+. +++.-...++.++..|+-++....-.-.=..|...++.
T Consensus 175 VK~~y~~--~~f~~vv~a---~~vPVviaG--------G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~a 241 (264)
T PRK08227 175 IKTYYVE--EGFERITAG---CPVPIVIAG--------GKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKA 241 (264)
T ss_pred EecCCCH--HHHHHHHHc---CCCcEEEeC--------CCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHH
Confidence 2222 345566554 468999973 332 33333888999999999999986666666889999999
Q ss_pred HHHHHHH
Q 012928 422 MHTVALR 428 (453)
Q Consensus 422 m~~I~~~ 428 (453)
++.|+.+
T Consensus 242 l~~IVh~ 248 (264)
T PRK08227 242 VHAVVHE 248 (264)
T ss_pred HHHHHhC
Confidence 9998853
No 104
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=85.13 E-value=48 Score=34.66 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=95.2
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEE--EEeCC
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGA--MVARG 339 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgI--mIgRG 339 (453)
+|..++..| ....+.|++.|=+.| +.+.++.+.++...+ .+....+.+.+-. -.+.++..++. .|.| +++-.
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S 95 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIATS 95 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcCC
Confidence 467777555 444678999987754 466677666665544 3555666665532 12223333333 4543 33444
Q ss_pred Ccccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCcccCCCC
Q 012928 340 DLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGKF 414 (453)
Q Consensus 340 DLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETA~G~y 414 (453)
|+-.+ ...+++.......++.|+++|..+.+... ....-+...+.+++. +...|+|.+.|. +|.=..+
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~ 168 (363)
T TIGR02090 96 PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLT 168 (363)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccC
Confidence 44221 12234556667888999999998776421 233344445555544 456799999995 7888889
Q ss_pred HHHHHHHHHHHHHHH
Q 012928 415 PLKAVKVMHTVALRT 429 (453)
Q Consensus 415 P~eaV~~m~~I~~~a 429 (453)
|.+.-+.++.+..+.
T Consensus 169 P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 169 PQKMEELIKKLKENV 183 (363)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888888876543
No 105
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.06 E-value=25 Score=33.00 Aligned_cols=117 Identities=12% Similarity=0.176 Sum_probs=72.2
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhh-cCEEEEeCCCccccCCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e 348 (453)
+-++.+++.|++.|-+.. ++......++.+-.... +..|-+ -|=|.+ ++++.+.. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~~---~~~~a~~~Ga~~i~~p~~~-------- 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTPE---QADAAIAAGAQFIVSPGLD-------- 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEEEcCCCC--------
Confidence 444666889999999985 56766666666555443 343332 233333 44555555 7888754333
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
..++..|+..|.+++.- .-| .+++..+...|+|.+.+... .....+.++.++
T Consensus 87 ------~~~~~~~~~~~~~~i~g-----------v~t---~~e~~~A~~~Gad~i~~~p~---~~~g~~~~~~l~ 138 (190)
T cd00452 87 ------PEVVKAANRAGIPLLPG-----------VAT---PTEIMQALELGADIVKLFPA---EAVGPAYIKALK 138 (190)
T ss_pred ------HHHHHHHHHcCCcEECC-----------cCC---HHHHHHHHHCCCCEEEEcCC---cccCHHHHHHHH
Confidence 36888899999987641 123 34466888899999999532 222345554443
No 106
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=85.02 E-value=26 Score=33.34 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=71.0
Q ss_pred HHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~ 349 (453)
.++.+.+.|+|+|.+.-.. ..+++..+.+..... .+.+++-+-|.+ .+.++.+. .|.+.+..-|.... + ..
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~--g~~~~v~v~~~~---e~~~~~~~g~~~i~~t~~~~~~~-~-~~ 158 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELAREL--GMEVLVEVHDEE---ELERALALGAKIIGINNRDLKTF-E-VD 158 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHc--CCeEEEEECCHH---HHHHHHHcCCCEEEEeCCCcccc-C-cC
Confidence 4677778999999864321 123444333333333 334444444333 34444444 78888886665322 2 12
Q ss_pred HHHHHHHHHHHHHH--cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHH
Q 012928 350 VPLLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (453)
Q Consensus 350 v~~aqk~Ii~~c~~--aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (453)
+ ..+.+.++. .++|++.. .+.-+. .|+..+...|+|++++.+.-.....|.++++.
T Consensus 159 ~----~~~~~l~~~~~~~~pvia~---------gGI~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 159 L----NTTERLAPLIPKDVILVSE---------SGISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred H----HHHHHHHHhCCCCCEEEEE---------cCCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 2 222222333 36777653 344443 45666777799999998776666778877763
No 107
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.64 E-value=43 Score=33.00 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=90.1
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEeccccC-HHHHHHHHHHHHhcCCCceEEEEe-cChhhhccHHHHHhh-cCEEEEe--
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMVA-- 337 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSfV~s-a~dv~~v~~~L~~~~~~i~IIakI-ET~~gv~NldeI~~~-sDgImIg-- 337 (453)
.+|..++..| +...+.|++.|=+.|... ..+...++.+. +.+.+..+.+-. -+.+++ +..... .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEe
Confidence 4566676555 455678999987755433 33334444443 333445555443 233343 333333 4544432
Q ss_pred CCCcc--ccCC--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecCcccCC
Q 012928 338 RGDLG--AELP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHG 412 (453)
Q Consensus 338 RGDLg--~elg--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETA~G 412 (453)
-.|.- ..++ .++.......+++.|++.|..+.+.. ......+..++.+++.. ...|+|.+.| .+|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRF-ADTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEe-CCCCCC
Confidence 22221 1111 13344556788999999999876532 13334455566666554 4579999998 588889
Q ss_pred CCHHHHHHHHHHHHHHH
Q 012928 413 KFPLKAVKVMHTVALRT 429 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~a 429 (453)
.+|.+.-+.+..+.++.
T Consensus 165 ~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 165 LDPFTTYELIRRLRAAT 181 (259)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999888888877543
No 108
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=84.59 E-value=39 Score=32.49 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHcCCCEEEEechhhhhccCC-CCchHH-HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHH
Q 012928 361 CRSMQKPVIVATNMLESMIDHP-TPTRAE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 361 c~~aGkpvi~aTqmLeSM~~~~-~PtrAE-v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (453)
++...+|++++ ..+ ..|..+ ...+..+...|++++......-.-..|.++++.++.++
T Consensus 175 ~~~~~~pvv~~--------GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 175 VEGCPVPVVIA--------GGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HhcCCCCEEEe--------CCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 34556887653 221 234333 55678889999999998887778888999999998875
No 109
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=84.38 E-value=29 Score=31.05 Aligned_cols=120 Identities=21% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHhhhhcCCcEEEeccccCH--HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCC
Q 012928 273 IKFGVDNQVDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (453)
Q Consensus 273 I~~a~~~gvd~I~lSfV~sa--~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~ 349 (453)
.+++.+.|+|+|-++..... +...++.+.+.+.-.+..++.++.+........ +.+. .|.+.+..+.-+.......
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~~~~ 155 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGRDAV 155 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCccCc
Confidence 35667889999988865421 112222222222224678888987665443221 2222 7999988765543322111
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+.....+....+..++|++.+. +.-+ ..++..++..|+|++++.
T Consensus 156 -~~~~~~~~~~~~~~~~pi~~~G---------Gi~~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 156 -PIADLLLILAKRGSKVPVIAGG---------GIND---PEDAAEALALGADGVIVG 199 (200)
T ss_pred -hhHHHHHHHHHhcCCCCEEEEC---------CCCC---HHHHHHHHHhCCCEEEec
Confidence 1111222333455688988753 3322 245667777899999985
No 110
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=84.24 E-value=11 Score=39.33 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=84.2
Q ss_pred HhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHH----------------HhcCCCceEEEEecChhhhccHHHHHhh
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYL----------------KSCNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L----------------~~~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
+++++.+..|++.|+|.|.++ .+++..++++- ...+.......+|.+++-.+.+.+.+..
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~----~~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVD----EEDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEEC----HHHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 678888999999999998775 35555544431 1223456677899999999999998888
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
.|-+++--.|- .-+|+|. +|.+..+.++ ++.. .-+..|..-.+..+..|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW-~iIPlEn-------lIA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDW-TIIPLEN-------LIADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCC-cEecHHH-------HHhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 88887743332 1234433 3444423333 3321 233456666788999999999997552
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012928 411 HGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~ 428 (453)
| ..++-+..++.+
T Consensus 148 ----~-~ei~~~~~~~~~ 160 (344)
T PRK02290 148 ----P-NEIKAIVALIEE 160 (344)
T ss_pred ----H-HHHHHHHHHHhc
Confidence 3 344445454443
No 111
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.01 E-value=49 Score=33.16 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=55.9
Q ss_pred cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-----cCEEEEe-----CC-Ccc-------ccC----CC
Q 012928 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----RG-DLG-------AEL----PI 347 (453)
Q Consensus 290 ~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-----sDgImIg-----RG-DLg-------~el----g~ 347 (453)
.+++.+.++-+.+.+. .+++|++||- ..+++..++++. +|+|.+. +. |+. ... |.
T Consensus 140 ~~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 140 QDPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred cCHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 3445554444444432 2578999994 133344445442 6899873 11 211 111 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
...+.....+-+...+.++|+|.. ...-+ ..|+..++..|+|+||+...
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~---------GGI~s---~~da~~~l~~GAd~V~igr~ 265 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGV---------GGITS---FEDALEFLMAGASAVQVGTA 265 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEE---------CCCCC---HHHHHHHHHcCCCceeecHH
Confidence 112223344444444567888863 33333 35677888899999999744
No 112
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=83.87 E-value=2.4 Score=44.91 Aligned_cols=204 Identities=17% Similarity=0.233 Sum_probs=106.0
Q ss_pred HHHHHHHHHhCCcEEEeecCCCChHH-H--HHHHHHHH-HHHhhcCCCcEEEEeecCCCeeeecCCCCceeecCCCEEEE
Q 012928 114 REMIWKLAEEGMNVARLNMSHGDHAS-H--QKTIDLVK-EYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNF 189 (453)
Q Consensus 114 ~e~i~~Li~aGmnvaRiNfSHg~~e~-~--~~~I~~iR-~a~~~~~~~~iaIllDLkGPkIRtG~l~~~i~L~~G~~v~l 189 (453)
..+|+.|++.|..|.= +||-.... . ..-++.+- ..++.++ ++|...-|.-||+.+-- --.+++|+.+.|
T Consensus 39 lpTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~-~~V~fv~d~~g~~~~~~----i~~l~~G~ilLL 111 (389)
T PRK00073 39 LPTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLG-KEVKFVDDCIGEEAREA----IAALKDGEVLLL 111 (389)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhC-CCeEECCCCCCHHHHHH----HhcCCCCcEEEE
Confidence 4589999999998766 48755220 0 12222222 2334444 78888778878766521 135677777776
Q ss_pred EeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecCCCccCCCCCCHhh
Q 012928 190 TIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKD 269 (453)
Q Consensus 190 t~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD 269 (453)
-.-+....+.. |.+.|.+.+.+---||++|.-=... . +.-.+=|...-+|
T Consensus 112 EN~Rf~~~E~~---~d~~~a~~LA~l~DiyVNDAFg~aH-----R----------------~haS~vgi~~~lp------ 161 (389)
T PRK00073 112 ENVRFNKGEEK---NDPELAKKLASLGDVFVNDAFGTAH-----R----------------AHASTVGIAKFLK------ 161 (389)
T ss_pred eccCcCccccc---CHHHHHHHHHHhCCEEEECchhhhh-----h----------------cccchhchhhhCc------
Confidence 54433222211 3356666666554577777321000 0 0000000000000
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhccHHHHHhhcCEEEEeCC-------
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASDGAMVARG------- 339 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~II--akIET~~gv~NldeI~~~sDgImIgRG------- 339 (453)
..+ .+.-+ .+++..+.+.+...... +.|+ +|+.+.-.+ ++.++..+|.+++|-+
T Consensus 162 ---------~~~--aG~lm---ekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~ma~tFl~ 225 (389)
T PRK00073 162 ---------PAA--AGFLM---EKELEALGKALENPERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGMANTFLK 225 (389)
T ss_pred ---------hhh--hhHHH---HHHHHHHHHHhcCCCCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHHHHHHHH
Confidence 000 00000 23444555555432222 2233 477776555 6777778999999732
Q ss_pred ----CccccCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 012928 340 ----DLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 340 ----DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
+.|.++--++....-++|+..+++.|+.+++
T Consensus 226 A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~l 260 (389)
T PRK00073 226 AQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPL 260 (389)
T ss_pred HcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEEC
Confidence 3444333244555667999999999988665
No 113
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=83.79 E-value=50 Score=33.01 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=90.3
Q ss_pred cceeecCCCccCCCCCCHhhH-HHHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHH
Q 012928 250 RRHLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI 327 (453)
Q Consensus 250 ~KgVnlp~~~~~lp~ltekD~-~DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI 327 (453)
|-|...|+.. +|..++ +-++...+.|+|.|=+.+.. ++++...+ +.+.+.+....+.+. +..|.++|
T Consensus 9 RDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~-~~l~~~~~~~~v~~~-----~r~~~~di 77 (262)
T cd07948 9 REGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADC-EAIAKLGLKAKILTH-----IRCHMDDA 77 (262)
T ss_pred CCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-HHHHhCCCCCcEEEE-----ecCCHHHH
Confidence 4455555543 355565 44455678999998774433 34443333 334343433444332 23333333
Q ss_pred Hhh----cCEEE--EeCCCcccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH
Q 012928 328 ISA----SDGAM--VARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR 397 (453)
Q Consensus 328 ~~~----sDgIm--IgRGDLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (453)
-.+ .|.|- +.-.|.-.. ...++......++++.+++.|..+.+.-. +... .| ...+.+.+..+.
T Consensus 78 ~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----da~r-~~-~~~l~~~~~~~~ 151 (262)
T cd07948 78 RIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----DSFR-SD-LVDLLRVYRAVD 151 (262)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----eeCC-CC-HHHHHHHHHHHH
Confidence 322 45433 332232111 12245566678889999999988766421 1111 12 344666665544
Q ss_pred -hCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 398 -EGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 398 -~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.|+|.+.| .+|.=..+|.+.-++++.+-.+
T Consensus 152 ~~g~~~i~l-~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 152 KLGVNRVGI-ADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred HcCCCEEEE-CCcCCCCCHHHHHHHHHHHHHh
Confidence 49999888 5888889999888888887543
No 114
>PLN02591 tryptophan synthase
Probab=83.75 E-value=40 Score=33.64 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEE--EeCCCccccCCC-C
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI-E 348 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgIm--IgRGDLg~elg~-e 348 (453)
-++.+.+.|+|++.+|=. ..++..++.+.+.+.| +..|.-+=--..-+.+..|++.++|.+ |++ .|+. |. .
T Consensus 98 F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~~ 171 (250)
T PLN02591 98 FMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GARA 171 (250)
T ss_pred HHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCCc
Confidence 345667889999998844 3466666666666554 444444412222456888888876554 233 1111 21 2
Q ss_pred CHHHHHHHHHHHHHH-cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 349 DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~-aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
.++...+..++.+++ .++|+++- .+.-+. .++..+...|+|+++..+
T Consensus 172 ~~~~~~~~~i~~vk~~~~~Pv~vG---------FGI~~~---e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 172 SVSGRVESLLQELKEVTDKPVAVG---------FGISKP---EHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCchhHHHHHHHHHhcCCCceEEe---------CCCCCH---HHHHHHHhcCCCEEEECH
Confidence 445555676777776 48888874 344443 356677888999999864
No 115
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=83.62 E-value=17 Score=38.10 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=91.6
Q ss_pred hhHHHHHhhhhcCCcEEEe--ccccCHHHHHHHHHHHHhcCCCceEEEEe--cChhhhccHHHHHhhcCEEEEeCCCccc
Q 012928 268 KDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGA 343 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~l--SfV~sa~dv~~v~~~L~~~~~~i~IIakI--ET~~gv~NldeI~~~sDgImIgRGDLg~ 343 (453)
.-.+.|....+.|.|.|-+ |-.+.++.+.++++.|.+.|.+++++|=| .-..|+..++ .+|.+=|-||.++-
T Consensus 32 atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~----~v~kiRINPGNi~~ 107 (359)
T PF04551_consen 32 ATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIE----AVDKIRINPGNIVD 107 (359)
T ss_dssp HHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHH----C-SEEEE-TTTSS-
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHH----HhCeEEECCCcccc
Confidence 3345566666889998655 44456666667777788888999999988 5555654433 38999999999963
Q ss_pred cC--CCCCHHHHHHHHHHHHHHcCCCE--EEEechhhh-hccCCCCchHH-----HHHHHHHHHhCccEEEecCcccCCC
Q 012928 344 EL--PIEDVPLLQEDIIRRCRSMQKPV--IVATNMLES-MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGK 413 (453)
Q Consensus 344 el--g~e~v~~aqk~Ii~~c~~aGkpv--i~aTqmLeS-M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~ 413 (453)
++ +...+..--+.++++|+++|+|+ ++-..=|+. |...-.||..- ...+.-+-..|+|-+++| .+-.
T Consensus 108 ~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviS---lKsS 184 (359)
T PF04551_consen 108 EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVIS---LKSS 184 (359)
T ss_dssp ---SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEE---EEBS
T ss_pred cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEE---EEeC
Confidence 22 22456778899999999999995 443332322 11111233222 223344455789999988 4555
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012928 414 FPLKAVKVMHTVALRTE 430 (453)
Q Consensus 414 yP~eaV~~m~~I~~~aE 430 (453)
.+..+|+.-+.+..+..
T Consensus 185 dv~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 185 DVPETIEAYRLLAERMD 201 (359)
T ss_dssp SHHHHHHHHHHHHHH--
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 67777777777766554
No 116
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.55 E-value=9.2 Score=37.17 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=57.9
Q ss_pred cccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCC--------CccccCCCC--CHHHHHHHH
Q 012928 288 FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG--------DLGAELPIE--DVPLLQEDI 357 (453)
Q Consensus 288 fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRG--------DLg~elg~e--~v~~aqk~I 357 (453)
...++++...+.+.+.+.|-++.=| -.-|+.+++.+.++.+....++||-| +.+.+.|.. -.|..-..+
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEi-tl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEV-TLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEE-ecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 3455666555555555443322111 24566666666666655444555533 111222211 123334588
Q ss_pred HHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 358 IRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 358 i~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
++.|++++.|.+= +.-|. +++..+...|+|.+=|-
T Consensus 101 i~~a~~~~i~~iP-----------G~~Tp---tEi~~a~~~Ga~~vKlF 135 (212)
T PRK05718 101 LKAAQEGPIPLIP-----------GVSTP---SELMLGMELGLRTFKFF 135 (212)
T ss_pred HHHHHHcCCCEeC-----------CCCCH---HHHHHHHHCCCCEEEEc
Confidence 9999999999772 12232 34778999999999983
No 117
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.53 E-value=75 Score=34.89 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=98.8
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh---c--C--EE
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---S--D--GA 334 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~---s--D--gI 334 (453)
.+|..++..| +...+.|+|.|=+.| ..++.|...++.+.. ...+..+.+..-+. .+.++..+++ + + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 3577777666 444678999997766 457788877766544 34556666655322 2334443322 2 2 46
Q ss_pred EEeCCCccccC----CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecCcc
Q 012928 335 MVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGET 409 (453)
Q Consensus 335 mIgRGDLg~el----g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ET 409 (453)
+++-.|+-... ..+++.......++.|+++|..|.+..+ ...+-+...+.+++.+ ...|+|.+-| .+|
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l-~DT 171 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINI-PDT 171 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEE-ccC
Confidence 66656664322 2245666668899999999998876422 1222223335555554 4569999988 599
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 012928 410 AHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 410 A~G~yP~eaV~~m~~I~~~a 429 (453)
.=+..|.+.-++++.+....
T Consensus 172 vG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 172 VGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 99999999998888887543
No 118
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=83.39 E-value=35 Score=32.61 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=66.8
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh-----------hhhccHHHHHh----h-cCE
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-----------DSIPNLHSIIS----A-SDG 333 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~-----------~gv~NldeI~~----~-sDg 333 (453)
.++++..++.|+|.|.+... ...+...+++...+.+.+. ++.-|..+ ..-.+..++++ . +|+
T Consensus 85 ~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~-i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGER-IVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred HHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCce-EEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 55666667789999887632 2334444555555555422 22212100 01123333333 3 688
Q ss_pred EEEe-CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 334 AMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 334 ImIg-RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
+.+- +.--+..-| ..+ +.+-+.++....|++.+ .+.-+..+ +..+...|+|++|+..---.|
T Consensus 163 iii~~~~~~g~~~g-~~~----~~i~~i~~~~~ipvi~~---------GGi~~~~d---i~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 163 IIYTDISRDGTLSG-PNF----ELYKELAAATGIPVIAS---------GGVSSLDD---IKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred EEEEeecCCCccCC-CCH----HHHHHHHHhcCCCEEEe---------cCCCCHHH---HHHHHHCCCCEEEEeHHHHcC
Confidence 7774 211122223 221 22222344558998874 44555444 445555699999997666667
Q ss_pred CCHHH
Q 012928 413 KFPLK 417 (453)
Q Consensus 413 ~yP~e 417 (453)
+++.+
T Consensus 226 ~~~~~ 230 (234)
T cd04732 226 KITLE 230 (234)
T ss_pred CCCHH
Confidence 66543
No 119
>PRK14057 epimerase; Provisional
Probab=83.24 E-value=53 Score=32.96 Aligned_cols=144 Identities=10% Similarity=0.092 Sum_probs=88.9
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCC---------CceEEEEecChhhhccHHHHHhhcCEEEEeCCCc
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA---------DIHVIVKIESADSIPNLHSIISASDGAMVARGDL 341 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~---------~i~IIakIET~~gv~NldeI~~~sDgImIgRGDL 341 (453)
..|+.-.+.|+|+|.+. ++...++...-+++++.|. ...|..+-+| -++.++.++...|.|++ +
T Consensus 89 ~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv----M 161 (254)
T PRK14057 89 TAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL----L 161 (254)
T ss_pred HHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----E
Confidence 34444567899998876 4666667666677877774 3667777787 46778999999998888 4
Q ss_pred cccCCCC---CHHHHHHHHHHH---HHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCH
Q 012928 342 GAELPIE---DVPLLQEDIIRR---CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (453)
Q Consensus 342 g~elg~e---~v~~aqk~Ii~~---c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (453)
+++-|+. -.+..-++|.+. -.+.|..+.+. +. +.-+.. -+...+..|+|.+++.+---...-+
T Consensus 162 tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VD-GGI~~~---ti~~l~~aGad~~V~GSalF~~~d~ 230 (254)
T PRK14057 162 AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------ID-GSLTQD---QLPSLIAQGIDRVVSGSALFRDDRL 230 (254)
T ss_pred EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EE-CCCCHH---HHHHHHHCCCCEEEEChHhhCCCCH
Confidence 5555541 233333333332 22445443331 12 222222 2456788999998886332223468
Q ss_pred HHHHHHHHHHHHHHhcC
Q 012928 416 LKAVKVMHTVALRTESS 432 (453)
Q Consensus 416 ~eaV~~m~~I~~~aE~~ 432 (453)
.++++.|+++...|-.+
T Consensus 231 ~~~i~~l~~~~~~~~~~ 247 (254)
T PRK14057 231 VENTRSWRAMFKVAGDT 247 (254)
T ss_pred HHHHHHHHHHHhhcCCc
Confidence 89999998887666543
No 120
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=82.65 E-value=16 Score=40.78 Aligned_cols=157 Identities=13% Similarity=0.145 Sum_probs=100.0
Q ss_pred HhhHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEEEec--ChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 267 DKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIakIE--T~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
+.-.+.|....+.|+|.|-+. -.+.|+.+..+++.+.+.|-+++++|-|- -..|+..+ +.+|.|=|-||.++
T Consensus 41 ~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~----~~v~kiRINPGN~~ 116 (611)
T PRK02048 41 EACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAA----QYAEKVRINPGNYV 116 (611)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHH----HhhCCEEECCCcCC
Confidence 344555666678899997654 44555556666777777788999999873 33343322 23899999999997
Q ss_pred cc---C------------CCCCHHHHHHHHHHHHHHcCCCEEEEec--hhhhhc-cCCCCchHH-----HHHHHHHHHhC
Q 012928 343 AE---L------------PIEDVPLLQEDIIRRCRSMQKPVIVATN--MLESMI-DHPTPTRAE-----VSDIAIAVREG 399 (453)
Q Consensus 343 ~e---l------------g~e~v~~aqk~Ii~~c~~aGkpvi~aTq--mLeSM~-~~~~PtrAE-----v~Dv~nav~~G 399 (453)
-. + .++++..--+.++++|+++|+|+=+-++ =|+.=+ ..-.+|..- +.-+--+-..|
T Consensus 117 ~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~ 196 (611)
T PRK02048 117 DPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEH 196 (611)
T ss_pred CccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCC
Confidence 63 1 1234556668899999999999765543 121110 111123222 23334455689
Q ss_pred ccEEEecCcccCCCCHHHHHHHHHHHHH
Q 012928 400 ADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (453)
++=+.+|-=.+.-..++++.+.|..-..
T Consensus 197 f~diviS~KsS~~~~~V~AyRlLa~~l~ 224 (611)
T PRK02048 197 FTDVVISIKASNTVVMVRTVRLLVAVME 224 (611)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999777777777777766666553
No 121
>PRK15452 putative protease; Provisional
Probab=82.54 E-value=11 Score=40.53 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=54.7
Q ss_pred hhHHHHHhhhhcCCcEEEeccc----------cCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHH----hh-c
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSII----SA-S 331 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV----------~sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~----~~-s 331 (453)
.+.+.++.|++.|+|.|-+..- =+.+++.++.++..+.|..+.+..- |=..+-++.+.+.+ .. .
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 4678889999999999988321 1347787777777776665444321 22222333333333 33 7
Q ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc--CCCEEEEech
Q 012928 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--QKPVIVATNM 374 (453)
Q Consensus 332 DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a--Gkpvi~aTqm 374 (453)
|||+++ |+|+ +..+++. +.++...||+
T Consensus 91 DgvIV~--d~G~--------------l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 91 DALIMS--DPGL--------------IMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecc
Confidence 999995 3331 2223332 6788888874
No 122
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=82.48 E-value=17 Score=33.98 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=64.5
Q ss_pred CHhhHHHHHhhhhcCCcEEEe--ccccCHHHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhh-cCEEEEeCCC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARGD 340 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~l--SfV~sa~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~-sDgImIgRGD 340 (453)
+..+..++..++..++++|=+ +|... .....++.+ .+...+..+++ |+.+.. -.-+++..++ +|++.+=
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~-~g~~~i~~i-~~~~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h--- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKS-EGMEAVRAL-REAFPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL--- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHH-hCHHHHHHH-HHHCCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE---
Confidence 444555554444445888766 55422 122233322 22223556665 666652 1123555554 7888872
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.+..+...+++++.|+++|++++++. -...|.. +...+...|+|.+.+.
T Consensus 85 ------~~~~~~~~~~~i~~~~~~g~~~~v~~--------~~~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 ------GAAPLSTIKKAVKAAKKYGKEVQVDL--------IGVEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred ------eeCCHHHHHHHHHHHHHcCCeEEEEE--------eCCCCHH---HHHHHHHCCCCEEEEc
Confidence 11123445788999999999988630 0112322 3445777899999884
No 123
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=82.36 E-value=23 Score=34.47 Aligned_cols=151 Identities=16% Similarity=0.162 Sum_probs=88.6
Q ss_pred CCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc-CEEEEeCC
Q 012928 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS-DGAMVARG 339 (453)
Q Consensus 262 lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s-DgImIgRG 339 (453)
-|..|+.|.+.+ +.+.++++..|+++ +..+..+++.|. +.++++.+-|==|.|-...+.-+... +++-.|-.
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAd 85 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGAD 85 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 477888888665 77889999988874 778888888884 45788888886666665544433321 11111111
Q ss_pred --CccccCCC------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHH-HHHHHhCccEEEecCccc
Q 012928 340 --DLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGADAVMLSGETA 410 (453)
Q Consensus 340 --DLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv-~nav~~G~D~vmLs~ETA 410 (453)
|+.+.+|. ..+..-.+++.+.|. |+|+-+ +|| .+.-+..|+... --++..|+|.+=-|.-=+
T Consensus 86 EiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE----~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 86 EVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIE----TGLLTDEEIRKACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred EEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEe----cCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 22223332 233444455555553 788655 333 222344554443 345678999987652211
Q ss_pred CCCCHHHHHHHHHHHHH
Q 012928 411 HGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 411 ~G~yP~eaV~~m~~I~~ 427 (453)
.|.=-++.|+.|++++.
T Consensus 157 ~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 157 AGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 11223588889988875
No 124
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.97 E-value=57 Score=32.71 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=75.0
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCC-CCH
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDV 350 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~-e~v 350 (453)
-++.+.+.|+|+|.+|-. ..++..++.+.+.+.|-..-.+..=.| -.+.+..|++.++|.+--=.-.| -.|. ..+
T Consensus 111 F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~G-vTG~~~~~ 186 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTG-VTGLKTEL 186 (263)
T ss_pred HHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCC-CCCCCccc
Confidence 456667889999999875 457777788888777654333333334 46779999999985554211111 1122 245
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 351 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 351 ~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
+.-.+..++..+++ ++|+.+- -+.-+. .++..+...|+|+++..+
T Consensus 187 ~~~~~~~i~~ir~~t~~Pi~vG---------FGI~~~---e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 187 DKKLKKLIETIKKMTNKPIILG---------FGISTS---EQIKQIKGWNINGIVIGS 232 (263)
T ss_pred cHHHHHHHHHHHHhcCCCEEEE---------CCcCCH---HHHHHHHhcCCCEEEECH
Confidence 55556666666654 7887763 334443 345567778999998753
No 125
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.92 E-value=46 Score=31.25 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=75.1
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh-hhhccHHHHHh-hcCEEEEeCCCccccCCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-DSIPNLHSIIS-ASDGAMVARGDLGAELPIED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~-~gv~NldeI~~-~sDgImIgRGDLg~elg~e~ 349 (453)
.++.+.+.|+|+|.+++......+.++.++..+.| +++++-+-++ +-++.+..... -+|.+-+.+|-=+...+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 56667789999999887655555666777776654 5565544232 12233333444 37888876642222222222
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHH
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (453)
+. .+-+..+....+.+.+ ..+. +. ..+..+...|+|++.+.+.--.-+-|.++++.++++
T Consensus 146 ~~----~i~~l~~~~~~~~i~v--------~GGI-~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 FE----DLQTILKLVKEARVAV--------AGGI-NL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHHhcCCCcEEE--------ECCc-CH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 21 1212222222343432 2222 33 234467789999999865533345688888888765
No 126
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.89 E-value=3.1 Score=43.51 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHH
Q 012928 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (453)
Q Consensus 99 r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a 150 (453)
.+-.+-+.+||..++.+..+.|+++|+|++=|.-+||..+...+.++.+|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 3566888899998999999999999999999999999998877777777653
No 127
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=81.77 E-value=52 Score=34.97 Aligned_cols=138 Identities=15% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~ 349 (453)
+++.+.+.|+|+|.++--.+...+.++.++..+.|.. ++. .+-....++.+.++.+. +|.|.+++|--+...+..
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~--~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~- 149 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVR--LMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD- 149 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCE--EEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC-
Confidence 6777889999999865322323455566666665443 333 12212234445555555 899988875432222221
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.....+++. ...+.|+++. .+. +. ..+..++..|+|++.+.+.-..-.-|.++++.+++.+.+
T Consensus 150 ~~~~l~~l~---~~~~iPI~a~---------GGI-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 150 PLELLKEVS---EEVSIPIAVA---------GGL-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred hHHHHHHHH---hhCCCcEEEE---------CCC-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 112222222 2346887664 222 32 335677889999999876655556788999888877643
No 128
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.72 E-value=26 Score=33.54 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=64.7
Q ss_pred HHHHHhhhhcCCcEEEec--cccCHH--HHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccc-
Q 012928 270 WEDIKFGVDNQVDFYAVS--FVKDAK--VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA- 343 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lS--fV~sa~--dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~- 343 (453)
.+.++.+.+.|+|+|.+- ..+.+. .+.++.+.+.+.+ ++.+++.+.|++-... ..+. .|.+.+...++..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~---a~~~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALN---AAKLGFDIIGTTLSGYTEE 157 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHH---HHHcCCCEEEccCcccccc
Confidence 456777888999987662 222222 5555666666656 6778887666543211 1122 6877654322211
Q ss_pred --cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 344 --ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 344 --elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
......+ ...+++. ...+.|++.. .+.-+ ..|+..++..|+|++++.
T Consensus 158 ~~~~~~~~~-~~l~~i~---~~~~ipvia~---------GGI~~---~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 158 TAKTEDPDF-ELLKELR---KALGIPVIAE---------GRINS---PEQAAKALELGADAVVVG 206 (219)
T ss_pred ccCCCCCCH-HHHHHHH---HhcCCCEEEe---------CCCCC---HHHHHHHHHCCCCEEEEc
Confidence 1111111 2223332 2337898874 33333 356778888999999986
No 129
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.68 E-value=38 Score=33.92 Aligned_cols=71 Identities=32% Similarity=0.337 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHH
Q 012928 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (453)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (453)
.|+.. +...+.|.+. .+.|||+ ..+.-| -+|++.++..|+|+|++.+--+.++.|..-.+.+..
T Consensus 159 ~Gi~~-~~~I~~I~e~---~~vpVI~---------egGI~t---peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 159 QGLLN-PYNLRIIIER---ADVPVIV---------DAGIGT---PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred CCCCC-HHHHHHHHHh---CCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 45544 4444544433 5789887 345555 457889999999999999988899999998888888
Q ss_pred HHHHHhc
Q 012928 425 VALRTES 431 (453)
Q Consensus 425 I~~~aE~ 431 (453)
-+..-..
T Consensus 223 Av~aGr~ 229 (248)
T cd04728 223 AVEAGRL 229 (248)
T ss_pred HHHHHHH
Confidence 7765543
No 130
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=81.16 E-value=50 Score=34.45 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=90.6
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEe-cChhhhccHHHHHhh-cCE--EEEe
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDG--AMVA 337 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakI-ET~~gv~NldeI~~~-sDg--ImIg 337 (453)
.+|..++..| +...+.|++.|=+.|.. +..+.+.++.+ .+.+....+.+-. -+.+. ++..++. .|. +++.
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~~~~~i~~~~r~~~~d---i~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALGLPARLMAWCRARDAD---IEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcCCCcEEEEEcCCCHHH---HHHHHcCCcCEEEEEEc
Confidence 3567777555 44567899999776543 33344444444 3334445555544 22333 3333332 453 4444
Q ss_pred CCCcccc--CC--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCcccCC
Q 012928 338 RGDLGAE--LP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHG 412 (453)
Q Consensus 338 RGDLg~e--lg--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETA~G 412 (453)
-.|+-.. ++ .++........++.++++|..+-+.. ....+-+...+.+++. +...|+|.+.| .+|.=.
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l-~DT~G~ 167 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRF-ADTVGI 167 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEE-cccCCC
Confidence 4443222 11 23444445678899999998876642 2333334444555544 34579999988 588889
Q ss_pred CCHHHHHHHHHHHHHHH
Q 012928 413 KFPLKAVKVMHTVALRT 429 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~a 429 (453)
..|.+.-++++.+..+.
T Consensus 168 ~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 168 LDPFSTYELVRALRQAV 184 (365)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999988887654
No 131
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=81.15 E-value=19 Score=36.97 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=64.8
Q ss_pred hHHHHHhhhhcCCcEEEeccccC-HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~s-a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg 346 (453)
..+.+...++.++++|..+|-.- .+.+..+ .+ ..+.++.++-|.+... .+++. +|+|++--.+=|-+.|
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l----~~--~gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERL----HA--AGIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHH----HH--TT-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHH----HH--cCCccccccCCHHHHH---HhhhcCCCEEEEeccccCCCCC
Confidence 44667777888999999998765 3333333 32 3588999888776553 33333 8998876555555555
Q ss_pred C--CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 347 I--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 347 ~--e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
. +.+..+..++.. ...+|||.|- +.-+ -.+++.++..|+|+|.+
T Consensus 173 ~~~~~~~~L~~~v~~---~~~iPViaAG---------GI~d---g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRD---AVDIPVIAAG---------GIAD---GRGIAAALALGADGVQM 218 (330)
T ss_dssp -SSG-HHHHHHHHHH---H-SS-EEEES---------S--S---HHHHHHHHHCT-SEEEE
T ss_pred ccccceeeHHHHHhh---hcCCcEEEec---------CcCC---HHHHHHHHHcCCCEeec
Confidence 2 124444444433 3449999873 3333 45678899999999986
No 132
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=81.00 E-value=26 Score=32.84 Aligned_cols=131 Identities=13% Similarity=0.068 Sum_probs=70.9
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccC-C
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL-P 346 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~el-g 346 (453)
+++.+.+.|+|+|-++.-. .....++... +....+-+.+- +.+|+..+ +|.|.+++-.=+..= +
T Consensus 73 ~~~~a~~~gad~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD--LPVADARALL---GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 3456678899998776421 1223333322 22333333332 34444332 799998754322211 0
Q ss_pred CC-CH-HHHHHHHHHHHHHcC-CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 347 IE-DV-PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 347 ~e-~v-~~aqk~Ii~~c~~aG-kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
.. .. ....+++. .... .|++.. .+. +. .++..+...|+|++.+.+.-..-.-|.++++.+.
T Consensus 142 ~~~~~g~~~~~~~~---~~~~~~~v~a~---------GGI-~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~ 205 (212)
T PRK00043 142 AKAPQGLEGLREIR---AAVGDIPIVAI---------GGI-TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALL 205 (212)
T ss_pred CCCCCCHHHHHHHH---HhcCCCCEEEE---------CCc-CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHH
Confidence 00 11 12222332 2223 787764 222 32 4567788899999998655444567999999998
Q ss_pred HHHHHH
Q 012928 424 TVALRT 429 (453)
Q Consensus 424 ~I~~~a 429 (453)
+++.++
T Consensus 206 ~~~~~~ 211 (212)
T PRK00043 206 AAFRAA 211 (212)
T ss_pred HHHhhc
Confidence 877654
No 133
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=80.86 E-value=53 Score=35.90 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCHhhHHHHH-hhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEec-ChhhhccHHHHHhh-----cC--EE
Q 012928 265 ITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSIPNLHSIISA-----SD--GA 334 (453)
Q Consensus 265 ltekD~~DI~-~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIE-T~~gv~NldeI~~~-----sD--gI 334 (453)
+|..++..|. ...+.|+|.|=+.| +.+..|...++.+... .....+.+-.- ..+.+ +.-++. .+ .+
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~~~~di---d~a~~al~~~~~~~v~i 95 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARCVEKDI---DAAAEALKPAEKFRIHT 95 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCHHhH---HHHHHhccccCCCEEEE
Confidence 5777876664 44578999997765 4567888877665533 34455555543 23333 322222 23 34
Q ss_pred EEeCCCccccC--C--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH---HHHHHH-HHHhCccEEEec
Q 012928 335 MVARGDLGAEL--P--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAI-AVREGADAVMLS 406 (453)
Q Consensus 335 mIgRGDLg~el--g--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE---v~Dv~n-av~~G~D~vmLs 406 (453)
++.-.|+-..- + .+++.......++.|+++|..+.+. ....+|++ +.+++. +...|+|.+.|
T Consensus 96 ~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~---------~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l- 165 (494)
T TIGR00973 96 FIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS---------CEDAGRTEIPFLARIVEAAINAGATTINI- 165 (494)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---------cCCCCCCCHHHHHHHHHHHHHcCCCEEEe-
Confidence 55544554332 2 2456666778999999999987774 22444444 444444 45569999999
Q ss_pred CcccCCCCHHHHHHHHHHHHHHH
Q 012928 407 GETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+|.=+..|.+.-++++.+.+..
T Consensus 166 ~DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 166 PDTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhh
Confidence 59999999999988888887654
No 134
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.65 E-value=18 Score=37.82 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=77.6
Q ss_pred hhHHHHHhhhhcCCcEEEeccc----------cCHHHHHHHHHHHHhcCCCceEEEEe-cChhh----hccHHHHHhh-c
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNADIHVIVKI-ESADS----IPNLHSIISA-S 331 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV----------~sa~dv~~v~~~L~~~~~~i~IIakI-ET~~g----v~NldeI~~~-s 331 (453)
.++++++.+++.|+|.|-+.+- -+-+++.+..++..+.|....+...+ =.... .+-++...+. .
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 4678899999999998877733 35577888888888888765544322 11111 2334444444 7
Q ss_pred CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcC--CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 332 DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aG--kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
|+++++ |++ ++..+++.+ .|+.+.||+-= .| ...+--+-..|+.-++|+.|.
T Consensus 94 Daviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v---~N-------~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV---TN-------AETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec---CC-------HHHHHHHHHcCCEEEEeCccC
Confidence 999994 543 466788888 99999988321 11 122335566799999999885
Q ss_pred c
Q 012928 410 A 410 (453)
Q Consensus 410 A 410 (453)
+
T Consensus 148 s 148 (347)
T COG0826 148 S 148 (347)
T ss_pred C
Confidence 4
No 135
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.11 E-value=7.3 Score=37.63 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC
Q 012928 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 351 ~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (453)
|.....+++.|+++|+|++= +.-| .+++..+...|+|.+=+--....
T Consensus 83 P~~~~~vi~~a~~~~i~~iP-----------G~~T---ptEi~~A~~~Ga~~vK~FPa~~~ 129 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLP-----------GAAT---PSEVMALREEGYTVLKFFPAEQA 129 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeC-----------CCCC---HHHHHHHHHCCCCEEEECCchhh
Confidence 34567899999999999773 2223 45588999999999998644444
No 136
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=79.95 E-value=26 Score=33.57 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=65.0
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC-CCceEEEE-----ecChh----hhccHHHHHh----h-cC
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVK-----IESAD----SIPNLHSIIS----A-SD 332 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~-~~i~IIak-----IET~~----gv~NldeI~~----~-sD 332 (453)
.+.+|++.+.+.|+|.|.++- ....+...+.++..+.+ +.+.+-.. +++.. .-.+..++++ . +|
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs-~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~ 160 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGT-AAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE 160 (230)
T ss_pred CCHHHHHHHHHcCCCEEEECh-HHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC
Confidence 356778888889999887752 11223334455555555 23322111 22110 0122233332 2 68
Q ss_pred EEEEeCCCcccc---CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 333 GAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 333 gImIgRGDLg~e---lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
.+++. |+..+ .|. .+ ...+++ ++....|++.+ .+.-+.+ |+..+...|+|++|+..--
T Consensus 161 ~ii~~--~~~~~g~~~g~-~~-~~i~~i---~~~~~ipvia~---------GGi~~~~---di~~~~~~Gadgv~ig~a~ 221 (230)
T TIGR00007 161 GIIYT--DISRDGTLSGP-NF-ELTKEL---VKAVNVPVIAS---------GGVSSID---DLIALKKLGVYGVIVGKAL 221 (230)
T ss_pred EEEEE--eecCCCCcCCC-CH-HHHHHH---HHhCCCCEEEe---------CCCCCHH---HHHHHHHCCCCEEEEeHHH
Confidence 77763 33222 232 22 222233 33467898874 4555544 4555666899999996443
Q ss_pred cCCCCH
Q 012928 410 AHGKFP 415 (453)
Q Consensus 410 A~G~yP 415 (453)
-.|.+|
T Consensus 222 ~~~~~~ 227 (230)
T TIGR00007 222 YEGKIT 227 (230)
T ss_pred HcCCCC
Confidence 345544
No 137
>PRK08005 epimerase; Validated
Probab=79.92 E-value=47 Score=32.29 Aligned_cols=134 Identities=8% Similarity=0.026 Sum_probs=83.6
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCC--
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-- 347 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~-- 347 (453)
...|+...+.|+|.|.+.+ ++..++..+-+++++.|....|..+-+|+ ++.++.++...|.|++ ++++=|+
T Consensus 71 ~~~i~~~~~~gad~It~H~-Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~Vlv----MsV~PGf~G 143 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHA-ESVQNPSEILADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMI----MTSEPDGRG 143 (210)
T ss_pred HHHHHHHHHhCCCEEEEcc-cCccCHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEE----EEecCCCcc
Confidence 3455555688999998764 65667777778888889888888888885 6668888889998888 4555554
Q ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHH
Q 012928 348 -EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (453)
Q Consensus 348 -e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (453)
.-++...++|-+..+.....-|.. . +.-+. .-+...+..|+|.+++.+---..+-|.++++.|
T Consensus 144 Q~f~~~~~~KI~~l~~~~~~~~I~V--------D-GGI~~---~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 144 QQFIAAMCEKVSQSREHFPAAECWA--------D-GGITL---RAARLLAAAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred ceecHHHHHHHHHHHHhcccCCEEE--------E-CCCCH---HHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 224444555544332222111221 2 22222 224467888999988863322234466776655
No 138
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=79.82 E-value=12 Score=35.99 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=72.7
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCC----
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI---- 347 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~---- 347 (453)
-|+...+.|+|+|.+. +++.+++.++-+++++.|....|..+-+| .++.+++++...|.|++ ++++-|.
T Consensus 72 ~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq~ 144 (201)
T PF00834_consen 72 YIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQK 144 (201)
T ss_dssp HHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB-
T ss_pred HHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCccc
Confidence 4444567899998876 47778888888999998888888878787 56778899999999888 4555554
Q ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCC-CCchHHHHHHHHHHHhCccEEEec
Q 012928 348 --EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 348 --e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~-~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+.+..-.+++-+...+.|..+.+. +..+ .... +...+..|+|.+++.
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~~-----~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEEN-----IKQLVEAGADIFVAG 194 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTTT-----HHHHHHHT--EEEES
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHHH-----HHHHHHcCCCEEEEC
Confidence 233333344444555555554442 1221 2222 336677899988774
No 139
>PRK00208 thiG thiazole synthase; Reviewed
Probab=79.62 E-value=48 Score=33.21 Aligned_cols=71 Identities=31% Similarity=0.316 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHH
Q 012928 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (453)
Q Consensus 345 lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (453)
.|+.. +...+.+.+. .+.|||+ ..+.-| -+|++.++..|+|+|++.+--+.++.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIv---------eaGI~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIV---------DAGIGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34434 4444444443 4789987 345555 457889999999999999998899999998888888
Q ss_pred HHHHHhc
Q 012928 425 VALRTES 431 (453)
Q Consensus 425 I~~~aE~ 431 (453)
-+..-..
T Consensus 223 Av~aGr~ 229 (250)
T PRK00208 223 AVEAGRL 229 (250)
T ss_pred HHHHHHH
Confidence 7765543
No 140
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=79.57 E-value=27 Score=38.53 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=122.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHH-HHHHHHHHHhhcCCCcEEEEeecCCCeeee
Q 012928 94 GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQK-TIDLVKEYNSQFEDKAVAIMLDTKGPEVRS 172 (453)
Q Consensus 94 ~~~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~-~I~~iR~a~~~~~~~~iaIllDLkGPkIRt 172 (453)
..-..|+++| +||+ .+..++..-+.+++.++-..|--..-..|.+ .++--+....-..
T Consensus 90 ~dl~~Rg~eI---tgp~-~d~~~i~naln~~a~~~m~DfEDS~ap~w~~~~v~g~~N~~~~~~----------------- 148 (545)
T COG2225 90 TDLIDRGVEI---TGPA-VDRKMVINALNEGAKTTMMDFEDSVAPVWAKDKVLGQRNLLGLMR----------------- 148 (545)
T ss_pred chhhcCCcee---eecc-ccHHHHHHHhccccceEeeccccccccccccchhhhhhhHHHHhc-----------------
Confidence 3345799999 5786 4678999999999999999998754444444 4433333221111
Q ss_pred cCCCCceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccce
Q 012928 173 GDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (453)
Q Consensus 173 G~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~Kg 252 (453)
|++..+ .-+.|..+++..+.. + .=...|.+-|.+-..+.
T Consensus 149 G~l~~~-~~k~GK~y~~~~n~d----------------------r------------------~~~L~vR~~G~hm~e~~ 187 (545)
T COG2225 149 GELSAA-NQKAGKQYKLKLNPD----------------------R------------------RSLLFVRNRGLHMTEPH 187 (545)
T ss_pred cccccc-cccccceeecccCcc----------------------c------------------cceeEEeccccccccce
Confidence 222111 124566655543211 0 11122344455555555
Q ss_pred eecCCCccCCCCCCHhhHHHHHhhh----hcCCcEEEeccccCHHHHHHHHHHHHhc----C---CCceEEEEecChhhh
Q 012928 253 LNVRGKSANLPSITDKDWEDIKFGV----DNQVDFYAVSFVKDAKVVHELKDYLKSC----N---ADIHVIVKIESADSI 321 (453)
Q Consensus 253 Vnlp~~~~~lp~ltekD~~DI~~a~----~~gvd~I~lSfV~sa~dv~~v~~~L~~~----~---~~i~IIakIET~~gv 321 (453)
|.+-|..++- .+.+..+--+..+- .-|-=|+.+|+.++++++.-.-+.+... | ..+++-.+|||..+.
T Consensus 188 i~~DG~~vp~-~i~d~~l~~~~n~~~l~~rg~g~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~ 266 (545)
T COG2225 188 ITVDGEEVPE-GIFDFVLYGLHNAHDLLARGGGPYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRAT 266 (545)
T ss_pred EEecCccCcH-HHHHHHHHHHHhhhhhhhccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhh
Confidence 5444443210 01111111111111 2233578899999999998766555432 2 457888899999999
Q ss_pred ccHHHHHhhc----CEEEEeCCCcccc--------CCC----------CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 322 PNLHSIISAS----DGAMVARGDLGAE--------LPI----------EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 322 ~NldeI~~~s----DgImIgRGDLg~e--------lg~----------e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
-|+++|+... -|+=-||=|..-+ -++ +-+...++..+..|+++|.+.+--
T Consensus 267 ~~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Gg 338 (545)
T COG2225 267 LNLDEILYALRDRVVGLNTGRWDYIGSEIKTLMEDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGG 338 (545)
T ss_pred hhHHHHHHHHHhhhccccccchhhhhhHHHHhhhhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCccccc
Confidence 9999999862 2444455453221 112 235567799999999999965433
No 141
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=79.47 E-value=60 Score=32.03 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=67.5
Q ss_pred CHhhHHHHHhhhhcCCcEEEecc----------------ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSF----------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSf----------------V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~ 329 (453)
|..+...+...+..++|+|=+.+ .++++.+.++-+.+.+ .+++|.+||=--.--.+..++++
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~a~ 155 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELIDAL 155 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHHHH
Confidence 45555555444566788876642 2355555554444543 36789999854221122334443
Q ss_pred h-----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc-C-CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccE
Q 012928 330 A-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-Q-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 402 (453)
Q Consensus 330 ~-----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a-G-kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~ 402 (453)
. +|+|-|-.+.- | -+.+.-+.++..+++ + +|+|- ++..-+ ..|+..++..|+|+
T Consensus 156 ~l~~aGad~i~Vd~~~~----g---~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s---~eda~e~l~~GAd~ 216 (231)
T TIGR00736 156 NLVDDGFDGIHVDAMYP----G---KPYADMDLLKILSEEFNDKIIIG---------NNSIDD---IESAKEMLKAGADF 216 (231)
T ss_pred HHHHcCCCEEEEeeCCC----C---CchhhHHHHHHHHHhcCCCcEEE---------ECCcCC---HHHHHHHHHhCCCe
Confidence 2 78998842111 1 122344445555554 3 77665 455555 34566777789999
Q ss_pred EEecC
Q 012928 403 VMLSG 407 (453)
Q Consensus 403 vmLs~ 407 (453)
||+..
T Consensus 217 VmvgR 221 (231)
T TIGR00736 217 VSVAR 221 (231)
T ss_pred EEEcH
Confidence 99964
No 142
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=79.25 E-value=88 Score=32.88 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCE--EEEeC
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDG--AMVAR 338 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDg--ImIgR 338 (453)
.+|.+++..| ....+.|+|.|=+.|.. +..+.+.++.+. +.+....+++-.-. -.+.++..++. .|. +++.-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 3466676555 44467899998776543 334444444443 34555555555322 12334444433 453 44444
Q ss_pred CCcccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecCcccCCC
Q 012928 339 GDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGK 413 (453)
Q Consensus 339 GDLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETA~G~ 413 (453)
.|+-.. ...++........++.|++.|..|.+.. .....-+...+.+++.. ...|+|.+.|. +|.=..
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~ 171 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGIL 171 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCC
Confidence 443211 1224455666788899999999877642 13334444555565544 45799999995 898889
Q ss_pred CHHHHHHHHHHHHHHH
Q 012928 414 FPLKAVKVMHTVALRT 429 (453)
Q Consensus 414 yP~eaV~~m~~I~~~a 429 (453)
.|.+.-++++.+....
