BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012929
(453 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Vitis vinifera]
Length = 622
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/389 (86%), Positives = 360/389 (92%), Gaps = 4/389 (1%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G GGAPPGFRLP+ +VG PK NKNKP L K+ IPGT+T
Sbjct: 1 MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K
Sbjct: 57 IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGET 356
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DE+F QTV+LI+EY+FPQVHISQFYPRPG
Sbjct: 357 DEEFAQTVSLIQEYRFPQVHISQFYPRPG 385
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
Length = 630
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/393 (86%), Positives = 360/393 (91%), Gaps = 5/393 (1%)
Query: 1 MEDIEDLL-AGSGGGGAPPGFRLPINAVGVNPK--YNKNKPRL-HDNHLSKTGSLSPKIP 56
MEDIEDLL GGGAPPGFRLP+N+VGV PK KNK L H LS++ LSPKIP
Sbjct: 1 MEDIEDLLIGSGSGGGAPPGFRLPLNSVGVYPKKIIKKNKGYLNHGISLSQS-LLSPKIP 59
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT+TIY+KTFGCSHNQSDSEYMAGQLS+FGYALTD E+ D+WLINTCTVKSPSQSAMDT
Sbjct: 60 GTQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDT 119
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL R
Sbjct: 120 IIAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTR 179
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
K LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV+ D
Sbjct: 180 KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTVVGD 239
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GVKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLKEIA
Sbjct: 240 GVKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLKEIA 299
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EVLRHPCVYSFLHVPVQSGSD VL+AMNREYT+S+FRTVVDTL ELVPGMQIATDIICGF
Sbjct: 300 EVLRHPCVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTVVDTLTELVPGMQIATDIICGF 359
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
PGETD+DF QTV+LI EYK PQVHISQFYPRPG
Sbjct: 360 PGETDDDFAQTVSLINEYKLPQVHISQFYPRPG 392
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 601
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/396 (83%), Positives = 357/396 (90%), Gaps = 9/396 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN----HLSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPG
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPG 394
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 602
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/396 (83%), Positives = 356/396 (89%), Gaps = 9/396 (2%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RVSSKQDQITASNRDSLAPPSL 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KIPGT+TIY+KTFGCSHNQSDSEYMAGQL+AFGYALT+ E+AD+WLINTCTVKSPSQSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSA 118
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFPGETDEDF+QTV LIK+YKF QVHISQFYPRPG
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPG 394
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/395 (84%), Positives = 355/395 (89%), Gaps = 7/395 (1%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLPI AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPITAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPG
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPG 394
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/395 (83%), Positives = 354/395 (89%), Gaps = 7/395 (1%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLP+ AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPLTAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINTCTVKSPSQSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSVI 239
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPG
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPG 394
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
Length = 612
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/389 (84%), Positives = 356/389 (91%), Gaps = 15/389 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G G +PPGFRLP+NAVGVN K NKNKP+LH LS+T +S KIPGT
Sbjct: 1 MEDIEDLLVGNGSG-SPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSET-PISSKIPGT-- 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
QSDSEYMAGQLS+FGY+L+D+ EEAD+WLINTCTVKSPSQSAMDTLI+K
Sbjct: 57 -----------QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISK 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 106 GKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 165
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TVI DGVKE
Sbjct: 166 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKE 225
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLKEIAEVLR
Sbjct: 226 IWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLR 285
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HPCVYSFLHVPVQSGSDA+L+AMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 286 HPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIICGFPGET 345
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D+DF+QTVNLIK YKF QVHISQFYPRPG
Sbjct: 346 DKDFSQTVNLIKAYKFAQVHISQFYPRPG 374
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
Length = 609
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/390 (81%), Positives = 348/390 (89%), Gaps = 12/390 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
MEDIEDLL GS PPGFRLP+ A VGV K N+ + IPGT+
Sbjct: 1 MEDIEDLLIGSA---TPPGFRLPLAAAVGVGTKRNQLSSSSLSPSPA--------IPGTQ 49
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGCSHNQSDSEYMAGQLSAFGY+L+D+ + AD+WLINTCTVKSPSQSAMDT+I+
Sbjct: 50 TIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIIS 109
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRLL RKKL
Sbjct: 110 KGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKL 169
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
PALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++VI++GVK
Sbjct: 170 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVK 229
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLKEIAE+L
Sbjct: 230 EIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEIL 289
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDIICGFPGE
Sbjct: 290 RHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGE 349
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDEDF QT+NLIKEYK PQVHISQFYPRPG
Sbjct: 350 TDEDFLQTINLIKEYKLPQVHISQFYPRPG 379
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Brachypodium distachyon]
Length = 624
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/391 (79%), Positives = 343/391 (87%), Gaps = 8/391 (2%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
MEDIED+L AG GGGAPPG RLP++ V V PK + RL +IPGT
Sbjct: 1 MEDIEDVLGPAGFSGGGAPPGLRLPLSTVAVKPK--RRSSRLAQTQQQPEA----RIPGT 54
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI
Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 115 SKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKT 174
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V+++GV
Sbjct: 175 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIVVSEGV 234
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL EIA V
Sbjct: 235 REIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLNEIASV 294
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
LRHPCVY+FLHVPVQSGSDAVL AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPG
Sbjct: 295 LRHPCVYTFLHVPVQSGSDAVLKAMNREYTVSEFRMVVDTLCELVPGMQIATDIICGFPG 354
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ETDEDF QTV LIKEYK PQVHISQFYPRPG
Sbjct: 355 ETDEDFAQTVKLIKEYKLPQVHISQFYPRPG 385
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
Length = 623
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/427 (74%), Positives = 357/427 (83%), Gaps = 28/427 (6%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L A GGGAPPG RLP+ AV V PK S+ P +
Sbjct: 1 MEDIEDVLGPADLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAR 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDI NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+++FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTLYELVPGMQIATDIIC 350
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD----------STELLSL- 403
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPG + S EL S+
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410
Query: 404 -LFSNYK 409
LFS Y+
Sbjct: 411 ELFSPYQ 417
>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 626
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/395 (77%), Positives = 344/395 (87%), Gaps = 16/395 (4%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIIC 350
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPG
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPG 385
>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
Length = 626
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 309/395 (78%), Positives = 342/395 (86%), Gaps = 15/395 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 113
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 114 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 173
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 174 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 233
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 234 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 293
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 294 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 353
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPG
Sbjct: 354 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPG 388
>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
Length = 629
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/398 (77%), Positives = 344/398 (86%), Gaps = 18/398 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV + PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVALKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQ---SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
IPGT+TIY+KTFGCSHNQ SDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQ
Sbjct: 54 IPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQ 113
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
SAM TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEV
Sbjct: 114 SAMTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEV 173
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
RLL RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+
Sbjct: 174 RLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVK 233
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
V+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEH
Sbjct: 234 IVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEH 293
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
LKEIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATD
Sbjct: 294 LKEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATD 353
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IICGFPGETDEDF+QTVNL+K+Y+FPQVHISQFYPRPG
Sbjct: 354 IICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPRPG 391
>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
Length = 621
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/374 (80%), Positives = 331/374 (88%), Gaps = 13/374 (3%)
Query: 20 FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----KIPGTETIYMKTFGCSHNQSDS 75
RLP+ AV V PK +PR S+ P +IPGT+TIY+KTFGCSHNQSDS
Sbjct: 19 LRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDS 69
Query: 76 EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVP 135
EYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM TLI+KCKSA KPLVVAGCVP
Sbjct: 70 EYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVP 129
Query: 136 QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 195
QGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL RK LP+LDLPKVR+NKF+EI
Sbjct: 130 QGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEI 189
Query: 196 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 255
LPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+++GV+E+WLSSEDTGAYGRDI
Sbjct: 190 LPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDI 249
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
G NLP LLN I AELP D STMLRIGMTNPPFILEHLKEIA VL HPCVYSFLHVPVQSG
Sbjct: 250 GTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSG 309
Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
SDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y
Sbjct: 310 SDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYL 369
Query: 376 FPQVHISQFYPRPG 389
FPQVHISQFYPRPG
Sbjct: 370 FPQVHISQFYPRPG 383
>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
Length = 613
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/395 (75%), Positives = 329/395 (83%), Gaps = 28/395 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 221 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 280
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 281 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 340
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPG
Sbjct: 341 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPG 375
>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/312 (90%), Positives = 302/312 (96%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAGQL+AFGY L+DN EEAD+WLINTCTVKSPSQSAMDTLI K +S+KKPLVVAGCVPQG
Sbjct: 1 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQG 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LPALDLPKVR+NKFVEILP
Sbjct: 61 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILP 120
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
INVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE+WLSSEDTGAYGRDIGV
Sbjct: 121 INVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGV 180
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLRHPCVYSFLHVPVQSGSD
Sbjct: 181 TLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSD 240
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
A+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGETDE+F QTV+LI+EY+FP
Sbjct: 241 AILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFP 300
Query: 378 QVHISQFYPRPG 389
QVHISQFYPRPG
Sbjct: 301 QVHISQFYPRPG 312
>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 489
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/402 (68%), Positives = 318/402 (79%), Gaps = 20/402 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLP-------------INAVGVNPKYNKNKPRLHDNHLSK 47
MEDIED++ GG AP G LP NAV + P+ R+ + K
Sbjct: 1 MEDIEDMIGDFGG--APLGLHLPKTDSTSGSGRRNGTNAVTIKPRR-----RISAHSGGK 53
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
S + +T+Y+KTFGCSHNQSDSEYMAGQLS +GY++TD + AD+WLINTCTVK
Sbjct: 54 ESIDSVVLVAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVK 113
Query: 108 SPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 167
+PSQSAM+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLK
Sbjct: 114 NPSQSAMENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLK 173
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
GHEVRLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV
Sbjct: 174 GHEVRLLRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLV 233
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
RV+ V+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V LP D S MLRIGMTNPP+
Sbjct: 234 DRVKGVVAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+ IA +L HPCVYSFLHVPVQSGSD VL AMNREYT+SDF+ V DTL+ LVP +
Sbjct: 294 ILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTLLRLVPDLH 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ATDIICGFPGET EDF T+ L+KEYKF Q+HISQFYPRPG
Sbjct: 354 LATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPG 395
>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
Length = 421
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 251/330 (76%), Positives = 301/330 (91%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD+VL+AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T ++F++T+ LI+ YKFPQVHISQFYPRPG
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPG 330
>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
Length = 421
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 251/330 (76%), Positives = 299/330 (90%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINTCTVK+PSQSAM+TLI
Sbjct: 1 TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RHPCVYSFLHVPVQSGSD+VL AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T ++F++T+ LI+ YKFPQVHISQFYPRPG
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPG 330
>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 517
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/276 (85%), Positives = 260/276 (94%)
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 240
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPG
Sbjct: 241 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPG 276
>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Glycine max]
Length = 518
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 240/280 (85%), Positives = 261/280 (93%)
Query: 110 SQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH 169
+QSAMDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGH
Sbjct: 13 AQSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGH 72
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
EVRLL RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV R
Sbjct: 73 EVRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRR 132
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V++VI++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+IL
Sbjct: 133 VKSVISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYIL 192
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
EHLK IAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIA
Sbjct: 193 EHLKXIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIA 252
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDIIC FPGETDEDF QTVNLI+EYKFPQVHISQFYPRPG
Sbjct: 253 TDIICRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPG 292
>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 318
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/326 (76%), Positives = 279/326 (85%), Gaps = 16/326 (4%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINTCTVK+PSQSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVL 320
IA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVL 316
>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 516
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/363 (63%), Positives = 281/363 (77%), Gaps = 11/363 (3%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PGT I++ TFGCSHN SDSE+MAGQL +GY L D E+AD WL+NTCTVK+PSQSAM+
Sbjct: 35 PGTAKIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMN 94
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
T+I + K+A K +V+AGCVPQG + KEL VS++GV QIDRVVE +E TL G VR+L
Sbjct: 95 TVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRMLE 154
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV +A
Sbjct: 155 KKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAMA 214
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +
Sbjct: 215 EGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAV 274
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
AE +RHP VY+++H+PVQSGS+AVL M REYT+ +F+ V DTL+ VPGM IATDIICG
Sbjct: 275 AEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTLLAAVPGMVIATDIICG 334
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG----------IQFLNLDSTELLSLLF 405
FPGETDE + +T++LI+EYKFP+VHISQFYPRPG Q + S EL + LF
Sbjct: 335 FPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKMKRVPTQIVKARSRELTA-LF 393
Query: 406 SNY 408
+Y
Sbjct: 394 ESY 396
>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
Length = 558
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/359 (63%), Positives = 283/359 (78%), Gaps = 11/359 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++ TFGCSHN SDSE+MAGQL ++GY L ++ +AD WL+NTCTVK+PSQSAM+T++ +
Sbjct: 35 IFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLER 94
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+A K L+VAGCVPQG + KEL+ VS++GV QIDRVVE +E TL G VR+L +K LP
Sbjct: 95 GKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRMLEKKTLP 154
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV I++GV E
Sbjct: 155 RLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAISEGVSE 214
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
VWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +AE +R
Sbjct: 215 VWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAVAEAMR 274
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HP VY+++H+PVQSGS+AVL AM REYT+ +FRTV DTL+E VPGM IATD+ICGFPGET
Sbjct: 275 HPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTLLEAVPGMVIATDVICGFPGET 334
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPG----------IQFLNLDSTELLSLLFSNYK 409
DE + +T+ LI+EYKFP+VHISQFYPRPG Q + S E L++LF +Y+
Sbjct: 335 DEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARMKRVPTQIVKGRSRE-LTVLFESYQ 392
>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/338 (65%), Positives = 275/338 (81%), Gaps = 3/338 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--ADIWLINTCTVKSPSQS 112
+PGT+ +++KTFGCSHN SDSEYMAGQLS +GY L +++E AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQA 62
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
M LIA K+ K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V
Sbjct: 63 GMSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVS 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY +L RVR
Sbjct: 123 MLAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQ 182
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEH
Sbjct: 183 AAADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEH 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+ + + LRHPCV+S+LHVPVQS SDAVL AM REYT+++FR V+DTL+ VPGM++ATD
Sbjct: 243 LEALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDTLLAGVPGMELATD 302
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II FPGE+ ED T+ L++ Y+FP HISQFYPRPG
Sbjct: 303 IITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPG 340
>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
C-169]
Length = 494
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/332 (67%), Positives = 271/332 (81%), Gaps = 3/332 (0%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLINTCTVKSPSQSAMDTLI 118
I++KTFGC+HN SDSEYM GQL +GY L D + AD+WL+NTCTVK+PSQ+AM TL+
Sbjct: 14 IWVKTFGCAHNMSDSEYMMGQLQDYGYRLLADDKQDAADLWLVNTCTVKNPSQAAMSTLV 73
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A+ K+ K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +L +KK
Sbjct: 74 ARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHMLAKKK 133
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG- 237
LP LDLPKVRRN VEILP++ GCLGACTYCKTKHARG LGSY + +LV R D
Sbjct: 134 LPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAAAVDPL 193
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V+EVWLSSEDTGAYGRD+ +LP LL A+ A LP DG T+LRIGMTNPPFILEHL +IAE
Sbjct: 194 VREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHLPDIAE 253
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
L HPCV+S+LHVPVQSGSDAVL+AMNREYT ++FR V DTL+ELVPG+++ATDIICGFP
Sbjct: 254 ALNHPCVFSYLHVPVQSGSDAVLAAMNREYTSAEFRRVADTLLELVPGLELATDIICGFP 313
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GETDEDF T+ L+++Y+FP HISQFYPRPG
Sbjct: 314 GETDEDFEATMALVRQYRFPHTHISQFYPRPG 345
>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 542
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/359 (60%), Positives = 283/359 (78%), Gaps = 5/359 (1%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG ++++TFGCSHN SDSE+MAGQLSA+GY LT + E+AD+W++NTCTVK+PSQSAM
Sbjct: 108 VPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSAM 167
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G VR+L
Sbjct: 168 NTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRML 227
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY E+LV RV+T I
Sbjct: 228 AKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTAI 287
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 288 AEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLDA 347
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+AE + HP VY+FLH+PVQ+GSDAVL M REY ++DF VVDTL+E VPG+ IATDIIC
Sbjct: 348 VAEAMHHPGVYAFLHIPVQAGSDAVLGRMKREYVVADFEKVVDTLLERVPGITIATDIIC 407
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG-----IQFLNLDSTELLSLLFSNY 408
GFPGET+ED+ T+ L ++Y F ++H+SQFYPRPG ++ +N + S +NY
Sbjct: 408 GFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAARMKKVNSREVKRRSRELTNY 466
>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
variabilis]
Length = 499
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/338 (66%), Positives = 267/338 (78%), Gaps = 3/338 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--NSEEADIWLINTCTVKSPSQS 112
+PGT+ I++KTFGCSHN SDSEYM GQL +G+ L D +S AD+WL+NTCTVKSPSQS
Sbjct: 63 VPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQS 122
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
AMDTL+ + + K L+VAGCVPQG R EL G+S++GV QIDRVVE VEETLKGH V+
Sbjct: 123 AMDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQ 182
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY LV R
Sbjct: 183 LLAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAA 242
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
AD V+E+WLSSEDTGAYGRDIG +LP LL +V LPPDG MLR+GMTNPPFILEH
Sbjct: 243 AAADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEH 302
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ +LR V+S+LHVPVQSGSDAVL+AM REY+ + FR V DTL+ VPG+++ATD
Sbjct: 303 LAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREYSAAQFRRVCDTLLAAVPGLELATD 362
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IICGFPGET+ED T+ L+ +Y+FP HISQFYPRPG
Sbjct: 363 IICGFPGETEEDHGATLALLDKYRFPHCHISQFYPRPG 400
>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
Length = 435
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/395 (56%), Positives = 293/395 (74%), Gaps = 9/395 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG +++KTFGCSHN SDSE+MAGQL A+GY L + ++AD+W++NTCTVK+PSQSAM
Sbjct: 3 VPGVAKVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAM 62
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T+I K K+ K LV+AGCVPQG + KELE +S++GV QIDR+V+VVE TL G VRLL
Sbjct: 63 NTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRLL 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T I
Sbjct: 123 EKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTAI 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 183 AEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLDA 242
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+AE + HP VY+FLH+PVQ+GSDAVL M REY +++F V DTL+ VPG+ IATDIIC
Sbjct: 243 VAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTLLAKVPGITIATDIIC 302
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QFLNLDSTEL------LSLLF 405
GFPGET ED+ +T+ L ++Y+F ++H+SQFYPRPG + +D+ E+ L+
Sbjct: 303 GFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARMKRVDTKEVKRRSRELTAYI 362
Query: 406 SNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQF 440
+Y+ L+ ++ + + L G TK +
Sbjct: 363 ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTKSY 397
>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
Length = 401
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 219/335 (65%), Positives = 275/335 (82%), Gaps = 2/335 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINTCTVKSPSQSA 113
+PGT+ +++KTFGCSHN SDSEYMAGQL +GY + AD+WLIN+CTVK PSQ+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAG 62
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
M +LIA ++ K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63 MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY +LV RVR
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182
Query: 234 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
AD V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+ ++ LRHPCV+S+LHVPVQSGSDAVL +M REYT+++FR VVDTL+ VPGM++ATDI
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTLLAGVPGMELATDI 302
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
I FPGE+ D +T+ L+++Y+FP HISQFYPR
Sbjct: 303 ITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337
>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 642
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/427 (51%), Positives = 302/427 (70%), Gaps = 15/427 (3%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 71 NAQKFQNNVQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 130
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 131 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 190
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 191 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 250
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 251 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 308
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 309 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 368
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QF 392
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPG ++
Sbjct: 369 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 428
Query: 393 LNLDSTEL------LSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVV 446
+ S ++ L+ LF +Y I + S DD++ + + L ++
Sbjct: 429 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTEQLVWIVSFDDRKKAMV----KGELPQLM 484
Query: 447 THDESYS 453
H +SY+
Sbjct: 485 GHTKSYT 491
>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/427 (51%), Positives = 302/427 (70%), Gaps = 15/427 (3%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QF 392
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPG ++
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 393 LNLDSTEL------LSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVV 446
+ S ++ L+ LF +Y I + S DD++ + + L ++
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTEQLVWIVSFDDRKKAMV----KGELPQLM 486
Query: 447 THDESYS 453
H +SY+
Sbjct: 487 GHTKSYT 493
>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Oreochromis niloticus]
Length = 516
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/424 (54%), Positives = 293/424 (69%), Gaps = 26/424 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED+++ S P + P+ K K L D L + SL IPGT+
Sbjct: 9 MEDIEDMVSSSD----PTPHERQSARKSIIPRSRKKKELLSDEEL-QADSL---IPGTQK 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++ I K
Sbjct: 61 IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK 120
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +KK
Sbjct: 121 AQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG 180
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R R
Sbjct: 181 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS 240
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILEHL+
Sbjct: 241 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPYILEHLE 298
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IATDII
Sbjct: 299 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDII 358
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGET+EDF T++L+K Y+FP + I+QFYPRPG ++ T+ LS +
Sbjct: 359 CGFPGETEEDFQATIDLVKAYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQV 418
Query: 405 FSNY 408
F +Y
Sbjct: 419 FHSY 422
>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/427 (51%), Positives = 302/427 (70%), Gaps = 15/427 (3%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + +++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKVFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD L+N+CTVK+PSQ L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QF 392
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPG ++
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 393 LNLDSTEL------LSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVV 446
+ S ++ L+ LF +Y I + S DD++ + + L ++
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTEQLVWIVSFDDRKKAMV----KGELPQLM 486
Query: 447 THDESYS 453
H +SY+
Sbjct: 487 GHTKSYT 493
>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
Length = 587
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/474 (47%), Positives = 315/474 (66%), Gaps = 28/474 (5%)
Query: 3 DIEDLLAGSG-GGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------- 54
D+EDL+ G+ RL N + PK + + L T S
Sbjct: 7 DLEDLIQGNELADEYTQNVRLKPNTIKKRPKKQLKQSEQKQDTLEHTADDSEIKFNQSTN 66
Query: 55 ------IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
IPG + +Y+KTFGCSHN SDSE+M GQL+ +GY L +N +EADI L+N+CTVK+
Sbjct: 67 TQQNTIIPGIQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLVENEKEADIILVNSCTVKN 126
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
PSQ A T++ K K +VVAGCVPQG R++ LE VS++G+ QIDRVVEV+EETLKG
Sbjct: 127 PSQDAFMTVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKG 186
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ VRLL +K LP+LDLPK+R+N +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++
Sbjct: 187 NTVRLLGKKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILA 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R V +GVKE+WL+SEDTGAYGRDIG ++ LL +V +LP D MLRIGMTNPP+I
Sbjct: 247 RCEQVCEEGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYI 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEH++ I+ +L HP V+SFLH+PVQ+G++ VL MNREYT +F V D L + VP + +
Sbjct: 305 LEHMENISLILNHPRVFSFLHIPVQAGNNTVLENMNREYTREEFEYVCDYLKKNVPNVTL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TE 399
ATDIICGFP ET+ F +T++L+K+Y+FP ++ISQFYPRPG + + ++
Sbjct: 365 ATDIICGFPSETNAQFEETISLVKKYEFPIINISQFYPRPGTAAMKMKKVPSIDVKSRSK 424
Query: 400 LLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLF---GMTKQFHLYLVVTHDE 450
++ +F ++ L+ + K+ ++++ F G TKQ+ L+ ++E
Sbjct: 425 KITEVFESFHRWDYLVGSIQKVWINDKEEKKGRQFQLVGHTKQYAKVLLPYNEE 478
>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
(Silurana) tropicalis]
gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 553
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/426 (53%), Positives = 300/426 (70%), Gaps = 29/426 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKNK + + T IPGT
Sbjct: 9 LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLS 402
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPG ++ T+ LS
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELS 417
Query: 403 LLFSNY 408
LF +Y
Sbjct: 418 QLFHSY 423
>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
adamanteus]
Length = 577
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/424 (53%), Positives = 296/424 (69%), Gaps = 23/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ P F N + PK K + + + + IPG +
Sbjct: 9 LEDIEDIVSAED----PKPFDRQFNRKNIIPKVRKRQSQ-KNVEVDDPPPRDSVIPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY++T+N+ EAD+WL+N+CTVKSP++ I K
Sbjct: 64 IWIRTWGCSHNSSDGEYMAGQLAAYGYSITENAAEADLWLLNSCTVKSPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ KK +V+AGCVPQ L G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY++E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRGKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L VPG+ +ATDII
Sbjct: 302 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKHVVDFLKTKVPGITVATDII 361
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSLL 404
CGFPGETDEDF +T+ L++EY+FP + I+QFYPRPG + T+ LS L
Sbjct: 362 CGFPGETDEDFQETMKLVEEYRFPSLFINQFYPRPGTPAAKMPQVPAQIKKQRTKELSKL 421
Query: 405 FSNY 408
F +Y
Sbjct: 422 FHSY 425
>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Gallus gallus]
Length = 582
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 295/424 (69%), Gaps = 23/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED++ S P +R V + ++ R + S+ IPG +
Sbjct: 9 LEDIEDIV--SAQDLKPRDWRFVRKNVFPKVRKRSSQQRAQTDDDPPHDSV---IPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++ I K
Sbjct: 64 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSIKK 123
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHLE 301
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDII
Sbjct: 302 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDII 361
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSLL 404
CGFPGETDEDF +T+ L+++YKFP + I+QFYPRPG + T+ LS L
Sbjct: 362 CGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQL 421
Query: 405 FSNY 408
F +Y
Sbjct: 422 FHSY 425
>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
laevis]
gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
Length = 556
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/426 (53%), Positives = 298/426 (69%), Gaps = 29/426 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKN + + T IPGT
Sbjct: 9 LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+CTVKSP++ I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 179 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLS 402
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPG ++ T+ LS
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKELS 417
Query: 403 LLFSNY 408
LF +Y
Sbjct: 418 QLFHSY 423
>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
Length = 649
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/401 (55%), Positives = 292/401 (72%), Gaps = 12/401 (2%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PG++ I+MKT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 56 PSVPGSQLIWMKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 115
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L+ K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 116 AFMHLVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 175
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 176 LLSKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 235
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI++GV E+WLSSEDTGAYG DIG +LP LL ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 236 VISEGVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHL 293
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IAEVL+H VYSFLHVPVQSGSD VL AMNREYT ++FR V D L+ VP + +ATDI
Sbjct: 294 DAIAEVLKHERVYSFLHVPVQSGSDDVLLAMNREYTAAEFRRVADELLAKVPDLTLATDI 353
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTV 412
ICGFP ET+E F++T++L+++Y+F ++ISQFYPRPG + + + K T
Sbjct: 354 ICGFPSETEEHFDETMDLVEKYRFHIMNISQFYPRPGTPAAKMKRVPTQVVKNRSRKLTK 413
Query: 413 MLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESYS 453
+ + H L G T++ + V+ D+ Y+
Sbjct: 414 LFETFEPYTH----------LVGTTQKVWVNTEVSDDKKYT 444
>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
davidii]
Length = 572
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 278/370 (75%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL HP VY+FLH+PVQS SDAVL AM REY ++DFR VVD L E VPG+
Sbjct: 297 ILEHLEEMAKVLNHPRVYAFLHIPVQSASDAVLMAMKREYCVADFRRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Taeniopygia guttata]
Length = 582
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 276/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 355
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFPGETDEDF +T+ L++ Y+FP + I+QFYPRPG + T
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRT 415
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 416 KDLSQLFHSY 425
>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/468 (48%), Positives = 309/468 (66%), Gaps = 34/468 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESY 452
F +Y Y D+R + + F V H++ Y
Sbjct: 424 FHSYS------------PYDHKIDERQQVLVTEESFDSKFYVAHNQFY 459
>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 4 [Pan troglodytes]
Length = 536
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 297/424 (70%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Macaca mulatta]
Length = 576
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 418 KDLSWVFHSY 427
>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
sapiens]
gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
[Homo sapiens]
gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 297/424 (70%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Nomascus leucogenys]
Length = 536
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 297/424 (70%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Pan paniscus]
gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 297/424 (70%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Otolemur garnettii]
Length = 583
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 418 KDLSRVFHSY 427
>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
Length = 576
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/342 (60%), Positives = 267/342 (78%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Saimiri boliviensis boliviensis]
Length = 578
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
fascicularis]
Length = 576
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 418 KDLSRVFHSY 427
>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Felis catus]
Length = 576
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/342 (60%), Positives = 267/342 (78%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Oryctolagus cuniculus]
Length = 571
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 279/370 (75%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL AM REY ++DF++VVD L E VPG+
Sbjct: 297 ILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYCVADFKSVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSQVFHSY 426
>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Takifugu rubripes]
Length = 613
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 272/370 (73%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+CTVK+P++
Sbjct: 53 IPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPIEADLWLLNSCTVKNPAEDHF 112
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 113 RNSIKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 172
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 173 GQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 232
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 233 ERTRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 290
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+
Sbjct: 291 ILEHLEEMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCVGDFKRVVDFLKERVPGVT 350
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGET+EDF +T++L+K Y+FP + I+QFYPRPG ++ T
Sbjct: 351 IATDIICGFPGETEEDFQETLDLVKLYQFPSLFINQFYPRPGTPAAKMEQIPAHIKKQRT 410
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 411 KELSQLFHSY 420
>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 1 [Ovis aries]
gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 2 [Ovis aries]
gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 3 [Ovis aries]
Length = 578
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 277/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SDAVL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDAVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KELSRIFHSY 426
>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Canis lupus familiaris]
gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
familiaris]
Length = 578
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 206/342 (60%), Positives = 265/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ATDIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPG
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPG 398
>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/424 (52%), Positives = 297/424 (70%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
putorius furo]
Length = 411
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/396 (55%), Positives = 287/396 (72%), Gaps = 14/396 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ G P R V PK K + + + S S IPG +
Sbjct: 10 LEDIEDIVSQ---GDLKPQDRHSARK-HVVPKARKRNTQKYLQEENSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWLRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +ATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFPGETD+DF +TV L++EY+FP + I+QFYPRPG
Sbjct: 363 CGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPG 398
>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Equus caballus]
Length = 578
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 276/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 624
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/407 (55%), Positives = 292/407 (71%), Gaps = 12/407 (2%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P +PGT+ I++KT+GCSHN SDSEYM G L+++GY T + + A +WL+N+CTVK PSQ+
Sbjct: 55 PSVPGTQLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 114
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
A L K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 115 AFMHLAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 174
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 175 LLAKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 234
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
VI +GV E+WLSSEDTGAYG DIG +LP L+ ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 235 VINEGVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHL 292
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IAEVL H VYSFLHVPVQSGSD VL AMNREYT +FR V D L+ VP + +ATDI
Sbjct: 293 DAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELLAKVPDLTLATDI 352
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD--STEL-------LSL 403
ICGFP ET+E F++T+ L+ +Y+F ++ISQFYPRPG + ST++ L+
Sbjct: 353 ICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKMKRVSTQIVKNRSRKLTK 412
Query: 404 LFSNYKFTVMLISILVKLHYFS-LDDQRNVLFGMTKQFHLYLVVTHD 449
LF ++ L+ +K+ + + D + TK + L+ D
Sbjct: 413 LFETFEPYTRLVDTTLKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDD 459
>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
Length = 529
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/426 (52%), Positives = 299/426 (70%), Gaps = 19/426 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN-HLSKTGSLSPKIPGTE 59
+EDIEDL++ ++ N V + + +K + + N + + IPGT+
Sbjct: 10 VEDIEDLISKEESYSVDVRSKISRNNVKLRSRPSKRQGKSDSNVEVDEKAVGDSIIPGTQ 69
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++T+GCSHN+SD EYMAGQLS++GY +T+ EEAD+WL+N+C VK+P++ + I
Sbjct: 70 GIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVKNPAEDSFYNDIR 129
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K KK LV+AGCVPQG + ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K+
Sbjct: 130 KAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQKRK 189
Query: 180 PA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+LPK+R+N VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R +T
Sbjct: 190 NGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERAKT 249
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+W++SEDTGAYG DIGV+LP LL +V ++ PDG+ MLRIGMTNPP+ILEHL
Sbjct: 250 AFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLV-KVIPDGA-MLRIGMTNPPYILEHL 307
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L HP VYSFLHVPVQ+GSD VL M REYT++DF VV+ L + VPG+ IATDI
Sbjct: 308 EEMAKILSHPRVYSFLHVPVQAGSDKVLYDMRREYTVTDFEKVVNYLSDKVPGITIATDI 367
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSL 403
ICGFP E +DF +T+ LI+ +KFP V I+QFYPRPG + + + L+
Sbjct: 368 ICGFPTEEKDDFAKTLRLIERHKFPSVFINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQ 427
Query: 404 LFSNYK 409
LF +Y+
Sbjct: 428 LFKSYR 433
>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 266/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+ +GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLATYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 399
>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
taurus]
Length = 578
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 276/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KELSRIFHSY 426
>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
Length = 614
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/399 (54%), Positives = 290/399 (72%), Gaps = 3/399 (0%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ I++KTFGC+HN SDSE+M+GQL A+GY LTD+ EA++W++NTCTVK+PSQ+AM
Sbjct: 79 VPGTQRIHVKTFGCAHNHSDSEFMSGQLQAYGYKLTDDPSEANLWVVNTCTVKNPSQAAM 138
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+T++A+ K+ + P+VV GCVPQG + KEL VS++GV QIDR+VE VE TL+G V +L
Sbjct: 139 NTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLML 198
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR + I
Sbjct: 199 EKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLAI 258
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GV E+WLSSEDTGAYG DIG N+ L A+V LP D S MLR+GMTNPP+IL HL
Sbjct: 259 EEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLPA 318
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
IAE +RHP V+S++H+PVQSGS VL M REYT +F V D L+E VP + IATDIIC
Sbjct: 319 IAEAMRHPSVFSWIHIPVQSGSSKVLDDMKREYTREEFEQVCDYLLEHVPDITIATDIIC 378
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVML 414
GFPGET+ ++ +T++LI++YKFP+VHISQFY RP + L++ + + T +
Sbjct: 379 GFPGETESEWRETMSLIEKYKFPEVHISQFYARPNTPAFRMKRVNTLTVKNRSRELTKLT 438
Query: 415 ISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESYS 453
S + L+ Q+ ++ +V H +SYS
Sbjct: 439 ESYFP---WTKLEGQKMKVWITDIAADGVSLVGHTKSYS 474
>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
scrofa]
Length = 578
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/424 (52%), Positives = 294/424 (69%), Gaps = 23/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ S P V + + L D + + S IPG +
Sbjct: 10 LDDIEDIV--SQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDST---IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 422
Query: 405 FSNY 408
F +Y
Sbjct: 423 FHSY 426
>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
[Mus musculus]
Length = 520
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 267/342 (78%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
Length = 562
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 267/370 (72%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A GY +T++ EAD+WL+N+CTVK+P++
Sbjct: 55 IPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHF 114
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 115 RNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 174
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV
Sbjct: 175 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELV 234
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +GV E+WL+SEDTGAYG+DIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 235 ERARQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 292
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++L HP VY+FLHVPVQS SD+VL M REY DFR V D L + VPG+
Sbjct: 293 ILEHLEEMSKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGIT 352
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD DF +T +L+KEY+FP + I+QFYPRPG +D T
Sbjct: 353 IATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRT 412
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 413 KELSALFHSY 422
>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase [Callithrix jacchus]
Length = 579
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/424 (52%), Positives = 296/424 (69%), Gaps = 22/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LEDIEDIVSQED---SKPQERHFVRR-DVVPKARRRNTQKYLQEEEDSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
+ K +V+A CVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T+ LS +
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDLSRV 423
Query: 405 FSNY 408
F +Y
Sbjct: 424 FHSY 427
>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
musculus]
gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Mus musculus]
Length = 578
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 267/342 (78%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Sarcophilus harrisii]
Length = 577
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 274/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKQVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPG + T
Sbjct: 357 IATDIICGFPGETDQDFQDTMKLVEDYKFPSLFINQFYPRPGTPAAKMQQVPAHVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 417 KDLSQLFHSY 426
>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
alecto]
Length = 621
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/342 (60%), Positives = 265/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+AFGY +T+N+ EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAFGYKITENASEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ V D L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVADFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
[Equus caballus]
Length = 578
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 276/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 520
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 266/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 578
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 266/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
[Mus musculus]
Length = 444
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 267/342 (78%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Monodelphis domestica]
Length = 579
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 274/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGLT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPG + T
Sbjct: 357 IATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPGTPAAKIQQVPAHVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 417 KDLSQLFHSY 426
>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 442
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 266/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Cricetulus griseus]
Length = 432
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/342 (59%), Positives = 264/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +VA +P MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIPE--GAMLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +T+ L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPG 398
>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Loxodonta africana]
Length = 578
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 275/370 (74%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+ + +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEKASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 357 VATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQIPAQVKKQRT 416
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 417 KDLSRVFHSY 426
>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
Length = 416
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/342 (60%), Positives = 266/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
norvegicus]
Length = 578
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/342 (60%), Positives = 265/342 (77%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+G QQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 398
>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
Length = 536
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/342 (60%), Positives = 263/342 (76%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GCSHN SDSEYMAGQL+++GY +TD+SE AD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKVWLKTWGCSHNNSDSEYMAGQLASYGYKITDDSESADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + +K +VVAGCVPQG L+G+S++GVQQIDRV EVVEETLKGH VRL
Sbjct: 124 RNEIKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLY 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 184 GQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+GMTNPP+
Sbjct: 244 ARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L E VPG+
Sbjct: 302 ILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLKERVPGVT 361
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPG
Sbjct: 362 IATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPG 403
>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
Length = 542
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 232/468 (49%), Positives = 307/468 (65%), Gaps = 25/468 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + + + LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITVRPKRRKQE----QEEVPQPPILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYMAGQL+ +GY L+D+ +AD+WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQFRNEIEH 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +V+AGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+KK
Sbjct: 123 GKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQKKNS 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF V+ L E VPG+ IATDII
Sbjct: 301 EMAKILRHPKVYSFLHIPVQSGSDQVLADMRREYTRADFEHTVNFLSERVPGLTIATDII 360
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSLL 404
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPG + T+ LS
Sbjct: 361 CGFPTETEVDFEETMALCQKYKFPSLFINQFFSRPGTPAARMPKVPTQEVKTRTKRLSEF 420
Query: 405 FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESY 452
F +Y+ + +L K+ + + G K F+ +++ +E Y
Sbjct: 421 FQSYEPYQHKVGLLQKVLITEMSHDKQHYVGHNK-FYEQVLIPMEERY 467
>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
Length = 540
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/424 (52%), Positives = 291/424 (68%), Gaps = 25/424 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+ S P + V K N+ + L + + +PGT+T