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999998888887654
No 143
>PRK07695 transcriptional regulator TenI; Provisional
Probab=78.90 E-value=46 Score=31.36 Aligned_cols=129 Identities=11% Similarity=0.064 Sum_probs=71.7
Q ss_pred hhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccC-CCCCHHH
Q 012928 275 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAEL-PIEDVPL 352 (453)
Q Consensus 275 ~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~el-g~e~v~~ 352 (453)
.+...++|+|-++.- ...+..+++.+ .+..|.+.+.|.+- +.+..+. +|.+++|+-.-+..- +....
T Consensus 68 la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~-- 136 (201)
T PRK07695 68 IALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPAR-- 136 (201)
T ss_pred HHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCC--
Confidence 455677888777642 12233444432 24445554444332 2222222 799998874433211 11100
Q ss_pred HHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHH
Q 012928 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (453)
--+.+-+.+....+|++.. .+. +. .++..+...|+|++.+.+.--....|.++++.+.++..
T Consensus 137 g~~~l~~~~~~~~ipvia~---------GGI-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 GLEELSDIARALSIPVIAI---------GGI-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred CHHHHHHHHHhCCCCEEEE---------cCC-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 0122222233457998874 333 33 34556678999999888776666789999998888764
No 144
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=78.78 E-value=13 Score=38.99 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=82.4
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHH-------------------------HHhcCCCceEEEEecChhhhccH
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY-------------------------LKSCNADIHVIVKIESADSIPNL 324 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~-------------------------L~~~~~~i~IIakIET~~gv~Nl 324 (453)
++.+..|++.|+|.|.++- +++..++++ +...+..+.....|.+++-++.+
T Consensus 15 k~~vt~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHHHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHH
Confidence 6778899999999987763 333333322 12224456678899999999998
Q ss_pred HHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE
Q 012928 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (453)
Q Consensus 325 deI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (453)
.+.+...|-+++--.|-. -+|+|. ++.+....+..++.. ..+-.|..-.+..++.|+|+|+
T Consensus 91 ~~~~~~~~~~iv~~~Dw~-iIPlEn-------liA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVl 151 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWT-IIPLEN-------LIAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVL 151 (354)
T ss_pred HHHhccCCeEEEEcCCCc-EecHHH-------HHHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEE
Confidence 888887887777544443 234443 333333344444432 2445566667889999999999
Q ss_pred ecCcccCCCCHHHHHHHHHHHHHH
Q 012928 405 LSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
|..+ -| ..|+-+...+.+
T Consensus 152 l~~~-----d~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 152 LDPD-----DP-AEIKALVALLKE 169 (354)
T ss_pred ECCC-----CH-HHHHHHHHHHhh
Confidence 9755 23 445555555554
No 145
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=78.45 E-value=42 Score=33.12 Aligned_cols=146 Identities=13% Similarity=0.121 Sum_probs=81.8
Q ss_pred CCCCHhhHH-HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecC--hhh--------hccHHHHHhh-
Q 012928 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIES--ADS--------IPNLHSIISA- 330 (453)
Q Consensus 263 p~ltekD~~-DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET--~~g--------v~NldeI~~~- 330 (453)
|.-+..|.+ -+..+.+.++|.|+++. ..+....+. .+.+++++..|++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 455666764 44778889999999873 233322222 3456778889843 221 1335666655
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhh-ccCCCCchHHHHH-HHHHHHhCccEEEecCc
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAEVSD-IAIAVREGADAVMLSGE 408 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM-~~~~~PtrAEv~D-v~nav~~G~D~vmLs~E 408 (453)
+|++.+--. .+- .+-.+.....+++.+.|+++|.|+++- ++-. .+-+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~-- 176 (258)
T TIGR01949 104 ADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP-- 176 (258)
T ss_pred CCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc--
Confidence 676655322 111 121234456788999999999998872 1100 0011112233444 355667999999975
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 012928 409 TAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~ 428 (453)
|+ --++.|++++..
T Consensus 177 -----~~-~~~~~l~~~~~~ 190 (258)
T TIGR01949 177 -----YT-GDIDSFRDVVKG 190 (258)
T ss_pred -----CC-CCHHHHHHHHHh
Confidence 22 135556666543
No 146
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=77.54 E-value=51 Score=31.08 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=72.7
Q ss_pred HHHHhhhhcCCcEEEe-----ccccC----HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAV-----SFVKD----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~l-----SfV~s----a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGD 340 (453)
+.++.+.+.|+|+|.+ +|+.+ .+.++++++.+ .....+-.++-. ..+.++.+.++ +|++.+=-
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~-- 92 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHV-- 92 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEee--
Confidence 5667788999999999 88744 33444444322 212223344443 33345555554 79977631
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC--c-ccCCCCHHH
Q 012928 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--E-TAHGKFPLK 417 (453)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--E-TA~G~yP~e 417 (453)
+.. ......++.+++.|..+++++ ++. |..| ....+..++|.+++.+ . +....++..
T Consensus 93 -----~~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 93 -----EAS---EHIHRLLQLIKSAGIKAGLVL--------NPA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred -----ccc---hhHHHHHHHHHHcCCEEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 111 223456888999999888852 111 2222 2344455678665532 2 233455566
Q ss_pred HHHHHHHHHHH
Q 012928 418 AVKVMHTVALR 428 (453)
Q Consensus 418 aV~~m~~I~~~ 428 (453)
..+.++++...
T Consensus 153 ~~~~i~~~~~~ 163 (220)
T PRK05581 153 VLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHH
Confidence 67777766543
No 147
>PRK09389 (R)-citramalate synthase; Provisional
Probab=77.34 E-value=1.2e+02 Score=33.26 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=96.3
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cC--EEEEeCC
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SD--GAMVARG 339 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sD--gImIgRG 339 (453)
+|..++..| +...+.|+|.|=+.| +.+..|...++.+.+ .+.+..|.+..-+. .+.++..++. .| .++++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 466676555 455679999987654 467778777776554 34456677666543 2234444433 44 3455455
Q ss_pred CccccC----CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHH-HhCccEEEecCcccCCCC
Q 012928 340 DLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKF 414 (453)
Q Consensus 340 DLg~el----g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETA~G~y 414 (453)
|+-.+. ..+++.......++.|+++|..+.+.. ....+.+..-+.+++.++ ..|+|.+.| .+|.=+..
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l-~DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAGIEAGADRICF-CDTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHHHhCCCCEEEE-ecCCCCcC
Confidence 553222 223455555677788999998877642 233334444455555544 569999998 58988999
Q ss_pred HHHHHHHHHHHHHH
Q 012928 415 PLKAVKVMHTVALR 428 (453)
Q Consensus 415 P~eaV~~m~~I~~~ 428 (453)
|.+.-++++.+..+
T Consensus 171 P~~~~~lv~~l~~~ 184 (488)
T PRK09389 171 PEKTYELFKRLSEL 184 (488)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988887777543
No 148
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=77.21 E-value=43 Score=32.92 Aligned_cols=133 Identities=11% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCC---
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--- 347 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~--- 347 (453)
.-+..-++.|+|+|.+- ++...++.++-+++++.|....+.-+=+|+ ++.++.++...|.|++ ++++=|+
T Consensus 75 ~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGfgGQ 147 (220)
T COG0036 75 RYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGFGGQ 147 (220)
T ss_pred HHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCCccc
Confidence 44455568899999876 577778889999999999888999888997 5668999999999988 3444454
Q ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHH
Q 012928 348 -------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 420 (453)
Q Consensus 348 -------e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~ 420 (453)
+++..+++.+-+ .| +..+- +. +--+. .-+..+...|+|.++..+---.++.-.+.++
T Consensus 148 ~Fi~~~l~Ki~~lr~~~~~----~~-~~~Ie-------VD-GGI~~---~t~~~~~~AGad~~VaGSalF~~~d~~~~i~ 211 (220)
T COG0036 148 KFIPEVLEKIRELRAMIDE----RL-DILIE-------VD-GGINL---ETIKQLAAAGADVFVAGSALFGADDYKATIR 211 (220)
T ss_pred ccCHHHHHHHHHHHHHhcc----cC-CeEEE-------Ee-CCcCH---HHHHHHHHcCCCEEEEEEEEeCCccHHHHHH
Confidence 233333333322 33 43331 12 22221 2234556689999988653333433456666
Q ss_pred HHHHHH
Q 012928 421 VMHTVA 426 (453)
Q Consensus 421 ~m~~I~ 426 (453)
.++...
T Consensus 212 ~~~~~~ 217 (220)
T COG0036 212 ELRGEL 217 (220)
T ss_pred HHHHHh
Confidence 666543
No 149
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.87 E-value=14 Score=35.86 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=63.1
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE-EecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHH
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVP 351 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa-kIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~ 351 (453)
+..++.|++.|-+++ +++.-+..++++-++.. ++.|-| -|=|++ .+++.+++ ++-+ +.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~---~a~~a~~aGA~Fi-vsP~------------ 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRKEVP-DALIGAGTVLNPE---QLRQAVDAGAQFI-VSPG------------ 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEE-ECCC------------
Confidence 455677888887777 66666665555544432 333333 233333 33333433 3333 3322
Q ss_pred HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 352 ~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
.-..+++.|+++|.|++- +.-| .+++..|...|+|.+=|---...|
T Consensus 89 -~~~~v~~~~~~~~i~~iP-----------G~~T---ptEi~~A~~~Ga~~vKlFPA~~~G 134 (204)
T TIGR01182 89 -LTPELAKHAQDHGIPIIP-----------GVAT---PSEIMLALELGITALKLFPAEVSG 134 (204)
T ss_pred -CCHHHHHHHHHcCCcEEC-----------CCCC---HHHHHHHHHCCCCEEEECCchhcC
Confidence 245899999999999773 2233 445789999999999885433343
No 150
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.82 E-value=5.2 Score=41.21 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHH
Q 012928 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (453)
Q Consensus 102 KIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a 150 (453)
-+.+.+|+..+..+.++.++++|++++=+|++||+.+.+.++++.+|+.
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3455667655678899999999999999999999998888888888764
No 151
>PRK08999 hypothetical protein; Provisional
Probab=76.76 E-value=35 Score=34.26 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcC
Q 012928 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (453)
Q Consensus 114 ~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~ 155 (453)
.+.+++++.+|+..+-|-.-+.+.++..+.++.+++..++++
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~ 188 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAG 188 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 357888999999999999999999888888888888777654
No 152
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=76.48 E-value=18 Score=35.75 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=85.7
Q ss_pred CCCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChh-----hhccHHHHHhh---c-
Q 012928 262 LPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD-----SIPNLHSIISA---S- 331 (453)
Q Consensus 262 lp~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~-----gv~NldeI~~~---s- 331 (453)
-|..|+.|...| ..|.++++..|++. |..|...+++|... ....|..-|==|. ++.-.+-..+. +
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~-~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAd 92 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGS-TVVRVCTVIGFPLGANTTAVKAAEAREAIENGAD 92 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccC-CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCC
Confidence 477888887544 77888998877774 66777888888643 2333444442222 22222222221 2
Q ss_pred --CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHH-HHHHhCccEEEecC
Q 012928 332 --DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLSG 407 (453)
Q Consensus 332 --DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vmLs~ 407 (453)
|.++ -.|-|- +=.++.|..-.+.+.++|..+ -..||+-|.. -|..|....+ -++..|+|.|=-|.
T Consensus 93 EiDmVi-nig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~---------Lt~ee~~~A~~i~~~aGAdFVKTST 161 (228)
T COG0274 93 EIDMVI-NIGALK-SGNWEAVEREIRAVVEACADAVVLKVILETGL---------LTDEEKRKACEIAIEAGADFVKTST 161 (228)
T ss_pred eeeeee-eHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEeccc---------cCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 3322 222221 111245556666777777664 4457876554 4455544333 34678999987765
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 012928 408 ETAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~ 426 (453)
.=+-|.=-+|.|+.|++++
T Consensus 162 Gf~~~gAT~edv~lM~~~v 180 (228)
T COG0274 162 GFSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCCHHHHHHHHHHh
Confidence 4344555679999999987
No 153
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.33 E-value=24 Score=33.36 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=63.5
Q ss_pred hHHHHHhhhhcCCcEEEeccc-cCHHHH-HHHH-HHHHhcCCCceEEEEecChhhhccHHHHHhh--cCEEEEeCCCccc
Q 012928 269 DWEDIKFGVDNQVDFYAVSFV-KDAKVV-HELK-DYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA 343 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV-~sa~dv-~~v~-~~L~~~~~~i~IIakIET~~gv~NldeI~~~--sDgImIgRGDLg~ 343 (453)
+.+|++.+.+.|+|+|.+-|. .++..+ .+.. ++.......+.-++-+-+. -++.+.+++.. .|+|-++..|
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC---
Confidence 457888889999999999875 356655 3333 3333233323333333333 24555566654 6899987443
Q ss_pred cCCCCCHHHHHHHHHHHHHH-cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 344 ELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~-aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
+ .. .++..++ .|.+++.+-. -...+ + .+...+...|+|.+++-..|.
T Consensus 84 --~---~~-----~~~~l~~~~~~~~i~~i~-------~~~~~--~-~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 --S---PE-----YCAQLRARLGLPVIKAIR-------VKDEE--D-LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred --C---HH-----HHHHHHhhcCCcEEEEEe-------cCChh--h-HHHhhhccccCCEEEEcCCCC
Confidence 1 11 1122222 3777764311 11111 1 223456668999999965554
No 154
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.22 E-value=80 Score=30.81 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=85.1
Q ss_pred HHHHhhhhcCCcEEEecccc----------CHHHHHHHHHHHHhcCCCceEEEE-------e---c---ChhhhccHHHH
Q 012928 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIHVIVK-------I---E---SADSIPNLHSI 327 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~----------sa~dv~~v~~~L~~~~~~i~IIak-------I---E---T~~gv~NldeI 327 (453)
+.++++.++|.|+|=+++.. +.+++..+++.+.+.|-.+.-+.- + + ..++++.+...
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 56677789999999887532 356788899999888755433210 1 0 12356666666
Q ss_pred Hhh-----cCEEEEeCCCccccCC----CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHh
Q 012928 328 ISA-----SDGAMVARGDLGAELP----IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (453)
Q Consensus 328 ~~~-----sDgImIgRGDLg~elg----~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (453)
+.. ++.+.+..++....-. .+.+.....++...+.++|..+.+ |-|-....++.++..++...+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v-- 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI-- 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc--
Confidence 654 4677765443221111 123344457788888888987664 444344456667777776666
Q ss_pred CccEEEecCcc----cCCCCHHHHHH
Q 012928 399 GADAVMLSGET----AHGKFPLKAVK 420 (453)
Q Consensus 399 G~D~vmLs~ET----A~G~yP~eaV~ 420 (453)
+.+.+-+.-++ ..|..|.+.++
T Consensus 173 ~~~~~~~~~D~~h~~~~~~~~~~~l~ 198 (284)
T PRK13210 173 DSPWLTVYPDVGNLSAWGNDVWSELK 198 (284)
T ss_pred CCCceeEEecCChhhhcCCCHHHHHH
Confidence 34444444444 24667766654
No 155
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=76.16 E-value=48 Score=34.69 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred cceeecCCCccCCCCCCHhhHHHH-HhhhhcCCcEEEe-ccccCHH------HHHHHHHHHHhcCCCceEEEEecChhhh
Q 012928 250 RRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAV-SFVKDAK------VVHELKDYLKSCNADIHVIVKIESADSI 321 (453)
Q Consensus 250 ~KgVnlp~~~~~lp~ltekD~~DI-~~a~~~gvd~I~l-SfV~sa~------dv~~v~~~L~~~~~~i~IIakIET~~gv 321 (453)
|-|..-|++. +|.+++-.| +...+.|++.|=+ ||+ ++. |-.++.+.+... ....+.+-+=+.+++
T Consensus 55 RDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~-~~~~~~~l~~n~~di 127 (347)
T PLN02746 55 RDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNL-EGARFPVLTPNLKGF 127 (347)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhc-cCCceeEEcCCHHHH
Confidence 3344445543 455666444 4556789999855 566 442 323333334332 122222222244444
Q ss_pred ccHHHHHhh-cCE--EEEeCCCcccc----CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhh-ccCCCCchHH---HH
Q 012928 322 PNLHSIISA-SDG--AMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAE---VS 390 (453)
Q Consensus 322 ~NldeI~~~-sDg--ImIgRGDLg~e----lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM-~~~~~PtrAE---v~ 390 (453)
+.. ++. .|. +++.-.|+-.. ...++......++++.|+++|..+... + || ..++..+|++ +.
T Consensus 128 e~A---~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~l~ 200 (347)
T PLN02746 128 EAA---IAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSKVA 200 (347)
T ss_pred HHH---HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHHHH
Confidence 332 222 454 44444443222 223556666789999999999987421 0 11 1234444444 33
Q ss_pred HH-HHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 391 DI-AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 391 Dv-~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
++ -.+...|+|.+.| .+|.=-..|.+..++++.+..+
T Consensus 201 ~~~~~~~~~Gad~I~l-~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 201 YVAKELYDMGCYEISL-GDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHcCCCEEEe-cCCcCCcCHHHHHHHHHHHHHh
Confidence 33 4467789999999 4888888899999999988654
No 156
>PLN02282 phosphoglycerate kinase
Probab=76.08 E-value=9.5 Score=40.67 Aligned_cols=210 Identities=16% Similarity=0.166 Sum_probs=113.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHH----HHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeecCCC
Q 012928 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHAS----HQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (453)
Q Consensus 101 TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~----~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRtG~l~ 176 (453)
|+|-+++ .+|+.|++.|..|.= +||-..-. .-.+-.-.+..++.++ ++|...-|.-||+++--
T Consensus 40 ~RI~a~l-------pTI~~l~~~gakvVl--~SHlGRP~g~~~~~SL~~va~~Ls~lL~-~~V~fv~d~~g~~~~~~--- 106 (401)
T PLN02282 40 TRIRAAV-------PTIKYLMGHGARVIL--CSHLGRPKGVTPKYSLKPLVPRLSELLG-VEVVMANDCIGEEVEKL--- 106 (401)
T ss_pred HHHHHHH-------HHHHHHHHCCCeEEE--EecCCCCCCCCcccCHHHHHHHHHHHHC-CCeEECCCCCCHHHHHH---
Confidence 5555554 589999999998766 48854321 1112222233445555 88988889999876521
Q ss_pred CceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceeecC
Q 012928 177 QPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVR 256 (453)
Q Consensus 177 ~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVnlp 256 (453)
--.|+.|+.+.|-.-+....+.. |.++|.+.+..---||+.|.-=... ...-++ -|
T Consensus 107 -i~~l~~G~ilLLEN~RF~~~E~~---~~~~~a~~LA~l~DvyVNDAFg~aH---R~haS~-------------~g---- 162 (401)
T PLN02282 107 -VAELPEGGVLLLENVRFYKEEEK---NDPEFAKKLASLADVYVNDAFGTAH---RAHAST-------------EG---- 162 (401)
T ss_pred -HhcCCCCCEEEEeccccCccccc---CHHHHHHHHHHhCcEeeechhhhhh---hcccch-------------hh----
Confidence 13577888877765443322221 4456777776654588888321100 000000 00
Q ss_pred CCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhccHHHHHhhcCE
Q 012928 257 GKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASDG 333 (453)
Q Consensus 257 ~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~II--akIET~~gv~NldeI~~~sDg 333 (453)
+|. .++ ..+.+.-+ ..++..+.+.+...... +.|+ +|+.+.-++ ++.++..+|.
T Consensus 163 -----i~~-----------~l~--~~~aG~lm---ekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~v--i~~Ll~kvD~ 219 (401)
T PLN02282 163 -----VAK-----------YLK--PSVAGFLM---QKELDYLVGAVANPKKPFAAIVGGSKVSTKIGV--IESLLEKVDI 219 (401)
T ss_pred -----hhh-----------hcC--ccccchHH---HHHHHHHHHHhcCCCCCeEEEEcCCcHHhHHHH--HHHHHHhhhh
Confidence 000 000 00001110 12344444444322211 2333 488887666 7777888999
Q ss_pred EEEeCC-------CccccCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 012928 334 AMVARG-------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 334 ImIgRG-------DLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
+++|-+ -.|.++|- ++....-++|++.+++.|+.+++
T Consensus 220 lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~l 267 (401)
T PLN02282 220 LLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLL 267 (401)
T ss_pred heeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeC
Confidence 998853 24556654 23334445899999999887664
No 157
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=76.01 E-value=37 Score=34.14 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=90.6
Q ss_pred CCCCCCHhhHHHH-Hhhhh--cCCcEEEeccccCHHHHHHHHHHHHhcCC-CceEEEEecChhhhccHHHHHhhc-CEEE
Q 012928 261 NLPSITDKDWEDI-KFGVD--NQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISAS-DGAM 335 (453)
Q Consensus 261 ~lp~ltekD~~DI-~~a~~--~gvd~I~lSfV~sa~dv~~v~~~L~~~~~-~i~IIakIET~~gv~NldeI~~~s-DgIm 335 (453)
--|..|+.|++.+ +.|.+ .++..|+++ +..+..+++.|...+. ++++.+-|==|.|-...+..+..+ .++-
T Consensus 19 L~p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~ 94 (257)
T PRK05283 19 LNDDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIA 94 (257)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 3477888887555 66777 588888775 7788888998864444 688888886666666655544431 1111
Q ss_pred EeCC--CccccCCC------CCHHHHHHHHHHHHHHcCCC--EEEEechhhhhccCCCCchHH-HHHH-HHHHHhCccEE
Q 012928 336 VARG--DLGAELPI------EDVPLLQEDIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAE-VSDI-AIAVREGADAV 403 (453)
Q Consensus 336 IgRG--DLg~elg~------e~v~~aqk~Ii~~c~~aGkp--vi~aTqmLeSM~~~~~PtrAE-v~Dv-~nav~~G~D~v 403 (453)
-|-- |+-+.+|. +.+..-.+.+..+|.. |++ ||+=|. .-+..| +..+ --++..|+|.|
T Consensus 95 ~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~---------~L~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 95 YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETG---------ELKDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecc---------ccCCHHHHHHHHHHHHHhCCCEE
Confidence 1111 23333332 2344444566666642 444 666443 334443 4433 35677899998
Q ss_pred EecCcccCCCCHHHHHHHHHHHHHH
Q 012928 404 MLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 404 mLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
=-|.-=..+.=.++.|+.|++.+++
T Consensus 165 KTSTGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 165 KTSTGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHh
Confidence 7653322222347999999988764
No 158
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=75.98 E-value=65 Score=32.59 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=77.5
Q ss_pred ceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh---hhhccCCCC
Q 012928 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML---ESMIDHPTP 384 (453)
Q Consensus 309 i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL---eSM~~~~~P 384 (453)
+++........-++.+.+-+.. .+.||+-.-+| ++++....-+++.+.|+..|.++-..-..+ |.+.....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7888888766555555555544 67899976665 556777778999999999998765332222 111111000
Q ss_pred chHHHHHHHHHHH-hCccEEEecCcccCCCC---HHHHHHHHHHHHHHHh
Q 012928 385 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRTE 430 (453)
Q Consensus 385 trAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~aE 430 (453)
+-....++..++. .|+|.+-.+--|..|.| |.--++.+++|+....
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~ 200 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN 200 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC
Confidence 0112445567776 79999999888888888 5556777888877653
No 159
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.95 E-value=81 Score=31.38 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=75.7
Q ss_pred HHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~ 349 (453)
.+..+...|+|+|.+--.- +.+++.++-++..+.| +.+++-+-|.+-++. ..+. +|.|.+..-||... .. .
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~~---A~~~gadiIgin~rdl~~~-~~-d 197 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELER---ALKLGAPLIGINNRNLKTF-EV-D 197 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHH---HHHcCCCEEEECCCCcccc-cC-C
Confidence 4677788999998875332 4556666666665543 445554445543322 2222 78888887777533 21 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
...-.+++.... ...+++. .++.-|. .|+..+...|+|+++..+.-..-+.|.++++-+.
T Consensus 198 -~~~~~~l~~~~p-~~~~vIa---------egGI~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 198 -LETTERLAPLIP-SDRLVVS---------ESGIFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred -HHHHHHHHHhCC-CCCEEEE---------EeCCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 222233333221 1234443 3444443 3566777889999998766667788988887553
No 160
>PRK15447 putative protease; Provisional
Probab=75.90 E-value=36 Score=34.62 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=69.4
Q ss_pred hHHHHHhhh-hcCCcEEEecccc-------CHHHHHHHHHHHHhcCCCceE-EEEe-cChhhhccHHHHHhh-cCEEEEe
Q 012928 269 DWEDIKFGV-DNQVDFYAVSFVK-------DAKVVHELKDYLKSCNADIHV-IVKI-ESADSIPNLHSIISA-SDGAMVA 337 (453)
Q Consensus 269 D~~DI~~a~-~~gvd~I~lSfV~-------sa~dv~~v~~~L~~~~~~i~I-IakI-ET~~gv~NldeI~~~-sDgImIg 337 (453)
..+++-+++ +.|+|.|-+.... +.+++.++.+++.+.|..+.+ +..| -..+-++.+.++++. .|+|+++
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEe
Confidence 456666665 5699998886321 568888888888888877665 3354 456566677777765 4677763
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 338 RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
|+| .+..++ +.|.|++..|||= .-. .. .+.-+-..|++.+.||-|-
T Consensus 96 --d~g------~l~~~~--------e~~~~l~~d~~ln-------i~N-~~--a~~~l~~~G~~rv~ls~EL 141 (301)
T PRK15447 96 --DLG------AVRLLA--------ERGLPFVAGPALN-------CYN-AA--TLALLARLGATRWCMPVEL 141 (301)
T ss_pred --CHH------HHHHHH--------hcCCCEEEecccc-------cCC-HH--HHHHHHHcCCcEEEECCcC
Confidence 333 222222 3489998887741 000 01 1123334577777777664
No 161
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=75.89 E-value=53 Score=32.14 Aligned_cols=134 Identities=13% Similarity=0.211 Sum_probs=70.7
Q ss_pred hHHHHHhhhhcCCcEEEecc--ccCHHHHHHHHHHHHhcCCCceE--EEE---ecCh---hhhccHHHHHhh-----cCE
Q 012928 269 DWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHV--IVK---IESA---DSIPNLHSIISA-----SDG 333 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSf--V~sa~dv~~v~~~L~~~~~~i~I--Iak---IET~---~gv~NldeI~~~-----sDg 333 (453)
+.+|++..+..|++.+.+.- .++++-+.+ ...+.++++.+ =++ +-+. +.-.+..++++. ++.
T Consensus 86 s~edv~~~l~~Ga~kvviGs~~l~~p~l~~~---i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ 162 (241)
T PRK14024 86 DDESLEAALATGCARVNIGTAALENPEWCAR---VIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSR 162 (241)
T ss_pred CHHHHHHHHHCCCCEEEECchHhCCHHHHHH---HHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCE
Confidence 45778888888999876642 345554444 44443444321 011 1010 011233333332 465
Q ss_pred EEEe-CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 334 AMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 334 ImIg-RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
+++- +.==+..-|+ .+. ..+++ ++....|+|.+ ...-+..++.........|+|++|+..---.|
T Consensus 163 iiv~~~~~~g~~~G~-d~~-~i~~i---~~~~~ipvias---------GGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 163 YVVTDVTKDGTLTGP-NLE-LLREV---CARTDAPVVAS---------GGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred EEEEeecCCCCccCC-CHH-HHHHH---HhhCCCCEEEe---------CCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 6553 2211222243 322 22333 34568999985 44555544444433345699999998777789
Q ss_pred CCHHHHH
Q 012928 413 KFPLKAV 419 (453)
Q Consensus 413 ~yP~eaV 419 (453)
.++++-.
T Consensus 229 ~~~~~~~ 235 (241)
T PRK14024 229 AFTLPEA 235 (241)
T ss_pred CCCHHHH
Confidence 9987754
No 162
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=75.57 E-value=1.2e+02 Score=33.58 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=98.6
Q ss_pred CCHhhHHHHH-hhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecC-hhhh--c---cHHHHHhh-cC--E
Q 012928 265 ITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSI--P---NLHSIISA-SD--G 333 (453)
Q Consensus 265 ltekD~~DI~-~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET-~~gv--~---NldeI~~~-sD--g 333 (453)
+|..++-.|. ...+.|+|.|=+.| .-++.|...++.+.+..-.+..|.+..=+ ...+ + .++..+.+ .+ .
T Consensus 20 ~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~ 99 (526)
T TIGR00977 20 FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVT 99 (526)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEE
Confidence 4677776664 44678999996643 24788888888776432234566665522 2222 1 23433333 34 3
Q ss_pred EEEeCCCccccC--C--CCCHHHHHHHHHHHHHHcCCCEEE-EechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecC
Q 012928 334 AMVARGDLGAEL--P--IEDVPLLQEDIIRRCRSMQKPVIV-ATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSG 407 (453)
Q Consensus 334 ImIgRGDLg~el--g--~e~v~~aqk~Ii~~c~~aGkpvi~-aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ 407 (453)
+++.--|+-.+- + .+++.......++.++.+|..|.+ ++.+.+.. +-+...+.+++.+ ...|+|.+.|.
T Consensus 100 i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~~~a~~aGad~i~i~- 174 (526)
T TIGR00977 100 IFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATLATAQQAGADWLVLC- 174 (526)
T ss_pred EEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHHHHHHhCCCCeEEEe-
Confidence 444444554432 2 245666668889999999998754 43332211 1122335555554 45699999996
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 012928 408 ETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~~~a 429 (453)
+|.=+..|.+.-+++..+..+.
T Consensus 175 DTvG~~~P~~v~~li~~l~~~~ 196 (526)
T TIGR00977 175 DTNGGTLPHEISEITTKVKRSL 196 (526)
T ss_pred cCCCCcCHHHHHHHHHHHHHhC
Confidence 9999999999999999887654
No 163
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.42 E-value=8.2 Score=39.29 Aligned_cols=66 Identities=6% Similarity=0.186 Sum_probs=48.4
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh--hccHHHHHhh-cCEEEEeC
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g--v~NldeI~~~-sDgImIgR 338 (453)
...+++..+++.|+|+|.+-. -+++++.++...+++.+.++.+. =.-| .+|+.+.++. +|+|.++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~le----AsGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIE----ASGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEE----EECCCCHHHHHHHHHcCCCEEEEch
Confidence 456677778899999999985 47888888877776545555433 3333 4788888877 89999985
No 164
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=75.37 E-value=54 Score=33.82 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHH--------------------------------------------HhcC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYL--------------------------------------------KSCN 306 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L--------------------------------------------~~~~ 306 (453)
.-|..+++.|+|+|.+. ++|+..++++= ...|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 55677889999988653 56777666541 1123
Q ss_pred CCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCch
Q 012928 307 ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 386 (453)
Q Consensus 307 ~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Ptr 386 (453)
........|.+.+--+-..++...+|.+++---|-.+ +|+|.+.. . ..+-+--++| ..-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA------~--l~~e~~kliA----------~V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA------D--LQHEKVKLIA----------GVKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH------H--hhccceEEEE----------EeccH
Confidence 3445666777777766677777677876665444432 34444321 1 1222222333 12344
Q ss_pred HHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhc
Q 012928 387 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 387 AEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
.|..-.+..+..|+|+|+|.++ .| +-++-..++..++|+
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 5566667889999999999754 44 667888888888884
No 165
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=74.95 E-value=42 Score=38.28 Aligned_cols=158 Identities=14% Similarity=0.195 Sum_probs=97.8
Q ss_pred HhhHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEEEec--ChhhhccHHHHHhhcCEEEEeCCCcc
Q 012928 267 DKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLG 342 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIakIE--T~~gv~NldeI~~~sDgImIgRGDLg 342 (453)
+.-.+.|....+.|++.|-+. -.+.|+.+..+++.|.+.+-+++++|-|- -..|+. -++.+|.|=|-||.++
T Consensus 110 eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~----a~~~vdkiRINPGN~~ 185 (733)
T PLN02925 110 EATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALR----VAECFDKIRVNPGNFA 185 (733)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHH----HHHhcCCeEECCcccC
Confidence 344455666678899997654 44555556666777777788999999873 334443 2334899999999988
Q ss_pred ccCC-C--------------CCHHHHHHHHHHHHHHcCCCEEEEec--hhhhhc-cCCCCchHH-----HHHHHHHHHhC
Q 012928 343 AELP-I--------------EDVPLLQEDIIRRCRSMQKPVIVATN--MLESMI-DHPTPTRAE-----VSDIAIAVREG 399 (453)
Q Consensus 343 ~elg-~--------------e~v~~aqk~Ii~~c~~aGkpvi~aTq--mLeSM~-~~~~PtrAE-----v~Dv~nav~~G 399 (453)
-.-. + +++..--..++.+|+++|+|+=+-|+ =|+.=+ ..-.+|..- +.-+--+-..|
T Consensus 186 ~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~ 265 (733)
T PLN02925 186 DRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 265 (733)
T ss_pred CccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCC
Confidence 6521 1 23333445799999999999765543 111100 000122111 23344555689
Q ss_pred ccEEEecCcccCCCCHHHHHHHHHHHHHHHhc
Q 012928 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
++=+++| .+--.|...|...+..+.+.++
T Consensus 266 f~diviS---~KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 266 YHNFVFS---MKASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred CCcEEEE---EEcCChHHHHHHHHHHHHHHHh
Confidence 9999998 4555677777777777666443
No 166
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.68 E-value=67 Score=33.05 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc---ccCCCCHHHHHHHHHHHHHHHhc
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE---TAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E---TA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
..|+|.+ .+.-+ ..|+..++..|+|+|+++.- .... =+..+++++..+..+...
T Consensus 255 ~ipIias---------GGIr~---~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~ 311 (326)
T cd02811 255 DLPLIAS---------GGIRN---GLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRT 311 (326)
T ss_pred CCcEEEE---------CCCCC---HHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 6787764 33333 57899999999999999752 1222 344556677777776654
No 167
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.62 E-value=57 Score=32.65 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEec
Q 012928 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (453)
Q Consensus 294 dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTq 373 (453)
.+..++++.++. .+.+++-+-+.+.++- +.+.+|.+.||.+++.. ..+++++.+.||||++.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~---~~e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk-- 128 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEE---AYDYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFK-- 128 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHH---HHhcCCEEEECcccccC-----------HHHHHHHHccCCeEEEe--
Confidence 455555555443 5667777766666544 44469999999776643 56777788899999995
Q ss_pred hhhhhccCC-CCchHHHHHHHHHHH-hCccEEEecC
Q 012928 374 MLESMIDHP-TPTRAEVSDIAIAVR-EGADAVMLSG 407 (453)
Q Consensus 374 mLeSM~~~~-~PtrAEv~Dv~nav~-~G~D~vmLs~ 407 (453)
++ .+|-.|+...+..+. .|..-++|..
T Consensus 129 -------~G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 129 -------RGLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred -------CCCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 44 678888888888777 4665566653
No 168
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=74.61 E-value=28 Score=35.43 Aligned_cols=123 Identities=15% Similarity=0.231 Sum_probs=81.1
Q ss_pred HHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh---h
Q 012928 301 YLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML---E 376 (453)
Q Consensus 301 ~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL---e 376 (453)
+.++.+-.++|....... .++.+.+.+.. .+.||+-.-+| ++++....-+++.+.|+++|.++=..-.-+ |
T Consensus 70 ~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l----~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e 144 (293)
T PRK07315 70 LVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSHL----PVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE 144 (293)
T ss_pred HHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC
Confidence 333433356888888887 66655555554 68999975544 566777888999999999999974332222 2
Q ss_pred hhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHH----HHHHHHHHHHHHH
Q 012928 377 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVALRT 429 (453)
Q Consensus 377 SM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~----eaV~~m~~I~~~a 429 (453)
-++..... .....++..++..|+|++-++-.|..|.||- --.+.|++|....
T Consensus 145 d~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 145 DGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred ccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 22111111 1234456677789999999999999999964 3356677766654
No 169
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=74.02 E-value=1.3e+02 Score=32.10 Aligned_cols=192 Identities=20% Similarity=0.137 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeecCCCeee-ecCCCCceeecCCCEEEEEeecCCCCccEEEe-cccccccccccCCEEE
Q 012928 142 KTIDLVKEYNSQFEDKAVAIMLDTKGPEVR-SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSV-NYDDFVNDVEVGDILL 219 (453)
Q Consensus 142 ~~I~~iR~a~~~~~~~~iaIllDLkGPkIR-tG~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v-~~~~l~~~vk~Gd~Il 219 (453)
++...|+.+-+..- ..++|-.++.+-+.+ .|.+ -+.|+..+- .+. ..+|= ++..+--.++.|+.|+
T Consensus 10 el~~~ik~~le~~~-~~v~v~gEis~~~~~~sGH~--Yf~Lkd~~a-~i~--------~~~~~~~~~~~~~~~~~G~~v~ 77 (438)
T PRK00286 10 ELNRYVKSLLERDL-GQVWVRGEISNFTRHSSGHW--YFTLKDEIA-QIR--------CVMFKGSARRLKFKPEEGMKVL 77 (438)
T ss_pred HHHHHHHHHHHhhC-CcEEEEEEeCCCeeCCCCeE--EEEEEcCCc-EEE--------EEEEcChhhcCCCCCCCCCEEE
Confidence 45555565544432 678888888777665 3322 123332211 010 11221 2344555678999987
Q ss_pred Ee--------CCeeEEEEEEEeCCeEEEEEeeCcEec----------ccceeecCCCccCCCCCCHhhHHHHHhhhhcCC
Q 012928 220 VD--------GGMMSLAVKSKTKDLVKCIVVDGGELK----------SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQV 281 (453)
Q Consensus 220 ID--------DG~I~L~V~ev~~~~v~~~V~ngG~L~----------s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gv 281 (453)
+- .|.++|.|.++++..+ |.|. ..+|+-=|....++|.+.
T Consensus 78 v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p--------------- 135 (438)
T PRK00286 78 VRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFP--------------- 135 (438)
T ss_pred EEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCC---------------
Confidence 74 5778887777765431 2111 223443344444454432
Q ss_pred cEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh--------cCEEEEeCCCccccCCCCCHHH-
Q 012928 282 DFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--------SDGAMVARGDLGAELPIEDVPL- 352 (453)
Q Consensus 282 d~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--------sDgImIgRGDLg~elg~e~v~~- 352 (453)
.-|++=-..+++-+..+...+.+....+.+..-==+.+|-....+|+++ .|.|+|+||-=+. |++..
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~----eDL~~F 211 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL----EDLWAF 211 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH----HHhhcc
Confidence 2223322345666666666665554433332211233444444555543 3999999983221 12221
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q 012928 353 LQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi~a 371 (453)
=-..++++..+...|||.|
T Consensus 212 n~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 212 NDEAVARAIAASRIPVISA 230 (438)
T ss_pred CcHHHHHHHHcCCCCEEEe
Confidence 2356777788889999987
No 170
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=73.15 E-value=67 Score=33.98 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=78.1
Q ss_pred eEEEEEeeCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEecc---ccCHHHHHHHHHHHHhcCCCceEE
Q 012928 236 LVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHVI 312 (453)
Q Consensus 236 ~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSf---V~sa~dv~~v~~~L~~~~~~i~II 312 (453)
.|+-++=.|. +...|=.||+..+ |+ +++.+.- ++.|.|.+..|- +.+.+|+.++-+.|++.+...+|-
T Consensus 137 ~iEIKigQGA--KpG~GG~Lp~~KV-----~~-~ia~~R~-~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVg 207 (368)
T PF01645_consen 137 MIEIKIGQGA--KPGEGGHLPGEKV-----TE-EIARIRG-VPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVG 207 (368)
T ss_dssp EEEEE---TT--STTT--EE-GGG-------H-HHHHHHT-S-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEE
T ss_pred eEEEEEecCc--cccCcceechhhc-----hH-HHHHHhC-CCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEE
Confidence 3444444444 2344566777664 33 4444443 567888876543 577888888888888888888999
Q ss_pred EEecChhhhccHHHHHh-h-cCEEEEeCCCcc---------ccCCCCCHHHHHHHHHHHHHHcCC---CEEEEechhhhh
Q 012928 313 VKIESADSIPNLHSIIS-A-SDGAMVARGDLG---------AELPIEDVPLLQEDIIRRCRSMQK---PVIVATNMLESM 378 (453)
Q Consensus 313 akIET~~gv~NldeI~~-~-sDgImIgRGDLg---------~elg~e~v~~aqk~Ii~~c~~aGk---pvi~aTqmLeSM 378 (453)
.|+=.-..++.+...+. + +|.|.|.-++=| -+.|++ +..+..++.....+.|. ..++++
T Consensus 208 vKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~s------ 280 (368)
T PF01645_consen 208 VKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIAS------ 280 (368)
T ss_dssp EEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEE------
T ss_pred EEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEe------
Confidence 99976666655555332 2 799999866533 233443 33445555556665553 344442
Q ss_pred ccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 379 IDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 379 ~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
...-| -.|++-++..|+|+|-+.
T Consensus 281 --Ggl~t---~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 281 --GGLRT---GDDVAKALALGADAVYIG 303 (368)
T ss_dssp --SS--S---HHHHHHHHHCT-SEEE-S
T ss_pred --CCccC---HHHHHHHHhcCCCeeEec
Confidence 22222 578999999999999764
No 171
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=73.05 E-value=52 Score=32.03 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=73.9
Q ss_pred HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh-hcCEEEEeCCCccccCCCCCHH
Q 012928 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIEDVP 351 (453)
Q Consensus 273 I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~-~sDgImIgRGDLg~elg~e~v~ 351 (453)
++.+...|+|+|=++ ++-.++..+++.+. .+. +|-. =+....+.+.+..+ -+|.+.+|+- +. ......-+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~~-iiG~-s~~~s~~~a~~A~~~gaDYv~~Gpv-~t-~tK~~~~p 150 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHA---PKM-IVGF-GNLRDRHGAMEIGELRPDYLFFGKL-GA-DNKPEAHP 150 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcC---CCC-EEEe-cCCCCHHHHHHhhhcCCCEEEECCC-CC-CCCCCCCC
Confidence 344566788887666 22234555665542 221 3321 11111122222112 2799999986 32 11111101
Q ss_pred HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 352 ~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.-...+-+.++...+||+.- .+. + ..++......|+|++-+.+.--.-..|.++++-+.+++.+
T Consensus 151 ~gl~~l~~~~~~~~iPvvAI---------GGI-~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQ---------AGS-D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CChHHHHHHHHhCCCCEEEE---------eCC-C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 11111223466678998763 121 2 3345677888999999988877778899999999888753
No 172
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=72.73 E-value=89 Score=29.70 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=78.6
Q ss_pred CHhhHHHH-HhhhhcCCcEEEec-----cccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccH---HHHHhh-cCEEE
Q 012928 266 TDKDWEDI-KFGVDNQVDFYAVS-----FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNL---HSIISA-SDGAM 335 (453)
Q Consensus 266 tekD~~DI-~~a~~~gvd~I~lS-----fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~Nl---deI~~~-sDgIm 335 (453)
+..|..++ +...+.|++++.+. |-.+.+++..+++.. +++|+.+ ..+.+. ++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 44455555 34467899988652 335778888887764 5666654 234333 333333 79999
Q ss_pred EeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCH
Q 012928 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (453)
Q Consensus 336 IgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (453)
++--||.. ..-+.+++.+...|..+++.+. + ..++..+...|+|.+..++.+. ..++
T Consensus 100 l~~~~~~~--------~~~~~~~~~~~~~g~~~~v~v~-----------~---~~e~~~~~~~g~~~i~~t~~~~-~~~~ 156 (217)
T cd00331 100 LIVAALDD--------EQLKELYELARELGMEVLVEVH-----------D---EEELERALALGAKIIGINNRDL-KTFE 156 (217)
T ss_pred EeeccCCH--------HHHHHHHHHHHHcCCeEEEEEC-----------C---HHHHHHHHHcCCCEEEEeCCCc-cccC
Confidence 87555531 4557778888889998876531 3 2336677788999999884431 2222
Q ss_pred HHHHHHHHHHHHH
Q 012928 416 LKAVKVMHTVALR 428 (453)
Q Consensus 416 ~eaV~~m~~I~~~ 428 (453)
... ..+.+++..
T Consensus 157 ~~~-~~~~~l~~~ 168 (217)
T cd00331 157 VDL-NTTERLAPL 168 (217)
T ss_pred cCH-HHHHHHHHh
Confidence 222 445555443
No 173
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=72.38 E-value=1.1e+02 Score=32.82 Aligned_cols=261 Identities=19% Similarity=0.191 Sum_probs=146.3
Q ss_pred hhcccccCCCCCCCCCccCCCCCCCCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHH---HHHHHH
Q 012928 75 LSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTID---LVKEYN 151 (453)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~---~iR~a~ 151 (453)
+-.++.+++-+.-++++..+.-..|++.| -||. ...++-.-+.+|+|+|--.|-..+-..|+.+++ |+..|.
T Consensus 75 ~peT~~iR~D~~W~ga~ipp~l~dRrvEI---TGPp--~Rkm~iNalNsganvfMtDFEDs~SPtW~N~i~GqVNlyDAv 149 (552)
T KOG1261|consen 75 LPETEVIRNDPTWQGAIIPPGLIDRRVEI---TGPP--LRKMLINALNSGANVFMTDFEDSNSPTWENMIYGQVNLYDAV 149 (552)
T ss_pred CchhhhcccCCCCcCCcCCchhhhccccc---cCcc--hHHHHHHHhcccceeeeccccccCCccHhhhhhhhccHHHHh
Confidence 33445566655555666655566788888 5885 466788889999999999999888888888875 233332
Q ss_pred hhcCCCcEEEEeecCCCeeeecCCCCceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEE
Q 012928 152 SQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231 (453)
Q Consensus 152 ~~~~~~~iaIllDLkGPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~e 231 (453)
... | |..-|--| ..+.|....-+.+.--++ . .+. -..|+|||--+.-..-+
T Consensus 150 rn~------I--~f~~ptt~-----keYkLn~~~a~L~VRPRG------W-----Hl~-----EkH~~Id~eP~sgslfD 200 (552)
T KOG1261|consen 150 RNQ------I--DFTTPTTR-----KEYKLNGKHAVLIVRPRG------W-----HLP-----EKHLLIDDEPISGSLFD 200 (552)
T ss_pred ccC------c--cccCCCcc-----ceeeecCceeEEEEccCc------c-----cCc-----hheeeecCCcccceeee
Confidence 211 1 22222211 123333222222221111 0 111 12456665333222211
Q ss_pred EeCCeEEEEEeeCcEecccceeecCCCccCCC-CCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhc-----
Q 012928 232 KTKDLVKCIVVDGGELKSRRHLNVRGKSANLP-SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC----- 305 (453)
Q Consensus 232 v~~~~v~~~V~ngG~L~s~KgVnlp~~~~~lp-~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~----- 305 (453)
+.|= +-. -++.|+.+ .| -|+-+|+.+.+++.+-..+...-+
T Consensus 201 ----------------------------FGLyffHN--AK~li~~G--sG-PyFYLPKmeh~~EaklWndvF~~aed~~G 247 (552)
T KOG1261|consen 201 ----------------------------FGLYFFHN--AKELIKQG--SG-PYFYLPKMEHHEEAKLWNDVFCVAEDKIG 247 (552)
T ss_pred ----------------------------eeeeEEec--HHHHHhcC--CC-CeeecccccchHHHHHHHHHHHHHHHhcC
Confidence 0000 001 12223322 13 345577777777766554443221
Q ss_pred --CCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCcccc--------------------CCCCCHHHHHHHHHH
Q 012928 306 --NADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAE--------------------LPIEDVPLLQEDIIR 359 (453)
Q Consensus 306 --~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~e--------------------lg~e~v~~aqk~Ii~ 359 (453)
...++--+.|||.-|.-.++||+-. +-|+=-||-|.-.+ |+-+=+...-+++|.
T Consensus 248 i~RGtIraTVLIEtLpA~FQm~EIiy~lrdhsvGLNCGRWDyifS~iKt~qnh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~ 327 (552)
T KOG1261|consen 248 IPRGTIRATVLIETLPAAFQMEEIIYQLRDHSVGLNCGRWDYIFSYIKTFQNHPDHLLPDRVQVGMTSPFMRAYSKRLIN 327 (552)
T ss_pred CCcCceEEEEeHhhchHHHhHHHHHHHHHhhcccccccchHHHHHHHHHHhhCccccCCccceeccCcHHHHHHHHHHHH
Confidence 2457777899999999999999965 56888888886544 111235556699999
Q ss_pred HHHHcCCCEE--EEechhhhhccCCCCchHH------HHHHHHHHHhCccEEEec
Q 012928 360 RCRSMQKPVI--VATNMLESMIDHPTPTRAE------VSDIAIAVREGADAVMLS 406 (453)
Q Consensus 360 ~c~~aGkpvi--~aTqmLeSM~~~~~PtrAE------v~Dv~nav~~G~D~vmLs 406 (453)
.|+..|+.++ +|.|+= -.-.|..-| -.|=-+-+.+|-|+-...
T Consensus 328 tCH~RGvHAMGGMAAqIP----IkdDp~ANekA~~lVr~DK~RE~t~GHDGtWvA 378 (552)
T KOG1261|consen 328 TCHRRGVHAMGGMAAQIP----IKDDPKANEKAMALVRNDKIREVTNGHDGTWVA 378 (552)
T ss_pred HHHhhcchhhccccccCc----cCCCcchhHHHHHHHhhhhhhhhhcCCCCceec
Confidence 9999999863 554421 112333222 233355677899987764
No 174
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.37 E-value=1.1e+02 Score=30.86 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCCHhhHHHH--------HhhhhcCCcEEEeccc-------------cCHHH------------HHHHHHHHH-hcCCC
Q 012928 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFV-------------KDAKV------------VHELKDYLK-SCNAD 308 (453)
Q Consensus 263 p~ltekD~~DI--------~~a~~~gvd~I~lSfV-------------~sa~d------------v~~v~~~L~-~~~~~ 308 (453)
..+|..|++.| +.+.+.|+|+|=+... +...| +.++-+.+. ..+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46788888776 2346789999866432 11111 122222222 24667
Q ss_pred ceEEEEecChh----------hhccHHHHHhh-cCEEEEeCCCccccCCC----CCHHHHHHHHHHH-HHHcCCCEEEEe
Q 012928 309 IHVIVKIESAD----------SIPNLHSIISA-SDGAMVARGDLGAELPI----EDVPLLQEDIIRR-CRSMQKPVIVAT 372 (453)
Q Consensus 309 i~IIakIET~~----------gv~NldeI~~~-sDgImIgRGDLg~elg~----e~v~~aqk~Ii~~-c~~aGkpvi~aT 372 (453)
..|..||--.+ +++-+..+.+. .|.|-+..++....... ..-.......++. ....+.|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 88899886432 22222222222 68888877764321110 0001111222222 233478887742
Q ss_pred chhhhhccCCCCchHHHHHHHHHHHh-CccEEEecC
Q 012928 373 NMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSG 407 (453)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs~ 407 (453)
..-|. .++..++.. |+|.|++..
T Consensus 289 ---------gi~t~---~~a~~~l~~g~aD~V~igR 312 (327)
T cd02803 289 ---------GIRDP---EVAEEILAEGKADLVALGR 312 (327)
T ss_pred ---------CCCCH---HHHHHHHHCCCCCeeeecH
Confidence 22233 345577777 799999863
No 175
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=72.33 E-value=1.3e+02 Score=31.51 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=98.0
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEec--ChhhhccHHHHHhhcCEEEEeCCCccccCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISASDGAMVARGDLGAELPI 347 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIE--T~~gv~NldeI~~~sDgImIgRGDLg~elg~ 347 (453)
.+.|....+.|.|.|-+. |.+.++...+++.-+ +.+++++|-|- -..|+ .++.+-+|.+=|-||.++-
T Consensus 37 v~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHFd~~lAl---~a~~~g~dkiRINPGNig~---- 106 (346)
T TIGR00612 37 VAQIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHFDYRLAA---LAMAKGVAKVRINPGNIGF---- 106 (346)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCCCcHHHH---HHHHhccCeEEECCCCCCC----
Confidence 344555567899998887 567777777766554 45799999873 33443 4455568999999999875
Q ss_pred CCHHHHHHHHHHHHHHcCCCE--EEEechhhh--hccCCCCchHH-----HHHHHHHHHhCccEEEecCcccCCCCHHHH
Q 012928 348 EDVPLLQEDIIRRCRSMQKPV--IVATNMLES--MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKA 418 (453)
Q Consensus 348 e~v~~aqk~Ii~~c~~aGkpv--i~aTqmLeS--M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP~ea 418 (453)
..--+.++++|+++|+|+ ++-..=|+. |.+.+.||..- ...+.-+-..|++=+.+| .+-..+..+
T Consensus 107 ---~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS---~KsSdv~~~ 180 (346)
T TIGR00612 107 ---RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS---MKASDVAET 180 (346)
T ss_pred ---HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHH
Confidence 455688999999999995 443333332 22344466433 333445556789988887 556667777
Q ss_pred HHHHHHHHHHHh
Q 012928 419 VKVMHTVALRTE 430 (453)
Q Consensus 419 V~~m~~I~~~aE 430 (453)
|+.-+.+..+.+
T Consensus 181 i~ayr~la~~~d 192 (346)
T TIGR00612 181 VAAYRLLAERSD 192 (346)
T ss_pred HHHHHHHHhhCC
Confidence 777777766554
No 176
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=72.27 E-value=17 Score=38.00 Aligned_cols=83 Identities=23% Similarity=0.271 Sum_probs=55.2
Q ss_pred hhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHH-HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH--HHHHH
Q 012928 318 ADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVP-LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIA 393 (453)
Q Consensus 318 ~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~-~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE--v~Dv~ 393 (453)
+..++.+...++. +|.|.+|--+++.-....... .-.++++..|+++||.++++.+++= .+...+ ...+.
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l~ 86 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYLD 86 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHHH
Confidence 3445555655555 899999966776655442211 2257889999999999988754321 222222 45577
Q ss_pred HHHHhCccEEEec
Q 012928 394 IAVREGADAVMLS 406 (453)
Q Consensus 394 nav~~G~D~vmLs 406 (453)
.++..|+|++.++
T Consensus 87 ~l~e~GvDaviv~ 99 (347)
T COG0826 87 RLVELGVDAVIVA 99 (347)
T ss_pred HHHHcCCCEEEEc
Confidence 8889999999986
No 177
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=72.23 E-value=6.4 Score=43.36 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=75.8
Q ss_pred CCcEEEeccccCHHHHHHHHHHHHh-------cCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccC---
Q 012928 280 QVDFYAVSFVKDAKVVHELKDYLKS-------CNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL--- 345 (453)
Q Consensus 280 gvd~I~lSfV~sa~dv~~v~~~L~~-------~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~el--- 345 (453)
+-=|+-+|+.+++.+..-..+.+.. ....+++.+.|||..|.-+++||+-+ +-|+=-||=|...++
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 4457889999999999876555432 23568999999999999999999987 336666665533211
Q ss_pred ---------------CC--CCHHHHHHHHHHHHHHcCCCEE--EEechhhh--hccCCCCchHHHHHHHHHHHhCccEEE
Q 012928 346 ---------------PI--EDVPLLQEDIIRRCRSMQKPVI--VATNMLES--MIDHPTPTRAEVSDIAIAVREGADAVM 404 (453)
Q Consensus 346 ---------------g~--e~v~~aqk~Ii~~c~~aGkpvi--~aTqmLeS--M~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (453)
+. +=+....+..+..|++.|...+ ++.++.-. |..++.--..=..|=-.-+.+|+|+-+
T Consensus 283 ~~~~~~~vlPdR~~v~m~~pfm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg~W 362 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQPFMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDGAW 362 (526)
T ss_dssp TCCGCCBB---GGGGGCGSHHHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SEEE
T ss_pred hhhCCCccccccccccccCHHHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCccc
Confidence 11 1255667999999999997753 32222110 111111111113333567789999999
Q ss_pred ec
Q 012928 405 LS 406 (453)
Q Consensus 405 Ls 406 (453)
..
T Consensus 363 Va 364 (526)
T PF01274_consen 363 VA 364 (526)
T ss_dssp ES
T ss_pred cc
Confidence 84
No 178
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=71.98 E-value=84 Score=31.25 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=70.5
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcC-EEEE-eCCCccccCCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD-GAMV-ARGDLGAELPIE 348 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sD-gImI-gRGDLg~elg~e 348 (453)
+-++.+.+.|+|+|.++.- ..++..++.+.+++.|-....+..=.| ..+.+..|++.+| .+++ ++...+ |..
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCc
Confidence 3456667889999999864 456777777878776655333333333 4678889999888 3333 332221 111
Q ss_pred -CHHHHHHHHHHHHHH-cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 349 -DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 349 -~v~~aqk~Ii~~c~~-aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.+..-....++..++ .++|+++- .+.-|.. ++..+...|+|+++..
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~vg---------fGI~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLVG---------FGISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEEe---------CCCCCHH---HHHHHHHcCCCEEEEC
Confidence 122223344444444 36787763 3443433 4667888999999875
No 179
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=71.91 E-value=59 Score=33.67 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=66.8
Q ss_pred HhhHHHHHhhhhcCCcEEEeccc----------cCHHHHHHHHHHHHhcCC----CceEEEEecChhhhccHHHHHhh--
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNA----DIHVIVKIESADSIPNLHSIISA-- 330 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV----------~sa~dv~~v~~~L~~~~~----~i~IIakIET~~gv~NldeI~~~-- 330 (453)
..|...+..-+..++|+|-+.|- +.++.+.++-+.+.+.-. +++|++||----..+++.++++.
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34443332223446898877652 123334433333332211 48999999732222245555543
Q ss_pred ---cCEEEEeCC-----Cccc-----cC-CC--CCH-HHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHH
Q 012928 331 ---SDGAMVARG-----DLGA-----EL-PI--EDV-PLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSD 391 (453)
Q Consensus 331 ---sDgImIgRG-----DLg~-----el-g~--e~v-~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~D 391 (453)
+|||.+--. |+.. .. |+ +.+ +...+.+-...++. +.|++-. .+.-+ ..|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~---------GGI~s---~ed 303 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGV---------GGIDS---AED 303 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEE---------CCCCC---HHH
Confidence 688877532 1110 01 11 111 22333333334444 4677653 33444 457
Q ss_pred HHHHHHhCccEEEecCcc
Q 012928 392 IAIAVREGADAVMLSGET 409 (453)
Q Consensus 392 v~nav~~G~D~vmLs~ET 409 (453)
+..++..|+|+|++....
T Consensus 304 a~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 304 AYEKIRAGASLVQIYSGL 321 (344)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 778888999999997554
No 180
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=71.77 E-value=1.1e+02 Score=32.85 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHhhhhcCCcEEEecc-ccCHHHHHHHHHH-H--HhcC---CCceEEEEecChhhh--------------------c
Q 012928 270 WEDIKFGVDNQVDFYAVSF-VKDAKVVHELKDY-L--KSCN---ADIHVIVKIESADSI--------------------P 322 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSf-V~sa~dv~~v~~~-L--~~~~---~~i~IIakIET~~gv--------------------~ 322 (453)
.+.++..++.|++.|..|. ..-...+...+.. + ...+ ....|++|+-+++-. .
T Consensus 85 ~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i 164 (418)
T cd04742 85 EGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI 164 (418)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC
Confidence 3456778899999887764 2211222122211 0 0000 124589998765333 2
Q ss_pred cHHHHHhh-----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc--------CCCEEEEechhhhhccCCCCchHHH
Q 012928 323 NLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEV 389 (453)
Q Consensus 323 NldeI~~~-----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a--------Gkpvi~aTqmLeSM~~~~~PtrAEv 389 (453)
+.+|-..+ +|.|.+. .|=|-+.|-.......-.|.....+. ..|||.| .++-| -
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAA---------GGI~t---g 231 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAA---------GGIGT---P 231 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEE---------CCCCC---H
Confidence 33332222 5888887 77766665322223333333333222 4788887 44555 3
Q ss_pred HHHHHHHHhCccEEEe
Q 012928 390 SDIAIAVREGADAVML 405 (453)
Q Consensus 390 ~Dv~nav~~G~D~vmL 405 (453)
.+++-++..|+|+|++
T Consensus 232 ~~vaAA~alGAd~V~~ 247 (418)
T cd04742 232 EAAAAAFALGADFIVT 247 (418)
T ss_pred HHHHHHHHcCCcEEee
Confidence 4578889999999986
No 181
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=71.73 E-value=97 Score=31.78 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=49.6
Q ss_pred CCCceEEEEecChhhhccHHHHHhh-----cCEEEE-eCC----C-----ccccC-CC---CCHHHHHHHHHHHHHHc--
Q 012928 306 NADIHVIVKIESADSIPNLHSIISA-----SDGAMV-ARG----D-----LGAEL-PI---EDVPLLQEDIIRRCRSM-- 364 (453)
Q Consensus 306 ~~~i~IIakIET~~gv~NldeI~~~-----sDgImI-gRG----D-----Lg~el-g~---e~v~~aqk~Ii~~c~~a-- 364 (453)
+.+++|++|+---...+++.++++. +|+|.+ ++- + +.... |+ ..-+.+.+.+-...+..
T Consensus 200 ~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 200 GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG 279 (327)
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCC
Confidence 3458899999422222345555543 688875 321 0 11111 11 12233344444444444
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
..|++.. .+.-| ..|+..++..|+|+||+...-
T Consensus 280 ~ipIi~~---------GGI~t---~~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 280 KIPIIGV---------GGISS---GEDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred CCcEEEE---------CCCCC---HHHHHHHHHcCCCHHhccHHH
Confidence 4677653 33444 456778888999999997543
No 182
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=71.67 E-value=74 Score=30.99 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=76.8
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh-------hccHHHHHhh----cCEEEEeC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-------IPNLHSIISA----SDGAMVAR 338 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g-------v~NldeI~~~----sDgImIgR 338 (453)
.+|++..+..|++-|.++- ....+ ..+++++.+.+.+ .+++-|....+ ..++.+.++. ++.+++-
T Consensus 90 ~edv~~~l~~Ga~~viigt-~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~- 165 (233)
T cd04723 90 LENAQEWLKRGASRVIVGT-ETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVL- 165 (233)
T ss_pred HHHHHHHHHcCCCeEEEcc-eeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEE-
Confidence 6778878889999887763 34555 5667777766553 35666655444 2234444433 4666663
Q ss_pred CCccccCCC--CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHH
Q 012928 339 GDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL 416 (453)
Q Consensus 339 GDLg~elg~--e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~ 416 (453)
|+..+-.. ..+. ..+++ ++....|++++ .+.-+ ..|+..+...|+|++++..---.|+++.
T Consensus 166 -di~~~G~~~g~~~~-~~~~i---~~~~~ipvi~~---------GGi~s---~edi~~l~~~G~~~vivGsal~~g~~~~ 228 (233)
T cd04723 166 -DIDRVGSGQGPDLE-LLERL---AARADIPVIAA---------GGVRS---VEDLELLKKLGASGALVASALHDGGLTL 228 (233)
T ss_pred -EcCccccCCCcCHH-HHHHH---HHhcCCCEEEe---------CCCCC---HHHHHHHHHcCCCEEEEehHHHcCCCCH
Confidence 44332211 1222 22333 44568999986 44445 4455566677999999976555787776
Q ss_pred HHH
Q 012928 417 KAV 419 (453)
Q Consensus 417 eaV 419 (453)
+.+
T Consensus 229 ~~~ 231 (233)
T cd04723 229 EDV 231 (233)
T ss_pred HHH
Confidence 644
No 183
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=71.40 E-value=88 Score=29.12 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=76.8
Q ss_pred HHHHHhhhhcCCcEEEec-----cccC-HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCcc
Q 012928 270 WEDIKFGVDNQVDFYAVS-----FVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG 342 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lS-----fV~s-a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg 342 (453)
.++++.+.+.|+|.|.+- |+.+ ......++++-...+..+.+-.++...+ +-++.+... +||+.+--
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~---- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP---- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc----
Confidence 366777788999999883 6544 3333333333322222333335666543 335555555 79988821
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC--cccC-CCCHHHHH
Q 012928 343 AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLKAV 419 (453)
Q Consensus 343 ~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETA~-G~yP~eaV 419 (453)
+.. ......++.+++.|..+++.. ++. |..| ....+..++|.+++.+ .|.. ..++...+
T Consensus 88 ---~~~---~~~~~~~~~~~~~g~~~~~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 88 ---EAS---EHIHRLLQLIKDLGAKAGIVL--------NPA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---CCc---hhHHHHHHHHHHcCCcEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 111 223566688899998877642 111 2222 3345566789887632 1223 35667777
Q ss_pred HHHHHHHHHHh
Q 012928 420 KVMHTVALRTE 430 (453)
Q Consensus 420 ~~m~~I~~~aE 430 (453)
+.++++.....
T Consensus 150 ~~i~~i~~~~~ 160 (210)
T TIGR01163 150 EKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHHH
Confidence 77777765444
No 184
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=70.74 E-value=94 Score=31.39 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHHhhhhcCCcEEEeccccCH--------HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEe-CCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDA--------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa--------~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIg-RGD 340 (453)
+.++.+.+.|+|.|.+.. ..+ +.+..+++.+ ..++++|.= ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC-
Confidence 345555677999887753 222 3444444432 367888831 222333333333 7998874 22
Q ss_pred ccccC--CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC--CCHH
Q 012928 341 LGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPL 416 (453)
Q Consensus 341 Lg~el--g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G--~yP~ 416 (453)
+..+ +... .....++.+... -..|+|.+ .+.-+ ..|+..++..|+|+||+..---.+ .+-.
T Consensus 204 -G~~~~~g~~~-~~~l~~i~~~~~-~~ipvia~---------GGI~~---~~d~~kal~lGAd~V~ig~~~l~~~~~~g~ 268 (299)
T cd02809 204 -GRQLDGAPAT-IDALPEIVAAVG-GRIEVLLD---------GGIRR---GTDVLKALALGADAVLIGRPFLYGLAAGGE 268 (299)
T ss_pred -CCCCCCCcCH-HHHHHHHHHHhc-CCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcHHHHHHHHhcCH
Confidence 2222 2221 122222222221 14787763 44444 467889999999999986411100 0011
Q ss_pred HHH-HHHHHHHHHHhcC
Q 012928 417 KAV-KVMHTVALRTESS 432 (453)
Q Consensus 417 eaV-~~m~~I~~~aE~~ 432 (453)
+.| +++..+..+.+..
T Consensus 269 ~~v~~~i~~l~~el~~~ 285 (299)
T cd02809 269 AGVAHVLEILRDELERA 285 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 233 4666666655543
No 185
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.54 E-value=74 Score=30.86 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=61.3
Q ss_pred eccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc-C--EEEEeCCC--------ccccCCCC--CHHH
Q 012928 286 VSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS-D--GAMVARGD--------LGAELPIE--DVPL 352 (453)
Q Consensus 286 lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s-D--gImIgRGD--------Lg~elg~e--~v~~ 352 (453)
+=...++++...+.+.|-+.|-...= .-.-|+.+++.+.++.+.. | .++||-|= .+.+.|.. --|.
T Consensus 18 vir~~~~~~a~~~~~al~~~Gi~~iE-it~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 18 VVRGESKEEALKISLAVIKGGIKAIE-VTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS 96 (213)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEE-EECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC
Confidence 33345666666666666544322111 2334666777777766553 2 36666551 11112211 1234
Q ss_pred HHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
....+++.|+++|.|++=- .-| .+++..+...|+|.+-+-
T Consensus 97 ~~~~v~~~~~~~~i~~iPG-----------~~T---~~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 97 FNRETAKICNLYQIPYLPG-----------CMT---VTEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCHHHHHHHHHcCCCEECC-----------cCC---HHHHHHHHHcCCCEEEEC
Confidence 4578999999999998742 223 345668889999999984
No 186
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.47 E-value=65 Score=33.03 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=74.9
Q ss_pred eccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHH-H
Q 012928 286 VSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-S 363 (453)
Q Consensus 286 lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~-~ 363 (453)
+.-..++++|.++++.. +++||+|+=--- +...+.+.+. +|.| | ..+..-+ + ..++...+ +
T Consensus 57 ~~Rm~~p~~I~aIk~~V-----~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp----a-d~~~~~~K~~ 119 (293)
T PRK04180 57 VARMADPKMIEEIMDAV-----SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP----A-DEEYHIDKWD 119 (293)
T ss_pred eeecCCHHHHHHHHHhC-----CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc----h-HHHHHHHHHH
Confidence 33457888888777655 688888764322 5555555544 7777 4 2222111 1 12222233 3
Q ss_pred cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcC
Q 012928 364 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (453)
Q Consensus 364 aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (453)
.+.|++.- .- .+.+.-+++..|+|+|--++|.-.|+ -+|||+-|+.|..+.-.-
T Consensus 120 f~~~fmad-----------~~---~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L 173 (293)
T PRK04180 120 FTVPFVCG-----------AR---NLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRL 173 (293)
T ss_pred cCCCEEcc-----------CC---CHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 47776541 22 36667899999999999999988998 589999999999887654
No 187
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=70.11 E-value=54 Score=31.16 Aligned_cols=142 Identities=21% Similarity=0.256 Sum_probs=82.3
Q ss_pred CCCCHhhHHHH-HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh-------h-cCE
Q 012928 263 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-------A-SDG 333 (453)
Q Consensus 263 p~ltekD~~DI-~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~-------~-sDg 333 (453)
|..|..|.+.+ +.+.+.++|.|+++ +..+..+++++.. ..+.+-+-+=.+.|-...+..+. . +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 77788887555 66778899999876 6667777777643 34555555655655444444443 2 454
Q ss_pred EEEeCCCccccCCC------CCHHHHHHHHHHHHHHcCCCEEE--EechhhhhccCCCCchHHHHHHH-HHHHhCccEEE
Q 012928 334 AMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIV--ATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVM 404 (453)
Q Consensus 334 ImIgRGDLg~elg~------e~v~~aqk~Ii~~c~~aGkpvi~--aTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vm 404 (453)
+-+- +.+|. +.+..-..++.+.|. |+|+.+ -+..| +..++...+ -++..|+|.|=
T Consensus 86 vdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l---------~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 86 IDMV-----INIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL---------TDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred EEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC---------CHHHHHHHHHHHHHhCCCEEE
Confidence 4432 12221 224444455555554 788644 33222 344555543 35678999887
Q ss_pred ec-CcccCCCCHHHHHHHHHHHHH
Q 012928 405 LS-GETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 405 Ls-~ETA~G~yP~eaV~~m~~I~~ 427 (453)
-| |=++.|.- ++.|+.|++++.
T Consensus 150 TsTG~~~~~at-~~~v~~~~~~~~ 172 (203)
T cd00959 150 TSTGFGPGGAT-VEDVKLMKEAVG 172 (203)
T ss_pred cCCCCCCCCCC-HHHHHHHHHHhC
Confidence 64 22233333 478888888876
No 188
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.07 E-value=1.5e+02 Score=31.28 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=97.3
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEe--cChhhhccHHHHHhhcCEEEEeCCCccccCC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAELP 346 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakI--ET~~gv~NldeI~~~sDgImIgRGDLg~elg 346 (453)
-.+.|....+.|.|.|-+. |.+.++...++..-++. .++++|-| .-..|++.++ .-+|++=|-||.++
T Consensus 44 tv~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl~a~~---~G~~~iRINPGNig---- 113 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLALAAAE---AGADALRINPGNIG---- 113 (360)
T ss_pred HHHHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHHHHHH---hCCCEEEECCCCCC----
Confidence 3455555567899998887 56777777777665543 68999977 4444443322 34899999999983
Q ss_pred CCCHHHHHHHHHHHHHHcCCCE--EEEechhhhhcc--CCCCchHH-----HHHHHHHHHhCccEEEecCcccCCCCHHH
Q 012928 347 IEDVPLLQEDIIRRCRSMQKPV--IVATNMLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLK 417 (453)
Q Consensus 347 ~e~v~~aqk~Ii~~c~~aGkpv--i~aTqmLeSM~~--~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP~e 417 (453)
....--+.++++|+++|+|+ ++-..=|+.-.. .+.||..- ...+.-+-..|++=+.+| .+-..|.+
T Consensus 114 --~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS---~KsS~v~~ 188 (360)
T PRK00366 114 --KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS---VKASDVQD 188 (360)
T ss_pred --chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHH
Confidence 45667789999999999995 443333333222 23455322 333445556899999998 55666777
Q ss_pred HHHHHHHHHHHH
Q 012928 418 AVKVMHTVALRT 429 (453)
Q Consensus 418 aV~~m~~I~~~a 429 (453)
+|+.-+.+..+.
T Consensus 189 ~i~ayrlla~~~ 200 (360)
T PRK00366 189 LIAAYRLLAKRC 200 (360)
T ss_pred HHHHHHHHHhcC
Confidence 787777776554
No 189
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=69.93 E-value=8.3 Score=41.47 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=40.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 101 TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
-.+=+.+|....+.+..+.|+++|+++.-++.+||..+.+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455577777778899999999999999999999988877777777765
No 190
>PRK15447 putative protease; Provisional
Probab=69.82 E-value=30 Score=35.18 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=49.1
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.++++|+-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999997777765544 23556788888999999999986411 122457888888888899988753
No 191
>PLN02321 2-isopropylmalate synthase
Probab=69.78 E-value=1e+02 Score=34.95 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=94.2
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCc---eEEEEec-----ChhhhccHHHHHhhc---
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADI---HVIVKIE-----SADSIPNLHSIISAS--- 331 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i---~IIakIE-----T~~gv~NldeI~~~s--- 331 (453)
+|.+++-.| +...+.|+|.|=+.| .-++.|...++.+.......+ .++++|= +.++++..-+-+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 567777555 445679999998766 567788877776654322211 1122221 233333222211111
Q ss_pred -CEEEEeCCCccccC----CCCCHHHHHHHHHHHHHHcCCC-EEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEE
Q 012928 332 -DGAMVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVM 404 (453)
Q Consensus 332 -DgImIgRGDLg~el----g~e~v~~aqk~Ii~~c~~aGkp-vi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vm 404 (453)
=.++++-.|+-.+- ..+++......+++.|+++|.. +.+..+ ...+-....+.+++. +...|+|.+-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~a~~aGa~~I~ 258 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGEVIKAGATTLN 258 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 24666666654332 2356777778899999999985 544311 222222233444444 4557999999
Q ss_pred ecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 405 LSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
| .+|.=+..|.+.-+++..+..+.
T Consensus 259 L-~DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 259 I-PDTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred e-cccccCCCHHHHHHHHHHHHHhc
Confidence 9 58999999999999888887653
No 192
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=69.36 E-value=42 Score=33.65 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=55.5
Q ss_pred HHHHhhhhc-CCcEEEec------cccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeC
Q 012928 271 EDIKFGVDN-QVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~~-gvd~I~lS------fV~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgR 338 (453)
+.+++.++. |+++|.+. +.-+.++-.+ ++..++..+.++.||+-+- |.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 455788888 99998653 1122233333 3334445566789999874 44556555554444 79999865
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
-.... ..-+++...-+.| |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 43321 1223333333444 5566 7888875
No 193
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=68.87 E-value=1.2e+02 Score=31.05 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc--CEEEEeC------CCcc
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS--DGAMVAR------GDLG 342 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s--DgImIgR------GDLg 342 (453)
...+...+.|+|+|.-|-+.++.| ++-..++.. -+.++++ +..|++|-+... -.-||+- ||..
T Consensus 87 ~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~-f~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 87 VEAQILEALGVDYIDESEVLTPAD--EEYHIDKWD-FTVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred HHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence 344445678999999999888843 333444332 2566776 566677766542 1223332 1211
Q ss_pred c--------------cCCC--CCHHH-H-----HHHHHH-HHHHcCCCEE-EEechhhhhccCCCCchHHHHHHHHHHHh
Q 012928 343 A--------------ELPI--EDVPL-L-----QEDIIR-RCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (453)
Q Consensus 343 ~--------------elg~--e~v~~-a-----qk~Ii~-~c~~aGkpvi-~aTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (453)
- -.|+ +.+.. + =-.+++ .++....||+ +| ..+.-|.+ |+..+...
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPe---daa~vme~ 226 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPA---DAALMMQL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHH---HHHHHHHh
Confidence 0 0111 11111 0 012223 3334468887 44 34444544 45567788
Q ss_pred CccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 399 GADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
|+|++++.+.-..-..|.+.++.+.+....
T Consensus 227 GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 227 GADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 999999988777778899999988776654
No 194
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.41 E-value=11 Score=39.39 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=42.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCcEEEeecCCCChHHHHHHHHHHHHH
Q 012928 102 KIVCTIGPSTSSREMIWKLAEE--GMNVARLNMSHGDHASHQKTIDLVKEY 150 (453)
Q Consensus 102 KIi~TiGPss~s~e~i~~Li~a--GmnvaRiNfSHg~~e~~~~~I~~iR~a 150 (453)
.+.+.+|-..++.+.+++|+++ |+|+.=|..|||.-+...++|+.||+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 3555889888999999999995 999999999999998888888877763
No 195
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=68.30 E-value=96 Score=32.52 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhh-cCEEEEe-CCCccccCCCCCHHHHHHHHHHHHHHc--C
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSM--Q 365 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~-sDgImIg-RGDLg~elg~e~v~~aqk~Ii~~c~~a--G 365 (453)
+.+++..+++.. +.+|++| |-++ +......+. +|+|.+. -| |..+.- .+.....+.+.+.+. .
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld~--~~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLDG--GPASFDSLPEIAEAVNHR 276 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCCC--CchHHHHHHHHHHHhCCC
Confidence 567777777654 4678888 3222 222222222 7999884 11 222210 111112222223333 3
Q ss_pred CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 366 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 366 kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
.|+|.. .+.-+ ..|+..++..|+|+||+..
T Consensus 277 i~vi~d---------GGIr~---g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 277 VPIIFD---------SGVRR---GEHVFKALASGADAVAVGR 306 (351)
T ss_pred CeEEEE---------CCCCC---HHHHHHHHHcCCCEEEECH
Confidence 677764 34443 6789999999999999853
No 196
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.23 E-value=39 Score=33.44 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=54.7
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHHH-HHHHHhcCCCceEEEEecC---hhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~v-~~~L~~~~~~i~IIakIET---~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+. +.-+.++-.++ +...+..+.+++||+-+=+ .++++-.....+. +|++|+.+-
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55678888999998753 12233333333 3334445567889988743 3344444433333 799999765
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+.. .+-+.+...-+.| |.+.+.|+++.
T Consensus 102 ~y~~-~~~~~~~~~~~~i---a~~~~~pi~iY 129 (281)
T cd00408 102 YYNK-PSQEGIVAHFKAV---ADASDLPVILY 129 (281)
T ss_pred cCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 5433 2223344444444 34468888764
No 197
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=68.00 E-value=21 Score=40.46 Aligned_cols=211 Identities=16% Similarity=0.199 Sum_probs=112.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChH-HH---HHHHHHHHH-HHhhcCCCcEEEEeecCCCeeeecC
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA-SH---QKTIDLVKE-YNSQFEDKAVAIMLDTKGPEVRSGD 174 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e-~~---~~~I~~iR~-a~~~~~~~~iaIllDLkGPkIRtG~ 174 (453)
.|+|-+++ .+|+.|++.|..|.= +||-.+- .. .--++.+-+ .++.++ ++|...=|.-||+++--
T Consensus 35 d~RI~~~l-------pTI~~l~~~gakvvl--~SH~gRP~~~~~~~~SL~~va~~L~~~L~-~~V~f~~d~~g~~~~~~- 103 (645)
T PRK13962 35 DTRIRAAL-------PTIKYLLDHGAKVIL--VSHLGRPKGEFDPKFSMAPVAKRLSELLG-KEVIFAKDVIGDDAKKA- 103 (645)
T ss_pred cHhHHHHH-------HHHHHHHhCCCeEEE--EEecCCCCCCcCccCCHHHHHHHHHHHHC-CCeEECCCCCCHHHHHH-
Confidence 35555554 589999999998766 4886542 11 112333333 344455 88888888888876511
Q ss_pred CCCceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccceee
Q 012928 175 VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (453)
Q Consensus 175 l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~KgVn 254 (453)
--.|+.|+.+.|-.-+....+. -|.++|.+.+.+---||+.|.-=.. +
T Consensus 104 ---i~~l~~GeilLLEN~Rf~~~E~---~~d~~~~~~LA~l~DvyVNDAFg~a-----H--------------------- 151 (645)
T PRK13962 104 ---VAQLKEGDVLLLENVRFHKEET---KNDPEFAKELASLADIYVNDAFGTA-----H--------------------- 151 (645)
T ss_pred ---HhcCCCCcEEEEeccCcCcccc---cCHHHHHHHHHHhCCEEEechhhhh-----h---------------------
Confidence 1246777777765444332222 1345667666654457777731100 0
Q ss_pred cCCCccCCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEE--EEecChhhhccHHHHHhhc
Q 012928 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISAS 331 (453)
Q Consensus 255 lp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~II--akIET~~gv~NldeI~~~s 331 (453)
-.-+.+. . +...++. +.+.- =..++..+.+.+...... +.|+ +|+.+.-.+ ++.++..+
T Consensus 152 -----R~haS~~--g---i~~~lp~---~aG~l---mekEl~~L~k~l~~p~rP~vaIlGGaKvsdKi~v--l~~ll~~~ 213 (645)
T PRK13962 152 -----RAHASTA--G---VAEYLPA---VAGFL---MEKEIEFLGKALANPQRPFVAILGGAKVSDKIGV--IENLLEKV 213 (645)
T ss_pred -----hcccchh--h---hhhhhhh---hhhHH---HHHHHHHHHHHHcCCCCceEEEEcCccHHhHHHH--HHHHHHhC
Confidence 0000000 0 0000000 00000 023444555555432222 2333 588887666 67778889
Q ss_pred CEEEEeCC-------CccccCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 332 DGAMVARG-------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 332 DgImIgRG-------DLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
|.+++|-+ -.|.++|- ++....-++|+..+++.|+.+++-
T Consensus 214 D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~lP 264 (645)
T PRK13962 214 DKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLP 264 (645)
T ss_pred CEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEECC
Confidence 99999843 23444443 244455579999999999887653
No 198
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=67.90 E-value=18 Score=35.97 Aligned_cols=82 Identities=29% Similarity=0.336 Sum_probs=52.6
Q ss_pred cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 331 sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
+..+|---.=.|.-.|+.. ++..+.|++ +...|||+ ..+.-+ -+|++.+.+.|+|+|+++.-.|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIv---------DAGiG~---pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIV---------DAGIGT---PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEE---------ES---S---HHHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEE---------eCCCCC---HHHHHHHHHcCCceeehhhHHh
Confidence 3455554444444445443 344445543 44999998 445555 4678899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 012928 411 HGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~ 428 (453)
..+.|+.-.+-|+.-++.
T Consensus 209 ~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp TSSSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999988888766543
No 199
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=67.81 E-value=29 Score=34.72 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+. +--+.++-.+ ++...+..+.++.|++-+= |.++++......+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45577789999998873 2223333333 3344455566788998873 33444444443333 799999754
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
... ..+-+.+...-+.| |.+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i---~~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAI---AEEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 432 11113344444444 44557888765
No 200
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=67.18 E-value=75 Score=33.37 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 293 ~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
+.+..++++.++. .+.+++-+-....++-+ .+.+|.+-||-+++.- ..++.++.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l---~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVA---LDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 4566667776553 45677766666665444 4458999999777643 356777888999999964
Q ss_pred chhhhhccCCCCchHHHHHHHHHHH-hCccEEEec
Q 012928 373 NMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (453)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 406 (453)
.| .+|-.|+...++.+. .|.+-++|.
T Consensus 233 G~--------~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GL--------SATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CC--------CCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 32 267788888877776 566556665
No 201
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=66.95 E-value=1.1e+02 Score=30.84 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCCHhhHHHHHhhhhcCCcEEEecccc-------------CHHHHHHHHHHHHhcCCCceEEEEec------Ch-hhhcc
Q 012928 264 SITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVHELKDYLKSCNADIHVIVKIE------SA-DSIPN 323 (453)
Q Consensus 264 ~ltekD~~DI~~a~~~gvd~I~lSfV~-------------sa~dv~~v~~~L~~~~~~i~IIakIE------T~-~gv~N 323 (453)
.+|.+|.---+.+-+.|+|.|.+...- +.+++...-+.+.+.-+...|++=++ ++ ++++|
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~ 98 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRN 98 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHH
Confidence 446677766666677899988754210 11122221222233223445777664 33 35788
Q ss_pred HHHHHh-h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhh---hccCC-CCchHH--HHH
Q 012928 324 LHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLES---MIDHP-TPTRAE--VSD 391 (453)
Q Consensus 324 ldeI~~-~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeS---M~~~~-~PtrAE--v~D 391 (453)
...+++ + ++||-|--| ..+...|+++.++|.||+ +--|--.+ +...+ ...+++ +.+
T Consensus 99 a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~r 166 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLED 166 (264)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHH
Confidence 787877 3 789988533 245677888889999986 21221111 11112 222222 666
Q ss_pred HHHHHHhCccEEEec
Q 012928 392 IAIAVREGADAVMLS 406 (453)
Q Consensus 392 v~nav~~G~D~vmLs 406 (453)
.-.....|+|+++|-
T Consensus 167 a~a~~eAGA~~i~lE 181 (264)
T PRK00311 167 AKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHCCCCEEEEc
Confidence 666778999999993
No 202
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=66.79 E-value=1.1e+02 Score=28.56 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCHhhHHHHHhhhhcCCcEEEec--cccCHHHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhh-cCEEEEeCC
Q 012928 265 ITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 265 ltekD~~DI~~a~~~gvd~I~lS--fV~sa~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~-sDgImIgRG 339 (453)
.+.++...+..+++.|+++|=+. + .++.....++++-+... +..+++ |+-++... .+++..++ +|.|.+-..
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEecc
Confidence 34555555555568899988773 3 22222333333322222 233443 34444322 35555544 787776311
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc---cCCCCHH
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET---AHGKFPL 416 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET---A~G~yP~ 416 (453)
.+ .....+++..|+++|++++.+- .+ |.. -..++..+...|+|.+-+...+ ..+...+
T Consensus 86 -----~~----~~~~~~~i~~~~~~g~~~~~~~-------~~--~~t-~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~ 146 (206)
T TIGR03128 86 -----AD----DATIKGAVKAAKKHGKEVQVDL-------IN--VKD-KVKRAKELKELGADYIGVHTGLDEQAKGQNPF 146 (206)
T ss_pred -----CC----HHHHHHHHHHHHHcCCEEEEEe-------cC--CCC-hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH
Confidence 11 1234788899999999998741 11 211 1234556666799998775332 2233344
Q ss_pred HHHHHHHHH
Q 012928 417 KAVKVMHTV 425 (453)
Q Consensus 417 eaV~~m~~I 425 (453)
+-++.+++.
T Consensus 147 ~~i~~l~~~ 155 (206)
T TIGR03128 147 EDLQTILKL 155 (206)
T ss_pred HHHHHHHHh
Confidence 555555543
No 203
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=66.50 E-value=14 Score=34.73 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
+.+..+++.|+|.|.+=.. +++++.++.+.+...+.+ ++||-.-|+ +|+.++++. .|.|.+|.
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPR----VKIEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTT----SEEEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCc----EEEEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 4556678899999999764 789999998888777777 456656555 789999987 69999873
No 204
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=66.41 E-value=1.1e+02 Score=30.51 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred hHHHHH-hhhhcCCcEEEe-----ccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhc---cHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIK-FGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP---NLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~-~a~~~gvd~I~l-----SfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~---NldeI~~~-sDgImIgR 338 (453)
|..++. ...+.|++.|.+ -|-.+.+++..+++.. +++|+.| +=+- .+++.... +|++.+.-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 444453 335679999877 5668899999988764 5677753 1111 23443333 79998876
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
.+|. +...++++..|+..|..+++-+ -+.+ ++..+...|+|.+.+++.
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvev-----------h~~~---E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEV-----------HDEE---ELERALKLGAPLIGINNR 189 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEe-----------CCHH---HHHHHHHcCCCEEEECCC
Confidence 6653 2466888999999999988742 2333 345677889999998753
No 205
>TIGR03586 PseI pseudaminic acid synthase.
Probab=66.39 E-value=1e+02 Score=32.06 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=41.5
Q ss_pred HHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH-hCc-c
Q 012928 325 HSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGA-D 401 (453)
Q Consensus 325 deI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~-D 401 (453)
+.+... .|.+=||-+|+.. . .+++++.+.||||++.|. ..|..|+...+..+. .|. +
T Consensus 104 d~l~~~~v~~~KI~S~~~~n------~-----~LL~~va~~gkPvilstG---------~~t~~Ei~~Av~~i~~~g~~~ 163 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEITD------L-----PLIRYVAKTGKPIIMSTG---------IATLEEIQEAVEACREAGCKD 163 (327)
T ss_pred HHHHHcCCCEEEECCccccC------H-----HHHHHHHhcCCcEEEECC---------CCCHHHHHHHHHHHHHCCCCc
Confidence 333344 6788888887742 2 245556778999999765 457788888888886 466 4
Q ss_pred EEEec
Q 012928 402 AVMLS 406 (453)
Q Consensus 402 ~vmLs 406 (453)
.++|=
T Consensus 164 i~Llh 168 (327)
T TIGR03586 164 LVLLK 168 (327)
T ss_pred EEEEe
Confidence 44443
No 206
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=66.36 E-value=1.5e+02 Score=29.77 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=67.3
Q ss_pred HhhHHHH-HhhhhcC-CcEEEec------------cccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh--
Q 012928 267 DKDWEDI-KFGVDNQ-VDFYAVS------------FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 330 (453)
Q Consensus 267 ekD~~DI-~~a~~~g-vd~I~lS------------fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-- 330 (453)
..|.... +.+.+.| +|+|-+. +-++++.+.++-+.+.+.- +++|++||=- .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHH
Confidence 3444333 4445677 9998552 2233444444444444332 6789999841 23344445442
Q ss_pred ---cCEEEE-----eCC-Ccc-------ccCC----CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHH
Q 012928 331 ---SDGAMV-----ARG-DLG-------AELP----IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390 (453)
Q Consensus 331 ---sDgImI-----gRG-DLg-------~elg----~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~ 390 (453)
+|+|.+ |+. |+- ...| ....+.....+-+..+..++|+|.. ...-+ ..
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~---------GGI~~---~~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGM---------GGISS---AE 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEE---------CCCCC---HH
Confidence 588765 221 221 1111 1111222333333334458898863 33444 45
Q ss_pred HHHHHHHhCccEEEecCcccCC
Q 012928 391 DIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 391 Dv~nav~~G~D~vmLs~ETA~G 412 (453)
|+..++..|+|+|++..---.|
T Consensus 248 da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhcC
Confidence 6778888999999997443333
No 207
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.17 E-value=1.1e+02 Score=30.88 Aligned_cols=108 Identities=14% Similarity=0.258 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 292 a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+.+..++++..+. .+.+++-+-.+..++-+. +.+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~---~~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVA---DYADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHH---HhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45666777777553 566888777777665554 447999998766532 44666677899999996
Q ss_pred echhhhhccCCCCchHHHHHHHHHHH-hCccEEEe--cCcccCCCCHHHHHHHHH
Q 012928 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmL--s~ETA~G~yP~eaV~~m~ 423 (453)
|.| ..+-.|+...+..+. .|-.-++| .|-...-.||.+.|.+-.
T Consensus 141 ~G~--------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~ 187 (266)
T PRK13398 141 RGM--------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAA 187 (266)
T ss_pred CCC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHH
Confidence 432 346668777776665 46643333 332134589866555433
No 208
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=65.94 E-value=96 Score=31.06 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=80.4
Q ss_pred CCCHhhHHHHHhhhhcCCcEEEecccc-------------CHHHHHHHHHHHHhcCCCceEEEEec-------Chhhhcc
Q 012928 264 SITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVHELKDYLKSCNADIHVIVKIE-------SADSIPN 323 (453)
Q Consensus 264 ~ltekD~~DI~~a~~~gvd~I~lSfV~-------------sa~dv~~v~~~L~~~~~~i~IIakIE-------T~~gv~N 323 (453)
.+|.+|.---+.+-+.|+|.|....-- +-+++..--+.+.+.-+...|++=++ -.++++|
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence 345667665566667799988654211 11111111122222223344777665 1234677
Q ss_pred HHHHHh-h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhhh---ccCC-CCchHH--HHH
Q 012928 324 LHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESM---IDHP-TPTRAE--VSD 391 (453)
Q Consensus 324 ldeI~~-~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeSM---~~~~-~PtrAE--v~D 391 (453)
...+++ + ++||.|--+ ..+...|+++.++|+||+ +--|--..+ .... ...+++ +.+
T Consensus 96 a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~r 163 (254)
T cd06557 96 AARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLED 163 (254)
T ss_pred HHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHH
Confidence 777776 4 788888533 256777888899999987 211111111 1111 222233 677
Q ss_pred HHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 392 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.-.....|+|+++|- |- |. +.++.|+++.
T Consensus 164 a~a~~~AGA~~i~lE-----~v-~~---~~~~~i~~~v 192 (254)
T cd06557 164 ALALEEAGAFALVLE-----CV-PA---ELAKEITEAL 192 (254)
T ss_pred HHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhC
Confidence 777788999999993 22 32 3566666554
No 209
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=65.73 E-value=1.5e+02 Score=29.43 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=92.2
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEe-cChhhhccHHHHHhh-----cCEEE
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-----SDGAM 335 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakI-ET~~gv~NldeI~~~-----sDgIm 335 (453)
.++..++..| +...+.|++.|=+.| +.++.+...++.+ .+...++.+.+.+ -+..++ +..++. .|.|-
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l-~~~~~~~~~~~l~r~~~~~v---~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRI-AREVLNAEICGLARAVKKDI---DAAAEALKPAKVDRIH 91 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHhCCCCEEEEEccCCHhhH---HHHHHhCCCCCCCEEE
Confidence 3466666555 555678999987644 4477777655544 3433456666655 233344 333332 45443
Q ss_pred E--eCCCccc----cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecCc
Q 012928 336 V--ARGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGE 408 (453)
Q Consensus 336 I--gRGDLg~----elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~E 408 (453)
+ +-.|.-. ..+.++.......+++.|++.|..+.+.. ...+.-+.+.+.+++.. ...|+|.+.| .+
T Consensus 92 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l-~D 164 (268)
T cd07940 92 TFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINI-PD 164 (268)
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEE-CC
Confidence 3 2222211 11112334555788889999998766521 13333455555555544 5569999999 58
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 012928 409 TAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~a 429 (453)
|.=..+|.+.-+.++.+-.+.
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 888889999988888886644
No 210
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=65.64 E-value=1.6e+02 Score=30.03 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=79.1
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc--CEEEEeC------CC-
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS--DGAMVAR------GD- 340 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s--DgImIgR------GD- 340 (453)
....+...+.|+|+|..+...++ +.++-..++..- +.++|| +..+++|-+.+. -.=||+- |+
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MA------D~stleEal~a~~~Gad~I~TTl~gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVC------GARNLGEALRRISEGAAMIRTKGEAGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEc------cCCCHHHHHHHHHCCCCEEEecCCCCCCcH
Confidence 45556667899999998888777 344445554433 677887 445566655441 1113321 11
Q ss_pred -------------ccccCCCC--CHHH-H------HHHHHHHHHHcCCCEE-EEechhhhhccCCCCchHHHHHHHHHHH
Q 012928 341 -------------LGAELPIE--DVPL-L------QEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 397 (453)
Q Consensus 341 -------------Lg~elg~e--~v~~-a------qk~Ii~~c~~aGkpvi-~aTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (453)
+....|+. .++. . ...+-+.+.....|++ +| ..+.-|.+ ++..+..
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpe---na~~v~e 216 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPA---DAALMMQ 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHH---HHHHHHH
Confidence 00001110 0000 0 0112223334568987 44 44444543 3556678
Q ss_pred hCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.|+|+++..+.-..-..|.+.++.+......
T Consensus 217 ~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 217 LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 8999999987666667899999999887654
No 211
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=65.63 E-value=13 Score=38.74 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEeecCCCChHHHHHHHHHHHH
Q 012928 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 102 KIi~TiGPss~s~e~i~~Li~aG--mnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
.+.+.+|-..++.+.+++|+++| .|+.=|..|||.-+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 35558899889999999999996 9999999999999988888888886
No 212
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=65.04 E-value=1.9e+02 Score=30.97 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=99.1
Q ss_pred CCCHhhHHHHHhhh-hcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh-hhhc-cHHHHHhh-cC--EEEEe
Q 012928 264 SITDKDWEDIKFGV-DNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-DSIP-NLHSIISA-SD--GAMVA 337 (453)
Q Consensus 264 ~ltekD~~DI~~a~-~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~-~gv~-NldeI~~~-sD--gImIg 337 (453)
.+|.+++..|...+ +.|+|+|=+.|..+.....+..+.+..... +.+.+++-.. ..++ .++.++.+ .| .++++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~ 98 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAG-LFICALIAALARAIKRDIEALLEAGVDRIHIFIA 98 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcC-cccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEc
Confidence 34777887775554 589999988776555444444444442111 1122222211 1222 44445544 45 68898
Q ss_pred CCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhC-ccEEEecCcccCC
Q 012928 338 RGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSGETAHG 412 (453)
Q Consensus 338 RGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~ETA~G 412 (453)
-.|+.+...+ +++...-...++.++.+|..+... +|... +-...-+.+++.++..+ ++.+-| .+|-=+
T Consensus 99 tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~~ga~~i~l-~DTvG~ 171 (409)
T COG0119 99 TSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIEAGADRINL-PDTVGV 171 (409)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHHcCCcEEEE-CCCcCc
Confidence 8888777655 456677789999999999887752 22211 22222255566655544 999998 588888
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012928 413 KFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE 430 (453)
-.|-+.-..++.+..+.-
T Consensus 172 ~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 172 ATPNEVADIIEALKANVP 189 (409)
T ss_pred cCHHHHHHHHHHHHHhCC
Confidence 899998888888877653
No 213
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=64.94 E-value=1e+02 Score=31.51 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=77.7
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhc--CEEEEeC------CC-
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS--DGAMVAR------GD- 340 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~s--DgImIgR------GD- 340 (453)
....+...+.|+|+|.-|.+.++. .++-..++..- +.++++ +..|++|-+... -.-||+- ||
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrPa--de~~~~~K~~f-~vpfma------d~~~l~EAlrai~~GadmI~Tt~e~gTg~v 149 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTPA--DWTFHIDKKKF-KVPFVC------GARDLGEALRRINEGAAMIRTKGEAGTGNI 149 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCcH--HHHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCEEeccccCCCccH
Confidence 344444567899999999998883 33333343322 566666 566677666542 1223331 12
Q ss_pred ----------------c------------cccCCCCCHHHHHHHHHHHHHHcCCCEE-EEechhhhhccCCCCchHHHHH
Q 012928 341 ----------------L------------GAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSD 391 (453)
Q Consensus 341 ----------------L------------g~elg~e~v~~aqk~Ii~~c~~aGkpvi-~aTqmLeSM~~~~~PtrAEv~D 391 (453)
| +-+++. . ...+-+.++....||+ +| ..+.-|.+ |
T Consensus 150 ~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~-~----~elLkei~~~~~iPVV~fA--------iGGI~TPe---d 213 (287)
T TIGR00343 150 VEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRV-P----VELLLEVLKLGKLPVVNFA--------AGGVATPA---D 213 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCC-C----HHHHHHHHHhCCCCEEEec--------cCCCCCHH---H
Confidence 0 000100 0 0112222333467887 33 34555544 4
Q ss_pred HHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 392 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
+..+...|+|+|+..+.-.....|.+..+.+.+....
T Consensus 214 Aa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 214 AALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 6677889999999988777778899999988876654
No 214
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=64.72 E-value=26 Score=35.02 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred cCEEEEe-CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-HHHHHHHHHhCccEEEecCc
Q 012928 331 SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 331 sDgImIg-RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~E 408 (453)
+||+++. -.--+..+..++-..+.+.+++.++ -..|++.. ....+-.| +.-.-.+...|+|++|+..=
T Consensus 33 v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~g---------v~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 33 TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAG---------TGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred CCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe---------CCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 7899873 1111122232333333334443331 23566653 22333334 55556677889999999755
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 012928 409 TAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
.-...-+-+.++..+.|+..++-
T Consensus 103 ~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 103 YYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCC
Confidence 44433457788999999887753
No 215
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=64.52 E-value=21 Score=35.94 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=44.2
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..+++..+.+.|+|+|.+..+ .++++.++.+.+.....+++++| --|+ +|+.++++. +|+|.++.
T Consensus 192 t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 192 SLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 346666677899999999654 56677766666654333555444 3344 788888887 89997763
No 216
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=64.52 E-value=1.2e+02 Score=28.10 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=74.2
Q ss_pred HHHHhhhhcCCcEEEe-----ccccCH----HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAV-----SFVKDA----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~l-----SfV~sa----~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGD 340 (453)
+.++.+.+.|+|+|.+ +|+.+. +.+.++++. .+..+.+-.++.++. +.++.+... +||+.+-
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~---~~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh--- 87 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH---TDLPLDVHLMVENPE--RYIEAFAKAGADIITFH--- 87 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh---CCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEC---
Confidence 4567778899999998 765433 333344432 222333445666553 336666655 7998772
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC---cccCCCCHHH
Q 012928 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG---ETAHGKFPLK 417 (453)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~---ETA~G~yP~e 417 (453)
.+.. ......++.+++.|..+++.+. .. +..+ ....+..++|.+++.+ -|....++..
T Consensus 88 ----~~~~---~~~~~~~~~~~~~~~~~g~~~~-------~~--~~~~---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 88 ----AEAT---DHLHRTIQLIKELGMKAGVALN-------PG--TPVE---VLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred ----ccch---hhHHHHHHHHHHCCCeEEEEec-------CC--CCHH---HHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 1111 1224558888999998887531 11 1111 1233344578776532 2223357777
Q ss_pred HHHHHHHHHHHHh
Q 012928 418 AVKVMHTVALRTE 430 (453)
Q Consensus 418 aV~~m~~I~~~aE 430 (453)
..+.++++.+...
T Consensus 149 ~~~~i~~~~~~~~ 161 (211)
T cd00429 149 VLEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765554
No 217
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.18 E-value=23 Score=35.76 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=44.3
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..++...+++.|+|+|.+-.. +++++.++.+++.....++. ||=.-|+ +|+.++++. +|.|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~----ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVL----LEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE----EEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 356677788999999999764 77888777776643334443 3333344 566667666 89999974
No 218
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=64.10 E-value=23 Score=34.13 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=42.5
Q ss_pred eecCCCEEEEEeec--CCC---CccEEEecccccc--cccccCCEEEEe--CCeeEEEEEEEeCCeEE
Q 012928 180 ILKEGQEFNFTIKR--GVS---TEDTVSVNYDDFV--NDVEVGDILLVD--GGMMSLAVKSKTKDLVK 238 (453)
Q Consensus 180 ~L~~G~~v~lt~~~--~~~---~~~~I~v~~~~l~--~~vk~Gd~IlID--DG~I~L~V~ev~~~~v~ 238 (453)
-.+.|++++++... .++ ......++-..|. ..+++|++++.+ +|.+.++|++++++.|+
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 46789999988763 222 2234556655664 358999999884 78899999999988754
No 219
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=63.83 E-value=1.1e+02 Score=31.89 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=39.6
Q ss_pred HHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHh-Ccc
Q 012928 325 HSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-GAD 401 (453)
Q Consensus 325 deI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~-G~D 401 (453)
+.+.+. .|.+=||-+|+.- -.+++.+.+.|||+|+.|.| .|.+|+...+.++.. |.+
T Consensus 103 d~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 434444 6788888777753 23556677889999997653 477888888888874 553
No 220
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.31 E-value=13 Score=38.62 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=37.8
Q ss_pred EecCCCCCCHHHHHHHHHhCC--cEEEeecCCCChHHHHHHHHHHHH
Q 012928 105 CTIGPSTSSREMIWKLAEEGM--NVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 105 ~TiGPss~s~e~i~~Li~aGm--nvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+.+|...++.+.+.+|+++|+ |+.=|..+||.-+..+++|+.||+
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 345555567789999999966 999999999999998988888886
No 221
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=63.28 E-value=70 Score=32.11 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=57.4
Q ss_pred HHHHhhhh-cCCcEEEec------cccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeC
Q 012928 271 EDIKFGVD-NQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~-~gvd~I~lS------fV~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgR 338 (453)
+.+++.++ .|+++|.+. +.=+.++-.+ ++..++..+.++.||+.+- |.++++......+. +|++++-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45578888 999998763 2223333333 3444555567789999884 45566555555444 79999976
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
-...- .. -..+.+..-..|.+.+.|+++.
T Consensus 108 P~y~~---~~-~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYYP---FS-FEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCCC---CC-HHHHHHHHHHHHHhCCCCEEEE
Confidence 44311 11 1223333444455678898876
No 222
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=63.17 E-value=48 Score=33.61 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHH-HHHHHHhcCCCceEEEEec--ChhhhccHHHHHhh-cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA-SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~-v~~~L~~~~~~i~IIakIE--T~~gv~NldeI~~~-sDgImIgRGD 340 (453)
+.+++.++.|+|+|.+. +.-+.++-.+ ++...+..+.+++||+-+- |.++++.+....+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 45578889999998762 1223333333 3444555667788888772 22333333333333 6999997654
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 341 Lg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
+.. ..-+.+...-+. .|.+.+.|+++.