Sbjct: 9 IEDIEDLI--SSQDITPKERYSSRKNITVRSKRNQLR-----EELPQPPVFNSIVPGTQT 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAGQL+A+GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 62 IYVKTWGCTHNSSDSEYMAGQLAAYGYRLTEDKSKADLWLLNSCTVKSPAEDHFRNEIEA 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 122 GRKQGKHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEA 181
Query: 181 -------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ PDG M+R+GMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+ IATDII
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFEMVVNFLRERVPGLTIATDII 359
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLL 404
CGFP ET++DF +T+ L ++YKFP + I+QF+PRPG + T+ LS
Sbjct: 360 CGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMQKVPTQDVKKRTKRLSEF 419
Query: 405 FSNY 408
F +Y
Sbjct: 420 FQSY 423
>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Amphimedon queenslandica]
Length = 550
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/412 (53%), Positives = 285/412 (69%), Gaps = 18/412 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG+++IY+KT+GCSHN SD EYMAG L+A GY +TD+ +A +WL+N+CTVK PS+
Sbjct: 63 IPGSQSIYIKTWGCSHNTSDGEYMAGLLAAEGYTITDSPLDAHVWLLNSCTVKGPSEDGF 122
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ I K K K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE LKG VRL
Sbjct: 123 KSAIKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLF 182
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
K+ P+L+LPK+R+N VEI+PIN GCL CTYCKTKH+RG+L SY + ++
Sbjct: 183 GTKRGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEII 242
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTGAYGRDIGV LP LL +V E+ P+GS MLRIGMTNPP+
Sbjct: 243 SRATQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPY 300
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
I+EHL+E+A++L HP VYSFLHVPVQSGSDAVL M REYT+ FR VVD L E VPG+
Sbjct: 301 IMEHLEEMAKILSHPRVYSFLHVPVQSGSDAVLGEMKREYTIKQFRKVVDYLKEQVPGVT 360
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATD+ICGFP ET+EDF++T++L+ EYKFP + I+QFYPRPG + + +
Sbjct: 361 IATDVICGFPTETEEDFSETLSLVNEYKFPSLFINQFYPRPGTPAAKMKRIPTNEVKNRS 420
Query: 399 ELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDE 450
L+ LF +Y + + + + + G TK + LV + E
Sbjct: 421 RKLTELFHSYTPYSKRVGGIETILVTEMSHDKRYYVGHTKYYEQVLVPQYKE 472
>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
Length = 547
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/389 (54%), Positives = 272/389 (69%), Gaps = 18/389 (4%)
Query: 37 KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
+ R H + IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S +A
Sbjct: 37 RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 156
D+WL+N+CTVKSP++ I K + K +V+AGCVPQ + ++ +SI+GVQQID
Sbjct: 97 DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156
Query: 157 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 209
RVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 269
KTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
+P MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL M REY
Sbjct: 277 IPE--GAMLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCC 334
Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+DF +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPG
Sbjct: 335 ADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPG 394
Query: 390 I---------QFLNLDSTELLSLLFSNYK 409
+ T+ LS LF +Y+
Sbjct: 395 TPAALMQQLPAHVKKQRTKELSALFHSYR 423
>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
Length = 555
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 268/370 (72%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY++T+GCSHN SDSEYMAGQL+A+GY +TD+ + AD+WL+N+CTVKSP++
Sbjct: 58 IPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K+ K LVVAGCVPQG ++G+S+VGVQQIDRVVEVVEETLKGH VRL
Sbjct: 118 RNAIKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLF 177
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +LDLPK+R+N VEI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 178 GQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIV 237
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV LP LL +V +P G +RIGMTNPP+
Sbjct: 238 NRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPY 295
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VYSFLHVPVQS S VL+ M REY DF VV+ L + VP +
Sbjct: 296 ILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKREYIAEDFEHVVNYLRQRVPDLT 355
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATD+ICGFP ET++DF +T++L+K+YKFP + I+QFYPRPG + T
Sbjct: 356 IATDLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFYPRPGTPAARMKRLPTEEVKRRT 415
Query: 399 ELLSLLFSNY 408
+S LF +Y
Sbjct: 416 REVSKLFQSY 425
>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
Length = 538
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/467 (49%), Positives = 306/467 (65%), Gaps = 28/467 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
+EDIEDL+A P R + V PK K + +S+ LS IPGT+
Sbjct: 9 IEDIEDLIASQD---ITPKERYSSRKHITVRPKRRKQE------QVSQPSVLSSVIPGTQ 59
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
TIY+KT+GC+HN SD+EYMAGQL+ +GY LT++ +AD+WL+N+CTVK+P++ I
Sbjct: 60 TIYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEIE 119
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 120 HGKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQKKD 179
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 180 SGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQ 239
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG NLP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 240 AFEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILEHL 297
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+A++L+HP VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDI
Sbjct: 298 DEMAKILQHPRVYSFLHIPVQSGSDQVLADMKREYTRAEFEHVVNFLSERVPGLTIATDI 357
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSL 403
ICGFP ET+ DF +T+ L ++YKFP + I+Q++PRPG + T+ LS
Sbjct: 358 ICGFPTETEMDFEETMTLCQKYKFPSLFINQYFPRPGTPAARMLKVPAQKVKARTKRLSE 417
Query: 404 LFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDE 450
F +Y+ + + K+ + + G K + L+ E
Sbjct: 418 FFQSYELYGHKVGLQQKVLVTEVSHDKQHYVGHNKFYEQVLIPMKQE 464
>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
Length = 537
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/370 (58%), Positives = 271/370 (73%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL ++ E+ P+G M RIGMTNPP+
Sbjct: 236 DRAKQAFEEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+
Sbjct: 294 ILEHLEEMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFERVVNFLRERVPGLT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET++DF +T+ L ++YKFP + I+QF+PRPG + T
Sbjct: 354 IATDIICGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMPKVPTQDVKKRT 413
Query: 399 ELLSLLFSNY 408
+ LS F +Y
Sbjct: 414 KRLSEFFQSY 423
>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
Length = 560
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/433 (52%), Positives = 295/433 (68%), Gaps = 32/433 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------ 54
++DIED++ G G A NAVG K N + +KT + PK
Sbjct: 7 LDDIEDIV-GEGDLTALERSVARSNAVGKRVKKTPN-----NKDPAKTNKVIPKVEENGS 60
Query: 55 -IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ I++KT+GC+HN SDSEYMAGQL+A+GY+LTD EAD+WL+N+CTVK+P++
Sbjct: 61 IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I ++ P+VVAGCVPQG L+G+SI+GVQQIDRVVEVVEETLKGH VRL
Sbjct: 121 FKNEIDDGRARGTPVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRL 180
Query: 174 LHRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
L KK +L LPK+R+N +EI+PIN GCL CTYCKTKHARG LGSY E
Sbjct: 181 LGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEE 240
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V R +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG MLR+GMTNP
Sbjct: 241 IVARAIQSFQEGVCEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNP 298
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
P+ILEHL+ IAE+L HP VY+FLH+PVQSGSD VL+ M REY ++DF VV+ L E VPG
Sbjct: 299 PYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLTDMKREYCVADFERVVNFLRERVPG 358
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD--------- 396
+ IATDIICGFP ET++DF+ T+ L +++FP + I+QF+PR G ++
Sbjct: 359 ISIATDIICGFPTETEQDFDLTMELCSKHRFPSLFINQFFPRVGTPAYRMERVPTKQVKN 418
Query: 397 STELLSLLFSNYK 409
T+ LS LF +Y+
Sbjct: 419 RTKRLSELFKSYQ 431
>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
1-like 1 [Ciona intestinalis]
Length = 516
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/377 (56%), Positives = 275/377 (72%), Gaps = 19/377 (5%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKS 108
++ IP T+TI++KT+GC+HN SDSEYMAGQL+++GY +T+N + AD+WL+N+CTVK+
Sbjct: 55 TIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKN 114
Query: 109 PSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 168
P++ +I+K +S K +V+AGCV QG+ ++G+SI+GVQQIDRVVEVVEETLKG
Sbjct: 115 PAEDHFRNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKG 174
Query: 169 HEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ VRLL +KK +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY
Sbjct: 175 NTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSY 234
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
V +V R +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+G
Sbjct: 235 PVAEIVQRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVG 292
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
MTNPP+IL+HL+E+ ++L HP VYSFLHVPVQSGSD L M REYT SDF VVDTL
Sbjct: 293 MTNPPYILDHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRA 352
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL------ 395
VPG+ IATDIICGFP ETDEDF T+ L ++YKFP + I+QF+PRPG +
Sbjct: 353 SVPGISIATDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQ 412
Query: 396 ---DSTELLSLLFSNYK 409
T+ LS LF +Y+
Sbjct: 413 EIKKRTKRLSELFRSYE 429
>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila]
gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila SB210]
Length = 574
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/461 (47%), Positives = 304/461 (65%), Gaps = 36/461 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGV----------NPKYNKNKPRLHDNHLSKTGS 50
+ DIED++AG R+ + PK + + D+ +
Sbjct: 6 LADIEDVIAGDVADDFIQKDRVKDRNIKKRPKKVKKVEEEPKQEELQEPEDDDEIKFDMP 65
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ ++PGT+ +Y+KTFGCSHN SDSE+M GQL+ +GY L + ++A + L+N+CTVK+PS
Sbjct: 66 VNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPS 125
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q A T++ K KKP+VVAGCVPQG R++ LE VS++G+ QIDRVVEVVEETLKG++
Sbjct: 126 QDAFMTIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNK 185
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
VRL +K LP+LDLPK+R CLG+CTYCKTKHARG LGSY E++V RV
Sbjct: 186 VRLYGKKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRV 232
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+TV +GVKE+WL+SEDTGAYGRDIG ++ LL IV LP D MLR+GMTNPP+ILE
Sbjct: 233 KTVCEEGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILE 290
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL+ ++ +LRHP V+SFLH+PVQ+ ++ VL MNREYT +F V D L++ VP M IAT
Sbjct: 291 HLQNMSTILRHPRVFSFLHIPVQAANNTVLENMNREYTCEEFEQVCDYLLKNVPNMTIAT 350
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELL 401
DIICGFPGET+ F+ T+ L+ +YKFP ++ISQFYPRPG + + ++ +
Sbjct: 351 DIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGTAAMKMKKVPSQDVKMRSKKI 410
Query: 402 SLLFSNYKFTVMLISILVKLHYFSLDDQRNV--LFGMTKQF 440
+ LF +K L+ ++ +D++ V L G TKQ+
Sbjct: 411 TELFDTFKRWDHLLGTTQRIWINDKEDKKGVLQLVGHTKQY 451
>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
Length = 558
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/355 (59%), Positives = 261/355 (73%), Gaps = 9/355 (2%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
D + + L IPGT++IY+KT+GC+HN SDSEYMAGQL+++GY +T + +AD+WL+
Sbjct: 49 DAAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLL 108
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 161
N+CTVK+PS+ I K +V+AGCVPQ + + G+SIVGV QIDRV EV
Sbjct: 109 NSCTVKNPSEDTFRNEIQAANKMGKHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEV 168
Query: 162 VEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
VEETLKGH VRLL KKL P L LPKVR+N +EI+PIN GCL ACTYCKTK A
Sbjct: 169 VEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFA 228
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
R L SY VE +V R V +GV E+WL+SEDTG YGRDIG +LP LL +VA +P DG
Sbjct: 229 RADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTYGRDIGTSLPELLWQLVAVIP-DG 287
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
MLR+GMTNPP+ILEHL+E+A++L HP VYSFLHVP+QSGSD+VLS M REY SDF
Sbjct: 288 C-MLRLGMTNPPYILEHLEEMAKILVHPKVYSFLHVPIQSGSDSVLSDMKREYCRSDFEQ 346
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+VD L + VPG+ IATDIICGFP ET+EDF T+ L ++YKFP + I+QFYPRPG
Sbjct: 347 IVDFLNDKVPGITIATDIICGFPTETEEDFEHTMTLCEKYKFPSLFINQFYPRPG 401
>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
[Columba livia]
Length = 515
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 267/370 (72%), Gaps = 20/370 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+CTVK+P++
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + KK +V+AGCVPQ L+G+SI+GV ++EVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 176 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 236 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEAIPE--GAMLRLGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 294 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFPGETDEDF +T+ L+++Y+FP + I+QFYPRPG L T
Sbjct: 354 IATDIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYPRPGTPAAKLHQVPAAVKKQRT 413
Query: 399 ELLSLLFSNY 408
+ LS LF +Y
Sbjct: 414 KDLSQLFHSY 423
>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
Length = 539
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/425 (52%), Positives = 289/425 (68%), Gaps = 24/425 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + + PK K +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITIRPKRRKQ----LQEEVSQPSILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SD+EYM GQL+++GY LT++ +AD+WL+N+CTVKSP++ I
Sbjct: 63 IYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAEDQFRNEIEY 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 123 GKKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDL 182
Query: 180 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+L+LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 242
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GV E+WL+SEDTGAYGRDIG NLP LL ++ ++ PDG M+RIGMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLD 300
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ ++LRH VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDII
Sbjct: 301 EMTKILRHSKVYSFLHIPVQSGSDHVLADMKREYTCAEFEHVVNFLSERVPGLTIATDII 360
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSLL 404
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPG + T+ LS
Sbjct: 361 CGFPTETEMDFEETMTLCQKYKFPSLFINQFFSRPGTPAARMPKVPAQKVKTRTKRLSEF 420
Query: 405 FSNYK 409
F +Y+
Sbjct: 421 FQSYE 425
>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
Length = 561
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/426 (50%), Positives = 292/426 (68%), Gaps = 22/426 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK-NKPRLHDNHLSKTGSLSPKIPGTE 59
++DIED+ + + G R + A + +K N P S+ IPGT+
Sbjct: 12 IDDIEDIFSKTSEGIPREKVRKHVVARARKQRASKRNAPEASQVQHPLADSV---IPGTQ 68
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY+KT+GC+HN SD EYMAGQL+A+GY +T++ + A +WL+N+CTVK+P++ I
Sbjct: 69 NIYVKTWGCAHNSSDGEYMAGQLAAYGYTITEDKDSAHLWLLNSCTVKNPAEDHFRNEIT 128
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K K +V++GCVPQG+ ++G+S++GV QIDRVVEVVEETLKG+ VRL +KK
Sbjct: 129 KAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQKKE 188
Query: 180 P-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
AL LPK+RRN +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R +
Sbjct: 189 AGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRAKQ 248
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SED GAYG DIGV LP LL +V E PDG+ M+R+GMTNPP+ILEHL
Sbjct: 249 SFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILEHL 306
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L+HP VYSFLHVPVQSGSDAVL M REY +DF VVD L E VP + +ATDI
Sbjct: 307 EEMAKILKHPRVYSFLHVPVQSGSDAVLGDMKREYCRADFMHVVDFLKERVPNITVATDI 366
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------STELLSL 403
ICGFP ET+EDF++T+ L+++Y FP + I+QF+PRPG ++ ++ L+
Sbjct: 367 ICGFPTETEEDFDETMTLVEKYHFPSLFINQFFPRPGTPAAKMERIPPPQVKKRSKQLTE 426
Query: 404 LFSNYK 409
LF +Y+
Sbjct: 427 LFHSYQ 432
>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
Length = 563
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/396 (54%), Positives = 279/396 (70%), Gaps = 12/396 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINTCTVKSPSQSA 113
IPG + I++KT GC+HN SD EYMAG L+++GY +T+ SE+ D +L N+CTVK PSQ +
Sbjct: 2 IPGMQRIFLKTQGCAHNVSDGEYMAGLLASYGYEITETWSEDVDCFLFNSCTVKGPSQDS 61
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
++AK KS+ +VVAGCVPQG E + VSI+G QQI RVVEVVEE +KG+ V+L
Sbjct: 62 FLNMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKL 121
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +++ PAL+LPK+RRN VEI+PI++GCL CTYCKTKHARG L SYT +S+V RVRTV
Sbjct: 122 LGQRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTV 181
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GV+EVWLSSEDTGAYG+DI V+LP LL AIV L PDG MLR+GMTNPP ILEH +
Sbjct: 182 ISEGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDAL-PDG-VMLRVGMTNPPHILEHKE 239
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+A VL HP V+ FLH+PVQ GSD VL M REYT DF +VD L+E VP + IATDII
Sbjct: 240 AVARVLNHPRVFKFLHIPVQCGSDKVLQDMKREYTRKDFEVLVDYLLEHVPDITIATDII 299
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSLL 404
CGFP E++EDF T++L+ +YKFP V+I+QFYPRPG + D + ++
Sbjct: 300 CGFPTESEEDFQHTMDLLDKYKFPIVNIAQFYPRPGTVAAKMPKLQSGVVKDRSRRVTAH 359
Query: 405 FSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQF 440
F +Y+ L+ ++ N + G T +
Sbjct: 360 FESYRTWDHLVGRKERVWVIEYGKDENYVVGHTAGY 395
>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
Length = 548
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 259/342 (75%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 67 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 187 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 247 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 305 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPG
Sbjct: 365 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPG 406
>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
Length = 545
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/342 (60%), Positives = 259/342 (75%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+CTVK+P++
Sbjct: 64 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 123
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 124 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 183
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 184 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 243
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 244 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGC-RLRLGMTNPPY 301
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 302 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 361
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPG
Sbjct: 362 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPG 403
>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Saccoglossus kowalevskii]
Length = 544
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 271/371 (73%), Gaps = 18/371 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG +++Y+KT+GCSHN SDSEYMAGQL+++GY +T+ E AD+WL+N+CTVK+P++
Sbjct: 46 IPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQHF 105
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L + GVS+VGVQQIDR+VEVVEET KGH VRL
Sbjct: 106 QNSIIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLF 165
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK L+LPK+R+N +EI+ IN GCL ACTYCKTK+ARG LGSY LV
Sbjct: 166 GQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELV 225
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYG+DIGV + LL +V E+ PDG M+RIGMTNPP+
Sbjct: 226 ARAKQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPY 283
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+EI+++L+HP VYSFLHVPVQSGSD+VL M REY + DF+ V + L + VPG+
Sbjct: 284 ILEHLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKREYCVDDFKHVCNFLKKRVPGVT 343
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ETDEDF++T+ L++EYKFP + I+Q++PRPG + T
Sbjct: 344 IATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPGTPSAKMTRVPTREVKKRT 403
Query: 399 ELLSLLFSNYK 409
+ LS LF +Y+
Sbjct: 404 KKLSQLFQDYR 414
>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
Length = 542
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/400 (54%), Positives = 279/400 (69%), Gaps = 29/400 (7%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
LS IPGT+T+Y+KT+GC+HN SD+EYMAGQL+A GY L D+ +AD+WL+N+CTVK+P+
Sbjct: 46 LSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPA 105
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
+ I + A K +VVAGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKGH
Sbjct: 106 EDQFRNEIENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHT 165
Query: 171 VRLLHRKKLPA--------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
VR L KK L+LPK+R+N +EI+ I+ GCL CTYCKTKHARG LGSY
Sbjct: 166 VRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYP 225
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V R +GV E+W++SEDTGAYGRDIG NLP LL +V +P S M+RIGM
Sbjct: 226 PDEIVARALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIP--ESCMMRIGM 283
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
TNPP+ILEHL EIA++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E
Sbjct: 284 TNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLADMKREYTRADFEHVVNYLRER 343
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD------ 396
VP + IATDIICGFP ET+E+F +T+ L ++YKFP + I+QF+PRPG +
Sbjct: 344 VPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQFFPRPGTPAARMPRIPTQQ 403
Query: 397 ---STELLSLLFSNY--------KFTVMLISILV--KLHY 423
T+ L+ LF +Y K +L++ + KLHY
Sbjct: 404 VKARTKKLTELFYSYEPYENQVGKLCCVLVTEVAHDKLHY 443
>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
Length = 442
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/396 (54%), Positives = 280/396 (70%), Gaps = 20/396 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ P ++ + V K +P ++DN IP +
Sbjct: 8 VDDIEDLIVSRDSAPKPNRTKITYRSKKVK-KDEYVQPVIYDN----------PIPESHK 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYMAG LS++GY L ++ E AD+WL+N+CTVK+P++S I K
Sbjct: 57 IYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIEK 116
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K +V AGCVPQG+ ++ +SI+G+ IDRVVEVVEETLKGH VRLL +KK
Sbjct: 117 GRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQKKEN 176
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPKVR+N ++EI+PI+ GCL CTYCKTKHARG LGSY VE +V R +
Sbjct: 177 GKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERAKQA 236
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++GV E+WL+SEDTGAYG+DIG +LP LL +V E+ PD M R+GMTNPP+ILEHL+
Sbjct: 237 FSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILEHLE 294
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+A++L H VYSFLHVPVQSGSDAVLS M REYT+SDF+ VVD L VPG+ IATDII
Sbjct: 295 EMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDFLRLRVPGITIATDII 354
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFP ET++DF +T++L + YKFP + I+QFYPRPG
Sbjct: 355 CGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPG 390
>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
Length = 570
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/413 (53%), Positives = 277/413 (67%), Gaps = 29/413 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+++GY L +EAD+WL+N+CTVK+PS+
Sbjct: 71 IPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLNSCTVKNPSEDTF 130
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG + L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 131 RNEIESGMQNGKHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 190
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ +L LPKVR+N VEI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 191 QNKKVNGRRVAGASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 250
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 251 ERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 309 ILEHLEEVAKVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRARVPGLT 368
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFP ET+ DF +T+ L ++Y+FP + I+QF+PRPG ++ T
Sbjct: 369 IATDIICGFPTETEADFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 428
Query: 399 ELLSLLFSNYK---------FTVMLISIL-VKLHYFSLDDQ-RNVLFGMTKQF 440
+ L+ LF Y+ + V++ I KLHY + +L M K
Sbjct: 429 KRLTDLFYTYEPYAGRVGEVYAVLVTEISHDKLHYVGHNKSYEQILLPMRKNL 481
>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
Length = 556
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 220/417 (52%), Positives = 284/417 (68%), Gaps = 40/417 (9%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 386 PRPGIQFLNLD---------STELLSLLFSNYK---------FTVMLISIL-VKLHY 423
PRPG ++ T+ L+ LF +Y+ +TV++ + KLHY
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHY 459
>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
Length = 556
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/417 (52%), Positives = 284/417 (68%), Gaps = 40/417 (9%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
EEAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 205
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 265
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 386 PRPGIQFLNLD---------STELLSLLFSNYK---------FTVMLISIL-VKLHY 423
PRPG ++ T+ L+ LF +Y+ +TV++ + KLHY
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHY 459
>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/397 (54%), Positives = 277/397 (69%), Gaps = 16/397 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK---NKPRLHDNHLSKTGSLSPKIPGTE 59
DIEDL+ S +P L V V K K N+P+ + + L IP T+
Sbjct: 11 DIEDLI--SLDDPSPAERYLNKKDVTVRTKRVKVRANRPK--ETSTVEKPLLDSVIPETQ 66
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+ I
Sbjct: 67 HIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIE 126
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A K +VVAGCVPQ + L+G+S+VGVQQIDRV EVVEETLKGH VRLL KK+
Sbjct: 127 AAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAKKV 186
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
P L LPKVR+N +E++PIN GCL ACTYCKTK AR L SY V+ +V R +
Sbjct: 187 DGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQQ 246
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
V DGV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G M+R+GMTNPP+ILEHL
Sbjct: 247 VFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILEHL 304
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+A++L HP VYSFLH+PVQSGSDA+L M REY + DF +VD L VPG+ IATDI
Sbjct: 305 DEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIATDI 364
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ICGFPGET+ DF+ T+ L ++Y+FP + I+QF+PRPG
Sbjct: 365 ICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPG 401
>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
Length = 552
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/416 (53%), Positives = 280/416 (67%), Gaps = 40/416 (9%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 57 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKE 105
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
EAD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 106 EADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 165
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 206
IDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 166 IDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 225
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 226 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQL 285
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
V +P MLR+GMTNPP+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL M RE
Sbjct: 286 VEVIPE--HCMLRVGMTNPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKRE 343
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
Y DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+P
Sbjct: 344 YCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFP 403
Query: 387 RPGIQFLNLD---------STELLSLLFSNYK---------FTVMLISIL-VKLHY 423
RPG +D T+ L+ LF +Y+ +TV++ + KLHY
Sbjct: 404 RPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHY 459
>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
Length = 553
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 275/395 (69%), Gaps = 29/395 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 70 VPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-GKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ AL LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY + +V
Sbjct: 189 QNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPG ++ T
Sbjct: 367 IATDIICGFPTETEQDFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 399 ELLSLLFSNYK---------FTVMLISIL-VKLHY 423
+ L+ LF +Y+ +TV++ I KLHY
Sbjct: 427 KRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHY 461
>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
Length = 542
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 272/372 (73%), Gaps = 19/372 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG ++Y+KT+GC+HN SDSEYMAG +S+ GY + D+ ADIWL+N+CTVK+PS+ +
Sbjct: 48 IPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHV 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++ KP++V+GCVPQ + L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL
Sbjct: 108 QNELEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLL 167
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ KK+ LDLPKVRRN VEI+ IN GCL CTYCKTK ARG+L SY++E ++
Sbjct: 168 NYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEII 227
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + I++GVKE+WL+SED GAYGRDI LP LL A+ A+L PDG MLR+GMTNPPF
Sbjct: 228 DRAESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKL-PDG-VMLRLGMTNPPF 285
Query: 288 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I ++EI E+L HPCVYSFLH+PVQSGSDAVL M REY + DF VV+ + + VPG+
Sbjct: 286 HIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGI 345
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DS 397
IATD+ICGFP ET++DF T++L+++Y+F + I+QFYPRPG L D
Sbjct: 346 TIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDR 405
Query: 398 TELLSLLFSNYK 409
T ++ LF++Y+
Sbjct: 406 TRRMTQLFNSYE 417
>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
Length = 554
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/474 (49%), Positives = 300/474 (63%), Gaps = 41/474 (8%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKN---KPRLHDNHLSKTGSL----SP 53
++DIEDL++ P R N V + K KP L D+ +T
Sbjct: 12 IDDIEDLISADD---IKPRDRYE-NKKNVTVRAKKRAPIKPTLSDDEKEETKPQKIIHES 67
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
IPGT+ +Y+KT+GC+HN SDSEYMAGQL++FGY L+ +E AD+WL+N+CTVK+PS+
Sbjct: 68 VIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGKNE-ADLWLLNSCTVKNPSEDT 126
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRL
Sbjct: 127 FRNEIEAGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRL 186
Query: 174 LHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
L KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +
Sbjct: 187 LQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VDRARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGL 364
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------S 397
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPG ++
Sbjct: 365 TIATDIICGFPTETEQDFEETMTLCEKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 398 TELLSLLFSNYK---------FTVMLISIL-VKLHYFSLDDQ-RNVLFGMTKQF 440
T+ L+ LF +Y+ +TV++ I KLHY + VL M K
Sbjct: 425 TKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNL 478
>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
Length = 540
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/412 (51%), Positives = 282/412 (68%), Gaps = 18/412 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVKSP++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEAGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILE+L+E++++L HP VYSFLH+PVQSGSD VL+ M REYT DF VV+ L E VP +
Sbjct: 294 ILEYLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRGDFERVVNFLRERVPELT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPG + + T
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTRIPTQIVKNRT 413
Query: 399 ELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDE 450
+ LS F +Y I ++ ++ + R G K + L+ +E
Sbjct: 414 KRLSEFFQSYFPYFDRIGLVQEVLVTEISHDRKHYVGHNKSYEQVLLPLKEE 465
>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
[Babesia equi]
Length = 643
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/419 (48%), Positives = 294/419 (70%), Gaps = 14/419 (3%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
H +T + +P IPG++T+Y + FGC+HN SDSEYM G LS +GY +TD+ +A + +IN+
Sbjct: 205 HEKETCNHTPLIPGSQTVYFRGFGCAHNSSDSEYMMGILSEYGYNITDDMSKAQVAVINS 264
Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEV 161
CTVK PSQ AM T I K K K P+VV GCVPQ ++L L+ VS++G QIDR+VEV
Sbjct: 265 CTVKGPSQDAMATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEV 324
Query: 162 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
VE L+G ++ LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSY
Sbjct: 325 VEHALQGRKLVLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSY 384
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
T+ES++ RV + ++ V ++WL+SEDTGAYG DIG+++ +LL +I+ LPPD MLR+G
Sbjct: 385 TLESILDRVESAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLG 442
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP+I H++EIA++L+H V+ F+H+PVQSGSD VL AMNREY + +F +VD + E
Sbjct: 443 MSNPPYIKRHIEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNREYHIDEFLFLVDKIRE 502
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---- 397
VP +ATDIICGFP ETDE+ +T+ L+K+ K P V+ISQFYPRPG + +
Sbjct: 503 SVPDCSLATDIICGFPTETDEEHLETIQLLKDLKLPIVNISQFYPRPGTPAAKMKAHPNK 562
Query: 398 -----TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDES 451
T ++ +F +Y+ + + + + D +RN G TK + + +VV D+S
Sbjct: 563 VAKSRTREVTEVFLSYECNSHYLGKTLPVWFSQTDVKRNHTIGHTKNY-IKVVVDKDDS 620
>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
Length = 557
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/416 (53%), Positives = 279/416 (67%), Gaps = 40/416 (9%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 59 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKE 107
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+AD+WL+N+CTVK+PS+ I K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 108 DADLWLLNSCTVKNPSEDTFRNEIESGMKNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 167
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 206
IDRVVEVVEETLKGH VRLL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 168 IDRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 227
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 228 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKL 287
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
V +P MLR+GMTNPP+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M RE
Sbjct: 288 VEVIPE--HCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKRE 345
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
Y DF VVD L E VPG+ IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+P
Sbjct: 346 YCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFP 405
Query: 387 RPGIQFLNLD---------STELLSLLFSNYK---------FTVMLISIL-VKLHY 423
RPG ++ T+ L+ LF Y+ +TV++ I KLHY
Sbjct: 406 RPGTPAAKMERIPANLVKKRTKRLTDLFYTYEPYSGRVGQIYTVLVTEISHDKLHY 461
>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
Length = 526
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 265/371 (71%), Gaps = 18/371 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+ IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+CTVK+PS+
Sbjct: 62 IPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSEDTF 121
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I A K +VVAGCVPQ + L G+S+VGVQQIDRV EVVEETLKGH VRLL
Sbjct: 122 RNEIEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHSVRLL 181
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ P L LPKVR+N +E++PIN GCL +CTYCKTK AR L SY V+ +V
Sbjct: 182 QAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPVQEIV 241
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + V +GV E+WL+SEDTG YGRDI +LP LL +V E+ P+G M+R+GMTNPP+
Sbjct: 242 ERAQQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMTNPPY 299
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL HP VYSFLH+PVQSGSD +L M REY + +F VVD L E VPG+
Sbjct: 300 ILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTILGEMKREYCVQEFERVVDFLREKVPGIT 359
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFPGET+ DF TV L K+Y+FP + I+QF+PRPG ++ T
Sbjct: 360 IATDIICGFPGETETDFQGTVALCKKYEFPSLFINQFFPRPGTPAAKMERVPANEVKTRT 419
Query: 399 ELLSLLFSNYK 409
+ L+ LF +Y+
Sbjct: 420 KRLTDLFHSYE 430
>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
Length = 541
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 268/371 (72%), Gaps = 18/371 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQLS +GY LT++ AD+W++N+CTVK+P++
Sbjct: 57 IPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VV+GCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L
Sbjct: 117 KNEINLARKLGKHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFL 176
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++KK L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E ++
Sbjct: 177 NKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEII 236
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R DG+KE+WL+SEDTGAYG+DI NLP LL ++ ++ PD M RIGMTNPP+
Sbjct: 237 DRAIQAFKDGIKELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPY 294
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+EI ++L+HP VYSFLH+PVQSGSD VL M REY+ SDF +VD L E +P +
Sbjct: 295 ILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSDFENIVDFLKEKIPNIN 354
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS------T 398
IATD+ICGFP ET EDF +T++L ++YKF + I+QF+PR P + + + S T
Sbjct: 355 IATDVICGFPTETSEDFEETMSLCQKYKFSTLFINQFFPRQGTPAAKMIQVPSKEIKNRT 414
Query: 399 ELLSLLFSNYK 409
+L+S F +Y+
Sbjct: 415 KLISEFFQSYE 425
>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
Length = 540
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 277/407 (68%), Gaps = 18/407 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+CTVK+P++
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKNPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HR-------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEGGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R +GV E+WL+SEDTG YGRDIG +LP LL +V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGC-RIRVGMTNPPY 293
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E++++L HP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E VP +
Sbjct: 294 ILEHLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRADFERVVNFLRERVPELT 353
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPG + + T
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTKIPTQIVKNRT 413
Query: 399 ELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
+ LS F +Y I ++ + + R G K + L+
Sbjct: 414 KRLSEFFQSYSPYFERIGLVQDVLVTEISHDRKHYVGHNKSYEQVLL 460
>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
Length = 557
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/396 (54%), Positives = 274/396 (69%), Gaps = 30/396 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNEIKLGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 186
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 187 QNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 364
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------S 397
IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+PRPG ++
Sbjct: 365 TIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 398 TELLSLLFSNYK---------FTVMLISIL-VKLHY 423
T+ L+ LF +Y+ +TV++ + KLHY
Sbjct: 425 TKRLTDLFYSYEPYAKRVGEIYTVLVTEVSHDKLHY 460
>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase, partial [Pongo abelii]
Length = 577
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 266/370 (71%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +VVAGCVPQ L+G+SI+GVQQIDRVVEVVEET+KG+ V L
Sbjct: 120 RNSIKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHL 179
Query: 175 HRKKLPALDLPKVR-------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ K L R + V ++ +N CL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 CKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELV 239
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------T 398
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++ T
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 399 ELLSLLFSNY 408
+ LS +F +Y
Sbjct: 418 KDLSRVFHSY 427
>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
Length = 538
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 256/372 (68%), Gaps = 19/372 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT+TIY+KT+GC+HN SDSEYMAG L+A GY LT++ A +WL+N+CTVKSP++
Sbjct: 57 VPGTQTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPAEDHF 116
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + LV+AGCVPQG+ L G+S+VGV QIDR+VE+VEETLKGH VRL
Sbjct: 117 KNEIELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLF 176
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+KK +L LPKVR+N +EI+PIN GCL CTYCKTKHARG LGSY E +
Sbjct: 177 GQKKTEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEI 236
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R +GV E+WL+SEDTG YGRDIG +LP LL +VA +P LR+GMTNPP
Sbjct: 237 VERATQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIPE--GCRLRLGMTNPP 294
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL E+AE++ HP VY FLHVPVQSGSD VL+ M REY+ DF VVD L E VPG+
Sbjct: 295 YILEHLAEVAEIMHHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAERVPGI 354
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DS 397
IATDIICGFP ETD DF T+ L +Y+F + I+QF+PRPG N+
Sbjct: 355 TIATDIICGFPTETDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQDVKKR 414
Query: 398 TELLSLLFSNYK 409
T+ LS F +Y+
Sbjct: 415 TKKLSEFFRSYE 426
>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
Length = 466
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/359 (55%), Positives = 254/359 (70%), Gaps = 25/359 (6%)
Query: 38 PRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
PR HD + IPG++TI+++T+GCSHN SD EYMAG LSA GY ++D E AD
Sbjct: 30 PR-HDRSRREQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGAD 88
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK+PS+ + I +S P+V+AGCVPQ QIDR
Sbjct: 89 LWILNSCTVKTPSEDTFNNEIRDARSRNIPVVLAGCVPQ---------------TMQIDR 133
Query: 158 VVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCK 210
VVEVVEETL+G VRLL KK+ ALDLPK+RRN +EI+PIN GCL CTYCK
Sbjct: 134 VVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCK 193
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
TKHARG LGSYT++ +V RV+ VIA+GV E+WL+SEDTGAYGRDI ++P LL AI+A +
Sbjct: 194 TKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVV 253
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
P M+R+GMTNPP+I+EH++ IAE LRHP +Y F+H+P+QSG++ +L AM REYT
Sbjct: 254 P--AGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYTRE 311
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DF V DTL+E VP + IATDIICGFPGETD DF T +++ Y FP + +QF+PRPG
Sbjct: 312 DFCFVADTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPG 370
>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 446
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/352 (58%), Positives = 257/352 (73%), Gaps = 17/352 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNS--EEADIWLINTCTVKSPSQ 111
+PG ++++KT+GC HN SD EYMAG L+A GY + D+S EEA +W++N+CTVK PSQ
Sbjct: 1 LPGQASVFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQ 60
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
I K K A K +VVAGCVPQ S E +G+S++GVQQID+VV VVEETLKG+ +
Sbjct: 61 QTFVNDIDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTI 120
Query: 172 RLLHRKKLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
RL+ K + LDLPKVRRN F+EI+PIN GCL CTYCKTKHARG LG
Sbjct: 121 RLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLG 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM 277
SY++ ++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++ LL I+ + M
Sbjct: 181 SYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAM 240
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
LR+GMTNPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS VL M R Y + DF VVD
Sbjct: 241 LRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQDFERVVD 300
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
L E VP + IATDIICGFP ETDEDF++T++L+++YKF +HISQFYPRPG
Sbjct: 301 VLREKVPCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPG 352
>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Acyrthosiphon pisum]
Length = 522
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/394 (53%), Positives = 280/394 (71%), Gaps = 17/394 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
DIEDL++ S A G P N V + PK K KP H ++PGT+TI+
Sbjct: 8 DIEDLIS-SVADVAEIGRVKPRNIVSLRPKV-KVKPVREILHPPS------QVPGTQTIF 59
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GCSHN SD EYMAG LS +GY +T++ AD+W++N+CTVK+P++ I+ K
Sbjct: 60 IKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAEDHFRNEISTGK 119
Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 179
+ K +VVAGCVPQG + ++ +S++GVQQIDRVVEVVEETLKGH +RLL +KK+
Sbjct: 120 KSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQKKINGK 179
Query: 180 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
L LPK+R+NK +EI+ I+ GCL CTYCKTKHARG+LGSY + +V R
Sbjct: 180 KDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRAIESFN 239
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G E+WL+SEDTGAYG DI NLP LL +VA +P M+RIGMTNPP+IL HL+EI
Sbjct: 240 EGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILNHLEEI 297
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
A++L HP VY+FLHVPVQSGS+ VL+ M REY++ +F TVV+ L + VPG+ IATDIICG
Sbjct: 298 AKILSHPRVYAFLHVPVQSGSNQVLADMKREYSIEEFETVVNFLRQRVPGVSIATDIICG 357
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
FP ET+EDF++T+++ ++YKFP + I+QFYPR G
Sbjct: 358 FPTETEEDFSETMSVCEKYKFPSLFINQFYPRKG 391
>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
Length = 460
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 271/371 (73%), Gaps = 18/371 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT IY+KT+GC+HN SDSEYMAGQL+A GY++ +++ AD+WL+N+CTVK+P++
Sbjct: 52 LPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDHF 111
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL
Sbjct: 112 RGAIDSGLRQGKKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLL 171
Query: 175 HRKK-------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK AL LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY++E LV
Sbjct: 172 GSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELV 231
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIG LP LL +VA +P MLR+GMTNPP+
Sbjct: 232 ARAKQAFQEGVREIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPY 289
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL++L+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT + FR V+D L + VPG+
Sbjct: 290 ILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLAEMKREYTAAQFRIVIDFLRKAVPGIT 349
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET+EDF +T+ L++EY+FP + I+QFYPRPG + + T
Sbjct: 350 IATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGTPAAKMKRIPTHVVKERT 409
Query: 399 ELLSLLFSNYK 409
+ LS LF +Y+
Sbjct: 410 KRLSELFQSYQ 420
>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
[Rhipicephalus pulchellus]
Length = 554
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 269/370 (72%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 111 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 170
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 171 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 230
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL IV +P MLR+GMTNPP+
Sbjct: 231 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPY 288
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 289 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 348
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPG ++ + T
Sbjct: 349 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 408
Query: 399 ELLSLLFSNY 408
+ +S LF +Y
Sbjct: 409 KQVSELFQSY 418
>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 550
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 269/370 (72%), Gaps = 18/370 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 87 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 146
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 147 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 206
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 207 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 266
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+
Sbjct: 267 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPY 324
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 325 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 384
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DST 398
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPG ++ + T
Sbjct: 385 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 444
Query: 399 ELLSLLFSNY 408
+ +S LF +Y
Sbjct: 445 KQVSELFQSY 454
>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Metaseiulus occidentalis]
Length = 521
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/424 (50%), Positives = 276/424 (65%), Gaps = 30/424 (7%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL G+ P G +P + P K+K H + +PG +
Sbjct: 14 VDDIEDLDFGNFPRPEPRGQVVP-KIIRKAP--TKDKEEFHGDSF---------VPGHQK 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GCSHN SDSEYM G LSA GY + N +EA +WL+N+CTVK+PS+ + I
Sbjct: 62 IYVKTWGCSHNSSDSEYMGGMLSAAGYPIVSNKDEASLWLLNSCTVKNPSEEHLKNSIRS 121
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S K +VV GCV Q + L+G+SIVG QIDRVVEVVEETLKG+ VRLL K +
Sbjct: 122 ALSQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVK 181
Query: 181 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L LPK+R+N VEIL IN GCL CTYCKTK ARG+LGSY +E +V R +
Sbjct: 182 GKKQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQS 241
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+GVKE+W++SEDTGAYGRDIG+ LP LL +V +P LR+GMTNPP+I++HL+
Sbjct: 242 FQEGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLE 299
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++AE+L HP VYSFLH+PVQSGSD VL M REYT F VVD L + VPG+ IATDII
Sbjct: 300 DMAEILSHPRVYSFLHIPVQSGSDPVLKEMRREYTREQFCQVVDFLRDRVPGITIATDII 359
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------STELLSLL 404
CGFP ET+EDF+ T++L +Y+FP ++I+QFYPRPG L T L+ L
Sbjct: 360 CGFPTETEEDFDDTMSLCAKYEFPSLYINQFYPRPGTPAAKLKRIPTEIVKHRTRRLTQL 419
Query: 405 FSNY 408
F +Y
Sbjct: 420 FDSY 423
>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
Length = 555
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 252/342 (73%), Gaps = 9/342 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ IY+KT+GC+HN SDSEYMAGQL+++GY +T + +A++WL+N+CTVK+PS+
Sbjct: 63 IPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPSEDTF 122
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I + K +V+AGCVPQ + + + G+SIVGVQQ+DRV EVVEETLKGH VRLL
Sbjct: 123 RNEILAAEKMGKHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHSVRLL 182
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ P L LPKVR+N +EI+PIN GCL CTYCKTK AR L SY VE ++
Sbjct: 183 QPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPVEEII 242
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R V +GV E+WL+SEDTG YGRDIG +LP LL +V E+ PD + LR+GMTNPP+
Sbjct: 243 ERATQVFQEGVCEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMTNPPY 300
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL E+A++L HP VY FLHVPVQSGSD+VL M REY +DF + D L + VPG+
Sbjct: 301 ILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVLGEMKREYCRADFERICDFLKQKVPGIT 360
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDIICGFP ET+ DF T++L +Y+FP + I+QFYPRPG
Sbjct: 361 IATDIICGFPTETEADFEHTMSLCAKYEFPSLFINQFYPRPG 402
>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Strongylocentrotus purpuratus]
Length = 556
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 284/402 (70%), Gaps = 22/402 (5%)
Query: 25 NAVGVNPK-YNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLS 83
N V PK N+ K R + K S+ IPGT+ +++KT+GCSHN SD EYMAGQL+
Sbjct: 29 NKQDVMPKVLNRKKDRRKNGEDIKADSI---IPGTQKVFVKTWGCSHNNSDGEYMAGQLA 85
Query: 84 AFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKE 143
++GY++TD+S AD+WL+N+CTVK+P++ I K + K LV+AGCVPQG K
Sbjct: 86 SYGYSITDDSSGADVWLLNSCTVKNPAEDHFRNEIQKAQQQGKALVLAGCVPQGQPKAKY 145
Query: 144 LEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-------HRKKLPALDLPKVRRNKFVEIL 196
++GVS++GVQQIDRVVEVVEET+KG+ VRL + +LDLPK+RRN VEIL
Sbjct: 146 MQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEIL 205
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
IN GCL CTYCKTKHARG LGSY E LV R + +GV E+WL+SEDTGAYG DIG
Sbjct: 206 AINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAYGIDIG 265
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
V + LL+ +V E+ P+G M+RIGMTNPP+IL+HL+ IA +LRHP VYSFLH+P+QSGS
Sbjct: 266 VTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGS 323
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
D+VL M REY +DFR +V+ L + VP + IATDIICGFP E+++DF +T++LI+E+KF
Sbjct: 324 DSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKF 383
Query: 377 PQVHISQFYPRPGIQFLNLDS---------TELLSLLFSNYK 409
P V I+Q++PRPG T+ L++LF +Y+
Sbjct: 384 PSVFINQYFPRPGTPAAKWPQVPAQEKKRRTKALTVLFKSYQ 425
>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/395 (55%), Positives = 275/395 (69%), Gaps = 29/395 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPG ++ T
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 399 ELLSLLFSNYK---------FTVMLISIL-VKLHY 423
+ L+ LF +Y+ +TV++ I KLHY
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHY 459
>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
Length = 553
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/395 (55%), Positives = 275/395 (69%), Gaps = 29/395 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+CTVK+PS+
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPG ++ T
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 399 ELLSLLFSNYK---------FTVMLISIL-VKLHY 423
+ L+ LF +Y+ +TV++ I KLHY
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHY 459
>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
Length = 1581
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 197/341 (57%), Positives = 251/341 (73%), Gaps = 12/341 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I + P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAQKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPG
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPG 389
>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
Length = 554
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/410 (49%), Positives = 278/410 (67%), Gaps = 16/410 (3%)
Query: 46 SKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
S GS +PG + I+ KTFGCSHN SDSEYM G LS +GY +AD+ ++N+C
Sbjct: 110 SVVGSGDGNLPGAGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSC 169
Query: 105 TVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE 164
TVK+PS+ A+ TL+ ++ P VV GCVPQ R + L S+VG QIDR+VEVVEE
Sbjct: 170 TVKNPSEDALATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEE 229
Query: 165 TLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
TL+G+ V LL KKLP L +LPK+RRN VEI+ +N GCLG C+YCKTK+ARG LGSY+
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSK 289
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ RVRT +A+GV+++WL+SED GAYG DIG N+ LL IV EL +M+R+GMT
Sbjct: 290 EDIIARVRTALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMT 349
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NPP+IL+H +E+A++L HP V+ F+H+P+QSGS+ VL M REYT+ DF +V L V
Sbjct: 350 NPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRLVGILRARV 409
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QF 392
P + +ATD+ICGFP E++E+ +T+ LIK ++FP ++ISQFY RPG +
Sbjct: 410 PNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARIRPRLPGKV 469
Query: 393 LNLDSTELLSLLFSNYKFTVMLISI--LVKLHYFSLDDQRNVLFGMTKQF 440
+ STE+ + LF +Y T L I +V++ Y +D+ R G TK++
Sbjct: 470 IKERSTEVTN-LFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVGHTKRY 518
>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
Length = 1590
Score = 409 bits (1051), Expect = e-111, Method: Composition-based stats.