T Consensus 112 y~~-~~~~~i~~~f~~---va~~~~lpi~lY 138 (303)
T PRK03620 112 LTE-APQEGLAAHVEA---VCKSTDLGVIVY 138 (303)
T ss_pred CCC-CCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 431 111223333333 455668888765
No 223
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=63.06 E-value=46 Score=32.78 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=66.6
Q ss_pred HHHHhhhhcCCcEEEe---------------ccccCHHHHHHHHHHHHhcCC--CceEEEEecCh--------hhhccHH
Q 012928 271 EDIKFGVDNQVDFYAV---------------SFVKDAKVVHELKDYLKSCNA--DIHVIVKIESA--------DSIPNLH 325 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~l---------------SfV~sa~dv~~v~~~L~~~~~--~i~IIakIET~--------~gv~Nld 325 (453)
+.++...+.|+++|.+ ..+...+.+..++........ ++.|+|..++. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 4455667789999988 344445555566666655554 89999997664 3344444
Q ss_pred HHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCC-CchHHHHHHHHHHHhCccEE
Q 012928 326 SIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAV 403 (453)
Q Consensus 326 eI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~v 403 (453)
.-.++ +|++|+- +.. -.+.+.+.+++...|+.+. +..++. ++..| .-..|+..+
T Consensus 168 ay~~AGAD~v~v~--------~~~----~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~------l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVE--------GLK----DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAE------LAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeC--------CCC----CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHH------HHHCCCeEE
Confidence 44444 7999983 211 1245555566688998763 112221 45444 344588877
Q ss_pred Eec
Q 012928 404 MLS 406 (453)
Q Consensus 404 mLs 406 (453)
...
T Consensus 224 ~~~ 226 (243)
T cd00377 224 SYG 226 (243)
T ss_pred EEC
Confidence 763
No 224
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=63.00 E-value=1.1e+02 Score=31.15 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=74.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHH-cCC
Q 012928 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQK 366 (453)
Q Consensus 289 V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~-aGk 366 (453)
.+++++|.++++.+ +++||+++---- +...+++.++ +|.| | +.+-.-+ + ..++...+. .+.
T Consensus 51 ~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI-----D-aT~r~rP-~----~~~~~~iK~~~~~ 113 (283)
T cd04727 51 MADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI-----D-ESEVLTP-A----DEEHHIDKHKFKV 113 (283)
T ss_pred cCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-H----HHHHHHHHHHcCC
Confidence 35677777777655 788998764332 6666766666 7877 4 2222212 1 344444444 466
Q ss_pred CEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcCC
Q 012928 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (453)
Q Consensus 367 pvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (453)
|++. ..- .+.++-+++..|+|+|=-+.+--.| +-.|+|+-+++|-.+.....
T Consensus 114 l~MA-----------D~s---tleEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~ 165 (283)
T cd04727 114 PFVC-----------GAR---NLGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQ 165 (283)
T ss_pred cEEc-----------cCC---CHHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHh
Confidence 6553 222 3566889999999999877775555 67899999999998887543
No 225
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=62.91 E-value=1.6e+02 Score=31.95 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=64.9
Q ss_pred HHHHHhhhhcCCcEEEeccc--cCHHHHHHHHHH-H--HhcC---CCceEEEEecChhhhcc------------------
Q 012928 270 WEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDY-L--KSCN---ADIHVIVKIESADSIPN------------------ 323 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV--~sa~dv~~v~~~-L--~~~~---~~i~IIakIET~~gv~N------------------ 323 (453)
.+.++..++.|++.|..|.- -++..+ ..+.. + ...+ ....|++|+-+++-...
T Consensus 90 ~~~v~l~l~~~V~~veasa~~~~~p~~v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 90 WGLVDLLLRHGVRIVEASAFMQLTPALV-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHHHHHHHcCCCEEEeccccCCCcchh-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 45566678899998876622 122222 11110 1 0000 12478999877654433
Q ss_pred --HHHHHhh-----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHH------c--CCCEEEEechhhhhccCCCCchHH
Q 012928 324 --LHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS------M--QKPVIVATNMLESMIDHPTPTRAE 388 (453)
Q Consensus 324 --ldeI~~~-----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~------a--Gkpvi~aTqmLeSM~~~~~PtrAE 388 (453)
.+|-..+ +|.|.+. .|=|-+.|--........|++...+ + .+|||.| .++-|.
T Consensus 169 it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAA---------GGI~t~-- 236 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAA---------GGIGTP-- 236 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEe---------CCCCCH--
Confidence 1111111 5888777 7766665532233333334322222 2 3568876 445553
Q ss_pred HHHHHHHHHhCccEEEe
Q 012928 389 VSDIAIAVREGADAVML 405 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmL 405 (453)
.+++-++..|+|+|++
T Consensus 237 -~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 237 -EAAAAAFMLGADFIVT 252 (444)
T ss_pred -HHHHHHHHcCCcEEEe
Confidence 4577889999999986
No 226
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.59 E-value=11 Score=40.51 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=63.3
Q ss_pred EeCCCccccCCC-CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc-ccCCC
Q 012928 336 VARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE-TAHGK 413 (453)
Q Consensus 336 IgRGDLg~elg~-e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E-TA~G~ 413 (453)
+|.|+.-+.=|+ +-|+...-++++.|-..+|--|+| +--=++..-.+. .=+.|-++.++|| .++||.+ ...|+
T Consensus 274 LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITa--fYTVLveGDD~~-dPiaD~~RsILDG--HIvLsR~LA~~gh 348 (441)
T COG1157 274 LAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITA--FYTVLVEGDDMN-DPIADEVRSILDG--HIVLSRALAEAGH 348 (441)
T ss_pred HhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEE--EEEEEeecCCCC-Cchhhhhhhhccc--eEEeeHhHHhcCC
Confidence 344555444454 458888888888887777776654 222222333333 1288899999999 5999999 56999
Q ss_pred CHHHHHHHHHHHHHHHhcCCC
Q 012928 414 FPLKAVKVMHTVALRTESSLP 434 (453)
Q Consensus 414 yP~eaV~~m~~I~~~aE~~~~ 434 (453)
|| ||..+++|.+-+.+.+.
T Consensus 349 yP--aIdvl~SiSRvm~~i~~ 367 (441)
T COG1157 349 YP--AIDVLASISRVMPQIVS 367 (441)
T ss_pred CC--CcchHHHHHHHhhhcCC
Confidence 99 89999999888875543
No 227
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=62.00 E-value=1.6e+02 Score=28.55 Aligned_cols=142 Identities=16% Similarity=0.217 Sum_probs=74.5
Q ss_pred hHHHHHhhhhcCCcEEEec-------cccCHHHHHHHHHHHHhcCCCceEEEEecChhh------------hccHHHHHh
Q 012928 269 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lS-------fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g------------v~NldeI~~ 329 (453)
+.+++..|.+.|+|-|=+- ...|...++.+++ ..+++|.++|--..| .+.+....+
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~-----~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQARE-----AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHH-----HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHh-----hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 4567777778888877551 1223444444443 347889999976555 122222222
Q ss_pred h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 330 ~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
. +||+.+|-=+=.-++. ..+.++++.+|. |.|+.+- |..-..+...+ .+-..+..|+|.|+-||-
T Consensus 84 ~GadG~VfG~L~~dg~iD----~~~~~~Li~~a~--~~~~tFH------RAfD~~~d~~~--al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEID----EEALEELIEAAG--GMPVTFH------RAFDEVPDPEE--ALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp TT-SEEEE--BETTSSB-----HHHHHHHHHHHT--TSEEEE-------GGGGGSSTHHH--HHHHHHHHT-SEEEESTT
T ss_pred cCCCeeEEEeECCCCCcC----HHHHHHHHHhcC--CCeEEEe------CcHHHhCCHHH--HHHHHHhcCCCEEECCCC
Confidence 2 7999997311111111 234566776664 8887773 22333344433 234556679999998765
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcC
Q 012928 409 TAHGKFPLKAVKVMHTVALRTESS 432 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~~ 432 (453)
. .-..+.+..|++.+..+...
T Consensus 150 ~---~~a~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 150 A---PTALEGIENLKELVEQAKGR 170 (201)
T ss_dssp S---SSTTTCHHHHHHHHHHHTTS
T ss_pred C---CCHHHHHHHHHHHHHHcCCC
Confidence 4 22336677888888877654
No 228
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.95 E-value=1.8e+02 Score=29.35 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=84.7
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEec-cccC-----HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCE--E
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVS-FVKD-----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDG--A 334 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lS-fV~s-----a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDg--I 334 (453)
+|..++..| +...+.|++.|=+. |+.. ..|-.++-..+.+. ....+.+..-+.++++.. ++. .|. +
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie~A---~~~g~~~v~i 98 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLEAA---LAAGADEVAV 98 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHHHH---HHcCCCEEEE
Confidence 466676555 44467899998663 5431 11222322333332 234444444344444332 222 453 4
Q ss_pred EEeCCCcc----ccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCC---chHHHHHH-HHHHHhCccEEEec
Q 012928 335 MVARGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP---TRAEVSDI-AIAVREGADAVMLS 406 (453)
Q Consensus 335 mIgRGDLg----~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~P---trAEv~Dv-~nav~~G~D~vmLs 406 (453)
++.-.|+- .....++.....+.+++.++++|..+..+=.+ ....+.- +.+.+.++ -.+...|+|.+.|
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l- 174 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADVAERLFALGCYEISL- 174 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe-
Confidence 44433431 11222345556688999999999987421000 0011222 22334443 4556689999998
Q ss_pred CcccCCCCHHHHHHHHHHHHHH
Q 012928 407 GETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.+|.=-..|.+.-++++.+..+
T Consensus 175 ~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 175 GDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred ccccCccCHHHHHHHHHHHHHh
Confidence 4888888999999998888764
No 229
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=61.63 E-value=12 Score=37.65 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh--hccHHHHHhh-cCEEEEe
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 337 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g--v~NldeI~~~-sDgImIg 337 (453)
+..+.+..+.+.|+|+|.+..+ ++++++++.+.+. ..+++ |=.-| .+|+.++++. +|+|-+|
T Consensus 186 ~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi----~AsGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 186 ESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLL----EASGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcE----EEECCCCHHHHHHHHHcCCCEEEeC
Confidence 4556777788999999999875 5677777666552 23333 33334 4788888887 8999984
No 230
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.59 E-value=14 Score=39.50 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=41.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+-..-+.+|+.-.+.+.++.|+++|+++.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34566778887667789999999999999999999988877777777775
No 231
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=61.59 E-value=1.2e+02 Score=31.81 Aligned_cols=151 Identities=11% Similarity=0.156 Sum_probs=81.4
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEe-------ccccCHHHHHHHHHHHHhcC----CCceEEEEe--cChhhhccHHHHHh
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAV-------SFVKDAKVVHELKDYLKSCN----ADIHVIVKI--ESADSIPNLHSIIS 329 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~l-------SfV~sa~dv~~v~~~L~~~~----~~i~IIakI--ET~~gv~NldeI~~ 329 (453)
.|+.+..+.+ ...+..|+|+|.. +|..-.+-+..+++.+++.+ ....+++.| .+.+.+++.+...+
T Consensus 142 gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~ 221 (367)
T cd08205 142 GLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVE 221 (367)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHH
Confidence 3455555444 4556789999832 44555556666666665544 556677777 44567777777666
Q ss_pred h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 330 ~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
+ +|++|+.+.- .|+.. +..+.+ ..+.|+...-.+.-.|..++.--..-..-.--+-+.|+|.++-.
T Consensus 222 ~Gad~vmv~~~~----~g~~~----~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~-- 288 (367)
T cd08205 222 AGANALLINPNL----VGLDA----LRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFP-- 288 (367)
T ss_pred cCCCEEEEeccc----ccccH----HHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccC--
Confidence 6 7999997542 12222 222222 23677665544444444333211111222223445688888775
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 012928 409 TAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~ 428 (453)
|..|+|+.. .+...++++.
T Consensus 289 ~~~gk~~~~-~~~~~~la~~ 307 (367)
T cd08205 289 GPGGRFPFS-REECLAIARA 307 (367)
T ss_pred CCccCcCCC-HHHHHHHHHH
Confidence 457776533 3333344443
No 232
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.58 E-value=49 Score=33.12 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=55.0
Q ss_pred HHHHhhhhcCCcEEEecc------ccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf------V~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+.= .-+.++-.+ ++...+....++.|++-+= |.++++.+....+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 455788889999987531 112233233 3334444556788888774 44555555544443 799999765
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+.. .+-+.+...-+.| |.+.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~i---a~~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAI---AEATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 5421 1213344444444 44557888875
No 233
>PRK08417 dihydroorotase; Provisional
Probab=61.51 E-value=2.1e+02 Score=29.86 Aligned_cols=127 Identities=10% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCCCHhhHHHH-HhhhhcCCcEEEe-----ccccCHHHHHHHHHHHHhc-CCCceEEEEecChhhhccHHHHHhh-cCE
Q 012928 262 LPSITDKDWEDI-KFGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIISA-SDG 333 (453)
Q Consensus 262 lp~ltekD~~DI-~~a~~~gvd~I~l-----SfV~sa~dv~~v~~~L~~~-~~~i~IIakIET~~gv~NldeI~~~-sDg 333 (453)
-|..+.+|.+.. +.|+..|+..|.. |.+.+++.+....+..++. ..-+..+.-....+.+..+++..+. +++
T Consensus 41 ~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~ 120 (386)
T PRK08417 41 NDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAKA 120 (386)
T ss_pred CCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCEE
Confidence 344454444333 5567788877654 3344455555554444321 1122233323344445555555433 455
Q ss_pred EEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhh-----hc---------cCCCCchHHHHHHHHHHH
Q 012928 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES-----MI---------DHPTPTRAEVSDIAIAVR 397 (453)
Q Consensus 334 ImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeS-----M~---------~~~~PtrAEv~Dv~nav~ 397 (453)
+.+. + + .-.....++++.+++.|+|+.+-.+--+- |. ...+|..+|...+.+++.
T Consensus 121 ~k~~-~------~--~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~ 189 (386)
T PRK08417 121 LELS-S------D--LDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKE 189 (386)
T ss_pred EECC-C------C--CCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHH
Confidence 5431 1 1 12345677778899999999887654111 11 123588888777666554
No 234
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.05 E-value=12 Score=40.91 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.8
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 105 ~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+.+|..-++.+.++.|+++|+++.=++.+||......+.|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467876667899999999999999999999988777667777765
No 235
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=61.00 E-value=6.3 Score=28.47 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=19.5
Q ss_pred CcEEEeecC-CCChHHHHHHHHHHH
Q 012928 125 MNVARLNMS-HGDHASHQKTIDLVK 148 (453)
Q Consensus 125 mnvaRiNfS-Hg~~e~~~~~I~~iR 148 (453)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678999998 999998888887763
No 236
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=60.94 E-value=1.5e+02 Score=28.50 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=58.2
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh-----------------hccHHHHHh---
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-----------------IPNLHSIIS--- 329 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g-----------------v~NldeI~~--- 329 (453)
.+|++...+.|++.|.+.- ...++...++++.+..+.+. |+.-+....+ -.+..+.++
T Consensus 86 ~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 86 LEDAKKLLSLGADKVSINT-AALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred HHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 4455555677999887762 22333444555555544432 3333332221 112223322
Q ss_pred -h-cCEEEEeCCCcccc---CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEE
Q 012928 330 -A-SDGAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAV 403 (453)
Q Consensus 330 -~-sDgImIgRGDLg~e---lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~v 403 (453)
. +|.+.+-- ...+ -|+ .+ +.+-+.++..+.|++.+ .+.-+. .|+.. ....|+|++
T Consensus 164 ~~G~d~i~i~~--i~~~g~~~g~-~~----~~~~~i~~~~~ipvia~---------GGi~s~---~di~~~l~~~gadgV 224 (232)
T TIGR03572 164 QLGAGEILLNS--IDRDGTMKGY-DL----ELIKTVSDAVSIPVIAL---------GGAGSL---DDLVEVALEAGASAV 224 (232)
T ss_pred HcCCCEEEEeC--CCccCCcCCC-CH----HHHHHHHhhCCCCEEEE---------CCCCCH---HHHHHHHHHcCCCEE
Confidence 2 57777752 2221 121 22 22223344568999885 334444 44445 345699999
Q ss_pred Eec
Q 012928 404 MLS 406 (453)
Q Consensus 404 mLs 406 (453)
++.
T Consensus 225 ~vg 227 (232)
T TIGR03572 225 AAA 227 (232)
T ss_pred EEe
Confidence 986
No 237
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=60.61 E-value=65 Score=32.19 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 292 a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+.+..++++.++. .+.+++-+-....++-+. +.+|.+-||-+++.- ..+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVA---EYADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHH---hhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45566677776554 566888777777665554 457999999776642 33778888999999997
Q ss_pred echhhhhccCCCCchHHHHHHHHHHH-hCccEEEec
Q 012928 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (453)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 406 (453)
|.| .++-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~--------~~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGM--------GNTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCC--------CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 543 346778887777775 577556653
No 238
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=60.58 E-value=34 Score=33.98 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=51.5
Q ss_pred cCEEEEeCCCcc--ccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 331 SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 331 sDgImIgRGDLg--~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
+||+++. |--| ..+..++-..+.+.+.+.+. ...|+++. .....++.-+.-.-.+...|+|++|+..-
T Consensus 35 v~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~g--------v~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 35 TDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAG--------TGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred CCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEec--------cCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 7888875 3222 22222333333333333331 23455553 12223333355566778889999999865
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 012928 409 TAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
.-...-+-+.+++.+.|+..+..
T Consensus 105 ~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 105 YYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCC
Confidence 54444567888999999886543
No 239
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=60.32 E-value=49 Score=32.86 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHhhhhcCCcEEEecc------ccCHHHHHHHH-HHHHhcCCCceEEEEecC---hhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHELK-DYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf------V~sa~dv~~v~-~~L~~~~~~i~IIakIET---~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+.= --+.++-.++- ...+..+.++.|++-+-. .++++.+....+. +|++|+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 556788899999987641 12233333333 333444567888888753 3555555544444 799999865
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.... .+-+.+...-+.|.+ +.+.|+++.
T Consensus 105 ~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 4321 111344444455544 468898865
No 240
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=60.20 E-value=2.1e+02 Score=29.39 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=66.6
Q ss_pred hhHHHHH-hhhhcCCcEEEeccc--c-CHH----HH-HHHHHHHHhc--CCCceEEEEecChhhhccHHHHHhh-----c
Q 012928 268 KDWEDIK-FGVDNQVDFYAVSFV--K-DAK----VV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----S 331 (453)
Q Consensus 268 kD~~DI~-~a~~~gvd~I~lSfV--~-sa~----dv-~~v~~~L~~~--~~~i~IIakIET~~gv~NldeI~~~-----s 331 (453)
.+..++. .+.+.|+|+|-+.+- . ++. ++ ..+.+.+... ..+++|++|+- + .+.++.++++. +
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 3444443 334568898866442 1 111 11 1122333221 23589999984 3 24466666654 6
Q ss_pred CEEEEe-CC-----Ccc-------ccC-CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH
Q 012928 332 DGAMVA-RG-----DLG-------AEL-PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR 397 (453)
Q Consensus 332 DgImIg-RG-----DLg-------~el-g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (453)
|||.+. |. |+- .-+ |....+.+.+.+-+.......|++-. .+.-+ ..|+..++.
T Consensus 190 dgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~---------GGI~s---~~Da~e~l~ 257 (325)
T cd04739 190 DGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAAS---------GGVHD---AEDVVKYLL 257 (325)
T ss_pred CeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEE---------CCCCC---HHHHHHHHH
Confidence 877663 32 210 000 11223344444444445557776653 33444 567889999
Q ss_pred hCccEEEecC
Q 012928 398 EGADAVMLSG 407 (453)
Q Consensus 398 ~G~D~vmLs~ 407 (453)
.|||+|++..
T Consensus 258 aGA~~Vqv~t 267 (325)
T cd04739 258 AGADVVMTTS 267 (325)
T ss_pred cCCCeeEEeh
Confidence 9999999973
No 241
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=60.12 E-value=1.3e+02 Score=31.88 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecC
Q 012928 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (453)
Q Consensus 350 v~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (453)
-+..-+++++.++++ .+|+++ .-.|.-.++.+++. +...|+|++.|.+
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~v----------KLsPn~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWA----------KMTPNITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEE----------EeCCChhhHHHHHHHHHHhCCCEEEEec
Confidence 367777888888775 688887 23355556777777 6668899998854
No 242
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=60.01 E-value=2e+02 Score=29.96 Aligned_cols=82 Identities=26% Similarity=0.339 Sum_probs=57.5
Q ss_pred EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 333 gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
.+|--+...|.-.|+. =++..+.+++. ...||++. .+.-+ -+|++.+++.|+|+++++.--+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivd---------AGIg~---~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVD---------AGVGT---ASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcceeccC
Confidence 4444345556556654 34444555444 57898884 45555 568999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012928 413 KFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE 430 (453)
+.|+.--+.|+.-+..-.
T Consensus 285 ~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999987777776665443
No 243
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=59.83 E-value=1.5e+02 Score=30.45 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred ccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHH-c
Q 012928 287 SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-M 364 (453)
Q Consensus 287 SfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~-a 364 (453)
.=..++++|.++++.+ +++||+++=--- +...+.+.+. +|.| | ..+..-+ + ...++..+. .
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP----a-de~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP----A-DWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc----H-HHHHHHHHHHc
Confidence 3446777777777665 789998764322 4555555544 7877 4 2222212 1 333333333 4
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhcC
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (453)
+.|++.- .- .+.+.-+++..|+|.|--++|-=.| +-+|||+-|+.+-.+....
T Consensus 114 ~vpfmad-----------~~---~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCG-----------AR---DLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEcc-----------CC---CHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 7776541 22 3566789999999999998886666 6899999999998888754
No 244
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.70 E-value=62 Score=32.94 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=57.6
Q ss_pred HHHHhhhhcCCcEEEe------ccccCHHHHHHH-HHHHHhcCCCceEEEEe---cChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAV------SFVKDAKVVHEL-KDYLKSCNADIHVIVKI---ESADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~l------SfV~sa~dv~~v-~~~L~~~~~~i~IIakI---ET~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.++|.++.|+|+|.+ ++.-|.++-.++ +...+..+.+++||+-+ =|.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4457888999998876 233344454444 44445567788899876 345666655544444 799998543
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+--- +-+.+...-+.| |.+.+.|+|+.
T Consensus 109 yY~k~-~~~gl~~hf~~i---a~a~~lPvilY 136 (299)
T COG0329 109 YYNKP-SQEGLYAHFKAI---AEAVDLPVILY 136 (299)
T ss_pred CCcCC-ChHHHHHHHHHH---HHhcCCCEEEE
Confidence 33211 112344444444 55558998886
No 245
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=59.66 E-value=88 Score=33.06 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCC-CCHHHHHHHHHHHHHHcC
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQ 365 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~-e~v~~aqk~Ii~~c~~aG 365 (453)
+-+++..+++.. +.+|++| |+.+.++...+ +|+|.++-.- +..+.- +.-..+..++..+. .-.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av-~~~ 283 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAV-DKR 283 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHh-CCC
Confidence 345666666544 4678888 45544433332 6898886322 223211 11112222222221 123
Q ss_pred CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 366 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 366 kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
+|+|. ..+.-+ -.|+..++..|+|+||+..-
T Consensus 284 i~vi~---------dGGIr~---g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 284 VPIVF---------DSGVRR---GQHVFKALASGADLVALGRP 314 (367)
T ss_pred CcEEe---------eCCcCC---HHHHHHHHHcCCCEEEEcHH
Confidence 67776 333333 67899999999999998655
No 246
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=59.44 E-value=63 Score=28.25 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
...+++.|.+.+..+.+.+.-+.. .-++++++++-.|.|+.+-.+ ...+..+-+.|+++++|.|.+
T Consensus 58 a~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 58 AEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 456778888888888776643333 557788888889988876333 456677888999999998875
No 247
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=59.40 E-value=17 Score=39.80 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=41.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+-..=+.+|+.-+..|..+.|+++|+|+.=+..+||...+..++|+.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455678988788999999999999999999999988776677777775
No 248
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.32 E-value=45 Score=32.69 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=64.8
Q ss_pred EEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCC--------CccccCCCC--C
Q 012928 284 YAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG--------DLGAELPIE--D 349 (453)
Q Consensus 284 I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRG--------DLg~elg~e--~ 349 (453)
|.+=...++++...+.+.|-+.|-.. +=.-.-|+.+++.++++.+. .+.++||-| +.+++.|.+ -
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~-iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARV-FEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 33333456666666655555443221 11234566677766666532 234666654 122222221 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
-|..-..+++.|+++|.|.+= +.-| .+++..+...|+|.+=|--..+.|
T Consensus 97 sP~~~~~v~~~~~~~~i~~iP-----------G~~T---psEi~~A~~~Ga~~vKlFPA~~~G 145 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKVPYSP-----------GCGS---LSEIGYAEELGCEIVKLFPGSVYG 145 (222)
T ss_pred CCCCCHHHHHHHHHcCCCEeC-----------CCCC---HHHHHHHHHCCCCEEEECcccccC
Confidence 233457899999999999773 2233 455789999999999886433444
No 249
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=59.28 E-value=23 Score=36.06 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=48.4
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEe
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIg 337 (453)
..+++..+++.|+|.|.+=. -+++++.++.+.+.+.+.++ ++|-.-|+ +|+.++++. .|.|.+|
T Consensus 198 tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 45666777899999999976 48999999888876544442 46666665 788888877 8998886
No 250
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.22 E-value=37 Score=34.49 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=50.3
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..+++..+++.|+|.|.+=.. +++++.++.+++.+.+.+.. .+||-.-|+ +|+.++++. +|.|.+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456677788999999999775 79999999998877652212 246666665 677888777 89999874
No 251
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=59.19 E-value=1.5e+02 Score=31.08 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=69.7
Q ss_pred CCCCCCHhhHHHHHhhhhcCCcEEEeccccCH---------------HHHHHHHHHHHhcCCCceEEEEec------C-h
Q 012928 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIE------S-A 318 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa---------------~dv~~v~~~L~~~~~~i~IIakIE------T-~ 318 (453)
++-.+|.+|..--+.+-+.|+|.|.+. .+. +++..--+.+.+......+++=++ + .
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVG--DSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e 113 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVG--DSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTD 113 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEEC--CcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHH
Confidence 345567777766666666788887764 222 222222222333334555565443 3 3
Q ss_pred hhhccHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhhhcc---CCC-CchHH
Q 012928 319 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMID---HPT-PTRAE 388 (453)
Q Consensus 319 ~gv~NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeSM~~---~~~-PtrAE 388 (453)
++++|...+++. +|+|=+--|. ..+-.++++.-++|+||+ +--|-...|-. .+. ...++
T Consensus 114 ~av~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~ 182 (332)
T PLN02424 114 QAVESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAV 182 (332)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHH
Confidence 778888888753 6777664331 122344444457888877 54444444321 221 12222
Q ss_pred --HHHHHHHHHhCccEEEe
Q 012928 389 --VSDIAIAVREGADAVML 405 (453)
Q Consensus 389 --v~Dv~nav~~G~D~vmL 405 (453)
+.|.-..-..|+++++|
T Consensus 183 ~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 183 KVVETALALQEAGCFAVVL 201 (332)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 44444455678888777
No 252
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=58.93 E-value=1e+02 Score=30.54 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 292 a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.++..++.+|.++. .+..++-.=..++++-++++ -.+.+=||-+||. .+ .+++.+.+.|||+|++
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvIlS 119 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEEE
T ss_pred HHHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcEEEE
Confidence 34455555555543 33344433333444333222 2788888988886 23 3566777899999997
Q ss_pred echhhhhccCCCCchHHHHHHHHHH-HhCccEEEecCcccCCCCHH
Q 012928 372 TNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL 416 (453)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~ 416 (453)
|. .-|.+|+.++.+.+ ..|.+-+.|-.= .-.||.
T Consensus 120 TG---------~stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 120 TG---------MSTLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp -T---------T--HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred CC---------CCCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 64 67788999999988 555555554322 445663
No 253
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=58.92 E-value=1.8e+02 Score=28.30 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=73.7
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCcc------c
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLG------A 343 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg------~ 343 (453)
+.|++.++|+|=++. +-..+..+++.+. ....|=. +..+++|..++ +|.|.+|+--=. .
T Consensus 75 dlA~~~~AdGVHlGq--~D~~~~~ar~~~~---~~~iIG~------S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~ 143 (211)
T COG0352 75 DLALAVGADGVHLGQ--DDMPLAEARELLG---PGLIIGL------STHDLEEALEAEELGADYVGLGPIFPTSTKPDAP 143 (211)
T ss_pred HHHHhCCCCEEEcCC--cccchHHHHHhcC---CCCEEEe------ecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCC
Confidence 445678899887773 3334445555552 2322222 33345555443 799999863211 1
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
-.|++.+ -+......+|++.- -.-.|.+ +-.....|+|+|-+.+......-|-.+++-+.
T Consensus 144 ~~G~~~l-------~~~~~~~~iP~vAI--------GGi~~~n-----v~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~ 203 (211)
T COG0352 144 PLGLEGL-------REIRELVNIPVVAI--------GGINLEN-----VPEVLEAGADGVAVVSAITSAADPAAAAKALR 203 (211)
T ss_pred ccCHHHH-------HHHHHhCCCCEEEE--------cCCCHHH-----HHHHHHhCCCeEEehhHhhcCCCHHHHHHHHH
Confidence 2222211 12233334886653 3334444 33678889999998888777899999999998
Q ss_pred HHHHHH
Q 012928 424 TVALRT 429 (453)
Q Consensus 424 ~I~~~a 429 (453)
+...+.
T Consensus 204 ~~~~~~ 209 (211)
T COG0352 204 NALEDE 209 (211)
T ss_pred HHHHhh
Confidence 887643
No 254
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=58.69 E-value=1.1e+02 Score=31.11 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhhhccCC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHP 382 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeSM~~~~ 382 (453)
.++|...+....-++.+..-+.. .+.+|+.. -.+|+++=...-+++++.|+++|.+|= .-..-=+.....
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~Dg----S~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~- 151 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDA----SHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAE- 151 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccc-
Confidence 36888888887755555544444 57899963 346776666777999999999999862 110000110000
Q ss_pred CCchHHHHHHHHHHH-hCccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 383 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
.-...+..+...++. -|+|++-.|-.|+.|.| |---.+.|++|..+.
T Consensus 152 ~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 152 GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred cccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 000112445556775 59999999999999999 666677788886654
No 255
>PRK06801 hypothetical protein; Provisional
Probab=58.65 E-value=1.6e+02 Score=29.93 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccC----
Q 012928 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH---- 381 (453)
Q Consensus 307 ~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~---- 381 (453)
..++|........-++.+++-+.. .+.||+.--+ +++++-...-+++.+.|+.+|.+|=..=..+-.....
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~----l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGST----LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCC----CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 467788888777666666655554 6899995333 4666666677899999999999873321112111100
Q ss_pred --CCCchHHHHHHHHHH-HhCccEEEecCcccCCCCHH---HHHHHHHHHHHHH
Q 012928 382 --PTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVALRT 429 (453)
Q Consensus 382 --~~PtrAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~---eaV~~m~~I~~~a 429 (453)
..-......++..++ ..|+|++-++--|+.|+|+- .-...+..|....
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~ 202 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT 202 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc
Confidence 000011234556777 68999999999999999954 3466677775543
No 256
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=58.47 E-value=31 Score=34.59 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=46.9
Q ss_pred hcCCcEEEeccccC-----HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeC-----CCccccCCC
Q 012928 278 DNQVDFYAVSFVKD-----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-----GDLGAELPI 347 (453)
Q Consensus 278 ~~gvd~I~lSfV~s-----a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgR-----GDLg~elg~ 347 (453)
..++|+|.+|=..+ .+++.++++.+ . ++|+ |=|---.+|+.++++.+||++||. |+..-.+..
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~---~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~ 242 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAV---P--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDP 242 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcC---C--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCH
Confidence 56899999987654 34444444433 2 5555 556666799999999999999994 444545554
Q ss_pred CCHHHHHH
Q 012928 348 EDVPLLQE 355 (453)
Q Consensus 348 e~v~~aqk 355 (453)
+++....+
T Consensus 243 ~Rv~~fm~ 250 (254)
T PF03437_consen 243 ERVRRFME 250 (254)
T ss_pred HHHHHHHH
Confidence 55544443
No 257
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=58.44 E-value=35 Score=28.18 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=39.2
Q ss_pred cEEEeccc-ccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEecccceeec
Q 012928 199 DTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNV 255 (453)
Q Consensus 199 ~~I~v~~~-~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~-------ngG~L~s~KgVnl 255 (453)
..+.+..+ ..+..+.+|+.|-+|. ++|+|.++.++.+...+. +=|.++.+.-||+
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 44555555 7788999999999987 889999999998887764 3455555556665
No 258
>PRK15452 putative protease; Provisional
Probab=58.37 E-value=62 Score=34.99 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=55.1
Q ss_pred eEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCH-HHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH
Q 012928 310 HVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV-PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (453)
Q Consensus 310 ~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v-~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE 388 (453)
.+.|..-|.++++. .|..-+|.|.+|-..++.-...... ..-.++.+..|+++|+.++++++ ..|...|
T Consensus 5 eLlapag~~e~l~a--Ai~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n--------~i~~e~e 74 (443)
T PRK15452 5 ELLSPAGTLKNMRY--AFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVN--------IAPHNAK 74 (443)
T ss_pred EEEEECCCHHHHHH--HHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEec--------CcCCHHH
Confidence 46666666655531 2222389999998877763321100 13356778899999999999855 3444555
Q ss_pred HHHH----HHHHHhCccEEEec
Q 012928 389 VSDI----AIAVREGADAVMLS 406 (453)
Q Consensus 389 v~Dv----~nav~~G~D~vmLs 406 (453)
.... ..+...|+|+++.+
T Consensus 75 l~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 75 LKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHHhCCCCEEEEc
Confidence 4444 33445699999986
No 259
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=58.33 E-value=2.3e+02 Score=30.19 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=69.9
Q ss_pred ccCCCCCCHhhH-HHHHhhhhcCCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChh-hhccHHHHHhh-cCEE
Q 012928 259 SANLPSITDKDW-EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISA-SDGA 334 (453)
Q Consensus 259 ~~~lp~ltekD~-~DI~~a~~~gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~-gv~NldeI~~~-sDgI 334 (453)
.+-+..++..+. +.++.+++.|+++|-..+.. +......++++.+..+ ...++.-+.... +-..++..+++ +|++
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdgV 85 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGADIV 85 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCCCEE
Confidence 334445555555 44456688999999653211 2334555555554433 334553322221 22355555554 7888
Q ss_pred EE-eCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 335 MV-ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 335 mI-gRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.+ +-.| . ...+++++.|+++|.++++-. .+ .+|. +..+..+...|+|.+.+.
T Consensus 86 ~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-------~s-~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 86 CILGLAD--------D--STIEDAVRAARKYGVRLMADL-------IN-VPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred EEecCCC--------h--HHHHHHHHHHHHcCCEEEEEe-------cC-CCCH--HHHHHHHHhcCCCEEEEE
Confidence 86 3222 0 113678889999999988620 01 1232 233456677899999765
No 260
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=58.10 E-value=2e+02 Score=29.46 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=17.4
Q ss_pred CCCHhhHHHH--------HhhhhcCCcEEEec
Q 012928 264 SITDKDWEDI--------KFGVDNQVDFYAVS 287 (453)
Q Consensus 264 ~ltekD~~DI--------~~a~~~gvd~I~lS 287 (453)
.+|+.|++.+ +.+.+.|+|+|=+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5788888776 23467899999664
No 261
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=58.07 E-value=2.1e+02 Score=28.71 Aligned_cols=141 Identities=9% Similarity=0.101 Sum_probs=80.7
Q ss_pred hHHHHHhhhhcCCcEEEe-------ccccCHHHHHHHHHHHHhcCCCceEEEEecChhh------------hccHHHHHh
Q 012928 269 DWEDIKFGVDNQVDFYAV-------SFVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~l-------SfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g------------v~NldeI~~ 329 (453)
+.++...|.+.|+|=|=+ ....|..-+..+++++ +++|.++|=-..| .+.+....+
T Consensus 10 s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 10 SMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERV-----TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-----CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456667777778876644 1223455555555433 5778888833322 122222222
Q ss_pred h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 330 ~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
. +||+.+|-=+=--.+. ....++++..| .+.|+.+. |..--.+.+ ...+-..+..|+|.|+-||-
T Consensus 85 ~GadGvV~G~L~~dg~vD----~~~~~~Li~~a--~~~~vTFH------RAfD~~~d~--~~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHVD----MPRMRKIMAAA--GPLAVTFH------RAFDMCANP--LNALKQLADLGVARILTSGQ 150 (248)
T ss_pred cCCCEEEEeeECCCCCcC----HHHHHHHHHHh--cCCceEEe------chhhccCCH--HHHHHHHHHcCCCEEECCCC
Confidence 2 7999997322111111 12446677776 47787663 112222322 23345567779999999877
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhc
Q 012928 409 TAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
.+. ..+.+..++++...+..
T Consensus 151 ~~~---a~~g~~~L~~lv~~a~~ 170 (248)
T PRK11572 151 QQD---AEQGLSLIMELIAASDG 170 (248)
T ss_pred CCC---HHHHHHHHHHHHHhcCC
Confidence 543 77888899988887664
No 262
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=57.73 E-value=1.3e+02 Score=31.24 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=73.6
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEE-Eech--hhhhccCCC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNM--LESMIDHPT 383 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~-aTqm--LeSM~~~~~ 383 (453)
.++|...+....-++.+.+-+.. .+.+|+..-. +++++=...-+++++.|++.|..|=- -..+ .|--.....
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~----lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~ 160 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSH----LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEH 160 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcc
Confidence 57788888877665555544444 5799997443 56666667789999999999988620 0000 000000000
Q ss_pred CchHHHHHHHHHHH-hCccEEEecCcccCCCCHH--------HHHHHHHHHHHHH
Q 012928 384 PTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 429 (453)
Q Consensus 384 PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP~--------eaV~~m~~I~~~a 429 (453)
-......+...++. -|+|++-.+--|+.|.|+- --...+++|-...
T Consensus 161 ~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 161 HTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred cccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 00112344556665 5999999999999999963 3456677766554
No 263
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=57.51 E-value=2.4e+02 Score=29.89 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=72.9
Q ss_pred hhhcCCcEEEec---cccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh--cCEEEEeCCCccc-------
Q 012928 276 GVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA------- 343 (453)
Q Consensus 276 a~~~gvd~I~lS---fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--sDgImIgRGDLg~------- 343 (453)
.++.|.+.+..+ ...+++++.++-+.|.+.....+|++|+=.....+.+..+++. +|+|.|.-++=+.
T Consensus 179 ~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~ 258 (392)
T cd02808 179 GIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTF 258 (392)
T ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccc
Confidence 355677766542 3467778877777777766557888887544233344444433 6999997654322
Q ss_pred --cCCCCCHHHHHHHHHHHHHHc----CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 344 --ELPIEDVPLLQEDIIRRCRSM----QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 344 --elg~e~v~~aqk~Ii~~c~~a----Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
+.|++ ...+..++..++.+. ..|++.+ .+.-+ -.|++.++..|||+|.+..
T Consensus 259 ~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~vias---------GGI~~---g~Dv~kalaLGAd~V~ig~ 315 (392)
T cd02808 259 IDHVGLP-TELGLARAHQALVKNGLRDRVSLIAS---------GGLRT---GADVAKALALGADAVGIGT 315 (392)
T ss_pred cccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEE---------CCCCC---HHHHHHHHHcCCCeeeech
Confidence 22332 224445555555544 3566654 33333 5689999999999998753
No 264
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.46 E-value=30 Score=35.33 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=48.3
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
.++...+++.|+|.|.+=.. ++++++++.+.++..+.++ +||-.-|+ +|+.+.++. +|.|.+|.
T Consensus 209 l~ea~eal~~gaDiI~LDnm-~~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLDEVLAEGAELVLLDNF-PVWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 45666678999999999875 4888888777766555553 56666665 788888888 89999874
No 265
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=57.30 E-value=2.2e+02 Score=30.02 Aligned_cols=87 Identities=7% Similarity=0.106 Sum_probs=54.6
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh-----------ccHHHHHhh-cCEEEEeCC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI-----------PNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv-----------~NldeI~~~-sDgImIgRG 339 (453)
.++.+.+.|+|.|++++ ..++.+......++.+|.|+-....+ -..++-+.. +|++.+-
T Consensus 96 ~i~~a~~~g~dAv~~~~-------G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t-- 166 (348)
T PRK09250 96 IVKLAIEAGCNAVASTL-------GVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT-- 166 (348)
T ss_pred HHHHHHhcCCCEEEeCH-------HHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE--
Confidence 45677888999999873 44555444444567899998775444 234554544 6655442
Q ss_pred CccccCCC---CCHHHHHHHHHHHHHHcCCCEEE
Q 012928 340 DLGAELPI---EDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 340 DLg~elg~---e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
+-+|- .+...-..++...|++.|.|++.
T Consensus 167 ---vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 167 ---IYFGSEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred ---EecCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 11222 12333457889999999999775
No 266
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=56.88 E-value=68 Score=32.62 Aligned_cols=112 Identities=16% Similarity=0.301 Sum_probs=68.7
Q ss_pred hhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHH
Q 012928 276 GVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQE 355 (453)
Q Consensus 276 a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk 355 (453)
++..|+|..-+ |.+..+ ..-++.| -.+..|-.-.-...+++-++..+.-.++++||+| ||-+ +.+....+
T Consensus 53 a~~~GaDL~Hi-FCe~~A-a~vIKsY----sPdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i~ 122 (306)
T KOG3974|consen 53 ALRVGADLSHI-FCEPEA-AVVIKSY----SPDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEIA 122 (306)
T ss_pred HHHhccceeee-eechhH-HHHHhhc----CCceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHHH
Confidence 34567775322 333221 1123333 3444444444445578878888888999999987 4432 45667778
Q ss_pred HHHHHHHHcCCCEEE-------EechhhhhccCC-----CCchHHHHHHHHHHH
Q 012928 356 DIIRRCRSMQKPVIV-------ATNMLESMIDHP-----TPTRAEVSDIAIAVR 397 (453)
Q Consensus 356 ~Ii~~c~~aGkpvi~-------aTqmLeSM~~~~-----~PtrAEv~Dv~nav~ 397 (453)
.|++-++..++|+.+ .+|-.|-|+..- .|.--|....+.+++
T Consensus 123 ~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 123 KILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 999999999999654 456555444422 566666666666654
No 267
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=56.83 E-value=22 Score=34.12 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhh
Q 012928 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153 (453)
Q Consensus 112 ~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~ 153 (453)
...+.|.+|.++|++.+||.+-.-+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999997554
No 268
>PLN02417 dihydrodipicolinate synthase
Probab=56.48 E-value=59 Score=32.55 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=54.7
Q ss_pred HHHHhhhhcCCcEEEecc------ccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf------V~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+.= .-+.++-.+ ++...+..+.+++||+-+= |.++++....-.+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 455788899999987631 122333333 3334455566788998874 55666665554444 799999876
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.... .+-+.+...-+.+.+ +. |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~----~~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLD----MG-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHh----hC-CEEEE
Confidence 5432 122334444444443 23 87765
No 269
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=56.25 E-value=1.5e+02 Score=29.75 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHhhhhcC-CcEEEec------cccCHHHHHHH-HHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeC
Q 012928 271 EDIKFGVDNQ-VDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~~g-vd~I~lS------fV~sa~dv~~v-~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgR 338 (453)
+.+++.++.| +|+|.+. +.-+.++-.++ +...+..+.+++||+.+- |.++++......+. +|++|+.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5567888999 9998765 33344444444 344555566788999885 44555544443333 79999975
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
-.... ..-+++...-+.+ |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 105 PFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 43211 1112333333333 3444 6787764
No 270
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=56.22 E-value=1e+02 Score=31.43 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHhhhhcCCcEEEe------------------ccccCHHHHHHHHHHHHh-cCCCceEEEEecCh-------hhhccH
Q 012928 271 EDIKFGVDNQVDFYAV------------------SFVKDAKVVHELKDYLKS-CNADIHVIVKIESA-------DSIPNL 324 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~l------------------SfV~sa~dv~~v~~~L~~-~~~~i~IIakIET~-------~gv~Nl 324 (453)
+-++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..+.. ++++..
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra 175 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRA 175 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHH
Confidence 3345556788888877 222333334445554443 35679999997764 444444
Q ss_pred HHHHhh-cCEEEEe
Q 012928 325 HSIISA-SDGAMVA 337 (453)
Q Consensus 325 deI~~~-sDgImIg 337 (453)
..-.++ +|++|+-
T Consensus 176 ~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 176 EAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHcCCCEEEec
Confidence 444444 7999993
No 271
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.04 E-value=38 Score=34.50 Aligned_cols=117 Identities=17% Similarity=0.297 Sum_probs=71.5
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCE-EEEechh---hhhccCC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNML---ESMIDHP 382 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpv-i~aTqmL---eSM~~~~ 382 (453)
+++|...+-...-++.+.+-+.. .+.+|+. -+ .+++++=...-+++++.|+++|.+| .=-..+- +.....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D---gS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~- 148 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID---GA-ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE- 148 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe---CC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc-
Confidence 56777777766544444443333 5799994 33 4677655566799999999999987 1111110 000000
Q ss_pred CCchHHHHHHHHHHH-hCccEEEecCcccCCCC--HHHHHHHHHHHHHHH
Q 012928 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVALRT 429 (453)
Q Consensus 383 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y--P~eaV~~m~~I~~~a 429 (453)
.-...+..++..++. -|+|++-.+-.|+.|.| |---...+++|....
T Consensus 149 ~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~ 198 (283)
T PRK07998 149 ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS 198 (283)
T ss_pred ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC
Confidence 000112445566664 69999999999999999 544456677775543
No 272
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.97 E-value=23 Score=36.64 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=41.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CcEEEeecCCCChHHHHHHHHHHHH
Q 012928 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 102 KIi~TiGPss~s~e~i~~Li~aG--mnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
-..+.+|-..++.+.+.+|+++| .++.=+..|||......++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 47778888888899999999999 6999999999988877777777775
No 273
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.87 E-value=30 Score=35.08 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=45.9
Q ss_pred HhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh--hccHHHHHhh-cCEEEEeC
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g--v~NldeI~~~-sDgImIgR 338 (453)
-+..+++..+++.|+|+|.+.. -+++++.++.+.+. .++++.| .-| .+|+.++++. +|+|.+|.
T Consensus 196 v~tleea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leA----sGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEA----SGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEECh
Confidence 3456777788899999999975 47888877766552 3444443 223 4788888887 89999974
No 274
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.84 E-value=2e+02 Score=28.14 Aligned_cols=132 Identities=11% Similarity=0.014 Sum_probs=72.9
Q ss_pred HHHHhhhhcCCcEEEecccc----------CHHHHHHHHHHHHhcCCCceEEEE-----ec--------ChhhhccHHHH
Q 012928 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIHVIVK-----IE--------SADSIPNLHSI 327 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~----------sa~dv~~v~~~L~~~~~~i~IIak-----IE--------T~~gv~NldeI 327 (453)
+.++.+.+.|.|+|-++.-. +++++..+++.+++.|-.+..++- .. -.++++.+..-
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 104 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKA 104 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence 55677778999999887422 577788899999887755433221 10 11234444444
Q ss_pred Hhh-----cCEEEEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHh
Q 012928 328 ISA-----SDGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (453)
Q Consensus 328 ~~~-----sDgImIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (453)
++. +..|.++.++...+.+. +.+....+++...|.++|+.+.+ |-+.....++..+.-++...+
T Consensus 105 i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i-----E~~~~~~~~~~~~~~~ll~~v-- 177 (283)
T PRK13209 105 IQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF-----EIMDTPFMNSISKALGYAHYL-- 177 (283)
T ss_pred HHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE-----eecCCcccCCHHHHHHHHHHh--
Confidence 443 45666654433222221 12344457788888888887665 333333444544544444443
Q ss_pred CccEEEecCcc
Q 012928 399 GADAVMLSGET 409 (453)
Q Consensus 399 G~D~vmLs~ET 409 (453)
+.+.+-+.-+|
T Consensus 178 ~~~~lgl~~D~ 188 (283)
T PRK13209 178 NSPWFQLYPDI 188 (283)
T ss_pred CCCccceEecc
Confidence 34555554443
No 275
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=55.41 E-value=34 Score=34.72 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=47.7
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEe
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIg 337 (453)
..++.+.+++.|+|.|.+=. -+++++.++.+.+.+.+.++ +||=.-|+ +|+.++++. .|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 45666677899999999986 48999998888886544543 45655555 678888777 8988876
No 276
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=55.18 E-value=2.1e+02 Score=27.94 Aligned_cols=135 Identities=11% Similarity=0.159 Sum_probs=92.5
Q ss_pred hhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCC--C-HHH
Q 012928 276 GVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE--D-VPL 352 (453)
Q Consensus 276 a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e--~-v~~ 352 (453)
....|++.+.+- ++-.++..++.+++++.|-...+-.|=+|+ |+.++..+...|.++| .+++=|+- + +..
T Consensus 83 ~a~agas~~tfH-~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGFGGQkFme~ 155 (224)
T KOG3111|consen 83 MAKAGASLFTFH-YEATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGFGGQKFMED 155 (224)
T ss_pred HHhcCcceEEEE-EeeccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCCchhhhHHH
Confidence 346799987664 455577888889999988887887787875 6667766666787777 34555552 2 334
Q ss_pred HHHHHHHHHHHcCCCEE-EEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 353 LQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi-~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
...++-+.-.+...+.| +- ....|.. +..+...|+++++-..-.-.-.-|-++++.|++.+..+-
T Consensus 156 mm~KV~~lR~kyp~l~ievD--------GGv~~~t-----i~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 156 MMPKVEWLREKYPNLDIEVD--------GGVGPST-----IDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHHHHHHhCCCceEEec--------CCcCcch-----HHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 44555555567888877 31 1223332 556777899988876555566779999999999988764
No 277
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=54.99 E-value=1.1e+02 Score=30.70 Aligned_cols=146 Identities=18% Similarity=0.275 Sum_probs=76.5
Q ss_pred HhhHHHHHhhhhcCCcEEEeccc--c---------CHHHHHHHHHHHHhcCCCceEEEEecC----hhhhccHHHHHhh-
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFV--K---------DAKVVHELKDYLKSCNADIHVIVKIES----ADSIPNLHSIISA- 330 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV--~---------sa~dv~~v~~~L~~~~~~i~IIakIET----~~gv~NldeI~~~- 330 (453)
.+|+..+...++.++|++=+.+- + ..+.+..+.+.+.+ -.++++++|+=- ..-..-+.+..+.
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~-~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g 189 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVRE-AVDIPVFVKLSPNFTDIEPFAIAAELAADG 189 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHH-HHSSEEEEEE-STSSCHHHHHHHHHHHTHT
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHh-ccCCCEEEEecCCCCchHHHHHHHHhhccc
Confidence 44554444445588998866431 1 11222223333322 237899999944 1112222222222
Q ss_pred cCEEE----EeCCC-ccccC-------------CCCCHHHHHHHHHHHHHHcC--CCEEEEechhhhhccCCCCchHHHH
Q 012928 331 SDGAM----VARGD-LGAEL-------------PIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVS 390 (453)
Q Consensus 331 sDgIm----IgRGD-Lg~el-------------g~e~v~~aqk~Ii~~c~~aG--kpvi~aTqmLeSM~~~~~PtrAEv~ 390 (453)
.|||. +..++ +-.+. |..--+.+.+.+-+.++..+ .|+|-. .+.-| ..