Identities = 197/341 (57%), Positives = 250/341 (73%), Gaps = 12/341 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTCTVKSPSQSAMD 115
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+CTVK+P++
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
I P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAHKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 176 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPG
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPG 389
>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
Length = 554
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/395 (55%), Positives = 275/395 (69%), Gaps = 29/395 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ + +EAD+WL+N+CTVK+PS+
Sbjct: 70 IPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-SKDEADLWLLNSCTVKNPSEDTF 128
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+SI+GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V
Sbjct: 189 QNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIV 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------ST 398
IATDIICGFP ET+EDF +T++L K+Y+FP + I+QF+PRPG ++ T
Sbjct: 367 IATDIICGFPTETEEDFEETMSLCKKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 399 ELLSLLFSNYK---------FTVMLISIL-VKLHY 423
+ L+ LF +Y+ +TV++ I KLHY
Sbjct: 427 KRLTDLFYSYEPYAGREGQVYTVLVTEISHDKLHY 461
>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Cavia porcellus]
Length = 613
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/411 (50%), Positives = 271/411 (65%), Gaps = 65/411 (15%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+NS EAD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENSSEADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLK-------------------------------- 142
I L + G VP G+R +
Sbjct: 119 RNSINFF------LQIFGLVPAGNRHSQWYAQAPGISGPAEPVQPRLLGAGVCTDGWLSS 172
Query: 143 ---------ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPK 186
L G++ V VQQIDRVVEVVEET+KGH VRLL +KK LDLPK
Sbjct: 173 DSTGGERQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPK 232
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE 246
+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SE
Sbjct: 233 IRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSE 292
Query: 247 DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
DTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+
Sbjct: 293 DTGAYGRDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYA 350
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +
Sbjct: 351 FLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQE 410
Query: 367 TVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLLFSNY 408
TV L++EYKFP + I+QFYPRPG ++ T+ LS +F +Y
Sbjct: 411 TVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQIFHSY 461
>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
Length = 552
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 216/396 (54%), Positives = 275/396 (69%), Gaps = 30/396 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+CTVK+PS+
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 185
Query: 175 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 303
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 304 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---------S 397
IATDIICGFP ET+EDF +T+ L +Y+FP + I+QF+PRPG ++
Sbjct: 364 TIATDIICGFPTETEEDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 423
Query: 398 TELLSLLFSNYK---------FTVMLISIL-VKLHY 423
T+ L+ LF +Y+ +TV++ + KLHY
Sbjct: 424 TKRLTDLFYSYEPYAERVGEVYTVLVTEVSHDKLHY 459
>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
Length = 542
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/426 (50%), Positives = 274/426 (64%), Gaps = 25/426 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ S P V V + N K ++ + L +PGT+T
Sbjct: 9 IDDIEDLI--SSQDITPKERYASRKNVSVRSRKNNTK----ESEPVEKVILQSVVPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY+KT+GC+HN SDSEYM G L+A GY LTD+ A +WL+N+CTVK+P++ I
Sbjct: 63 IYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCTVKNPAEEHFRNEIEL 122
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 179
++ +VVAGCVPQG+ L G+SIVGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 123 GQARGIHVVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTD 182
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R
Sbjct: 183 DGKKAGGASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQ 242
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTG YGRDIG +LP LL+ VA +P LR+GMTNPP++LEHL
Sbjct: 243 SFKEGVCEIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHL 300
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+A ++RH VY FLHVPVQSGSD VL+ M REY+ DF VVD L + VPG+ IATDI
Sbjct: 301 PRVAGIMRHSRVYKFLHVPVQSGSDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDI 360
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSL 403
ICGFP ET D TV+L ++Y+FP + I+QF+ RPG N+ T+ LS
Sbjct: 361 ICGFPTETAADHELTVSLCRQYRFPSLFINQFFARPGTPAANMTKVPGQEVKKRTKELSE 420
Query: 404 LFSNYK 409
LF +Y+
Sbjct: 421 LFRSYE 426
>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 530
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/415 (49%), Positives = 280/415 (67%), Gaps = 17/415 (4%)
Query: 2 EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETI 61
++IE+ AG GG RLP + V + + K R+ + + G + +PG +
Sbjct: 3 DEIEEAAAGLVGGVRRT--RLPGDGVAI-----QQKRRVPEGDRVEQGKDAGFVPGCACV 55
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GCSHN SD EYMAG LSA GY + + AD+W++N+CTVK+PS+ + I +
Sbjct: 56 YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIREG 115
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ K LV+AGCV Q K +G+SIVG+ QIDRV+EVVEETL+G VRLL +K A
Sbjct: 116 QKLGKKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGA 175
Query: 182 ----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L +PK+RRN+ +EI+PIN GCL CTYCKTKHARG L SY + +V RVR V+A+G
Sbjct: 176 GGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEG 235
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
V E+WL+SEDTG YGRD + LL I+ E+ PDG MLR+GMTNPP+ILEHL+E+A+
Sbjct: 236 VVEIWLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAK 293
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+L HP VY+FLH+P+Q+ SDAVL+ M REY +F +VD L E VP + IATDIICGFP
Sbjct: 294 ILNHPRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLRERVPNVTIATDIICGFP 353
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL----NLDSTELLSLLFSNY 408
GET+EDF +T++L ++YKFP + I+Q + P + L T+ LS LF +Y
Sbjct: 354 GETEEDFQETMDLCEKYKFPSLFINQAHLLPAWRELIPATVKKRTKRLSELFQSY 408
>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 541
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/397 (53%), Positives = 273/397 (68%), Gaps = 45/397 (11%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS-- 112
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+CTVK+P++
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 113 ----------------------AMDTLIAKCKSA---KKPLVVAGCVPQGSRDLKELEGV 147
A D ++A K +VVAGCV Q + ++ L G+
Sbjct: 111 RGAIEAALHQGKKVVVAGXXNPAEDHFRGAIEAALHQGKKVVVAGCVSQATPNVGYLRGL 170
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINV 200
SIVGVQQ DRVVEVVEETLKG+ VRLL KK L LPK+RRN VEI+ IN
Sbjct: 171 SIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINT 230
Query: 201 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 260
GCL CTYCKTKHARG LGSY ++ LV R + +GV+E+WL+SEDTGAYGRDIGV LP
Sbjct: 231 GCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLP 290
Query: 261 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 320
LL +V +P MLR+GMTNPP+IL+HL+++AE+L HP VYSFLHVPVQSGSD VL
Sbjct: 291 DLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVL 348
Query: 321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 380
+ M REYT++ FR+VVD L + VPG+ IATDIICGFP ET+EDF +T+ L+++Y+FP +
Sbjct: 349 TEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPTETEEDFEETMQLVRDYEFPSLF 408
Query: 381 ISQFYPRPGIQFLNL---------DSTELLSLLFSNY 408
I+QFYPRPG ++ + T+ +S LF +Y
Sbjct: 409 INQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSY 445
>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
Length = 478
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/418 (49%), Positives = 282/418 (67%), Gaps = 27/418 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---DSTEL------LSLLFSNY 408
T DF +++ L+++Y+FP + I+QFY R G NL D+ E +S LF +Y
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSY 401
>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
Length = 465
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/418 (49%), Positives = 280/418 (66%), Gaps = 27/418 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+CTVK+PS++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 179
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFLEEISEIL 283
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSLLFSNY 408
T DF +++ L+++Y+FP + I+QFY R G NL T +S LF +Y
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSY 401
>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
Length = 507
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/335 (54%), Positives = 250/335 (74%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP +++ TFGC+HN +D EYM G LS +G+ +N +EA +W++N+CTVK PS+
Sbjct: 48 IPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKDPSEIVF 107
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K +VVAGCVPQ D L +SI+GV+QI R+VEVVEETLKG+ + LL
Sbjct: 108 RNYVTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLL 167
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K+LP LDLPK+RR+ +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R
Sbjct: 168 SLKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAF 227
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ V EVWLSSEDTGAYG D G+++ LL I + +P +TM+R+GMTNPP++L HLKE
Sbjct: 228 DEHVFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKE 287
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+A LRHP V+SF+H+PVQSGS+AVL+ M R+YT+ F ++VD L++ VPG+ IATDII
Sbjct: 288 VAAFLRHPNVFSFIHIPVQSGSNAVLNTMQRQYTVEQFTSIVDYLLKEVPGLTIATDIII 347
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GF ETDED QT++L+K+Y+FP V+IS+F+PRPG
Sbjct: 348 GFASETDEDHKQTMDLLKKYQFPVVNISKFFPRPG 382
>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/310 (60%), Positives = 239/310 (77%), Gaps = 9/310 (2%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 380 HISQFYPRPG 389
I+QFYPRPG
Sbjct: 320 FINQFYPRPG 329
>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Homo sapiens]
Length = 488
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/310 (60%), Positives = 239/310 (77%), Gaps = 9/310 (2%)
Query: 87 YALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 146
+ +T+N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 147 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 199
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 259
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 260 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 319
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 320 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 379
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 380 HISQFYPRPG 389
I+QFYPRPG
Sbjct: 320 FINQFYPRPG 329
>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like, partial [Gorilla gorilla
gorilla]
Length = 440
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/333 (56%), Positives = 245/333 (73%), Gaps = 18/333 (5%)
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 151
N+ +AD+WL+N+CTVK+P++ I K + K +V+AGCVPQ L+G+SI+G
Sbjct: 1 NASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIG 60
Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLG 204
VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN GCL
Sbjct: 61 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 120
Query: 205 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 264
ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL
Sbjct: 121 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLW 180
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD++L M
Sbjct: 181 KLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSILMEMK 238
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QF
Sbjct: 239 REYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQF 298
Query: 385 YPRPGIQFLNLDS---------TELLSLLFSNY 408
YPRPG ++ T+ LS +F +Y
Sbjct: 299 YPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSY 331
>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
Length = 535
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/364 (54%), Positives = 261/364 (71%), Gaps = 12/364 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PGTETI+++T+GCSHN SDSEYM G LS GY + E A +W++N+CTVK+PS+ +
Sbjct: 44 VPGTETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQL 103
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K K AKK +VVAGCV Q + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL
Sbjct: 104 ENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLL 163
Query: 175 HRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
RK+ L LPK+RRN +E+L ++ GCL CTYCKTK ARG L SY E LV +
Sbjct: 164 SRKRPEQKLSLPKMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRA 223
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
++G +E+WL+SED GA+GRD G+ LP LL A+V ++ P+G M+R+GMTNPP+IL+ L
Sbjct: 224 FSEGCREIWLTSEDLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLD 281
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EIAE+L HP VYSFLH+PVQSGSDAVL MNREY+ +DF VVD +++ VP + IATD I
Sbjct: 282 EIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQNVPNVYIATDFI 341
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDSTE------LLSLL 404
C FP ET EDF +++ L+ Y+FP V I+QFYPR P + + +TE +S L
Sbjct: 342 CAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAARLKKITTTEARRRTAAMSSL 401
Query: 405 FSNY 408
F +Y
Sbjct: 402 FRSY 405
>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Oryzias latipes]
Length = 494
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/336 (56%), Positives = 241/336 (71%), Gaps = 18/336 (5%)
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+ D+ EAD+WL+N+CTVK+P++ I K + K +VVAGCVPQ + L+ +S
Sbjct: 25 ILDDPAEADLWLLNSCTVKNPAEDHFRNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKSLS 84
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVG 201
I+GVQQIDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN G
Sbjct: 85 IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEGGRRLGGARLDLPKIRKNPLIEIISINTG 144
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL ACTYCKTKHARG L SY +E LV RVR +GV E+WL+SEDTGAYGRDIG +LP
Sbjct: 145 CLNACTYCKTKHARGDLASYPIEELVKRVRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPT 204
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V ++P DG+ MLR+GMTNPP+ILEHL E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 205 LLWRLVEQIP-DGA-MLRLGMTNPPYILEHLGEMAKILNHPRVYAFLHVPVQSASDSVLM 262
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M REY + DF+ VVD L E VPG+ IATDIICGFPGET+EDF +T+ L+K Y+FP + I
Sbjct: 263 DMKREYCIDDFKRVVDFLKERVPGVTIATDIICGFPGETEEDFQETLELVKLYRFPSLFI 322
Query: 382 SQFYPRPGIQFLNLDS---------TELLSLLFSNY 408
+QFYPRPG ++ T LS LF +Y
Sbjct: 323 NQFYPRPGTPAAKMEQVPAQVKKQRTRELSQLFHSY 358
>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 578
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/463 (44%), Positives = 294/463 (63%), Gaps = 37/463 (7%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
DIED+ S G+ G +P+ + N+ + L +++ P IPG T++
Sbjct: 47 DIEDVCC-SLSSGSMRGPSVPMIS-------NRRRRVLREDY-------GPGIPGNATVF 91
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC HN SD EYMAGQL+ G+ +TD +ADI+L+N+CTVK+PS+ ++ + +
Sbjct: 92 VHTFGCGHNMSDGEYMAGQLAQSGFQITDEFSQADIYLLNSCTVKNPSEEHFVNMMNRVR 151
Query: 123 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-------- 174
+ KPLVVAGCVPQ D K+ VS++GV+ IDRV VV ETL+G+ VRL+
Sbjct: 152 ATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVRLIGSDKEQLR 211
Query: 175 --HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
KLPALDLPKVRRNK++EI+PI+VGCL CTYCKTK+ARG L SY V +VGRVR
Sbjct: 212 VGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYPVSEIVGRVRE 271
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNPPFILEH 291
V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ AEL +GS MLR+GM+NPP++L H
Sbjct: 272 VVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVGMSNPPYLLRH 329
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ + A +LRHP VY F+H+PVQSGS+ +L M REYT+ +F +D + VP + +ATD
Sbjct: 330 VDDFASILRHPNVYEFVHIPVQSGSNRILKTMLREYTVEEFCKCMDAIRTAVPRVTLATD 389
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS------TELLS 402
IIC FPGE + ++ +T+ L + KF ++I++FYPR P + + T L+
Sbjct: 390 IICAFPGEGEAEWRETMRLCEVAKFGVINITRFYPRRNTPAAAMKQIPTDIAKQRTTELT 449
Query: 403 LLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
F++Y+ ++ + ++ ++ L G TK + LV
Sbjct: 450 NFFNSYRTYDAMVGDVCQVTLLETAHDKHHLVGHTKNYVQVLV 492
>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
parvum]
gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
Length = 543
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/419 (47%), Positives = 273/419 (65%), Gaps = 30/419 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---- 396
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPG +
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 397 ------STELLSLLFS----NYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
S+E+ + S Y F + +VK+ + ++ N G TK ++ LV
Sbjct: 456 GVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLV 514
>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
Length = 437
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/370 (51%), Positives = 265/370 (71%), Gaps = 15/370 (4%)
Query: 55 IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
+PG + ++++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+
Sbjct: 4 VPGVGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQ 63
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++VRL
Sbjct: 64 ANNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRL 123
Query: 174 LHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV + R
Sbjct: 124 LTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARA 183
Query: 233 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG M+R+GMTNPP+IL+H
Sbjct: 184 AFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDH 241
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L+EIAE+L +P VY+FLH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD
Sbjct: 242 LEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIENVPNIYIATD 301
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDSTE------LLS 402
+I FP ET EDF +++ L+++YKFP + I+Q+YPR P + +D+ E +S
Sbjct: 302 MILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMS 361
Query: 403 LLFSNY-KFT 411
LF +Y +FT
Sbjct: 362 ELFRSYTRFT 371
>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
Length = 493
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 248/349 (71%), Gaps = 16/349 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPG
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPG 444
>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
Length = 560
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/434 (47%), Positives = 285/434 (65%), Gaps = 39/434 (8%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT-ETI 61
DIED++ G G G+ + I PK ++ P ++ +PG + +
Sbjct: 2 DIEDIV-GRGPVGSRDAAEIKIRTRKQLPKEKEDVP-----------NVDSMVPGVGQKV 49
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GCSHN SDSEYMAG L GY + E AD+W++N+CTVK+PS+ + L+ +
Sbjct: 50 WVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANNLVVQG 109
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV---------- 171
+ K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++V
Sbjct: 110 QEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPTILRTSRL 169
Query: 172 --RLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
RLL R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV
Sbjct: 170 HVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVE 229
Query: 229 RVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ R D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDGS M+R+GMTNPP+
Sbjct: 230 QARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGS-MMRLGMTNPPY 287
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+ M REY+ F + D +I+ VP +
Sbjct: 288 ILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIKHVPNIY 347
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDSTE----- 399
IATD+I FP ET EDF +++ L+++YKFP + I+Q+YPR P + +D+ E
Sbjct: 348 IATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTIEARKRT 407
Query: 400 -LLSLLFSNY-KFT 411
+S LF +Y +FT
Sbjct: 408 AAMSELFRSYTRFT 421
>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
Length = 543
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/419 (46%), Positives = 273/419 (65%), Gaps = 30/419 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+CTVK PSQ +
Sbjct: 98 VPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 175 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGS 277
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y +E+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD---- 396
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPG +
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 397 ------STELLSLLFS----NYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
S+E+ ++ S Y F + +VK+ + ++ N G TK ++ LV
Sbjct: 456 GVSKGRSSEITNIFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLV 514
>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 548
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/440 (43%), Positives = 277/440 (62%), Gaps = 45/440 (10%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K+PG I M+ FGC+HN+SDSE M G L +GY + + ++ D+ +IN+CTVKSPS+ +
Sbjct: 83 KVPGIGRIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMS 142
Query: 114 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
L+ + KK +VV GC+PQ R L L+ VS++GV R+VE+VE TL+G+ V +
Sbjct: 143 CRNLVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEM 202
Query: 174 LHRK------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 215
+ +LP L+LPK+R+N VEI+ ++VGCLG CTYCKTK++R
Sbjct: 203 ISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSR 262
Query: 216 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 275
G+LGSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL L+ I+ +PPD
Sbjct: 263 GNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD-- 320
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
M+RIGMTNPP+IL ++++ EVL HP V+ FLH+PVQSGS+ VL+ M R+YT DF +
Sbjct: 321 VMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYTREDFCKL 380
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
VD + + + IATDIICGFPGET+ED TV LIK+YKFP ++IS+FYPRPG +
Sbjct: 381 VDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRPGTPAAKM 440
Query: 396 D----------STELLSLLFS---------------NYKFTVMLISILVKLHYFSLDDQR 430
S E+ ++L S Y + + I+V++ + D
Sbjct: 441 KAVPNGISKRRSLEITNILHSLKYNEELLEKLRLNMKYNLSTSISDIIVRVWFIENSDIS 500
Query: 431 NVLFGMTKQFHLYLVVTHDE 450
G TKQ+ +V D+
Sbjct: 501 IHTIGHTKQYTKVIVEKDDK 520
>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
DAL972]
Length = 535
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/413 (46%), Positives = 268/413 (64%), Gaps = 22/413 (5%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ IDRV VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS- 397
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR P + +
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 398 -----TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLV 455
>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
Length = 447
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 250/341 (73%), Gaps = 12/341 (3%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MAG LSA G+ LT+ E+A +W++N+CTVK+PS++ ++ ++ + + K ++VAGCV Q
Sbjct: 1 MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNKFIIVAGCVSQA 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEIL 196
+L+ L+G+SIVGV+QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKFVEIL
Sbjct: 61 EPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLLPKIRKNKFVEIL 120
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I+ GCL CTYCKTK ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI
Sbjct: 121 AISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDID 180
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
+ LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS S
Sbjct: 181 MVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSAS 238
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
DAVLS M REYT +DF VVD +I+ VP + IATD IC +P ET+ DF +++ L+++Y+F
Sbjct: 239 DAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRF 298
Query: 377 PQVHISQFYPRPGIQFLNLDS---------TELLSLLFSNY 408
P + I+QFYPR G NL T +S LF +Y
Sbjct: 299 PSLFINQFYPRIGTPAANLKKIDTIEARRRTAEMSSLFRSY 339
>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 535
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/413 (46%), Positives = 267/413 (64%), Gaps = 22/413 (5%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+CTVK+PS+
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 113 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+++ + + KPL+VAGCVPQ K+ VS+VGV+ ID V VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVR 164
Query: 173 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 281
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVG 282
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS- 397
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR P + +
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 398 -----TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLV 455
>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/410 (44%), Positives = 268/410 (65%), Gaps = 20/410 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS---- 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR P + +
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 --TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 404 RRTSELTEFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLV 453
>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
Length = 750
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/336 (50%), Positives = 240/336 (71%), Gaps = 4/336 (1%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG +Y+K FGCSHN SDSEYM G +S GYA+TD + D+ +IN+CTVK+PS+ M
Sbjct: 323 PGEVVVYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMI 382
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I + K ++V GC+PQ + + +S++G+ QI+++V V+E L G+ V +
Sbjct: 383 NYINQGLKLGKKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVM 442
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L +KKLP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV +
Sbjct: 443 LEKKKLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESC 502
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I++GVKE+WL+SED GAYG D+G N+ LL++I+A LP D MLR+GM NPP+I +++
Sbjct: 503 ISEGVKEIWLTSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYIS 560
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ E+LRH V+ F+H+PVQS SD+VL MNREY L DF +V + E VP IATDII
Sbjct: 561 EVCEILRHENVFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKEKVPNCTIATDII 620
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFP ET ED TV+ +++ K ++ISQ+Y R G
Sbjct: 621 CGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKG 656
>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/410 (44%), Positives = 268/410 (65%), Gaps = 20/410 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS---- 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR P + +
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 --TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 404 RRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLV 453
>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 267/410 (65%), Gaps = 20/410 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG L+ GY +TD AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 175 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNLDS---- 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR P + +
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 --TELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 404 RRTSELTEFFNSYRTLDQMVGEVHSVALLETAHDKHHLVGHTKAYVQVLV 453
>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
Length = 530
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 268/410 (65%), Gaps = 20/410 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP T+++ TFGCSHN SD EYMAG LS GY +TD +AD++L+N+CTVK+PS+
Sbjct: 45 IPSNATVFVHTFGCSHNVSDGEYMAGLLSQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLI 164
Query: 175 ----HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
H K LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GMNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEV-QGTEVMVRVGMSN 283
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REY L +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYNLEEFYECVHRIRSVVP 343
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNL------ 395
+ +ATDIIC FPGE + ++ +T+ + + +FP ++I++FYPR P +
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMEVCEHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 396 DSTELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLV 445
T L+ F++Y+ ++ + + ++ L G TK + LV
Sbjct: 404 QRTSELTEFFNSYRTFDHMVGEVHSVTLLETAHDKHHLVGHTKAYVQVLV 453
>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
anophagefferens]
Length = 446
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 184/350 (52%), Positives = 242/350 (69%), Gaps = 15/350 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN---SEEADIWLINTCTVKSPSQ 111
+P T+ +Y++TFGCSHN SDSEYM G L++ GY ++ + ++ AD W++N+CTVK PSQ
Sbjct: 3 LPETKRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQ 62
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVV 162
+A + + K +VV+GC+PQG R L EL+G S VG++QI RV E V
Sbjct: 63 AAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAV 122
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
L+G L LP+L+LPKVR N VEI+P++ GCLGAC YCKT+HARG LGSY
Sbjct: 123 AAALRGETFHALGSGPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYA 182
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ +V RV +ADGV EVWLSSEDTGAYG D+G +L LL A++ L MLR+GM
Sbjct: 183 LADIVARVDGALADGVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGM 242
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--MNREYTLSDFRTVVDTLI 340
TNPP++L+ L+ + L H VY+FLHVPVQSGSDAVL+ MNREYT++DFR VVD L
Sbjct: 243 TNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLAKDRMNREYTVADFRAVVDGLA 302
Query: 341 ELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
V G+ + TD+ICGFPGETD+DF+ T L+++Y F ++ISQFY RPG
Sbjct: 303 ARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYARPG 352
>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Ailuropoda melanoleuca]
Length = 429
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 241/338 (71%), Gaps = 18/338 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL----IELV 343
I EHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E
Sbjct: 297 ISEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKENQTEGN 356
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
P Q+ G PG F +T ++++E + Q+ +
Sbjct: 357 PNSQVR-----GVPGSLLTMFWKTQSVVEEPEQSQLKV 389
>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Hydra magnipapillata]
Length = 474
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 233/329 (70%), Gaps = 18/329 (5%)
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 155
AD+WL+N+CTVK+P++ + I K + K +V+AGCVPQG + ++G+SIVGVQQI
Sbjct: 8 ADLWLLNSCTVKNPAEESFKNEIKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQI 67
Query: 156 DRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTY 208
DRVVEVVEETLKGH VRL +KKL L+LPK+R+N +EI+ IN GCL CTY
Sbjct: 68 DRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTY 127
Query: 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 268
CKTKHARG LGSY E +V RV+ +GV E+WL+SEDTGAYG+DIGV LP LL I+
Sbjct: 128 CKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIE 187
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+PP G ++RIGMTNPP+I E+L E+A++L HP VYSFLH+PVQSGS+ VL M REY
Sbjct: 188 VIPPGG--LMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMKREYR 245
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ DF+ V+ L + VP + IATDIICGFP ET EDF + L++EY+FP + I+QF+PRP
Sbjct: 246 IEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQFFPRP 305
Query: 389 GIQFLNLD---------STELLSLLFSNY 408
G N+ T ++S +F +Y
Sbjct: 306 GTPAANMKRVPTDEVKRRTRVISDIFQSY 334
>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
Length = 351
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 172/294 (58%), Positives = 225/294 (76%), Gaps = 9/294 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKE 350
>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
Shintoku]
Length = 873
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/352 (50%), Positives = 242/352 (68%), Gaps = 6/352 (1%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
L DN + + S P IY K FGCSHN SD EYM G L +GY + D E++ +
Sbjct: 433 LSDNSMDQLYDAS--TPELTKIYFKNFGCSHNISDGEYMLGLLVEYGYKIVDTMEKSHLV 490
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDR 157
+IN+CTVK PS+ AM T+I + P+VV+GCVPQ ++ +S++G+ QIDR
Sbjct: 491 IINSCTVKGPSEEAMVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDR 550
Query: 158 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
+VEVVE +L+G+++ LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG
Sbjct: 551 IVEVVENSLQGNKMVLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGV 610
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
LGSY +E ++ RV + + +GVKE+WL+SED GAYG DIG NL LL +IV LP TM
Sbjct: 611 LGSYDIEIILDRVESCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTM 668
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
LR+GM+NPPFI +++ EI E+L H VY F+H+PVQS S++VL MNREY + +F +V
Sbjct: 669 LRLGMSNPPFIKKYIDEICEILLHDNVYEFIHIPVQSFSNSVLKKMNREYKVEEFLHLVK 728
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T+ VP IATD+I GFP E E T N+++E K P V+ISQ+Y R G
Sbjct: 729 TIRTKVPNCMIATDVISGFPTEKPEHHMATRNMLEELKLPVVNISQYYARKG 780
>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
Length = 464
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 179/314 (57%), Positives = 226/314 (71%), Gaps = 18/314 (5%)
Query: 111 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 170
Q I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH
Sbjct: 4 QDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHS 63
Query: 171 VRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +
Sbjct: 64 VRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPI 123
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMT
Sbjct: 124 DELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMT 181
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NPP+ILEHL+E+A++L HP VY+FLH+PVQ SD+VL M REY ++DF+ VVD L E V
Sbjct: 182 NPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLKEKV 241
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS------ 397
PG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG ++
Sbjct: 242 PGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVK 301
Query: 398 ---TELLSLLFSNY 408
T+ LS +F +Y
Sbjct: 302 KQRTKDLSRVFHSY 315
>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Meleagris gallopavo]
Length = 327
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 222/305 (72%), Gaps = 18/305 (5%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 61 NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDI
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI 238
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL---------DSTELLSL 403
ICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPG + T+ LS
Sbjct: 239 ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQ 298
Query: 404 LFSNY 408
LF +Y
Sbjct: 299 LFHSY 303
>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
Length = 750
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 168/347 (48%), Positives = 235/347 (67%), Gaps = 17/347 (4%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY+K FGCSHN SDSEYM G +S GY +T+N EE D+ +IN+CTVK+PS+ AM
Sbjct: 312 PSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMV 371
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRD-------------LKELEGVSIVGVQQIDRVVEVV 162
I + K ++V GC+PQ + L +L VG+ QID+++ V+
Sbjct: 372 NYINQGLKLNKRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNS--VGIMQIDKIIYVI 429
Query: 163 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E + G+ V LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY
Sbjct: 430 ENVMNGNRVVLLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYE 489
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+E+++ RV + +++GVKE+WL+SED GAYG D+G N+ LL +I+ LP + MLR+GM
Sbjct: 490 IEAILDRVESSVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGM 547
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
NPP+I +++ EI E+L H V+ F+H+PVQS SDAVL MNREY L DF +V +
Sbjct: 548 CNPPYIKKYINEICEILSHDNVFEFIHIPVQSCSDAVLEKMNREYLLEDFLYIVSVIKAK 607
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P IATDIICGFP ET++D TV +++ K ++ISQ+Y R G
Sbjct: 608 LPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRKG 654
>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
Length = 659
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 214/536 (39%), Positives = 282/536 (52%), Gaps = 116/536 (21%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY- 87
V ++ + L D +++ IP ++++T+GC+HN SDSEYMAG L+ +GY
Sbjct: 22 VKVRFRTRRQNLADTDSDSVTTMA--IPEHYRVFVQTWGCAHNTSDSEYMAGLLAQYGYQ 79
Query: 88 ---------------ALTDNSE-----------------------------------EAD 97
A ++NSE EAD
Sbjct: 80 VILGGSTKDSHEPVSAQSNNSECECSSGLAGDCCQKQEDKGCCTMPGLLTADERAKQEAD 139
Query: 98 IWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 157
+W++N+CTVK P++ + K LVVAGCVPQ L+GVSI+GVQQIDR
Sbjct: 140 LWVLNSCTVKGPAEDHFRNAVKAGMRMGKRLVVAGCVPQSHPAADYLKGVSIIGVQQIDR 199
Query: 158 VVEVVEETLKGHEVRLL--------------HRKKL--PALDLPKVRRNKFVEILPINVG 201
VVEVVEETL+G+ VR L R++L LDLPK+RRN +EIL ++ G
Sbjct: 200 VVEVVEETLQGNTVRFLDKKWAVSGDGDSHSERRRLGGARLDLPKIRRNPLIEILAVSTG 259
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG----- 256
CL ACTYCKTKHARG L SY +E L+ R + ADGVKE+WL+SED GAYGRD+
Sbjct: 260 CLNACTYCKTKHARGVLASYPIEELLERAKQAFADGVKELWLTSEDLGAYGRDLDRTTSV 319
Query: 257 -------------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 303
+ L LL+ +V L P+G MLR+GMTNPP+ILE L+EIA+VL HP
Sbjct: 320 YSCPSMAARFPQCLTLADLLSGLV-RLIPEGC-MLRLGMTNPPYILEQLREIADVLSHPR 377
Query: 304 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV--------------DTLIELVPG---M 346
VY+FLHVPVQSGSDAVL M REYT+ +F VV D + V G +
Sbjct: 378 VYAFLHVPVQSGSDAVLDCMKREYTVDEFSHVVTYLQDHIPPPPLPPDATDDAVNGSGTL 437
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----------D 396
+ATDIICGFP ET+ DF +TV L++ ++FP ++I+QF+ RPG ++
Sbjct: 438 TVATDIICGFPNETEADFAETVKLVERFRFPVLYINQFFARPGTPAASMIRKATTAEVKK 497
Query: 397 STELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESY 452
T L LF YK LV++ G TK + LV E Y
Sbjct: 498 RTRRLHDLFRAYKPYEGRQGSLVRVLVTETSHDGRFWVGHTKAYEQVLVPKIPEVY 553
>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
Length = 810
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 199/484 (41%), Positives = 268/484 (55%), Gaps = 106/484 (21%)
Query: 25 NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA 84
+ V V ++ KP ++S+ LS +P ++++T+GC+HN SDSEYM G L
Sbjct: 17 STVLVKTRFRNKKP-----NISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVK 71
Query: 85 FGYALT--------------------------------------------------DNSE 94
+GY +T D +
Sbjct: 72 YGYRVTLDGSQITNGCESEANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKK 131
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
AD+W++N+CTVK P++ + + K +V +GCVPQ L+GVS++GV Q
Sbjct: 132 NADVWVLNSCTVKGPAEDHFRNAVLEGIKLGKRVVASGCVPQSRPGADYLKGVSVIGVHQ 191
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLP----ALDLPKVRRNKFVEILPINVGCLGACTYCK 210
IDR+VEVVEETL+ H ALDLPK+RRN +EIL I+ GCL ACTYCK
Sbjct: 192 IDRIVEVVEETLQESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCK 251
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------------- 256
TK ARG L SY +E L+ R + +GVKE+WL+SED GAYGRD+
Sbjct: 252 TKQARGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAYGRDLDRTTSSLICPGLSEK 311
Query: 257 ----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
+ L LL +V +P MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PV
Sbjct: 312 WSHHITLADLLAGLVPIIP--AGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPV 369
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIE------LVPG-----------MQIATDIICG 355
QSGSDAVL AM REYT+ +F +VVD L++ L PG + IATD+ICG
Sbjct: 370 QSGSDAVLDAMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICG 429
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----DSTELLSL------LF 405
FP ET+ DFN+TV LI++Y+FP +HI+QF+PRPG N+ +S+E+ S LF
Sbjct: 430 FPTETNNDFNETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLF 489
Query: 406 SNYK 409
+Y+
Sbjct: 490 RSYR 493
>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
Length = 558
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/257 (68%), Positives = 202/257 (78%), Gaps = 28/257 (10%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINTCTVK+PSQSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 235 ADGVKEVWLSSEDTGAY 251
++GV+E+WLSSEDTGAY
Sbjct: 221 SEGVREIWLSSEDTGAY 237
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/68 (88%), Positives = 65/68 (95%)
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y FPQVHI
Sbjct: 253 AMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHI 312
Query: 382 SQFYPRPG 389
SQFYPRPG
Sbjct: 313 SQFYPRPG 320
>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Ornithorhynchus anatinus]
Length = 448
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 175/305 (57%), Positives = 222/305 (72%), Gaps = 18/305 (5%)
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K + K +V+AGCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60
Query: 180 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 61 NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
+ +A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDI
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS---------TELLSL 403
ICGFPGETDEDF TV L+++Y+FP + I+QFYPRPG + T+ LS
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKMQQVPAQVKKQRTKELSQ 298
Query: 404 LFSNY 408
LF +Y
Sbjct: 299 LFHSY 303
>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
Y486]
Length = 514
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 264/431 (61%), Gaps = 26/431 (6%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
+HD + + + + + + T + EYMAG L GY++TD E AD +
Sbjct: 10 MHDGDIEDILCNNATLNVSSSRIVNTLNTRQRRRLPEYMAGLLVQSGYSVTDEFEHADAY 69
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+N+CTVK+PS+ +++ + + KPLVVAGCVPQ K+ VSI+GV+ IDRV
Sbjct: 70 LLNSCTVKNPSEEHFVSMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVC 129
Query: 160 EVVEETLKGHEVRLL----HRKK------------LPALDLPKVRRNKFVEILPINVGCL 203
VV E L+G+ VRL+ H++ LPALDLPKVR N+++EI+PI+VGCL
Sbjct: 130 YVVHEALQGNCVRLIGLSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCL 189
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
CTYCKTK ARG L SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++ LL
Sbjct: 190 NNCTYCKTKQARGDLRSYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLL 249
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
A+ AEL MLR+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+AM
Sbjct: 250 RAVAAELSGK-DVMLRVGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILNAM 308
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
REYT+ +F V+ + VP + ++TDIIC FPGE + ++ +T++L + F ++I++
Sbjct: 309 LREYTVEEFCLCVEAIRSAVPRVTLSTDIICAFPGEGESEWRETMDLCRRINFEIINITR 368
Query: 384 FYPR---PGIQFLNL------DSTELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLF 434
FYPR P + T L+ F++Y+ ++ + ++ ++ L
Sbjct: 369 FYPRRNTPAAAMKQIPTNIAKSRTTELTNFFNSYRTYDSMVGEVHRITLLETAHDKHHLV 428
Query: 435 GMTKQFHLYLV 445
G TK + LV
Sbjct: 429 GHTKNYVQVLV 439
>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
Length = 817
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/391 (44%), Positives = 242/391 (61%), Gaps = 32/391 (8%)
Query: 67 GCSHN--QSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
GC+ N +SD + AG + +L N + + IN +K + S D I
Sbjct: 405 GCATNNDKSDPKTKAGCCNGENESLVSNVKNK-VEGINNEIIKKRTNSGKDIKI------ 457
Query: 125 KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALD 183
+V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+
Sbjct: 458 ----IVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLN 513
Query: 184 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV-IADGVKEVW 242
LPK+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+W
Sbjct: 514 LPKIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIW 573
Query: 243 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 302
L+SED+GAYG D+ N+ LL I+ E D M+RIGMTNPP+IL+H+K+I ++L+H
Sbjct: 574 LTSEDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHK 632
Query: 303 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 362
+Y F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++
Sbjct: 633 NMYEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESEN 692
Query: 363 DFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD----------STELLSLLFS---NYK 409
D +TVNLIK+YKFP ++ISQFYPR G N+ S E+ S NYK
Sbjct: 693 DHLETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYK 752
Query: 410 FTVMLISILVKLHYFSLDDQRNVLFGMTKQF 440
F L + + + + + + G TKQ+
Sbjct: 753 F---LQDTIQNVLFTEISSKSEHIIGHTKQY 780
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P IY K+FGC+HN SDSE+M G LS +G+ N E+ DI ++N+CTVK+PS+ +M
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307
Query: 116 TLI 118
T+I
Sbjct: 308 TII 310
>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
Length = 784
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/363 (45%), Positives = 232/363 (63%), Gaps = 29/363 (7%)
Query: 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV 152
+E+ I IN +K + S D ++V GCVPQ D+K E VS+VGV
Sbjct: 399 NEKNKIEGINNEIIKKRTSSGKDI----------KIIVCGCVPQAENDMKIFENVSLVGV 448
Query: 153 QQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211
ID++V+ VE + G+ V+ L + KK+ +L+LPK+R+NKF+EI+ IN GCLG CTYCKT
Sbjct: 449 NNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLPKIRKNKFIEIININNGCLGNCTYCKT 508
Query: 212 KHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
K ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ LL I+ +
Sbjct: 509 KFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLTSEDSGAYGIDLNTNIVNLLKEIL-DY 567
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL MNREY +
Sbjct: 568 VQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKDMNREYKIE 627
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390
DF +VD L + VP M IATDIICGFP E++ D +TVNLIK+YKFP ++ISQFYPR G
Sbjct: 628 DFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLIKKYKFPILNISQFYPRRGT 687
Query: 391 QFLNLD----------STELLSLLFS---NYKFTVMLISILVKLHYFSLDDQRNVLFGMT 437
N+ S E+ S NYKF L + + K+ + + + + G T
Sbjct: 688 VAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKF---LQNTIQKVLFTEISSKSEHIIGHT 744
Query: 438 KQF 440
KQ+
Sbjct: 745 KQY 747
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IP IY K+FGC+HN SDSE+M G LS +G+ N ++ DI ++N+CTVK+PS+ +M
Sbjct: 216 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 275
Query: 115 DTLI 118
T+I
Sbjct: 276 KTII 279
>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 867
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 217/326 (66%), Gaps = 16/326 (4%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 374 YKFPQVHISQFYPRPGI----------QFLNLDSTELLSLLFSNYKFTVMLISILVKLHY 423
+KFP V+ISQFYPRPG Q + S E ++ LF +Y ++ + +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSRE-VTALFESYTCYDWMLHTTQMVWF 806
Query: 424 FSLDDQRNVLFGMTKQFHLYLVVTHD 449
S ++ + G TKQ+ L D
Sbjct: 807 SSTSEKSDHTVGQTKQYVKVLTPRDD 832
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334
Query: 115 DTLI 118
++I
Sbjct: 335 YSVI 338
>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 867
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 217/326 (66%), Gaps = 16/326 (4%)
Query: 137 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 196
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 257 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 374 YKFPQVHISQFYPRPGI----------QFLNLDSTELLSLLFSNYKFTVMLISILVKLHY 423
+KFP V+ISQFYPRPG Q + S E ++ LF +Y ++ + +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSRE-VTALFESYTCYDWMLHTTQMVWF 806
Query: 424 FSLDDQRNVLFGMTKQFHLYLVVTHD 449
S ++ + G TKQ+ L D
Sbjct: 807 SSTSEKSDHTVGQTKQYVKVLTPRDD 832
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+CTVKSPS+ A+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINSCTVKSPSEFAL 334
Query: 115 DTLI 118
++I
Sbjct: 335 YSVI 338
>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
Length = 686
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/302 (55%), Positives = 200/302 (66%), Gaps = 35/302 (11%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---MGTLIRKGKAASIPLVDSWMRSSGFKRSRS---- 54
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ V ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACT
Sbjct: 55 ----CQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++ V R++TV+++G RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTPVQRLKTVVSEG---------------RDIGANIPALLRALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
A LP N P + HL HPCVYSFLHV VQSG D+VL M REY
Sbjct: 156 AVLP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T S+FR +VDTL LVP + IATDIICGFPGET EDF++ + LI+E FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIRECTFPQVHISQFYPR 266
Query: 388 PG 389
PG
Sbjct: 267 PG 268
>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
Length = 863
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/324 (50%), Positives = 215/324 (66%), Gaps = 16/324 (4%)
Query: 139 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 198
RDL +L SIVGV IDR+VE VEE LKG+ +RL +K+LP+LDLPK+RRN VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565
Query: 199 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 258
+ GCLG+CTYCKTKHARG LGSY E++ R+ + DGVK++WL+SED+GAYG D +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625
Query: 259 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685
Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
S+ VL AMNREYT F VV+TL++ P M IATDIICGFPGET+ED +T+ +IK++K
Sbjct: 686 SNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFK 745
Query: 376 FPQVHISQFYPRPGI----------QFLNLDSTELLSLLFSNYKFTVMLISILVKLHYFS 425
FP V+ISQFYPRPG Q + S E ++ LF +Y ++ + +
Sbjct: 746 FPVVNISQFYPRPGTPAASMKQLPSQIVKRRSRE-VTALFESYTCYDWMLHTTQMVWFTG 804
Query: 426 LDDQRNVLFGMTKQFHLYLVVTHD 449
++ + G TKQ+ L D
Sbjct: 805 TSEKSHHTVGQTKQYVKVLTPRDD 828
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 56 PGTE-TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
PG + IY+KTFGC+HNQSDSEYM G L A GY EEAD+ LIN+CTVKSPS+ A+
Sbjct: 268 PGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINSCTVKSPSEFAL 327
Query: 115 DTLI 118
++I
Sbjct: 328 YSVI 331
>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
Length = 465
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/335 (45%), Positives = 222/335 (66%), Gaps = 3/335 (0%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T+Y+ TFGCSHN SD E M G L+ GY +T EEAD+W+INTCTV+ S +
Sbjct: 33 PDAKTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFR 92
Query: 116 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
TL + K K LVVAGC+ + L E + +GV+QI ++ E V+ +
Sbjct: 93 TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152
Query: 175 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G+ E+WL+SEDTGAYG D +L LL+ I +E+ D + M++IGMTNPPF+ L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEVE-DSNVMVKIGMTNPPFLKPMLE 271
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++ +L H YS+LH+PVQSGSDAVL MNR+Y +SDFR + L + VPG+ ++TDII
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQHVPGITLSTDII 331
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GFP E+ ED +T+ L+++ VH S++YPRP
Sbjct: 332 VGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRP 366
>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 750
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 156/356 (43%), Positives = 229/356 (64%), Gaps = 19/356 (5%)
Query: 100 LINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 159
L+ +VK + + IAK ++V GCVPQ +D++ E VS+VGV ID++V
Sbjct: 362 LVKRASVKQMEKEGVKGAIAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIV 421
Query: 160 EVVEETLKGHEVRLL-HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
+VVE + G+ VR L H KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L
Sbjct: 422 DVVENVINGYNVRYLKHSKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDL 481
Query: 219 GSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
SY + ++ R++ V + +KE+WL+SEDTGAYG D+ N+ LL I+ + + M
Sbjct: 482 ASYNIPDIINRIKHVCNEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVM 540
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+
Sbjct: 541 IRLGMTNPPYILKHIKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVE 600
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG-------- 389
L + VP + IATDIICGFP E ++D +TV+L+K+Y+FP ++ISQFYPR G
Sbjct: 601 NLRKDVPNITIATDIICGFPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGMKK 660
Query: 390 --IQFLNLDSTELLSLLFS---NYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQF 440
+ + S E+ S NYKF L ++ + + + + L G TKQ+
Sbjct: 661 INTKIVKKRSREVTDAFLSYTNNYKF---LEGTTQRVLFTEVSTKSDDLIGHTKQY 713
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 208 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 267
Query: 115 DTLI 118
T+I
Sbjct: 268 KTII 271
>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
Length = 432
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 211/294 (71%), Gaps = 14/294 (4%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + AL LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R +GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLTDMKREYSRRHFEQIADYMIEHVPNIYIATDMILAFPTETLEDFEES 238
Query: 368 VNLIKEYKFPQVHISQFYPR---PGIQFLNLDSTE------LLSLLFSNY-KFT 411
++L+++YKFP + I+Q+YPR P + +D+ E +S LF +Y +FT
Sbjct: 239 MDLVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRFT 292
>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
Length = 438
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 209/335 (62%), Gaps = 8/335 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFP ETDED +T+ I+++KFP V+ISQ Y RPG
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPG 340
>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
KU27]
Length = 438
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/335 (47%), Positives = 209/335 (62%), Gaps = 8/335 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + T S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS ++L AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSILDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFP ETDED +T+ I+++KFP V+ISQ Y RPG
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPG 340
>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
Length = 768
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 229/361 (63%), Gaps = 19/361 (5%)
Query: 95 EADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 154
+ D L+ VK + A+ A ++V GCVPQ +D++ E VS+VGV
Sbjct: 375 KGDSGLVKREAVKKTEKEAVKGAAATAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVSN 434
Query: 155 IDRVVEVVEETLKGHEVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
ID++V+VVE + G+ VR L + KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK
Sbjct: 435 IDKIVDVVENVINGYNVRYLKQGKKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKF 494
Query: 214 ARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG L SY + ++ R++ V ++ +KE+WL+SEDTGAYG D+ N+ LL I+ +
Sbjct: 495 ARGDLASYNIPDIINRIKHVCSEENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS- 553
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
+ M+R+GMTNPP+IL+H+K+I +L+H +Y F+H+PVQSGS+ VL MNREY + DF
Sbjct: 554 NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYQIEDF 613
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG--- 389
+V+ L + VP + IATDIICGFP E + D +TV+L+K+Y+FP ++ISQFYPR G
Sbjct: 614 IYLVENLRKDVPNITIATDIICGFPYEMENDHVETVDLVKKYQFPILNISQFYPRRGTVA 673
Query: 390 -------IQFLNLDSTELLSLLFS---NYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQ 439
+ + S E+ S NYKF L ++ + + + + L G TKQ
Sbjct: 674 YGMKKINTKIVKKRSREVTDAFLSYTNNYKF---LEGTTQRVLFTEVSTKSDDLIGHTKQ 730
Query: 440 F 440
+
Sbjct: 731 Y 731
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 229 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 288
Query: 115 DTLI 118
T+I
Sbjct: 289 KTII 292
>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
Length = 438
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 213/336 (63%), Gaps = 10/336 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE-----EADIWLINTCTVKSPSQSAM 114
TI T+GCSHN SDSE M L GY + D+SE + +IN+CTVK+PSQ A+
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKI-DSSETPISSKYKAVVINSCTVKNPSQQAI 67
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
+ + KC+ A PLV+AGCVPQ + + + SIVGV Q+ ++ E VE+
Sbjct: 68 EVVQKKCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSY 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+
Sbjct: 128 LERGALVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHS 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I +GVKE+ L+ ED GAYG DI P +L I + +G MLRIGM NPP+I+++ K
Sbjct: 187 IDEGVKEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFK 244
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EI +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDII
Sbjct: 245 EIVNILLRPCCFKFLHIPIQSGSSSVLEAMKRKYTREEFDDVCNRLRISVPGISIATDII 304
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
CGFP ETDED +T+ I++++FP V+ISQ Y RPG
Sbjct: 305 CGFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPG 340
>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
nuttalli P19]
Length = 438
Score = 304 bits (779), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 159/335 (47%), Positives = 209/335 (62%), Gaps = 8/335 (2%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS----EEADIWLINTCTVKSPSQSAMD 115
TI T+GCSHN SDSE M L GY + +S + +IN+CTVK+PSQ A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 116 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFDE 245
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFP ETDED +T+ I+++KFP V+ISQ Y RPG
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPG 340
>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 860
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 216/328 (65%), Gaps = 19/328 (5%)
Query: 128 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 186
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ V+ L KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558
Query: 187 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 245
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + + R+ V + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618
Query: 246 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 305
EDTGAYG DI ++ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
Query: 306 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 365
F+H+PVQSGS+ VL MNREYT+ DF +V+ L + VP + I+TDIICGFP E+++D
Sbjct: 678 EFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYVPNITISTDIICGFPYESEQDHQ 737
Query: 366 QTVNLIKEYKFPQVHISQFYPRPGIQFLNL-------------DSTELLSLLFSNYKFTV 412
TV+LIK ++FP ++ISQFYPR G N+ D TE NYKF
Sbjct: 738 NTVHLIKNFQFPILNISQFYPRRGTVAYNMKKINTKIVKKRSRDVTEAFLSYEHNYKF-- 795
Query: 413 MLISILVKLHYFSLDDQRNVLFGMTKQF 440
L + + ++ + + + + G TKQ+
Sbjct: 796 -LQNTIQQVLFTEISSKSEHIIGHTKQY 822
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L+ +G+ EE DI ++N+CTVK+PS+ +M
Sbjct: 239 LPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESM 298
Query: 115 DTLI 118
T+I
Sbjct: 299 KTII 302
>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
Length = 425
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 207/290 (71%), Gaps = 13/290 (4%)
Query: 130 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 188
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 189 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 247
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
GA+GRDIG+ LP LL +V ++ PDGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELV-KVIPDGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 368 VNLIKEYKFPQVHISQFYPR---PGIQFLNLDSTE------LLSLLFSNY 408
+ L+++YKFP + I+Q+YPR P + +D+ E +S LF +Y
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSY 288
>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
grunniens mutus]
Length = 302
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/246 (58%), Positives = 187/246 (76%), Gaps = 9/246 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 288 ILEHLK 293
ILEHL+
Sbjct: 297 ILEHLE 302
>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
Length = 799
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 223/338 (65%), Gaps = 24/338 (7%)
Query: 123 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
SAK P ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L +
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548
Query: 237 -GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDI 607
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 667
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG----------IQFLNLDSTELLSLLF 405
FP E ++D +TV+L+K+Y+FP ++ISQFYPR G + + S E+
Sbjct: 668 FPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 727
Query: 406 S---NYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQF 440
S NYKF L ++ + + + L G TKQ+
Sbjct: 728 SYTNNYKF---LEGTTQRVLFTEVSTKSEDLIGHTKQY 762
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN+CTVK+PS+ +M
Sbjct: 252 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 311
Query: 115 DTLI 118
T+I
Sbjct: 312 KTII 315
>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
Length = 613
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 199/301 (66%), Gaps = 35/301 (11%)
Query: 88 ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGV 147
A++D+ + AD+WLINTCTVK+P+ M+TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPT---METLIRKGKAASIPLVDSWMRSSGFKRSRS---- 54
Query: 148 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
Q+ ETLKGHE LL R LP+LDLPKV +NKFVEI+PINVGCLGACT
Sbjct: 55 ----CQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKVCKNKFVEIIPINVGCLGACT 110
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YCKTKHARGHLGSYTV++LV R++TV+++G RDIG N+P LL A+V
Sbjct: 111 YCKTKHARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLCALV 155
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
A LP N P + HL HPCVYSFLHV VQSG D+VL M REY
Sbjct: 156 AALP-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREY 206
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T S+FR +VDTL LVP + IATD+ICGFPGET EDF++ + LI+EY FPQVHISQFYPR
Sbjct: 207 TFSEFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDRIMELIREYTFPQVHISQFYPR 266
Query: 388 P 388
P
Sbjct: 267 P 267
>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
Length = 1477
Score = 298 bits (762), Expect = 5e-78, Method: Composition-based stats.