T Consensus 190 ~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~---------GGI~s---~~ 257 (295)
T PF01180_consen 190 ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV---------GGIHS---GE 257 (295)
T ss_dssp ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE---------SS--S---HH
T ss_pred eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe---------CCcCC---HH
Confidence 68887 44444 21111 11234566777777777666 665553 34444 56
Q ss_pred HHHHHHHhCccEEEecCcc-cCCCCHHHHHHHHHHHHHHHhc
Q 012928 391 DIAIAVREGADAVMLSGET-AHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 391 Dv~nav~~G~D~vmLs~ET-A~G~yP~eaV~~m~~I~~~aE~ 431 (453)
|+..++..|||+|.+.... -.|.. ..++|+++.|+
T Consensus 258 da~e~l~aGA~~Vqv~Sal~~~Gp~------~~~~i~~~L~~ 293 (295)
T PF01180_consen 258 DAIEFLMAGASAVQVCSALIYRGPG------VIRRINRELEE 293 (295)
T ss_dssp HHHHHHHHTESEEEESHHHHHHGTT------HHHHHHHHHHH
T ss_pred HHHHHHHhCCCHheechhhhhcCcH------HHHHHHHHHHh
Confidence 8999999999999997433 22443 35555555543
No 278
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.73 E-value=1e+02 Score=31.35 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=46.8
Q ss_pred cCEEEEeC-CCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-HHHHHHHHHhCccEEEecCc
Q 012928 331 SDGAMVAR-GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 331 sDgImIgR-GDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~E 408 (453)
++||++.- .-=...|..++-..+.+..++.+ +..+||++- ....+-.| +.-.-.+-..|+|++|+..=
T Consensus 43 v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~G---------v~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 43 VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVG---------ATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEE---------eccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 78888741 11111222233333333333333 234666653 22222234 44455666779999998643
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 012928 409 TAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE 430 (453)
--...-+-+.+++.+.|+..++
T Consensus 113 ~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 113 MWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 2222224678888888888774
No 279
>PRK08185 hypothetical protein; Provisional
Probab=54.48 E-value=1.7e+02 Score=29.75 Aligned_cols=119 Identities=14% Similarity=0.255 Sum_probs=79.1
Q ss_pred CCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhh----hccC
Q 012928 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES----MIDH 381 (453)
Q Consensus 307 ~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeS----M~~~ 381 (453)
..++|...+....-++.+..-+.. .+.||+..-+| ++++-...-+++++.|+++|.++=.-=..+-. ....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 467888888888766666655554 57899976655 66677777899999999999997321111110 0000
Q ss_pred CCC-chHHHHHHHHHHHh-CccEEEecCcccCCCCHH-----HHHHHHHHHHHHH
Q 012928 382 PTP-TRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (453)
Q Consensus 382 ~~P-trAEv~Dv~nav~~-G~D~vmLs~ETA~G~yP~-----eaV~~m~~I~~~a 429 (453)
... ......++..++.. |+|++-.+-.|+.|.||- --+..+++|....
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 000 01124445678876 999999999999999964 3577777776654
No 280
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=54.40 E-value=1.7e+02 Score=26.49 Aligned_cols=125 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCcc-------c
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG-------A 343 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg-------~ 343 (453)
+++.+.+.|+|+|-++.-.. ....++... +....+-+-+.|. +.+.+.... +|.+++++..=+ .
T Consensus 64 ~~~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~---~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~ 135 (196)
T cd00564 64 RVDLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSL---EEALRAEELGADYVGFGPVFPTPTKPGAGP 135 (196)
T ss_pred hHHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCH---HHHHHHhhcCCCEEEECCccCCCCCCCCCC
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
..+++.+..+.+. ...|++.+ +..+. .++..+...|+|++.+.+.--.-.-|.++++.+.
T Consensus 136 ~~~~~~~~~~~~~-------~~~pv~a~----------GGi~~---~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 136 PLGLELLREIAEL-------VEIPVVAI----------GGITP---ENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCCHHHHHHHHHh-------CCCCEEEE----------CCCCH---HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Q ss_pred H
Q 012928 424 T 424 (453)
Q Consensus 424 ~ 424 (453)
+
T Consensus 196 ~ 196 (196)
T cd00564 196 A 196 (196)
T ss_pred C
No 281
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=54.35 E-value=85 Score=31.01 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCCchHHHHHH-HHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 381 HPTPTRAEVSDI-AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 381 ~~~PtrAEv~Dv-~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
...++..|..+. ..+-..|+|++|+..=--...-+-+.++..+.|+..+.
T Consensus 73 v~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 73 VGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred cCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 344555564444 45556699999996543333346788999999988654
No 282
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=54.31 E-value=1.9e+02 Score=30.37 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=70.6
Q ss_pred hhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCCCH
Q 012928 275 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDV 350 (453)
Q Consensus 275 ~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e~v 350 (453)
.+...|+|+|=++.-. -.+..++..+ +.+..|-+-+ .|++|+..+ +|.|.+|+---+..=+...
T Consensus 212 lAl~~~aDGVHLgq~d--l~~~~aR~ll---g~~~iIG~S~------Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~- 279 (347)
T PRK02615 212 IALAVDADGVHLGQED--LPLAVARQLL---GPEKIIGRST------TNPEEMAKAIAEGADYIGVGPVFPTPTKPGKA- 279 (347)
T ss_pred HHHHcCCCEEEeChhh--cCHHHHHHhc---CCCCEEEEec------CCHHHHHHHHHcCCCEEEECCCcCCCCCCCCC-
Confidence 3456688887665311 1133444443 3333333333 344554443 7999998754331111100
Q ss_pred HHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 351 ~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
+.--+.+-..+.....|++.. .+. +.. ++..+...|+|+|.+.+.-....-|.++++.+.....+
T Consensus 280 ~~Gle~l~~~~~~~~iPv~Ai---------GGI-~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 280 PAGLEYLKYAAKEAPIPWFAI---------GGI-DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred CCCHHHHHHHHHhCCCCEEEE---------CCC-CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 101122222344557887653 222 222 34466778999999987766667899999988887654
No 283
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=54.23 E-value=1.2e+02 Score=31.91 Aligned_cols=95 Identities=26% Similarity=0.341 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCC
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 366 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGk 366 (453)
+-+++..+++.. +.++|.| ++-+.++...+ +|+|.++-.- |..+ +..+.....+.+.+.+.+.
T Consensus 224 ~w~~i~~ir~~~-----~~pviiK-----gV~~~eda~~a~~~G~d~I~VSnhG-Grql--d~~~~~~~~L~ei~~~~~~ 290 (361)
T cd04736 224 NWQDLRWLRDLW-----PHKLLVK-----GIVTAEDAKRCIELGADGVILSNHG-GRQL--DDAIAPIEALAEIVAATYK 290 (361)
T ss_pred CHHHHHHHHHhC-----CCCEEEe-----cCCCHHHHHHHHHCCcCEEEECCCC-cCCC--cCCccHHHHHHHHHHHhCC
Confidence 345676666654 2345555 23344443333 7898875110 1111 1111112222233334468
Q ss_pred CEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 367 pvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
|+|. ..+.-+ -.|+..++..|+|+||+..-.-
T Consensus 291 ~vi~---------dGGIr~---g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 291 PVLI---------DSGIRR---GSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred eEEE---------eCCCCC---HHHHHHHHHcCCCEEEECHHHH
Confidence 8877 344444 6789999999999999865443
No 284
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=53.97 E-value=2.9e+02 Score=29.12 Aligned_cols=69 Identities=12% Similarity=0.188 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-HHHHHHH---HHhCccEEEecCcccCCCCHHHHHHHHHHH
Q 012928 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIA---VREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (453)
Q Consensus 350 v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-v~Dv~na---v~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (453)
....-+.+++.|-+-..||++|. .+.-+-.| ...+..+ +..|+-++..-.=.-.=.. -|+|++++.|
T Consensus 266 ~~~~~~~~V~ac~ag~vpVviAG--------G~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~-~ea~~~~~~i 336 (348)
T PRK09250 266 PIDLVRYQVANCYMGRRGLINSG--------GASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM-AEGVKLLNAI 336 (348)
T ss_pred hHHHHHHHHHhhccCCceEEEeC--------CCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc-HHHHHHHHHH
Confidence 34445666777755568999972 22212222 6778888 8999988876433333333 4899999988
Q ss_pred HH
Q 012928 426 AL 427 (453)
Q Consensus 426 ~~ 427 (453)
..
T Consensus 337 ~~ 338 (348)
T PRK09250 337 QD 338 (348)
T ss_pred HH
Confidence 64
No 285
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=53.95 E-value=1.7e+02 Score=30.62 Aligned_cols=119 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCC-CCHHHHHHHHHHHHHHc
Q 012928 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSM 364 (453)
Q Consensus 290 ~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~-e~v~~aqk~Ii~~c~~a 364 (453)
.+.+++..+++.. +.+|++| ++.+.+++..+ +|+|.+.- --|..+.. .....+...+.....+.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vsn-hgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLSN-HGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEEC-CCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 3566666666543 5678888 34455554443 68888763 22443321 12233444554444343
Q ss_pred --CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC---HHHHHHHHHHHHHHHhc
Q 012928 365 --QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF---PLKAVKVMHTVALRTES 431 (453)
Q Consensus 365 --Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~aE~ 431 (453)
..|+|.. .+.-+ -.|++.++..|+|++.+..-.-.+.. .-...+++..+..+.+.
T Consensus 269 ~~~~~vi~~---------GGIr~---G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~ 328 (344)
T cd02922 269 FDKIEVYVD---------GGVRR---GTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIET 328 (344)
T ss_pred CCCceEEEe---------CCCCC---HHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3677764 23322 67899999999999998532211110 12334455665555553
No 286
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=53.82 E-value=91 Score=31.31 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHHH-HHHHHhcCCCceEEEEecChhhhccHHHHHhh-----cCEEEEeC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~v-~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-----sDgImIgR 338 (453)
+.+++.++.|+++|.+. +.-+.++-.++ +..++..+.+++||+-+- . +.+..-+.++. +|++|+.+
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 45577888999998663 22334443333 444555566788888874 2 33333333332 68999865
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
--... .+-+.+...-+.+ |.+.+.|+++.
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 44321 1212333333444 44567887776
No 287
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=53.51 E-value=2.6e+02 Score=28.44 Aligned_cols=119 Identities=16% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE-echh--hhhccCC
Q 012928 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNML--ESMIDHP 382 (453)
Q Consensus 307 ~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a-TqmL--eSM~~~~ 382 (453)
.+++|.........++.+..-+.. .+.||+..- .+++++=...-+++++.|++.|..|=.= .++- |.-..+.
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 368999999888877666665555 689999744 4566666677799999999999886321 1111 1111111
Q ss_pred C---CchHHHHHHHHHH-HhCccEEEecCcccCCCCHH-----HHHHHHHHHHHHH
Q 012928 383 T---PTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (453)
Q Consensus 383 ~---PtrAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~-----eaV~~m~~I~~~a 429 (453)
. -...+..++..++ .-|+|++-.+-.|+.|.|+- --++.|.+|...+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 0 0011244555665 67999999999999999987 4577888887776
No 288
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=53.02 E-value=57 Score=26.56 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCCCHHHHHH-HHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeec
Q 012928 110 STSSREMIWK-LAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (453)
Q Consensus 110 ss~s~e~i~~-Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDL 165 (453)
.+.+-|.+.+ +-..|+.+.|-+=++|..+..+++++.+++ + ..++|..|-
T Consensus 18 ~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G-~~~~itpDG 68 (74)
T PF04028_consen 18 RSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----G-YSIAITPDG 68 (74)
T ss_pred cCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----C-CeEEEeCCC
Confidence 4677888877 556899999999889988888888877763 3 788998883
No 289
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.00 E-value=2.3e+02 Score=27.67 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH-hCccEEEecCcccCCCCHHHHH
Q 012928 360 RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPLKAV 419 (453)
Q Consensus 360 ~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP~eaV 419 (453)
.++..+.|+|.+ .+.-+ ..|+..+.. .|+|++|...---.|.++.+.+
T Consensus 192 ~~~~~~ipvia~---------GGv~s---~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 192 VSDAVNVPVIAS---------GGAGN---LEHFVEAFTEGGADAALAASIFHFGEITIGEL 240 (253)
T ss_pred HHhhCCCCEEEE---------CCCCC---HHHHHHHHHhCCccEEeEhHHHHcCCCCHHHH
Confidence 345568999986 33444 456666675 5999999975444788887654
No 290
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.95 E-value=2.2e+02 Score=27.39 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=75.3
Q ss_pred CHhhHHH-HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccc
Q 012928 266 TDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (453)
Q Consensus 266 tekD~~D-I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~ 343 (453)
+..+... .+.+++.|++.+=+.+ +++...+.++.+.++.+..+ +.=.=|.--.+.++..+++ +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~~--~iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDRA--LIGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCCc--EEeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 3444433 3556788888888885 66766666766665554332 2222233333445555554 6777652
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHH
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (453)
..-..+++.|+..|.+++.. .-| .+++..+...|+|.+-+-.- +..+.+.++.+.
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G-----------~~t---~~E~~~A~~~Gad~vk~Fpa---~~~G~~~l~~l~ 145 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPG-----------VAT---PTEAFAALRAGAQALKLFPA---SQLGPAGIKALR 145 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcc-----------cCC---HHHHHHHHHcCCCEEEECCC---CCCCHHHHHHHH
Confidence 23356788899999998863 122 24467888999999987432 233445555554
Q ss_pred HH
Q 012928 424 TV 425 (453)
Q Consensus 424 ~I 425 (453)
..
T Consensus 146 ~~ 147 (206)
T PRK09140 146 AV 147 (206)
T ss_pred hh
Confidence 44
No 291
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.51 E-value=22 Score=36.07 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=44.5
Q ss_pred CHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh--hccHHHHHhh-cCEEEEeC
Q 012928 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 266 tekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g--v~NldeI~~~-sDgImIgR 338 (453)
+-+..+++..+...|+|+|++.. -+++++.++.+.+ +..+. +|-.-| .+|+.++++. +|+|.+|.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~---~~~i~----i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLV---PSAIV----TEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhc---CCCce----EEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 44566777778889999999975 4677777666654 22333 232333 4788888887 89999974
No 292
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=52.36 E-value=2.3e+02 Score=29.38 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=87.2
Q ss_pred HhhHHHHHhhhhc--CCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh---h--c--CEEEEe
Q 012928 267 DKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---A--S--DGAMVA 337 (453)
Q Consensus 267 ekD~~DI~~a~~~--gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~---~--s--DgImIg 337 (453)
++|.+-|+.+++. |-..+.-| -+.+.+..+-.+..+.+. .+++. ++.-++-+.++.. . . +-|++.
T Consensus 136 ~kD~evleaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~--s~~Dln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAW--SPLDINLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEE--cHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4577777776552 33344444 246666666666655444 34443 2333444444433 2 2 567888
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHH----cCCCEEEEech-----hhhhc------c-CCCCchH---HHHHHHHHHHh
Q 012928 338 RGDLGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNM-----LESMI------D-HPTPTRA---EVSDIAIAVRE 398 (453)
Q Consensus 338 RGDLg~elg~e~v~~aqk~Ii~~c~~----aGkpvi~aTqm-----LeSM~------~-~~~PtrA---Ev~Dv~nav~~ 398 (453)
++=.++..|.+.....+.+|-..|-+ .|-|+|..+-. =|+.. . .+.-.|+ |+.-...++..
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ 289 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLA 289 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHh
Confidence 88777777777777777777666655 45565543220 02211 0 0001122 56667788889
Q ss_pred CccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
|+|.++|. || ++|+++++++...
T Consensus 290 ga~i~vm~-------hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 290 GADIFMMR-------HP-ESVKTLKEIIDTL 312 (319)
T ss_pred cCcEEEEe-------CH-HHHHHHHHHHHHH
Confidence 99999996 77 8999999987653
No 293
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=52.22 E-value=1.8e+02 Score=29.33 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=55.9
Q ss_pred HHHHhhhhcCCcEEEecc------ccCHHHHHH-HHHHHHhcCCCceEEEEecC---hhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf------V~sa~dv~~-v~~~L~~~~~~i~IIakIET---~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.++|.++.|+++|.+.= .-|.++-.+ ++...+....++.||+-+-+ .++++......+. +|++|+.+=
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 556788899999986531 122233333 34445555677889987753 4555555554443 799999754
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
-.. +. .-..+....-..|.+. +.|+++.
T Consensus 105 ~y~---~~-~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YYN---KP-NQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cCC---CC-CHHHHHHHHHHHHHhccCCCEEEE
Confidence 321 11 1133334444456666 7888865
No 294
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.05 E-value=80 Score=31.05 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
..+++.|.+.|..+.|-+--+..+. +|+++++...|.|+-+-. -+..+..+-..|+++++|.+.+.
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D----------~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTD----------NVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCC----------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456777777888776664443332 578888888887776522 24567778899999999988763
No 295
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=51.93 E-value=45 Score=34.93 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=55.1
Q ss_pred HHHHhhhhcCCcEEEeccc------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFV------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGD 340 (453)
+|.+.+.+.|+|+|.+|-- ..+..+..+.+.....+.++.||+ -.|+.+-.+|+++ +|++++||.=
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~----dGGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIF----DSGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEE----ECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 5566778899999999631 122334445554444445677776 2466666676665 7999999965
Q ss_pred cc-ccC-CCC----CHHHHHHHHHHHHHHcCCC
Q 012928 341 LG-AEL-PIE----DVPLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 341 Lg-~el-g~e----~v~~aqk~Ii~~c~~aGkp 367 (453)
|- ... |-+ .+..+++++.......|..
T Consensus 309 l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 42 111 222 2334556666666666643
No 296
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=51.75 E-value=2e+02 Score=26.66 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCC-------Cccc
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARG-------DLGA 343 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRG-------DLg~ 343 (453)
+++.+.+.|+|+|-++ ...-+...++..+ +....|-+-+-|. +.+.+..+. +|.+++++- +...
T Consensus 65 ~~~la~~~g~~GvHl~--~~~~~~~~~r~~~---~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~ 136 (196)
T TIGR00693 65 RVDLALALGADGVHLG--QDDLPASEARALL---GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDPAP 136 (196)
T ss_pred HHHHHHHcCCCEEecC--cccCCHHHHHHhc---CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCCCC
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHH
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (453)
.+|++.+..+.+.. .++|++....+=. .++..+...|+|++.+.+.--.-+.|.++++.|
T Consensus 137 ~~g~~~l~~~~~~~------~~~pv~a~GGI~~-------------~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 137 PAGVELLREIAATS------IDIPIVAIGGITL-------------ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCHHHHHHHHHhc------CCCCEEEECCcCH-------------HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 297
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=51.51 E-value=3.7e+02 Score=29.67 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=94.0
Q ss_pred CCCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhc-----cHHHHHhh-cC--
Q 012928 264 SITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SD-- 332 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET-~~gv~-----NldeI~~~-sD-- 332 (453)
.+|..++..| +...+.|+|.|=+.| .-++.|.+.++...+..-.+..+.+..=. ..++. .++..+.. .|
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 4566776555 445678999998765 45777776666554321123444443211 12221 12233332 34
Q ss_pred EEEEeCCCccccC----CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecC
Q 012928 333 GAMVARGDLGAEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (453)
Q Consensus 333 gImIgRGDLg~el----g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (453)
.+++.-.|+-.+- ..+++.......++.++++|..|-+.+. ......+-+..-+.+++. +...|+|.+.| .
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l-~ 178 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGADWVVL-C 178 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHHHHHHHhCCCCeEEE-c
Confidence 4555545543221 2245666778889999999998765321 110111122222445444 34579999998 5
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q 012928 408 ETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~~~a 429 (453)
+|.=...|.+.-++++.+.++.
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 8888899999999998888765
No 298
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=51.37 E-value=27 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=33.6
Q ss_pred EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 333 gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
.+++|-.|+....+.+++....+.++..+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 5677888998777778888888999999999999988754
No 299
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=51.06 E-value=94 Score=29.51 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCceEEEEecChhh-hccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADS-IPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~g-v~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.|.+.|+.+.|-+.-|.... .++.++++...|.|+.+.. . ......+-+.|+++++|++.+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~-~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE---------N-YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEE
Confidence 3567778888988887776565532 4567788877888876522 1 446677889999999998875
No 300
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=51.03 E-value=2.1e+02 Score=26.61 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=56.1
Q ss_pred hHHHHHhhhhcCCcEEEecccc-CHHH----HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCcc
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVK-DAKV----VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG 342 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~-sa~d----v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg 342 (453)
-.+.++.+++.|+++|-+-.-. +..+ +..+++.... .++.++.. +.++...+. +|++.++-.|+.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~~ 93 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDLP 93 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccCC
Confidence 3466778888999998764321 1122 2222222222 23445442 344544444 788877533221
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 343 AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 343 ~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
...+...+..++.++++| +|..| +..+...|+|.+.++
T Consensus 94 ------------~~~~~~~~~~~~~~g~~~-----------~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 94 ------------VADARALLGPDAIIGLST-----------HTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred ------------HHHHHHHcCCCCEEEEeC-----------CCHHH---HHHHhHcCCCEEEEC
Confidence 112233445677777652 35444 557778899999985
No 301
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=51.03 E-value=2.6e+02 Score=27.72 Aligned_cols=64 Identities=11% Similarity=0.316 Sum_probs=40.6
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEE--Ee--cC-hhhhccHHHHHhh-cCEEEEeCCCcc
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KI--ES-ADSIPNLHSIISA-SDGAMVARGDLG 342 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIa--kI--ET-~~gv~NldeI~~~-sDgImIgRGDLg 342 (453)
..+.+.|+|||=.+|.. ++..+++++... .++|++ =| +| .++++++.+++++ ++|+.+||.=+.
T Consensus 167 ~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 167 RVAAELGADIVKTNYTG---DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred HHHHHHCCCEEeeCCCC---CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 55678999999888764 455556655432 344443 23 34 3566667777766 789988876443
No 302
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=51.02 E-value=1.7e+02 Score=29.95 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=73.2
Q ss_pred ceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhhhccCCC
Q 012928 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHPT 383 (453)
Q Consensus 309 i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeSM~~~~~ 383 (453)
++|...+.....++.+..-+.. .+.+|+..- .+++++=...-+++++.|++.|.+|= .-..--+..... .
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~-~ 152 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS----HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD-G 152 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-c
Confidence 6788888877755444443333 578999643 35666666677999999999999862 111100110000 0
Q ss_pred CchHHHHHHHHHHH-hCccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 384 PTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 384 PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
-......+...++. -|+|++-.+--|+.|.| |---.+.|++|..+.
T Consensus 153 ~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred cccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 00112345556675 49999999999999999 544567777776544
No 303
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=50.99 E-value=1.4e+02 Score=32.31 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=60.0
Q ss_pred hccHHHHHhh----cCEEEEeCC-------CccccCCCCCHHHHHHHHH--HHHHHcCCCEEEEechhhhhccCCCCchH
Q 012928 321 IPNLHSIISA----SDGAMVARG-------DLGAELPIEDVPLLQEDII--RRCRSMQKPVIVATNMLESMIDHPTPTRA 387 (453)
Q Consensus 321 v~NldeI~~~----sDgImIgRG-------DLg~elg~e~v~~aqk~Ii--~~c~~aGkpvi~aTqmLeSM~~~~~PtrA 387 (453)
..+.+|++.+ +|.|.+|+- +-..-+|++.+..+++.+- ..++..++|++-. -.-.+
T Consensus 307 tHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--------GGI~~--- 375 (437)
T PRK12290 307 THGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--------GGIDQ--- 375 (437)
T ss_pred cCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE--------CCcCH---
Confidence 4567776655 699999863 1222345445544433321 1223457897753 22222
Q ss_pred HHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 388 EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 388 Ev~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
.++......|+|++-..+.-..-..|.++++.+.++...
T Consensus 376 --~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 376 --SNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred --HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 345567788999999887766777899999999987654
No 304
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=50.69 E-value=80 Score=30.00 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.+.+.+..+.+-+.-+.... +|++++++..|.|+.+-.. +..+..+-+.|+++++|.+.+
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3455667777777665544333332 5778888888988775321 356778889999999998775
No 305
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=50.69 E-value=2.8e+02 Score=28.72 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=63.7
Q ss_pred CCCCHhhHHHH--------HhhhhcCCcEEEecccc-------------C------------HHHHHHHHHHHHh-cCCC
Q 012928 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFVK-------------D------------AKVVHELKDYLKS-CNAD 308 (453)
Q Consensus 263 p~ltekD~~DI--------~~a~~~gvd~I~lSfV~-------------s------------a~dv~~v~~~L~~-~~~~ 308 (453)
..+|..|++.+ +.+.+.|+|+|-+.... . ..-+.++-+.+.+ .+.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 35788888776 23356899999774333 1 1122222233332 3445
Q ss_pred ceEEEEecChhh---------hccHHHHHhh-----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHH-HcCCCEEEEec
Q 012928 309 IHVIVKIESADS---------IPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATN 373 (453)
Q Consensus 309 i~IIakIET~~g---------v~NldeI~~~-----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~-~aGkpvi~aTq 373 (453)
.|..||-..+. .+..-+|++. .|.+=+..|......+...+ ...+..+ ..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~-----~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPP-----DFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccch-----HHHHHHHHHcCCCEEEECC
Confidence 48888843321 1222233322 57777765544322211112 2222222 24789888532
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHhC-ccEEEec
Q 012928 374 MLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (453)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 406 (453)
-.|.. .-.++..| +|.|++.
T Consensus 294 --------i~~~~-----a~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 --------YDAES-----AEAALADGKADLVAFG 314 (338)
T ss_pred --------CCHHH-----HHHHHHcCCCCEEEeC
Confidence 11333 33777766 9999986
No 306
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.19 E-value=33 Score=34.94 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=47.6
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..+++..+++.|+|.|.+=.. +++++.++..++.. . .+||-.-|+ +|+.++++. +|.|.+|.
T Consensus 202 slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~---~----~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 202 RLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG---R----AIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC---C----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 456677778999999999775 78888887776642 2 267777665 788888877 89999974
No 307
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=50.01 E-value=99 Score=30.81 Aligned_cols=98 Identities=21% Similarity=0.169 Sum_probs=52.5
Q ss_pred HHHHhh-cCEEEEeCC-CccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccE
Q 012928 325 HSIISA-SDGAMVARG-DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 402 (453)
Q Consensus 325 deI~~~-sDgImIgRG-DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~ 402 (453)
+-.++. .||++++-. -=+..+..++-..+.+.+++.+ ....|+++.+ ....|+.-+.-.-.+...|+|+
T Consensus 29 ~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv--------~~~st~~~i~~a~~a~~~Gad~ 99 (289)
T PF00701_consen 29 DFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGV--------GANSTEEAIELARHAQDAGADA 99 (289)
T ss_dssp HHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEE--------ESSSHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecC--------cchhHHHHHHHHHHHhhcCceE
Confidence 334444 799999521 1111222222222333333322 2345666642 2223443355566677889999
Q ss_pred EEecCcccCCCCHHHHHHHHHHHHHHHhc
Q 012928 403 VMLSGETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 403 vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
+|+..=--...-+-+.+++.+.|+..+..
T Consensus 100 v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 100 VLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp EEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred EEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 99864433445577889999999966554
No 308
>PLN02826 dihydroorotate dehydrogenase
Probab=49.82 E-value=3.6e+02 Score=28.94 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCceEEEEec---ChhhhccHHHHHhh--cCEEEEe-----C-CCcc-----ccC-CC---CCHHHHHHHHHHHHHHc--
Q 012928 307 ADIHVIVKIE---SADSIPNLHSIISA--SDGAMVA-----R-GDLG-----AEL-PI---EDVPLLQEDIIRRCRSM-- 364 (453)
Q Consensus 307 ~~i~IIakIE---T~~gv~NldeI~~~--sDgImIg-----R-GDLg-----~el-g~---e~v~~aqk~Ii~~c~~a-- 364 (453)
..++|++||= |.+.+..+-+.+.. +|||.+. | +|+- .+. |+ +--+...+.+-...++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 3589999993 33334444333322 7998775 3 3331 111 12 22233444444444444
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
..|+|-. .+.-+ ..|++.++..||++|.+-.
T Consensus 341 ~ipIIgv---------GGI~s---g~Da~e~i~AGAs~VQv~T 371 (409)
T PLN02826 341 KIPLVGC---------GGVSS---GEDAYKKIRAGASLVQLYT 371 (409)
T ss_pred CCcEEEE---------CCCCC---HHHHHHHHHhCCCeeeecH
Confidence 3565553 33333 5689999999999999863
No 309
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=49.65 E-value=44 Score=35.36 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=59.3
Q ss_pred hHHHHHhhhhcC-CcEEEecccc--C---------------HHHHHHHHHHHHhcC--CCceEEEEecChhhhccHHHHH
Q 012928 269 DWEDIKFGVDNQ-VDFYAVSFVK--D---------------AKVVHELKDYLKSCN--ADIHVIVKIESADSIPNLHSII 328 (453)
Q Consensus 269 D~~DI~~a~~~g-vd~I~lSfV~--s---------------a~dv~~v~~~L~~~~--~~i~IIakIET~~gv~NldeI~ 328 (453)
+.+++..+++.+ +|+|.++-.. + ..-+.++.+++.+.+ .++.||+ .-|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 344565555555 9999887653 1 122334556565443 4677776 55666667777
Q ss_pred hh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEec
Q 012928 329 SA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (453)
Q Consensus 329 ~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTq 373 (453)
++ +|++.+||.=|.. +-......|+.-..|+.+|||
T Consensus 302 kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC
Confidence 65 7999998765432 112234789999999999998
No 310
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.32 E-value=1.2e+02 Score=28.80 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.|.+.|+++.+-+.-+... ++.++...-.|.|+.+..+ ...+..+-+.|++.|+|.+.+
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 456777888888876665444443 4566777778888876332 356777888999999998765
No 311
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=49.19 E-value=2.9e+02 Score=27.69 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=87.9
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEec-cccCH-----HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cC--EE
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVS-FVKDA-----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SD--GA 334 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lS-fV~sa-----~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sD--gI 334 (453)
+|.+++..| +...+.|+|.|=+. |+... .|-.++...+... .+..+.+..-+.+++ +..++. .| .+
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv---~~A~~~g~~~i~i 92 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA---ERALAAGVDEVAV 92 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHH---HHHHHcCcCEEEE
Confidence 466666555 45567899998664 43221 2333444555432 245555554344433 333332 44 35
Q ss_pred EEeCCCcccc--CC--CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCcc
Q 012928 335 MVARGDLGAE--LP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (453)
Q Consensus 335 mIgRGDLg~e--lg--~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 409 (453)
++.-.|+-.. ++ .++....-...++.++++|+.+.+.-.+-=+.-..+.-+...+.+++. +...|+|.+-|. +|
T Consensus 93 ~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT 171 (274)
T cd07938 93 FVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG-DT 171 (274)
T ss_pred EEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC-CC
Confidence 5554553111 12 234555667888999999998754211000000111113334555444 566799999984 88
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 012928 410 AHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 410 A~G~yP~eaV~~m~~I~~~ 428 (453)
.=...|.+.-+++..+..+
T Consensus 172 ~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 172 IGVATPAQVRRLLEAVLER 190 (274)
T ss_pred CCccCHHHHHHHHHHHHHH
Confidence 8778899988888887654
No 312
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=48.98 E-value=2.4e+02 Score=26.85 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred hHHHHHhhhhcCCcEEEeccc--cCHHHHHHHHHHHHhcCCCceEEEEecCh------hh-----hccHHHHHhh-----
Q 012928 269 DWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVKIESA------DS-----IPNLHSIISA----- 330 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV--~sa~dv~~v~~~L~~~~~~i~IIakIET~------~g-----v~NldeI~~~----- 330 (453)
+.+|++.+...|+|.|.+... .+++.+ +++......++ +.-|.-. .+ -.+..|++..
T Consensus 85 ~~ed~~~~~~~Ga~~vilg~~~l~~~~~l---~ei~~~~~~~i--~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g 159 (233)
T PRK00748 85 SLETVEALLDAGVSRVIIGTAAVKNPELV---KEACKKFPGKI--VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAG 159 (233)
T ss_pred CHHHHHHHHHcCCCEEEECchHHhCHHHH---HHHHHHhCCCc--eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcC
Confidence 456777777889998877532 333333 44444433332 2222211 01 1233344332
Q ss_pred cCEEEEe-CCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhC-ccEEEecCc
Q 012928 331 SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSGE 408 (453)
Q Consensus 331 sDgImIg-RGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~E 408 (453)
+|.+++- +.-=+...| ..+ ...+++ ++....|+|.+ .+.-+. .|+..+...| +|++|+..-
T Consensus 160 ~~~ii~~~~~~~g~~~G-~d~-~~i~~l---~~~~~ipvia~---------GGi~~~---~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 160 VKAIIYTDISRDGTLSG-PNV-EATREL---AAAVPIPVIAS---------GGVSSL---DDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCEEEEeeecCcCCcCC-CCH-HHHHHH---HHhCCCCEEEe---------CCCCCH---HHHHHHHHcCCccEEEEEHH
Confidence 5655553 321122223 222 222333 44557998874 445554 4555666667 999999744
Q ss_pred ccCCCCH
Q 012928 409 TAHGKFP 415 (453)
Q Consensus 409 TA~G~yP 415 (453)
--.|+++
T Consensus 223 ~~~~~~~ 229 (233)
T PRK00748 223 LYEGKFD 229 (233)
T ss_pred HHcCCcC
Confidence 4455544
No 313
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.96 E-value=2.3e+02 Score=28.76 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHH-HHHHHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~-v~~~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+++|.+. +.-+.++-.+ ++...+..+.+++||+-+= |.++++....-.+. +|++|+-+-
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 44577788999998762 1123333333 3444555677899999874 45666655554444 799998654
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
.... ..-+.+...-+.| |.+. +.|+++.
T Consensus 113 ~y~~-~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 113 MWLP-LDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred cCCC-CCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 3211 1112333333444 5556 5888875
No 314
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=48.74 E-value=1.8e+02 Score=30.00 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=76.2
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE----EEechhhhhccCC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHP 382 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi----~aTqmLeSM~~~~ 382 (453)
.++|...+....-++.+.+-+.. .+.+|+..- .+++++=...-+++++.|+++|..|= .-..-=+......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMIDAS----HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 47888888888766555554444 579999733 56776666777999999999998862 1000001100000
Q ss_pred -CCchHHHHHHHHHHH-hCccEEEecCcccCCCCH-----HHHHHHHHHHHHHH
Q 012928 383 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP-----LKAVKVMHTVALRT 429 (453)
Q Consensus 383 -~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP-----~eaV~~m~~I~~~a 429 (453)
.-......++..++. -|+|++-.+-.|+.|.|+ .--...|.+|..+.
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
Confidence 000112455667776 499999999999999995 45667777776654
No 315
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=48.47 E-value=3e+02 Score=27.67 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=70.5
Q ss_pred HHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCC-CCHH
Q 012928 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDVP 351 (453)
Q Consensus 273 I~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~-e~v~ 351 (453)
++.+.+.|+|++.+|=.. .++-..+++.+.+.| +.+|.-|=-...-+.+..|++.++|.+=.-.=.|+ .|. ..++
T Consensus 108 ~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~ 183 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELP 183 (259)
T ss_dssp HHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCH
T ss_pred HHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccch
Confidence 355567899999987542 355566677776654 45555555556677889999887765543222322 232 3466
Q ss_pred HHHHHHHHHHHHcC-CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 352 LLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 352 ~aqk~Ii~~c~~aG-kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.-.+..++..+++. +|+.+- -+.-+++. +.... .|+|+++..
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vG---------FGI~~~e~---~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVG---------FGISTPEQ---AKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEE---------SSS-SHHH---HHHHH-TTSSEEEES
T ss_pred HHHHHHHHHHHhhcCcceEEe---------cCCCCHHH---HHHHH-ccCCEEEEC
Confidence 66677777777764 887763 44555444 33334 899999975
No 316
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=48.19 E-value=3.6e+02 Score=28.47 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=94.5
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh--hhhccHHHHHhhcCEEEEeCCCccccCCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIISASDGAMVARGDLGAELPIE 348 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~--~gv~NldeI~~~sDgImIgRGDLg~elg~e 348 (453)
+.|+..-+.|.|.|-++ |.+.++...+++.-++. +++++|-|-=- -+++. +-...|.+-|-||..+-.=
T Consensus 40 ~QI~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~rla~~~---~~~g~~k~RINPGNig~~~--- 110 (361)
T COG0821 40 AQIKALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYRLALEA---AECGVDKVRINPGNIGFKD--- 110 (361)
T ss_pred HHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHHHHHHh---hhcCcceEEECCcccCcHH---
Confidence 33444456899998776 55666666655544433 78899877432 22211 1122799999999876542
Q ss_pred CHHHHHHHHHHHHHHcCCCE--EEEechhhhhcc--CCCCchHH-----HHHHHHHHHhCccEEEecCcccCCCCHHHHH
Q 012928 349 DVPLLQEDIIRRCRSMQKPV--IVATNMLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAV 419 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGkpv--i~aTqmLeSM~~--~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV 419 (453)
--+.++++|++.|||+ ++-..-||.... -..||+.. +..+.-+-..|++-+.+| .+..-|.++|
T Consensus 111 ----~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS---~K~Sdv~~~v 183 (361)
T COG0821 111 ----RVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS---VKASDVQLMV 183 (361)
T ss_pred ----HHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHH
Confidence 4578999999999995 554444443322 23677644 333455566899999998 5677788888
Q ss_pred HHHHHHHHHHh
Q 012928 420 KVMHTVALRTE 430 (453)
Q Consensus 420 ~~m~~I~~~aE 430 (453)
+.-+.++.+.+
T Consensus 184 ~aYr~lA~~~d 194 (361)
T COG0821 184 AAYRLLAKRCD 194 (361)
T ss_pred HHHHHHHHhcC
Confidence 88888877766
No 317
>PRK07695 transcriptional regulator TenI; Provisional
Probab=48.13 E-value=35 Score=32.20 Aligned_cols=34 Identities=0% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 116 MIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 116 ~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
.+.+++.+|++..-|.--+.+.++..+.++.+++
T Consensus 19 ~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 19 AVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999988888777774
No 318
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=47.94 E-value=3e+02 Score=27.52 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=52.1
Q ss_pred CceEEEEe--cChhhhccHHHHHhh----cCEEEEeCCC-----ccccCCCCCHHHHHHHHHHHHHHc-CCCEEEEechh
Q 012928 308 DIHVIVKI--ESADSIPNLHSIISA----SDGAMVARGD-----LGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNML 375 (453)
Q Consensus 308 ~i~IIakI--ET~~gv~NldeI~~~----sDgImIgRGD-----Lg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~aTqmL 375 (453)
+.+++++| .+++.+..+-++++. +|+|=+--+= -+.++ ..-+..-.+++++.+++ ++|+.+=
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l--~~~~~~~~eiv~~vr~~~~~pv~vK---- 163 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAI--GQDPELSADVVKAVKDKTDVPVFAK---- 163 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccc--ccCHHHHHHHHHHHHHhcCCCEEEE----
Confidence 45789999 566666555555552 5666653110 00111 12344557778877765 7888872
Q ss_pred hhhccCCCCchHHHHHHHH-HHHhCccEEEecC
Q 012928 376 ESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (453)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (453)
-.|+-.+..+++. +...|+|++.+++
T Consensus 164 ------i~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 164 ------LSPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred ------CCCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 1245456666665 4568999999863
No 319
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=47.89 E-value=2.5e+02 Score=27.97 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=55.2
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHHH-HHHHHhcCCCceEEEEecC---hhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~v-~~~L~~~~~~i~IIakIET---~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+|++.+. +--+.++-.++ +..++..+.+++||+-+-. .++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 55578889999998773 22233333333 3334556678999998854 4555554443333 799998754
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.... . .-..+-+..-..|.+.++|+++.
T Consensus 106 ~~~~-~---s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 106 YYFK-P---SQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp TSSS-C---CHHHHHHHHHHHHHHSSSEEEEE
T ss_pred cccc-c---hhhHHHHHHHHHHhhcCCCEEEE
Confidence 3321 1 12223344444456678888875
No 320
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.76 E-value=2.6e+02 Score=26.81 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=65.6
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecCh------hhh-----ccHHHHHhh-----c
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA------DSI-----PNLHSIISA-----S 331 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~------~gv-----~NldeI~~~-----s 331 (453)
.+.+|++.+++.|+|.|.+.-. ...+...+.+.....+.+ .+++-|... .|. .+..+++.. +
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~-~~~~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTA-AVENPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChH-HhhChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 3567777778899999877532 122223344444444332 133333211 010 133333332 5
Q ss_pred CEEEEeCCCc-cccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCccc
Q 012928 332 DGAMVARGDL-GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (453)
Q Consensus 332 DgImIgRGDL-g~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (453)
|.+.+---+- +..-| ..+. .+-+.++....|++.+ .+.-+.. |+..+...|+|++++..---
T Consensus 164 ~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~---------GGI~~~~---di~~~~~~Ga~gv~vgsa~~ 226 (241)
T PRK13585 164 GSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIAS---------GGVTTLD---DLRALKEAGAAGVVVGSALY 226 (241)
T ss_pred CEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEe---------CCCCCHH---HHHHHHHcCCCEEEEEHHHh
Confidence 7777632211 11112 1221 2233344567898885 3444443 44455678999999976666
Q ss_pred CCCCHHH
Q 012928 411 HGKFPLK 417 (453)
Q Consensus 411 ~G~yP~e 417 (453)
.|.++++
T Consensus 227 ~~~~~~~ 233 (241)
T PRK13585 227 KGKFTLE 233 (241)
T ss_pred cCCcCHH
Confidence 6666543
No 321
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=47.70 E-value=2.6e+02 Score=28.96 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=47.9
Q ss_pred CceEEEEecChhhhccHHHHHhh-----cCEEEEeC----CCc------cccCC-C---CCHHHHHHHHHHHHHHc--CC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-----SDGAMVAR----GDL------GAELP-I---EDVPLLQEDIIRRCRSM--QK 366 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-----sDgImIgR----GDL------g~elg-~---e~v~~aqk~Ii~~c~~a--Gk 366 (453)
.++|++|+=---.-+++.+++++ +|||.+-= .+. +...| + .--+.+.+.+-...+.. ..
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 289 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRL 289 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 38899999533322345555553 68887531 010 11111 1 12333444444444444 35
Q ss_pred CEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 367 pvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
|+|-+ .+.-| ..|+..++..|||+|.+...
T Consensus 290 piig~---------GGI~~---~~da~e~l~aGA~~Vqv~ta 319 (335)
T TIGR01036 290 PIIGV---------GGISS---AQDALEKIRAGASLLQIYSG 319 (335)
T ss_pred CEEEE---------CCCCC---HHHHHHHHHcCCcHHHhhHH
Confidence 66543 22333 56888999999999998643
No 322
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=47.65 E-value=94 Score=31.05 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred cCEEEEeCCCcc--ccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-HHHHHHHHHhCccEEEecC
Q 012928 331 SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 331 sDgImIgRGDLg--~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~ 407 (453)
.||+++. |--| ..+..++-..+-+.+++.+ +-..|+++. ....+..| +...-.+-..|+|++|+..
T Consensus 36 v~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~g---------v~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 36 TDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAG---------TGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred CCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEee---------cCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 7888874 2221 2222223223333333332 123566653 22233344 4444455667999999965
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhc
Q 012928 408 ETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
=.-....+-+.+++.+.|+..++-
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCC
Confidence 443444567888999999887653
No 323
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=47.64 E-value=71 Score=30.76 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCC
Q 012928 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (453)
Q Consensus 352 ~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (453)
..-.++++.|+++|.|++=- .-| .+++..|...|+|.+=+---.+.|
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG-----------~~T---ptEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPG-----------VMT---PTEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEE-----------ESS---HHHHHHHHHTT-SEEEETTTTTTT
T ss_pred CCCHHHHHHHHHcCCcccCC-----------cCC---HHHHHHHHHCCCCEEEEecchhcC
Confidence 35578999999999997631 122 345789999999999986444444
No 324
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=47.54 E-value=3e+02 Score=27.42 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=87.9
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEecc-ccCHHHHHHHHHHHHhcCCCceEEEEecC-hhhhc-----cHHHHHhh-cCEEE
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SDGAM 335 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lSf-V~sa~dv~~v~~~L~~~~~~i~IIakIET-~~gv~-----NldeI~~~-sDgIm 335 (453)
+|..++..| +...+.|+|.|=+.| .-++.++..++...+..-.+..+.+..-. ..++. .++..+.. .|.+.
T Consensus 17 ~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~ 96 (273)
T cd07941 17 FSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVT 96 (273)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEE
Confidence 466666555 555679999997744 34677777665443332123444443211 11221 22333333 45444
Q ss_pred E--eCCCcccc--CC--CCCHHHHHHHHHHHHHHcCCCEEEE-echhhhhccCCCCchHHHHHHHHH-HHhCccEEEecC
Q 012928 336 V--ARGDLGAE--LP--IEDVPLLQEDIIRRCRSMQKPVIVA-TNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSG 407 (453)
Q Consensus 336 I--gRGDLg~e--lg--~e~v~~aqk~Ii~~c~~aGkpvi~a-TqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ 407 (453)
+ ...|+-.. ++ .++.....++.++.++++|..+.+. +.+.+ ...-+...+.+.+.. ...|+|.+.| .
T Consensus 97 i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~~~~~~~g~~~i~l-~ 171 (273)
T cd07941 97 IFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWLVL-C 171 (273)
T ss_pred EEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHHHHHHhCCCCEEEE-e
Confidence 3 23333111 12 2355556688999999999987662 21111 112223334444433 4569999887 5
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q 012928 408 ETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~~~ 428 (453)
+|.=...|.+.-+.++.+..+
T Consensus 172 DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 172 DTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 888889999888877777654
No 325
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=47.36 E-value=89 Score=31.59 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=42.1
Q ss_pred HcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHH
Q 012928 363 SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 363 ~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
....||++. .+.-+ -+|++.+++.|+|+|++++-.+.-+.|++-.+-|+.-++.
T Consensus 187 ~~~vpVivd---------AGIgt---~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 187 NAKIPVIID---------AGIGT---PSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred cCCCcEEEe---------CCcCC---HHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 346888884 44544 5689999999999999999999999997776666665543
No 326
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=47.16 E-value=1.2e+02 Score=23.63 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred CceeecCCCEEEEEee-cCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEe---CCeEEEEEeeCc
Q 012928 177 QPIILKEGQEFNFTIK-RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT---KDLVKCIVVDGG 245 (453)
Q Consensus 177 ~~i~L~~G~~v~lt~~-~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~---~~~v~~~V~ngG 245 (453)
..+.+..|+.+.|... .+.......|.-....+.. ...-.+..+++.-.|.+..+. .+...|.+.|.+
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES-SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee-eeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 4688999999999876 2222223333322222211 223356666788889888764 456899999863
No 327
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.17 E-value=1.4e+02 Score=26.98 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHhCccEEEecCcccCCCC----HHHHHHHHHHHHHHH
Q 012928 385 TRAEVSDIAIAVREGADAVMLSGETAHGKF----PLKAVKVMHTVALRT 429 (453)
Q Consensus 385 trAEv~Dv~nav~~G~D~vmLs~ETA~G~y----P~eaV~~m~~I~~~a 429 (453)
++.-+..+..+...|+|++++..- .+.. +-+.++.++.|+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHh
Confidence 344466677777888888887421 1111 355677777777765
No 328
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=46.08 E-value=3.3e+02 Score=27.51 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCCCCHhhHHHHHhhhhcCCcEEEec---------cc----cCHHHHHHHHHHHHhcCCCceEEEEe------cChhhhc
Q 012928 262 LPSITDKDWEDIKFGVDNQVDFYAVS---------FV----KDAKVVHELKDYLKSCNADIHVIVKI------ESADSIP 322 (453)
Q Consensus 262 lp~ltekD~~DI~~a~~~gvd~I~lS---------fV----~sa~dv~~v~~~L~~~~~~i~IIakI------ET~~gv~ 322 (453)
+-.+|.+|.---..+-+.|+|.|.+. +- -+-+++..--+.+.+.-.+..|++-+ .-.++++
T Consensus 17 i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~ 96 (263)
T TIGR00222 17 IVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALK 96 (263)
T ss_pred EEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHH
Confidence 34457778766666667888888753 10 12222222222233333445555322 2346888
Q ss_pred cHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEE-------EEechhh-hhccCCCCchHH--HH
Q 012928 323 NLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-------VATNMLE-SMIDHPTPTRAE--VS 390 (453)
Q Consensus 323 NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi-------~aTqmLe-SM~~~~~PtrAE--v~ 390 (453)
|...+++. +|++=|--| ..+...+++..+.|.||+ .....+- -.+....+.+++ +.
T Consensus 97 na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~ 164 (263)
T TIGR00222 97 NAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLE 164 (263)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHH
Confidence 88888873 788877532 223455588889999988 2212122 112222233333 66
Q ss_pred HHHHHHHhCccEEEec
Q 012928 391 DIAIAVREGADAVMLS 406 (453)
Q Consensus 391 Dv~nav~~G~D~vmLs 406 (453)
|.-.....|+|+++|-
T Consensus 165 ~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 165 DALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 6666668899999984
No 329
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.07 E-value=37 Score=34.02 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=45.6
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEe
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIg 337 (453)
...+++..++..|+|+|.+..+ +++++.++.+++... .+++ ||=--|+ +|+.++++. +|+|.+|
T Consensus 189 ~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 3456677777889999999765 678888777776543 3333 4444444 889998888 8999885
No 330
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=45.97 E-value=2e+02 Score=30.82 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=71.3
Q ss_pred ccccccccCCEEEEe--------CCeeEEEEEEEeCCeE----------EEEEeeCcEecccceeecCCCccCCCCCCHh
Q 012928 207 DFVNDVEVGDILLVD--------GGMMSLAVKSKTKDLV----------KCIVVDGGELKSRRHLNVRGKSANLPSITDK 268 (453)
Q Consensus 207 ~l~~~vk~Gd~IlID--------DG~I~L~V~ev~~~~v----------~~~V~ngG~L~s~KgVnlp~~~~~lp~ltek 268 (453)
.+.-.++.|+.|++- .|..+|.|.++++..+ +-+-... |+-=|....++|.+..
T Consensus 59 ~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~e-------Glfd~~~k~~lP~~p~- 130 (432)
T TIGR00237 59 RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAE-------GLFDQEYKKPLPHFPK- 130 (432)
T ss_pred CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHC-------CCCCchhcCCCCCCCC-
Confidence 343457889988774 5778888877765431 1111123 3333344444444332
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh---------cCEEEEeCC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---------SDGAMVARG 339 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~---------sDgImIgRG 339 (453)
-|++==..+++-+..+...+.+......+..-==+.+|-....+|+++ .|.|+|+||
T Consensus 131 --------------~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RG 196 (432)
T TIGR00237 131 --------------RVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRG 196 (432)
T ss_pred --------------EEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecC
Confidence 122211235555666656665544333322111122233333333332 489999998
Q ss_pred CccccCCCCCHHH-HHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPL-LQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~-aqk~Ii~~c~~aGkpvi~a 371 (453)
-=+.| ++.. =-..++++..+...|||.|
T Consensus 197 GGs~e----DL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 197 GGSLE----DLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CCCHH----HhhhcCcHHHHHHHHcCCCCEEEe
Confidence 42222 2222 2356677778889999987
No 331
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=45.84 E-value=79 Score=31.18 Aligned_cols=68 Identities=22% Similarity=0.149 Sum_probs=40.7
Q ss_pred HhhhhcCCcEEEeccccCH----HHHHHHHHHHHhcCCCceEEEE--ecChhhhccHHHHHhh-cCEEEEeCCCccccCC
Q 012928 274 KFGVDNQVDFYAVSFVKDA----KVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa----~dv~~v~~~L~~~~~~i~IIak--IET~~gv~NldeI~~~-sDgImIgRGDLg~elg 346 (453)
+.+.+.|+|+|.+. .... .++..+++.-+.. ..++||+. |.|.+ ...+.+.. +|++|+||+=|.-.+.
T Consensus 155 ~~l~~aGad~i~Vd-~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~e---da~e~l~~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 155 LNLVDDGFDGIHVD-AMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDIE---SAKEMLKAGADFVSVARAILKGNVE 229 (231)
T ss_pred HHHHHcCCCEEEEe-eCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCHH---HHHHHHHhCCCeEEEcHhhccCCcC
Confidence 44568999999884 2222 3565565543322 23778873 44433 23333434 8999999987765544
No 332
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=45.71 E-value=4.6e+02 Score=29.00 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred CCHhhHHHHH-hhhhcCCcEEEeccc-cCHHHHHHHHHHHHhcCC----CceEEEEecCh-hh-hccHHHHHhh-----c
Q 012928 265 ITDKDWEDIK-FGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNA----DIHVIVKIESA-DS-IPNLHSIISA-----S 331 (453)
Q Consensus 265 ltekD~~DI~-~a~~~gvd~I~lSfV-~sa~dv~~v~~~L~~~~~----~i~IIakIET~-~g-v~NldeI~~~-----s 331 (453)
+|..++..|. ...+.|+|.|=+.|. .++++...++.+...... ...+.++|-.- .+ -+.++..+++ .