Identities = 143/236 (60%), Positives = 174/236 (73%), Gaps = 9/236 (3%)
Query: 161 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
VVEETLKG+ V+LL KK L LPKVRRN +EI+ IN GCL +CTYCKTKH
Sbjct: 15 VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARG L SY ++ +V R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P
Sbjct: 75 ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFC 192
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
VVDTL VP IATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPG
Sbjct: 193 KVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPG 248
>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
Length = 354
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/258 (55%), Positives = 182/258 (70%), Gaps = 18/258 (6%)
Query: 168 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
GH VRL +KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGS
Sbjct: 1 GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 280
Y + +V R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+
Sbjct: 61 YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLK 178
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----- 395
E VPG+ IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPG +
Sbjct: 179 ERVPGVTIATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPA 238
Query: 396 ----DSTELLSLLFSNYK 409
T+ +S LF +Y+
Sbjct: 239 QLVKQRTKKISELFHSYR 256
>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
Length = 240
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/240 (57%), Positives = 186/240 (77%), Gaps = 3/240 (1%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A +W++N+CTVK+PS++ ++ + + + K ++VAGCV Q +L+ L+G+SIVGV+
Sbjct: 1 EDASLWILNSCTVKTPSETQLENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVK 60
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKF+EIL I+ GCL CTYCKTK
Sbjct: 61 QIECVTQAVEETLKGNCVRFLSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTK 120
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P
Sbjct: 121 SARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIP 179
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF
Sbjct: 180 EG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDF 238
>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Papio anubis]
Length = 629
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/224 (59%), Positives = 170/224 (75%), Gaps = 11/224 (4%)
Query: 194 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 253
EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318
Query: 254 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
DIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
S SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++E
Sbjct: 377 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQETVKLVEE 436
Query: 374 YKFPQVHISQFYPRPGIQFLNLDS---------TELLSLLFSNY 408
YKFP + I+QFYPRPG ++ T+ LS +F +Y
Sbjct: 437 YKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSY 480
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 89/117 (76%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K V
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKVKRV 176
>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
Length = 441
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/330 (44%), Positives = 208/330 (63%), Gaps = 8/330 (2%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIW--LINTCTVKSPSQSAMDTLIAK 120
TFGCSHN SDSE M L+ GY L D+ E + ++N+CTVK+PSQ +++ + K
Sbjct: 16 TFGCSHNVSDSEVMQKDLTEAGYILDKADSPLEGNYTAVVVNSCTVKNPSQQSIEQIKKK 75
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
C+ P+V+AGCVPQ + K + SIVGV Q+ ++ + VE ++G L R L
Sbjct: 76 CEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGATYLERGPL 135
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+D + + + ++I+ GC ACTYCKTKHARG L SY + ++ R++ I +GVK
Sbjct: 136 VDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKKSINEGVK 194
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+ ED GAYG DIG P +L + + +G M+RIGM NPP+I+++ EI EV
Sbjct: 195 ELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYFDEIVEVF 252
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ CVY F+H+P+QSGS VL AM R+YT +F V L + +P + IATDIICGFP E
Sbjct: 253 KRKCVYKFIHIPIQSGSTQVLEAMKRKYTREEFDDVCARLRKCIPEITIATDIICGFPTE 312
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDED T++ +K ++FP V+ISQ RPG
Sbjct: 313 TDEDHKMTLDCLKVHQFPIVNISQMCIRPG 342
>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
Length = 353
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/237 (60%), Positives = 165/237 (69%), Gaps = 24/237 (10%)
Query: 153 QQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
Q+ ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTK
Sbjct: 13 QRHRSAANTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTK 72
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 272
HARGHLGSYTV++LV R++TV+++G RDIG N+P LL A+VA LP
Sbjct: 73 HARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLRALVAALPH 117
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
N P + HL HPCVYSFLHV VQSG D+VL M REYT S+F
Sbjct: 118 RQKY-------NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEF 168
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
R +VDTL LVP + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPG
Sbjct: 169 RKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPG 225
>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
Length = 425
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 202/332 (60%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MAG L + GY + + E ADI ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D + +++GV+ IDR+V+ VE L+G + V ++
Sbjct: 64 LLDRGKKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL CTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 124 NLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V+ P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F +++ LIK K +V++S++ PRPG
Sbjct: 301 GESEEAFQRSLELIKRIKPDKVNVSRYSPRPG 332
>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 432
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 204/332 (61%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 11 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 70
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 71 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 130
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 131 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 190
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 191 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 247
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F ++V LIK + +V++S++ PRPG
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPG 339
>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 425
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 204/332 (61%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N+C VK P++ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 64 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F ++V LIK + +V++S++ PRPG
Sbjct: 301 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPG 332
>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
Length = 425
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 202/332 (60%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N++D E MA L G+ + + +E +I ++N+C VK P++ + I +
Sbjct: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++
Sbjct: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V + P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE DE F ++V LI+ + +V++S++ PRPG
Sbjct: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPG 332
>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
Length = 424
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 208/329 (63%), Gaps = 4/329 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P+++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPTENHMRKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
A K ++V GC+P + + + +I+GV+ I+R+ E +E +G ++ + ++ +
Sbjct: 62 LLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVDVEQRGID 121
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V V+ +A G KE
Sbjct: 122 KLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEALAKGYKE 181
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ LSSEDTG YG DIG NL LL+ + + +G +R+GM NP +++ L E+ + +
Sbjct: 182 IQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLDELIDAYK 238
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+Y FLH+PVQSG + +L M R YT+ DF T+V + P + + TDII GFPGE+
Sbjct: 239 DEKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAFRKEFPELNLNTDIIVGFPGES 298
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+E F TV LIK K ++++S+F PRPG
Sbjct: 299 EEAFQNTVELIKRVKPDKINVSRFSPRPG 327
>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
Length = 429
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 205/332 (61%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N++D E MA L G+ + + +E++I ++N+C VK P++ + I +
Sbjct: 8 VYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIRE 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
K ++V GC+P + ++ + +++GV+ IDR+V+ VE ++G + V ++
Sbjct: 68 LLDEGKKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKR 127
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LDLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 128 NLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQG 187
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 188 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIE 244
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F +V+ + P + + TDII GFP
Sbjct: 245 AYQDDKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAFRKKFPDLNLHTDIIVGFP 304
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F ++V LIK K +V++S++ PRPG
Sbjct: 305 GESEEAFQKSVELIKRIKPDKVNVSRYSPRPG 336
>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
Length = 316
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 155/202 (76%), Gaps = 5/202 (2%)
Query: 188 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 247
RRN V I P N CL CTYCKTKHARG LGSY E +V R R +GV E+WL+SED
Sbjct: 22 RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78
Query: 248 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 307
TGAYG+DIGV LP LL +V E+ P+G MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79 TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136
Query: 308 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 367
LHVPVQ+ SD+VL M REY LSDF+ VVD L E VP + IATD+ICGFP ET EDF +T
Sbjct: 137 LHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEET 196
Query: 368 VNLIKEYKFPQVHISQFYPRPG 389
+ L++EYKFP + I+QF+PRPG
Sbjct: 197 LQLVEEYKFPSLFINQFFPRPG 218
>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
Length = 422
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 231/384 (60%), Gaps = 23/384 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++SEE+D+ ++ TC+VK + + M I +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSEESDLNIVVTCSVKDATANKM---IHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TL+G + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKEIALEDS 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEIDEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+WL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ E
Sbjct: 181 CKEIWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP
Sbjct: 238 SYENDKVFKFLHIPVQSGSDKVLQDMKRGHTAGTFREIVKKAKERFPNFTISTDIIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVMLISI 417
ET EDF +TV L+ E + V++S++ RPG + + ++ + + + I
Sbjct: 298 SETREDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKE-------I 350
Query: 418 LVKLHYFSLDDQR-------NVLF 434
+++ SLD+ + NVLF
Sbjct: 351 FEQINKISLDNNKKWIGWKGNVLF 374
>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
KOD1]
Length = 427
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 203/332 (61%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GC+ N++D E M L GY L ++ E AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + D+ + ++GV+ IDR+ E ++ +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVSVEGWKER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
K+ L+LP++ ++ V ++PI+ GCL ACTYC T+ ARG L SY E ++ V+ +A G
Sbjct: 124 KVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
V + P VY FLH+PVQSG + VL M R YT+ +F +V +PG+ + TDII GFP
Sbjct: 241 VYQDPKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEFRRKIPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE +E F TV L+K + ++++S++ PRPG
Sbjct: 301 GEGEEAFQNTVELVKRVRPDKINVSRYSPRPG 332
>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
Length = 422
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 217/345 (62%), Gaps = 10/345 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ LTDNSEE+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLILNGGHTLTDNSEESDLNIVVTCSVKDSTANKMMYRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ ++ E E S++G + + ++V+ TL G + L
Sbjct: 64 LKS--KPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 122 LSKVGLPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ +
Sbjct: 182 KEVWLTSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLH+PVQSGSD VL+ M R +T +R +V + E I+TDII GFP
Sbjct: 239 YDNDKVFKFLHIPVQSGSDKVLNDMKRGHTSKTYREIVSKIKERFVDFTISTDIIIGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QFLNLDSTEL 400
ET+E+F +T++L+ E K V++S++ RPG ++ +D+ E+
Sbjct: 299 ETEEEFQKTISLLDETKPDVVNLSKYSARPGTEAAEWEQIDAAEV 343
>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
Length = 428
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 200/332 (60%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GC+ N++D E+MAG L G+ + D EEA+ ++NTC VK P++ M I +
Sbjct: 4 VHIENYGCARNRADGEFMAGILMLAGHEIVDTIEEAEYVVVNTCAVKDPTEVKMARRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL---HRK 177
A K ++V GC+P + + + +++GV+ IDR+ +E +G ++ + ++
Sbjct: 64 LLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIISVPDWRKR 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ + ++PI GCL ACTYC T+ ARG L SY E +V V+ I G
Sbjct: 124 NLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWVKWAIERG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+WLS+EDTG YG DIG NL LL+ I A DG +R+GM NP +++ L E+ E
Sbjct: 184 YREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V P + + TD+I GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVAEFRRAFPDLNLHTDVIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE +E F +TV LI+ + +V++S++ PRPG
Sbjct: 301 GEDEEAFQRTVALIERIRPDKVNVSRYSPRPG 332
>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
Length = 424
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 194/332 (58%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D E M L GY L + E+AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADGEIMEAILVRAGYELAETPEDADYVVVNTCAVKDPTEKHMKERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR+ E VE +G + V +
Sbjct: 64 LLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L+LP++ ++ ++PI GCL ACTYC T ARG L SY E +V V+ + G
Sbjct: 124 NSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWVKEALIRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL I A +G +R+GM NP ++ L E+ +
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIRILDELID 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + VL M R YT+ +F +V VPG+ + TDII GFP
Sbjct: 241 AYQSGKVYKFLHLPVQSGDNGVLRRMGRNYTVEEFEEIVGEFRRKVPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GETDE F T+ L+K K ++++S++ PRPG
Sbjct: 301 GETDEAFENTLELVKRVKPDKINVSRYSPRPG 332
>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
Length = 425
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 197/332 (59%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L + GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILVSAGYGLAETPETADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
A + ++V GC+P + D + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L L E+ +
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLRFLDELVD 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
VY F+H+PVQSG D VL M R YT+ F +V T + V + + TDII GFP
Sbjct: 241 AYTDEKVYRFIHLPVQSGDDEVLKRMGRTYTVEQFEEIVRTFRKKVRDLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GETDE F TV L++ + ++++S++ PRPG
Sbjct: 301 GETDEAFRNTVGLVERVRPDKINVSRYSPRPG 332
>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
onnurineus NA1]
Length = 425
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 198/332 (59%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHEVRLLHRK 177
+ K ++V GC+ + D+ + I+GV+ IDR+ E + E K V +
Sbjct: 64 LLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVSVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L L LP++ R+ ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + VL M R YT+ +F +V+ +PG+ + TDII GFP
Sbjct: 241 AYQDEKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEFRRKIPGLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GET+E F TV L+K + ++++S++ PRPG
Sbjct: 301 GETEEAFQNTVELVKRVRPDKINVSRYSPRPG 332
>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
Length = 422
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/334 (41%), Positives = 211/334 (63%), Gaps = 9/334 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++++GCS + +DSE ++G + G+ L ++S E+D+ ++ TC+VK + + M + +
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKM---VHR 60
Query: 121 CKSAK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
KS K KPLVVAGC+P+ ++ E E S++G + + ++V++ TLKG + L
Sbjct: 61 IKSLKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKKIALEDT 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G
Sbjct: 121 DLSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEINEG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KEVWL+S D G YG DIG +LP L+NA V+E+P + M+R+GM NP ++ +++ E
Sbjct: 181 CKEVWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRIKEKLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP
Sbjct: 238 SYDNDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKARERFPDFTISTDIIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
ET EDF +TV L+ E + V++S++ RPG +
Sbjct: 298 SETKEDFEKTVELLDETRPDVVNLSKYSARPGTE 331
>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
Length = 422
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 201/332 (60%), Gaps = 7/332 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + + + A+ ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLLKAGYEIAE-LDSAEYVVVNTCAVKDPTEKHMSKRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + D + I+GV+ IDR+VE ++ KG + V +
Sbjct: 62 LIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLISVEGWKER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ + V ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 122 SIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWVKEALAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIKILDELVE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
V + +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 VYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVKEFRKHIKDLNLNTDIIVGFP 298
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F TV L+K K ++++S+F PRPG
Sbjct: 299 GESEEAFQNTVELVKRIKPDKINVSRFSPRPG 330
>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
Length = 424
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 195/332 (58%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++ GC+ + + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLISVEGWRER 123
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L+LP++ +N ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIKFLDELVE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
R VY FLH+PVQSG D VL M R YT+ +F +V T +P + + TDII GFP
Sbjct: 241 AYRDEKVYKFLHLPVQSGDDEVLRRMGRTYTVEEFEEIVRTFRRRIPHLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GET+E F T L+K + ++++S++ PRPG
Sbjct: 301 GETEEAFQNTAELVKRVRPDKINVSRYSPRPG 332
>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 422
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/343 (39%), Positives = 208/343 (60%), Gaps = 11/343 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T ++D
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSD 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERYTDFTISTDIIVGF 296
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
P ET EDF +TV L+ E V++S++ RPG + + E
Sbjct: 297 PSETREDFEKTVELLNETSPDIVNLSKYSARPGTEAAEWEQIE 339
>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
Length = 422
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 211/345 (61%), Gaps = 10/345 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G++L DNS ++D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIQNGGHSLVDNSSDSDLNIVVTCSVKDSTANKMMHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPL+VAGC+P+ +D E + S++G + + ++V+ TL G L
Sbjct: 64 LKS--KPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQIALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +++T I +G
Sbjct: 122 LSKVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQTEIKEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DIG +LP L+NA+V E+P + M+R+GM NP ++ + + E
Sbjct: 182 KEIWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRIKERLIES 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLH+PVQ GS+ VL M R +T FR +V + I+TDII GFP
Sbjct: 239 FDNDKVFKFLHIPVQCGSNKVLHDMKRGHTEGTFREIVKKARDRFEQFTISTDIIVGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QFLNLDSTEL 400
ET+EDF +T+ L+ E K V++S++ RPG ++ LD+TE+
Sbjct: 299 ETEEDFQKTIALLDETKPDVVNLSKYSARPGTDAAEWKQLDATEI 343
>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 422
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 207/343 (60%), Gaps = 11/343 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 176
KS KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALED 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T +++
Sbjct: 120 TDLSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSE 179
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+
Sbjct: 180 GCKEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELI 236
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GF
Sbjct: 237 ESFSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERFADFTISTDIIVGF 296
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
P ET EDF +T L+ E V++S++ RPG + + E
Sbjct: 297 PSETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEWEQIE 339
>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 422
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/341 (39%), Positives = 206/341 (60%), Gaps = 7/341 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L +S E+D+ ++ TC+VK + + M I
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTLVKDSSESDLNIVVTCSVKDSTANKMMHRINS 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
KS KPLVVAGC+P+ ++ E + S++G + + ++V++ TL+G + L
Sbjct: 64 LKS--KPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + LPKVR N + I+ I GC+ CT+C+TK ++G L SY + +V +V T I++G
Sbjct: 122 LSKVGLPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG DI +LP L+NA V E+P D M+R+GM NP ++ E+ +
Sbjct: 182 KEIWLTSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
VY FLH+PVQSGS+ VL+ M R +T++ + VV E I+TDII GFP
Sbjct: 239 FDSDKVYKFLHIPVQSGSNKVLNDMKRGHTVNTVKEVVKKAKERFENFTISTDIIVGFPS 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
ET+EDF +T LI E + V++S++ RPG + D E
Sbjct: 299 ETNEDFEKTFKLINEIRPDIVNLSKYSARPGTEAAEWDQIE 339
>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
2088]
gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
2088]
Length = 427
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 208/340 (61%), Gaps = 7/340 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC++N++DS+ +AG L + D+ +EAD+ ++NTC VK P++ + I +
Sbjct: 3 VYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIRE 62
Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
++ K L+VAGC+ + LK++ S +G ++ + EVV+ + G++ ++ +
Sbjct: 63 LQNTYKSKELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGK 122
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+++PK R N + I+ I GCLG C+YC T+ ARG L SY ++S+V V+ I D
Sbjct: 123 DSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIED 182
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT AYGRDIG +LP L+N I + DG +R+GM +P + + L E+
Sbjct: 183 GCVEIQLTAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELV 239
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ +Y FLH+PVQSGSD VL MNR Y + DF+ +V + +P + IATDII GF
Sbjct: 240 DAYDSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFRKKIPEISIATDIIVGF 299
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
P E+ EDF +T L+ E K +H S++ RPG + LD
Sbjct: 300 PTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSKLD 339
>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 115/188 (61%), Positives = 143/188 (76%), Gaps = 2/188 (1%)
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 261
CL CTYCKTKHARG LGSY E +V R + +GV E+WL+SEDTGAYG+DIGV LP
Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
LL +V +P G +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 61 LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
M REY DF VV+ L + VP + IATD+ICGFP ET++DF +T++L+K+YKFP + I
Sbjct: 119 DMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFI 178
Query: 382 SQFYPRPG 389
+QFYPRPG
Sbjct: 179 NQFYPRPG 186
>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
Length = 424
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 200/332 (60%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N++D E M L G+ L + E AD ++NTC VK P++ M I +
Sbjct: 4 VHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + D + I+GV+ IDR+ E +E +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVSVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ VY FLH+PVQSG + +L M R YT+ +F+ +V + +P + + TDII GFP
Sbjct: 241 AYQDEKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAFRKKIPELNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GET+E F TV L+K K ++++S++ RPG
Sbjct: 301 GETEEAFRNTVELVKRIKPDKINVSRYSARPG 332
>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
Length = 424
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 200/332 (60%), Gaps = 6/332 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++++GCS N++D E M L GY L + ++AD ++NTC VK P++ M I +
Sbjct: 4 VYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIRE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 178
+ K ++ GC+ + + + I+GV+ IDR+ E + +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRER 123
Query: 179 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E ++ VR ++ G
Sbjct: 124 NPDKLELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRG 183
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIE 240
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V+ + +P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRKKIPDLNLNTDIIVGFP 300
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE+DE F TV L+K K ++++S++ RPG
Sbjct: 301 GESDEAFRNTVELVKRVKPDKINVSRYSARPG 332
>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
Length = 405
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 190/315 (60%), Gaps = 6/315 (1%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
MA L G+ L + +A++ ++N+C VK P++ + I + K ++V GC+P
Sbjct: 1 MAALLYLAGHELVSDENDAEVVVVNSCAVKDPTERKIARRIKELLDEGKKVIVTGCLPHV 60
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPALDLPKVRRNKFVE 194
+ D+ + +I+GV+ IDR+V+ VE L+G + V ++ L LDLP++
Sbjct: 61 NPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKLDLPRLSPRGVHF 120
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+WLS+EDTG YG D
Sbjct: 121 IVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIWLSAEDTGCYGFD 180
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
IG NL LL+ I + +G +R+GM NP +++ L E+ E + +Y FLH+PVQS
Sbjct: 181 IGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDEKIYKFLHLPVQS 237
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
G + +L M R YT+ +F +V+ P + + TDII GFPGE++E F ++V LIK
Sbjct: 238 GDNEILRKMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEEAFQKSVELIKRI 297
Query: 375 KFPQVHISQFYPRPG 389
+ +V++S++ PRPG
Sbjct: 298 RPDKVNVSRYSPRPG 312
>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
739]
Length = 424
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 197/332 (59%), Gaps = 7/332 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ N++D+E M L GY + D + AD ++NTC VK P++ M I +
Sbjct: 3 VHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMARRIKE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 177
+ K ++V GC+P + + I+GV+ IDR++ +E +G + V +
Sbjct: 62 LLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLINVEGWRER 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ L++P+V + V ++PI+ GCL ACTYC T+ ARG L SY +V V+ +A G
Sbjct: 122 SIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWVKEAVAKG 181
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVKVLDELIE 238
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 AYKDNKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREFRKHIKDLNLNTDIIVGFP 298
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GE++E F TV LIK + ++++S+F PRPG
Sbjct: 299 GESEEAFQNTVELIKRVRPDKINVSRFSPRPG 330
>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
Length = 424
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 201/335 (60%), Gaps = 11/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ +AG L G + + EEAD+ ++NTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIIAGLLEENGGKIVKSPEEADVIIMNTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE +KGH VR
Sbjct: 63 LQAQFPQKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
LP+ R N +V IL I GCLG C+YC T+ ARG L SY + L +
Sbjct: 121 GHGDEFKTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
ADG E+ L+++DT AYG+D G L L+N I + G +R+GM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLES 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I ++ VY FLH+P+QSGSD +L MNR++++ ++ +V +P + +ATDII
Sbjct: 238 IITAFKNDKVYKFLHLPLQSGSDQILEDMNRDHSVEEYLEIVKHFQTEIPELSLATDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+P E ++DF T+N+I+E + +HIS+++ RPG
Sbjct: 298 GYPTEGEDDFEGTMNVIREIRPDFLHISKYHHRPG 332
>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
Length = 418
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 194/331 (58%), Gaps = 11/331 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + D+ +AD+ ++NTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKE 62
Query: 121 CKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K L++AGC+ Q + + SIVG Q ID++VE VE +G + L K+
Sbjct: 63 LKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--IFLEESKE 120
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L P++ K + I+PI GC G C +C TK AR L SY ++V V+ + G
Sbjct: 121 LVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+++DT AYG DI NL LL I L +G+ M+RIGM P + + EI E+
Sbjct: 177 VEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQIDEILEI 233
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
++ VY FLH+PVQSG D VL MNR+YT+ ++R +V + + +P + I TDII G PG
Sbjct: 234 IKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTDIIIGHPG 293
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
E DE F T+NLIKE KF ++H++ + RP
Sbjct: 294 EDDEAFQNTINLIKEIKFERIHLAMYSIRPN 324
>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
Length = 428
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 207/343 (60%), Gaps = 11/343 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++T+GC+ NQ+DSE MAG L+ L EEAD ++NTC VK P++S + I
Sbjct: 6 VFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKVINRIKN 65
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K ++V GC+ + D K+LE + S +G Q+++ +VV+ T+ G VR
Sbjct: 66 LQKQYPDKKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREF 123
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + +PK+R++ ++ ++ I GCLGACTYC T+ ARGHL SY ++ +V R I
Sbjct: 124 GFSDEPKVCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAI 183
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G+D G L L+ + + DG +R+GM +P I L
Sbjct: 184 EDGCVEIELTAQDTSAFGKDTGEKLSDLIKEVAS---LDGDFRVRVGMMHPRNIGNDLDN 240
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + VY F+H+P+QSGSD VL M R +T+ D++ +V + + +P + IATDII
Sbjct: 241 LIEAFKMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFKQAIPDITIATDIII 300
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
G+P ET+EDF +T LI+E KF +H+S++ R G +LD+
Sbjct: 301 GYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSLDN 343
>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
Length = 425
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 214/379 (56%), Gaps = 11/379 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T GC+ NQ+DS+ MAG L L D E+AD ++NTC VK P++ + T I K
Sbjct: 3 VYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIKK 62
Query: 121 CKSA--KKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + L+++GC+ P+ D S +G +I E+V +G+ VR
Sbjct: 63 MQEQYPESKLLISGCMVEIDPEKLADA--APEASWIGPHKIKSTYEIVNSVHEGNIVRET 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
P + LPKVR N + I+ I GC G CTYC T+ ARG + SY+ E + +
Sbjct: 121 GFSSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KE+ L+++DT AYGRD G +L L+ ++++++ DG LR+GM +P I+ +
Sbjct: 181 TEGCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDP 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + + Y FLH+P+QSGSD VL MNR +T+ +++T+V E +P + I+TDII
Sbjct: 238 IIKAFKKGKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRFREEIPDISISTDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVML 414
G+P ETD+DF T+NLIKE + +HIS++ RPG L+ E ++ + +
Sbjct: 298 GYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEEIEHETMKERSKALNDLK 357
Query: 415 ISILVKLHYFSLDDQRNVL 433
+ I +K + + ++ +L
Sbjct: 358 MEIAMKKNSMMIGSKQTIL 376
>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
Length = 188
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 2/184 (1%)
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV E
Sbjct: 7 SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILEHL+E+A ++
Sbjct: 67 IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
HP VY FLHVPVQSGSD VLS M REY+ DF VVD L E VPG+ IATDIICGFP ET
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLSDMKREYSRKDFEHVVDFLRERVPGITIATDIICGFPTET 184
Query: 361 DEDF 364
+ DF
Sbjct: 185 EADF 188
>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
Length = 413
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 194/339 (57%), Gaps = 16/339 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ N+ D+ YM Q+ T+N EEAD+ +IN+C VK P+++ + I +
Sbjct: 3 VYFESYGCTLNKRDTLYMQAQIEN----TTNNLEEADVVVINSCIVKQPTETKILYRINQ 58
Query: 121 CKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K +V+ GC V + KEL+ +S+V + DR+ E +E T KG V L +KK+
Sbjct: 59 LKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEKKKI 118
Query: 180 P---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
A L K R I+ I GCL CTYC TK AR SY + + + +
Sbjct: 119 YKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEKLKQ 173
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G+K +L+ DT YG+DI +L LL ++ +G +R+GM NP F LE + E+
Sbjct: 174 GIKIFYLTGPDTATYGKDINYSLADLLKDLIE---IEGDFYIRVGMANPTFFLEQIDELI 230
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+V + ++ F H+PVQSGS+ VL MNR YT+ +++ ++ L + P TDII G+
Sbjct: 231 DVFKSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKLRKHFPLATYVTDIIVGY 290
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P ET+EDF QT+ L++E KF ++IS+F+ RPG NL
Sbjct: 291 PTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNL 329
>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 422
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 199/333 (59%), Gaps = 5/333 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++++GCS N +D+E ++G LS GY + +N ++D+ +I TCTVK P+ + M I
Sbjct: 3 VHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIKS 62
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPL++AGC+P+ D L+ + S++ + V+ + L G + + K+
Sbjct: 63 LSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESISSKR 122
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ LP++R N V I ++ GCL CT+C+ K ARG L SY +V + + DG
Sbjct: 123 SNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVIDGC 182
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+WL+S+D G YG+DI +LP LLN I+ ++ DG M+R+GM NP + E + ++
Sbjct: 183 REIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDLITS 239
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
P ++ FLH+PVQSGSD +L M R ++++DF V P + ++TDII GFP
Sbjct: 240 YMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFRNAFPNISLSTDIIVGFPD 299
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
ETD F +T++L++ F V+IS+F RPG +
Sbjct: 300 ETDLQFQETLDLVRRINFDTVNISRFGSRPGTE 332
>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
str. Marburg]
gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
marburgensis str. Marburg]
Length = 427
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 201/347 (57%), Gaps = 8/347 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG LS G +LT +EAD+ ++NTC VK P++ + I +
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLSEAGASLT-GIDEADVIILNTCYVKHPTEHKVINRIKR 64
Query: 121 CKSA--KKPLVVAGCVPQ-GSRDLKELEG-VSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K LVVAGC+ + + L+ + G S +G Q+ R EVV +G R+
Sbjct: 65 IREMYPDKGLVVAGCMVEIDPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRITGF 124
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ +P+VR N + I+ I GC G+C+YC T+ ARG + SY + +V R I
Sbjct: 125 TSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAIEA 184
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G +E+ L+++DT AYG D G L L+ I E+P G +R+GM +P +L L +
Sbjct: 185 GCREIQLTAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDGLV 241
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E R VYSFLH+PVQSGSD VL M R +T+ DFR +VD +P + IATDII G+
Sbjct: 242 EAFRSEKVYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRFRSRIPEISIATDIIVGY 301
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
P E ++DF T L++E + +H+S++ RP +LD + L
Sbjct: 302 PTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSLDEIDFREL 348
>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW97M7]
Length = 422
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 200/331 (60%), Gaps = 7/331 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS + +DSE ++G + G+ L + E+D+ LI TC+VK + + M I +
Sbjct: 4 IWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRIKQ 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+S KPLVVAGC+P+ R E + S++G I + ++V+E TL G +V L
Sbjct: 64 SQS--KPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L + +PK+R N V I+ I GC+ CT+C+TK A+G L SY + +V +V+ +ADG
Sbjct: 122 LSKVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WLSS D G YG DIG +L L+ V+++P D +R+GM NP F+ + +
Sbjct: 182 KEIWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ V+ FLHVPVQSGS+ VL+ M R +T+ F+ VV I+TDII G+P
Sbjct: 239 FENNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKFRTKFGPFTISTDIIIGYPT 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ET E+F +T+ L+KE + V++S++ RPG
Sbjct: 299 ETQENFEETIALLKETRPDIVNLSRYSQRPG 329
>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
Length = 425
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 197/335 (58%), Gaps = 7/335 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IYM+TFGC+ NQ+DS+ MAG L G + + E+AD+ +INTC VK P++ + I K
Sbjct: 3 IYMETFGCTFNQADSQIMAGLLEETGGKIVKSPEDADVIIINTCYVKQPTEQKITNRIGK 62
Query: 121 CKSA--KKPLVVAGC-VPQGSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
++ +K L++AGC V S L+++ +G ++I+ EVVE + GH R
Sbjct: 63 LQAQFPQKKLIIAGCMVDIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARETGH 122
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
LP+ R N V IL I GCLG C+YC T+ ARG L SY L +AD
Sbjct: 123 GDDIKTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAVAD 182
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT AYG+D G +L L+N I + +G +RIGM +P I L+ I
Sbjct: 183 GCVEIQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEAII 239
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++ VY FLH+P+QSGS+ +LS MNR +++ ++ +V+ +P + +ATDII G+
Sbjct: 240 TSFKNEKVYKFLHLPLQSGSNQILSDMNRGHSVEEYLEIVNHFQIEIPELSLATDIILGY 299
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
P E + DF T+ +I+E + +HIS+++ RPG +
Sbjct: 300 PTENENDFQGTMEVIREIRPDFLHISKYHHRPGTR 334
>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 454
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 202/355 (56%), Gaps = 11/355 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + SD E +AG + GY L N +EAD +I TC VK + + M I +
Sbjct: 10 VWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKR 69
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S KPLVVAGC+ + +R + SIVG IDRV + L G + LL
Sbjct: 70 LSS--KPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GS 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ + LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G
Sbjct: 127 MQKVGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGC 186
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+EVWL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E
Sbjct: 187 REVWLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEA 243
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
R V+ F+H+PVQSGSD VL M R + S F +V + IATD+I GFP
Sbjct: 244 YRDDKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPS 303
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVM 413
E++EDF+ +++L+ E + V++S++ RPG + + E LS N + VM
Sbjct: 304 ESEEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRM---EQLSKQVINERSKVM 355
>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
Length = 422
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 201/332 (60%), Gaps = 8/332 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQ+DS+ M G LS YA D++EEAD+ ++NTC V ++ + I +
Sbjct: 3 VYIETYGCTMNQADSDIMRGLLSR-EYAFADSAEEADVVIVNTCGVIGFTERKILRRIEE 61
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K ++ AGC+ + +R ++ ++V + R+ E V+ L G V +++ ++
Sbjct: 62 IKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVSRVD 120
Query: 181 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
++ V+ + + I+ I+ GCLG C+YC TK ARG L S+++E +V V+ V+ G
Sbjct: 121 KAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVVEMG 180
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+S+DTGAYG+D G LP LL I +E+ +G +R+GM NP +E L ++ E
Sbjct: 181 YKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDDLIE 237
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH+PVQSG + VL M R +T+ DF VV + + ++TD+I GFP
Sbjct: 238 AFKSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAFRKAFDDVLLSTDVIVGFP 297
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
E++E F +TV LIK K V+I++F PR G
Sbjct: 298 TESEESFEKTVELIKRVKPDIVNITRFSPREG 329
>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 424
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 204/349 (58%), Gaps = 12/349 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC+ NQ+DSE MAG L G LT ++AD+ +INTC VK P++ + I K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 65 IQETYPEKGLVVAGCMVE--IDPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+ +P + IATDII
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
G+P E EDF T +L++E K +H+S++ RP + +LD + L
Sbjct: 300 GYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFREL 348
>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 435
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/334 (36%), Positives = 197/334 (58%), Gaps = 6/334 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + E + LI TC+VK ++ M + I
Sbjct: 9 VWVEAYGCSASMADSEMISGLLKGAGYEIASKQSEGALNLIVTCSVKDTTEHRMVSRIKA 68
Query: 121 CKSAKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLVVAGC+P+ R ++ L + S++G I++ V+VV L G + L
Sbjct: 69 MSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRLVALEDSV 128
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ +++ I G
Sbjct: 129 ADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKADINAGC 188
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KEVWL+S D G YG+D+G +L LL A + +G +R+GM NP ++ E L + +V
Sbjct: 189 KEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEMLNRMVDV 245
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ ++ FLH+PV+SGSD VL M R +T F V +P M I+TD+I GFP
Sbjct: 246 FYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKTFLDAVQAFRSKIPEMTISTDVIVGFP 305
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
ET++DF +T++L++ + V+IS++ RPG +
Sbjct: 306 SETEDDFKETLDLVERAEPDIVNISRYSARPGTE 339
>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
Length = 450
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 194/334 (58%), Gaps = 6/334 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++++ +GCS + +DSE ++G L GY + N E + LI TC+VK ++ M + I
Sbjct: 27 VWIEAYGCSASMADSEMISGLLKGSGYEIASNQSEGALNLIVTCSVKDTTEHRMVSRIKA 86
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ KPLV+AGC+P+ R E S++G I+ VV L G + L
Sbjct: 87 LSRSGKPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSA 146
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ ++++ + G
Sbjct: 147 SDKINIPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGC 206
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL+S D G YG+D+G +L LLNA + +G M+R+GM NP ++ E L +
Sbjct: 207 KEIWLASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNT 263
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ + ++ FLH+PV+SGSD +L M R ++ F V T +P M I+TDII GFP
Sbjct: 264 FQENDKLFKFLHIPVESGSDRMLRKMKRGHSAKTFLDAVKTFRSKIPEMTISTDIIVGFP 323
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
ET+ DF +T+NL++ + V+IS++ RPG +
Sbjct: 324 SETESDFEETLNLVERAEPDIVNISRYGARPGTE 357
>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
Length = 425
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 197/337 (58%), Gaps = 11/337 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++TFGC+ NQ+DS+ MAG L + E+AD+ +INTC VK P++ I K
Sbjct: 3 IYIETFGCTFNQADSQIMAGLLKENQEKIVSKPEDADVIIINTCYVKHPTEQKAINRIHK 62
Query: 121 CKSA--KKPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ K L+++GC+ + D K+L+ S +G ++ E+V+ G VR +
Sbjct: 63 VQKQFPDKKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRSI 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ LPK+R N F+ I+ I GC G C+YC T+ ARG L SY E + V +
Sbjct: 121 GYGTDCKVCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEAV 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A+G E+ ++++DT AYG+D G +L L+N I +G +R+GM +P I++ +
Sbjct: 181 AEGCVEIQITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVDG 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++ VY FLH+P+QSG+D VL MNR +T++DF+ VV E +P M I+TD+I
Sbjct: 238 IIKAFKNEKVYKFLHIPIQSGNDDVLRDMNRGHTVADFKDVVSKFKENIPEMSISTDVIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
G+P E ++ F T+NL+ + + ++IS++ RPG +
Sbjct: 298 GYPTEDEDAFKDTLNLVADIRPDFINISKYGHRPGTR 334
>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
Length = 264
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 150/209 (71%), Gaps = 10/209 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+CTVKSP++
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 175 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E L+
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEELL 235
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
V+T ++ +WL + YGRDIG
Sbjct: 236 -IVQTAFRKRLR-LWLHPK-IQDYGRDIG 261
>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
Length = 421
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 206/376 (54%), Gaps = 7/376 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++ +GCS +Q+DSE ++G L G+ L + EE+D +I TC VK + + M I
Sbjct: 4 IWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIKM 63
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+PLVVAGC+P+ + G +++G I R V VVE L+G L
Sbjct: 64 L--GGRPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTD 121
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L LPKVR N+ V I+ I GCL CT+C+TK A+G LGSY + +V +VR + DG
Sbjct: 122 LTKTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGC 181
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
EVWL+S D G YG DI +LP LL+A++ +P G +R+GM NP ++ + +A+
Sbjct: 182 SEVWLTSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKS 238
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH+PVQSGS +L M R T F G I+TD+I GFPG
Sbjct: 239 FQSDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRFRSEFGGFTISTDVIVGFPG 298
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVMLISIL 418
ETD D+ T LI+E + V++S++ RPG + + ++ ++ + + + I
Sbjct: 299 ETDGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGREQVDVQTVKRRSKRMYELSCRIS 358
Query: 419 VKLHYFSLDDQRNVLF 434
+ + + + +VLF
Sbjct: 359 LDRNKEWVGWKGDVLF 374
>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
HVE10/4]
gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
HVE10/4]
Length = 421
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 208/365 (56%), Gaps = 13/365 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----DSTELLSLLFSNYKFTV 412
PGE ++ FN T+ L+KE +F ++H++ + RP + ++ DS + + +N +
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 413 MLISI 417
+ +SI
Sbjct: 355 IALSI 359
>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.14.25]
gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.S.2.15]
gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.G.57.14]
gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.N.15.51]
gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.16.27]
gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.D.8.5]
gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.S.2.15]
gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.14.25]
gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.G.57.14]
gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.N.15.51]
gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.16.27]
gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.D.8.5]
Length = 421
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 208/365 (56%), Gaps = 13/365 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----DSTELLSLLFSNYKFTV 412
PGE ++ FN T+ L+KE +F ++H++ + RP + ++ DS + + +N +
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 413 MLISI 417
+ +SI
Sbjct: 355 IALSI 359
>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 196/336 (58%), Gaps = 17/336 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GCS N+SDS+ M L G ++ EAD+ ++NTC VK+P++ M I +
Sbjct: 4 YIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRM---IQRA 60
Query: 122 KSAKK--PLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ K PLVVAGC+ QG + LK+ V +V ++ID++VE V + G L +
Sbjct: 61 RELSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEWR 118
Query: 178 KLPALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+D R+ + V I+PI GC+GACTYC T+ ARG L S+ +++ +
Sbjct: 119 ---FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFLR 175
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+WL+SEDT AYGRD+G NL L+ + ++LP G +R+GM P L L E+
Sbjct: 176 KGAVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSEL 232
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
R VY F H+PVQSGSD VL M R YT+ F ++VD + + + + IATDII G
Sbjct: 233 IGAYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIRKELSDVSIATDIIVG 292
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
FP E +EDF T+ +++ K V++S+F RPG +
Sbjct: 293 FPTEDEEDFESTLAILERLKPDVVNVSKFGARPGTK 328
>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
DSM 2375]
gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
smithii DSM 2375]
Length = 426
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 199/335 (59%), Gaps = 11/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+P E+DEDF TV+L++ K +H+S++ R G
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKG 332
>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
Length = 426
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 199/335 (59%), Gaps = 11/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NTC VK P+++ + I +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 174
K K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDE 237
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+P E+DEDF TV+L++ K +H+S++ R G
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKG 332
>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
Length = 421
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 208/365 (56%), Gaps = 13/365 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ IY++T+GC+ N++D+ M L + GY +N E ADI ++NTC V+ ++ M I
Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 119 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K LVVAGC+ + L S++G Q ++R+V++V+ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVK-----SEERKIVI 116
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R I
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAIQS 175
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G +E+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + ++
Sbjct: 176 GAREIELTGQDTAAYGLDLGGSIS-LVDVVNKVADIDGDFMIRIGMMTPEQAMRIMDDLI 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +R+P VY F+H+PVQSG D VL MNR+YT+ +++ ++ + +P + I TDII G
Sbjct: 235 EAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITTDIIVGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL----DSTELLSLLFSNYKFTV 412
PGE +E FN T+ L+KE +F ++H++ + RP + ++ DS + + +N +
Sbjct: 295 PGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIANKLYED 354
Query: 413 MLISI 417
+ +SI
Sbjct: 355 LALSI 359
>gi|388491006|gb|AFK33569.1| unknown [Lotus japonicus]
Length = 180
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/113 (92%), Positives = 109/113 (96%)
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
MLRIGMTNPPF LEHLKEIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVV
Sbjct: 1 MLRIGMTNPPFTLEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVV 60
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DTL ELVPGMQIATDIICGFPGETDEDF+QTVNLIKEYKF QVHISQFYPRPG
Sbjct: 61 DTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPG 113
>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 284
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 161/251 (64%), Gaps = 18/251 (7%)
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G CTYC TK ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ L
Sbjct: 1 GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60
Query: 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
L I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL
Sbjct: 61 LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNREY + DF +VD L + VP M IATDIICGFP E++ D +TVNL+K YKFP ++IS
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179
Query: 383 QFYPRPGIQFLNLD----------STELLSLLFS---NYKFTVMLISILVKLHYFSLDDQ 429
QFYPR G N+ S E+ S NY+F L + K+ + + +
Sbjct: 180 QFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYEF---LQDTIQKVLFTEISSK 236
Query: 430 RNVLFGMTKQF 440
+ G TKQ+
Sbjct: 237 SEHIIGHTKQY 247
>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
DSM 3091]
Length = 424
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 198/334 (59%), Gaps = 9/334 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ NQ+D++ MA L A Y + + EEAD+ ++NTC VK P++ M T I K
Sbjct: 3 IYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKMITKIRK 61
Query: 121 CKSA--KKPLVVAGC-VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
K+ K L++ GC V + L++ G +G ++D+V EVVE+ + G V +
Sbjct: 62 YKTEFPDKKLIIGGCMVEVDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGEVVHEYGK 121
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ K V IL I GC G CT+C T+ ARG L SY ++ +V + +
Sbjct: 122 TRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEEAKDAVEH 181