T Consensus 103 fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 103 LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 4677776664 446789999977665 456665555554332111 11112222100 00 0123333322 1
Q ss_pred C--EEEEeCCCccccC--C--CCCHHHHHHHHHHHHHHcCCC-EEEEechhhhhccCCCCchHH---HHHHH-HHHHhCc
Q 012928 332 D--GAMVARGDLGAEL--P--IEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAE---VSDIA-IAVREGA 400 (453)
Q Consensus 332 D--gImIgRGDLg~el--g--~e~v~~aqk~Ii~~c~~aGkp-vi~aTqmLeSM~~~~~PtrAE---v~Dv~-nav~~G~ 400 (453)
+ .++++-.|+-..- + .+++.......++.++++|.. +.+. ...-+|++ +.+++ .+...|+
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~---------~EDa~Rtd~efl~~~~~~a~~~Ga 253 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFG---------CEDGGRSDKEFLCKILGEAIKAGA 253 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEec---------cccccccCHHHHHHHHHHHHhcCC
Confidence 3 3455555554332 2 245666668889999999975 4442 22344444 34443 5567899
Q ss_pred cEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 401 DAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
|.+.| .+|.=...|.+.-+.+..+..+.
T Consensus 254 d~I~l-~DTvG~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 254 TSVGI-ADTVGINMPHEFGELVTYVKANT 281 (503)
T ss_pred CEEEE-ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99988 58988899999988888886543
No 333
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.66 E-value=28 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=23.2
Q ss_pred ecccccccccccCCEEEEeCCeeEEEEEEE
Q 012928 203 VNYDDFVNDVEVGDILLVDGGMMSLAVKSK 232 (453)
Q Consensus 203 v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev 232 (453)
++++. ...+++||+|.+..+++..+|+++
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEE
Confidence 34443 358999999999999999998875
No 334
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=45.38 E-value=1.3e+02 Score=25.66 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=38.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChH----------HHHHHHHHHHHHHhh
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA----------SHQKTIDLVKEYNSQ 153 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e----------~~~~~I~~iR~a~~~ 153 (453)
..+|..+..+...+.+.++.|.+.|++.+++++...+.+ .++++++.++.+.+.
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 139 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA 139 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc
Confidence 344444444444449999999999999999999999987 244455666665543
No 335
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=45.08 E-value=2.6e+02 Score=28.44 Aligned_cols=129 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEec
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTq 373 (453)
+..++.+.++. .++|...+-...-++.+.+-+.. .+.||+. +-.+++++=...-+++++.|++.|..|=-==.
T Consensus 63 ~~~~~~~A~~~--~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG 136 (284)
T PRK09195 63 LAIVSAAAKQY--HHPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred hhhhhccC-----CCCchHHHHHHHHHHHh-CccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 374 MLESMIDH-----PTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 374 mLeSM~~~-----~~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
-+..-... ..-......+...++.. |+|++-.+-.|+.|.| |---...|++|....
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 336
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=44.90 E-value=3.2e+02 Score=27.02 Aligned_cols=86 Identities=13% Similarity=0.248 Sum_probs=50.3
Q ss_pred CceEEEEecCh------hhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhcc
Q 012928 308 DIHVIVKIESA------DSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID 380 (453)
Q Consensus 308 ~i~IIakIET~------~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~ 380 (453)
.++|++=+|+- ++++|..+++++ ++||-|--+. -+...+++.++++.+++--|...-+...
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~ 140 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------------WHIETLQMLTAAAVPVIAHTGLTPQSVN 140 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------------HHHHHHHHHHHcCCeEEEEeCCchhhhh
Confidence 46788888765 444556666665 6888884221 2333566777888877766654332111
Q ss_pred C-------CC-Cc-hHH-HHHHHHHHHhCccEEEe
Q 012928 381 H-------PT-PT-RAE-VSDIAIAVREGADAVML 405 (453)
Q Consensus 381 ~-------~~-Pt-rAE-v~Dv~nav~~G~D~vmL 405 (453)
. .. +. ..| +.+.-.+...|+|++++
T Consensus 141 ~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~ 175 (240)
T cd06556 141 TSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVM 175 (240)
T ss_pred ccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0 00 11 112 55556666789999998
No 337
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.73 E-value=1.1e+02 Score=29.50 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
+..+++.|.+.+..+.+-+.-+.. .-+|+++++.-.|.|+.+-.+ +..+..+-+.|+++++|.+.+
T Consensus 77 a~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345667788888877665543333 346788888878988876332 245677889999999998765
No 338
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.73 E-value=3e+02 Score=26.67 Aligned_cols=122 Identities=9% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHhhhhcCCcEEEecc------c--cCHHHHHHHHHHHHhcCCCceEEEE--------e--cC----hhhhccHHHHH
Q 012928 271 EDIKFGVDNQVDFYAVSF------V--KDAKVVHELKDYLKSCNADIHVIVK--------I--ES----ADSIPNLHSII 328 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSf------V--~sa~dv~~v~~~L~~~~~~i~IIak--------I--ET----~~gv~NldeI~ 328 (453)
+.|+.+.+.|.++|-+.. . -+..++.++++.+.+.|-.+..+.- + -+ .++++.+...+
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 96 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHH
Confidence 566777889999988742 1 2235688888888877654322211 1 01 12344444444
Q ss_pred hh-----cCEEEEeCCCccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhc---cCCCCchHHHHHHHHHH
Q 012928 329 SA-----SDGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMI---DHPTPTRAEVSDIAIAV 396 (453)
Q Consensus 329 ~~-----sDgImIgRGDLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~---~~~~PtrAEv~Dv~nav 396 (453)
.. +..+.+.++..+..-.. +.+....+++...|.+.|..+.+ |.|. .+..+|.+++.++.+.+
T Consensus 97 ~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~~ 171 (275)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALALV 171 (275)
T ss_pred HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHHc
Confidence 33 57888877654422111 23445568888888888877655 3321 23355666766666655
Q ss_pred H
Q 012928 397 R 397 (453)
Q Consensus 397 ~ 397 (453)
.
T Consensus 172 ~ 172 (275)
T PRK09856 172 P 172 (275)
T ss_pred C
Confidence 3
No 339
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=44.58 E-value=2.1e+02 Score=28.97 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE-ech--hhhhccCC
Q 012928 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNM--LESMIDHP 382 (453)
Q Consensus 307 ~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a-Tqm--LeSM~~~~ 382 (453)
..++|...+-...-++.+.+-+.. .+.||+.... +++++=...-+++++.|++.|..|=.= ..+ -|.-....
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~----l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSH----LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 368888888887655444444433 5799997443 566666677799999999999886210 000 00000000
Q ss_pred CCchHHHHHHHHHHH-hCccEEEecCcccCCCCHH----HHHHHHHHHHHHHh
Q 012928 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL----KAVKVMHTVALRTE 430 (453)
Q Consensus 383 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP~----eaV~~m~~I~~~aE 430 (453)
.-......++..++. -|+|++-.|-.|+.|.|+- --.+.|++|.....
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~ 196 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN 196 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC
Confidence 000112455667776 4999999999999999964 45677777777663
No 340
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=44.48 E-value=2.7e+02 Score=29.63 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccC--CCCCHHHHHHHHHHHHHHc
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL--PIEDVPLLQEDIIRRCRSM 364 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~el--g~e~v~~aqk~Ii~~c~~a 364 (453)
+-+++..+++.. +.+||.| |+.+.++...+ +|+|++.-.- |-.+ +.+ -..+..+|..+.. -
T Consensus 241 tW~~i~~lr~~~-----~~pvivK-----gV~~~~dA~~a~~~G~d~I~vsnhG-Gr~~d~~~~-t~~~L~ei~~~~~-~ 307 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLK-----GILHPDDARRAVEAGVDGVVVSNHG-GRQVDGSIA-ALDALPEIVEAVG-D 307 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----cCCCHHHHHHHHHCCCCEEEEcCCC-CcCCCCCcC-HHHHHHHHHHHhc-C
Confidence 446666666543 4667777 33333333332 7888886211 1111 221 1122223322221 2
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecC
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (453)
..|++.. .+.- .-.|++.++..|+|++++..
T Consensus 308 ~~~vi~d---------GGIr---~G~Dv~KALaLGA~~v~iGr 338 (383)
T cd03332 308 RLTVLFD---------SGVR---TGADIMKALALGAKAVLIGR 338 (383)
T ss_pred CCeEEEe---------CCcC---cHHHHHHHHHcCCCEEEEcH
Confidence 4788875 2222 26789999999999999853
No 341
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.42 E-value=2.1e+02 Score=28.65 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=48.5
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHHHHH-HHHhcCCCceEEEEec---ChhhhccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHELKD-YLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~v~~-~L~~~~~~i~IIakIE---T~~gv~NldeI~~~-sDgImIgRG 339 (453)
+.+++.++.|+|+|.+. +.-+.++-.++-+ ..+..+ . ||+-+- |.++++-...-.+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34477788999998762 2234444444433 333333 2 677774 33444444333333 799998654
Q ss_pred CccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 340 DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+.....-+.+...-+.+.. ..|+++.
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 43221111233333344433 7888865
No 342
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=44.37 E-value=1.4e+02 Score=29.91 Aligned_cols=46 Identities=11% Similarity=-0.169 Sum_probs=30.1
Q ss_pred CchHH-HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 384 PTRAE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 384 PtrAE-v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+..| +...-.+...|+|++|+..---...-+-+.+++.+.|+..+
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 33344 44455778889999987644333333567888888888766
No 343
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.37 E-value=3e+02 Score=27.54 Aligned_cols=118 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIED 349 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~ 349 (453)
.+-++.+.+.|+|++.+|=. ..++...+.+.+.+.|-. .|.-+=...--+.+..|++.+.|.+=-.+=.|+.=.-..
T Consensus 107 e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~ 183 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSA 183 (258)
T ss_pred HHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccC
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCc
Q 012928 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (453)
Q Consensus 350 v~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (453)
.+......++.++++ ++|+++ ..+.-+..++..+... .||+
T Consensus 184 ~~~~~~~~i~~vk~~~~~pv~v---------GfGI~~~e~v~~~~~~-ADGv 225 (258)
T PRK13111 184 DAADLAELVARLKAHTDLPVAV---------GFGISTPEQAAAIAAV-ADGV 225 (258)
T ss_pred CCccHHHHHHHHHhcCCCcEEE---------EcccCCHHHHHHHHHh-CCEE
No 344
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=44.31 E-value=47 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=32.3
Q ss_pred cccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 012928 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (453)
Q Consensus 206 ~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~ 248 (453)
.++.+.+++||.|..-.|-.. +|.+++++.+..++-.|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~G-~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGIIG-TVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEE
Confidence 467789999999999887654 567888888888776666655
No 345
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=44.29 E-value=3e+02 Score=29.37 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHH
Q 012928 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (453)
Q Consensus 102 KIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a 150 (453)
+++-|=||..-.+++++.|.+- ++.|-+++...-+-+.++..
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~-------~~~h~s~~F~~~~~~~~~~L 47 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARP-------MVGHRSPDFVGIMKEVLEKL 47 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCC-------CCCCCCHHHHHHHHHHHHHH
Confidence 6888899999999999987655 57799987654444433333
No 346
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=44.02 E-value=1.9e+02 Score=25.91 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHhCCcEEEeecCCCChHHHH---------HHHHHHHHHHh
Q 012928 109 PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQ---------KTIDLVKEYNS 152 (453)
Q Consensus 109 Pss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~---------~~I~~iR~a~~ 152 (453)
+...+.+.++.|.++|.+.+.+++-|++.+.++ +.++.++.+.+
T Consensus 95 ~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 95 PGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred cccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 456689999999999999888888888876654 45666666543
No 347
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=43.95 E-value=1.1e+02 Score=30.13 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.|.+.|..+.|.+.-+... -+|++++++..|.|+.+-. -+..+..+-..|+++++|.+.+
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 445667777788877665443332 2567888888888777621 2346778889999999998875
No 348
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=43.92 E-value=52 Score=25.29 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=23.9
Q ss_pred cccCCEEEEeCCeeEEEEEEEeCCeEEEEEe
Q 012928 212 VEVGDILLVDGGMMSLAVKSKTKDLVKCIVV 242 (453)
Q Consensus 212 vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ 242 (453)
-++|..|.|+| .|..+|.++.++.++.-+.
T Consensus 6 Rk~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 6 RKVGESIVIGD-DIEITVLEISGGQVKLGID 35 (54)
T ss_dssp EETT-EEEETT-TEEEEEEEEETTEEEEEEE
T ss_pred ccCCCEEEECC-CEEEEEEEEcCCEEEEEEE
Confidence 47899999987 8999999999888776543
No 349
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=43.75 E-value=1.3e+02 Score=28.14 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP 346 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg 346 (453)
++++.++..|+|+|..|- +-.++ .++.... +..+++ |+.+++|+..+ +|.+.+-+... .|
T Consensus 67 ~~~~~a~~~Ga~~i~~p~--~~~~~---~~~~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~~---~g 130 (190)
T cd00452 67 EQADAAIAAGAQFIVSPG--LDPEV---VKAANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAEA---VG 130 (190)
T ss_pred HHHHHHHHcCCCEEEcCC--CCHHH---HHHHHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCcc---cC
Confidence 455666788999998773 22333 3333332 345554 55567776654 68888754221 12
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcc
Q 012928 347 IEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (453)
Q Consensus 347 ~e~v~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (453)
+...+.+ +... +.|++.. .+. + ...+..+...|+|++.+++..
T Consensus 131 ----~~~~~~l---~~~~~~~p~~a~---------GGI-~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 131 ----PAYIKAL---KGPFPQVRFMPT---------GGV-S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred ----HHHHHHH---HhhCCCCeEEEe---------CCC-C---HHHHHHHHHCCCEEEEEchhc
Confidence 2222222 2222 3665542 222 3 245668888999999987554
No 350
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=43.75 E-value=60 Score=35.30 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=40.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+.++-+-+|+.-.+.+.++.|+++|+++.-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566667755567899999999999999999999998777777776665
No 351
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.68 E-value=1.3e+02 Score=25.82 Aligned_cols=66 Identities=8% Similarity=0.125 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~ 370 (453)
|.--+..+++++++.|-+..|.+ -++..+++.+.-.|.+++| +.+.+..+++-+.|...|+||.+
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEEE
Confidence 44456678888888776655443 3444566666668999987 68999999999999999999977
Q ss_pred E
Q 012928 371 A 371 (453)
Q Consensus 371 a 371 (453)
-
T Consensus 78 I 78 (99)
T cd05565 78 T 78 (99)
T ss_pred e
Confidence 4
No 352
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.65 E-value=48 Score=33.74 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=45.4
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..+++..+++.|+|.|.+=.. +++++.++.+.+. ... .||-.-|+ +|+.++++. .|.|.+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~---~~~----~leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVA---GRA----ITEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhC---CCc----eEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 345666778999999999764 6788877776663 222 26766665 788888887 89999874
No 353
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=43.58 E-value=1.2e+02 Score=29.10 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEEe
Q 012928 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVAT 372 (453)
Q Consensus 297 ~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~aT 372 (453)
.+++.+.+.|..+.+-+.-|.... +|++++++..|.|+-+- +. +.....+...|.+. ++|.+.++
T Consensus 85 ~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 85 ALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------DN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------CC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 556667777877777665555444 57778887788777651 22 33556788899998 99999874
No 354
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=43.25 E-value=38 Score=36.92 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=41.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 100 ~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+..+=+-+|.+.+..+.++.|+++|+++.=+..+||..+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34444556777778899999999999999999999999887777877775
No 355
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=43.25 E-value=42 Score=36.08 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=41.7
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHH
Q 012928 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (453)
Q Consensus 105 ~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a 150 (453)
+.||-..++.+.+.-|.++|+|+.=|.-|.|+-.+..++|+.||+-
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 4567777888999999999999999999999999999999999974
No 356
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=43.07 E-value=1.1e+02 Score=27.84 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=68.2
Q ss_pred HhhhhcCCcEEEeccccCH------HHHHHHHHHHHhcCCCceEEE-EecC--------------hhhhccHHHHHhh--
Q 012928 274 KFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIV-KIES--------------ADSIPNLHSIISA-- 330 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa------~dv~~v~~~L~~~~~~i~IIa-kIET--------------~~gv~NldeI~~~-- 330 (453)
+++.+.|.++|-+.+.... .++.++++++++.|-.+..+. .... .++++.+.+.+..
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 4566788898887665432 346688888888765433222 1111 1235555655554
Q ss_pred ---cCEEEEeCC--CccccCCC----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCch---HHHHHHHHHHH
Q 012928 331 ---SDGAMVARG--DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR---AEVSDIAIAVR 397 (453)
Q Consensus 331 ---sDgImIgRG--DLg~elg~----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Ptr---AEv~Dv~nav~ 397 (453)
+..+.+..| +....... +.+....+++...|.+.|..+.+ |.+......+. .++.++...+.
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l-----E~~~~~~~~~~~~~~~~~~~l~~~~ 155 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL-----ENHPGPFSETPFSVEEIYRLLEEVD 155 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE-----E-SSSSSSSEESSHHHHHHHHHHHT
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE-----ecccCccccchhhHHHHHHHHhhcC
Confidence 578888877 33323222 34555668888889899966554 44444443333 45555555554
No 357
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=42.63 E-value=4.5e+02 Score=28.01 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=71.8
Q ss_pred CHhhHHHHH-hhhhcCCcEEEeccc---------------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh
Q 012928 266 TDKDWEDIK-FGVDNQVDFYAVSFV---------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (453)
Q Consensus 266 tekD~~DI~-~a~~~gvd~I~lSfV---------------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~ 329 (453)
++.|+.++. ..-+.|+|+|-+.+- ++++.+.++-+.+.+. .+++|++||= + -+.++.++++
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia~ 201 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPAR 201 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHHH
Confidence 567776664 344568999877552 3444455544444332 3689999996 2 2334555555
Q ss_pred h-----cCEEEEe-----CC--Cccc-----------cCC-C--CCH-HHHHHHHHHHHHHc------CCCEEEEechhh
Q 012928 330 A-----SDGAMVA-----RG--DLGA-----------ELP-I--EDV-PLLQEDIIRRCRSM------QKPVIVATNMLE 376 (453)
Q Consensus 330 ~-----sDgImIg-----RG--DLg~-----------elg-~--e~v-~~aqk~Ii~~c~~a------Gkpvi~aTqmLe 376 (453)
+ +|||.+- +- |+-. ..| + +.+ +.+...+-+.+++. +.|++-.
T Consensus 202 aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGv----- 276 (385)
T PLN02495 202 VALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGI----- 276 (385)
T ss_pred HHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEE-----
Confidence 3 6877652 11 1110 011 1 112 33333333333332 4665543
Q ss_pred hhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC
Q 012928 377 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (453)
Q Consensus 377 SM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (453)
.+.-+ ..|++.+++.|||+|.+. |+.=.+
T Consensus 277 ----GGI~s---~~Da~e~i~aGAs~VQv~--Ta~~~~ 305 (385)
T PLN02495 277 ----GGVET---GGDAAEFILLGADTVQVC--TGVMMH 305 (385)
T ss_pred ----CCCCC---HHHHHHHHHhCCCceeEe--eeeeec
Confidence 33333 568999999999999986 444444
No 358
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=42.53 E-value=1.4e+02 Score=27.80 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
...+++.|.+.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +..+..+...|.+. ++|.+.+
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEE
Confidence 45567778888887776654444433 6788888778877765222 34556677777776 9999886
No 359
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=42.49 E-value=93 Score=30.07 Aligned_cols=56 Identities=27% Similarity=0.454 Sum_probs=44.4
Q ss_pred cEEEeccc-ccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEecccceeecC
Q 012928 199 DTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (453)
Q Consensus 199 ~~I~v~~~-~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~-------ngG~L~s~KgVnlp 256 (453)
..+.+..+ .+.+.+++||.|-+|. ++|+|.++.++.+.+-+. +=|.++.+.-||+.
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 34666665 6778999999999987 889999999888877764 34677788888885
No 360
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=42.47 E-value=1.3e+02 Score=33.32 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=90.3
Q ss_pred ecccceeecCCCccCCCCCCHhhH-HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHH
Q 012928 247 LKSRRHLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLH 325 (453)
Q Consensus 247 L~s~KgVnlp~~~~~lp~ltekD~-~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~Nld 325 (453)
|++ .+++|=+.+. +|..|. ..|..+-..+-.+-.+.|-+....+..+.+++ +-++.++.--...++-.-+.
T Consensus 78 i~~--~~~iPVv~i~---~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l---~~~i~~~~~~~~~e~~~~v~ 149 (538)
T PRK15424 78 LKS--RLSVPVILIK---PSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTF---NLRIEQRSYVTEEDARGQIN 149 (538)
T ss_pred HHh--hCCCCEEEec---CCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEecCHHHHHHHHH
Confidence 444 4777777764 377775 66777766677777778877777787777777 44555554444444555555
Q ss_pred HHHhhcCEEEEeCC---CccccCCC--------CCHHHHHHHHHHHHHHcCCCE--------EEEechhhhhccCCCCch
Q 012928 326 SIISASDGAMVARG---DLGAELPI--------EDVPLLQEDIIRRCRSMQKPV--------IVATNMLESMIDHPTPTR 386 (453)
Q Consensus 326 eI~~~sDgImIgRG---DLg~elg~--------e~v~~aqk~Ii~~c~~aGkpv--------i~aTqmLeSM~~~~~Ptr 386 (453)
++.+.--.++||.+ |++.+.|. +.+..+-++.++.++.....- ..+..-++.|+.. .|..
T Consensus 150 ~lk~~G~~~vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG~-S~~m 228 (538)
T PRK15424 150 ELKANGIEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLGQ-SPQM 228 (538)
T ss_pred HHHHCCCCEEEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHHHHHHHhhhhhccchhhhhccccchhheeeC-CHHH
Confidence 55443223444543 55556655 334444444444333211110 1111123333332 2333
Q ss_pred HHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHH
Q 012928 387 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (453)
Q Consensus 387 AEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (453)
.++..-+..+...---||+.||+=.||- ...+.++.-
T Consensus 229 ~~~~~~i~~~A~s~~pVLI~GE~GTGKe--~~A~~IH~~ 265 (538)
T PRK15424 229 EQVRQTILLYARSSAAVLIQGETGTGKE--LAAQAIHRE 265 (538)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCCHH--HHHHHHHHh
Confidence 3333334444444557999999999994 344444443
No 361
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=42.40 E-value=29 Score=31.75 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH
Q 012928 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE 388 (453)
-...+++...+.|+|+++||. .+|.|..-|
T Consensus 64 ~~~evi~~I~~~G~PviVAtD------V~p~P~~V~ 93 (138)
T PF04312_consen 64 SRSEVIEWISEYGKPVIVATD------VSPPPETVK 93 (138)
T ss_pred CHHHHHHHHHHcCCEEEEEec------CCCCcHHHH
Confidence 357888899999999999987 566676544
No 362
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.83 E-value=1.8e+02 Score=28.05 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 351 ~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
..+...+++.++++|+++++-|- . + ..+...++..|+|+++-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv--------n--~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV--------N--D---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC--------C--C---HHHHHHHHHcCCCEEEc
Confidence 34567899999999999998762 1 1 23456788889999874
No 363
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.79 E-value=1.4e+02 Score=26.10 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 292 a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.==+...+++.+..|.++.|.|.=|+. +.+-+...|.+++| +.+.+.-+++-+.+...|+||-+.
T Consensus 15 SlLV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlG----------PQv~y~~~~~~~~~~~~giPV~vI 79 (102)
T COG1440 15 SLLVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLG----------PQVRYMLKQLKEAAEEKGIPVEVI 79 (102)
T ss_pred HHHHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEEC----------hHHHHHHHHHHHHhcccCCCeEEe
Confidence 334566778888888888888876654 44555578999998 688999999999999999998763
No 364
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=41.69 E-value=2.5e+02 Score=28.31 Aligned_cols=47 Identities=38% Similarity=0.508 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecC
Q 012928 351 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (453)
Q Consensus 351 ~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (453)
+..-.+++++.++. ++|+.+ + -.|...++.+++. +...|+|++.+++
T Consensus 153 ~~~~~~iv~~v~~~~~~Pv~v---------K-l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 153 PELVEEICRWVREAVKIPVIA---------K-LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred HHHHHHHHHHHHHhcCCCeEE---------E-CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 55567777777654 689887 2 2354445666666 5667999998653
No 365
>PLN02979 glycolate oxidase
Probab=41.67 E-value=2.4e+02 Score=29.97 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcC-
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ- 365 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aG- 365 (453)
+-+|+..+++.- +.+||+| +|.+.++...+ +|+|.++-.-=.. ....+.....+.+...+.+
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq---ld~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ---LDYVPATISALEEVVKATQG 277 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC---CCCchhHHHHHHHHHHHhCC
Q ss_pred -CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 366 -KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 366 -kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.|++. ..+.-+ -.|++.++..|+|++++.
T Consensus 278 ~~~Vi~---------dGGIr~---G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 278 RIPVFL---------DGGVRR---GTDVFKALALGASGIFIG 307 (366)
T ss_pred CCeEEE---------eCCcCc---HHHHHHHHHcCCCEEEEc
No 366
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.65 E-value=1.3e+02 Score=28.90 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgRG 339 (453)
+++..+.+.|+|+|.+ |-...-....++++......++++++- -|+ +|+.+.+++ +|++-++.+
T Consensus 115 ~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 115 TEAFAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehH
Confidence 4466677899999987 332222333344433322224667652 233 889999988 899888744
No 367
>PLN02741 riboflavin synthase
Probab=41.36 E-value=1.2e+02 Score=29.16 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=43.3
Q ss_pred EEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEecccceeecC
Q 012928 200 TVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (453)
Q Consensus 200 ~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~-------ngG~L~s~KgVnlp 256 (453)
.+.+..+.+.+.+++||-|-+|. ++|+|.+++++.+.+-+. +=|.++.+.-||+.
T Consensus 24 ~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 24 DLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 45555556778999999999987 899999999988887775 34677777778874
No 368
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=41.35 E-value=2.4e+02 Score=28.09 Aligned_cols=136 Identities=20% Similarity=0.274 Sum_probs=75.6
Q ss_pred hhcCCcEEEeccc--cCHHHHHH----HHHHHHhcCCCceEEEEe----cChhhhc--cHHHHHhh--cCEEEEeCCCcc
Q 012928 277 VDNQVDFYAVSFV--KDAKVVHE----LKDYLKSCNADIHVIVKI----ESADSIP--NLHSIISA--SDGAMVARGDLG 342 (453)
Q Consensus 277 ~~~gvd~I~lSfV--~sa~dv~~----v~~~L~~~~~~i~IIakI----ET~~gv~--NldeI~~~--sDgImIgRGDLg 342 (453)
...|+|||=+.+- .+.++..+ +...+++...+..++|-. +...++. .+.++++. .||+|+.-++=.
T Consensus 77 a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kd 156 (235)
T PF04476_consen 77 AATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKD 156 (235)
T ss_pred HhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence 4579999877664 45444332 223344445566666543 2222333 23344443 699999755432
Q ss_pred ccCCCCCHH-HHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec------CcccCCCCH
Q 012928 343 AELPIEDVP-LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS------GETAHGKFP 415 (453)
Q Consensus 343 ~elg~e~v~-~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs------~ETA~G~yP 415 (453)
---=++.+. .....++..||++|..+.+|.- -+..|+......+.|.+=.. ++-..|.-=
T Consensus 157 g~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGS-------------L~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id 223 (235)
T PF04476_consen 157 GGSLFDHLSEEELAEFVAQARAHGLMCALAGS-------------LRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRID 223 (235)
T ss_pred CCchhhcCCHHHHHHHHHHHHHccchhhcccc-------------CChhHHHHHHhcCCCEEEechhhCCCCCcCccccC
Confidence 111111222 2347899999999999998732 13556666667777765332 234455444
Q ss_pred HHHHHHHHHH
Q 012928 416 LKAVKVMHTV 425 (453)
Q Consensus 416 ~eaV~~m~~I 425 (453)
-+.|+.+++.
T Consensus 224 ~~~V~~lr~~ 233 (235)
T PF04476_consen 224 PELVAALRAL 233 (235)
T ss_pred HHHHHHHHHh
Confidence 4666666554
No 369
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=41.16 E-value=2.3e+02 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 353 aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
+..++++.++++|+++++-|- .+ ..+.-.++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n~---~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------ND---PEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------CC---HHHHHHHHHCCCCEEec
Confidence 568899999999999988652 11 34455778899999874
No 370
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=40.99 E-value=2.2e+02 Score=28.69 Aligned_cols=46 Identities=20% Similarity=0.037 Sum_probs=31.0
Q ss_pred CchHH-HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 384 PTRAE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 384 PtrAE-v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+-.| +.-.-.+-..|+|++|+..=--...-+-+.+++.+.|+..+
T Consensus 79 ~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 79 LNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred chHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 34444 44455566779999999754333333478889999999877
No 371
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=40.96 E-value=60 Score=31.65 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHH
Q 012928 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (453)
+.....++..|+|.++...--....-|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 445778999999999998888888889999998887654
No 372
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=40.90 E-value=93 Score=30.73 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCcEEEeecCCC--------ChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCee
Q 012928 115 EMIWKLAEEGMNVARLNMSHG--------DHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEV 170 (453)
Q Consensus 115 e~i~~Li~aGmnvaRiNfSHg--------~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkI 170 (453)
+..++|+++|.++.=+|+--. ..++++++...|+.+.+..+ +.|.+|+.=|++
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~---~piSIDT~~~~v 88 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD---VPISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC---CeEEEeCCcHHH
Confidence 345779999999999997544 45777888888888765543 568889877764
No 373
>PRK01712 carbon storage regulator; Provisional
Probab=40.83 E-value=69 Score=25.58 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.2
Q ss_pred ccccCCEEEEeCCeeEEEEEEEeCCeEEEE
Q 012928 211 DVEVGDILLVDGGMMSLAVKSKTKDLVKCI 240 (453)
Q Consensus 211 ~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~ 240 (453)
.-++|+.|.|+| .|..+|.++.++.|+.-
T Consensus 5 tRk~gE~I~Igd-~I~I~V~~i~~~~VrlG 33 (64)
T PRK01712 5 TRKVGESLMIGD-DIEVTVLGVKGNQVRIG 33 (64)
T ss_pred EccCCCEEEeCC-CEEEEEEEEeCCEEEEE
Confidence 348899999999 69999999988877654
No 374
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=40.77 E-value=84 Score=31.73 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=41.3
Q ss_pred HHHHhhhhcCCcEEEecccc------CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~------sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGD 340 (453)
++.+.+.+.|+|+|.++--. ....+..+.+..+....+++||+ --|+.+-.+++++ +|++++||.=
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia----~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL----DGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE----eCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 44566678999999885311 12233334443333334577776 3466666666665 7999999965
Q ss_pred c
Q 012928 341 L 341 (453)
Q Consensus 341 L 341 (453)
|
T Consensus 260 l 260 (299)
T cd02809 260 L 260 (299)
T ss_pred H
Confidence 5
No 375
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=40.72 E-value=3.4e+02 Score=26.13 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHh-CccEEEecCcccCCCCHHHH
Q 012928 361 CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPLKA 418 (453)
Q Consensus 361 c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~yP~ea 418 (453)
++..+.|++.+ .+.-+. .|+..+... |+|++|+..----|.+..+.
T Consensus 189 ~~~~~~pvia~---------GGi~~~---~di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 189 SSAVNIPVIAS---------GGAGKP---EHFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred HhhCCCCEEEe---------CCCCCH---HHHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 33468998885 334443 345555654 99999998776688886554
No 376
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=40.68 E-value=2.1e+02 Score=28.72 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHhhhhcCCcEEEec------cccCHHHHHHH-HHHHHhcCCCceEEEEecChhhhccHHHHHhh-----cCEEEEeC
Q 012928 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 338 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lS------fV~sa~dv~~v-~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-----sDgImIgR 338 (453)
+.+++.++.|+|+|.+. +--|.++-.++ +...+..+.++.||+-+-. +.+..-+.++. +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 44577889999998763 22344444443 3444555667889988742 24333333332 68998865
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 339 GDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
--+.. ..-+.+...-+.| |.+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 43311 1112333334444 44567888876
No 377
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.56 E-value=4.1e+02 Score=28.04 Aligned_cols=88 Identities=16% Similarity=0.231 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEech
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 374 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqm 374 (453)
+..++++.++ ..+.++.-+-+.+.++-+.+ .+|.+-||.+++.. ..+++++.+.||||++.|.
T Consensus 154 l~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G- 216 (352)
T PRK13396 154 LELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG- 216 (352)
T ss_pred HHHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC-
Confidence 3334444433 35678887777777755554 47999998666532 3447778889999999643
Q ss_pred hhhhccCCCCchHHHHHHHHHHHh-CccEEEec
Q 012928 375 LESMIDHPTPTRAEVSDIAIAVRE-GADAVMLS 406 (453)
Q Consensus 375 LeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs 406 (453)
..+|-.|+...+..+.. |.+-++|.
T Consensus 217 -------~~~t~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 217 -------MAATIDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 34577888888877764 66556664
No 378
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=40.50 E-value=3.8e+02 Score=27.77 Aligned_cols=51 Identities=27% Similarity=0.378 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHc--------CCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEecCcc
Q 012928 351 PLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (453)
Q Consensus 351 ~~aqk~Ii~~c~~a--------Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 409 (453)
+....++++++++. .+|+++= -+|..+..++.+++. +...|+|++.+.+-+
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK--------LsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLVK--------IAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEEE--------eCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 44555566655543 2898872 456666667777777 667899999998744
No 379
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=40.44 E-value=3.3e+02 Score=26.62 Aligned_cols=95 Identities=24% Similarity=0.239 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh----h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHc
Q 012928 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS----A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM 364 (453)
Q Consensus 290 ~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~----~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~a 364 (453)
++++.+.++-+.+.+. +++|.+||=.--- ++..++++ . +|++-+--+.-+ +...+ ..++..+ .
T Consensus 123 ~~p~~l~eiv~avr~~--~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~-~ 190 (233)
T cd02911 123 KDPERLSEFIKALKET--GVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS-T 190 (233)
T ss_pred CCHHHHHHHHHHHHhc--CCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-C
Confidence 3455555555555543 6778888832110 22223322 2 676544211111 11122 2233333 5
Q ss_pred CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCc
Q 012928 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 365 Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (453)
++|+|. ++..-+ ..|+..++..|+|+||+...
T Consensus 191 ~ipVIg---------nGgI~s---~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 ELFIIG---------NNSVTT---IESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCEEEE---------ECCcCC---HHHHHHHHHcCCCEEEEcCC
Confidence 788775 344444 45666778889999999743
No 380
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=40.26 E-value=3.1e+02 Score=27.99 Aligned_cols=129 Identities=15% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCC----EE
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKP----VI 369 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkp----vi 369 (453)
+..++.+.++. .++|...+-....++.+.+-+.. .+.||+. +-.+|+++=...-+++++.|++.|.. ++
T Consensus 63 ~~~~~~~a~~~--~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG 136 (286)
T PRK12738 63 YALCSAYSTTY--NMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAELG 136 (286)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Q ss_pred EEechhhhhccCCCCc-hHHHHHHHHHHHh-CccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 370 VATNMLESMIDHPTPT-RAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 370 ~aTqmLeSM~~~~~Pt-rAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
.-..-=+......... .....++..++.. |+|++-.+-.|+.|.| |---...|++|....
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh
No 381
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=40.19 E-value=2e+02 Score=28.21 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=66.3
Q ss_pred EEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHH----------
Q 012928 284 YAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLL---------- 353 (453)
Q Consensus 284 I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~a---------- 353 (453)
|.+=-..+.++...+.+.|-+.|-. .|=.-.-|+.+.+-+.++.+....+.||-|=. +..+.+..+
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEEC
Confidence 3444456777777766666554432 12245678888888888888776777776632 122222222
Q ss_pred ---HHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 354 ---QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 354 ---qk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
-.++++.|+.+|.|.+= +.-| .+++..+.+.|++.+=+
T Consensus 92 P~~~~ev~~~a~~~~ip~~P-----------G~~T---ptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 92 PGLNPEVAKAANRYGIPYIP-----------GVAT---PTEIMAALELGASALKF 132 (211)
T ss_pred CCCCHHHHHHHHhCCCcccC-----------CCCC---HHHHHHHHHcChhheee
Confidence 37899999999999752 1122 33466889999998765
No 382
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=40.12 E-value=4.4e+02 Score=27.26 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCCHhhHHHHHhh-hhcCCcEEEe---------cccc---CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh-
Q 012928 264 SITDKDWEDIKFG-VDNQVDFYAV---------SFVK---DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS- 329 (453)
Q Consensus 264 ~ltekD~~DI~~a-~~~gvd~I~l---------SfV~---sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~- 329 (453)
.+|..++..|..+ .+.|+|.|=+ ||.. ...+...++...... .+.++.+.+-- |.-+.+++-.
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~-~~~~~~~ll~p--g~~~~~dl~~a 96 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV-KRAKVAVLLLP--GIGTVHDLKAA 96 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC-CCCEEEEEecc--CccCHHHHHHH
Confidence 3467777666444 5689998866 3321 123444444444332 23444433311 1223333322
Q ss_pred --h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEe
Q 012928 330 --A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVML 405 (453)
Q Consensus 330 --~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmL 405 (453)
. .|.|-|+ ....+.. .-++.++.+++.|..+.+. +..+ ..-+..++.+.+.. ...|+|++-+
T Consensus 97 ~~~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s----~~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 97 YDAGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS----HMTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred HHCCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc----cCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 2 5776664 2223333 3578899999999887653 2122 22344566666655 4469999988
Q ss_pred cCcccCCCCHHHHHHHHHHHHHHH
Q 012928 406 SGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 406 s~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+|+=..+|.+.-+....+..+.
T Consensus 163 -~DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 163 -VDSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred -ccCCCCCCHHHHHHHHHHHHHhC
Confidence 48888899988877777776544
No 383
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=39.85 E-value=93 Score=32.46 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=59.8
Q ss_pred HHHHHhhhhcCCcEEEeccc---------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEE
Q 012928 270 WEDIKFGVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV---------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImI 336 (453)
.+|.+.+.+.|+|+|.+|-. .+..-+.++++++.+.+.++.||+ -.||.|=.+|+++ +|+++|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV----DGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE----eCCCCCHHHHHHHHHcCCCEEEE
Confidence 46667778999999998752 223335555665545555677775 4577777777776 799999
Q ss_pred eCCCccccC--CCCC----HHHHHHHHHHHHHHcCCC
Q 012928 337 ARGDLGAEL--PIED----VPLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 337 gRGDLg~el--g~e~----v~~aqk~Ii~~c~~aGkp 367 (453)
||.=|-.-. |-+. +..+++++-......|..
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 987664222 3322 334456666666666643
No 384
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=39.68 E-value=4.3e+02 Score=28.68 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred hccHHHHHhh----cCEEEEeCCCcccc------CCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHH
Q 012928 321 IPNLHSIISA----SDGAMVARGDLGAE------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390 (453)
Q Consensus 321 v~NldeI~~~----sDgImIgRGDLg~e------lg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~ 390 (453)
..+++|+..+ +|.+.+|+-.=+.. +|++. .+.+ +.....|++.. . --+..
T Consensus 397 ~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~----~~~~---~~~~~~Pv~ai---------G-GI~~~--- 456 (502)
T PLN02898 397 CKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDG----LREV---CEASKLPVVAI---------G-GISAS--- 456 (502)
T ss_pred CCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHH----HHHH---HHcCCCCEEEE---------C-CCCHH---
Confidence 3566666554 69999886522211 12211 2222 44567887763 1 22322
Q ss_pred HHHHHHHhCcc---EEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 391 DIAIAVREGAD---AVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 391 Dv~nav~~G~D---~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
++..+...|+| ++.+.+.-..=..|.++++.+++++.+..
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~ 499 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEAL 499 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHh
Confidence 23455666777 99988776555789999999999887654
No 385
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.63 E-value=74 Score=31.23 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEech
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 374 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqm 374 (453)
..+++.+.+.|..+.|-+.-+... -+|+++++.. .|.|+.+-. -...+..+.+.|++.++|+|.+.
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD----------~~~~k~~L~~~c~~~~ip~I~s~-- 134 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAID----------SIRAKVALIAYCRKRKIPVISSM-- 134 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCC----------CHHHHHHHHHHHHHhCCCEEEEe--
Confidence 456777888787766554433222 2577777743 677776522 23456678899999999998751
Q ss_pred hhhhccCCCCchHHHHHH
Q 012928 375 LESMIDHPTPTRAEVSDI 392 (453)
Q Consensus 375 LeSM~~~~~PtrAEv~Dv 392 (453)
+.-....||+-++.|+
T Consensus 135 --g~g~~~dp~~i~i~di 150 (231)
T cd00755 135 --GAGGKLDPTRIRVADI 150 (231)
T ss_pred --CCcCCCCCCeEEEccE
Confidence 1223457898788877
No 386
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=39.33 E-value=1.3e+02 Score=33.01 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=90.8
Q ss_pred CeEEEEEeeCcEecccceeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEec---cccCHHHHHHHHHHHHhcCCCceE
Q 012928 235 DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHV 311 (453)
Q Consensus 235 ~~v~~~V~ngG~L~s~KgVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lS---fV~sa~dv~~v~~~L~~~~~~i~I 311 (453)
+.++.++-.|. |+..|=.+|+..+ |+ .+..+.- .+.|++.|.-+ -+.+.+|+.++-.-|++.+..-+|
T Consensus 236 ~~ieIKiaQGA--KPGeGG~Lpg~KV-----~~-~IA~~R~-~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 236 DAIEIKIAQGA--KPGEGGQLPGEKV-----TP-EIAKTRG-SPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKI 306 (485)
T ss_pred ceEEEEeccCC--CCCCCCCCCCccC-----CH-HHHHhcC-CCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeE
Confidence 34455554444 2344445666664 43 3343332 45677766543 346788888887778888876669
Q ss_pred EEEecChhhhccHHH-HHhh-cCEEEEeCCCccccCCC---------C---CHHHHHHHHHHHHHHcCCCEEEEechhhh
Q 012928 312 IVKIESADSIPNLHS-IISA-SDGAMVARGDLGAELPI---------E---DVPLLQEDIIRRCRSMQKPVIVATNMLES 377 (453)
Q Consensus 312 IakIET~~gv~Nlde-I~~~-sDgImIgRGDLg~elg~---------e---~v~~aqk~Ii~~c~~aGkpvi~aTqmLeS 377 (453)
.+|+=...++.-+.. .+++ +|.|.|.-.|=|.-... + -++.+++.+...-.. .+..+.+
T Consensus 307 ~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~------ 379 (485)
T COG0069 307 SVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIA------ 379 (485)
T ss_pred EEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEe------
Confidence 999977777766665 4444 89999987665443321 1 244555554444333 4555554
Q ss_pred hccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 378 MIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 378 M~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
....-| -.||+-+++.|+|.+=.
T Consensus 380 --~Ggl~T---g~DVaka~aLGAd~v~~ 402 (485)
T COG0069 380 --DGGLRT---GADVAKAAALGADAVGF 402 (485)
T ss_pred --cCCccC---HHHHHHHHHhCcchhhh
Confidence 233333 56899999999998754
No 387
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=39.24 E-value=61 Score=32.42 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeee
Q 012928 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRS 172 (453)
Q Consensus 114 ~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkIRt 172 (453)
.+..++|+++|.++.=+|+.-...+++.++...|+.+.+..+ +.|.+|+.-|++--
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~---~plsIDT~~~~v~e 83 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD---VPLCIDSPNPAAIE 83 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC---CCEEEeCCCHHHHH
Confidence 345667899999999999986666778888888888876543 55788998887643
No 388
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=39.04 E-value=65 Score=32.83 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=37.4
Q ss_pred hHHHHHhhhhcCCcEEEecc------ccCHHHHHHHHHHHHhcCCCceEEEE--ecChhhhccHHHHHhh--cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSF------VKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA--SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSf------V~sa~dv~~v~~~L~~~~~~i~IIak--IET~~gv~NldeI~~~--sDgImIgR 338 (453)
-.+-++...+.|+++|.+-- -+...+...++...+.. .++||+. |.|.+- +.++++. +||+||||
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d---~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPED---AERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHH---HHHHCCCH-SSEEEESH
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHH---HHHHHHhcCCcEEEEch
Confidence 34555666789999998742 12245666666555443 3888874 444432 2333333 89999999
Q ss_pred CCcc
Q 012928 339 GDLG 342 (453)
Q Consensus 339 GDLg 342 (453)
|=|+
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 8664
No 389
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=38.96 E-value=82 Score=33.27 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHhhhhcCCcEEEecccc------CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG 339 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~------sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRG 339 (453)
.+|.+.+.+.|+|+|.+|--- .+..+..+.+.....+.++.||+- -||.+-.+|+++ +|++||||-
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 466777789999999877421 223445555554444556777763 466666777665 799999997
Q ss_pred Cccc-cC-CCC---C-HHHHHHHHHHHHHHcCCC
Q 012928 340 DLGA-EL-PIE---D-VPLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 340 DLg~-el-g~e---~-v~~aqk~Ii~~c~~aGkp 367 (453)
=|-. .. |-+ + +...+.++-....-.|..
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~ 348 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQ 348 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5532 12 322 2 234455555555555543
No 390
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=38.95 E-value=60 Score=28.85 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=36.0
Q ss_pred hhccHHHHHhh--cC--EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 320 SIPNLHSIISA--SD--GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 320 gv~NldeI~~~--sD--gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
++.++++.++. .| -|++|-.|+....+.++...-.+++++.+++.+.++++.+
T Consensus 52 ~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 52 GLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34445444432 45 5666777876555666677777899999999998888754
No 391
>PLN02417 dihydrodipicolinate synthase
Probab=38.78 E-value=2.7e+02 Score=27.84 Aligned_cols=41 Identities=12% Similarity=-0.033 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
+.-.-.+-..|+|++|+..=.-...-+-+.++....|+...
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 55556677889999998644322222467788888887754
No 392
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=38.67 E-value=1.8e+02 Score=23.42 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred ceeecCCCEEEEEeec-CCCCccEEEecccccccccccCCEEEEeCCeeEE-EEE-----EEeCCeEEEEEeeC--cEec
Q 012928 178 PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSL-AVK-----SKTKDLVKCIVVDG--GELK 248 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L-~V~-----ev~~~~v~~~V~ng--G~L~ 248 (453)
...+.+|+.++|...- +.-.....|.-....+..-..+....+.+|.+.+ .|. ..+.+.-.|.+.|+ |.+.
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 3556789999988762 1112233333222222211112244456665443 332 22455789999998 7776
Q ss_pred cc
Q 012928 249 SR 250 (453)
Q Consensus 249 s~ 250 (453)
++
T Consensus 88 s~ 89 (95)
T cd05722 88 SR 89 (95)
T ss_pred Ee
Confidence 54
No 393
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=38.45 E-value=2.2e+02 Score=28.60 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHhhhhcCCcEEEe-cccc-----------CHHHHHHHHHHHHhcCCCceEEEEecCh----hhhccHHHHHhh---
Q 012928 270 WEDIKFGVDNQVDFYAV-SFVK-----------DAKVVHELKDYLKSCNADIHVIVKIESA----DSIPNLHSIISA--- 330 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~l-SfV~-----------sa~dv~~v~~~L~~~~~~i~IIakIET~----~gv~NldeI~~~--- 330 (453)
.+.|..|...|+|||-+ .|+. ++.++...|+.| +.+++|++-|--. .+-..++|++..
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 45677777889999877 4432 233444444444 5689999866332 233678887763
Q ss_pred ---cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 331 ---SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 331 ---sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
+||+++.----|.+..++.+. ++-. .....|+++++
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~----~vr~--~~~~~Pvllgg 207 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLK----LAKE--TVKDTPVLAGS 207 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHH----HHHh--ccCCCeEEEEC
Confidence 699999744334333333222 2111 12357999974
No 394
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=38.25 E-value=1e+02 Score=30.78 Aligned_cols=53 Identities=36% Similarity=0.391 Sum_probs=41.5
Q ss_pred HcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHH
Q 012928 363 SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (453)
Q Consensus 363 ~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (453)
++..|+|+ ..+.-+ -+|.+.+.+.|+|+|+++.-.|.-+.|+.--+.|+.-+.
T Consensus 180 ~a~VPviV---------DAGiG~---pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 180 EADVPVIV---------DAGIGT---PSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred hCCCCEEE---------eCCCCC---hhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 34899998 444444 456789999999999999888899999887777766554
No 395
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.11 E-value=54 Score=32.96 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
+..+++..+++.|+|+|.+..+ +++++.++.+.+. .++++. -.-|+ +|+.++++. +|+|.++.
T Consensus 190 ~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~----AiGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLE----ASGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEE----EECCCCHHHHHHHHHcCCCEEEEEe
Confidence 3456777778899999999876 4677766666542 234433 33444 788998887 89998874
No 396
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=38.11 E-value=76 Score=34.45 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=38.6
Q ss_pred hhHHHHHhhhhcCCcEEEeccccCHH----HHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh---hcCEEEEeCCC
Q 012928 268 KDWEDIKFGVDNQVDFYAVSFVKDAK----VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---ASDGAMVARGD 340 (453)
Q Consensus 268 kD~~DI~~a~~~gvd~I~lSfV~sa~----dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~---~sDgImIgRGD 340 (453)
++.++++.+++.|++.|++.. |+-. |+....+++...-.++.+|+ |+ |+.+.+++.. .+||++||-.-
T Consensus 167 h~~~El~~al~~~a~iiGiNn-RdL~t~~vd~~~~~~l~~~ip~~~~~vs--eS--GI~t~~d~~~~~~~~davLiG~~l 241 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINN-RNLRDLSIDLNRTRELAPLIPADVIVIS--ES--GIYTHAQVRELSPFANGFLIGSSL 241 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEECHHH
Confidence 456777778888999888763 2222 22222222322223444454 32 5555555433 37999998554
Q ss_pred ccc
Q 012928 341 LGA 343 (453)
Q Consensus 341 Lg~ 343 (453)
+..
T Consensus 242 m~~ 244 (454)
T PRK09427 242 MAE 244 (454)
T ss_pred cCC
Confidence 433
No 397
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.04 E-value=1.6e+02 Score=24.92 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=44.6
Q ss_pred CceeecCCCEEEEEeec--CCCCccEEEecccccccccccCCEEEEe-CCeeEEEEEEE-eCC-eEEEEEeeCc
Q 012928 177 QPIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVD-GGMMSLAVKSK-TKD-LVKCIVVDGG 245 (453)
Q Consensus 177 ~~i~L~~G~~v~lt~~~--~~~~~~~I~v~~~~l~~~vk~Gd~IlID-DG~I~L~V~ev-~~~-~v~~~V~ngG 245 (453)
.++.+.+|+.+.|.... +.-.....|++.. ...+....+|.++ +|.+.+.=.+. +.+ .-.|.+.+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 36889999999999873 3333455666432 2234457788886 69887764444 333 5899988765
No 398
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=38.02 E-value=62 Score=28.41 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.0
Q ss_pred cccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEecccc
Q 012928 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRR 251 (453)
Q Consensus 206 ~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~s~K 251 (453)
.++...+++||+|..-.|-+. +|.+++++.+..++-.|-.++=.|
T Consensus 33 ~~m~~~Lk~GD~VvT~gGi~G-~V~~I~d~~v~leia~gv~i~~~r 77 (109)
T PRK05886 33 IDLHESLQPGDRVHTTSGLQA-TIVGITDDTVDLEIAPGVVTTWMK 77 (109)
T ss_pred HHHHHhcCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEEEEh
Confidence 357789999999999887665 467788888888876666666333
No 399
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=37.90 E-value=35 Score=35.09 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCEEE--------Eechhhhhcc-CC---CCchHHHHHHHHHHHhCccEEEecCcccCCC--CHHHHHHH
Q 012928 356 DIIRRCRSMQKPVIV--------ATNMLESMID-HP---TPTRAEVSDIAIAVREGADAVMLSGETAHGK--FPLKAVKV 421 (453)
Q Consensus 356 ~Ii~~c~~aGkpvi~--------aTqmLeSM~~-~~---~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~--yP~eaV~~ 421 (453)
..+.+|++.|++|+- ..+.++.|.. .. .|.-..+.++ |...|.|+.++.-||..+. ..-..+..