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ ++++DT +G D G + LLN + A +G +R+GM NP I L E+
Sbjct: 182 GCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIKNQLHEVI 238
Query: 297 EVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ +++F+H+P+QSGS VL MNR++TL +++ +++ + +P M +ATDII G
Sbjct: 239 DAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEFRKEIPQMSLATDIIVG 298
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P ET+EDFNQT+ L+KE K VHIS++ RPG
Sbjct: 299 YPTETEEDFNQTLELLKEIKPDIVHISKYMHRPG 332
>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
Length = 434
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 193/343 (56%), Gaps = 11/343 (3%)
Query: 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAG 132
SD E +AG + GY L N +EAD +I TC VK + + M I + S KPLVVAG
Sbjct: 2 SDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKRLSS--KPLVVAG 59
Query: 133 CVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN 190
C+ + +R + SIVG IDRV + L G + LL + + LPK+R N
Sbjct: 60 CMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQKVGLPKIRVN 118
Query: 191 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA 250
+ ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EVWL+S D GA
Sbjct: 119 PVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREVWLTSTDNGA 178
Query: 251 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHV 310
YGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R V+ F+H+
Sbjct: 179 YGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRDDKVFKFIHI 235
Query: 311 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 370
PVQSGSD VL M R + S F +V + IATD+I GFP E++EDF+ +++L
Sbjct: 236 PVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESEEDFDASIDL 295
Query: 371 IKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVM 413
+ E + V++S++ RPG + + E LS N + VM
Sbjct: 296 LLEVEPDIVNVSKYSARPGTEASRM---EQLSKQVINERSKVM 335
>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 423
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 130/154 (84%), Gaps = 2/154 (1%)
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61 EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICG
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG 178
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
FPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 179 FPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 212
>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
Length = 453
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 196/340 (57%), Gaps = 19/340 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +DS M+ L++ GY + D+ E+AD+ +INTCTV+ ++ M I +
Sbjct: 6 VYIETYGCALNHADSAIMSSVLASRGYTIVDSIEDADVIIINTCTVRLDTEQRMVKRIKE 65
Query: 121 C--KSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 173
K K K +V+AGC+ + L + G +V + R+ VE G E+ +
Sbjct: 66 VWRKYGKSKRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVE---SGTELLVED 122
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L RK+LP P+ ++ V + I GCL C +C TK AR +L S +E +V V+
Sbjct: 123 PLERKRLP----PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKK 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 288
++ GV E+ L+ +DT YG DI LP LL I V E P +R+GM +P
Sbjct: 179 LVEAGVVEIRLTGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQA 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L E+ +++ HPC++ FLH+PVQSG D VL M REYT+ ++R +V +PG+ I
Sbjct: 239 LPFWDELLDIMSHPCIFKFLHIPVQSGDDRVLRVMRREYTVDEYRRMVYEARSKLPGVTI 298
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
ATDII G PGE +E F TV L++E F +VH++Q+ PRP
Sbjct: 299 ATDIIVGHPGEDEEAFENTVRLVEELLFERVHLAQYTPRP 338
>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
chinensis]
Length = 494
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/153 (66%), Positives = 129/153 (84%), Gaps = 2/153 (1%)
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
GV E+WL+SEDTGAYGRD+G +LP LL +VA +P +G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP-EGA-MLRLGMTNPPYILEHLEEMA 290
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 350
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
PGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 351 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 383
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F V PK K + H S S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPRDRHF----ARKHVVPKVRKRNAQKHVQEESSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++ I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYQMTENASDADLWLLNSCTVKNPAEDHFRNAI-K 123
Query: 121 CKSA 124
C +A
Sbjct: 124 CLNA 127
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153
>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
Length = 431
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 202/348 (58%), Gaps = 14/348 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ +GCS NQ+ +E MA +++ +G+ L D+ A +INTCTVKS ++ + I++
Sbjct: 3 VHILNYGCSANQASAEIMAAKINEYGHELVDDESSAQAVVINTCTVKSTTEKKILHRISE 62
Query: 121 CKSAKKPLVVAGCVPQGS-RDLKELEG----VSIVGVQQIDRVVEVVEETLKGH---EVR 172
++ LVV GC+PQ +D+ E + + + +I ++ ++ + KG +
Sbjct: 63 IGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKDRIE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
LL L++ ++R N + I I+ GC C+YC + ARG L S+ + +V V+
Sbjct: 123 LLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDDVKK 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
I++G +EVW++S+D G YG DI +LP LLN ++ ++P +R+GM NP +L L
Sbjct: 183 AISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPE--HFKIRVGMMNPFSVLPIL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ + + +Y LH+P+QS S+ LSAMNR +++ D ++ + + TDI
Sbjct: 240 DDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDVEDIISRFRYRFGDLTLFTDI 299
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG---IQFLNLDS 397
I GFP ETD+DFN++V IKEY +++IS++ PRPG + N+DS
Sbjct: 300 IVGFPYETDDDFNKSVEWIKEYCPDKINISRYTPRPGTPAFNYRNIDS 347
>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
5348]
Length = 418
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 187/334 (55%), Gaps = 11/334 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ N+ D+ M L + + ++ E+AD+ +INTC V+ ++ M I +
Sbjct: 3 IYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRILE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVAGC+ L S++G Q I VV+ VE + LH +
Sbjct: 63 LSKTGKKLVVAGCLAGAEPGLVMSLAPQSSLIGPQSIGDVVKAVESR---ERIVSLH-GE 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
LP++ LP V + ++PI GC G+C +C TK AR L SY +V R I G
Sbjct: 119 LPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEKGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ L+ +DT AYG D+G + I L +V E+ +G M+R+GM P + L ++ +
Sbjct: 177 KEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDLLD 234
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+P VY F H+PVQSG+D VL AMNR+YTL +FR +V + + P + I TDII G P
Sbjct: 235 AWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIRKRFPLVNITTDIIVGHP 294
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GE + F T+NL+KE +F ++HI+ + RP +
Sbjct: 295 GEDENAFEDTLNLMKELRFERIHIAMYSLRPNTR 328
>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
Length = 418
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 190/335 (56%), Gaps = 13/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + + E AD+ +INTC V+ ++ M I +
Sbjct: 3 VYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIRE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LV+AGC+ L S++G Q I +V+VVE +E + K
Sbjct: 63 LSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNERVISLDSK 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P++ LP+V + + ++PI GC G C +C TK AR +L SY + ++V V+ +I+ G
Sbjct: 119 TPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVKRMISQGA 176
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT YG D+G V LP ++ VA L +G M+R+GM P + HL I
Sbjct: 177 KEIELTGQDTAVYGLDMGGKVTLPDVVKE-VASL--EGDFMIRVGMMTPEMAMRHLDSIL 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +P VY F H+PVQSG+D VL MNR+YT+ +FR +V + + + I TDII G
Sbjct: 234 EAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIRKKFRLVNITTDIIVGH 293
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
PGE D F T+NL+KE +F ++HI+ + RP +
Sbjct: 294 PGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTR 328
>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
Length = 433
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 200/351 (56%), Gaps = 18/351 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC +Q+ SE M + G+ L D + AD+ + NTCTVK ++ + I +
Sbjct: 3 VHVATYGCPSSQAASEIMMDAIKRQGHELVD-EKSADVVVFNTCTVKYTTEQKILHKIGE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEV 171
+VV+GC+P+ D L + I+GV I R+ EV++ E K G +
Sbjct: 62 LGRKGLEVVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRL 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + L+ P+ R N+ + I I+ GC C YC + ARG L S+ ++S+V VR
Sbjct: 122 EIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVR 181
Query: 232 TVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+++G +E+W++S+D YG R GV LP LL+ + + +G+ +R+GM NP +
Sbjct: 182 KAVSEGCREIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVY 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L ++ +V + +Y FLH+P+QS S+ VL MNR YT+S+ ++ + +
Sbjct: 239 PILDDLLKVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKFRSRFNDLTLV 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
TDII GFPGET++DF ++++ +K Y+ +V+IS++ PRP +++ N+DS
Sbjct: 299 TDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRNIDS 349
>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 423
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 189/328 (57%), Gaps = 6/328 (1%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KT+GC+ NQ+DS+ + L + ++ ++AD+ ++NTCTVK+P++ + L+ K
Sbjct: 4 YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63
Query: 122 KSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S K+ ++V GC+ + D+ SIV + ++ + + V T G V + +K
Sbjct: 64 ESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMSSLQKR 123
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L K R+ I P++ GC+ +C++C+TK AR L S++ + ++ V+ + G
Sbjct: 124 DRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSVKSGAV 182
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++S+D GAYG D N+ +L+ I +G +RIGM NP + ++ E A L
Sbjct: 183 EIDITSQDIGAYGADRKSNIALLMEKIS---RIEGFFKVRIGMLNPERLAGYINEFASAL 239
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ Y F H+P+QSGSD+VL +M R YT+ + VD L VPG+ I TD+I G+P E
Sbjct: 240 GNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSYVPGISIETDMIVGYPTE 299
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPR 387
TDEDF ++ ++K ++ +IS+F R
Sbjct: 300 TDEDFTNSIEVLKSFRPDVTNISRFGAR 327
>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 441
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 193/341 (56%), Gaps = 24/341 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N +D+ M LS+ GY+ T+ +EAD+ +INTCTV+ +++ M IA+
Sbjct: 6 VYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIAE 65
Query: 121 CKSAKKP----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ + LVVAGC+ R + VS V +D VE +G ++
Sbjct: 66 LAAIAEKTGARLVVAGCMASAQPYTVKRIAPKAVLVSTYNVHLVDIAVE------RGLDL 119
Query: 172 RLLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R+K L P R R K E+ PI GCLG C++C TK AR + S VE++V
Sbjct: 120 LTPPREKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVK 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
VR ++ G E+ L+ +D YG D+ LP L+ ++ +G M+RIGM +P
Sbjct: 179 LVRELVRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIE---VEGDFMVRIGMMSPD 235
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E EV RHP V+ F+H+PVQSG D VL M R YT+ ++R +V + VPG+
Sbjct: 236 QLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIRNKVPGV 295
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
IATDII G PGE +E F TV LI+E +F +VH++Q+ PR
Sbjct: 296 MIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPR 336
>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 421
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/335 (37%), Positives = 190/335 (56%), Gaps = 12/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ DS M L G+ + DN ++A+I +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKE 62
Query: 121 CKSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K LVVAGC+ + S++G Q + ++V+VVE + K +V L K
Sbjct: 63 LKKYNDKRLVVAGCLASAEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDK 121
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L PKV K + ILPI GC G C +C TK AR L SY +V VR + G
Sbjct: 122 PLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKG 177
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIA 296
E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 178 AVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGII 234
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 235 EVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGH 294
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
PGE + F T+ L+++ KF ++H++ + RP +
Sbjct: 295 PGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTR 329
>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
subterraneum]
Length = 432
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 188/333 (56%), Gaps = 11/333 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y + +GCS NQ+D E G L GY + + EAD ++ TC VK P+ M I
Sbjct: 12 QKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADRMIHRI 71
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K S L+VAGC+ G + + + V+ V R + V ++GH K
Sbjct: 72 KKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK- 128
Query: 179 LPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
L LP++R+N + I+P++ GC C++C +R SY V ++V VR + +G
Sbjct: 129 ---LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNEG 185
Query: 238 VKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
+EVWL+S+D G+YG + G NL P L+ ++ + +G RIGM NP ++ L+++
Sbjct: 186 CREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKLV 242
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ +Y F+HVPVQSGSD VL MNR +++ F VV+ P + ++TD+I G+
Sbjct: 243 KAYSGEKIYKFIHVPVQSGSDKVLKDMNRGHSVQLFYHVVEAFRRRFPSITVSTDLIVGY 302
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P ETDEDF QT+ L+++ + V++S+++PRPG
Sbjct: 303 PTETDEDFEQTLKLVEKTRPAVVNVSRYFPRPG 335
>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
Length = 435
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 198/353 (56%), Gaps = 20/353 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GH 169
++V+GC+P+ + L I+GV + R+ + +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEII 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP F NLDS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDS 351
>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
Length = 458
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 199/353 (56%), Gaps = 20/353 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASIRKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GH 169
++V+GC+P+ + L I+GV + R+ ++ +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGG 122
Query: 170 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVNEIITKFRARFEDLS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP F NLDS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDS 351
>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
Length = 423
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 195/335 (58%), Gaps = 14/335 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ NQSDS+ M G L A + L D+++EAD+ +IN+C V ++ +
Sbjct: 4 VYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKILKRAES 62
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K +V+AGC+P+ ++ E+ VS V ID VV+ V LKG + L+ R
Sbjct: 63 LKRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRT 119
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ ++ V+R + I+ I GC G C++C T+ ARG L S+ ES+V VR +
Sbjct: 120 DVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCV 179
Query: 235 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+G KE+ ++S+DTGAYG D G LP LL AI +E+ +G +R+GM NP +E L
Sbjct: 180 ENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLD 236
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
++ +Y F+H+PVQSG + VL MNR++++ DF VV + ++TD+I
Sbjct: 237 DLLNAFESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAFRRRFDDVMVSTDVI 296
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GFP ET+E F +T LIK + V+I++F RP
Sbjct: 297 VGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRP 331
>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
Length = 418
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 186/335 (55%), Gaps = 13/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + LT++ AD+ +INTCTV+ ++ M I +
Sbjct: 3 VYFETYGCTLNKGDTLTMMSLLRERKHQLTNDISSADVIVINTCTVRMETEEKMKKRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
S K LVVAGC+ L S++G Q ++ VV+ VE + R++
Sbjct: 63 LVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDSRVVEIGS 117
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LPKV + ++PI GC G C +C TK AR L SY++ ++ V+ + G
Sbjct: 118 KPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQESVRRGA 176
Query: 239 KEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ L+ +DT AYG D+G + P L+ I + +G M+R+GM P + L EI
Sbjct: 177 KEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAMRRLDEII 233
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E HP VY F H+PVQSG+D VL M R+YT+ +F+ +V + +P I TD+I G
Sbjct: 234 EAWSHPKVYKFFHIPVQSGNDRVLRLMGRKYTVEEFKALVKEIRSRIPQSNITTDVIVGH 293
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
PGE ++ F T++L++E KF ++HI+ + RP +
Sbjct: 294 PGEDEDAFKDTLDLMRELKFERIHIAMYSLRPNTR 328
>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
Length = 433
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 199/351 (56%), Gaps = 18/351 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ TFGCS NQ+ +E M + + G+ L + + AD+ ++NTCTVK ++ + I +
Sbjct: 3 VYVSTFGCSANQASAEVMMATIRSLGHELV-SEKHADVVVLNTCTVKYSTEQKILHKIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGH 169
+VVAGC+P+ + ++ I+GV I R+ EV+ +T
Sbjct: 62 LGEKGIEVVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQ 121
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + + +++P++R N + I ++ GC AC+YC + RG L S+ +S+V
Sbjct: 122 ALHVFSHEPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVED 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+R +A+G +E+WL+S+D YG DIG+ LP LL I ++P G +R+GM NP +L
Sbjct: 182 IRQGVAEGCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVL 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L+E+ + +Y +H+PVQS S+ VL MNR +++ + V+++ + + +
Sbjct: 239 PILEELLHAFENDKIYKLVHLPVQSASNDVLKRMNRFHSIEEADLVINSFRDRFDDLTLF 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
TDII GFPGE + DF T+ +K+ K +++IS++ PRP +++ N+DS
Sbjct: 299 TDIIVGFPGENEADFVTTLEWVKKQKPEKINISRYTPRPHTKALEYRNIDS 349
>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
Length = 435
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/352 (33%), Positives = 192/352 (54%), Gaps = 18/352 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS + + +E M + G+ L + + EA++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVV--------EETLKG 168
++V+GC+P Q L I+GV I R+ E++ E G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ L + L L++P+ R N + I I+ GC AC+YC KHARG L S+ E +V
Sbjct: 123 GHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVK 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R+ +ADG +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L L + + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDGLVDAFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSL 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP F NLDS
Sbjct: 300 FTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDS 351
>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
Length = 423
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 182/330 (55%), Gaps = 9/330 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY +T+GC+ ++E + +L + GY + EEAD +I TCTV+S ++ M I +
Sbjct: 3 IYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMAWRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A K L+V GC+ L ++ SIV + + E LKG + LL ++
Sbjct: 63 LCKASKKLIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P L V F ++PI GCLG CT+C TK AR L S +S++ + G
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+WL++ D AYG++IG+ LP LL ++ LP + +R+GM +P E + +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+R P V+ F H+P+QS SD VL M R YT S+F +V+ + + IATD++ GFPG
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRKAFNDPTIATDVMVGFPG 295
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
E ++DF T+ ++E F +VH++ + PRP
Sbjct: 296 EEEDDFELTLKALRELAFERVHLAAYTPRP 325
>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
Length = 418
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 191/343 (55%), Gaps = 27/343 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ L DN EEADI +INTC V+ +++ M I +
Sbjct: 5 VYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRINE 64
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH--------EVR 172
K+ K +VVAGC+P+ ++ +++ + ++ + E++ ++ H E+
Sbjct: 65 LKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEEEIN 122
Query: 173 LLHRKKL----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
KKL P+L P LPI GCLG C+YC K ARG L SY E +V
Sbjct: 123 KTLYKKLDYLKPSLITP----------LPICEGCLGNCSYCIVKIARGKLISYPREKIVN 172
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + +I GVK ++++++DT YG DIG NL LLN + +G ++R+GM + +
Sbjct: 173 KAKELINKGVKCLFITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNV 229
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L E+ E ++ V FLH+P+QSG D +L MNR YT+ +F+ +VD V +
Sbjct: 230 EPILDELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFRRKVRNLCF 289
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
TDII GFPGET+E F T+ ++KE K +H +++ R G +
Sbjct: 290 TTDIIVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTE 332
>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
6242]
gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
[Methanococcoides burtonii DSM 6242]
Length = 430
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 191/348 (54%), Gaps = 15/348 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GCS NQ+ SE M + GY L D + A++ +INTCTVK ++ + I
Sbjct: 3 VHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIED 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVR 172
+ +VV GC+PQ + L+ I+GV I ++ +V +E + K V
Sbjct: 62 LGAKGIDVVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVE 121
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L+ + L R N + I I+ GC +C YC ARG L S+ +S+V +R
Sbjct: 122 LITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRM 181
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ +G +E+WL+S+D G YG D V LP LL IVA +P G +R+GM NP + L
Sbjct: 182 AVDEGCREIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPIL 238
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ EV R +Y +H+P+QS SD VL MNR +++ + +V L E P + + TDI
Sbjct: 239 DDLIEVFRSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLREAFPDLTLFTDI 298
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDS 397
I GF E+D DFN T+ +K K +V+IS++ PRP +++ NLD+
Sbjct: 299 IVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRNLDT 346
>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
Length = 386
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 169/295 (57%), Gaps = 19/295 (6%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+AD +I TC V +++ M I + + K +VV GC+P R+L E +G+ +
Sbjct: 14 EDADKIVIGTCVVIEHTENRMLRRIKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTW 72
Query: 154 QIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 213
+ +R HE +L +K P + +V V +PI GCLG CTYC TK
Sbjct: 73 EFER----------AHE--MLDLRKSP---MDQVFLWDAVATIPIANGCLGKCTYCITKI 117
Query: 214 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 273
ARGH+ S VE ++ RV+ + G E+ LS++DT AYGRDIG NL L+N I + D
Sbjct: 118 ARGHIKSRPVEWIISRVKDALNMGAVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LD 174
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
G +RIGM P LE + E+ E + VY FLH+PVQSG D +L MNR YT DF
Sbjct: 175 GRFYVRIGMMEPRETLEIIDELIESYKSSKVYKFLHIPVQSGDDRILRRMNRGYTAEDFE 234
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ + +P + I+TD+I GFPGETDE F T+++I+ K ++I++F PRP
Sbjct: 235 RIIGEFRKKIPDITISTDVIVGFPGETDETFANTLDMIQRLKPDILNITRFSPRP 289
>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
Length = 404
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 181/328 (55%), Gaps = 23/328 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GCS N +++ M GQ A G + EEAD+ LI TC V +++ M I +
Sbjct: 3 VYLEAYGCSQNIAETN-MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEE 58
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K K +VV GC+P ++L +++ V I + E+ E L L R +
Sbjct: 59 LKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMD 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ + V +PI GCLG CTYC T+ ARG + S + E ++ V+ + E
Sbjct: 108 EVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVE 162
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 163 IRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYS 219
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+P VY FLH+PVQSG + +L MNR Y + DF +V + P M ++TDII GFPGE
Sbjct: 220 NPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGEN 279
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRP 388
DE F T+ LIKE K ++I++F PRP
Sbjct: 280 DESFENTMKLIKEIKPEILNITRFSPRP 307
>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
1633]
gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
1633]
Length = 425
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 187/336 (55%), Gaps = 16/336 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L+ G+ + D+ AD +INTCTV+ ++ M IA+
Sbjct: 3 VYLETYGCALNKSDEALMKRVLTDRGHGIVDDPTSADALVINTCTVRLDTEYRMARRIAE 62
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K + K LVVAGC+ + + K SIV Q D++ VE R++
Sbjct: 63 LYRLAKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
L + V + +P GCLG CT+C KHAR L S+ +E + V +
Sbjct: 118 LLTGLRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G E+ L+ D G YG D+ LP L+ + VAE+ +G M+R+GM NP + L
Sbjct: 178 RLGAVEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYIL 234
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ E L+H VY FLH+P+QSGS+ +L M R+YT+ ++ V+ L +PG+ IATDI
Sbjct: 235 DDLVEALQHRKVYKFLHIPLQSGSNRILKLMGRKYTVEEYIDYVEELKSKIPGISIATDI 294
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ GFP ETDEDF TV +IK+ +F +VH++ + RP
Sbjct: 295 LVGFPHETDEDFQDTVEVIKKLRFERVHLAAYSIRP 330
>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
Length = 429
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 187/343 (54%), Gaps = 27/343 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 VYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
K L+VAGC+ + + K S+V Q ++ VE LKG
Sbjct: 65 LYKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R ++ +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RDR----------NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ GV E+ L+ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VEELVGKGVVEIELTGQDTASYGLDLYGKQKLPHLLEELDR---IKGNFMIRIGMMNPDT 231
Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ E++++ +Y FLH+P+QSGSD VL M R+YT+ ++R ++ TL + +P +
Sbjct: 232 LANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDEYREIIKTLRKKIPEI 291
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDII G PGE +EDF QT+++IKE KF ++H + + RP
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPN 334
>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
Length = 406
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 20/329 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T GC+ N SDS+ + + A G + EEAD ++NTC V + +M L A
Sbjct: 3 IYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K + K +VVAGC+ L L+G+ R +++ E R+L +P
Sbjct: 61 KKYSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMP 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
A P ++ V + I GC G C+YC + RG L S VE +V ++T + G +E
Sbjct: 108 AAGRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGARE 165
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DTGAYG D G LP L+ I L +G +R+GM NP I + L ++A +
Sbjct: 166 ILLTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFN 222
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
P VY F H+PVQSGSD +L M R YT S +R +V L + VPG+ ++TD I GFP ET
Sbjct: 223 DPRVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLRQEVPGITLSTDYIVGFPTET 282
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DEDF T++ ++ + +V+I++F PRPG
Sbjct: 283 DEDFALTMDDLRSTRPLKVNITRFSPRPG 311
>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
Length = 425
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 182/333 (54%), Gaps = 14/333 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++KTFGC+ N+SDSE M L + G+ DN E AD+ ++NTCTV+ S I K
Sbjct: 4 FIKTFGCALNRSDSELMREILISRGFEEIDNLENADVIIVNTCTVRKDSDQKAIEYIEKV 63
Query: 122 KSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K +VVAGC+P L ++ + +R+V+ + +E L +
Sbjct: 64 KQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDFLGYE 118
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ ++P V+ + I+P+N GCL C +C TK AR L S + ++ ++ ++ +G
Sbjct: 119 EFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDLVENG 177
Query: 238 VKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
V E+ LSS+D YG D LP L+ I E+ G MLRI M NP + + L+
Sbjct: 178 VYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKDLENF 235
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
++ + V+ FLH+P+QSG D VL M R+Y++ D VV+ + ++IATDII G
Sbjct: 236 VKIFEYEHVFKFLHLPIQSGDDEVLKIMGRDYSIEDALYVVNEFRSRIKDLRIATDIIVG 295
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
PGE++E F T+ ++ F +VHI+Q+ PRP
Sbjct: 296 HPGESEEAFENTLKVVVSGLFDRVHIAQYTPRP 328
>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
Length = 407
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 122/338 (36%), Positives = 180/338 (53%), Gaps = 23/338 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N DS M + A G + + +EAD+ +INTC V P+ M L A
Sbjct: 3 VYIETYGCTANMGDSHRMRSSIQAAGCCVAERPDEADVIIINTCAVTEPTSRGM--LKAI 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K K ++VAGC+ L E G V G E +K +R +H K
Sbjct: 61 KKYEDKRVIVAGCMAAAQPYLLEGLGGNVECAGAPG-------AEAAMKLLGIRPVHGKP 113
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L I+ I GC+G CTYC + ARG L S S+ V+ + G
Sbjct: 114 L---------LKGKTAIISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGA 164
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE++L+++DTGAYG DIG+ LP L++ + L +G +R+GM NP I + L ++ +
Sbjct: 165 KEIFLTAQDTGAYGIDIGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRI 221
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ P VY F H+P+QSGSD +L M R YT S + +V L E +P + ++TD I GFP
Sbjct: 222 FQDPHVYKFAHIPIQSGSDRILRLMGRPYTESQYSDMVRRLRECIPDITLSTDYIVGFPE 281
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
ETD DF T+ ++ K +V+I++F PRPG +D
Sbjct: 282 ETDGDFEMTMEDLRANKPLKVNITRFSPRPGTVAAKMD 319
>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
14429]
gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
14429]
Length = 452
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 189/335 (56%), Gaps = 19/335 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ M +L + G+ T++ E AD ++NTC V+ ++ L+ +
Sbjct: 9 TFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLKRLSEE 68
Query: 125 --KKPLVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L+VAGC+ P +D+ +S G + ID EVV H K
Sbjct: 69 YPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAK 125
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVI 234
LP P++ +++V +PI VGCLG C++C TK R G + SY ++ +V + +
Sbjct: 126 YLPNY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAV 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+ G +E++L+ ++ AYGRD G +L LL I+A++ DG M+R+GM P + +
Sbjct: 183 SKGAREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDR 240
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +V++ VY F HVPVQSGSD VL M R+Y++ FR +V + P +ATDII
Sbjct: 241 LLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFRDIVKRIRNAFPDATVATDII 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GFPGETDEDF +V LI+E +V+++++ RP
Sbjct: 301 VGFPGETDEDFWASVRLIEELGIDKVNLARYSRRP 335
>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
Length = 525
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 198/402 (49%), Gaps = 61/402 (15%)
Query: 45 LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEE 95
L+ S SP + + M T GC HN ++S+ +A L G +T +++ +
Sbjct: 11 LAHAQSTSPLLTNVR-VMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARD 69
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGS-------RDLKELEGVS 148
D+ IN+CTVK+PS+ + K +V+ GCVPQ R + +
Sbjct: 70 VDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLI 129
Query: 149 IVGV---QQIDRVVEVVEETLKGHEVRLLHRKKLPALDL--------------------- 184
I GV Q + + ++ E + H + H + PAL +
Sbjct: 130 ISGVLTQQWLAALPRLLREAIDLHILNNSHLLQ-PALRMTQPSDKAGVPAAISYVTKEAT 188
Query: 185 -----------PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+
Sbjct: 189 KDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSS 248
Query: 234 IADGV-KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILE 290
+AD + +E+WL+ EDT A+GR+ +LL + + T ML+IGMT+P ++
Sbjct: 249 LADPIIRELWLTGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVIN 308
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ +R VY FLH+PVQSGSD +L+ M R Y + F L VP + + T
Sbjct: 309 QEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLCLDT 368
Query: 351 DIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPR 387
DIICGFPGETDED Q++NL + K F V+I+Q+Y R
Sbjct: 369 DIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYAR 410
>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
Length = 525
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 195/386 (50%), Gaps = 60/386 (15%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G Y +++++ D+ IN+CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----SRDLKELEG---VSIVGV---QQIDRVVEV 161
+ K +V+ GCVPQ S +L++ + I GV Q + + +
Sbjct: 86 DKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGVLTQQWLTALPGL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDFHILNTSHVLQ-PALRMTQPSSKAGVSAAISYVTKEATKDVDVEYLKCTPVHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GR+ G LL + L + T ML+IGMT+P I+ +A + VY
Sbjct: 265 LAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQSGSD +L+ M R Y + F L VP + + TDIICGFPGETDED Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDTDIICGFPGETDEDHAQ 384
Query: 367 TVNLIKEYK-----FPQVHISQFYPR 387
++NL + K F V+I+Q+Y R
Sbjct: 385 SLNLFRNLKEDAPRFQVVNITQYYAR 410
>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
Length = 429
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 27/343 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N+ D M L + G+ L + EAD +INTCTV+ ++ M I +
Sbjct: 5 IYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 169
K L++AGC+ + + K S+V Q ++ VE LKG
Sbjct: 65 LYRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLVSPQNAPKIWIAVESDGQVFLLKGE 124
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
R + + +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RNRRILGTYV----------DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ ++ GV E+ ++ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VKELVGKGVVEIEITGQDTASYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDT 231
Query: 288 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ EV+++ +Y FLH+P+QSGSD VL M R+YT+ ++R +V L + +P +
Sbjct: 232 LANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVKILRKKIPEI 291
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
IATDII G PGE +EDF QT+++IKE KF +VH + + RP
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPN 334
>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
Length = 430
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 185/346 (53%), Gaps = 28/346 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L + SI+G D V V ++ E +
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ---- 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
LD V + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 116 ----RLDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELL 401
FP ET+EDF ++NL++E K +V+I++F PRPG + L T+LL
Sbjct: 284 FPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKL--TDLL 327
>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
Length = 404
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 184/342 (53%), Gaps = 42/342 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++T+GC+ N++DS + + A G A+ + EEAD+ ++NTC V + ++M L
Sbjct: 2 TMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSM--L 59
Query: 118 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE------- 170
A + K ++VAGC+ V + R LKG+E
Sbjct: 60 RAVSRFPGKRVLVAGCL----------------AVAEPGR--------LKGYEFVDGPGS 95
Query: 171 ---VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
VR L + L + R ++I GC G C+YC + RG + S +V
Sbjct: 96 LPVVRALGLRPEAGLSIAMTGRTATIKIAE---GCNGQCSYCIVRLVRGRIRSTPAPDIV 152
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R IA+G E++L+S+D+GAYG D GV LP L+ +I A LP G+ +RIGM NP
Sbjct: 153 EAARRAIAEGASELFLTSQDSGAYGLDTGVRLPTLIRSI-ASLP--GNFKVRIGMMNPFS 209
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
I + L ++ +VL HP VY F H+PVQSGSD +L M R YT ++ ++ L VPG+
Sbjct: 210 IADILPDMVDVLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGVPGIT 269
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+TD I GFP ET+ DF T+ ++ + +V+I++F PRPG
Sbjct: 270 FSTDYIVGFPTETEADFRLTLEDLRTNRPLKVNITRFSPRPG 311
>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
Length = 415
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 190/338 (56%), Gaps = 17/338 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ +T++ EEA+I +INTC V+ +++ M I +
Sbjct: 3 VYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRINE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +V+AGC+P+ ++ +++G + ++ R E++++ ++ H +R
Sbjct: 63 LKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRMPYI 115
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG+L SY E +V + + +
Sbjct: 116 EEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKAKEL 175
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + +G ++R+GM + L
Sbjct: 176 INKGAKCLLITAQDTACYGFDIGDNLANLLNDLT---QIEGEFIMRVGMMHAKNAELILD 232
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ EV + V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 233 ELIEVYKDDKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 292
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+E F T+ ++KE K +H +++ R G +
Sbjct: 293 VGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTE 330
>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
Length = 430
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 189/341 (55%), Gaps = 28/341 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC+ N+ +SE A L G+ + + EEAD+ ++NTC V ++ + +++
Sbjct: 22 FYIETYGCAANRGNSEAFASALVEAGHRRS-SQEEADLVIVNTCAVTERTERDIRRRLSE 80
Query: 121 CKSAKKPLVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLL 174
+ + L+VAGC +P+ RDL+ E + I+ R+ E E L G
Sbjct: 81 LQGER--LIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGS----- 133
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ R+ ++ I+ GCLG+C+YC + ARG L S TV+ + VR +
Sbjct: 134 ----------GRMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRL 182
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G EV L+S+D AYG D+G +LP L++A VAE+ +G +R+GM NP + L+E
Sbjct: 183 KEGAVEVQLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEE 239
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ P VY FLH+PVQSGS VL +M R YT DF ++ L PG+ + TD+I
Sbjct: 240 LIRSYDDPKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSMAARLRAAFPGLTLYTDVIA 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
G PGE +EDF T LIK+ + +V+++ + RPG + L
Sbjct: 300 GHPGEREEDFAATEELIKKAEPDKVNVTMYSSRPGTEASRL 340
>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
IC-167]
Length = 422
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 187/335 (55%), Gaps = 16/335 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y++T+GC N++DS M L GY ++ +AD+ L+NTC V+ S+ I
Sbjct: 3 TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIE 62
Query: 120 KCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K K L+VAGC+ + S ++ IV ++ + E+++ + E RL+ R
Sbjct: 63 KYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMVR- 120
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 234
+PK + V ++PI VGCLG C+YC K+ RG +G S + + + +
Sbjct: 121 ------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAKAV 174
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
A G +E++L+ ++ AYG+D G +L LL A++ ++ +G ++R+GM P + +
Sbjct: 175 ARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMIHR 232
Query: 295 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +V+++ +Y F H+PVQSGSD VL M R+YT+ F+ V+ + IATDII
Sbjct: 233 LIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLFKREVELIRRSFRNSFIATDII 292
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
G PGE D DF ++V LI+E +VH++++ PRP
Sbjct: 293 VGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRP 327
>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
11486]
gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
11486]
Length = 427
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 190/339 (56%), Gaps = 21/339 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M L G+ + DN AD+ +INTCTV+ ++ M I+
Sbjct: 3 VYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRISS 62
Query: 121 CK----SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
+ + K L+VAGC+P Q + K S+V Q R+ VE G V L
Sbjct: 63 LRELTQARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLD 120
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
++ + L NK I PI GCL C++C TKHAR L S+TVE++V V T +
Sbjct: 121 GVRERDRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFIL 289
G E+ L+ D G YG ++ LP L+ V+ LP G +RIGM NP P IL
Sbjct: 178 RMGAVEIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPIL 234
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E + R +Y FLH+P+QSGSD VL AMNR+YT+ ++R ++ + + + + IA
Sbjct: 235 DELLEAVKSDRR--IYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEVKQKISDVSIA 292
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
TDII G P E +EDF +T+ +I+E +F +VH + + RP
Sbjct: 293 TDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRP 331
>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
Length = 442
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 196/356 (55%), Gaps = 18/356 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTCTVKSPSQSAMDTLI 118
+Y+++FGCS +Q+ +E M + G+ L + +++A++++ N+CTVK ++ + I
Sbjct: 3 VYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYKI 62
Query: 119 AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG---- 168
++V+GC+P+ + L I+GV I R+ E++ + +KG
Sbjct: 63 RSMGEKNVEVIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGG 122
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + L++P+ R N + I I+ GC AC+YC K+ARG L S+ +V
Sbjct: 123 EHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVE 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R +A G +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRAAVAGGCREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L L ++ + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDDLVDAFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMIITKFRARFEDLSL 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GIQFLNLDSTELL 401
TDII GF ETD++F +TV +++Y+ +V+IS++ PRP F NLDS L+
Sbjct: 300 FTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFRNLDSRILV 355
>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
2661]
gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 427
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 187/338 (55%), Gaps = 17/338 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N +D+E + L G+ + +N EEADI +INTC V+ +++ M I +
Sbjct: 14 VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 74 LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126
Query: 181 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
D+ K K + LPI GC+G C+YC K ARG L SY E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
I G K + ++++DT YG DIG NL LLN + G ++R+GM + L
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELT---QIKGEFIMRVGMMHAKNAELILD 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ EV ++ V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 303
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+E F T+ +++E K +H +++ R G +
Sbjct: 304 VGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTE 341
>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
Length = 417
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 188/335 (56%), Gaps = 14/335 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +T+GC+ N+ D+ M L + + +N EAD+ ++NTC V+ + M + I +
Sbjct: 3 VYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIKE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K LVVAGC + + SI+G Q + ++++ VE G ++ ++ ++
Sbjct: 63 LRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKIFSINAER 118
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P+V K + I+PI GC G C++C TK AR L SY++ S+V V+ + +G
Sbjct: 119 SEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVKEAVKNGA 175
Query: 239 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
EV L+ +D AYG D+G + L LLN + L +G M+RIGM P + I
Sbjct: 176 VEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFARDIDGIL 232
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
E +R+P ++ FLH+PVQSG D VL MNR+YT+ +++ +V +P + I TDII G
Sbjct: 233 EAMRNPKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEARSKIPNINITTDIIIGH 292
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
PGE + F T+ L+KE KF +VH++ + RP +
Sbjct: 293 PGEDENAFENTLELMKEIKFERVHLAMYSIRPNTR 327
>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 170/311 (54%), Gaps = 22/311 (7%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIKELKQYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDMDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + + ++ V+ + G E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG D
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDD 218
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 378 QVHISQFYPRP 388
++I++F PRP
Sbjct: 279 ILNITRFSPRP 289
>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
Length = 414
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 189/334 (56%), Gaps = 7/334 (2%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y++ +GC N +D+E + L G+ + D + AD+ +INTC V+ +++ M I
Sbjct: 2 KKVYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRI 61
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHRK 177
+ K+ K +VVAGC+P+ ++ +++G + ++ + ++++ +K G V L
Sbjct: 62 NELKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLEDD 119
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
K L + + + LPI GCLG CTYC K ARG+L SY E +V + +I G
Sbjct: 120 KSLHKKLDYIT-SSLITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKKG 178
Query: 238 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
K ++++++DT YG D NL LLN + +G ++R+GM + + E + E+ E
Sbjct: 179 TKCIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELIE 235
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
V + V FLH+P+QSG D +L M R YT+ +F+ +V+ + V + TDII GFP
Sbjct: 236 VYKTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEIVNEFRKKVKNLCFTTDIIVGFP 295
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GET+E F T+N++KE K +H +++ R G +
Sbjct: 296 GETEEQFENTLNILKELKPDYIHGAKYSQRKGTE 329
>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
Length = 417
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 191/336 (56%), Gaps = 7/336 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ + ++S + L+ + E+AD+ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTMNQADSDIIRAEVSR-EFELS-SVEDADVVVINSCGVIDYTERKILNRARQ 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K +V+AGC+P+ + + E+ +I + R+ EV++ + G+++ LL + ++
Sbjct: 61 LRQMGKTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEI 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
K R + I+ I GC G CT+C T+ ARG L S++ + +V ++ + G
Sbjct: 120 DKTRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYV 179
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ L+S+DTGAYG DIG NLP LL I A +G +R+GM NP L ++
Sbjct: 180 EIQLTSQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAF 236
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+Y FLH+PVQSG + VL M R++ + ++ VV + + I+TDII GFP E
Sbjct: 237 ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAFRKRFDDVMISTDIIVGFPTE 296
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
++E F ++++L++ + V+++++ PR G L
Sbjct: 297 SEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRL 332
>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
Length = 411
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 188/327 (57%), Gaps = 18/327 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC+ N +S + G L A G+ +D + +++ ++NTC V S ++ M I + K
Sbjct: 5 IETYGCTSNTGNSMELRGALIAHGHQESD-LDGSEVVILNTCAVTSRTERNMLRRIGELK 63
Query: 123 SAKKPLVVAGCVPQGSRDLKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+VAGC+P +L E +E V ++ IDRV++ + + H L LP
Sbjct: 64 GRR--LIVAGCLPAAIPELIESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
++ I+ GCLGAC YC K ARG L S + V +I+ G E+
Sbjct: 120 ---------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEI 170
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 301
L+S+D GAYG DIG +LP LL+ +++++ DG+ M+R+GM NP +L+ L ++ + ++
Sbjct: 171 QLTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKN 227
Query: 302 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 361
+Y F+H+P+QSGSD VL M R YT DF VV P + + TD+I GFPGE+D
Sbjct: 228 EKIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFRSRYPEISLTTDVITGFPGESD 287
Query: 362 EDFNQTVNLIKEYKFPQVHISQFYPRP 388
+DF T ++I+ + +V++++F RP
Sbjct: 288 QDFRMTEDVIRITQPDKVNVTRFSRRP 314
>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
Length = 430
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 180/328 (54%), Gaps = 27/328 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC +N D+ + L +G + E+AD ++NTCTV P++ M ++
Sbjct: 25 VYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRMLRRLSA 84
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +KPL V GC+P R+ + + V + +T++ L+
Sbjct: 85 LQ--EKPLFVTGCMPLVQRE----------AILAVCSPVIIHPDTIREASRALMTVG--- 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
++ V I+ I GCLG CTYC T+ ARG L S+ V+ + ++ + G E
Sbjct: 130 ---------SESVGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYE 180
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+++DT A+GRD G LP LL A+ + +P G+ LR+GM NP L L ++ +
Sbjct: 181 IQLTAQDTSAWGRDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFA 237
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
++ F+H+PVQSGSD +L M R YT+ +F +V P + IATD I GFPGET
Sbjct: 238 SDRLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVSAFRGRYPDISIATDFIVGFPGET 297
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+EDF++++ LI + +V+++++ PRP
Sbjct: 298 EEDFSRSLELIGRIRPAKVNVTRYSPRP 325
>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
Length = 440
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 197/353 (55%), Gaps = 20/353 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ TFGCS +Q+ +E M + G+AL S+ AD+ +INTCTVK ++ + +I +
Sbjct: 3 VHVATFGCSASQASAEIMRAIVRDKGHALVPLSD-ADVLVINTCTVKYATEQKILHIIRE 61
Query: 121 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ K ++V GC+P+ + +++ I+GV + RV E+++ K + R +
Sbjct: 62 AADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAKGRMQ 121
Query: 179 L------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +P++R N + I ++ GC +C+YC ARG L S+ E ++ +R
Sbjct: 122 IFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIADIRR 181
Query: 233 VIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+++G +E+WL+S+D G YG D + LP LL I +P G +R+GM NP
Sbjct: 182 AVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMMNPFS 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+L L ++ + + VY LH+P+QS SD VL MNR +++ + V+ +
Sbjct: 239 VLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVLRNMNRYHSIQEANHVIRQFRNKFDDLT 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ---FLNLDS 397
+ TDII GFPGET+EDF ++V ++E++ +V+IS++ PRP + F N DS
Sbjct: 299 LFTDIIVGFPGETEEDFKKSVKWVEEFRPDKVNISRYTPRPRTKAWDFHNSDS 351
>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
Length = 450
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 194/362 (53%), Gaps = 18/362 (4%)
Query: 51 LSPKIPG---------TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
+ +IPG + T Y++ +GCS ++ D+ MA +L GY E+AD+ L+
Sbjct: 1 MEAEIPGQAGRRAGKPSRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILV 60
Query: 102 NTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDR 157
NTC V+ ++ + + K + + VVAGC+ + L + + S++ Q ++R
Sbjct: 61 NTCAVRLDTEQRIAERLEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVER 120
Query: 158 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
V++ V+ G + +L ++ +P++ V + I GCLG C++C TK AR
Sbjct: 121 VLDAVDALESGRRLVVLDGRR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQ 179
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
+ SY+ +V RVR + G +E+ L+ D YG D+ NL L+ AI+ ++ +G
Sbjct: 180 VRSYSPRVIVERVREAVEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGD 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
+R+GM P + +L + +V R VY + H+PVQSG D VL M R YT+S+++ +
Sbjct: 238 YRIRVGMMTPDQVEPYLDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAI 297
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+ P IATDII G PGET E F TV L++E +F +VH++Q+ RP + ++
Sbjct: 298 HRRIKSRFPDAMIATDIIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASM 357
Query: 396 DS 397
+
Sbjct: 358 EQ 359
>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
Length = 402
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 12/316 (3%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQ 136
M L G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+
Sbjct: 1 MMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLAS 60
Query: 137 GSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVE 194
+ S++G Q + ++V+VVE + K +V L K L PKV K +
Sbjct: 61 AEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IA 115
Query: 195 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 254
ILPI GC G C +C TK AR L SY +V VR + G E+ LS +DT AYG D
Sbjct: 116 ILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLD 175
Query: 255 IGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 313
+G I L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQ
Sbjct: 176 LG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQ 232
Query: 314 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 373
SG D VL MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++
Sbjct: 233 SGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRD 292
Query: 374 YKFPQVHISQFYPRPG 389
KF ++H++ + RP
Sbjct: 293 IKFERIHLAMYSIRPN 308
>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
4184]
Length = 415
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 31/337 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D+E + +L GY N +EAD+ L+ TC V+ + I +
Sbjct: 4 IYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIRE 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K L+VAGC L L +I + +++ E ++G + R +
Sbjct: 61 LVKLGKELIVAGC-------LARLRPYTIKSLAPHAKLIYPSE--IEGGKERSMK----- 106
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
LPK R + +P+ VGCLG CT+C TK+ RG G S + +V ++ +A G
Sbjct: 107 --TLPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKG 163
Query: 238 VKEVWLSSEDTGAYGRDIGVN----LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D G LP LL+ I+ E+ +G +RIGM+ P + +
Sbjct: 164 AREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVD 221
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATD 351
++ +++ R VY + H+PVQSGSD VL AM R+YT+ ++R ++ + EL + IATD
Sbjct: 222 QLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGLIRRIRRELGDNVFIATD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
II GFPGET+EDF +TV L++E +F ++H+++F PRP
Sbjct: 282 IIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRP 318
>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
superfamily, TRAM family [uncultured archaeon]
Length = 430
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 182/346 (52%), Gaps = 28/346 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NTCTV ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + K K +VVAGC+ +L ++ G +V ++
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVR---------------------SILGDDVAMVTP 106
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + A + ++ + + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 107 RDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKICEAVKSAVES 166
Query: 237 GVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELL 401
FP ET+EDF ++ L++E K +V+I++F PRP + L T+LL
Sbjct: 284 FPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKL--TDLL 327
>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
2162]
gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
2162]
Length = 428
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 189/341 (55%), Gaps = 24/341 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M ++ G+ L ++ +AD +INTCTV+ ++ M I +
Sbjct: 3 VYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIRE 62
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
A K L+VAGC+ + + G S++ Q RVVEV+E R++
Sbjct: 63 LYKLSMEAGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVV 117
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ A D V V +P+ GCL C++C ++HAR L S++++++V V +
Sbjct: 118 MINGVRARDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAV 177
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
DG EV L+ D G YG D+ LP L+ IV + G+ MLR+GM NP EHL
Sbjct: 178 RDGAVEVQLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHL 231
Query: 293 KEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ I E V VY FLH+P+QSGS+ VL M R YT+ ++ +VD + +P +
Sbjct: 232 RHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRVKSSIPEVS 291
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
IATDII G P E++EDF +T+ +I+E F +VH++ + RP
Sbjct: 292 IATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRP 332
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 195/352 (55%), Gaps = 20/352 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE MAG L GY T+N EEAD+ L+NTC+V+ + + + +
Sbjct: 4 YIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGEF 63
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K KK + V GC+ Q G ++ + IV G I + ++EE G++ +
Sbjct: 64 KKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAIE 123
Query: 173 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ ++ DGVKE+ L ++ AYG+D G V LL A VAE+ DG +R +P +
Sbjct: 184 VQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRDL 240
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E +K +A++ P + LH+P+Q+GSD +L AM+R YT ++ ++ L + +P +
Sbjct: 241 DEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNIA 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPG +L TE
Sbjct: 298 LSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTE 349
>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
motif-related TRAM [Methanococcus maripaludis S2]
Length = 425
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 185/337 (54%), Gaps = 13/337 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+I GFP ET+E F T+ ++K+ K H +++ R
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRK 335
>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
Length = 401
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 174/308 (56%), Gaps = 12/308 (3%)
Query: 86 GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK-KPLVVAGCVPQGSRDL--K 142
G+ + DN ++A+I +INTC V+ ++ M I + K K LVVAGC+ +
Sbjct: 8 GHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLASAEPAVVVS 67
Query: 143 ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 202
S++G Q + ++V+VVE + K +V L K L PKV K + ILPI GC
Sbjct: 68 LAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IAILPIADGC 122
Query: 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL 262
G C +C TK AR L SY +V VR + G E+ LS +DT AYG D+G I
Sbjct: 123 AGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLDLG---QIK 179
Query: 263 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQSG D VL
Sbjct: 180 LSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQSGDDNVLK 239
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++ KF ++H+
Sbjct: 240 LMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHL 299
Query: 382 SQFYPRPG 389
+ + RP
Sbjct: 300 AMYSIRPN 307
>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 169/311 (54%), Gaps = 22/311 (7%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQG 137
M GQ A G + EEAD+ LI TC V +++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKKIVVYGCLPSA 57
Query: 138 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 197
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 198 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 257
I GCLG CTYC T+ ARG + S + E ++ V+ + E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTAAYGRDIGT 161
Query: 258 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 317
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG +
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDN 218
Query: 318 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 377
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 378 QVHISQFYPRP 388
++I++F PRP
Sbjct: 279 ILNITRFSPRP 289
>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
Length = 431
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 20/338 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 10 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 69
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 70 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 122
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 123 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 175
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 176 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 233
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 234 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 293
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETDED ++++L++E + +V++++F RPG NL
Sbjct: 294 TETDEDHERSMDLLREIRPEKVNVTRFSKRPGTDAANL 331
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 125/352 (35%), Positives = 197/352 (55%), Gaps = 20/352 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DS+ MAG L GY + E+ADI L+NTC+V+ P Q + L
Sbjct: 5 YIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALGEF 64
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K+ K V V GC+ Q G L++ V +V G I + +++EE L+G++ V
Sbjct: 65 KKIKNKKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVE 124
Query: 173 LLHRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L +L P VR N++ + + GC CTYC + RG S + ++
Sbjct: 125 ILEDIDQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQE 184
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ +I DGVKE+ L ++ AYG+D+G V LL A VA++ +G +R +P +
Sbjct: 185 VQWLIDDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDL 241
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E +K +AE+ P + LH+P+Q+GSD +L AM R YT ++ ++ L + +P +
Sbjct: 242 DEETIKAMAEI---PQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKKYIPDIS 298
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
++TDII GFPGET ED+ +T+ ++KE ++ QV ++ PRPG + TE
Sbjct: 299 LSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPMTE 350
>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 417
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/334 (33%), Positives = 186/334 (55%), Gaps = 18/334 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++ +GC+ N +D+ + L F + +TDN E+AD+ +INTC V+ +++ M I
Sbjct: 8 IYVEGYGCTLNIADTNIIENSLKEFNFEITDNVEDADLVIINTCVVRLETENRMFARINY 67
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRK 177
KS K +VVAGC+ + + K++E ++ D ++ E L G HE + K
Sbjct: 68 FKSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNK 118
Query: 178 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
K ++L + + + LPI GC+G C+YC K ARG L SY+ E +V + +I
Sbjct: 119 KENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELI 178
Query: 235 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G K + ++++DT YG DI NLP L+N + + +G ++RIGM + + + L +
Sbjct: 179 NSGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDD 235
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E + V LH+P+QSG D VL AM R YT+ +F ++V+ + + + TDII
Sbjct: 236 LIEAYKDEKVAKLLHLPLQSGDDGVLKAMKRGYTVDEFISIVNEFRKKIEDLTFVTDIIV 295
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GFP ET+E F T+ ++++ K +H +++ R
Sbjct: 296 GFPTETEEAFENTLEVLRKIKPDYIHGAKYTSRK 329
>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
Length = 425
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 185/337 (54%), Gaps = 13/337 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG + VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDNQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+I GFP ET+E F T+ ++K+ K H +++ R
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRK 335
>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
768-28]
gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
768-28]
Length = 452
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 187/334 (55%), Gaps = 17/334 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DS+ + +L + G+ T++ + AD +INTC V+ ++ L+ K
Sbjct: 9 TFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELKLLRKLSEE 68
Query: 125 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KK 178
K L+V GC+ + + ++ + V E ++E + G ++ K
Sbjct: 69 YLNKRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKY 126
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 235
LP+ P+ +++V +PI VGCLG C++C TK R G + SY + + V ++
Sbjct: 127 LPSY-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVS 183
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E++L+ ++ AYGRD G +L LL I+ ++ DG M+R+GM P + + +
Sbjct: 184 RGAREIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRL 241
Query: 296 AEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
++++ VY F H+PVQSGSD +L+ M R+Y++S F+ +V + + P I TDII
Sbjct: 242 LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFKDIVTRIRRVFPDATIVTDIIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GFPGETDEDF +V LI+E +V+++++ RP
Sbjct: 302 GFPGETDEDFWASVRLIEELSIDKVNLARYSRRP 335
>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
50581]
Length = 525
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 193/386 (50%), Gaps = 60/386 (15%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEEADIWLINTCTVKSPSQ 111
+ M T GC HN ++S+ +A L G +T + +++ D+ I +CTVK+PS+
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGALITHSNGKYITPEGAKDVDVLYITSCTVKNPSE 85
Query: 112 SAMDTLIAKCKSAKKPLVVAGCVPQG----------SRDLKELEGVSIVGVQQIDRVVEV 161
+ K A +V+ GCVPQ + K+L ++ Q + + +
Sbjct: 86 DKAFVHVQKGLEAGVVVVLGGCVPQSYGAVNDELRRASASKQLIISGVLTQQWLADLPRL 145
Query: 162 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 189
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDLHTLSDSHLLQ-PALRMTQPSDKIGVPAAISYVTKEATKDINVEYLKCTPIHRA 204
Query: 190 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 248
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWLTGEDT 264
Query: 249 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 306
A+GRD G LL I L + T ML+IGMT+P ++ + ++ VY
Sbjct: 265 LAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQCKYVYK 324
Query: 307 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 366
FLH+PVQSGSD +L+ M R Y + F L +P + + TDIICGFPGETDED Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICGFPGETDEDHAQ 384
Query: 367 TVNLIKEY-----KFPQVHISQFYPR 387
++NL + +F V+I+Q+Y R
Sbjct: 385 SLNLFRNLSKDAPRFQVVNITQYYAR 410
>gi|171186225|ref|YP_001795144.1| RNA modification protein [Pyrobaculum neutrophilum V24Sta]
gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Pyrobaculum neutrophilum
V24Sta]
Length = 415
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 30/336 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D+E + +L G D+ EEAD+ L+ TC V+ + I +
Sbjct: 4 IYVETYGCWLAKADAEVVRQRL---GLERADSPEEADLVLVYTCAVREDGEVRQLARIRE 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +VVAGC+ + L+ S ++ + ++G R + R
Sbjct: 61 LAGLGRRMVVAGCLAR----LRPYTVKSAAPGAEL-----LYPSQVEGGREREMRR---- 107
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
LP+ V + P+ VGCLG CT+C TK+ RG G S + + +V VR +A G
Sbjct: 108 ---LPRYE-GGVVYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARG 163
Query: 238 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+EV+L+ +D YG D G NLP LL I+ E+ +G +RIGM+ P +
Sbjct: 164 AREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREV--EGDYRVRIGMSEPWVFAKFAD 221
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
++ +V+ R VY + H+PVQSGSD VL AM R YT+ ++R +V + + IATDI
Sbjct: 222 QLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDI 281
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I GFPGE +E+F ++V L++E KF +VH+++F PRP
Sbjct: 282 IVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRP 317
>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
Length = 425
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 182/337 (54%), Gaps = 13/337 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + L DN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 171
KS K +VVAGC+ + + +K L V I+ G+ D +++ E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEKYNEYNQ 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L L + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D NL L++ I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V+D + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+I GFP ET+E F T+ ++K+ K H +++ R
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRK 335
>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 28/329 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L + G L +EADI +I TC V ++ M I +
Sbjct: 3 IYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ V+ GC L ++G I G ++ IDR +E +
Sbjct: 63 LSRLGRVKVI-GC-------LSAIKGSEISGGNIEAIDR-----------NEFQQFQE-- 101
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
L+ + + + +PIN GC G C +C + ARG L S E +V ++R ++A G
Sbjct: 102 --YLEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGK 159
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
+E+ +SS DT AYG+D G LP L+ I A DG MLR+GM P +E L ++ E
Sbjct: 160 REIRISSLDTAAYGKDTGYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEA 216
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
P V+ FLH+PVQSG D VL+AMNREYT+ +F ++++ + P M I+TD+I G+
Sbjct: 217 YDDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHA 276
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
E D F+ T +LI++ + +++++F PR
Sbjct: 277 ENDRSFDLTCDLIRKVQPEIINVTRFSPR 305
>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
Length = 425
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 186/336 (55%), Gaps = 13/336 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEV 171
KS K +VVAGC+ + + +K L V +V ++ +++++ L G
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKTLADV-LVMPREAQYSGKILKDNLLKGCSEKNGKSN 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L+ + + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 122 ENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
+I GFP ET+E F T+ ++K+ K H +++ R
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQR 334
>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
Length = 417
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 201/393 (51%), Gaps = 18/393 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDAADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+S L+V GC+ + E V Q+ EV E G E P
Sbjct: 65 ESETADLIVTGCMALAQGEEFRAENVDA----QVLHWDEVPEAVTNG-ECPTTTPGAEPV 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD + ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+
Sbjct: 120 LD-------GVIGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+AEV
Sbjct: 173 RITGQDTGVYGWDNGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREELAEVFA 230
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
H +Y+FLH PVQSGSD VL M R++ + + +V+T + + ++TD I GFP E
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLEDMRRQHEVEQYVDIVETFDDYLEEWTLSTDFIVGFPTE 290
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVMLISILV 419
TD D Q++ L++E + ++++++F RPG ++ + + + + + ++
Sbjct: 291 TDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKAMSDLKMDVVA 350
Query: 420 KLHYFSLDDQRNVLFGMTKQFHLYLVVTHDESY 452
+ H + +R VL +T+Q V +D+SY
Sbjct: 351 EAHEEMVGTERRVL--VTEQGTGDSVKCYDDSY 381
>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 416
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 186/339 (54%), Gaps = 35/339 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E + +L G L N EE+D+ LI TC V+ + I
Sbjct: 4 VYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARIRD 60
Query: 121 CKSAKKPLVVAGCVPQ-GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ + ++VAGC+ + +K L G +++ QQ++ G E + K
Sbjct: 61 LAKSGREMIVAGCLARLRPYTIKSLAPGAALIYPQQVE----------GGPEREM---KI 107
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIA 235
LP V +P+ VGCLG CT+C TK+ RG G S E +V +V+ +A
Sbjct: 108 LPEFS------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161
Query: 236 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +E++L+ +D YG ++ G NLP LL I+ E+ DG +RIGM+ P +
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKF 219
Query: 292 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 349
+I +V+ R VY + H+PVQSGSD VL M R+YT+ ++R +V + ++ IA
Sbjct: 220 ADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIA 279
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
TDII GFPGE +EDF TV L +E +F ++H+++F PRP
Sbjct: 280 TDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRP 318
>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
ME]
gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
ME]
Length = 411
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 190/339 (56%), Gaps = 21/339 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC N++D+E + L G+ +T++ +EA+I +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRL 173
S K ++VAGC+P+ ++ ++EG + ++ R E++++ L +G E L
Sbjct: 63 LNSLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKEL 120
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
KKL L + K V LPI+ GCLG C+YC K ARG L SY E LV + +
Sbjct: 121 Y--KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEEL 172
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G K + ++++DT YG D G NL LL + +G ++R+GM + ++ L
Sbjct: 173 VKGGAKCLLITAQDTACYGLDRGDNLANLLKDLC---QIEGEFIMRVGMMHAKYLSPILD 229
Query: 294 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI E+ R + FLH+P+QSG D +L M R Y++ +F ++V V + TD+
Sbjct: 230 EIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEFKRKVKDLCFTTDV 289
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
I GFPGET+E FN T+ ++++ K +H +++ R G +
Sbjct: 290 IVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTE 328
>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
Length = 420
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 202/400 (50%), Gaps = 45/400 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L A G + EEAD ++NTCTV P++ M L
Sbjct: 26 VYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTERLM--LRQM 83
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKL 179
+ + L + GC+P Q+D + EV + + E+R
Sbjct: 84 RRYSGHDLYLTGCMP----------------AVQMDAICEVCSPKVIPPEEIR------- 120
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
A L + ++ + GC G C+YC T++ARG L S+ + RV+ + +G
Sbjct: 121 AAYTLVNTTVPSAIGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAV 180
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
EV L+ +D ++G D+G +LP LL I A P G LR+GM NP +L L ++
Sbjct: 181 EVQLTGQDLSSWGLDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAY 237
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ ++ FLH+P+QSGSD VL+AMNR YT SD + ++ E+ P + + TD+I GFPGE
Sbjct: 238 QSDRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQILRAFREVHPDLTLMTDLIVGFPGE 297
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVMLISILV 419
TD+DF +T+ +I +V+++++ RPG + +L L S K S V
Sbjct: 298 TDQDFEETLQMITALSPNKVNMTRYSGRPGTP-----AADLPDLQDSVKKDR----SRAV 348
Query: 420 KLHYFSLDDQRN-------VLFGMTKQFHLYLVVTHDESY 452
H +L Q+N V +T+Q L V+T DE Y
Sbjct: 349 NDHVTTLYHQKNSRWIGEEVGVVVTEQRKLGSVITRDERY 388
>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
violaceus PCC 7421]
gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
Length = 441
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 17/344 (4%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +T + TFGC N++DSE MAG L+ GY + D S+ AD+ L NTCT++ ++ +
Sbjct: 7 PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66
Query: 116 TLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + K+ LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +
Sbjct: 67 SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126
Query: 168 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 225
G +V + + + L D+ K RR+ V I GC CTYC RG S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + A G KEV L ++ AYGRDIG NL LL + P G LR ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + L IA P V H+P QSG + VL M R YT +R +++ + ++P
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D+I GFPGET+ F ++ L+ E +F ++ + + PRPG
Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPG 343
>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 424
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 188/334 (56%), Gaps = 13/334 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC+ NQ+DS+ M G LS G + E+A++ +IN+C V ++ + +
Sbjct: 3 VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 176
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 61 LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V +
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII G
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVG 294
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
FP ET+E F ++ LIKE + V+I+++ R G
Sbjct: 295 FPTETEEAFWKSYELIKETRPDIVNITRYSARKG 328
>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
MS2]
Length = 448
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 177/331 (53%), Gaps = 28/331 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ +Y++++GC++N +D+ + L G LT +EAD +INTCTV ++ M +
Sbjct: 42 KKVYIESYGCTYNHADARRLEAILEGLGCRLT-GPDEADAVIINTCTVIGATERKMLRRL 100
Query: 119 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
A A + L V GC+P R+L + V V D + HE +
Sbjct: 101 A--AFADRDLYVTGCMPLVQREL--INSVCTAHVIHPDEI----------HE-------R 139
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
+ P + ++ + GC+G C+YC T+ ARG L S E ++ VR ++ G
Sbjct: 140 ASGVGSPGA---GAIGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGA 196
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ +D A+G D G LP LL AI E+P G +R+GM +P +L L + +
Sbjct: 197 FEIQLTGQDVAAWGLDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDA 253
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
++ FLH+PVQSGSDAVL M R Y +D +VD E P M I++D I GFPG
Sbjct: 254 YASEKMFRFLHLPVQSGSDAVLERMQRGYRAADVIRIVDAFRERYPDMMISSDFITGFPG 313
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ETDE+F QT++L++ F +V+I+++ RPG
Sbjct: 314 ETDEEFRQTLDLLRRAAFVKVNITRYSRRPG 344
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 20/352 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDTL--I 118
Y++TFGC N +DSE MAG L GY + +EAD+ L+NTC+V+ P Q + L
Sbjct: 4 YIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALGEF 63
Query: 119 AKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 172
K K K + V GC+ Q G L++ + +V G I + +++EE G++ V
Sbjct: 64 KKIKKDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVE 123
Query: 173 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILRE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V+ ++ DGVKE+ L ++ AYG+D+G V LL A VA +P G +R +P +
Sbjct: 184 VQFLVEDGVKEIHLIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDL 240
Query: 289 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E +K +A++ P V LH+P+Q+GSD VL AM+R YT ++ +D L + +P +
Sbjct: 241 DEDTIKVMADL---PQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKYIPDIA 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPG ++ TE
Sbjct: 298 LSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTE 349
>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
Length = 428
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 186/339 (54%), Gaps = 21/339 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++TFGC N+ +S MA L G+ + ++ E AD+ ++NTC V+ +++ + + +
Sbjct: 4 VYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLRE 63
Query: 121 CKSAKKP----LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ ++ LVV+GC+ P+ D+ S+V I+++ EVVE K VR
Sbjct: 64 LEELRQKRGFRLVVSGCLVNVRPKSILDVAP--SASLVEPDAIEKIPEVVESEDKLLIVR 121
Query: 173 LLH--RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGR 229
R LP V ++PI GCLG+C +C RG + SY ++ ++
Sbjct: 122 QYKASRNVLPDYS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIEN 175
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR ++ G +E++L+ +D AYG D+G NL L+ I+ E+ DG +R+GM P +
Sbjct: 176 VRAAVSKGAREIFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLG 233
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
LK + E+ R +Y + H+P QSG D VL M R+YT+ +++ +V+T+ I
Sbjct: 234 RFLKNLLELFRDERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNTIRGSGWKFSIV 293
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
TDII GFPGE + +F T+ ++E F +VH++++ RP
Sbjct: 294 TDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRP 332
>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
Length = 426
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 182/338 (53%), Gaps = 20/338 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ D EGV I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 229 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETDED +++ L++E + +V++++F RPG +L
Sbjct: 289 TETDEDHERSMALLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
Length = 429
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 186/340 (54%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETDED +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
Length = 437
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 185/338 (54%), Gaps = 13/338 (3%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T Y++T+GC+ ++ DSE M L GY + EAD+ ++NTC V+ +++ +
Sbjct: 8 TTKYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKR 67
Query: 118 IAKCKSAK---KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 172
+ + K LVV+GC+ + S L+ S+V Q + R+++ V TL
Sbjct: 68 LKELNGLSLQGKKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYM 125
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L + + L P R + V + I+ GCL C++C+TK AR +L SY ++V VR
Sbjct: 126 LDGERDVNFLPKPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRD 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G +E+ L+ +D AYG D+ LP L+ I+ ++P G LRIGM P +E
Sbjct: 184 LVQGGAREIRLTGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAME 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ ++ +V R V+ F H+PVQSG D VL MNR YT+++F+ + + P AT
Sbjct: 242 IIDDLLDVYRDGRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKVKAKYPSSLFAT 301
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
DII G PGE + F +V L++E KF +V+++Q+ RP
Sbjct: 302 DIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRP 339
>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
Length = 429
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 188/339 (55%), Gaps = 23/339 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 4 FIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGEL 63
Query: 122 KSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 64 RKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD-D 119
Query: 178 KLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KL +D + R +K + I GC CTYC + RG S +E ++ V+ +
Sbjct: 120 KLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQEVKNLSL 179
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILE 290
+GV+E+ ++ AYG+D+ G +L LLN + + RI +T+ P F L+
Sbjct: 180 NGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYPTDFSLD 234
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I++
Sbjct: 235 IAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASISS 291
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFP ET++DF QTV L+KE KF +++++ + PR G
Sbjct: 292 DIIVGFPDETEDDFQQTVKLVKEIKFERLNLAIYSPREG 330
>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
Length = 413
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 187/337 (55%), Gaps = 24/337 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++ +GC+ N +D+ + L +G+ +T N E+AD+ +INTC V+ +++ M I
Sbjct: 3 VYVEGYGCTLNTADTNIIENSLRDYGFEITSNIEDADLVIINTCVVRLETENRMFARINY 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVE-------VVEETLKGHEVRL 173
KS K +VVAGC+ + + K++E ++ + + + + +E++ ++ L
Sbjct: 63 FKSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINL 120
Query: 174 LHRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ K P+L P LPI+ GC+G C+YC K ARG L SY+ E LV + +
Sbjct: 121 EEKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAK 170
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+I G K + ++++DT YG D NLP L+N + + +G ++RIGM + +
Sbjct: 171 ELINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENI 227
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L ++ E + V LH+P+QSG D VL AM REYT+ +F ++V+ + + + TD
Sbjct: 228 LDDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKREYTVDEFISIVNEFRKKIKDLTFVTD 287
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
II GFP ET+E F T+ ++++ K +H +++ R
Sbjct: 288 IIVGFPTETEEAFENTLEVLRKLKPDYIHGAKYTSRK 324
>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
Length = 425
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 183/336 (54%), Gaps = 11/336 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INTC V+ ++ M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 120 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEVRLLHRK 177
KS K +VVAGC+ + + +K L V I+ + + + LKG E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEKNGKSNE 122
Query: 178 KLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L D + KV + LPI GCLG+CTYC K ARG+L SY + + +
Sbjct: 123 NLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIFKKAEE 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F L
Sbjct: 183 LVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPLL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+ E + V FLH+P+QSG D VL MNR Y++ +F +V++ + + TD+
Sbjct: 240 DELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNEFKLKIKNLNFTTDV 299
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I GFP ET+E F T+ ++K+ K H +++ R
Sbjct: 300 IVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRK 335
>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
DSM 16532]
gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
DSM 16532]
Length = 432
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 36/347 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD ++INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVESILREGHVLVNSIEDADTFIINTCIVRLDTEYHMVKRIRE 62
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV L
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEV-----------LK 111
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S++++++V
Sbjct: 112 TRGKIVLIDGLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMVRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+ +
Sbjct: 229 ---EHLRHILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEVKS 285
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+PG+ IATDII G P E +EDF++T+ +I+E +F +VH++ + RP
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFSETLKVIRELEFERVHLAGYSIRP 332
>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
Length = 429
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 184/340 (54%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETDED +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
Length = 418
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/341 (34%), Positives = 186/341 (54%), Gaps = 25/341 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M A+
Sbjct: 5 HIETYGCTANRGESRQIERSLRDGGHHPADGPEEADVAILNTCTVVEKTERNM-LRRAEE 63
Query: 122 KSAKKP--LVVAGCVP--QGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 176
A+ P LVV GC+ QG +E + V D V E V + E
Sbjct: 64 LDAETPADLVVTGCMALAQG----EEFAAADLDAEVLHWDEVPEYV----RNGECPTTTP 115
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TKHA G + S +VE + + R ++
Sbjct: 116 DTEPVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHA 168
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G +E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+
Sbjct: 169 GAREIRITGQDTGVYGWDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREEL 226
Query: 296 AEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
AEV H +Y+FLH PVQSGSD VL M R++ +S++ VV+T + + ++TD I
Sbjct: 227 AEVFAAHDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDYLDEWTLSTDFIV 286
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
GFP ETD DF Q++ L++E + ++++++F RPG ++
Sbjct: 287 GFPTETDRDFEQSMALLRETRPEKINVTRFSKRPGTDAADM 327
>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
Length = 429
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 184/340 (54%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+S L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 ESETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V H +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 GVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELAYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETDED +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
Length = 429
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 185/340 (54%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETD D +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDADHERSMELLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
Length = 423
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 183/346 (52%), Gaps = 25/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG +E I+ + V E G
Sbjct: 65 ESETADLIITGCMALAQGEEFREEEVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL I +E+ DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
RH +Y+F+H+PVQSGSDAVL M R++ ++ F VV+T + ++TD I GFP
Sbjct: 229 FDRHEKLYNFIHLPVQSGSDAVLEEMRRQHRVAKFLEVVETFDRELDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ET+ D Q++ L +E + +V++++F RPG D+ E+ L
Sbjct: 289 SETEADHEQSMALFREVRPEKVNVTRFSKRPGT-----DAAEMKGL 329
>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 437
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 186/347 (53%), Gaps = 39/347 (11%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N ++ YM Q GY + D SEEADI+++NTCTV S + S + K KS
Sbjct: 8 TLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTVTSVADSKSRKALRKAKSR 67
Query: 125 K-KPLVVA-GCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
K LVVA GC P+ L+E++ I G + ++V++VE+ ++G K
Sbjct: 68 NPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG---------K 116
Query: 179 LPALDLPKV-RRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVES 225
LP L L + + N+F + L I GC C+YC ARG + S E
Sbjct: 117 LPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSEKPEK 176
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ +V+ +I G KE+ L+ G YG D+ ++L L+ IV ++P G LRI
Sbjct: 177 VLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLRISSV 233
Query: 284 NPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
P +E E+ EV+ P + LH+P+QSGSD +L+ M R YT D++T+V+ ++
Sbjct: 234 EP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVERILSK 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + I TD++ GFPGET+EDF +T IKE+ F +H+ + PR G
Sbjct: 291 NPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKG 337
>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
Length = 429
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 182/340 (53%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETD D +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADL 326
>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
1221n]
gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
1221n]
Length = 432
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/347 (34%), Positives = 184/347 (53%), Gaps = 36/347 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC+ N+SD M + G+ L ++ E+AD +INTC V+ ++ M I +
Sbjct: 3 VYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTEYHMVKRIRE 62
Query: 121 ----CKSAKKPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
K L+VAGC+ + LK S+V Q + EV L
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEV-----------LK 111
Query: 175 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R K+ +D + R + + +PI GCL C++C TKHAR L S+ ++++V
Sbjct: 112 TRGKVILIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHARRILVSHGIDAVVK 171
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMIRIGMINP- 228
Query: 287 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+
Sbjct: 229 ---EHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEAKS 285
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+PG+ IATDII G P E +EDFN+T+ +I+E +F +VH++ + RP
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRP 332
>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
Length = 429
Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 183/340 (53%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETD D +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADL 326
>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
Length = 452
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 186/370 (50%), Gaps = 18/370 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 2 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 62 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 122 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 182 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 239
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 240 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 297
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLF 405
+ ++TDII GFPGET +DF T L+ E + QV + R G ++D ++
Sbjct: 298 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 357
Query: 406 SNYKFTVMLI 415
+ V L+
Sbjct: 358 QRFDRLVDLV 367
>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
Length = 430
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 181/338 (53%), Gaps = 20/338 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ QG E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRNEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +++A+V
Sbjct: 171 ELRITGQDTGVYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAKHDTLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETDED +++ L++E + ++++++F RPG +L
Sbjct: 289 TETDEDHERSMALLREIRPEKINVTRFSKRPGTDAADL 326
>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
Length = 443
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 185/341 (54%), Gaps = 21/341 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ + +
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFE 122
Query: 176 RKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
LD LP++R +K + I GC CTYC + RG S +E ++ V
Sbjct: 123 ----DHLDEYTHELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEV 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R + G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 179 RELAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDF 235
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I
Sbjct: 236 SNELIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPDVAI 293
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++DII GFP ET+EDF +TV+L+++ +F +++++ + PR G
Sbjct: 294 SSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREG 334
>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus TCF52B]
gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
TCF52B]
Length = 429
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 23/339 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++KT+GC N++DSE L GY +N EADI ++NTC V+ ++ + I +
Sbjct: 4 FIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGEL 63
Query: 122 KSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 64 RKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD-D 119
Query: 178 KLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KL +D + R +K + I GC CTYC + RG S ++ ++ V+ +
Sbjct: 120 KLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILREVKNLSL 179
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILE 290
+GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P F L+
Sbjct: 180 NGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYPTDFSLD 234
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I++
Sbjct: 235 IAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASISS 291
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFP ET++DF QTV L++E KF +++++ + PR G
Sbjct: 292 DIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREG 330
>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 401
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 168/327 (51%), Gaps = 24/327 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY + +GC+ NQ ++ +L G L N +EAD+ +I TC V ++ M I
Sbjct: 3 IYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQN 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
K V+ P + + E + VS++ + EV++E +
Sbjct: 63 LSRFGKVEVIGCLAPVKGKTMVE-DNVSVIEKDRFRSFQEVIDEVSPVNA---------- 111
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
+ V +PIN GC G C +C + ARG L S E + G+++ ++ G+KE
Sbjct: 112 ----------EIVSGIPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKE 161
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DIG+ LP L+ I E+ D LR+GM P LE + ++ R
Sbjct: 162 IKITSLDTAAYGKDIGLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYR 218
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
V+ FLH+PVQSG D VL MNREYT+SDF + E P ++TD+I G+ E
Sbjct: 219 SEKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAEN 278
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPR 387
D+ F +TV LI++ + +++++F PR
Sbjct: 279 DDSFEKTVQLIEKIRPEIINVTKFSPR 305
>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
Length = 459
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 186/370 (50%), Gaps = 18/370 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+ADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDDVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLF 405
+ ++TDII GFPGET +DF T L+ E + QV + R G ++D ++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 406 SNYKFTVMLI 415
+ V L+
Sbjct: 365 QRFDRLVDLV 374
>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
Length = 430
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 181/338 (53%), Gaps = 20/338 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNSCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L+V GC+ QG +E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFREEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETDED ++++L++E ++++++F RPG +L
Sbjct: 289 TETDEDHAKSMDLLREVHPEKINVTRFSKRPGTDAADL 326
>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
Length = 429
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 182/348 (52%), Gaps = 40/348 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC+ QG+ D +E +G + ++LH +
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-----------------------EGIDAQILHWDDV 100
Query: 180 PALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA P V + V ILPI GC+ C+YC TK A G + S +V+ V +
Sbjct: 101 PAAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGV 218
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E+A V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T +
Sbjct: 219 HGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWT 278
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
++TD I G+P ETD D +++ L++E + +V++++F RPG +L
Sbjct: 279 LSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADL 326
>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
petrophila RKU-1]
gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
RQ2]
gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
RKU-1]
gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
Length = 443
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 186/341 (54%), Gaps = 21/341 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ + +
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 176 RKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
LD LP++R +K + I GC CTYC + RG S +E ++ V
Sbjct: 123 ----DHLDEYTHELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEV 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R + G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 179 RELAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDF 235
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I
Sbjct: 236 SDELIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAI 293
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++DII GFP ET+EDF +T++L+++ +F +++++ + PR G
Sbjct: 294 SSDIIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKG 334
>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
Length = 429
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGV--SIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
++ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V H +Y+F+H PVQSGSD VL M R++ + FR + +T + ++TD I G
Sbjct: 227 AVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIAETFDRELAYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETDED +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADL 326
>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
Length = 429
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 182/340 (53%), Gaps = 24/340 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+P ETD D +++ L++E + +V++++F RPG +L
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADL 326
>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
Length = 414
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 199/393 (50%), Gaps = 34/393 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESRAIERRLRDGGHHPVDGPANADVAILNTCTVVEKTETNMRRRAE 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ A +VV GC+ QG + +L+ ++ G ++ VV + E
Sbjct: 63 ELDEATADVVVTGCMALAQGEQ-FADLD-ATVCGWDEVPEVV-------RNGECPRPTPD 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 114 AEPILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V +Y+FLH PVQSGS+ VL M R++ +S+FR VV+T + + +ATD I G
Sbjct: 224 DVFAEEEKLYNFLHAPVQSGSNDVLGDMRRQHQVSEFRDVVETFDDRLDHWTLATDFIVG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFTVMLI 415
FP ETD D Q++ L++E ++++++F RPG D+ E+ L + K +
Sbjct: 284 FPSETDADHEQSMALLRETTPERINVTRFSKRPGT-----DAAEMKGLGGTKKKERSKAM 338
Query: 416 SILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTH 448
S L +D + M + H +VV H
Sbjct: 339 SDL------KMDVVGDAYESMVGERHEVMVVEH 365
>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 445
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 177/347 (51%), Gaps = 24/347 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ + T GC NQ +S +A GY + D SE ADI++INTCTV LI
Sbjct: 13 TVAVTTLGCKVNQYESAALATLFRERGYKVVDFSEAADIYVINTCTVTHLGDRKSRQLIR 72
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL- 174
+ + +VV GC Q S ++ + GV +VG + R+V++VEE E L
Sbjct: 73 RATRNNPHARVVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAV 132
Query: 175 --------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++LP LP ++ L I GC C YC +ARG L S E++
Sbjct: 133 VRDVFADQDYEELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENV 188
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ R ++A G KE+ L+ TGAYG+D G +L L+ + AE+P G LR+
Sbjct: 189 LAEARRLVAGGFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVE 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I L +I P V LH+P+QSG D VL+ M R YT + FR +V + VP
Sbjct: 246 PMDITGKLVDIMAT--RPNVCRHLHIPLQSGDDTVLARMRRHYTTAWFRELVQRVRGCVP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
G+ I TDII GFPGETD F T N ++E F ++H+ ++ PR G +
Sbjct: 304 GIAITTDIIVGFPGETDGQFENTFNFVREMAFARLHVFKYSPRQGTE 350
>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
Length = 434
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 177/338 (52%), Gaps = 17/338 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ D GV +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S TVE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGDFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ET+ D ++++L+ E + ++++++F RPG ++
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
Length = 442
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/338 (34%), Positives = 178/338 (52%), Gaps = 17/338 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHHPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ ++ E V +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGEMFEEAEVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELAEV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR +VDT + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDEVLEDMRRQHRVEKFREIVDTFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD+D ++++L+ E + ++++++F RPG +
Sbjct: 288 TETDDDHERSMDLLAEVRPEKINVTRFSKRPGTDAAEM 325
>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
Length = 432
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 194/379 (51%), Gaps = 26/379 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + + +AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ L + E + V + V E + E P
Sbjct: 65 ADETADLIVTGCMA-----LAQGEAFADADVDAQVLHWDDVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
++ +DTG YG D G LP LL I E+ +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFA 230
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
H +Y+FLH PVQSGSD VL+ M R++ +S +R +V+T + + ++TD I GFP E
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTE 290
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYK-----FTVML 414
D+D +++L++E + ++++++F RPG D+ EL L K T +
Sbjct: 291 DDDDHEASMDLLRETRPEKINVTRFSKRPGT-----DAAELKGLGGQTKKDRSKAMTELK 345
Query: 415 ISILVKLHYFSLDDQRNVL 433
+ ++ + H + +R+VL
Sbjct: 346 MDVVGEAHESMVGTRRDVL 364
>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
Length = 433
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 184/338 (54%), Gaps = 14/338 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
IY+KT+GC N++D+E MAG L+ G+ + D+ ++AD+ ++NTC V+ SQ SA+
Sbjct: 3 IYIKTYGCQMNENDTEIMAGILAQKGHQIVDDLDQADVVILNTCVVRQKSQDKYHSALGQ 62
Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
L+ K K LV ++GC + +G V G + I V EV+E G +V L
Sbjct: 63 LLKMKKEGKIKLVGISGCGANLEAEQLIKDGADFVLGSRSILAVAEVLERAASGEKVIYL 122
Query: 175 HRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ LP+ R + + I GC CTYC + RG S +E ++ V+ +
Sbjct: 123 EDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCTYCIVPYTRGREKSRPMEDVLAEVKKL 182
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
GVKE+ ++ AYG+D+ G +L L+N +E+ +G + + P I +
Sbjct: 183 AESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK-ASEI--EGIERIWFLTSYPTDITDE 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L I V ++P H+P+QSGS+ +L MNR YT F +V+ + ++VP I++D
Sbjct: 240 L--IETVAKNPKAAKSFHIPIQSGSNRILRLMNRRYTREQFAELVEKIRKIVPQASISSD 297
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+I GFP ET+ED QTV ++K +F +++++ + PRPG
Sbjct: 298 VIVGFPTETEEDHQQTVEIVKTLQFERLNLAIYSPRPG 335
>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
Length = 443
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 186/338 (55%), Gaps = 15/338 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ + +
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 174
K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + DL ++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-DLSRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFP ET+EDF +T++L+++ +F +++++ + PR G
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKG 334
>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
Length = 417
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 178/338 (52%), Gaps = 20/338 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L++ GC+ QG +E I+ + V E G
Sbjct: 65 EEETADLIITGCMALAQGEEFHEEDVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP I +E+ EV
Sbjct: 171 EIRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVEV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
RH +Y+F+H+PVQSGSD VL AM R++ + F +V+T E + ++TD I GFP
Sbjct: 229 FDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVETFDETLDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ET+ D Q++ L +E + +V++++F RPG ++
Sbjct: 289 TETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADM 326
>gi|150019979|ref|YP_001305333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
melanesiensis BI429]
gi|229891013|sp|A6LJ47.1|MIAB_THEM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|149792500|gb|ABR29948.1| RNA modification enzyme, MiaB family [Thermosipho melanesiensis
BI429]
Length = 430
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 183/337 (54%), Gaps = 17/337 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I++KT+GC N++DSE L GY +T+N +ADI ++NTC V+ S+ + I +
Sbjct: 4 IHIKTYGCQMNENDSEVAKFYLEEEGYEITNNENDADIVILNTCVVRKKSEDKFYSHIGE 63
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K K + + GC + ++ GV ++G + I + + VE + G + + K+
Sbjct: 64 LKKQNKIIGIMGCGAEKEKEKLFKRGVKFVIGTRAIPLIPQAVERAINGKKSAIFE-DKM 122
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D K+ R +K + I GC CTYC + RG S ++ ++ V + G
Sbjct: 123 DEIDYKKILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDIINEVENLAKSG 182
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILEHL 292
+KEV ++ AYG+D+ G +L LLN L D + RI +T+ P F L+
Sbjct: 183 IKEVTYLGQNVDAYGKDLNDGSSLAKLLN-----LTKDIEEIERIWFLTSYPTDFSLDIA 237
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+A + + +H+PVQ GS+ +L MNR YT+ ++ +++ + ++VP I++DI
Sbjct: 238 HEVANSSK---ITKNIHLPVQHGSNKILKKMNRRYTIEEYIELINDIRKIVPDASISSDI 294
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFP ET+EDF +TV L+K KF +++++ + PR G
Sbjct: 295 IVGFPDETEEDFEKTVELVKNIKFERLNLAIYSPREG 331
>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
Length = 436
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 174/341 (51%), Gaps = 15/341 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
E + T GC NQ D+E M +A Y L D S+EAD+++INTCTV ++
Sbjct: 2 ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ +VA GC PQ S ++ E++GV IVG + R+V++VE+ + E
Sbjct: 62 RRANRRNPQAIVAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNF 121
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R A D ++ +KF E L + GC C YC + RG + S +E V