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~i--a~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEI--AKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHH--HHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHH--HHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 457899999999851 1234555555 22 2221113333 4456999999999999985 66777777
Q ss_pred HHHHHHHHhc
Q 012928 422 MHTVALRTES 431 (453)
Q Consensus 422 m~~I~~~aE~ 431 (453)
++..-+++.+
T Consensus 124 ~~~l~~~~~~ 133 (311)
T PF03644_consen 124 LKYLRKEAHE 133 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 7777777776
No 400
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=37.85 E-value=1.8e+02 Score=32.21 Aligned_cols=180 Identities=15% Similarity=0.215 Sum_probs=96.6
Q ss_pred EEEEeeCcEec-ccceeecCCCccCCCCCCHhhH-HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEe
Q 012928 238 KCIVVDGGELK-SRRHLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI 315 (453)
Q Consensus 238 ~~~V~ngG~L~-s~KgVnlp~~~~~lp~ltekD~-~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakI 315 (453)
.+.+-.||+-. =++.+++|=+.+. +|..|. ..|..+...+-.+-.+.|-.....+..+.+++ +-++.++.--
T Consensus 56 dviIsrG~ta~~i~~~~~iPVv~i~---~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll---~~~i~~~~~~ 129 (526)
T TIGR02329 56 DVVVAGGSNGAYLKSRLSLPVIVIK---PTGFDVMQALARARRIASSIGVVTHQDTPPALRRFQAAF---NLDIVQRSYV 129 (526)
T ss_pred cEEEECchHHHHHHHhCCCCEEEec---CChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEec
Confidence 44444555422 1235678877764 377775 66777766677777778877777787787777 4456555444
Q ss_pred cChhhhccHHHHHhhcCEEEEeCC---CccccCCC--------CCHHHHHHHHHHHHHHcC-----------CCEEEEec
Q 012928 316 ESADSIPNLHSIISASDGAMVARG---DLGAELPI--------EDVPLLQEDIIRRCRSMQ-----------KPVIVATN 373 (453)
Q Consensus 316 ET~~gv~NldeI~~~sDgImIgRG---DLg~elg~--------e~v~~aqk~Ii~~c~~aG-----------kpvi~aTq 373 (453)
...++-.-+.++.+.--.++||.+ +++-++|+ +.+..+..+.+..++... ..-..+..
T Consensus 130 ~~~e~~~~~~~l~~~G~~~viG~~~~~~~A~~~gl~~ili~s~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (526)
T TIGR02329 130 TEEDARSCVNDLRARGIGAVVGAGLITDLAEQAGLHGVFLYSADSVRQAFDDALDVARATRLRQAATLRSATRNQLRTRY 209 (526)
T ss_pred CHHHHHHHHHHHHHCCCCEEECChHHHHHHHHcCCceEEEecHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcccc
Confidence 444444455555443224555543 45555565 233333333333222111 00112223
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHH
Q 012928 374 MLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (453)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (453)
-++.|+.. .|...++..-+..+...---||+.||+=.||- -..+.+++-.
T Consensus 210 ~f~~iiG~-S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe--~lA~~IH~~S 259 (526)
T TIGR02329 210 RLDDLLGA-SAPMEQVRALVRLYARSDATVLILGESGTGKE--LVAQAIHQLS 259 (526)
T ss_pred chhheeeC-CHHHHHHHHHHHHHhCCCCcEEEECCCCcCHH--HHHHHHHHhc
Confidence 34444433 33333444444445555567999999999995 3345555443
No 401
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=37.82 E-value=5.1e+02 Score=27.30 Aligned_cols=150 Identities=11% Similarity=0.142 Sum_probs=81.8
Q ss_pred CCCHhhHHHH-HhhhhcCCcEE-------EeccccCHHHHHHHHHHHHhcC----CCceEEEEe--cChhhhccHHHHHh
Q 012928 264 SITDKDWEDI-KFGVDNQVDFY-------AVSFVKDAKVVHELKDYLKSCN----ADIHVIVKI--ESADSIPNLHSIIS 329 (453)
Q Consensus 264 ~ltekD~~DI-~~a~~~gvd~I-------~lSfV~sa~dv~~v~~~L~~~~----~~i~IIakI--ET~~gv~NldeI~~ 329 (453)
-|+.+..+.+ ...+..|+|+| --+|..-.+-+..+.+.+++++ +....++.| ++.+.+++.+...+
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~ 216 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKE 216 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 5677777666 44567899988 2255555666666666665544 667788888 34477777777766
Q ss_pred h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcC-CCEEEEechhhhhccCCCCchHH-HHHHHHHHHhCccEEEec
Q 012928 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLS 406 (453)
Q Consensus 330 ~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aG-kpvi~aTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs 406 (453)
. ++++|+.+.=. |+..+.. .++..+ .|+...--|.-+|..++.- -+- ..-.--+-+.|+|.++-.
T Consensus 217 ~Ga~~vMv~~~~~----G~~~~~~-------l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 217 AGAGGVLIAPGLT----GLDTFRE-------LAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred cCCCEEEeecccc----hHHHHHH-------HHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHHhCCCEEEeC
Confidence 5 79999964322 2221111 134455 5555443444444444332 111 001112344688887653
Q ss_pred CcccCCCCHHHHHHHHHHHHHH
Q 012928 407 GETAHGKFPLKAVKVMHTVALR 428 (453)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~~ 428 (453)
+..|+|+ ...+...+++..
T Consensus 285 --~~~g~~~-~~~e~~~~ia~~ 303 (364)
T cd08210 285 --NYGGRFG-FSREECQAIADA 303 (364)
T ss_pred --CCcCCcc-CCHHHHHHHHHH
Confidence 4566765 333334444443
No 402
>PRK00568 carbon storage regulator; Provisional
Probab=37.74 E-value=73 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.9
Q ss_pred cccCCEEEEeCCeeEEEEEEEeCCeEEEE
Q 012928 212 VEVGDILLVDGGMMSLAVKSKTKDLVKCI 240 (453)
Q Consensus 212 vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~ 240 (453)
=++|..|.|+| .|..+|.++.++.|+.-
T Consensus 6 RK~gEsI~Igd-~I~I~Vl~i~g~~VrlG 33 (76)
T PRK00568 6 RKVNEGIVIDD-NIHIKVISIDRGSVRLG 33 (76)
T ss_pred eeCCCeEEeCC-CeEEEEEEEcCCEEEEE
Confidence 37899999999 79999999998887653
No 403
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=37.63 E-value=4.5e+02 Score=26.56 Aligned_cols=148 Identities=13% Similarity=0.065 Sum_probs=80.1
Q ss_pred CHhhH-HHHHhhhhcC-----CcEEEe-ccccCHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhh-cC--EE
Q 012928 266 TDKDW-EDIKFGVDNQ-----VDFYAV-SFVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SD--GA 334 (453)
Q Consensus 266 tekD~-~DI~~a~~~g-----vd~I~l-SfV~sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~-sD--gI 334 (453)
+..++ +-++...+.| ++.|=+ || +..|...++..+........+.+- .=+.++ ++..+++ .| .+
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~--~~~d~~~v~~~~~~~~~~~~v~~~~r~~~~d---ie~A~~~g~~~v~i 93 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFLY--TEKDREAVEACLDRGYKFPEVTGWIRANKED---LKLVKEMGLKETGI 93 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecCc--ChHHHHHHHHHHHcCCCCCEEEEEecCCHHH---HHHHHHcCcCEEEE
Confidence 44555 4445667889 887744 44 457888888887542112333332 122233 3333332 45 44
Q ss_pred EEeCCCcccc--C--CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH--------HHHHHH-HHHhCcc
Q 012928 335 MVARGDLGAE--L--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--------VSDIAI-AVREGAD 401 (453)
Q Consensus 335 mIgRGDLg~e--l--g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE--------v~Dv~n-av~~G~D 401 (453)
++.-.|+-.. + ..+++....+.+++.|+++|+.+-+.- -.++|++ +..++. +...|+|
T Consensus 94 ~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~~v~~~~~~~~~~~~~~G~~ 164 (279)
T cd07947 94 LMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYGFVLPFVNKLMKLSKESGIP 164 (279)
T ss_pred EEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCcccchHHHHHHHHHHHHHCCCC
Confidence 4443343222 1 224566667889999999999877642 1233332 222222 2236999
Q ss_pred E-EEecCcccC-------CCCHHHHHHHHHHHHHH
Q 012928 402 A-VMLSGETAH-------GKFPLKAVKVMHTVALR 428 (453)
Q Consensus 402 ~-vmLs~ETA~-------G~yP~eaV~~m~~I~~~ 428 (453)
+ +-| .+|.= +.+|.+.-+++..+..+
T Consensus 165 ~~i~l-~DTvG~a~P~~~~~~p~~v~~l~~~l~~~ 198 (279)
T cd07947 165 VKIRL-CDTLGYGVPYPGASLPRSVPKIIYGLRKD 198 (279)
T ss_pred EEEEe-ccCCCcCCccccccchHHHHHHHHHHHHh
Confidence 5 555 45543 34667777777776543
No 404
>PTZ00344 pyridoxal kinase; Provisional
Probab=37.50 E-value=2.4e+02 Score=28.23 Aligned_cols=111 Identities=12% Similarity=0.148 Sum_probs=69.9
Q ss_pred CCCCCCHhhHHHHHhhh-----hcCCcEEEeccccCHHHHHHHHHHHHhc---CCCceEEEE---------ecChhhhcc
Q 012928 261 NLPSITDKDWEDIKFGV-----DNQVDFYAVSFVKDAKVVHELKDYLKSC---NADIHVIVK---------IESADSIPN 323 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~-----~~gvd~I~lSfV~sa~dv~~v~~~L~~~---~~~i~IIak---------IET~~gv~N 323 (453)
.-|.+++.+.+++...+ ....++|...++-+++.+..+.+++++. +.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 34677787776664443 2356899999999999999999988642 223344322 234555666
Q ss_pred HHHHHhhcCEEEEeCCCccccCCCC--CHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 324 LHSIISASDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 324 ldeI~~~sDgImIgRGDLg~elg~e--~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
+.+++..+|.+.....++..=.|.+ ....+ .++.+...+.|...++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 7778888999988877776555542 22222 334444445576655555
No 405
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=37.49 E-value=3.8e+02 Score=25.96 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred HhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh---------hccHHHHHhh-cCEEEEeCCCccc
Q 012928 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS---------IPNLHSIISA-SDGAMVARGDLGA 343 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g---------v~NldeI~~~-sDgImIgRGDLg~ 343 (453)
+.+...|+-+|-.. +++||.++++.. +++||--|-..-. ++..++++++ +|.|-+
T Consensus 6 ~Aa~~gGA~giR~~---~~~dI~aik~~v-----~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAl------- 70 (192)
T PF04131_consen 6 KAAEEGGAVGIRAN---GVEDIRAIKKAV-----DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIAL------- 70 (192)
T ss_dssp HHHHHCT-SEEEEE---SHHHHHHHHTTB------S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEE-------
T ss_pred HHHHHCCceEEEcC---CHHHHHHHHHhc-----CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEE-------
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE--ecCcccCCCCHHHHHHH
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM--LSGETAHGKFPLKAVKV 421 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm--Ls~ETA~G~yP~eaV~~ 421 (453)
+--...=|.--.+++...++.+ -.++| .-+-+.|+-++...|+|.|= |||=|...+...--.+.
T Consensus 71 DaT~R~Rp~~l~~li~~i~~~~-~l~MA-------------Dist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~l 136 (192)
T PF04131_consen 71 DATDRPRPETLEELIREIKEKY-QLVMA-------------DISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFEL 136 (192)
T ss_dssp E-SSSS-SS-HHHHHHHHHHCT-SEEEE-------------E-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHH
T ss_pred ecCCCCCCcCHHHHHHHHHHhC-cEEee-------------ecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHH
Q ss_pred HHHHHH
Q 012928 422 MHTVAL 427 (453)
Q Consensus 422 m~~I~~ 427 (453)
+++++.
T Consensus 137 v~~l~~ 142 (192)
T PF04131_consen 137 VRELVQ 142 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
No 406
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.28 E-value=1.8e+02 Score=24.52 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 294 dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
-+..+++++++.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+|+.+-
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEEe
Confidence 34567888887666543332 2444566666667999987 688999999999999999998773
No 407
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.26 E-value=2.3e+02 Score=28.84 Aligned_cols=118 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh-----hhhccC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML-----ESMIDH 381 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL-----eSM~~~ 381 (453)
.++|...+-....++.+.+-+.. .+.||+. +-.+|+++=...-+++++.|+..|..|=.==..+ .+....
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~ 149 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDE 149 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCccc
Q ss_pred CCCchHHHHHHHHHHHh-CccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 382 PTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 382 ~~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
..-......++..++.. |+|++-.+-.|+.|.| |---...|++|....
T Consensus 150 ~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 150 REAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred chhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 408
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.21 E-value=4.9e+02 Score=26.95 Aligned_cols=147 Identities=13% Similarity=0.051 Sum_probs=87.7
Q ss_pred CCHhhHHHHH-hhhhcCCcEEEe---------ccc---cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-
Q 012928 265 ITDKDWEDIK-FGVDNQVDFYAV---------SFV---KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 330 (453)
Q Consensus 265 ltekD~~DI~-~a~~~gvd~I~l---------SfV---~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~- 330 (453)
++..++..|. ...+.|+|.|=+ ||. ....+.+.++.+... -.+.++.+.+- -|.-+++++-.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~--pg~~~~~dl~~a~ 98 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL--PGIGTVDDLKMAY 98 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec--cCcccHHHHHHHH
Confidence 4666766664 445689999866 332 111233344443333 23455555442 122234444332
Q ss_pred ---cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEec
Q 012928 331 ---SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 406 (453)
Q Consensus 331 ---sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs 406 (453)
.|.|-|+ ....+. ....+.++.+++.|..+.+. +. .....+.+++.+.+.. ...|+|++-+
T Consensus 99 ~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~----~a~~~~~e~l~~~a~~~~~~Ga~~i~i- 163 (337)
T PRK08195 99 DAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LM----MSHMAPPEKLAEQAKLMESYGAQCVYV- 163 (337)
T ss_pred HcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EE----eccCCCHHHHHHHHHHHHhCCCCEEEe-
Confidence 5776664 122232 34588899999999987653 11 2244566676666654 5569999988
Q ss_pred CcccCCCCHHHHHHHHHHHHHHH
Q 012928 407 GETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+|+=..+|.+.-+.++.+-.+.
T Consensus 164 ~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 164 VDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 58998999998888888876554
No 409
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=37.05 E-value=3.1e+02 Score=27.99 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=73.7
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE-echh---hhhccCC
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNML---ESMIDHP 382 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a-TqmL---eSM~~~~ 382 (453)
.++|...+-....++.+.+=+.. .+-||+..- .+++++=...-+++++.|++.|..|=.= .++- +......
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 152 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGS----HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVAD 152 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccc
Confidence 67888888887755444433333 568999633 4566666667799999999999986210 0010 0000000
Q ss_pred -CCchHHHHHHHHHHH-hCccEEEecCcccCCCC---HH-HHHHHHHHHHHHH
Q 012928 383 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PL-KAVKVMHTVALRT 429 (453)
Q Consensus 383 -~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~-eaV~~m~~I~~~a 429 (453)
.-......+...++. -|+|++-.+--|+.|.| |. --...+++|....
T Consensus 153 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 153 ESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred ccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 000112335567776 49999999999999999 44 4567777776555
No 410
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=36.95 E-value=5.6e+02 Score=27.77 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=119.7
Q ss_pred cEEEEeecCCCeeeecCCCCceeecCCCEEEEEeecCCCCccEEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeE
Q 012928 158 AVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLV 237 (453)
Q Consensus 158 ~iaIllDLkGPkIRtG~l~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v 237 (453)
-.+.++.-.||..++|.+ ..+..|..+-.... .......-+.+ .=.+.+++|+.|..-+..+.+.|- +.+
T Consensus 28 ~~g~~~~~~g~~~~ige~---~~i~~~~~~~eV~~--~~~~~~~~~~~-~~~~gi~~g~~v~~~~~~~~v~vg----~~~ 97 (432)
T PRK06793 28 VQEQFFVAKGPKAKIGDV---CFVGEHNVLCEVIA--IEKENNMLLPF-EQTEKVCYGDSVTLIAEDVVIPRG----NHL 97 (432)
T ss_pred EEEEEEEEEcCCCCcCCE---EEECCCCEEEEEEE--ecCCcEEEEEc-cCccCCCCCCEEEECCCccEEEcC----Hhh
Confidence 456788888898888876 33332221111111 11112222222 234578889999987766665542 345
Q ss_pred EEEEeeC-cEecccceeecC--CCccCCCCCCHhhHHHHHhhhhcCCc-------------EEEeccccCHHHHHHHHHH
Q 012928 238 KCIVVDG-GELKSRRHLNVR--GKSANLPSITDKDWEDIKFGVDNQVD-------------FYAVSFVKDAKVVHELKDY 301 (453)
Q Consensus 238 ~~~V~ng-G~L~s~KgVnlp--~~~~~lp~ltekD~~DI~~a~~~gvd-------------~I~lSfV~sa~dv~~v~~~ 301 (453)
.-+|.++ |.--..++...+ ...+.-|++...+...+...+..|+. +..+.-........ +...
T Consensus 98 lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL-l~~I 176 (432)
T PRK06793 98 LGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-LGMI 176 (432)
T ss_pred ccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH-HHHH
Confidence 5666653 443333322111 11233344433343434332333332 21111111111111 2222
Q ss_pred HHhcCCCceEEEEe-cChhhh-ccHHHHHhhc----CEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh
Q 012928 302 LKSCNADIHVIVKI-ESADSI-PNLHSIISAS----DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (453)
Q Consensus 302 L~~~~~~i~IIakI-ET~~gv-~NldeI~~~s----DgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL 375 (453)
.........+|+-| |...-+ +.+...+... -.++.+..|-+.-+- .+.+.+...+.+.-+..|++|++ +|
T Consensus 177 a~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r-~ra~~~a~~iAEyfr~~G~~VLl---il 252 (432)
T PRK06793 177 AKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ-LRAAKLATSIAEYFRDQGNNVLL---MM 252 (432)
T ss_pred hccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHcCCcEEE---Ee
Confidence 33333345566655 222222 2334344321 135555555532221 24666667777778888999998 67
Q ss_pred hhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHhc
Q 012928 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (453)
+||.....+-| |++ .+.+|...+-||.-....+.++++++-.
T Consensus 253 DslTr~a~A~r-eis-------------l~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 253 DSVTRFADARR-SVD-------------IAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred cchHHHHHHHH-HHH-------------HHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 87766554432 222 1345666667776666668888888875
No 411
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=36.66 E-value=3.8e+02 Score=26.79 Aligned_cols=46 Identities=33% Similarity=0.549 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHH-HHHhCccEEEec
Q 012928 351 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLS 406 (453)
Q Consensus 351 ~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs 406 (453)
+..-.+++++.+++ .+|+++= -.|+-.+..+++. +...|+|++.++
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vK----------l~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVK----------LTPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE----------cCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 45667777777776 7888772 1244446666665 446799998774
No 412
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=36.54 E-value=69 Score=25.56 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=29.1
Q ss_pred CCCEEEEEeecCCCCccEEEecccccccccccCCEEEE-eCCeeEE
Q 012928 183 EGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLV-DGGMMSL 227 (453)
Q Consensus 183 ~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~IlI-DDG~I~L 227 (453)
+|+...+-.+.. ...+.++-..|+..++.||.+.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~---~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDG---EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCC---eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 355555554322 13577777789999999999999 7777654
No 413
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=36.30 E-value=93 Score=30.47 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=35.4
Q ss_pred HhhhhcCCcEEEeccccC--HHHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhh-cCEEEEeCC
Q 012928 274 KFGVDNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 339 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~s--a~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~-sDgImIgRG 339 (453)
+...+.|+|+|-++--.. ..|+..+++.- .+++||+ -|.|.+-. .+.+.. +|++|+||+
T Consensus 159 ~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda---~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 159 RLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESA---KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHH---HHHHHcCCCEEEEcCC
Confidence 455678999876642221 33555554432 3577886 35555433 333434 899999999
No 414
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=36.17 E-value=4.1e+02 Score=27.97 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=75.6
Q ss_pred CceEEEEecChhhhccHHHHHhh-cCEEEEeCCCcc---ccCCCCCHHHHHHHHHHHHHHcCCCEEE-Eechh-------
Q 012928 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG---AELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML------- 375 (453)
Q Consensus 308 ~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg---~elg~e~v~~aqk~Ii~~c~~aGkpvi~-aTqmL------- 375 (453)
.++|...+-....++.+.+-+.. .+.|||..-.|. ..+++++=...-+++++.|+++|..|=- -..+-
T Consensus 75 ~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~ 154 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEA 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccc
Confidence 47788888887766555544444 579999766553 2345666666779999999999998621 00000
Q ss_pred ---hhhccCC----CCchHHHHHHHHHHH-hCccEEEecCcccCCCCH-----H---HHHHHHHHHHHHH
Q 012928 376 ---ESMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP-----L---KAVKVMHTVALRT 429 (453)
Q Consensus 376 ---eSM~~~~----~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP-----~---eaV~~m~~I~~~a 429 (453)
+...... .-......+...++. -|+|++-.+--|+.|.|+ . --...+++|-.+.
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v 224 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL 224 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc
Confidence 1100000 000112445556775 599999999999999993 2 3455677776654
No 415
>PLN02535 glycolate oxidase
Probab=36.07 E-value=1.1e+02 Score=32.31 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHhhhhcCCcEEEecccc------CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~------sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGD 340 (453)
+|...+.+.|+|+|.+|-.. .+.-+..+.+.....+.++.||+ -.|+.+-.+|+++ +|++++||.=
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~----dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL----DGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe----eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 44566778999999887321 11123334443333344577774 3577777888776 7999999877
Q ss_pred cc
Q 012928 341 LG 342 (453)
Q Consensus 341 Lg 342 (453)
|-
T Consensus 311 l~ 312 (364)
T PLN02535 311 IY 312 (364)
T ss_pred Hh
Confidence 63
No 416
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=35.72 E-value=3.1e+02 Score=27.22 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=79.9
Q ss_pred CHhhH-HHHHhhhh-cCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEE--ecChhhhccHHHHHhh-----cCEEEE
Q 012928 266 TDKDW-EDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-----SDGAMV 336 (453)
Q Consensus 266 tekD~-~DI~~a~~-~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIak--IET~~gv~NldeI~~~-----sDgImI 336 (453)
++++. +.|..+.+ +++|+|=+-+-..-+++.++.++-.+.| .|++- -|.--..+.+.+++.. +|-+=|
T Consensus 76 ~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 76 SEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 45555 44555555 4699998876555556666665554433 23331 2222233444555442 354444
Q ss_pred eCCCccccCCC--CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEE--EecCcccCC
Q 012928 337 ARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV--MLSGETAHG 412 (453)
Q Consensus 337 gRGDLg~elg~--e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v--mLs~ETA~G 412 (453)
+ -++- +++....+.....-. +++|+++. ||-..+.++|. +..+. |.... .+-..||-|
T Consensus 153 A------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SRv-----~~~~~-GS~~tya~~~~~sAPG 214 (231)
T COG0710 153 A------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISRV-----AGPVF-GSPITYASLDKPSAPG 214 (231)
T ss_pred E------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhhh-----hHhhh-CCceeEeecCCCCCCC
Confidence 3 1221 234333333322222 89998876 89899999984 34444 44443 466679999
Q ss_pred CCHHHHHHHHHHHHH
Q 012928 413 KFPLKAVKVMHTVAL 427 (453)
Q Consensus 413 ~yP~eaV~~m~~I~~ 427 (453)
..+++.++.+..+..
T Consensus 215 Qi~v~~l~~~~~~l~ 229 (231)
T COG0710 215 QISVDELRKILTLLG 229 (231)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999888776653
No 417
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=35.51 E-value=5e+02 Score=26.57 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecCcc
Q 012928 352 LLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGET 409 (453)
Q Consensus 352 ~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ET 409 (453)
....+++++.+++ .+|+++= -.|.-.++.+++.+ ...|+|++.+++=+
T Consensus 149 ~~~~eiv~~v~~~~~iPv~vK----------l~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 149 QRYLDILRAVKSAVTIPVAVK----------LSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEE----------cCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 3345666766654 7898872 22443466666664 45699999997643
No 418
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.07 E-value=3.4e+02 Score=27.45 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
+.-+-.+-..|+|++|+..=--...-+-+.+++.+.|+..++
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~ 132 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD 132 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 444444555688888775332222224566777777776654
No 419
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.01 E-value=2.1e+02 Score=28.64 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=48.9
Q ss_pred cCEEEEeCC-CccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-HHHHHHHHHhCccEEEecCc
Q 012928 331 SDGAMVARG-DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 331 sDgImIgRG-DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~E 408 (453)
++|++++-. -=+..|..++-..+.+.+++.+. ..+|++.. .+.++..| +.-.-.+...|+|++|+..-
T Consensus 39 v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viag---------vg~~~t~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 39 IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQ---------VGSVNTAEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred CCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEec---------CCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 788887520 00112222233333334444332 23566653 33344445 55556778899999998743
Q ss_pred ccCCCCHHHHHHHHHHHHHHHh
Q 012928 409 TAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE 430 (453)
--...-+-+.++..+.|+..+.
T Consensus 109 ~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 109 FYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC
Confidence 2223234678888999987654
No 420
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=34.89 E-value=62 Score=35.03 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=65.8
Q ss_pred cCCcEEEeccccCHHHHHHHHHHHHhc---------C-----------C-CceEEEEecChhhhccHHHHHhh----cC-
Q 012928 279 NQVDFYAVSFVKDAKVVHELKDYLKSC---------N-----------A-DIHVIVKIESADSIPNLHSIISA----SD- 332 (453)
Q Consensus 279 ~gvd~I~lSfV~sa~dv~~v~~~L~~~---------~-----------~-~i~IIakIET~~gv~NldeI~~~----sD- 332 (453)
.++-.|.+|++.+++.+..+.+++... | . .+.+|..+|+.+++-+...|... .|
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 456678899999999988877765321 1 1 35577788999999888888765 12
Q ss_pred ---EEEEeCCCccccCCCC----CHHHHHHHHHHHHHHcCCCE
Q 012928 333 ---GAMVARGDLGAELPIE----DVPLLQEDIIRRCRSMQKPV 368 (453)
Q Consensus 333 ---gImIgRGDLg~elg~e----~v~~aqk~Ii~~c~~aGkpv 368 (453)
-+|+||.|=++..|.- -+..|..++-+.-.+.|.|+
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i 245 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPI 245 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 8999999999999973 23455566667777778885
No 421
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=34.82 E-value=1.4e+02 Score=37.05 Aligned_cols=135 Identities=15% Similarity=0.073 Sum_probs=81.7
Q ss_pred eeecCCCccCCCCCCHhhHHHHHhhhhcCCcEEEecc---ccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHH-H
Q 012928 252 HLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHS-I 327 (453)
Q Consensus 252 gVnlp~~~~~lp~ltekD~~DI~~a~~~gvd~I~lSf---V~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~Nlde-I 327 (453)
|=.||+.++ |+ .++.+. .++.|+|.|.-|- +.+.+|+.++-.-|++.+...+|-+|+=...++..+.. +
T Consensus 944 GG~Lpg~KV-----~~-~IA~~R-~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gv 1016 (1485)
T PRK11750 944 GGQLPGDKV-----NP-LIARLR-YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGV 1016 (1485)
T ss_pred CCcCccccC-----CH-HHHHHc-CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhCh
Confidence 445566554 32 333333 3466888776543 35777777777777888888889999987777766663 3
Q ss_pred Hhh-cCEEEEeCCCcccc---------CCCC---CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHH
Q 012928 328 ISA-SDGAMVARGDLGAE---------LPIE---DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI 394 (453)
Q Consensus 328 ~~~-sDgImIgRGDLg~e---------lg~e---~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~n 394 (453)
+++ +|.|.|.-+|=|.- .|++ -|..+++.+...-.+..+.+++. ...-| -.|++-
T Consensus 1017 aka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~---------Ggl~t---~~Dv~k 1084 (1485)
T PRK11750 1017 AKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVD---------GGLKT---GLDVIK 1084 (1485)
T ss_pred hhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEc---------CCcCC---HHHHHH
Confidence 333 89999987664322 2222 24444444433322222334443 33333 478999
Q ss_pred HHHhCccEEEe
Q 012928 395 AVREGADAVML 405 (453)
Q Consensus 395 av~~G~D~vmL 405 (453)
|+..|||.+-+
T Consensus 1085 A~aLGAd~~~~ 1095 (1485)
T PRK11750 1085 AAILGAESFGF 1095 (1485)
T ss_pred HHHcCCccccc
Confidence 99999998765
No 422
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.82 E-value=79 Score=32.36 Aligned_cols=62 Identities=8% Similarity=0.093 Sum_probs=47.3
Q ss_pred hHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 269 D~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
..+++..+++.|+|.|.+=.. +++++.++.+.+.. + +.||-.-|+ +|+.++++. +|.|.+|.
T Consensus 206 tleea~~a~~agaDiImLDnm-spe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 206 SLAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 456677788999999999875 78888887776642 2 256766665 788888877 89999874
No 423
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=34.70 E-value=2.1e+02 Score=30.01 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=26.5
Q ss_pred ccccccCCEEEEeCCeeEEEEEEEeCC-eEEEEEee
Q 012928 209 VNDVEVGDILLVDGGMMSLAVKSKTKD-LVKCIVVD 243 (453)
Q Consensus 209 ~~~vk~Gd~IlIDDG~I~L~V~ev~~~-~v~~~V~n 243 (453)
-+.+++||+|++++| +..+|.+..+. ....+...
T Consensus 99 ~kr~k~G~~i~f~~~-l~a~v~e~~~~g~~~l~F~~ 133 (348)
T COG0809 99 SKRLKAGDEIYFGDG-LKATVLERLEHGLRLLEFDY 133 (348)
T ss_pred ccCCCCCCEEEeCCC-ceEEEEEecCCceEEEEEec
Confidence 467899999999999 88888888766 55555543
No 424
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=34.69 E-value=81 Score=31.79 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh-hcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEec
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~-~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTq 373 (453)
+..+++.+.+.|..+.|.+- +..---+|+++++. -.|.|+.+-++ ......+.+.|+++++|+|.+.
T Consensus 86 ve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~g- 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTG- 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEC-
Confidence 44566777777877766543 33222457777774 36777665222 2356678899999999999762
Q ss_pred hhhhhccCCCCchHHHHHHHH
Q 012928 374 MLESMIDHPTPTRAEVSDIAI 394 (453)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~n 394 (453)
..-....||+-++.|++.
T Consensus 154 ---Gag~k~dp~~~~~~di~~ 171 (268)
T PRK15116 154 ---GAGGQIDPTQIQVVDLAK 171 (268)
T ss_pred ---CcccCCCCCeEEEEeeec
Confidence 223456899888887743
No 425
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.68 E-value=1.2e+02 Score=31.21 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHhhhhcCCcEEEeccccCH---------------HHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhhcCEE
Q 012928 272 DIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISASDGA 334 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa---------------~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~sDgI 334 (453)
-++.+.+.|+|.|.+. .+++ .+...+++.-+. -.+++||+ -|.|.+ .+.+.+.-+||+
T Consensus 146 ~~~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-~~~ipVi~NGdI~s~~---da~~~l~g~dgV 220 (318)
T TIGR00742 146 FVEIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKD-FPHLTIEINGGIKNSE---QIKQHLSHVDGV 220 (318)
T ss_pred HHHHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHh-CCCCcEEEECCcCCHH---HHHHHHhCCCEE
Confidence 3355567899998765 4543 144444443222 23577776 244443 233344458999
Q ss_pred EEeCCCcc
Q 012928 335 MVARGDLG 342 (453)
Q Consensus 335 mIgRGDLg 342 (453)
|||||=|+
T Consensus 221 MigRgal~ 228 (318)
T TIGR00742 221 MVGREAYE 228 (318)
T ss_pred EECHHHHh
Confidence 99999776
No 426
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=34.64 E-value=2e+02 Score=23.13 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=39.5
Q ss_pred cCCCCceeecCCCEEEEEeec-CCCCccEEEecccccccccccCC--EEEEeCC-eeEEEEEEEe---CCeEEEEEee
Q 012928 173 GDVPQPIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGD--ILLVDGG-MMSLAVKSKT---KDLVKCIVVD 243 (453)
Q Consensus 173 G~l~~~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~Gd--~IlIDDG-~I~L~V~ev~---~~~v~~~V~n 243 (453)
+.++..+.+.+|+.++|...- +...+...|.-... .+..++ .+..++| ...|.+..+. .+...|.+.|
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~---~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 79 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQ---ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKN 79 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCE---ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEE
Confidence 456667889999999998752 22222334432221 223333 3444544 4567776653 3467899888
No 427
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.33 E-value=76 Score=34.88 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=40.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 99 r~TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
.+-.+.+.+|+. +..+..+.|+++|+++.=+.-+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 455677788885 56799999999999999999999988777777777775
No 428
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=33.90 E-value=88 Score=26.22 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCceeecCCCEEEEEeecCCCCccEEEecccccccccccCCE
Q 012928 176 PQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDI 217 (453)
Q Consensus 176 ~~~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~~~vk~Gd~ 217 (453)
+..+.+++|+.++|+..+.......+.++.-++-..+.+|+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~ 75 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGET 75 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-E
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCE
Confidence 347899999988887664433335566655455556666654
No 429
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=33.80 E-value=3.2e+02 Score=27.00 Aligned_cols=122 Identities=12% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCC-ceEEEEecChhhhccHHHHHhhcCEEEEeCCCc
Q 012928 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISASDGAMVARGDL 341 (453)
Q Consensus 263 p~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~-i~IIakIET~~gv~NldeI~~~sDgImIgRGDL 341 (453)
|-|..-+..-|+-+...|+.++.++=+ -+++-..+|++.++.+-. +++.+---|. +.++-|..++|+++- +
T Consensus 106 PIl~yG~e~~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTtd---eRmell~~~adsFiY----v 177 (268)
T KOG4175|consen 106 PILRYGVENYIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTTD---ERMELLVEAADSFIY----V 177 (268)
T ss_pred HHHhhhHHHHHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCChH---HHHHHHHHhhcceEE----E
Confidence 556666667777777788888776654 467777889988775533 2233322233 445556666775442 1
Q ss_pred cccCCC----CCHHHHHHHHHHHHHHc--CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 342 GAELPI----EDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 342 g~elg~----e~v~~aqk~Ii~~c~~a--Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
--.||. +.+......++...|++ .+|+-+ .-+.-|+.-...|+.+ +|+|+.
T Consensus 178 VSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV---------GFGvst~EHf~qVgsv----aDGVvv 234 (268)
T KOG4175|consen 178 VSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV---------GFGVSTPEHFKQVGSV----ADGVVV 234 (268)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE---------eeccCCHHHHHhhhhh----ccceEe
Confidence 123333 33555555555555655 466544 2345666556555544 455554
No 430
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.74 E-value=1.8e+02 Score=28.54 Aligned_cols=83 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCcEEEeccccC--------HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-----cCEEEE
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKD--------AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV 336 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~s--------a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-----sDgImI 336 (453)
.+.++...+.|+|.|.++-+.+ -+-+.++++.. ++++++ .-|+.+.+++.+. +||+++
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~-----~ipvia----~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV-----KIPVIA----SGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC-----CCCEEE----eCCCCCHHHHHHHHHcCCcceeeE
Q ss_pred eCCCccccCCCCCHHHHHHHHHHHHHHcCCCE
Q 012928 337 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV 368 (453)
Q Consensus 337 gRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpv 368 (453)
|+....-.++ .+.+.+.|.++|.|+
T Consensus 229 g~a~~~~~~~-------~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 229 ASVFHYREIT-------IGEVKEYLAERGIPV 253 (254)
T ss_pred hHHHhCCCCC-------HHHHHHHHHHCCCcc
No 431
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=33.64 E-value=87 Score=32.11 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=37.3
Q ss_pred HhhhhcCCcEEEeccccCHH--------HHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhh--cCEEEEeCCCc
Q 012928 274 KFGVDNQVDFYAVSFVKDAK--------VVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA--SDGAMVARGDL 341 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~--------dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~--sDgImIgRGDL 341 (453)
+.+.+.|+|+|.++- ++.. +...+++.-+. -+++||+ -|.|++- +.++++. +||||||||=|
T Consensus 155 ~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~--~~iPVi~nGdI~t~~d---a~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 155 DAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQR--LTIPVIANGEIWDWQS---AQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhh--cCCcEEEeCCcCCHHH---HHHHHhccCCCEEEEcHHhH
Confidence 444578999998852 3321 33323332222 2577776 4666543 3444533 89999999966
Q ss_pred cc
Q 012928 342 GA 343 (453)
Q Consensus 342 g~ 343 (453)
+-
T Consensus 229 ~n 230 (312)
T PRK10550 229 NI 230 (312)
T ss_pred hC
Confidence 53
No 432
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=33.57 E-value=1e+02 Score=28.03 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=13.2
Q ss_pred CceeecCCCEEEEEee
Q 012928 177 QPIILKEGQEFNFTIK 192 (453)
Q Consensus 177 ~~i~L~~G~~v~lt~~ 192 (453)
..+.+++||+|+++..
T Consensus 61 ~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 61 EALVVKKGTPVKVTVE 76 (135)
T ss_pred CEEEECCCCEEEEEEE
Confidence 3689999999988755
No 433
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=33.45 E-value=5.7e+02 Score=26.60 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred CccCCCCCCHhhHHHHHhhhh-cCCcEEEecccc--------CHHHHHHHHHHHHhcCC--CceEEEEec-ChhhhccHH
Q 012928 258 KSANLPSITDKDWEDIKFGVD-NQVDFYAVSFVK--------DAKVVHELKDYLKSCNA--DIHVIVKIE-SADSIPNLH 325 (453)
Q Consensus 258 ~~~~lp~ltekD~~DI~~a~~-~gvd~I~lSfV~--------sa~dv~~v~~~L~~~~~--~i~IIakIE-T~~gv~Nld 325 (453)
.++..+.+..++.+++..+++ .++|.+.+..-. ...+...+.+.++..-. +++|++|+= +....+.+.
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~ 204 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAK 204 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHH
Q ss_pred HHHhh-cCEEEE----e---------CC------CccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCc
Q 012928 326 SIISA-SDGAMV----A---------RG------DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (453)
Q Consensus 326 eI~~~-sDgImI----g---------RG------DLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Pt 385 (453)
.+.++ +|+|.+ | |+ +...+.|++ ......++.+.. .+.|++. ..+.-+
T Consensus 205 ~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p-t~~~l~~i~~~~--~~ipvia---------~GGI~~ 272 (352)
T PRK05437 205 RLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP-TAQSLLEARSLL--PDLPIIA---------SGGIRN 272 (352)
T ss_pred HHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC-HHHHHHHHHHhc--CCCeEEE---------ECCCCC
Q ss_pred hHHHHHHHHHHHhCccEEEecCcccCC---CCHHHHHHHHHHHHHHHhc
Q 012928 386 RAEVSDIAIAVREGADAVMLSGETAHG---KFPLKAVKVMHTVALRTES 431 (453)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmLs~ETA~G---~yP~eaV~~m~~I~~~aE~ 431 (453)
..|+..++..|+|++++..---.+ .=+..+++++.++..+...
T Consensus 273 ---~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~ 318 (352)
T PRK05437 273 ---GLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKI 318 (352)
T ss_pred ---HHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
No 434
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.42 E-value=1.8e+02 Score=31.26 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=48.7
Q ss_pred cHHHHHhhcCEEEEeCCCccccC-CCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchH-HHHHHHHHHHhCc
Q 012928 323 NLHSIISASDGAMVARGDLGAEL-PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA-EVSDIAIAVREGA 400 (453)
Q Consensus 323 NldeI~~~sDgImIgRGDLg~el-g~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrA-Ev~Dv~nav~~G~ 400 (453)
++-..++.+|.++.|-||+-.+. |...+.+ +..|+..|||+++..| +.-|=+. .-...++.+...+
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-----~l~A~l~gkpv~l~gq-------siGPf~~~~~r~l~r~vl~~~ 177 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-----ALCAFMAKKPLYMIGH-------SVGPFQDEQFNQLANYVFGHC 177 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHH-----HHHHHHcCCCEEEECC-------cCCCcCCHHHHHHHHHHHhcC
Confidence 33444566999999999998775 5433333 2467789999988765 3334332 3455777777778
Q ss_pred cEEEecCc
Q 012928 401 DAVMLSGE 408 (453)
Q Consensus 401 D~vmLs~E 408 (453)
|.|.+..+
T Consensus 178 ~~ItvRD~ 185 (426)
T PRK10017 178 DALILRES 185 (426)
T ss_pred CEEEEccH
Confidence 87766533
No 435
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=33.36 E-value=1.1e+02 Score=30.46 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=35.4
Q ss_pred ceeecCCCEEEEEeecCCCCccEEEecccccc--------------cccccCCEEEEeCCeeEEEEEEE
Q 012928 178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFV--------------NDVEVGDILLVDGGMMSLAVKSK 232 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~--------------~~vk~Gd~IlIDDG~I~L~V~ev 232 (453)
...|++||.++|+.-.+.-.-..+..|.+++. -.+++|+.++=|.|+..++|++-
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~D 82 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVED 82 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEcc
Confidence 46789999999986433211122222322211 24679999999999999988753
No 436
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.31 E-value=93 Score=30.11 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHhhhhcCCcEEEeccccC-----HHHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHHhh--cCEEEEeCCCc
Q 012928 271 EDIKFGVDNQVDFYAVSFVKD-----AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA--SDGAMVARGDL 341 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~s-----a~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~~~--sDgImIgRGDL 341 (453)
+.++...+.|+|+|.++-+.. .-+...++++.+. .++++++ -|-+++ .+.++++. +||+|+||.-.
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~--~~~pvia~GGi~~~~---di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA--VNIPVIASGGAGKPE---HFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh--CCCCEEEeCCCCCHH---HHHHHHHhCCCCEEEEeHHHH
Confidence 344556688999988865432 1123334444332 2566665 233332 33444443 79999999887
Q ss_pred cccCCCCC
Q 012928 342 GAELPIED 349 (453)
Q Consensus 342 g~elg~e~ 349 (453)
.-.+.+++
T Consensus 228 ~~~~~~~~ 235 (243)
T cd04731 228 FGEYTIAE 235 (243)
T ss_pred cCCCCHHH
Confidence 77776544
No 437
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=33.24 E-value=3.8e+02 Score=28.52 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCC
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 366 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGk 366 (453)
+-+|+..+++.. +.++|+| +|-+.++...+ +|+|.++-.-=..--+.........+|.++.. .+.
T Consensus 233 tW~di~~lr~~~-----~~pvivK-----gV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~-~~~ 301 (381)
T PRK11197 233 SWKDLEWIRDFW-----DGPMVIK-----GILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK-GDI 301 (381)
T ss_pred CHHHHHHHHHhC-----CCCEEEE-----ecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc-CCC
Q ss_pred CEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 367 pvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
|++. ..+.-+ -.|++.++..|+|++++
T Consensus 302 ~vi~---------dGGIr~---g~Di~KALaLGA~~V~i 328 (381)
T PRK11197 302 TILA---------DSGIRN---GLDVVRMIALGADTVLL 328 (381)
T ss_pred eEEe---------eCCcCc---HHHHHHHHHcCcCceeE
No 438
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=33.23 E-value=1.5e+02 Score=28.89 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=37.1
Q ss_pred HhhhhcCCcEEEeccccCHHH--------HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEe
Q 012928 274 KFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 337 (453)
Q Consensus 274 ~~a~~~gvd~I~lSfV~sa~d--------v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIg 337 (453)
..+...|+++| .|||.+-+| +.++.++++..+.+++|++ .+++|.++++++ +|.+-+.
T Consensus 116 ~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 116 LLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEcC
Confidence 33456799986 478887766 4455666666666677765 366677776653 4555553
No 439
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.18 E-value=2e+02 Score=29.92 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.|.+.|..+.|-+.-+... -+|+.++++..|.|+-+-.+ +..+..+-+.|+++++|.+.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 446677888888887766444443 25778888888988876332 345556788999999998765
No 440
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=33.17 E-value=83 Score=27.36 Aligned_cols=42 Identities=24% Similarity=0.479 Sum_probs=30.0
Q ss_pred cccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 012928 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (453)
Q Consensus 206 ~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~ 248 (453)
.++.+.+++||+|..-.|-+. +|.+++++.+..++-.|-.++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~G-~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGIIG-KVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCeEE-EEEEEeCCEEEEEECCCeEEE
Confidence 457788899999988877554 566677787777775555554
No 441
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=33.01 E-value=3.2e+02 Score=28.46 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=69.5
Q ss_pred HHHHhhhhc-CCcEEEecccc-CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCC
Q 012928 271 EDIKFGVDN-QVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 347 (453)
Q Consensus 271 ~DI~~a~~~-gvd~I~lSfV~-sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~ 347 (453)
+..+..++. |+-.+..+|.. ..+++..++. ..+.++.++=|..--... .+. .|+++....+=|-+.|.
T Consensus 94 ~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~~A~~~---~~~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 94 AGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVREALKA---ERAGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred HhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHHHHHHH---HhCCCCEEEecCCcCCCcCCC
Confidence 444455555 99999999995 6666665654 245677777665322111 122 79999988877777772
Q ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE
Q 012928 348 ----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (453)
Q Consensus 348 ----e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (453)
..+..+..+|..+++. .|||.|.. .-+ -.++..|+..|+|+|-
T Consensus 165 ~~~~~~t~~Lv~ev~~~~~~--iPViAAGG---------I~d---g~~i~AAlalGA~gVq 211 (336)
T COG2070 165 VDLEVSTFALVPEVVDAVDG--IPVIAAGG---------IAD---GRGIAAALALGADGVQ 211 (336)
T ss_pred CCCCccHHHHHHHHHHHhcC--CCEEEecC---------ccC---hHHHHHHHHhccHHHH
Confidence 3345666666665554 89998744 222 3445666667777654
No 442
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=32.93 E-value=70 Score=27.52 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=30.5
Q ss_pred cccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEec
Q 012928 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (453)
Q Consensus 206 ~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~ngG~L~ 248 (453)
.++.+.+++||+|..-.|- .-+|.++.++.++.++-.+.+++
T Consensus 38 ~~ml~sL~kGD~VvT~gGi-~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 38 QELLNSLKKGDEVVTIGGI-VGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHhccCCCEEEEcCCe-EEEEEEEecCcEEEEECCCeEEE
Confidence 4678899999999988764 45788888877665555455554
No 443
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=32.91 E-value=2e+02 Score=23.04 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=38.3
Q ss_pred CeeeecCCCCceeecCCCEEEEEeec-CCCCccEEEecccccccccccC-CEEEEe-CCeeEEEEEEE---eCCeEEEEE
Q 012928 168 PEVRSGDVPQPIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVG-DILLVD-GGMMSLAVKSK---TKDLVKCIV 241 (453)
Q Consensus 168 PkIRtG~l~~~i~L~~G~~v~lt~~~-~~~~~~~I~v~~~~l~~~vk~G-d~IlID-DG~I~L~V~ev---~~~~v~~~V 241 (453)
|+|+.......+....|+.+.|...- +.......|.-... .+..+ .+..+. +|. .|.+..+ +.+...|.+
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~---~~~~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~a 77 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGE---PIESGEEKYSFNEDGS-EMTILDVDKLDEAEYTCIA 77 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCE---ECcCCCCEEEEeCCCC-EEEECCCChhhCEEEEEEE
Confidence 67777654445688999999998762 21222233322111 12222 333333 332 3444443 345689988
Q ss_pred eeC
Q 012928 242 VDG 244 (453)
Q Consensus 242 ~ng 244 (453)
.|.
T Consensus 78 ~N~ 80 (95)
T cd05730 78 ENK 80 (95)
T ss_pred EcC
Confidence 874
No 444
>PRK15108 biotin synthase; Provisional
Probab=32.83 E-value=1.2e+02 Score=31.54 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHHhCCcEEEeec
Q 012928 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNM 132 (453)
Q Consensus 101 TKIi~TiGPss~s~e~i~~Li~aGmnvaRiNf 132 (453)
..+++|+|+- +.+.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 3678899975 49999999999999766653
No 445
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.56 E-value=70 Score=34.94 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=36.4
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHH
Q 012928 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (453)
Q Consensus 105 ~TiGPss~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~ 149 (453)
+-+|.+.+..+.++.|+++|+++.=+..+||.-....++|+.||+
T Consensus 220 aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~ 264 (479)
T PRK07807 220 AAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRA 264 (479)
T ss_pred hhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHH
Confidence 345665667899999999999999999999997776667766665
No 446
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=32.48 E-value=1.1e+02 Score=31.62 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=39.8
Q ss_pred HhhHHHH-HhhhhcCCcEEEeccccCH---------------HHHHHHHHHHHhcCCCceEEE--EecChhhhccHHHHH
Q 012928 267 DKDWEDI-KFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSII 328 (453)
Q Consensus 267 ekD~~DI-~~a~~~gvd~I~lSfV~sa---------------~dv~~v~~~L~~~~~~i~IIa--kIET~~gv~NldeI~ 328 (453)
..+..++ +...+.|+|+|.+. .++. .+...+++ +.+...+++||+ -|-|++ .+.+++
T Consensus 150 ~~~~~~~~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~-v~~~~~~iPVI~nGgI~s~e---da~~~l 224 (333)
T PRK11815 150 YEFLCDFVDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYR-LKRDFPHLTIEINGGIKTLE---EAKEHL 224 (333)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHH-HHHhCCCCeEEEECCcCCHH---HHHHHH
Confidence 3344333 45567899999876 2322 23333333 233223577776 455543 333444
Q ss_pred hhcCEEEEeCCCcc
Q 012928 329 SASDGAMVARGDLG 342 (453)
Q Consensus 329 ~~sDgImIgRGDLg 342 (453)
+.+||+||||+=|+
T Consensus 225 ~~aDgVmIGRa~l~ 238 (333)
T PRK11815 225 QHVDGVMIGRAAYH 238 (333)
T ss_pred hcCCEEEEcHHHHh
Confidence 45899999999654
No 447
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.38 E-value=2.1e+02 Score=29.63 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.|.+.+..+.|-+-.+... -+|++++++-.|.|+.+-.+ +..+..+-..|.+.|+|.+.+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~----------~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDN----------FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455677777788877766554432 46788888778888876332 235556778899999997764
No 448
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=32.06 E-value=89 Score=31.13 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=50.2
Q ss_pred EEEecChhhhccHHHHHhh-----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHH-HcCCCEEEEechhhhhccCCCCc
Q 012928 312 IVKIESADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATNMLESMIDHPTPT 385 (453)
Q Consensus 312 IakIET~~gv~NldeI~~~-----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~-~aGkpvi~aTqmLeSM~~~~~Pt 385 (453)
+.||.=.+- ++.++|++. .|+||||- =+ |.. .....+.+++++ ..+.|++.. |.
T Consensus 19 ~tliDP~k~-~~~~ei~~~~~~~GTDaImIGG-S~----gvt--~~~~~~~v~~ik~~~~lPvilf------------P~ 78 (240)
T COG1646 19 LTLIDPDKT-EEADEIAEAAAEAGTDAIMIGG-SD----GVT--EENVDNVVEAIKERTDLPVILF------------PG 78 (240)
T ss_pred EEEeCcccc-cccHHHHHHHHHcCCCEEEECC-cc----ccc--HHHHHHHHHHHHhhcCCCEEEe------------cC
Confidence 445543332 666777664 69999982 22 221 234566677777 899999984 33
Q ss_pred hHHHHHHHHHHHhCccEEEe----cCc-cc--CCCCHHHHHHHHHHHH
Q 012928 386 RAEVSDIAIAVREGADAVML----SGE-TA--HGKFPLKAVKVMHTVA 426 (453)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmL----s~E-TA--~G~yP~eaV~~m~~I~ 426 (453)
-. +.+..++|+++. ++. +- +|. .+++.+...++.
T Consensus 79 ~~------~~is~~aDavff~svLNS~n~~~i~ga-q~~~a~~~~~~~ 119 (240)
T COG1646 79 SP------SGISPYADAVFFPSVLNSDNPYWIVGA-QVEGAKLVGKLG 119 (240)
T ss_pred Ch------hccCccCCeEEEEEEecCCCcccccch-hhhhhHHHHhhh
Confidence 22 223447887763 322 21 443 355666666655
No 449
>TIGR03424 urea_degr_1 urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=31.96 E-value=1.3e+02 Score=29.11 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=35.8
Q ss_pred ceeecCCCEEEEEeecCCCCccEEEecccccc--------------cccccCCEEEEeCCeeEEEEEEE
Q 012928 178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFV--------------NDVEVGDILLVDGGMMSLAVKSK 232 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~--------------~~vk~Gd~IlIDDG~I~L~V~ev 232 (453)
...|++||.++|+.-.+......+..+.++.. -.+++|+.++=|.|+..++|++-
T Consensus 15 a~~v~~Gq~lri~d~~G~q~~d~~~~na~d~~Er~~~~~T~~~~~~~~l~~G~~l~S~~~rpm~tIveD 83 (198)
T TIGR03424 15 SAVVKAGQTLRIVDLEGNQAVDTLFYNAHDTAERYSAQDTIRAQGNIYLTTGSVLYSNEGNPMLTIVAD 83 (198)
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEEecCCCCccccCHHHHHHHhCcccccCCCEEEeCCCCeeEEEEcc
Confidence 47899999999986432211122233322221 24789999999999999988763
No 450
>PRK07877 hypothetical protein; Provisional
Probab=31.96 E-value=1.8e+02 Score=33.57 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
..+++.+.+.|..+.|.+.-+... -+|++++++-+|.|+=+-.+ +...-.+-.+|.++|+|+|.++
T Consensus 163 ~~a~~~l~~inp~i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~D~----------~~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 163 VVAARRIAELDPYLPVEVFTDGLT-EDNVDAFLDGLDVVVEECDS----------LDVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEc
Confidence 455677888899988888777665 47999998878877654222 3455677789999999999987
No 451
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.91 E-value=5e+02 Score=25.39 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=63.7
Q ss_pred HHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh-hcCEEE-EeC-CCccccCCCC
Q 012928 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAM-VAR-GDLGAELPIE 348 (453)
Q Consensus 272 DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~-~sDgIm-IgR-GDLg~elg~e 348 (453)
-++.+.+.|+|++.+|-. ..++...+.+.+.+.|-...++..=.| -.+.++.|++ ..|.+. +++ |=-|...++.