Sbjct: 122 VRDISEAEDFEEIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G KE+ L+ GAYG+++ ++L LL ++ G +R+ +
Sbjct: 182 KRLAASGFKEIVLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEV 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L ++ C + LH+P+Q+GSD +L+AMNR+YT+ + V + +P + +
Sbjct: 239 TSDLIDLIATEEKLCRH--LHLPLQNGSDKILAAMNRDYTVQQYADKVAEIRSNIPQIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD++ GFPGETDEDF T LI+E F +H+ ++ R G
Sbjct: 297 TTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREG 337
>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
Length = 430
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 184/335 (54%), Gaps = 13/335 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC N++D+E L G+ + D+ +EADI ++NTC V+ S+ + + I K
Sbjct: 3 VHIYTYGCQMNENDTEIAKQLLLDGGFEVVDSEDEADIVILNTCAVRKKSEDKVYSHIGK 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K + + GCV ++ GVS ++G + I +V E V G + ++ L
Sbjct: 63 LRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLDDTL 121
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+D KV R +K + I GC CTYC + RG S +ES++ VRT++ G
Sbjct: 122 DEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLVEKG 181
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKE 294
KE ++ AYG+D+ G +L LL A++ DG L + P F LE +
Sbjct: 182 YKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEIPQA 238
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ E +P + +H+PVQ GSD +L AMNR YT ++ +++ + +VP I++DII
Sbjct: 239 MVE---NPKIAKSIHLPVQHGSDKILRAMNRRYTREEYIDLINNIRNIVPDASISSDIIV 295
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETDEDF TV L+K+ KF +++++ + PR G
Sbjct: 296 GFPGETDEDFEATVKLVKDIKFERLNLAIYSPREG 330
>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
Length = 459
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 185/370 (50%), Gaps = 18/370 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG L G D E+AD+ TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLF 405
+ ++TDII GFPGET +DF T L+ E + QV + R G ++D ++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 406 SNYKFTVMLI 415
+ V L+
Sbjct: 365 QRFDRLVDLV 374
>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
768-20]
gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
768-20]
Length = 416
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 186/338 (55%), Gaps = 33/338 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC ++D++ + L G A+ ++ +AD+ L+ TC V+ + + +
Sbjct: 3 IYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLGQ 59
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV-EETLKGHEVRLLHRKKL 179
S K LVVAGC+ + ++Q+ + E++ E ++G E R + L
Sbjct: 60 LASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS--VL 107
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 236
P D + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A
Sbjct: 108 PEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKAVAK 161
Query: 237 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
G KE++L+ +D YG D G NLP LL I++++ +G +RIGM+ P +
Sbjct: 162 GAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFGKFA 219
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 350
I +++ R VY + H+PVQSGSD VL M R YT ++R ++ + EL + +AT
Sbjct: 220 DAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGLISKIKRELNDDVFVAT 279
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
D+I GFPGET+EDF T+ L++E +F +VH++++ RP
Sbjct: 280 DVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRP 317
>gi|403252571|ref|ZP_10918880.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
gi|402812061|gb|EJX26541.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
Length = 434
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 14/337 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ K +++ GC Q S D K L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMILGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTV 233
P + K ++ + + GC CTYC + ARG + S +E +
Sbjct: 120 EPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEM 179
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 180 VMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND--- 233
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDI
Sbjct: 234 EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTDI 293
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGETD DF +T+ L+++ +F +VHI +F PRPG
Sbjct: 294 IVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPG 330
>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 434
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 187/348 (53%), Gaps = 29/348 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A GY + D +EADI++INTCTV + S I + K
Sbjct: 7 TLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKRAKKT 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S +VV GC PQ ++++++EGV I VG + +++VE V E LK +KK+
Sbjct: 67 SPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QKKKIL 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A++ + +R+ F E+ + I GC C+YC +ARG + S ++ S++
Sbjct: 120 AVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLSSILD 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
V+ + ++G KE ++ + AYG+D+ + + L ++ E+ + +R+ P
Sbjct: 179 EVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSLEPIV 236
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ E I +++ + LH+ +QSGSD +L MNR YT ++R +V+ + +
Sbjct: 237 MKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYWNDVA 294
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFPGE+DEDF +TV +KE F ++H+ +F P+ G N+
Sbjct: 295 FTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNM 342
>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
Length = 411
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 37/339 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y++T+GC ++D+E +A +L G D E+AD+ L+ TC V+ + I +
Sbjct: 3 LYVETYGCWLAKADAEIIARRL---GGTRVDRPEDADVVLMYTCAVREDGEIRQLKRIRE 59
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLLHRKK 178
A K L+VAGC+ + ++Q+ +++ E G E +
Sbjct: 60 L--ASKSLIVAGCLAKAR----------PYTIRQLAPSAQLIYPNEVEGGRE------RT 101
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIA 235
+ AL P + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A
Sbjct: 102 MSALPEPD---GSVIYTVPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVA 158
Query: 236 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +E++L+ +D YG D G NLP LL I+ E+ DG +RIGM+ P +
Sbjct: 159 KGAREIYLTGQDVITYGFDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKF 216
Query: 292 LKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIA 349
+ +I ++++ VY F H+PVQSGSD VL M R YT ++R +V + EL + IA
Sbjct: 217 VDQILDIVKSDERVYRFFHLPVQSGSDRVLRRMGRRYTAQEYRELVLKIKRELNDDVFIA 276
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
TDII GFPGET+EDF +T+ L++E F +VH++++ RP
Sbjct: 277 TDIIVGFPGETEEDFQETLKLMEELVFDKVHVARYSRRP 315
>gi|432332038|ref|YP_007250181.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
gi|432138747|gb|AGB03674.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
Length = 418
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 179/332 (53%), Gaps = 35/332 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++T+GC +N D+ + L G ++ D+ ++AD+ ++NTCTV P++ M ++
Sbjct: 23 VCIETYGCRYNFGDTAKLTEVLKHRGCSIADSVDDADVVIVNTCTVVGPTERRMLRRLSA 82
Query: 121 CKSAKKPLVVAGCVPQGSRD----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ + L V GC+PQ ++ + + ++ +Q+ R V V G
Sbjct: 83 LRD--RDLFVTGCMPQVQKEAILSVCDPGFIAPDAIQEWYRRVGTVAAGSVG-------- 132
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
I+ + GC G CTYC T+ ARG L S+ + + +V A
Sbjct: 133 ------------------IVQLAQGCNGTCTYCITRQARGPLRSFPLHEVRRQVAAYAAC 174
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++D +YG+DIG++L LLN I P GS +R+GM NP +++ L I
Sbjct: 175 GAAEIQLTAQDVSSYGKDIGLSLAGLLNDIGD---PPGSYCIRVGMMNPATVMDDLDAII 231
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ ++ FLH+PVQSGSD +L M R+YT+ DF ++ + P + + TD+I GF
Sbjct: 232 DAFSAERIFRFLHLPVQSGSDTILERMGRQYTVRDFCRIIAAFRKRYPEITVMTDMIAGF 291
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
PGET+EDF+ +++LI+ + +V+++++ RP
Sbjct: 292 PGETEEDFSASIDLIRRLRPNKVNVTRYSKRP 323
>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
Length = 414
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 183/346 (52%), Gaps = 24/346 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + L G+ + + EAD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRRIERSLRDAGHRPVEGTAEADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ +S L+V GC+ L + E + + VQ + E V + E
Sbjct: 63 ELESETADLIVTGCMA-----LAQGEAFADLDVQVLH--WEDVPSAVTNGECPTTTPDAE 115
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S T+E+ V + R ++ G K
Sbjct: 116 PILD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAK 168
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 169 EIRVTGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADV 225
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL AM R++ + FR VVDT + ++TD I GFP
Sbjct: 226 FADNRKLYDFIHAPVQSGSDEVLEAMRRQHRVGKFREVVDTFEGRLDHWTLSTDFIVGFP 285
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ET+ DF +++ L+ + + ++++++F RPG D+ E+ L
Sbjct: 286 TETEADFERSMALLADVRPEKINVTRFSKRPGT-----DAAEMKGL 326
>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
Length = 453
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 18/353 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++TFGC N+ DSE +AG G D EEADI TC V+ + + + +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMFEGLGALQVDTIEEADIVAFMTCCVREAADTRLYGQVA 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + V GC+ Q G + KEL+ + +V G + + +V ++
Sbjct: 69 SLKNVPLRTDSPLRKRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIE 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH V +L +LP R + + LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHHVEVLDAASSFPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + LR + LH+PVQSGSDAVL+AMNR YT + + +V L ++VP
Sbjct: 247 KDLTDEVIGKFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRAHYLELVRKLRDVVPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ ++TDII GFPGET +DF T L+ E + QV + R G +++ T
Sbjct: 305 IALSTDIIVGFPGETAKDFENTYRLVDEVGYHQVFTFIYSKREGTPAASMEDT 357
>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
Length = 417
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 19/337 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
A L V GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEATADLYVTGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAD 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 R-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ +S++ V+D + + ++TD I GFP
Sbjct: 229 AAYDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIDAFDDALEYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D +Q++ L++E + +V++++F RPG ++
Sbjct: 289 ETDRDHDQSMALLRETRPEKVNVTRFSKRPGTDAADM 325
>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
Length = 439
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 181/346 (52%), Gaps = 17/346 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KTFGC N+ DSE +A GY+LTDN EEA +INTC+V+ +++ + +
Sbjct: 3 LFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELGR 62
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K KK + V GCV Q G + L + V +V G IDR+ +++ KG +
Sbjct: 63 LKKFKKLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEKGERI- 121
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ L +P R K V + I GC C+YC + RG S ++ ++
Sbjct: 122 CDTSEGDDELSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSRKPSEILDEIK 181
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GVKEV L ++ +YG+ D +N P LL + +G +R ++P
Sbjct: 182 YLVNNGVKEVTLLGQNVNSYGKGLDEDINFPKLLYKV---HDINGLERIRFVTSHPKDFD 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L I + P V +LH+P+Q+GS+ VL MNR+YT ++R V E++P + ++
Sbjct: 239 DEL--IFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEMIPDLALS 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+D I GFPGET EDF +T+ IKE ++ + ++ PRP + N
Sbjct: 297 SDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNF 342
>gi|74193201|dbj|BAE20608.1| unnamed protein product [Mus musculus]
Length = 218
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 114/156 (73%), Gaps = 7/156 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVGCL 203
+KK LDLPK+R+N +EI+ IN G +
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGII 214
>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 445
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 177/348 (50%), Gaps = 21/348 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC NQ ++E +A GY + + S++AD+++INTCTV +I +
Sbjct: 4 VAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRR 63
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 168
K +VA GC Q S ++ +EGV +V G +VVE VE+ L
Sbjct: 64 AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ ++LP LD R L I GC CTYC +ARG + S ++++
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
++ +G +E+ L+ GAYGRD L A+VA+L G LR+G P
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ HL IA + + + LH+P+QSG DAVL MNR+Y +F +V+++ +V +
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAMVDDIA 295
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
I TDII GFPGETDE F+ T N +K F ++H+ ++ PR G N
Sbjct: 296 ITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANF 343
>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
17230]
gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
17230]
Length = 426
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 183/331 (55%), Gaps = 9/331 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
IY++T+GC+ N++D+ + L + D+ EAD+ ++NTC V+ ++ M + +
Sbjct: 3 IYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLEE 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K ++V+GC+ +R L ++ V+ V + + + E + + + +
Sbjct: 63 LSKTGKKIIVSGCM---ARALPIKIRSVNPKAVLLPPQSIHRIYEAINADDGYIFFDEIK 119
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+PK+ + +P+ GCL C++C K AR HL S +E++V V+ VI+ G
Sbjct: 120 TFTVMPKII-DGVKATIPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAI 178
Query: 240 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
E+ ++++D YG DI LP LL +I+ D ++RIG NP ++ +L
Sbjct: 179 EIEITAQDLSVYGYDIYGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIA 236
Query: 298 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+LR P VY +H+PVQSG++ VL AMNR++ + F ++ L + + G+QIATDII G P
Sbjct: 237 ILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISELRKKIEGIQIATDIIVGHP 296
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
GE +E F +V LI E +VHI+++ PRP
Sbjct: 297 GEDEEAFMDSVKLITENYIDRVHIARYSPRP 327
>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
Length = 442
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 180/342 (52%), Gaps = 23/342 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++KTFGC N +DSE MAG L GY EEADI ++NTC+V++ + + I
Sbjct: 5 FFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFIGN 64
Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVR 172
K KK + VAGCVPQ ++ + V +V G ++ +++E + G V
Sbjct: 65 LKRLKKRRPDLVVAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVE 124
Query: 173 LLHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+L+RK KLP +D N F+ + + GC CTYC RG S +V
Sbjct: 125 ILNRKIPEEEKLPLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVV 182
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ + GVKEV L ++ YG G +L LL +V+E+ +G +R ++P
Sbjct: 183 EEVKRLAERGVKEVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAG 238
Query: 288 ILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
E IA +R P V ++H+P QSGS+ VL MNR YT ++ V L E VP +
Sbjct: 239 FSER---IARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLREFVPNV 295
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ D I GFPGET+EDF QT++L++E F Q + ++ PRP
Sbjct: 296 ALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRP 337
>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP6]
gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 437
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 183/361 (50%), Gaps = 40/361 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++TFGC+ N +S+ +A L G+ + +EAD+ ++NTC V ++ + + +
Sbjct: 3 FYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKILRRLRQ 61
Query: 121 CKSAKKPLVVAGC----VPQGSRDL---------KELEGVSIVGV-------------QQ 154
+ + LVVAGC +PQ + L + + I G+ Q
Sbjct: 62 LEGER--LVVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWLMPSQHMQSGQ 119
Query: 155 IDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
+ EE L+ + + R+ P + I+ + GC G+C+YC A
Sbjct: 120 LQSQNFQSEEMLRERHIAVHLRESSPG--------GESCGIVNVADGCNGSCSYCIVSKA 171
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 274
RG L S VE +V V + G E+ +S++DT A+G DIG +L LL + E+P G
Sbjct: 172 RGRLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAFGSDIGSDLAGLLETLT-EIP--G 228
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
MLR+GM NP + E + P +Y FLH+PVQSGSD +L M R YT +F
Sbjct: 229 DFMLRVGMMNPDSARLIQNRLIEAFQSPKIYRFLHIPVQSGSDEILQRMGRVYTSDEFFE 288
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394
+V P + I TDII GFPGETD+DF ++++LI+ + +V+I++F PRPG +
Sbjct: 289 LVSAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRPGTSAAS 348
Query: 395 L 395
L
Sbjct: 349 L 349
>gi|392354291|ref|XP_003751729.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 212
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 112/154 (72%), Gaps = 7/154 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+CTVK+P++
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 115 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 174
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 175 HRKKLPA-------LDLPKVRRNKFVEILPINVG 201
+KK LDLPK+R+N +EI+ IN G
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTG 212
>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
Length = 403
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 188/338 (55%), Gaps = 30/338 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++ +T+GC+ N +D+ + + G + ++EAD +INTCTV + ++ AM + A
Sbjct: 9 VHFETYGCTFNYADTGKLMDIALSQGCKVVP-ADEADTVVINTCTVVAQTERAM--IRAV 65
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ + +VV GC+P +L + V+ R++ + E + H R+ H +
Sbjct: 66 QDYSDRDVVVTGCMPVVQAEL-------LRSVRPDIRII--LPEEIYRHSERIGHSVE-- 114
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
V ++ + GCLG+C+YC T+ ARG L S V +V +I++GV E
Sbjct: 115 ----------GGVGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHE 164
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ L+ +D AYG D G NL LL A+ AE+ +G +R GM NP +L +L EI +
Sbjct: 165 IQLTGQDVSAYGYDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFL 221
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
++ F+H+PVQSGSD VLS M R YT +DF +V + VP ++++TD+I GFP E+
Sbjct: 222 SDKIFKFIHIPVQSGSDRVLSDMGRGYTSADFERIVTEFRKKVPDIRVSTDLIVGFPTES 281
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQFLNL 395
+EDF +T+ ++K +V+I++F R P ++ ++
Sbjct: 282 EEDFKETLEMVKRVCPTKVNITRFSVRENTPAAEYKDM 319
>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
Length = 417
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 177/338 (52%), Gaps = 21/338 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D Q++ L++E + ++++++F RPG +
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEM 325
>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
Length = 434
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 181/337 (53%), Gaps = 14/337 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPGGD-ASYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ + +++ GC Q S D + L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPDEARNLPVDMILGIDEKKNIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTV 233
P + K ++ + + GC CTYC + ARG + S +E +
Sbjct: 120 EPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEM 179
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 180 VMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND--- 233
Query: 294 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDI
Sbjct: 234 EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDI 293
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGETD DF +T+ L+++ +F +VHI +F PRPG
Sbjct: 294 IVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPG 330
>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
Length = 451
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 184/349 (52%), Gaps = 26/349 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T+GC N+ DSE +AG L + G + E+A+I + TC ++ + + +
Sbjct: 7 KTFCLYTYGCQMNEHDSERIAGMLESHGAVQVSSVEQAEIAIFVTCCIREAADVRLMGQV 66
Query: 119 AKCKS---------AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEE 164
A K+ +K+ + + GC+ G RD ++L + G Q I+ +V ++E
Sbjct: 67 ASIKNIPLPQGSELSKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEA 124
Query: 165 TL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+ GH+V +L + +LP R + + LP+ VGC CTYC + RG S T
Sbjct: 125 AIIQGGHQVEVLDSSTSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRT 184
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRI 280
+E +V R ++ADGVKE+ L ++ +YGRD+ P + + VAE G LR
Sbjct: 185 LEDVVEEARGLVADGVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRF 240
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P + + E+ L + + LH+PVQSGSDA+L AMNR YT + +++ +
Sbjct: 241 ATSHPKDLTREVIELYGSLGN--LMPSLHLPVQSGSDAILKAMNRRYTAEHYLGLIEEVR 298
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++ P + +TDII GFPGET+EDF T +L++ + QV + R G
Sbjct: 299 KVNPDISFSTDIIVGFPGETEEDFQATYDLVERVGYSQVFTFIYSRREG 347
>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
Length = 426
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 170/328 (51%), Gaps = 22/328 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y +++GC+ +S++ ++ G L D+ E AD+ +I TC V ++ M I +
Sbjct: 29 VYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHMLKRIGE 88
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ ++V GC+ + + E E + ++ K E R +
Sbjct: 89 LSKKSRNVLVLGCLATVNGNTLESENIRVI----------------KPREFRSFY---TG 129
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD K++ ++ +PIN GC G C +C + +RG L S + E +VG+VR I G++E
Sbjct: 130 TLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLLSRSPEKIVGQVRMQIESGIRE 189
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
+ ++S DT AYG+DI +L L+N+I D MLR+GM P + L+++ + +
Sbjct: 190 IRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLRVGMMEPRNTYDILEKLIDAYK 246
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+ V+ FLH+PVQSG + +L +MNREY + + V+ E P M +TDII G+ E
Sbjct: 247 NDKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHVIKRFKEEFPDMVFSTDIIAGYYTED 306
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRP 388
E T I+ Y ++I++F PRP
Sbjct: 307 SESMENTYKFIETYMPDIINITRFSPRP 334
>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying protein [Thermotoga petrophila RKU-1]
gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
Length = 434
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 182/338 (53%), Gaps = 16/338 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLL 174
++ + +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 175 HRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
P + K ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVE 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 179 MVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND-- 233
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TD
Sbjct: 234 -EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTD 292
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGETD+DF +T++L+++ F +VHI +F PRPG
Sbjct: 293 IIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPG 330
>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
Length = 451
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 189/371 (50%), Gaps = 18/371 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ Y+ T+GC N+ DSE + G L A G TD E+++I + TC V+ + + +
Sbjct: 9 SFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAADVRLRGQVN 68
Query: 120 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ K+ + + GC+ Q G + + ++ V +V G Q I+R+ ++ L
Sbjct: 69 SIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLS 128
Query: 168 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
GH + + DLP R + + LPI VGC CTYC + RG S +ES
Sbjct: 129 RGGHIAEVQEESDTFSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIES 188
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V + ++A+GV+E+ L ++ +YGRD+ P + ++ + G LR ++P
Sbjct: 189 VVADAQALVAEGVQEITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + E L + + LH+PVQSGSDA+L M+R YT+ + ++D L P
Sbjct: 247 KDLTDEVIEAFGTLGN--LMPALHLPVQSGSDAILKRMHRSYTVEHYLGLIDKLRAACPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLF 405
+ ++TDII GFPGET+EDF T +L+++ + QV + PR G + S++
Sbjct: 305 ISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAKMKDDTPRSVIQ 364
Query: 406 SNYKFTVMLIS 416
++ V ++
Sbjct: 365 ERFERLVQMVQ 375
>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
Length = 434
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 182/338 (53%), Gaps = 16/338 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLL 174
++ + +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 175 HRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 232
P + K ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEFVE 178
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 179 MVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND-- 233
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TD
Sbjct: 234 -EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITTD 292
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGETD+DF +T++L+++ F +VHI +F PRPG
Sbjct: 293 IIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPG 330
>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
Length = 440
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 17/338 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + LVV GC+ + E GV +I EV L G E +
Sbjct: 63 ELEDETAELVVTGCMALAQGETFEEAGVDA----EILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+ EV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELVEV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFVHAPVQSGSDEVLEEMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ET+ D ++++L+ E + ++++++F RPG +
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAAEM 325
>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
IH1]
gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
IH1]
Length = 428
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 176/338 (52%), Gaps = 13/338 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ IY++ +GC+ N +D+ + + F + + N E+AD+ +INTC V+ ++ M +
Sbjct: 2 KKIYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISR 61
Query: 118 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH------- 169
I KS K +VVAGC+P+ R+ E G ++ ++ ++V + T H
Sbjct: 62 IKHFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNIGGNN 121
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ KL L P N + LPI+ GC+G CTYC K ARG L SY L+ +
Sbjct: 122 NSNVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNLLIKK 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
I GVK + ++S+DT YG D LP L+N I + DG +RIGM + +
Sbjct: 181 AEEFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHAKNVT 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + E+ ++ V FLH+P+QSG D VL M R YT+ +F +V+ V +
Sbjct: 238 QIMDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFIDIVNEFKRKVKDLNFN 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
TD+I GFP E +E+F T+ ++K+ +H +++ R
Sbjct: 298 TDVIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQR 335
>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
Length = 443
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/347 (34%), Positives = 182/347 (52%), Gaps = 20/347 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ G + Y+ T+GC N SDSE AGQL A GY +T++ + AD+ L+NTC V+ ++
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYHMTEDMDMADVILLNTCCVRETAEGKT 62
Query: 115 DTLIAKCKSAKK---PLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
I + K K+ LV+A GC+ Q +D + V +V G I ++ E+++
Sbjct: 63 LGKIGELKHYKERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQ 122
Query: 167 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
H L LPA DLP R +KF +PI GC CTYC H RG S ++
Sbjct: 123 GKHA--LAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQD 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-M 282
+V V+ + G KE+ L ++ +YG D+ G + L++A+ D + RI M
Sbjct: 181 IVAEVKALGRAGYKEITLLGQNVNSYGLDLKDGTDFSSLVDAL-----EDAKGVERIRYM 235
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
T+ P + K I + R V LH+PVQSGS+A L MNR YT+ + +VD E
Sbjct: 236 TSHPKDMTK-KMIDAIARSTRVVHHLHLPVQSGSNATLKRMNRGYTVEHYLELVDYAREK 294
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + + TD+I GFPGET+E F +T+ LI+ + + + PR G
Sbjct: 295 MPDLVLTTDMIVGFPGETEEMFQETLALIQRVGYDMAYTFIYSPRTG 341
>gi|397906230|ref|ZP_10507046.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
gi|397160689|emb|CCJ34381.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
Length = 433
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 179/341 (52%), Gaps = 24/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC N ++E MA GY + D + AD+++INTCTV + +I AK K
Sbjct: 8 TLGCRVNTYETEAMAETFIKNGYEVVDFDDYADVYVINTCTVTNIGDKKSRQMIRRAKKK 67
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKG-----HEVRLLH 175
+ +V GC Q +++++E V I VG + ++VE V+E LK H ++
Sbjct: 68 NNDAVVVAVGCYVQVAPEEVEKIEDVDIIVGTKDKGKIVEFVDEYLKNRKRIKHVENVMS 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ L++ + + +K L I GC C+YC +ARG + S E+++ V +
Sbjct: 128 IRHFEELEIDEYQ-DKTRAFLKIQDGCDRFCSYCLIPYARGPVRSRKPENILMEVEKLSR 186
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILE 290
+G KEV LS +YG+D+ VNL ++ I +G +RIG +P F I+E
Sbjct: 187 NGYKEVILSGIHVASYGKDLKDVNLIDVIEMIS---KVEGIERIRIGSVDPTFFNEEIIE 243
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
LK I + H H+ +QSG D L MNR YT S+++ +VD L E+ + I T
Sbjct: 244 KLKYIDKFCHH------FHLSLQSGCDETLRRMNRHYTTSEYKKIVDNLREVFEDVSITT 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
D+I GFPGETDE+F +T +KE K ++HI ++ PR G +
Sbjct: 298 DVIVGFPGETDEEFERTFEFLKEIKLSKMHIFKYSPRKGTK 338
>gi|222098978|ref|YP_002533546.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
neapolitana DSM 4359]
gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
DSM 4359]
Length = 443
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 186/341 (54%), Gaps = 21/341 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N++DSE MAG L G+ EEAD+ +INTC V+ S+ + +
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 120 --KCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
K K +K +V VAGCV + R+ L E ++G + + RV E V++ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 176 RKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
LD LP++R ++ + I GC CTYC + RG S + ++ V
Sbjct: 123 ----DHLDEYTHELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEV 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 179 KKLAEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDF 235
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + ++P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I
Sbjct: 236 SDELIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAI 293
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++DII GFP ET+EDF +TV+L+++ +F +++++ + PR G
Sbjct: 294 SSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREG 334
>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
Length = 406
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 15/324 (4%)
Query: 85 FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRD--LK 142
G+ L + EA + + NTCTVK ++ + I + + ++V GC+PQ D L+
Sbjct: 3 LGHRLV-SEREAKVIICNTCTVKDTTEQKILHKIKEWGLQGREVIVTGCMPQVQLDEILE 61
Query: 143 ELEGVSIVGVQQIDR---VVEVVEETLKGHEVR---LLHRKKLPALDLPKVRRNKFVEIL 196
V ++G+ + + ++ V E L+G+ +R + L++P+ R + + I
Sbjct: 62 NNPEVHVLGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVPRKRFSPNIHIC 121
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I+ GC C+YC ARG L S+ +S+V + + +G EVWL+S+D YG D
Sbjct: 122 QISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLTSQDNAQYGMDKE 181
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
++LP LL I A +P G +R+GM NP L L E+ VY LH+P+QS S
Sbjct: 182 IHLPALLERITA-IP--GDFRVRVGMMNPASTLGILDELLRAYSSEKVYKVLHLPIQSAS 238
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
D +L M R++T+ +V+ P + TDII GFPGE +EDF T++ I+ Y
Sbjct: 239 DKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEEDFELTLDWIRTYHP 298
Query: 377 PQVHISQFYPRP---GIQFLNLDS 397
+V+IS++ PRP +QF N+D+
Sbjct: 299 DKVNISRYTPRPHTEALQFRNIDT 322
>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-3-3Ab]
gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-3-3Ab]
Length = 453
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 181/342 (52%), Gaps = 19/342 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y TFGC N++DSE MAG L + GY ++ +AD+ L NTCT++ ++ + + +
Sbjct: 5 TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64
Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
K K+ L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L IA P V H+P Q+GSDAVL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQYMPEAT 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F +T+ L+++ F ++ + + PRPG
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPG 339
>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
Length = 417
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 17/336 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L V GC+ L + E GV + V E + E P
Sbjct: 65 ADETADLYVTGCMA-----LAQGEAFVNAGVDADVLHWDEVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFA 229
Query: 301 -HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y FLH PVQSGSD VL M R++ +S++ VV+T + +P ++TD I GFP E
Sbjct: 230 DNEELYDFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDALPYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD D Q++ L++E + ++++++F RPG ++
Sbjct: 290 TDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADM 325
>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
Length = 416
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 183/336 (54%), Gaps = 31/336 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDKVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I GFPGE ++DF ++V L++E + +VH+++F PRP
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRP 318
>gi|351710010|gb|EHB12929.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
glaber]
Length = 279
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 97/113 (85%)
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VV
Sbjct: 1 MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCMADFKRVV 60
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D L + VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPG
Sbjct: 61 DFLKKKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPG 113
>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
13514]
Length = 416
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 183/336 (54%), Gaps = 31/336 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G + E+AD+ +I TC V+ + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 238
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 239 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 295 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 352
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDRVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I GFPGE ++DF ++V L++E + +VH+++F PRP
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRP 318
>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
Length = 417
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 181/346 (52%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
mobilis SJ95]
gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
Length = 439
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 174/338 (51%), Gaps = 11/338 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y++TFGC N ++SE MAG L G+ T+N +EADI LIN+C V+ +++ M I
Sbjct: 3 FYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIGG 62
Query: 120 --KCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K K L+ V GC + R+ L+ + + V G + + + +V+ L G
Sbjct: 63 YGKLKDENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALNGKRFA 122
Query: 173 LLHRK-KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
K D+PK+ +K + I GC C+YC + RG S +E ++ V
Sbjct: 123 DFSDKLNDVNYDIPKMPISKHHAWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVE 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G KE+ ++ +YG+D G L I D + + P I +
Sbjct: 183 SYAKKGYKEITFLGQNVDSYGKDFGDKKSKLDLLIQKAAEFDSIKRIWFLTSYPSDITDS 242
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L I V ++ H+P QSGS+ +L AMNR+YT +F +V+ + + V + +++D
Sbjct: 243 L--IQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKVKKEVANVTVSSD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFP ETDEDF +TV+LIK+ +F +++I+++ PR G
Sbjct: 301 FITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREG 338
>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|123502140|sp|Q2JKY0.1|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 444
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 19/342 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T Y TFGC N++D+E MAG L + GY T++ +AD+ L NTCT++ ++ + + +
Sbjct: 5 TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64
Query: 120 -----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
K K+ L+VAGCV Q G + L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHS---VEGIERIRFATSHPRY 239
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L I P V H+P Q+GS+ VL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQYMPEAA 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F +T+ L+++ F QV+ + + PRPG
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPG 339
>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
gi|418045000|ref|ZP_12683096.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|14916854|sp|Q9WZT7.1|MTAB_THEMA RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678082|gb|EHA61229.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 434
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 180/336 (53%), Gaps = 12/336 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+C V + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 175
++ K +++ GC Q S D K L ++G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 176 RKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTV 233
P + K ++ + + GC CTYC + ARG + S +E +
Sbjct: 120 EPGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFAEM 179
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+ G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + + +
Sbjct: 180 VMKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDEI- 235
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TDII
Sbjct: 236 -VKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDII 294
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGETD DF +T+ L+++ +F +VHI +F PRPG
Sbjct: 295 VGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPG 330
>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
Length = 455
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 178/346 (51%), Gaps = 21/346 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N D+E ++G L A G ++++ADI + TC+V+ + +
Sbjct: 10 KTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 119 AKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ SA P + + GC+ Q G + +++ V +V G + + ++ +G
Sbjct: 70 SAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGE 129
Query: 170 EVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
R+ K + DLP R ++ +PI GC CTYC + RG S T E+
Sbjct: 130 NDRVAVDISEEGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
++G ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VIGECERLVADGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSS 245
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
NP + + + IA + P V LH+ VQSGS VL MNR YT ++ VV L +
Sbjct: 246 NPKDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVVSRLRAAI 303
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
PG+ ++TDII GFPGET+EDF +T++L+KE + + + RPG
Sbjct: 304 PGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPG 349
>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
Length = 450
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 179/339 (52%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELAE 226
Query: 298 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAANEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P ET+ D +++++L+ E + ++++++F RPG ++
Sbjct: 287 PTETEADHDRSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
Length = 447
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 188/354 (53%), Gaps = 26/354 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY ++ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEEDPYLADLVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ +G++V +
Sbjct: 70 AKRKQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
T+ A G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 TLAAQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKAMSRGYTHEKYRRIVDKIRHY 302
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+P I+ D I FPGET+E F T+ L+ + +F Q++ + + PRPG N +
Sbjct: 303 LPDAAISADAIVAFPGETEEQFQNTLKLVDDVEFDQLNTAAYSPRPGTPAANWE 356
>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
Length = 434
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 182/343 (53%), Gaps = 28/343 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ ++TFGC NQ +SEYMA QL GY + + EA ++IN+C V + + L+
Sbjct: 3 TVRIETFGCKVNQYESEYMAEQLEKAGYTVLP-AGEASYYIINSCVVTQEVEKKVKRLVK 61
Query: 120 --KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
+ K+ +++ GC Q + K+L ++G+ + +V+ H + L
Sbjct: 62 SIRRKNRDAKIILTGCFAQLFPEEAKKLPVNMVLGISEKKNIVD--------HLLSLNGE 113
Query: 177 KKL--PALDLP---KVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLV 227
+KL A D P KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 114 QKLVVSAPDSPVYEKVKGSFEDRTRAYIKVEDGCDNGCTYCAIRFARGTKVRSKPLELFK 173
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++ G KE+ ++ + G YG+DIG L LL IV +P G +R+ N
Sbjct: 174 EEFEKMVIKGYKEIVITGVNLGKYGKDIGTTLVDLLK-IVEHVP--GDYRVRLSSLNVED 230
Query: 288 ILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I + E+ EV R +P + LH+ VQSGSD VL M R Y+ SDF VV+ L + P
Sbjct: 231 ITD---ELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSINPDF 287
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I TDII GFPGETDEDF +TV L++E +F +VHI ++ PRPG
Sbjct: 288 SITTDIIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPG 330
>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
Length = 446
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 173/346 (50%), Gaps = 22/346 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
PG T T GC NQ +++ +AG A GYA+ AD++++NTCTV S
Sbjct: 3 PGEPTAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSR 62
Query: 116 TLIAKC--KSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
I K ++ +VV GC Q + D ++ +EGV IV G + +V++VEE + E
Sbjct: 63 QAIRKANRQNPDAVVVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGET 122
Query: 172 --------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R+ ++LPA R++ + I GC CTYC +ARG + S +
Sbjct: 123 VNTVYDSCRIERFEELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRI 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
ES+V + +G KE+ LS GAYG D +L L+ + +P G +R+G
Sbjct: 179 ESVVEEATRLTGEGFKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSV 235
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P E E+ E + HP V H+P+QSGSDAVL M R Y DF V + +++
Sbjct: 236 EP---QEFTPELLEAVVHPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMI 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
PG+ I +D+I GFPGE + D+ + L + +H+ + PR G
Sbjct: 293 PGVAITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRG 338
>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 451
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 179/338 (52%), Gaps = 19/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N++DSE +AGQL GY+ TD E+AD+ LINTC V+ ++ + I + K
Sbjct: 22 TYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKIGELKRL 81
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLL 174
K + V GC+ Q RD + V +V G + ++ ++++E + + + +
Sbjct: 82 KTVNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVLAVW 141
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ + A D+P VR+++ +PI GC CTYC + RG S + ++ VR +
Sbjct: 142 DQAERLAPDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVRQLG 201
Query: 235 ADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEH 291
+G KE+ L ++ +YG+D ++ LL A+ T+ RI MT+ P + +
Sbjct: 202 TEGFKEITLLGQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRDM-N 255
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
K IA + + H+PVQSGSD VL MNR YT +R +V+ + +P I TD
Sbjct: 256 AKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRSEIPHASITTD 315
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGETDE F QT++ ++ +F + + PR G
Sbjct: 316 IIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSG 353
>gi|406888093|gb|EKD34682.1| hypothetical protein ACD_75C02237G0006 [uncultured bacterium]
Length = 461
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 188/363 (51%), Gaps = 37/363 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
++KTFGC N+ DSE MA LS +GY EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FFIKTFGCQMNERDSEIMAQSLSGYGYIEGMEMNEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 120 ----KCKSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK-GHEV 171
K K + VAGCV Q G+R L + V +VG Q I + +++ K G V
Sbjct: 66 LRKTKLKRPAMKICVAGCVAQQEGNRLLDRMPHVDLVVGTQNIYNIGPLLQRAEKDGSRV 125
Query: 172 RLLHR------KKLPA-------------LDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
R K LPA + V+ +KFV I+ GC CTYC
Sbjct: 126 VTELRDDYAIPKFLPAFSPMTTDQAGSDRITPSSVQFSKFVTIMQ---GCNNYCTYCVVP 182
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAE 269
+ RG S V+ ++ V ++ GVKE+ L ++ +YG+ V P + ++ E
Sbjct: 183 YTRGREISRNVDDIIEEVNILVKAGVKEITLLGQNVNSYGKANAVTADRRPYNFSDLLRE 242
Query: 270 LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+ +G LR +NP + + L + +R+ C H+PVQSGS+ +L +MNR+YT
Sbjct: 243 VSSVEGLARLRFTTSNPKDLTDALMKSFRDVRNLCPQ--FHLPVQSGSNRILKSMNRKYT 300
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ + V+ L E +PG+ + TDII GFPGE+DEDF T+NL+++ +F ++ RP
Sbjct: 301 AAQYLEKVEKLREYMPGIALTTDIIVGFPGESDEDFQDTMNLLEDIRFHGSFSFKYSDRP 360
Query: 389 GIQ 391
G Q
Sbjct: 361 GTQ 363
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L+ G+ TD++EEADI L+NTC V+ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q +R L++ + V ++ G I R+ ++++E + G E
Sbjct: 131 LKQLKREKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK+R K + I GC CTYC + RG S E ++
Sbjct: 191 RVVEVWSKEGDVIENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIID 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRDLARQGYKEITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M+R+YT + +V + E +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMDHIHLPVQSGSTEMLKIMSRKYTREQYLELVRKIKEAIPNVSL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFP ETDE F T++L +E ++ + + PR G
Sbjct: 368 TTDLIVGFPNETDEQFEDTLSLYREVEYDSAYTFIYSPREG 408
>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
Length = 417
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 184/346 (53%), Gaps = 25/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ + E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTERNMVRRAKEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+S L++ GC+ QG E I+ + V E G V
Sbjct: 65 QSETADLIITGCMALAQGDEFRTEDVDAQIMHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQV 228
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+F+H PVQSGS+ VL M R++ + ++ +V+T E + ++TD I GFP
Sbjct: 229 FAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVETFDEYLDYWTLSTDFIVGFP 288
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD+D Q++ L++E + ++++++F RP N D+ ++ L
Sbjct: 289 TETDDDHEQSMALLRETRPEKLNVTRFSKRP-----NTDAAKMKGL 329
>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
Length = 400
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 170/329 (51%), Gaps = 24/329 (7%)
Query: 61 IYMKTFGCSHNQSDSE-YMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY +++GC+ +S+S Y+ L + ++ EEAD+ LI TC V ++ M I+
Sbjct: 3 IYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRIS 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ V GC+ + + E V + LK E R + L
Sbjct: 63 SLSKVSGNVQVLGCLATVNGNTIESGNVQV----------------LKPREFRSFYEGDL 106
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
+++ ++ + +PIN GC G+C +C + ARG L S ++ +V +V + +K
Sbjct: 107 DGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGIDKIVNQVNMELDRNIK 162
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ +SS DT AYG+DIG +L L+N I + D LR+GM P + L ++ +
Sbjct: 163 EIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGMLEPRNTYDILDKLVDAY 219
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
RH V+ FLH+PVQS + VLSAMNREYT+ + V + P M IATDII G+ +
Sbjct: 220 RHDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQKFHDAFPDMSIATDIILGYYND 279
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ F +T+ +++Y +++++F PRP
Sbjct: 280 SRAGFEKTMKFLEKYNPDIINVTRFSPRP 308
>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
Length = 433
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 14/341 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G GY D E+ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMRGLFIQSGYTPVDFDEKADIYVINTCSVTNMGERKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
K K + ++V GC Q + ++GV++V G RVVE+VE+ L+ E
Sbjct: 62 RKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQIS 120
Query: 171 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
VR ++ + + L +K + I GC CT+C + RG L S VE +V
Sbjct: 121 IVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDIVK 180
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ ++ G E+ L+ G YG ++ + P L + + A L G +R+G +
Sbjct: 181 EAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESVEV 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L ++ + + P + LH+P+Q+GSD +L MNR Y L +F+ ++ L +PG+ I
Sbjct: 240 SEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNRHYNLQEFKDLIARLRSRIPGLAI 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFPGETDEDF +T+ ++E F +H + R G
Sbjct: 298 TTDIIAGFPGETDEDFEETMRTVEEIGFTHIHAFPYSKREG 338
>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
Length = 442
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 188/342 (54%), Gaps = 29/342 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
TE I + T GC N DSE M+G + GY L +N E+A + ++NTC + + + +++T
Sbjct: 2 TEKIKIVTLGCDKNLVDSEIMSGLIYERGYELVENEEDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K + K L+V+GC+ Q ++ + E++G IVG D++ ++V+E L+
Sbjct: 62 ILRLADLKETAELKALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQ 119
Query: 168 GHE-VRLLHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + +R+ + P D LP KV ++ + I GC CT+C RG S
Sbjct: 120 GSKPIRVGN----PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 175
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
T+ES++ V + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 176 TMESILAEVAQLAEQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVR 232
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ P F E L + + +P + ++ +P+Q D++L M R D R +V+ +
Sbjct: 233 LHYAYPGFFTEELMDT--IASNPKICKYIDMPLQHSEDSILKRMRRPGRQRDSRELVNKI 290
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
E +PG+ + T II GFPGETDEDF++ + I+E KF ++ +
Sbjct: 291 RERIPGVALRTSIIVGFPGETDEDFDRLCDFIREMKFDRLGV 332
>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
Length = 424
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 23/340 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ + + AD+ ++NTCTV +++ M
Sbjct: 3 SYHIETYGCTANRGESREIERRLRDGGHHPAEGPKAADVAILNTCTVVEKTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLLHRK 177
+ + LVV GC+ + + G ++ VV E T G E
Sbjct: 63 ELEEETADLVVTGCMALAQGEQFADVDARVCGWDEVPEVVRNGECPTTAPGTE------- 115
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 116 --PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
EV + +Y FLH+PVQSGSD VL AM R++ + +FR VV+T + +ATD I G
Sbjct: 224 EVFAENEKLYDFLHIPVQSGSDDVLGAMRRQHQVREFREVVETFDAHLDHWTLATDFIVG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
FP ETD D ++ L++E ++++++F RPG ++
Sbjct: 284 FPTETDADHEASMELLRETTPERINVTRFSKRPGTDAADM 323
>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
olearia TBF 19.5.1]
gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
Length = 440
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 182/352 (51%), Gaps = 41/352 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I +TFGC N +D+E MAG L + GY + DN EEAD+ ++NTC V+ ++ + + +
Sbjct: 3 IAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGR 62
Query: 121 CKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VR 172
+S KK + V+GCV + ++ LK E + G + I RV E +E +KG V
Sbjct: 63 LRSLKKKNRNLIIGVSGCVAEKEKEALLKREEVNFVFGTRSISRVNEFLERAIKGERFVE 122
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L P++R ++ + I GC C+YC + RG S ++E ++ V+
Sbjct: 123 LSDFIDEINSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKR 182
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ + G +EV ++ +YG+D+ DGST+ + + +E +
Sbjct: 183 LASKGYREVTYLGQNVDSYGKDLA----------------DGSTLAK--LIRETLKIEQI 224
Query: 293 KEIAEVLRHPCVYS---------------FLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+ I + +P +S +H+P+QSGS+ +L AMNR YT ++ ++
Sbjct: 225 ERIWYLTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIR 284
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ VP I+TDII GFPGE+++D+ QT +L++E F +V+++ + PR G
Sbjct: 285 RIRTKVPDASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREG 336
>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
Length = 447
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 173/339 (51%), Gaps = 15/339 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+ DSE MAG + GY + EEAD+ L+NTC V+ +++ + L+
Sbjct: 11 YIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLGSL 70
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K+ L V GC+PQ E++ IVG + ++ E +G V
Sbjct: 71 GRLKQRRPWLLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVV 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ ++ LP R ++ +PI GC CTYC + RG S E ++ V+
Sbjct: 131 AVSPEEQEIVEGLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 290
+ +G +E++L ++ AYG+ G+ P+ ++ +L +G +R ++P E
Sbjct: 191 ELAKEGYREIFLLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGE 248
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L I V P V H+PVQ+GSD +L M R YT D+ +V + E++P +T
Sbjct: 249 DL--IRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIREVLPQASFST 306
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DI+ GFPGET+EDF QT+ L++E F Q I + PRPG
Sbjct: 307 DIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPG 345
>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
Length = 417
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 28/347 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGDRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
P ET+ D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 287 PSETERDHEQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
Length = 451
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 179/341 (52%), Gaps = 20/341 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G TD+ +AD+ L NTC+++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQAKR 71