T Consensus 96 fi~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~ 172 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTELP 172 (242)
T ss_pred HHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC
Confidence 355566889999999543 246777778888877765544444444 3556788887 445333 342 2222222221
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
......+-+..+...+|+.+- .+.=+.+. +..+... +|+++..
T Consensus 173 --~~~~~~i~~lr~~~~~pI~vg---------gGI~~~e~---~~~~~~~-ADgvVvG 215 (242)
T cd04724 173 --DDLKELIKRIRKYTDLPIAVG---------FGISTPEQ---AAEVAKY-ADGVIVG 215 (242)
T ss_pred --hhHHHHHHHHHhcCCCcEEEE---------ccCCCHHH---HHHHHcc-CCEEEEC
Confidence 222233222222347888874 33333333 4445555 8888774
No 452
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=31.86 E-value=3.4e+02 Score=28.34 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=50.9
Q ss_pred cChhhhccHHHHHhhcCEEEEeCCCccccCCC-CCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHH-----H
Q 012928 316 ESADSIPNLHSIISASDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-----V 389 (453)
Q Consensus 316 ET~~gv~NldeI~~~sDgImIgRGDLg~elg~-e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAE-----v 389 (453)
|.+.|....=|-++.+|.|++|||-|-.+++. =-|+.+.+ +-++.-.|++.-.++ |...+.+|.+= +
T Consensus 175 ~~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~e----aLr~~~ap~i~v~n~---~~~~g~~t~~~~~~d~i 247 (323)
T COG0391 175 EKPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAE----ALRETVAPIVYVCNL---MTQAGKETDGLSVEDHI 247 (323)
T ss_pred CCCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHH----HHHhCCCCEEEeccC---CCCCCcccccccHHHHH
Confidence 66666554444455799999999999999965 23333333 333365665543221 11122133222 5
Q ss_pred HHHHHHHHhC-ccEEEecCcc
Q 012928 390 SDIAIAVREG-ADAVMLSGET 409 (453)
Q Consensus 390 ~Dv~nav~~G-~D~vmLs~ET 409 (453)
..+......+ .|.+++...+
T Consensus 248 ~~i~~~~g~~~iD~vivd~~~ 268 (323)
T COG0391 248 AALAQHYGAFVIDAVIVDNDD 268 (323)
T ss_pred HHHHHHhCcccCcEEEECCCC
Confidence 5566666677 8999997543
No 453
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=31.55 E-value=1.3e+02 Score=29.33 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceeecCCCEEEEEeecCCCCccEEEec----------ccccccccccCCEEEE
Q 012928 178 PIILKEGQEFNFTIKRGVSTEDTVSVN----------YDDFVNDVEVGDILLV 220 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~~~~~~~~I~v~----------~~~l~~~vk~Gd~IlI 220 (453)
.++.+.|.+++||.. ..|++. ..-+.++|++||.|++
T Consensus 68 ~i~te~g~~l~LTp~------HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 68 VIETEDGRSLTLTPN------HLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEETTS-EEEE-TT-------EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred EEEcCCCCeEEecCC------cEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 356677788888754 222221 2357789999999999
No 454
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=31.48 E-value=2.1e+02 Score=27.38 Aligned_cols=55 Identities=24% Similarity=0.435 Sum_probs=41.5
Q ss_pred EEEecccccccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEe-------eCcEecccceeecC
Q 012928 200 TVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (453)
Q Consensus 200 ~I~v~~~~l~~~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~V~-------ngG~L~s~KgVnlp 256 (453)
.+.+..+..+..+++|+.|-+|. ++|+|.+++++.+..-+. +=|.++.+.-||+.
T Consensus 23 ~~~i~~~~~~~~l~~g~SIAvnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLE 84 (194)
T PRK09289 23 RLTIEAGKLLSDLKLGDSIAVNG--VCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLE 84 (194)
T ss_pred EEEEEcCccccccccCCEEEEcc--EEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEe
Confidence 45555555555699999999987 889999998888877764 33667777778874
No 455
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=31.35 E-value=1.4e+02 Score=31.18 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred HHHHhhhhcCCcEEEecccc------CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCC
Q 012928 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (453)
Q Consensus 271 ~DI~~a~~~gvd~I~lSfV~------sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGD 340 (453)
+|...|+++|+++|.+|.-- .+.-+..+.+.+...+..+.|+. -.||++=.+|+++ +-||++||--
T Consensus 235 eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~l----DGGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 235 EDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFL----DGGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEE----ecCcccchHHHHHHhcccceEEecCch
Confidence 44566789999999998531 23445566777766677766664 2477777777776 5799999864
Q ss_pred c-cccC----CCCCH-HHHHHHHHHHHHHcCCC
Q 012928 341 L-GAEL----PIEDV-PLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 341 L-g~el----g~e~v-~~aqk~Ii~~c~~aGkp 367 (453)
+ |... |.++| ...+.++-...+-.|.+
T Consensus 311 v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~ 343 (363)
T KOG0538|consen 311 VWGLAAKGEAGVKKVLDILRDEFELTMALSGCR 343 (363)
T ss_pred heeeccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 3333 33333 34455555555555554
No 456
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=30.91 E-value=1.2e+02 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=23.8
Q ss_pred ccccCCEEEEeCCeeEEEEEEEeCCeEEEE
Q 012928 211 DVEVGDILLVDGGMMSLAVKSKTKDLVKCI 240 (453)
Q Consensus 211 ~vk~Gd~IlIDDG~I~L~V~ev~~~~v~~~ 240 (453)
.-++|..|.|+| .|..+|.++.++.|+.-
T Consensus 5 tRk~gE~I~Igd-~I~I~Vl~i~g~~VrlG 33 (69)
T TIGR00202 5 SRKVNESIQIGD-DIEVKVLSVKGDQVKLG 33 (69)
T ss_pred EccCCCEEEeCC-CEEEEEEEEcCCeEEEE
Confidence 458999999998 59999999988877653
No 457
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=30.82 E-value=3.4e+02 Score=26.46 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=59.2
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEe-------cChhhhccHHHH--HhhcCEEEEeCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI-------ESADSIPNLHSI--ISASDGAMVARGD 340 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakI-------ET~~gv~NldeI--~~~sDgImIgRGD 340 (453)
.+.+..+.+.|+..++..- .+.++...+.++..+.+..+....=| .+.+-++.++++ +.....+.|| .
T Consensus 17 ~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aIG--E 93 (255)
T PF01026_consen 17 PEVLERAREAGVSAIIIVS-TDPEDWERVLELASQYPDRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAIG--E 93 (255)
T ss_dssp HHHHHHHHHTTEEEEEEEE-SSHHHHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEEE--E
T ss_pred HHHHHHHHHcCCCEEEEcC-CCHHHhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceeee--e
Confidence 3556777788998775443 45667777777666533322222222 244556677777 4445677775 3
Q ss_pred ccccCCC--CCHHHHH----HHHHHHHHHcCCCEEEEe
Q 012928 341 LGAELPI--EDVPLLQ----EDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 341 Lg~elg~--e~v~~aq----k~Ii~~c~~aGkpvi~aT 372 (453)
.|.+... +.-...| ++.++.|++.++|+++-|
T Consensus 94 iGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~ 131 (255)
T PF01026_consen 94 IGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHC 131 (255)
T ss_dssp EEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred eccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEec
Confidence 3333311 2233455 566788999999999976
No 458
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.81 E-value=6.2e+02 Score=26.20 Aligned_cols=134 Identities=18% Similarity=0.158 Sum_probs=71.1
Q ss_pred HHHHHhhhhcCCcEEEeccc-cCHHHHHHHHHHHHhcCCCceEEEEecCh--hhhccHHHHHhh-----cCEEEEeCCCc
Q 012928 270 WEDIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIISA-----SDGAMVARGDL 341 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV-~sa~dv~~v~~~L~~~~~~i~IIakIET~--~gv~NldeI~~~-----sDgImIgRGDL 341 (453)
.+||+.+.+.|+|.|-+.+- ..++.+.+.-++.++.|.. +...++.. ...+.+.++++. +|.|.+. |=
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~--v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--DT 166 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMD--TVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--DS 166 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCe--EEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--CC
Confidence 46788889999999877643 2333333344445555544 44444332 222333333332 5666663 32
Q ss_pred cccCCCCCHHHHHHHHHHHHHHc---CCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEE---ec-CcccCCCC
Q 012928 342 GAELPIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM---LS-GETAHGKF 414 (453)
Q Consensus 342 g~elg~e~v~~aqk~Ii~~c~~a---Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm---Ls-~ETA~G~y 414 (453)
.|. -.|....+++.+.++. ..|+.+-++ ...-.|-.+ ...|+..|+|.+= .. |+ ..|+=
T Consensus 167 ---~G~-~~P~~v~~~v~~l~~~l~~~i~ig~H~H--------nnlGla~AN-slaAi~aGa~~iD~Sl~GlG~-~aGN~ 232 (337)
T PRK08195 167 ---AGA-LLPEDVRDRVRALRAALKPDTQVGFHGH--------NNLGLGVAN-SLAAVEAGATRIDGSLAGLGA-GAGNT 232 (337)
T ss_pred ---CCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeC--------CCcchHHHH-HHHHHHhCCCEEEecChhhcc-cccCc
Confidence 232 3455556666666654 577887643 222222222 2345677776442 22 23 67888
Q ss_pred HHHHHHH
Q 012928 415 PLKAVKV 421 (453)
Q Consensus 415 P~eaV~~ 421 (453)
|+|.+-.
T Consensus 233 ~tE~lv~ 239 (337)
T PRK08195 233 PLEVLVA 239 (337)
T ss_pred cHHHHHH
Confidence 9887543
No 459
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=30.77 E-value=1e+02 Score=30.72 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCcEEEeec-CC--C----C-hHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCee
Q 012928 114 REMIWKLAEEGMNVARLNM-SH--G----D-HASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEV 170 (453)
Q Consensus 114 ~e~i~~Li~aGmnvaRiNf-SH--g----~-~e~~~~~I~~iR~a~~~~~~~~iaIllDLkGPkI 170 (453)
.+..++++++|+++.=+|. |- | + .++++++...++.+.+..+ +.|.+|+.-|++
T Consensus 26 ~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~---~plsiDT~~~~v 87 (257)
T TIGR01496 26 VAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD---VPISVDTYRAEV 87 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC---CeEEEeCCCHHH
Confidence 3567778999999999984 22 1 2 3466677777777765443 558889988864
No 460
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.76 E-value=5.1e+02 Score=26.39 Aligned_cols=127 Identities=13% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCE-----
Q 012928 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV----- 368 (453)
Q Consensus 295 v~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpv----- 368 (453)
...++.+.+++ .++|...+-...-++.+.+-+.. .+.||+. +-.+|+++=...-+++++.|++.|..|
T Consensus 63 ~~~~~~~a~~~--~VPValHLDH~~~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG 136 (284)
T PRK12737 63 VAIAEVAARKY--NIPLALHLDHHEDLDDIKKKVRAGIRSVMID----GSHLSFEENIAIVKEVVEFCHRYDASVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred ---EEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCC---HHHHHHHHHHHHHHH
Q 012928 369 ---IVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (453)
Q Consensus 369 ---i~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (453)
..-............-+..|+.+-+... |+|++-.+-.|+.|.| |---...+++|....
T Consensus 137 ~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T--gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 137 RLGGQEDDLVVDEKDAMYTNPDAAAEFVERT--GIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred eccCccCCcccccccccCCCHHHHHHHHHHh--CCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 461
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=30.73 E-value=1.4e+02 Score=31.81 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=54.0
Q ss_pred HHHHHhhhhcCCcEEEecccc---------CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEE
Q 012928 270 WEDIKFGVDNQVDFYAVSFVK---------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~---------sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImI 336 (453)
.+|...+++.|+|+|.+|--. +.+-+.++++.+ +.++.||+ --|+.+=.+|+++ +|++++
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~----dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLF----DSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEE----eCCcCcHHHHHHHHHcCCCEEEE
Confidence 356667788999999988431 223333344433 44677775 3577777777776 799999
Q ss_pred eCCCc-cccC-CC---C-CHHHHHHHHHHHHHHcCCC
Q 012928 337 ARGDL-GAEL-PI---E-DVPLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 337 gRGDL-g~el-g~---e-~v~~aqk~Ii~~c~~aGkp 367 (453)
||.=| +... |- + .+..++.++-....-.|+.
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~ 373 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIR 373 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 98766 2211 22 2 2334455555555555543
No 462
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=30.47 E-value=4.5e+02 Score=27.85 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh----cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcC-
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ- 365 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~----sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aG- 365 (453)
+-+|+..+++.- +.+||+| ||.+.++...+ +|+|.++-.-=. .....+.....+.+...+.+
T Consensus 212 tW~di~wlr~~~-----~~PiivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGr---qld~~~~t~~~L~ei~~av~~ 278 (367)
T PLN02493 212 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGAR---QLDYVPATISALEEVVKATQG 278 (367)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHHcCCCEEEECCCCCC---CCCCchhHHHHHHHHHHHhCC
Q ss_pred -CCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 366 -KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 366 -kpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.|++. ..+.-+ -.|++.++..|+|++++.
T Consensus 279 ~~~vi~---------dGGIr~---G~Dv~KALALGA~aV~iG 308 (367)
T PLN02493 279 RIPVFL---------DGGVRR---GTDVFKALALGASGIFIG 308 (367)
T ss_pred CCeEEE---------eCCcCc---HHHHHHHHHcCCCEEEEc
No 463
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=30.42 E-value=1.3e+02 Score=30.52 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=57.6
Q ss_pred CCCCCCHhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcC------CCceEEEEecChhhhccHHHHHhhcCEE
Q 012928 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN------ADIHVIVKIESADSIPNLHSIISASDGA 334 (453)
Q Consensus 261 ~lp~ltekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~------~~i~IIakIET~~gv~NldeI~~~sDgI 334 (453)
.+|.+|..|.+.+..- .--+|-+- .|++.+-...-..+.+.| ..|.|=..+|++ -+..-++++..|.+
T Consensus 116 s~p~vT~~dF~kvdl~---qy~WihfE-~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en~--req~~~l~am~DyV 189 (308)
T KOG2947|consen 116 SLPDVTATDFEKVDLT---QYGWIHFE-ARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVENP--REQLFQLFAMCDYV 189 (308)
T ss_pred CCccccHHHhhhcccc---eeeeEEEe-cCChHHHHHHHHHHHHhhcCCCccceEEEEEEecCc--HHHHHHHhhcccEE
Confidence 5788898887755432 11233222 244444333333333333 234455677775 34456666778988
Q ss_pred EEeCCCccccCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 012928 335 MVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (453)
Q Consensus 335 mIgRGDLg~elg~e~v~~aqk~Ii~~c~~a-Gkpvi~a 371 (453)
++ +-|++-.+|+..=.++-..+..+..+- -|||++.
T Consensus 190 f~-sK~~a~~~gfks~rea~~~l~~r~~~~~pkpv~I~ 226 (308)
T KOG2947|consen 190 FV-SKDVAKHLGFKSPREACEGLYGRVPKGKPKPVLIC 226 (308)
T ss_pred EE-EHHHHhhhccCCHHHHHHHHHhhcccCCCCcEEEe
Confidence 86 689999999854444444443333222 4678775
No 464
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=30.40 E-value=3.6e+02 Score=26.87 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=55.6
Q ss_pred HHHHHHhcCCCceEEEEecChhhhccHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh
Q 012928 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (453)
Q Consensus 298 v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL 375 (453)
+++.|.+...-...+..+-++. +-||+.. .|.++|. .|=|.-.+..+ ..++.+|+.+|.++++
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~----~~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV----- 74 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPI----TTEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV----- 74 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcH----HHHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE-----
Confidence 5566655333344555555554 4455554 6999984 12233344444 4688899999999988
Q ss_pred hhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.-|.++. ..+.+++..|+++||+-
T Consensus 75 ----Rvp~~~~---~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 ----RVPTNEP---VIIKRLLDIGFYNFLIP 98 (256)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCeeeec
Confidence 4445544 45668888999999984
No 465
>PRK08328 hypothetical protein; Provisional
Probab=30.23 E-value=2.7e+02 Score=27.03 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEE-Eechhh
Q 012928 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNMLE 376 (453)
Q Consensus 298 v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~-aTqmLe 376 (453)
+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-..|+++|+|++. ++.=+.
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHGAVEGTY 155 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEeeccCE
Confidence 455667778887776644433 346788888778877765222 23555667789999999775 333344
Q ss_pred hhcc
Q 012928 377 SMID 380 (453)
Q Consensus 377 SM~~ 380 (453)
.++.
T Consensus 156 G~v~ 159 (231)
T PRK08328 156 GQVT 159 (231)
T ss_pred EEEE
Confidence 4443
No 466
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=30.22 E-value=3.9e+02 Score=26.38 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCceEEEEecChhhhccHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechh
Q 012928 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (453)
Q Consensus 298 v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmL 375 (453)
+++.|.+...-..++..+=++..+ |++.. .|.++|.-.| +......++. ++.+++..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~----e~~~~~g~D~v~iDlEH-----~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAA----EICAGAGFDWLLIDGEH-----APNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHH----HHHHhcCCCEEEEeccC-----CCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 455565422234455555555443 34433 7999994222 2234444444 77888888888776
Q ss_pred hhhccCCCCchHHHHHHHHHHHhCccEEEec
Q 012928 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (453)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (453)
.-+.+.. .++..++..|+|+||+-
T Consensus 68 ----Rv~~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ----RPAIGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred ----ECCCCCH---HHHHHHhCCCCCEEEec
Confidence 4444444 37889999999999994
No 467
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.07 E-value=4.9e+02 Score=27.47 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=46.7
Q ss_pred ceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCC-HHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCch
Q 012928 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED-VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 386 (453)
Q Consensus 309 i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~-v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~Ptr 386 (453)
+.+..++......+.++.+.++ +|.|.+....-....+... -+ ..+.+.+++.++|+|.. ...|.
T Consensus 132 V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~---~~i~~~ik~~~ipVIaG----------~V~t~ 198 (368)
T PRK08649 132 VIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP---LNLKEFIYELDVPVIVG----------GCVTY 198 (368)
T ss_pred EEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH---HHHHHHHHHCCCCEEEe----------CCCCH
Confidence 4444455444566666666665 7989884321111111111 11 22455566679998752 24443
Q ss_pred HHHHHHHHHHHhCccEEEecCc
Q 012928 387 AEVSDIAIAVREGADAVMLSGE 408 (453)
Q Consensus 387 AEv~Dv~nav~~G~D~vmLs~E 408 (453)
. ++-.++..|+|+||...+
T Consensus 199 e---~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 199 T---TALHLMRTGAAGVLVGIG 217 (368)
T ss_pred H---HHHHHHHcCCCEEEECCC
Confidence 3 445666789999998633
No 468
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.97 E-value=2.5e+02 Score=29.30 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.+.+.+..+.+.+.-+... -+|++++++-.|.|+-+-.+ +..+..+-+.|++.++|++.+
T Consensus 192 ~~~~~~l~~~np~v~v~~~~~~~~-~~~~~~~~~~~D~Vv~~~d~----------~~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 192 DSAAQRLAALNPDVQVEAVQERVT-SDNVEALLQDVDVVVDGADN----------FPTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-hHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345566766677766654333332 25788888878887765322 235667888999999998766
No 469
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=29.76 E-value=2.4e+02 Score=26.98 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=47.1
Q ss_pred CCCcEEEEecC--CCCCC----HHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcCCCc-EEEEeecCC
Q 012928 98 RRKTKIVCTIG--PSTSS----REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKA-VAIMLDTKG 167 (453)
Q Consensus 98 ~r~TKIi~TiG--Pss~s----~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~~~~-iaIllDLkG 167 (453)
..++|||.+-= ..+.+ .+.+++|.+.|.++++|-..-.+.++..++.+..+++.+..+ .| +++.+--.|
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~-~p~i~~~MG~~G 186 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPD-IPVIAISMGELG 186 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTS-SEEEEEEETGGG
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccC-CcEEEEEcCCCc
Confidence 45789998873 22222 366788999999999999999999999998888888876633 44 444443333
No 470
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.73 E-value=5.7e+02 Score=25.46 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCCHhhHHHHH-hhhhcCCcEEEeccc---------cCHHHHHHHHHHHHhcCCCceEE--EEecChhh--------hcc
Q 012928 264 SITDKDWEDIK-FGVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHVI--VKIESADS--------IPN 323 (453)
Q Consensus 264 ~ltekD~~DI~-~a~~~gvd~I~lSfV---------~sa~dv~~v~~~L~~~~~~i~II--akIET~~g--------v~N 323 (453)
.++..++..|. ...+.|+|.|=+.+- -+.++.+.++...+. ..+.++. +.-.+.-+ .+.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~-~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA-MPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh-CCCCceehhcccccccCccCCCcHHHHH
Confidence 35666766664 345789998855442 244555545444332 2333333 22221111 111
Q ss_pred -HHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCc
Q 012928 324 -LHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGA 400 (453)
Q Consensus 324 -ldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~ 400 (453)
++...+. .|.|-+. .+..++. ..+..++.++++|+.+..+ .+|...+..+...+.+.+.. ...|+
T Consensus 96 di~~~~~~g~~~iri~-------~~~~~~~-~~~~~i~~ak~~G~~v~~~----i~~~~~~~~~~~~~~~~~~~~~~~Ga 163 (275)
T cd07937 96 FVEKAAKNGIDIFRIF-------DALNDVR-NLEVAIKAVKKAGKHVEGA----ICYTGSPVHTLEYYVKLAKELEDMGA 163 (275)
T ss_pred HHHHHHHcCCCEEEEe-------ecCChHH-HHHHHHHHHHHCCCeEEEE----EEecCCCCCCHHHHHHHHHHHHHcCC
Confidence 1111222 4655553 3333333 3466778889999876642 13334456666666666544 55699
Q ss_pred cEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 401 DAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
|.+.|. +|.=...|.+.-++++.+..+.
T Consensus 164 ~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 164 DSICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred CEEEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 999995 8888889999988888887654
No 471
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=29.43 E-value=98 Score=32.71 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHhhhhcCCcEEEecc-------------ccCHH---HHHHH-HHHHHhcC-CCceEEEEecChhhhccHHHHHhh-
Q 012928 270 WEDIKFGVDNQVDFYAVSF-------------VKDAK---VVHEL-KDYLKSCN-ADIHVIVKIESADSIPNLHSIISA- 330 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSf-------------V~sa~---dv~~v-~~~L~~~~-~~i~IIakIET~~gv~NldeI~~~- 330 (453)
.++...+++.|+|+|...- +..+. ++..+ ++|+.+.+ ..+.||| .-|+.+-.+|+++
T Consensus 199 ~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIA----dGGI~tg~di~kAl 274 (369)
T TIGR01304 199 YTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA----DGGIETSGDLVKAI 274 (369)
T ss_pred HHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE----eCCCCCHHHHHHHH
Confidence 3455555678999986331 11222 23222 45677666 4588887 3466666666665
Q ss_pred ---cCEEEEeCC
Q 012928 331 ---SDGAMVARG 339 (453)
Q Consensus 331 ---sDgImIgRG 339 (453)
+|++|+|+.
T Consensus 275 AlGAdaV~iGt~ 286 (369)
T TIGR01304 275 ACGADAVVLGSP 286 (369)
T ss_pred HcCCCEeeeHHH
Confidence 799999853
No 472
>PRK14852 hypothetical protein; Provisional
Probab=29.21 E-value=2e+02 Score=34.32 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
..+++.+.+.|..+.|-+--|.. .-+|++++++..|.|+-+-.++. ..++..+...|++.|+|+|.++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~--------~~~rr~l~~~c~~~~IP~I~ag 456 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFA--------LDIRRRLFNRALELGIPVITAG 456 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCcc--------HHHHHHHHHHHHHcCCCEEEee
Confidence 34566677778877766544433 33789999988898875422221 2466788889999999999764
No 473
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=29.17 E-value=5.6e+02 Score=25.14 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=39.9
Q ss_pred HhhHHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhh-hccHHHHHhh-cCEEEEe
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-IPNLHSIISA-SDGAMVA 337 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~g-v~NldeI~~~-sDgImIg 337 (453)
+.-++-.+...+.|+|.|.++-..+.+++..+.+.+ +.+++... ++.+ ..+++++.+. ..-+.++
T Consensus 160 ~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~-----~~Pl~~~~-~~~~~~~~~~~l~~lG~~~v~~~ 226 (243)
T cd00377 160 DEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAP-----DVPLNVNM-TPGGNLLTVAELAELGVRRVSYG 226 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcC-----CCCEEEEe-cCCCCCCCHHHHHHCCCeEEEEC
Confidence 344566677789999999988777777666655432 34555442 2222 2567777665 4555553
No 474
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=29.08 E-value=42 Score=34.65 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=13.1
Q ss_pred hhhcCCcEEEeccccCHHHH
Q 012928 276 GVDNQVDFYAVSFVKDAKVV 295 (453)
Q Consensus 276 a~~~gvd~I~lSfV~sa~dv 295 (453)
+.+.|+++| -|||.+-.|.
T Consensus 165 aa~AGa~~I-SPfVgRi~d~ 183 (313)
T cd00957 165 CAEAGVTLI-SPFVGRILDW 183 (313)
T ss_pred HHHcCCCEE-EeecchHHHh
Confidence 456788776 5888777653
No 475
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.90 E-value=6e+02 Score=25.43 Aligned_cols=131 Identities=17% Similarity=0.220 Sum_probs=69.5
Q ss_pred HHHHHhhhhcCCcEEEec-cccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccc-cCC
Q 012928 270 WEDIKFGVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA-ELP 346 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lS-fV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~-elg 346 (453)
.-.|..+...|+|.|.+- -+=+.+.+.++-++..+.| +..+.-+-|.+-+ +..+.. ++-|.|---||.. ++.
T Consensus 121 ~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lG--le~lVEVh~~~El---~~al~~~a~iiGINnRdL~tf~vd 195 (254)
T PF00218_consen 121 PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLG--LEALVEVHNEEEL---ERALEAGADIIGINNRDLKTFEVD 195 (254)
T ss_dssp HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT---EEEEEESSHHHH---HHHHHTT-SEEEEESBCTTTCCBH
T ss_pred HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcC--CCeEEEECCHHHH---HHHHHcCCCEEEEeCccccCcccC
Confidence 345666778899987652 2334555555555555543 3344444443332 222222 6777777667732 222
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccCCCCHHHHHHHH
Q 012928 347 IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (453)
Q Consensus 347 ~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (453)
+. .-.++..... ...+.++ .++.-+.. |+..+...|+|+++....--....|-++++.|
T Consensus 196 ~~----~~~~l~~~ip--~~~~~is--------eSGI~~~~---d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 196 LN----RTEELAPLIP--KDVIVIS--------ESGIKTPE---DARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp TH----HHHHHHCHSH--TTSEEEE--------ESS-SSHH---HHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred hH----HHHHHHhhCc--cceeEEe--------ecCCCCHH---HHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 22 2233333333 2245554 56777754 56677788999999854444667788877654
No 476
>PRK05269 transaldolase B; Provisional
Probab=28.84 E-value=28 Score=35.99 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=31.3
Q ss_pred hhhhcCCcEEEeccccCHHHH---------------------HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh
Q 012928 275 FGVDNQVDFYAVSFVKDAKVV---------------------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (453)
Q Consensus 275 ~a~~~gvd~I~lSfV~sa~dv---------------------~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~ 330 (453)
.+.+.|+++| -|||.+-.|. .++.++.++.+-++.|++ .+++|.++|.+.
T Consensus 166 ~aa~AGa~~I-SPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~-----ASfrn~~~v~~l 236 (318)
T PRK05269 166 ACAEAGVFLI-SPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMG-----ASFRNTGQILEL 236 (318)
T ss_pred HHHHcCCCEE-EeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEe-----eccCCHHHHHHH
Confidence 3456788775 5888887764 233444555555666665 377777777753
No 477
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=28.81 E-value=3.2e+02 Score=27.89 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCcEEEEecCCCCCCH----HHHHHHHHhCCcEEEeecCCCC-----hHHHHHHHHHHHHHHhhcCCCcEEEEeec
Q 012928 99 RKTKIVCTIGPSTSSR----EMIWKLAEEGMNVARLNMSHGD-----HASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (453)
Q Consensus 99 r~TKIi~TiGPss~s~----e~i~~Li~aGmnvaRiNfSHg~-----~e~~~~~I~~iR~a~~~~~~~~iaIllDL 165 (453)
.+....+|+|....+. +..+++.++|.+.+.|...|+. .+.-.+.++.+| +..+ ..+.|++|.
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir---~~~g-~~~~l~vDa 196 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVR---EAVG-PDVDLMVDA 196 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHH---HhhC-CCCEEEEEC
Confidence 3455667776654233 3456678899999999999876 454445555555 4454 445677775
No 478
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.80 E-value=1.1e+02 Score=31.35 Aligned_cols=61 Identities=5% Similarity=0.093 Sum_probs=46.4
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhh--ccHHHHHhh-cCEEEEeC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv--~NldeI~~~-sDgImIgR 338 (453)
.+++..+++.|+|.|.+=.. +++++.++.+++. .+ .+||-.-|+ +|+.++++. .|.|.+|.
T Consensus 215 leea~eA~~aGaDiImLDnm-spe~l~~av~~~~---~~----~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNF-TLDMMREAVRVTA---GR----AVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhc---CC----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 56777788999999999764 7888887776663 22 256766655 788888887 89999974
No 479
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=28.76 E-value=2.6e+02 Score=29.02 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 297 ~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+++.+.+.|..+.+-+-.+.. --+|++++++-.|.|+.+-. -+..+..+-..|.+.|+|.+.+
T Consensus 84 aa~~~l~~inp~v~v~~~~~~~-~~~~~~~~~~~~DlVid~~D----------n~~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 84 AAKKRLEEINSDVRVEAIVQDV-TAEELEELVTGVDLIIDATD----------NFETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred HHHHHHHHHCCCcEEEEEeccC-CHHHHHHHHcCCCEEEEcCC----------CHHHHHHHHHHHHHhCCCEEEE
Confidence 3456677778877766655443 24678888877888777622 2346678889999999998764
No 480
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.72 E-value=5.5e+02 Score=27.05 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCc---cccCCCCCHHHHHHHHHHHHHHcCCC
Q 012928 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL---GAELPIEDVPLLQEDIIRRCRSMQKP 367 (453)
Q Consensus 292 a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDL---g~elg~e~v~~aqk~Ii~~c~~aGkp 367 (453)
.+.+..+...+.+....++|...+-....++.+.+-+.. .+.|||..-.| -..+++++=...-+++++.|+++|..
T Consensus 59 ~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~ 138 (347)
T PRK09196 59 EPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVS 138 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCe
Q ss_pred EEEEechh-----------hhhccCC----CCchHHHHHHHHHHHh-CccEEEecCcccCCCC-----HH---HHHHHHH
Q 012928 368 VIVATNML-----------ESMIDHP----TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKF-----PL---KAVKVMH 423 (453)
Q Consensus 368 vi~aTqmL-----------eSM~~~~----~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~y-----P~---eaV~~m~ 423 (453)
|=-==..+ +...... .-......++..++.. |+|++-.+--|+.|.| |. --...+.
T Consensus 139 VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~ 218 (347)
T PRK09196 139 VEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIK 218 (347)
T ss_pred EEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHH
Q ss_pred HHHHHH
Q 012928 424 TVALRT 429 (453)
Q Consensus 424 ~I~~~a 429 (453)
+|-.+.
T Consensus 219 eI~~~v 224 (347)
T PRK09196 219 EIHARL 224 (347)
T ss_pred HHHhcC
No 481
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=28.60 E-value=3.4e+02 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=27.7
Q ss_pred ccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Q 012928 322 PNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (453)
Q Consensus 322 ~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aT 372 (453)
.++++++..+|.++-. ..|..-...++.|.++|+|+++.|
T Consensus 59 ~~l~~~~~~~DVvIDf-----------T~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEADVVIDF-----------TNPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-SEEEEE-----------S-HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccCCEEEEc-----------CChHHhHHHHHHHHhCCCCEEEEC
Confidence 6788888778865532 267888889999999999998865
No 482
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.57 E-value=6.9e+02 Score=25.98 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=64.9
Q ss_pred HHHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccccCCCC
Q 012928 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (453)
Q Consensus 270 ~~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e 348 (453)
.+.++.+++.++.+|.++|- ++..+.. +++ ..+.++..+-|..-... ..+. +|+|++--.+=|-+.|..
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G-~P~~~~~----lk~--~Gi~v~~~v~s~~~A~~---a~~~GaD~vVaqG~EAGGH~G~~ 141 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGG-RPDQARA----LEA--IGISTYLHVPSPGLLKQ---FLENGARKFIFEGRECGGHVGPR 141 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCC-ChHHHHH----HHH--CCCEEEEEeCCHHHHHH---HHHcCCCEEEEecCcCcCCCCCC
Confidence 35677788999999988875 4544433 333 36788888877643322 2233 899998655555555421
Q ss_pred CHHHHHHHHHHHHHH-------cCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCc--------cEEEe
Q 012928 349 DVPLLQEDIIRRCRS-------MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA--------DAVML 405 (453)
Q Consensus 349 ~v~~aqk~Ii~~c~~-------aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~--------D~vmL 405 (453)
....+-..++.+... ...|||.|-. +-+ -..++-+...|+ ++|.+
T Consensus 142 ~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGG---------I~d---gr~~aaalaLGA~~~~~Ga~~GV~m 201 (320)
T cd04743 142 SSFVLWESAIDALLAANGPDKAGKIHLLFAGG---------IHD---ERSAAMVSALAAPLAERGAKVGVLM 201 (320)
T ss_pred CchhhHHHHHHHHHHhhcccccCCccEEEEcC---------CCC---HHHHHHHHHcCCcccccccccEEEE
Confidence 111122233333221 2689998743 222 334456666666 67764
No 483
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=28.56 E-value=2.4e+02 Score=28.40 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCHhhHHH-HHhhhhcC-CcEEEeccccCH--HHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCC
Q 012928 265 ITDKDWED-IKFGVDNQ-VDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG 339 (453)
Q Consensus 265 ltekD~~D-I~~a~~~g-vd~I~lSfV~sa--~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRG 339 (453)
|.+.++++ ++.++..+ +|+|.++=..+. -|...++.+-+ ...++++ -|=+--..+|+.++++.+||+.+|-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~-~~~~~Pv--llggGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKE-TVKDTPV--LAGSGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh-ccCCCeE--EEECCCCHHHHHHHHhhCCEEEECCC
Confidence 45555544 34455555 999999876554 44555554322 1223443 34466677999999999999999854
No 484
>PF09347 DUF1989: Domain of unknown function (DUF1989); InterPro: IPR018959 This entry represents proteins that are functionally uncharacterised. ; PDB: 3ORU_A 3SIY_C 3DI4_A.
Probab=28.34 E-value=1.4e+02 Score=27.97 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=32.1
Q ss_pred ceeecCCCEEEEEeecCCCCccEEEecccccc--------------cccccCCEEEEeCCeeEEEEEEE
Q 012928 178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFV--------------NDVEVGDILLVDGGMMSLAVKSK 232 (453)
Q Consensus 178 ~i~L~~G~~v~lt~~~~~~~~~~I~v~~~~l~--------------~~vk~Gd~IlIDDG~I~L~V~ev 232 (453)
...|++||.++|+.-.+...-..+-.+.++.. -.+++|+.++=+.|+..+++++-
T Consensus 11 a~~v~rG~~lri~d~~G~q~~d~~~~~a~d~~Er~s~~~T~~~~~~~~l~~G~~L~S~~~rpm~tIv~D 79 (166)
T PF09347_consen 11 AFRVKRGQVLRITDPEGNQVVDLLAYNADDPSERLSMGDTRKAQHTIYLTTGDVLYSNMGRPMLTIVED 79 (166)
T ss_dssp EEEE-TT-EEEEEESSSS--EEEEEEETTEEEEEB-HHHHHHHHCBSC--TT-EEEBTTTSEEEEEEEE
T ss_pred EEEECCCCEEEEEeCCCCceeEEEEEecCCCcEEeCHHHHHHhhcccccCCCCEEEcCCCCeEEEEEcc
Confidence 46799999999986543222223333333221 24689999999999999998764
No 485
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=28.25 E-value=59 Score=31.27 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhCCcEEEeecCCCCh-----------HHHHHHHHHHHHHHhhcCCCcEEEEeecCCC
Q 012928 112 SSREMIWKLAEEGMNVARLNMSHGDH-----------ASHQKTIDLVKEYNSQFEDKAVAIMLDTKGP 168 (453)
Q Consensus 112 ~s~e~i~~Li~aGmnvaRiNfSHg~~-----------e~~~~~I~~iR~a~~~~~~~~iaIllDLkGP 168 (453)
...+.++.|-..|+|..||-+..... ..++.+-+.|+.+ ++ +-+.+++|+-+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a-~~---~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAA-QA---YGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHH-HH---TT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHH-Hh---CCCeEEEEeccC
Confidence 56788999999999999999986322 2334444444443 33 347778888764
No 486
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=28.23 E-value=1.4e+02 Score=29.77 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=60.2
Q ss_pred hhhccHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHH
Q 012928 319 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV 396 (453)
Q Consensus 319 ~gv~NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav 396 (453)
....+++++++. .|.++|+ .| ...-..++.+|-++||+|++ .+-..+|-+|...+..+.
T Consensus 54 ~~~~~~~~ll~~~~iD~V~Ia-------tp----~~~H~e~~~~AL~aGkhVl~--------EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 54 KAYTDLEELLADPDIDAVYIA-------TP----NALHAELALAALEAGKHVLC--------EKPLALTLEEAEELVELA 114 (342)
T ss_pred cccCCHHHHhcCCCCCEEEEc-------CC----ChhhHHHHHHHHhcCCEEEE--------cCCCCCCHHHHHHHHHHH
Confidence 577889999986 6899996 22 23445667889999999998 355577888888887777
Q ss_pred HhCccEEEecCcccCCCCHHHHHHHHHHHHHHHh
Q 012928 397 REGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (453)
Q Consensus 397 ~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (453)
... .+.|.-. -.-.|- .+++.+++++.+-+
T Consensus 115 ~~~--~~~l~v~-~~~Rf~-p~~~~~k~li~~g~ 144 (342)
T COG0673 115 RKA--GVKLMVG-FNRRFD-PAVQALKELIDSGA 144 (342)
T ss_pred HHc--CCceeee-hhhhcC-HHHHHHHHHHhcCC
Confidence 754 3333211 122222 57888888877653
No 487
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.15 E-value=2.6e+02 Score=23.25 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=42.5
Q ss_pred hhccHHHHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHH
Q 012928 320 SIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR 397 (453)
Q Consensus 320 gv~NldeI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (453)
...+++++++. .|.++|+-.+ .....++..|-++|+++++= +-...+..|...+..+..
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~-----------~~h~~~~~~~l~~g~~v~~E--------KP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPP-----------SSHAEIAKKALEAGKHVLVE--------KPLALTLEEAEELVEAAK 110 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSG-----------GGHHHHHHHHHHTTSEEEEE--------SSSSSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhcCCEEEEecCC-----------cchHHHHHHHHHcCCEEEEE--------cCCcCCHHHHHHHHHHHH
Confidence 45568888884 8999997322 45677888899999999982 444567777777766554
No 488
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.11 E-value=5.3e+02 Score=25.72 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHcCCCEEE-EechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 362 RSMQKPVIV-ATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 362 ~~aGkpvi~-aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
+..+.||++ +|+- .+..... ..-..-|+..|+|++|+
T Consensus 191 ~~~~~pV~~ds~Hs------~G~r~~~-~~~~~aAva~Ga~gl~i 228 (260)
T TIGR01361 191 KETHLPIIVDPSHA------AGRRDLV-IPLAKAAIAAGADGLMI 228 (260)
T ss_pred HhhCCCEEEcCCCC------CCccchH-HHHHHHHHHcCCCEEEE
Confidence 346899999 6642 1111111 11122578999999887
No 489
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.06 E-value=6.4e+02 Score=25.50 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HhhHHHHHhhhhcCCcEEEeccc----------------cCHHHHHHHHHHHHhcCCCceEEEEe-----cChhhhccHH
Q 012928 267 DKDWEDIKFGVDNQVDFYAVSFV----------------KDAKVVHELKDYLKSCNADIHVIVKI-----ESADSIPNLH 325 (453)
Q Consensus 267 ekD~~DI~~a~~~gvd~I~lSfV----------------~sa~dv~~v~~~L~~~~~~i~IIakI-----ET~~gv~Nld 325 (453)
+.-.+..+.+.+.|+|+|-+.+- ++++-+.++-+.+.+.=. ++|.+|| ++..-...+-
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~~~~~~~~~~~a 153 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGWDDAHINAVEAA 153 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcccCCCcchHHHHH
Q ss_pred HHHhh--cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHH-HhCccE
Q 012928 326 SIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADA 402 (453)
Q Consensus 326 eI~~~--sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~ 402 (453)
..+.. +|+|.+....-..-..-+.-...-++|.+... +|++. ....-+ ..|+..++ ..|+|+
T Consensus 154 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~---ipvi~---------nGgI~~---~~da~~~l~~~gad~ 218 (319)
T TIGR00737 154 RIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR---IPVIG---------NGDIFS---PEDAKAMLETTGCDG 218 (319)
T ss_pred HHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC---CcEEE---------eCCCCC---HHHHHHHHHhhCCCE
Q ss_pred EEec
Q 012928 403 VMLS 406 (453)
Q Consensus 403 vmLs 406 (453)
||+.
T Consensus 219 Vmig 222 (319)
T TIGR00737 219 VMIG 222 (319)
T ss_pred EEEC
No 490
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.99 E-value=4.6e+02 Score=26.29 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
+.-.-.+...|+|++|+..=--...-+-+.+++.+.|+..+
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~ 129 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST 129 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc
Confidence 44455556667777776432111122355666677766544
No 491
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=27.86 E-value=3.5e+02 Score=25.58 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 351 ~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
..+....++.++++|+++.+-|- ..| .....++..|+|+++-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wtv--------n~~-----~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWTV--------NDP-----DDMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEcC--------CCH-----HHHHHHHHcCCCEEeC
Confidence 33457899999999999988651 122 3346778889999864
No 492
>PLN02535 glycolate oxidase
Probab=27.79 E-value=7.5e+02 Score=26.15 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEE-ecChhhhccHHHHHhh-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHH--cCC
Q 012928 291 DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS--MQK 366 (453)
Q Consensus 291 sa~dv~~v~~~L~~~~~~i~IIak-IET~~gv~NldeI~~~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~--aGk 366 (453)
+-+++..+++.. +.+||+| |-|++-. ....+. +|+|.+.-.- +..++.. +.....+.+...+ ...
T Consensus 211 tW~~i~~lr~~~-----~~PvivKgV~~~~dA---~~a~~~GvD~I~vsn~G-Gr~~d~~--~~t~~~L~ev~~av~~~i 279 (364)
T PLN02535 211 SWKDIEWLRSIT-----NLPILIKGVLTREDA---IKAVEVGVAGIIVSNHG-ARQLDYS--PATISVLEEVVQAVGGRV 279 (364)
T ss_pred CHHHHHHHHhcc-----CCCEEEecCCCHHHH---HHHHhcCCCEEEEeCCC-cCCCCCC--hHHHHHHHHHHHHHhcCC
Confidence 456666666532 4567776 5444332 222223 7888775211 2223221 1112222222222 247
Q ss_pred CEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEecCcccC
Q 012928 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (453)
Q Consensus 367 pvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (453)
|+|.. .+.-+ -.|++.++..|+|+|++..---.
T Consensus 280 pVi~d---------GGIr~---g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 280 PVLLD---------GGVRR---GTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred CEEee---------CCCCC---HHHHHHHHHcCCCEEEECHHHHh
Confidence 87763 44444 67899999999999998655433
No 493
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=27.64 E-value=1.2e+02 Score=28.06 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=37.2
Q ss_pred hhhccHHHHHhh--cC--EEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 012928 319 DSIPNLHSIISA--SD--GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 319 ~gv~NldeI~~~--sD--gImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~a 371 (453)
.+++.+++.+.. .| -||+|-.|+....+.+++..-.+.++..++++|..+++.
T Consensus 58 ~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 58 QGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 344445554432 45 577788898766666778888899999999988776654
No 494
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.57 E-value=6e+02 Score=24.96 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=84.2
Q ss_pred CCHhhHHHH-HhhhhcCCcEEEeccc------------cCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHh--
Q 012928 265 ITDKDWEDI-KFGVDNQVDFYAVSFV------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-- 329 (453)
Q Consensus 265 ltekD~~DI-~~a~~~gvd~I~lSfV------------~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~-- 329 (453)
++..++..| +...+.|+|.|=+.|. ....+...++.+... ..+.++.+.+- .+..|.++|-.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~--~~~~~~~~i~~a~ 95 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLL--PGIGTVDDLKMAA 95 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEec--CCccCHHHHHHHH
Confidence 355666444 4556789998866421 112233333333332 23455555432 22333343333
Q ss_pred -h-cCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEec
Q 012928 330 -A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 406 (453)
Q Consensus 330 -~-sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs 406 (453)
. .|.+-+. .+..++. ..+..++.+++.|..+.+.- ++. ..-+..++.+.+.. ...|+|.+.|
T Consensus 96 ~~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~----~~~--~~~~~~~~~~~~~~~~~~G~d~i~l- 160 (263)
T cd07943 96 DLGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFL----MMS--HMASPEELAEQAKLMESYGADCVYV- 160 (263)
T ss_pred HcCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEE----Eec--cCCCHHHHHHHHHHHHHcCCCEEEE-
Confidence 2 5655542 2333333 34668899999999876642 111 22344566666555 4459999988
Q ss_pred CcccCCCCHHHHHHHHHHHHHHH
Q 012928 407 GETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
.+|.=..+|.+.-+.++.+-.+.
T Consensus 161 ~DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 161 TDSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred cCCCCCcCHHHHHHHHHHHHHhC
Confidence 68988999998888887776544
No 495
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.50 E-value=2.7e+02 Score=28.18 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred cChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHH
Q 012928 316 ESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (453)
Q Consensus 316 ET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na 395 (453)
|+..|+-...|=....=.|.++++-+.. .....+...+...|+++..||.+ +.+-.. ....+..+
T Consensus 29 e~~~avi~aAe~~~~Pvii~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpv~l----------HlDH~~-~~e~i~~A 93 (281)
T PRK06806 29 EMVMGAIKAAEELNSPIILQIAEVRLNH----SPLHLIGPLMVAAAKQAKVPVAV----------HFDHGM-TFEKIKEA 93 (281)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCcchhcc----CChHHHHHHHHHHHHHCCCCEEE----------ECCCCC-CHHHHHHH
Q ss_pred HHhCccEEEecCcccCCCCHHHHHHHHHHHHHHH
Q 012928 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (453)
Q Consensus 396 v~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (453)
+..|++.||+-+-+.-..-=++..+.+.++|...
T Consensus 94 l~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~ 127 (281)
T PRK06806 94 LEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY 127 (281)
T ss_pred HHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc
No 496
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=27.31 E-value=2.1e+02 Score=22.69 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhCCcEEEeecCCCChHHHHHHHHHHHHHHhhcC
Q 012928 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (453)
Q Consensus 112 ~s~e~i~~Li~aGmnvaRiNfSHg~~e~~~~~I~~iR~a~~~~~ 155 (453)
++...+.+.++.| ++.=+||++-+.+..++.++.+.-+...++
T Consensus 10 ~D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~ 52 (73)
T PF04472_consen 10 EDAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSGAVYALD 52 (73)
T ss_dssp GGHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhchheeeC
Confidence 5667788999999 677899999999999999999999887776
No 497
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.28 E-value=4.7e+02 Score=24.56 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=57.9
Q ss_pred CHhhH-HHHHhhhhcCCcEEEeccccCHHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhh-cCEEEEeCCCccc
Q 012928 266 TDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (453)
Q Consensus 266 tekD~-~DI~~a~~~gvd~I~lSfV~sa~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~-sDgImIgRGDLg~ 343 (453)
+..+. +-++.+++.|+++|-+.+ +++...+.+. .+.+....+.+ .-=|.--.++++.-+++ +||++.+--
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~-k~~~~~e~~~-~~~~~~~~~~~--g~gtvl~~d~~~~A~~~gAdgv~~p~~---- 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITW-NSDQPAELIS-QLREKLPECII--GTGTILTLEDLEEAIAAGAQFCFTPHV---- 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCCCHHHHHH-HHHHhCCCcEE--eEEEEEcHHHHHHHHHcCCCEEECCCC----
Confidence 34443 334667888999998875 4443333222 22222221111 11111122444544444 788887521
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEechhhhhccCCCCchHHHHHHHHHHHhCccEEEe
Q 012928 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (453)
Q Consensus 344 elg~e~v~~aqk~Ii~~c~~aGkpvi~aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (453)
-..++..|+..+.+.+.- .-| .+++..+...|+|.+=+
T Consensus 94 ----------~~~~~~~~~~~~~~~i~G-----------~~t---~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 94 ----------DPELIEAAVAQDIPIIPG-----------ALT---PTEIVTAWQAGASCVKV 131 (187)
T ss_pred ----------CHHHHHHHHHcCCCEEcC-----------cCC---HHHHHHHHHCCCCEEEE
Confidence 134556788888886542 122 44567888899999987
No 498
>PRK08223 hypothetical protein; Validated
Probab=27.14 E-value=3e+02 Score=28.18 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCH-HHHHHHHHHHHHHcCCCEEEE
Q 012928 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV-PLLQEDIIRRCRSMQKPVIVA 371 (453)
Q Consensus 296 ~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v-~~aqk~Ii~~c~~aGkpvi~a 371 (453)
..+++.+.+.|..+.|.+-=|.. .-+|++++++-.|.|+=+ -| .. ...+..+-.+|+++|+|++.+
T Consensus 84 e~a~~~l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~-~D--------~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 84 EVLAEMVRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDG-LD--------FFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEEC-CC--------CCcHHHHHHHHHHHHHcCCCEEEE
Confidence 34556777778887766533322 246899999888877522 11 21 246777888999999998876
No 499
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=27.09 E-value=2e+02 Score=27.17 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=51.3
Q ss_pred cCCcEEEeccccC--HHHHHHHHHHHHhcCCCceEEEEecChhhhccHHHHHhhcCEEEEeCCCccccCCCCCHHHHHHH
Q 012928 279 NQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQED 356 (453)
Q Consensus 279 ~gvd~I~lSfV~s--a~dv~~v~~~L~~~~~~i~IIakIET~~gv~NldeI~~~sDgImIgRGDLg~elg~e~v~~aqk~ 356 (453)
.+...+.+|.... .+.....++++.+.|-....+.-+++ ..-..+.+.+..+|+|+++-||=..-+..-+=....+.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~ 106 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDA 106 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHH
Confidence 4677777764432 34566777888887766555555544 22344555666799999998885332211000013345
Q ss_pred HHHHHHHcCCCEE
Q 012928 357 IIRRCRSMQKPVI 369 (453)
Q Consensus 357 Ii~~c~~aGkpvi 369 (453)
+.+.++ .|++++
T Consensus 107 i~~~~~-~G~v~~ 118 (210)
T cd03129 107 ILKRVA-RGVVIG 118 (210)
T ss_pred HHHHHH-cCCeEE
Confidence 555555 677754
No 500
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.06 E-value=6.2e+02 Score=24.95 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEechhhhhccCCCCchHHHHHHHHH-HHhCccEEEecC
Q 012928 351 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSG 407 (453)
Q Consensus 351 ~~aqk~Ii~~c~~a-Gkpvi~aTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ 407 (453)
+....+++++.+++ ++|+++= -.+..+..|..+++.+ ...|+|++.+++
T Consensus 147 ~~~~~eiv~~vr~~~~~pv~vK--------l~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 147 PEAVANLLKAVKAAVDIPLLVK--------LSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHHccCCCEEEE--------eCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 45556777777765 7888872 2334455566666554 456999999874
Done!