Query: 125 KK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K+ LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V +
Sbjct: 72 KQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQV--VAT 129
Query: 177 KKLPAL-DLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ L + D+ K RR V + I GC C+YC + RG S T E++ G + +
Sbjct: 130 ESLHIMEDITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEMEVLA 189
Query: 235 ADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
G KEV L ++ AYGRD+ G +L L + + +G LR ++P +
Sbjct: 190 QQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSHPRYF 249
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L + + L P V H+P QSG + +L AM R YT + +++ + +P I
Sbjct: 250 TERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDAAI 307
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ D+I GFPGET+ F T+NLI+E F ++ + + PRPG
Sbjct: 308 SADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPG 348
>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
Length = 417
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 174/332 (52%), Gaps = 21/332 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VVDT + + ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVQEYLEVVDTFDDTLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ETD D Q++ L++E + ++++++F RPG
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPG 319
>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
Length = 447
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 180/333 (54%), Gaps = 12/333 (3%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++TFGC+ ++ DS M LS GY T+ +ADI ++NTC V+ +++ + + +
Sbjct: 17 YIETFGCALSEFDSSTMDSILSQNGYVKTEYPNDADIIIVNTCAVRLDTEAKIMKRLNEI 76
Query: 122 KS--AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K+ L+V+GC+ + + + S+V Q ++++VV+ + V + +
Sbjct: 77 KNYYGNARLIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKS--ENKVVLIEGNR 134
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
+ P + + V + I GC+ C++C TK AR L SY ++ ++ ++ G
Sbjct: 135 DTDFMPTPPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEKG 192
Query: 238 VKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
VKE+ L+ +D AYG D L L+N I+ ++ G +RIGM P +E + +
Sbjct: 193 VKEIRLTGQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDNL 250
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E+ + ++ F H+PVQSG + +L MNR Y++ +++ + + + P ATDII G
Sbjct: 251 LELYKDERIFKFFHIPVQSGDNNMLKIMNRNYSIEEYKYLHNKIKSKYPNSLFATDIIVG 310
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
PGE +E F TV L+KE +F +V+++Q+ RP
Sbjct: 311 HPGENEEAFQNTVKLVKELRFERVYLAQYSIRP 343
>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
Length = 447
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 186/347 (53%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L A GY D+ AD+ + NTCT++ ++ + + +
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEDDPYLADVVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KSA L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ +G+++ +
Sbjct: 70 AKRKQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-V 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 ILAEQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKAMSRGYTHEKYRRIVDKIRHY 302
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+E F T+ L+++ +F Q++ + + PRPG
Sbjct: 303 LPDAAISADAIVGFPGETEEQFQNTLRLVEDVEFDQLNTAAYSPRPG 349
>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
Length = 458
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 185/367 (50%), Gaps = 30/367 (8%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC NQ DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEVKDSNIKYFTTY--TYGCQMNQHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSDA+L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVINTILNSKKICDHFHLPVQSGSDAILKM 292
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNR YT +R +V + + +P + TDII GFPGE+DE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGESDELFQETLEFLKEIRFDASYTF 352
Query: 383 QFYPRPG 389
+ R G
Sbjct: 353 LYSKRSG 359
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 191/346 (55%), Gaps = 19/346 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS-PSQSAMDT 116
++ ++KTFGC N +DSE + G L GY TDN EEAD+ ++NTCT++ P Q +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 117 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 169
L K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G+
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ + L + + + P R NK+ + I GC CTYC RG S + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
++ V+ ++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 285 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + + + E +A++ P V + LH+P Q+GS+ +L+ M+R YT ++ ++ L E V
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKV 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ ++TD+I GFP ET+EDF T++++K+ +F QV +F PRPG
Sbjct: 297 KDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPG 342
>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9303]
gi|229890600|sp|A2CB74.1|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9303]
Length = 480
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 177/345 (51%), Gaps = 20/345 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRP 370
>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
Length = 417
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 21/338 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D Q++ L++E + ++++++F RPG N+
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAANM 325
>gi|438002158|ref|YP_007271901.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
gi|432178952|emb|CCP25925.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
Length = 435
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 20/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ +S +A GY + D +AD+++INTC V + S +I K
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 68 NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 296 AEVLRHPC----VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E L+ C + HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKICHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+I GFPGET+E+F QT N IKE F ++H+ F PR G
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKG 338
>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
Length = 440
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/338 (33%), Positives = 179/338 (52%), Gaps = 17/338 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ ++ LVV GC+ + E V +I EV L G E +
Sbjct: 63 ELEAETAELVVTGCMALAQGEAFEEADVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE+ V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
R+ +Y F+H PVQSGSD VL M R++ + FR VV T + + ++TD I GFP
Sbjct: 228 FARNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVATFDDRLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
E++ D ++++L+ E + ++++++F RPG ++
Sbjct: 288 TESEADHERSMDLLTEVRPEKINVTRFSKRPGTDAADM 325
>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
Length = 440
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 177/348 (50%), Gaps = 37/348 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ L + E + V + +LH ++
Sbjct: 63 ELSETTAELVVTGCMA-----LAQGEMFADADV-----------------DAEILHWDEV 100
Query: 180 PAL----DLPKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
PA + P V + V +LPI GC+ C+YC TK A G + S V V +
Sbjct: 101 PAYVLNGECPTVTPDAEPVLDGVVGLLPIARGCMSNCSYCITKFATGRVDSPPVAENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R ++ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I
Sbjct: 161 ARALVHAGAKEIRVTGQDTGVYGWDDGDRKLPELLDRI---CDIDGEFRVRLGMANPGGI 217
Query: 289 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+E+AEV + +Y F+H PVQSGSD VL M R++ + FR VVDT E +
Sbjct: 218 HGIHEELAEVFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVDTFDERLDHWT 277
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
++TD I GFP E++ D ++++L+ E + ++++++F RPG ++
Sbjct: 278 LSTDFIVGFPTESEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9313]
gi|81577894|sp|Q7V8L8.1|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 480
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 177/345 (51%), Gaps = 20/345 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLLEEVGFDQVNTAAYSPRP 370
>gi|383830897|ref|ZP_09985986.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
gi|383463550|gb|EID55640.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
Length = 502
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 179/354 (50%), Gaps = 23/354 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + E+ DI ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDIVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKSAKPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILESLQTFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
V ++A+GV EV L ++ +YG + G L A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRL-----AFGKLLRSCGSVEGLERVRFTSP 236
Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
F + + +AE V LH+P+QSGSD VL AM R Y S F +++D + +
Sbjct: 237 HPAAFTDDVIDAMAETSN---VCHQLHMPLQSGSDRVLKAMRRSYRSSRFLSILDRVRDA 293
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+P I TDII GFPGETDEDF QT++++++ +F Q+ PRPG +D
Sbjct: 294 MPDAAITTDIIVGFPGETDEDFEQTLDVVRQARFSSAFTFQYSPRPGTPAAEMD 347
>gi|443478976|ref|ZP_21068653.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
gi|443015642|gb|ELS30506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
Length = 453
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 179/346 (51%), Gaps = 22/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T+ SEEAD+ L NTC+++ ++ + + + +
Sbjct: 10 HIVTFGCQMNKADSERMAGVLEDMGYHSTEESEEADLILYNTCSIRDNAEQKVYSYLGRQ 69
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G L+ + + +V G Q ++R+ ++E+ G++V
Sbjct: 70 AKRKRDNPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLGHLLEQVFNGNQVAA 129
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ RRN V + I GC CTYC RG S T ES+ +
Sbjct: 130 TEEAYIEE-DITTPRRNSSVAAWVNIIYGCNENCTYCIVPSVRGREQSRTPESIRQEIEK 188
Query: 233 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+ A G KE+ L ++ AYGRD+ GV I ++ + +G +R ++
Sbjct: 189 LAAQGYKEITLLGQNIDAYGRDLPAGGIGAGVGGKITFTDLLYYVHDIEGIDRIRYATSH 248
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + L K AE+ P + H+P QSG + +L AM R YT +R +++ + E++
Sbjct: 249 PRYFSSRLIKACAEL---PKICEHFHIPFQSGDNDILKAMARGYTHERYRRIIEDIREIM 305
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I D I FPGET+E F +TV L+ + F V+ + + PRPG
Sbjct: 306 PDAAITADAIVAFPGETEEQFERTVQLVNDIGFDLVNTAAYSPRPG 351
>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7424]
gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
Length = 454
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 183/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +D+ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + +L AM R YT +R ++D + E +
Sbjct: 245 HPRYFTERL--IVACKELPKVCEHFHIPFQSGDNDLLKAMKRGYTHERYRQIIDKIREYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPG 348
>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
Length = 428
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 171/331 (51%), Gaps = 30/331 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I ++TFGC++N DS+ +A L+A G + + E A++ +INTC V + ++ M I+
Sbjct: 31 ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90
Query: 121 CKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ + V GC+P L+E V ++ I R V KG
Sbjct: 91 YPDHE--VYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP---------- 138
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
V ++ I GC+G+C YC T+ ARG + S + + + + + G
Sbjct: 139 -------------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAV 185
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ L+ +D AYG D G +L LL I A PD T +R+GM NP + + +A
Sbjct: 186 EIRLAGQDLSAYGHDTGQWSLATLLEGIPAL--PD-ITRIRLGMMNPATLKPIAQRVART 242
Query: 299 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ + +SFLH+P+QSGSD VL M R YT++D + ++D + + IATDII GFPG
Sbjct: 243 MNNGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEMSDITIATDIITGFPG 302
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
ETD+D +TV LI+ V+++++ RPG
Sbjct: 303 ETDDDHEETVRLIRRIAPGMVNVTRYSWRPG 333
>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying protein [Tepidanaerobacter acetatoxydans
Re1]
gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter acetatoxydans
Re1]
Length = 435
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 175/338 (51%), Gaps = 20/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ +S +A GY + D +AD+++INTC V + S +I K
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + ++
Sbjct: 68 NPSAKVAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 128 QQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSLAK 186
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 187 DGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAMELT 240
Query: 296 AEVLRHPC-VYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E L+ C + F HVP+QSG D VL MNR YT +FR +D + +L+P I TD
Sbjct: 241 DEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASITTD 300
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+I GFPGET+E+F QT N IKE F ++H+ F PR G
Sbjct: 301 VIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKG 338
>gi|15643418|ref|NP_228462.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
maritima MSB8]
gi|418045177|ref|ZP_12683273.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|81553183|sp|Q9WZC1.1|MIAB_THEMA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|4981175|gb|AAD35737.1|AE001738_17 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678259|gb|EHA61406.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 443
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 184/338 (54%), Gaps = 15/338 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N++DSE MAG L G+ + EEAD+ +INTC V+ S+ + + +
Sbjct: 3 FYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 121 CKSAKKPLV----VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL- 174
KK VAGCV + R+ +G V G + + RV E V++ L+G +V L
Sbjct: 63 VLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 175 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L E+ + ++P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFP ET+EDF +TV+L+++ +F +++++ + PR G
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREG 334
>gi|402312108|ref|ZP_10831038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
gi|400370769|gb|EJP23751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
Length = 475
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 178/339 (52%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ V +V G I ++ E++ E T K V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQVVN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ ++ LP R F + I GC C+YC + RG S E ++ +R
Sbjct: 161 VMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIRG 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + C + LH+P+QSGS A+L MNR YT + +V + +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGET+EDF T++++KE ++ + R G
Sbjct: 336 DIIVGFPGETEEDFLDTLDVVKEVRYDSAFTFIYSKRSG 374
>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Ornithinibacillus scapharcae TW25]
Length = 525
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 177/339 (52%), Gaps = 15/339 (4%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG LS GY T + EAD+ L+NTC ++ +++ + I K
Sbjct: 86 IRTYGCQMNEHDTEVMAGILSEMGYESTTETSEADLILLNTCAIRENAENKVFGEIGHLK 145
Query: 123 SAK--KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP L V GC+ Q R +K+ + + +V G I R+ +V+E + G E
Sbjct: 146 PLKTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQV 205
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S + ++ +
Sbjct: 206 VEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEI 265
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A+G +EV L ++ AYG+D ++ ++ ++ +R ++P +
Sbjct: 266 RHLAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDD 324
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
HL E+ + + + +H+PVQSGS VL MNR+YT D+ VV + E +P + T
Sbjct: 325 HLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNRKYTREDYLEVVRKIREAIPNATLTT 382
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFP ETDE F +T+ L++E F + + PR G
Sbjct: 383 DIIVGFPNETDEQFEETMTLVEEVGFEAAYTFIYSPREG 421
>gi|374339750|ref|YP_005096486.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
gi|372101284|gb|AEX85188.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
Length = 450
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 183/340 (53%), Gaps = 14/340 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA- 119
Y+KTFGC N ++SE M G L G+ T+N +EAD+ ++N+C V+ +++ + I
Sbjct: 3 FYIKTFGCQMNVNESEIMTGILEKEGFEWTENPQEADVIILNSCAVREKAENKLYGAIGS 62
Query: 120 --KCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K K K+ L++A GCV + ++ ++ V+ V G + + + ++ + +
Sbjct: 63 YGKLKKKKEDLIIAVGGCVAEKEKENIIQRFHEVNFVFGTRNYMNIKKFIDRAKRSKKRF 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V L + DLPK +K + I GC CTYC + R S VE ++ V
Sbjct: 123 VDLSDEIDKISADLPKHPYSKHHGWINIIYGCNKYCTYCIVPYTRHLEKSRPVEDIIKEV 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 289
+ +G +E+ ++ +YG+D G P LN ++ E D + + P I
Sbjct: 183 KYYNDNGYREITFLGQNVDSYGKDFGDGKP-KLNILIKEAAKYDSIERIWFLTSYPSDIT 241
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L I EV +P H+PVQ+GS+ +L AMNR+YT + +++ + + VP + I+
Sbjct: 242 DDL--IEEVANNPKAAKNFHLPVQAGSNNILRAMNRKYTREYYLELLEKIKKTVPKVTIS 299
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+DII GFPGETDEDF +TV L+K+ ++ +++++++ PR G
Sbjct: 300 SDIIVGFPGETDEDFEETVELVKKARYERLNLAEYSPREG 339
>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
Length = 450
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 175/339 (51%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I E+A+
Sbjct: 170 KELRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P E DED +++L+ E + ++++++F RPG +
Sbjct: 287 PTEDDEDHELSMDLLAEVRPEKINVTRFSKRPGTDAAEM 325
>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
E43]
gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 434
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 179/337 (53%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G + ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+E+FN+T +K+ K +VH+ ++ PR G +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTK 338
>gi|452991330|emb|CCQ97390.1| Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium ultunense Esp]
Length = 432
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 175/342 (51%), Gaps = 30/342 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY + D+ ++ADI++INTCTV + I + K A
Sbjct: 8 TLGCKVNQYETEAMEELFEKRGYEIVDSDKDADIYVINTCTVTNLGDRKSRQFIRRAKKA 67
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE------------TLKG 168
++A GC Q +++ +EGV IV G + +V++ EE ++KG
Sbjct: 68 NANSIIAAVGCYSQVAPEEVEAIEGVDIVIGTTDRNSIVDLCEEAKNKNKKINIVKSIKG 127
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
H K+ L++ ++ +K + I GC C+YC +ARG + S +E ++
Sbjct: 128 H-------KEFENLNIADLK-SKTRAYIKIQEGCNQFCSYCIIPYARGPIRSRDLEGIIN 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 287
+ + G KEV L+ +YG+D + L ++ E+ DG +R+ P F
Sbjct: 180 ESKRLAKAGFKEVILTGIHVTSYGKDFQ---DLTLVDVIEEISKIDGIERIRLSSIEPRF 236
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ E + A + C H+ +QSGS+ VL MNR+YT S ++ +V+ + E +P
Sbjct: 237 VNEKFMQRAVNSKKLC--DHFHLSLQSGSNTVLKRMNRKYTTSQYKDIVNLIREYMPDAG 294
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I TDII GFPGET E+F +T N +K+ F ++H+ ++ PR G
Sbjct: 295 ITTDIIVGFPGETAEEFEETYNYVKDIHFSRIHVFKYSPRKG 336
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 174/341 (51%), Gaps = 14/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TDN+++AD+ L+NTC ++ +++ + +
Sbjct: 69 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGELGH 128
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ LK V ++ G I R+ ++ E K
Sbjct: 129 LKHLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKA 188
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 248
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +EV L ++ AYG+DI L ++ EL +R ++P
Sbjct: 249 EVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDF 308
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS AVL M R+YT F +V + +PG+ +
Sbjct: 309 DDHLIEV--LAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGKIKAAMPGVAL 366
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L +E F + PR G
Sbjct: 367 TTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREG 407
>gi|313673797|ref|YP_004051908.1| tRNA-i(6)a37 thiotransferase enzyme miab [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940553|gb|ADR19745.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calditerrivibrio
nitroreducens DSM 19672]
Length = 438
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 17/342 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DS+ + GY TD+ EEAD +INTC+V+ + + + I +
Sbjct: 5 VYIKTFGCQMNEYDSQRILSIFEESGYDKTDDPEEADFAVINTCSVREKPKEKVKSEIGR 64
Query: 121 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K K + +AGCV Q G LKE + V +V G I ++ E + KG +
Sbjct: 65 LKRYKNSNPDFKIAIAGCVAQEDGEAILKENKSVDLVIGTDGIPKLYEAISRVEKGERLA 124
Query: 173 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +P RN V + I GC C+YC + RG S + ++ V+
Sbjct: 125 ITEFYH-DDFTVPIFNRNSSVSAFVTIMKGCDNFCSYCIVPYVRGREKSRHYKEILDEVK 183
Query: 232 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ +GV+EV ++ +YG+ D +N L + A++ DG +R ++P
Sbjct: 184 FLVDNGVREVTFLGQNVNSYGKTLDEKINFTQFL-YMAAQI--DGLNRIRFVTSHPKDFN 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
L ++ R C Y LH+P+Q+GS+ +L MNR YT ++ + E + G+ ++
Sbjct: 241 NDLVDLIASERKICEY--LHLPLQAGSNDILKKMNRGYTFEEYEEKIFNAKEKIKGLALS 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+D I GFPGETDEDF QT+ +K ++ + ++ PRPG +
Sbjct: 299 SDFIVGFPGETDEDFEQTLKAVKNIEYETIFAFKYSPRPGTK 340
>gi|406889510|gb|EKD35681.1| hypothetical protein ACD_75C01819G0003 [uncultured bacterium]
Length = 457
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 189/358 (52%), Gaps = 29/358 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N+ DSE MA LS +GY + +EAD+ ++NTC++++ ++ + +L+
Sbjct: 6 FYIKTFGCQMNERDSEIMAQSLSRYGYIEGMDMKEADLVILNTCSIRAKAEQKVLSLLGY 65
Query: 121 CKSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEV 171
+ K +P + VAGCV Q G R ++ + V +V G Q I + ++E +G V
Sbjct: 66 LRKTKLSRPTMKICVAGCVAQQEGVRLIERMPHVDLVIGTQNIYNLGPLLENLDNEGSRV 125
Query: 172 --RLLHRKKLPAL--DLPKVRRN----------KFVEILPINVGCLGACTYCKTKHARGH 217
L +P+ LP R+ ++ + + I GC CTYC + RG
Sbjct: 126 ITTLWDDYDIPSFLPSLPSNTRSESGAQTTSPFQYSKFVTIMQGCNNYCTYCVVPYTRGR 185
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL---PILLNAIVAELPP-D 273
S V+ ++ V+ ++ GVKEV L ++ +YG+ V P + ++ ++ D
Sbjct: 186 EISRNVKDILEEVQILVKAGVKEVTLLGQNVNSYGKTNAVTAAGDPYTFSDLLRDVSNVD 245
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
G LR +NP + + L ++ C H+PVQSGSD +L AMNR+YT+ +
Sbjct: 246 GLARLRFTTSNPKDLTDALMRSFRDVKKLCPQ--FHLPVQSGSDRILKAMNRKYTVGQYL 303
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
V L E +PG+ + TD+I GFPGE+DEDF T+NL++E +F ++ RPG +
Sbjct: 304 EKVKKLHEYLPGIALTTDVIVGFPGESDEDFQGTMNLLEEVRFHGSFSFKYSDRPGTR 361
>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
Length = 428
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 175/332 (52%), Gaps = 15/332 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+TI T GC N +S M + GY D E AD+++INTCTV + S +I
Sbjct: 2 KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV-- 171
K K+ + + VAGC Q +++++EGV +V G Q +V+ V+E LK G V
Sbjct: 62 RKAIRKNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ KK L++ + + + L I GC CTYC +ARG + S +S++ +
Sbjct: 122 VDNVMNLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+T++A+G E+ L+ T YG D+ N + +V + DG LRI I
Sbjct: 180 AKTLVANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + I + + + LH+P+QSG DA L MNR+YT S + ++ + +P +
Sbjct: 238 DEI--INLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
TD+I GFPGE+DE+F +T N IKE + ++H+
Sbjct: 296 TDVIVGFPGESDEEFEETYNFIKEVNYSELHV 327
>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
Length = 414
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 176/339 (51%), Gaps = 39/339 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ EAD+ ++NTCTV +++ M +
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTETNMLRRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L+V GC+ L + E S V + R++H ++P
Sbjct: 65 EEETTDLIVTGCMA-----LAQSEAFSDV-------------------DARVMHWDEVPQ 100
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
L P V V ILPI GC+ C+YC TKHA G + S T+E+ V + R
Sbjct: 101 AALNGECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKAR 160
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I A +G +R+GM NP I
Sbjct: 161 ALVHAGAKELRITGQDTGVYGWDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHG 217
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+E+AEV + +Y F+H PVQSGSD VL M R++ + FR +V T + ++
Sbjct: 218 IHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTFDRELDHWTLS 277
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
TD I GFP ET+ D +++L++E + +V++++F RP
Sbjct: 278 TDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRP 316
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 23/343 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T N+E+ADI L+NTC ++ +++ + I K
Sbjct: 79 IRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 123 SAK--KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
K KP + V GC+ Q R LK+ + + ++ G I R+ ++++E L G E
Sbjct: 139 PLKLEKPDLIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMI 198
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPKVR+ K + I GC CTYC RG S E ++ V
Sbjct: 199 VEVWSKEGDVIENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEV 258
Query: 231 RTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAI-VAELPPDGSTMLRIGMTNPP 286
R ++A G +EV L ++ AYG+D I L L+N I ++P +R ++P
Sbjct: 259 RHLVAQGYQEVTLLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPR 313
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L E+ + + + +H+PVQSGS +L MNR+Y+ D+ +V + + +P
Sbjct: 314 DFDDRLIEV--LAQGGNLLDHIHLPVQSGSTEILKKMNRKYSREDYLELVRKIRKAIPNA 371
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFP ET+E F +T+ L++E F + + PR G
Sbjct: 372 TLTTDIIVGFPNETEEQFEETMTLMEEVGFEAAYTYIYSPREG 414
>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 434
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 180/337 (53%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G ++ ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+++FN+T +K+ K +VH+ ++ PR G +
Sbjct: 302 GFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTK 338
>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
Length = 417
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 176/337 (52%), Gaps = 33/337 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y++T+GC ++D+E + +L G D+ EAD+ LI TC V+ + I +
Sbjct: 5 YVETYGCWLAKADAEIIRQRL---GLTPVDSLREADVVLIYTCAVREDGEVRQLARIREL 61
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLP 180
++ L+VAGC L L +I ++ E E +G E+++L R
Sbjct: 62 AASGGRLIVAGC-------LARLRPYTIKSAAPHAELIYPGEVEGGRGREMKILPRYS-- 112
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 237
+ +P+ VGCLG C +C TK RG G S + +V V+ + G
Sbjct: 113 ---------GGVIYTVPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRG 163
Query: 238 VKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+E++L+ +D YG D+ G LP +L I+ E+ +G +RIGM+ P +
Sbjct: 164 AREIFLTGQDVITYGFDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFAD 221
Query: 294 EIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATD 351
+ +V++ VY + H+PVQSGSD VL AM R YT ++R +V + ++ IATD
Sbjct: 222 RLLDVVKSDGRVYRYFHLPVQSGSDRVLKAMGRRYTADEYRELVRKIRRVLGETTFIATD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
II GFPGE +EDF TV L++E +F +VH+++F PRP
Sbjct: 282 IIVGFPGEGEEDFWATVKLVEELQFDKVHVARFSPRP 318
>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
Length = 417
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 182/346 (52%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 STETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
Length = 423
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 172/335 (51%), Gaps = 10/335 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ ++ +GC+ N D + L G+ + +++E AD+ ++ TC V+ + M + +
Sbjct: 4 VAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMRE 63
Query: 121 CKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRK 177
+ + P VVAGC P+ R K ++VG + +DR+ E V L+G V L R+
Sbjct: 64 LE--RVPTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGERE 121
Query: 178 KLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ D P+ N I+PI GC C YC K ARG+L S+ E ++ RV+ +
Sbjct: 122 DIDWKADAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELER 180
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G E+ L+++DT YG D G N+ LL +V +L +R+GM NP ++A
Sbjct: 181 GAVEIHLTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLA 239
Query: 297 EVL--RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
++ R +Y +H+PVQSG D VL MNR YT+ + V + TD+I
Sbjct: 240 DLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGET+E F T+ ++ + +H S+F RPG
Sbjct: 300 GFPGETEEAFRNTLRFLERTRPHILHASRFCRRPG 334
>gi|302871917|ref|YP_003840553.1| MiaB family RNA modification protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
obsidiansis OB47]
Length = 433
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 184/347 (53%), Gaps = 27/347 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ +++++ + I+ G + ++V+ V+E L ++KK+
Sbjct: 67 SPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLD-------NKKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A+D +R F E+ + I GC C+YC +ARG + S ++ES+
Sbjct: 120 AID-EGYKRESFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLESIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR ++++G KE ++ + AYG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEPLIM 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E I+ +L + LH+ +QSGSD +L MNR YT + ++ +V+ + E +
Sbjct: 238 SEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWDDVAF 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFPGET+EDFN TV ++E F ++H+ +F P+ G + ++
Sbjct: 296 TTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDM 342
>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
Length = 432
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 188/379 (49%), Gaps = 39/379 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY + E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVKK- 66
Query: 125 KKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K P + V GC Q ++ ++E V++V G +VE VE +V +
Sbjct: 67 KNPNSVIAVVGCYSQVAPEEILDIEEVNLVMGTNDRRHIVEKVEAVTCNDKVSTVD---- 122
Query: 180 PALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
D+ KV+ + +EI + I GC CTYC +ARG + S ++++V
Sbjct: 123 ---DIMKVKEFEEIEITQTNGRTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDLDNIVEE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
V+ + + G KEV L+ +YG+DI LL+ I A DG +R P F
Sbjct: 180 VKLLASKGYKEVVLTGIHVASYGKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVEPILFT 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E ++EI+++ + V H+ +QSG DA L MNR YT +++ +VD L E +P + I
Sbjct: 240 DEFVEEISKMNK---VCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDVAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDS 397
TD+I GFPGET+E+F QT +K+ + Q+HI ++ PR G Q ++ S
Sbjct: 297 TTDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHMRS 356
Query: 398 TELLSLLFSNY-KFTVMLI 415
+L+SL +N+ KF I
Sbjct: 357 EQLISLSKNNFDKFAERFI 375
>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
Length = 452
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 183/351 (52%), Gaps = 34/351 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFQFSEDPNQADLILYNTCSIRDNAEHKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K +P L+VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AKRKLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQV 126
Query: 172 ---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
LH + D+ K RR V +NV GC CTYC RG S T E++
Sbjct: 127 VATEALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTML 278
+ + G KEV L ++ AYGRD+ G NL L + + V ++P G +
Sbjct: 182 RAEMEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERI 239
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R ++P + E L + L P V H+P QSG + +L AM R YT +R ++D
Sbjct: 240 RFATSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDM 297
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +P I+ D I GFPGET+E F T+ L++E F ++ + + PRPG
Sbjct: 298 IRHYMPDASISADAIVGFPGETEEQFENTLKLLEEISFDMLNTAAYSPRPG 348
>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
Length = 447
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 69 AHRKRQEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 129 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G N L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPG
Sbjct: 303 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPG 348
>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 434
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 185/347 (53%), Gaps = 26/347 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC N D+E M L + + E AD++ INTCTV + S I+K
Sbjct: 3 VAISTLGCRVNIYDTEIMISALKEDDFEVVSYDEFADVYCINTCTVTNTSDKKSRQFISK 62
Query: 121 CKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGHEVRL 173
CK ++A GC PQ S+D + E++ V+I+ G + Q+ + + ET G +V
Sbjct: 63 CKKINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GKQVIK 120
Query: 174 LHRKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ L + + ++K + I GC CTYC ARG + S +
Sbjct: 121 VDDNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRKIFDE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPF- 287
VR+++++G KEV L+ +T +YG D+G+++ ++ L ++ E+ DG +R+G +P F
Sbjct: 181 VRSLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVDPEFF 238
Query: 288 ---ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
I+E + +I +++ H H+ +QSG D+VL M R+Y +S ++ VV+ L +
Sbjct: 239 TTEIVERMSKIKKLMPH------FHLSLQSGCDSVLKRMRRKYDISLYKKVVEDLRREIE 292
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+ I TDII GFPGETD++FN+T N +K K +H+ ++ R G +
Sbjct: 293 DVSITTDIIVGFPGETDDEFNETYNFLKNIKLQDMHVFKYSKRNGTK 339
>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
Length = 417
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 176/337 (52%), Gaps = 19/337 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGLDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
H +Y FLH PVQSGS+ VL M R++ +S++ VV+T + + ++TD I GFP
Sbjct: 229 AEHDELYDFLHAPVQSGSNDVLGDMRRQHQVSEYLEVVETFDDALEYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
E+D D Q++ L++E + ++++++F RPG ++
Sbjct: 289 ESDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADM 325
>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
Length = 417
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 178/346 (51%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
H +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSNDVLGDMRRQHQVDEYLEVVETFDDALEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
variabilis ATCC 29413]
gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
29413]
Length = 454
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 181/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
Length = 417
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 180/347 (51%), Gaps = 28/347 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSR-DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGNRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
P ET+ D Q++ L++E + ++++++F RPG D+ EL L
Sbjct: 287 PTETERDHEQSMALLRETRPEKINVTRFSKRPGT-----DAAELKGL 328
>gi|429727800|ref|ZP_19262556.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
gi|429151534|gb|EKX94398.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
Length = 442
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 183/371 (49%), Gaps = 37/371 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC NQ ++E M GY + E AD+++INTCTV S I K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDDIREE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 ITTLAKNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDST 398
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR G Q S
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 399 ELLSLLFSNYK 409
LL+L N+K
Sbjct: 357 ALLNLSKKNFK 367
>gi|255994803|ref|ZP_05427938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
49989]
gi|255993516|gb|EEU03605.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium saphenum ATCC
49989]
Length = 484
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 204/411 (49%), Gaps = 53/411 (12%)
Query: 62 YMK----TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
YMK T GC NQ ++ +A + S+ GY +T +++ DI +IN+C+V S ++ +
Sbjct: 42 YMKVGFLTLGCKVNQYETRAVAEKFSSRGYEVTSGTKDVDIAIINSCSVTSMAEKKVRQA 101
Query: 118 IAKCKSAKKPLVVA--GCVPQ--GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
I K + V+A GC PQ G LK L I+G + +VE VE+ LK V
Sbjct: 102 IRKMRRENPDSVIAVMGCYPQRDGGAALKSLGCNVIIGNESKLGIVEKVEKFLKEQSV-- 159
Query: 174 LHRKKLPALDLPKVRRNKFVE--------------ILPINVGCLGACTYCKTKHARGHLG 219
+D+ + R K E + I GC CTYC H RG +
Sbjct: 160 -------IIDVTDINRCKTFENIQATCDIDGRKRAYIKIQDGCDRYCTYCIIAHVRGQVR 212
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGS 275
S V+ + + ++ DG +E+ L+ +T YG D IG ++ ++N I + +P G
Sbjct: 213 SKKVDDIYEEAKKLVEDGYREIVLTGINTALYGEDLHQGIGKSMVDVINKI-STIP--GD 269
Query: 276 TMLRIGMTNPPFI----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331
+RIG P + + +K + ++ RH H+ VQSGS+ VL+AM R YT +
Sbjct: 270 FRIRIGSLEPTVVNKEYINLIKNLPKLCRHA------HLSVQSGSNDVLAAMGRNYTREE 323
Query: 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---P 388
+ +VD L + I+TDII GFPGE+++DF Q++ L+++ F +VHI ++ R P
Sbjct: 324 YIDIVDMLRDAHGNYGISTDIIVGFPGESEKDFEQSLMLVEKIPFTKVHIFRYSERAGTP 383
Query: 389 GIQFLNLDSTELLSLLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQ 439
F N+ E+ + + + + + + H ++ D+R V+F M ++
Sbjct: 384 AAGFKNMIKEEIKTRRMK--ELSTIAKDSMRRFHELNMGDRRGVIFEMKEE 432
>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
Length = 505
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 185/375 (49%), Gaps = 15/375 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE +AG L GY A + +AD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A++P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIDGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSDAVL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +D
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 400 LLSLLFSNYKFTVML 414
++ Y+ V L
Sbjct: 364 PKKVVQERYERLVAL 378
>gi|427723965|ref|YP_007071242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
gi|427355685|gb|AFY38408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
Length = 451
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 176/346 (50%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEGMGYLFAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G L+ + V I+G Q +R+ E++E+ G ++
Sbjct: 68 AKRKHSKPDLTLIVAGCVAQQEGESLLRRVPEVDLIMGPQHANRLQELLEQVDSGSQIVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 128 TEPIHI-VEDITKPRRDSSVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIYAEME 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA--------IVAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ P N V ++P G +R +
Sbjct: 186 ELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYNLTDLLYFVHDVP--GIERIRFATS 243
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P + H+P QSG + VL AM R YT +R ++D + + +
Sbjct: 244 HPRYFTERLIKACHEL--PKICEHFHIPFQSGDNDVLKAMRRGYTHEKYRRIIDNVRKYM 301
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I FPGET+E F T+ L+++ F Q++ + + PRPG
Sbjct: 302 PDASISADAIVAFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPG 347
>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
Length = 437
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
I T GC NQ+D+ M G A GY + E AD++L+NTC V + Q +I +
Sbjct: 4 IAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQIINR 63
Query: 121 CKSAKKPL---VVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH 175
PL VV GC PQ + +++ +EGV I+G Q+ R+VE+VEE L+ +L
Sbjct: 64 A-VRHNPLSLVVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILD 122
Query: 176 RKKLPALDLP------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ +D +K L I GC CTYC ARG L S +++S+
Sbjct: 123 NVQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--ILLNAIVAELPPDGSTMLRIGMTNP-- 285
V ++A G KEV L G YG+++ L +A+ A L +G +R+G
Sbjct: 183 VGKLVAAGYKEVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVE 242
Query: 286 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P +L+ + E + RH LH+P+QSG D +L AM+R Y F +V+ + V
Sbjct: 243 VEPRLLQLMAEEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRAQV 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + I TD+I GFPGE +EDF T+ K+ F ++HI + R G
Sbjct: 297 PDVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKG 342
>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
Length = 374
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 31/303 (10%)
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 148
+T++ EEAD ++NTCTV ++ M +A A + L V GC+P
Sbjct: 1 MTEHPEEADAVIVNTCTVIGATERKMLRRLAL--FADRDLYVTGCMP------------- 45
Query: 149 IVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPALDLPKVRRNKFVEILPINVGCLGAC 206
V Q+D++ V H +R +H + R ++ + GC+G C
Sbjct: 46 ---VVQLDKIRSVCTP----HVIRPDEIHERAGSV----GTRGPGATGVVQVASGCVGRC 94
Query: 207 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 266
+YC T+ ARG L S E++ VR ++ G E+ L+ +D A+G D G +LP LL I
Sbjct: 95 SYCITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAAWGLDRGESLPDLLQEI 154
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
AE+P G +R GM +P +L L+ + + ++ FLH+PVQSGSD VL M R
Sbjct: 155 -AEIP--GRFAVRPGMMHPATVLGILEPLVDAYESKKIFRFLHLPVQSGSDTVLERMQRG 211
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
YT +D +VD E P M I++D I GFPGETDE+F+QT+ L++ F +V+I+++
Sbjct: 212 YTAADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTLELLRRAAFVKVNITRYSR 271
Query: 387 RPG 389
RPG
Sbjct: 272 RPG 274
>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
Length = 467
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 183/369 (49%), Gaps = 20/369 (5%)
Query: 42 DNHLSKTGSLSPKIPGTET-----IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
DN +K LS K P T + T GC N ++E MA + GY +TD + A
Sbjct: 12 DNDKTKLEKLSNKEPAKNTEGKSLVAFATLGCRVNHYETEAMAEKFIREGYEVTDFNNFA 71
Query: 97 DIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GV 152
D+++INTC+V + S +I++ + A K ++A GC Q ++ +EGV +V G
Sbjct: 72 DVYVINTCSVTNMSDKKSRQIISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGT 131
Query: 153 QQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
+ +V V + + +L L K+ L++ + + +K L I GC C
Sbjct: 132 RNKGDIVYYVNKAKDEQKPQLMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCA 190
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
YC + RG S + ++ ++ + G KE+ LS T +YG D+ N+ ++ ++
Sbjct: 191 YCLIPYTRGTTCSKDPQKVLDEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLL 248
Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
E+ DG +RIG P F + E ++ C H+ +QSG DA L MNR
Sbjct: 249 EEIEKMDGIERVRIGSIEPSFFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATLKRMNRR 306
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
YT ++ V+ + E + I TD+I GFPGETDE+F++T +K+ K + HI +F P
Sbjct: 307 YTAKEYEDAVNRIRENLKDASITTDVIVGFPGETDEEFSETYEYLKKLKLTKTHIFKFSP 366
Query: 387 RPGIQFLNL 395
R G + ++
Sbjct: 367 RKGTKAADM 375
>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
Length = 439
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 177/349 (50%), Gaps = 27/349 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G +M T GC NQ ++E M G A GY + E A++++INTC+V S
Sbjct: 7 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQ 65
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ LEGV +V G ++ R+V+ VEE L+
Sbjct: 66 LIRRAARTNPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGA 125
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 126 IGTITDIMQARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 179
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ ++ + G EV L+ GAYG D+ + P L +A L + LR+G
Sbjct: 180 ELSAVAREMKLLTEAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLG 238
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+E E+ E++R P + LH+P+Q+GSD VL AMNR Y + F T+++ +
Sbjct: 239 SLES---VELSAELLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFATLLEDVR 295
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
VPG+ I+TDII GFPGET+EDF ++ ++ F ++H+ + PR G
Sbjct: 296 RAVPGVAISTDIIVGFPGETEEDFAAGLDFVRAMGFARMHVFPYSPRKG 344
>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
15829]
Length = 455
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 17/353 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 10 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 69
Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 70 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 129
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 130 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 190 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 247
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 248 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 305
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ ++TDII GFPGET+EDF +T++L++E ++ + RPG N++ T
Sbjct: 306 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDT 358
>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8802]
gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
Length = 446
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 181/344 (52%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 187 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 247 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+E F T+NL+++ F Q++ + + PRPG
Sbjct: 305 ASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPG 348
>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
Length = 460
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 17/353 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 15 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 74
Query: 115 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 75 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 134
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 135 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 194
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 195 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 252
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 253 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 310
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ ++TDII GFPGET+EDF +T++L++E ++ + RPG N++ T
Sbjct: 311 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDT 363
>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
Length = 417
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 174/339 (51%), Gaps = 23/339 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
+ L + GC+ QG +E + G V D V E V E
Sbjct: 65 SAETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+AE
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAE 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y FLH PVQSGSD VL M R++ +S++ V++T E + ++TD I GF
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDEALEYWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P ETD D Q++ L++E + +V++++F RPG +
Sbjct: 287 PTETDRDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEM 325
>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 446
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 174/349 (49%), Gaps = 25/349 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTD-NSEE---ADIWLINTCTVKSPSQSAMDTLIAK 120
TFGC NQ DSE + G+ ++D N +E D+ +INTCTV + I K
Sbjct: 11 TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRK 70
Query: 121 CKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 173
K V+A GC PQ + +K LEGV IV G++ +VE+VE+ L +
Sbjct: 71 LKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAI 130
Query: 174 -LHRKKLPALDLPKVRRNKFVE------ILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
LH + P + ++ F + L I GC C+YC +ARGHL S E +
Sbjct: 131 HLHDSR-PKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDV 189
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ ++ +++G KE+ L+ + GAYGR+ NLP L + + G +R+ P
Sbjct: 190 ISEIKQAVSNGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQ 248
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I L E+ C + LH+P+QSG + +L AMNR+Y+ D+R +V E P +
Sbjct: 249 EITIGLLELVTNSEKICKH--LHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSI 306
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR---PGIQF 392
I TDII GFPGE+ F T +K+ F +HI Q+ PR P +F
Sbjct: 307 AITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEF 355
>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
Length = 435
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 172/351 (49%), Gaps = 35/351 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+I T GC NQSD+ M GY + E +DI LINTC V + Q +I
Sbjct: 4 SISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRRMIR 63
Query: 120 KC-KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLH 175
+ K KPL VV GC PQ + ++ LEGV + VG + R+VE+VEE RL
Sbjct: 64 RTIKRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGE 116
Query: 176 RKKLPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
R P LDLP V ++ L I GC C+YC +ARGHL S
Sbjct: 117 RDAAPVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRP 176
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ S+ V + +G KEV L G YG++ N L +A+ A L LR+G
Sbjct: 177 LSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS 235
Query: 283 TNPPFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
LE ++ E+LR P LH+P+QSG D +L AMNR Y + F+ ++D
Sbjct: 236 ------LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDR 289
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ VP + I TDII GFPGET+ DF QT+ + F ++HI + R G
Sbjct: 290 IRAAVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKG 340
>gi|433654786|ref|YP_007298494.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292975|gb|AGB18797.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 452
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 174/340 (51%), Gaps = 16/340 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E M GY + D E AD+++INTCTV + +S + AK
Sbjct: 27 TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQEIRKAKKI 86
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q S ++ L V+IV G + VV++VE+ E +
Sbjct: 87 NPDSIIAVVGCYSQVASNEVLNLPEVNIVLGTKNKGEVVKLVEKVSGDKEKINAVENIFD 146
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L + + L I GC CTYC +ARG + S ++++ V+ +
Sbjct: 147 NKKFEELKIS-AQEGHTRAYLKIQDGCNQFCTYCIIPYARGPVRSRRPDNILDEVKRLRD 205
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KEV L+ +YG+D+ +NL ++ I DG +R+ P F+ E
Sbjct: 206 NGYKEVILTGIHVASYGKDLENINLLDIIKMI---HEVDGIERIRMSSIEPTFLTEDF-- 260
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I EV P HV +QSGSD+ L M R+YT S+++ ++D + E + + I TDI+
Sbjct: 261 IKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYKEIIDRIREHIKDVAITTDIMV 320
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394
GFPGETDE+FN+T N +K +F ++H+ ++ RPG + N
Sbjct: 321 GFPGETDEEFNETFNFVKAIEFSKMHVFKYSRRPGTKAAN 360
>gi|317050742|ref|YP_004111858.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
gi|316945826|gb|ADU65302.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfurispirillum
indicum S5]
Length = 441
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 189/348 (54%), Gaps = 27/348 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++KT+GC N DSE + G L A GY + + +EAD+ + NTC+V+ ++ + +
Sbjct: 2 TQRAFIKTYGCQMNSGDSERIRGILVAHGYEMVSDVKEADLAIFNTCSVREKAEQKVFSD 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
I + + K+ + + GC+PQ R+ L++ + IV GV I +++ + E +G
Sbjct: 62 IGRLRGQKERHPGFRIALCGCIPQVQREGILRKNPLIDIVFGVNNISGLMDFIAEAQQGK 121
Query: 170 EVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + D+P R + + I GC C+YC + RG S + S++
Sbjct: 122 RTCRVEDEFFESEYDMPSQREDAMKAFVTIMNGCDNYCSYCIVPYTRGRERSRSAPSILA 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+R ++ DGV+EV L ++ +Y +D V+ P LL+ +V ++P + RI
Sbjct: 182 EIRQLVDDGVREVTLLGQNVNSYRWQDKAGALVDFPQLLH-LVHDIPE----LQRI---- 232
Query: 285 PPFILEHLKEIAEVLRH----PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
F+ H K+ +E + P V +LH+P+Q+GS+ +L MNR YT ++ + L
Sbjct: 233 -RFVTSHPKDFSEAMMEAMALPRVCKYLHLPIQAGSNRILKLMNRGYTREEYLAKIARLK 291
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
E +PG+ +++D + GFPGET+EDF QT++++++ ++ Q+ + RP
Sbjct: 292 ERIPGVALSSDFLVGFPGETEEDFLQTMDILEQVEYKQIFGFNYSVRP 339
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 86 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 382
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + PR G
Sbjct: 383 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREG 423
>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
owensensis OL]
gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
owensensis OL]
Length = 434
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 185/347 (53%), Gaps = 27/347 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ +++++ + I+ G + ++V+ V+E L+ ++KK+
Sbjct: 67 SPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLE-------NKKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A+D +R F E+ + I GC C+YC +ARG + S ++ES+
Sbjct: 120 AID-EGYKRGTFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLESIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR ++++G KE ++ + AYG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEPLIM 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E I+ +L + LH+ +QSGSD +L MNR YT + ++ +VD + E +
Sbjct: 238 SEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDDVAF 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ G + ++
Sbjct: 296 TTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDM 342
>gi|434386620|ref|YP_007097231.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
gi|428017610|gb|AFY93704.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Chamaesiphon minutus PCC 6605]
Length = 450
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 179/351 (50%), Gaps = 24/351 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P + ++ TFGC N++DSE M G L G+ +D+ AD+ L NTCT++ ++ +
Sbjct: 3 PIDRSYHITTFGCQMNKADSERMGGILEDMGFQWSDDPFTADLVLYNTCTIRDLAEQKVY 62
Query: 116 TLIAKCKSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEET 165
+ + K KK L++AGCV Q R + EL+ I+G Q +R+ +++++
Sbjct: 63 SYLGKQTRRKKDNPDLVLIMAGCVAQQEGEALLRRIPELD--LIMGPQHANRLEDLLQQV 120
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTV 223
G +V + D+ K RR+ V +NV GC CTYC + RG S T
Sbjct: 121 FSGAQVVATEPIHIIE-DITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTP 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTM 277
E++ ++ + G KEV L ++ AYGRD+ G + L + + +G
Sbjct: 179 EAIRAEIKELARQGYKEVTLLGQNIDAYGRDLPGSTVEGRHSHTLTDLLYYIHDIEGIER 238
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R ++P + E L I P V HVP QSG + +L AM+R YT +R +VD
Sbjct: 239 IRFATSHPRYFTERL--IKACTELPKVCEHFHVPFQSGDNDILKAMSRGYTHEKYRRIVD 296
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
T+ + +P I+ D I GFPGET+E F +T+ LI + F V+ + + PRP
Sbjct: 297 TIRKYMPDASISADAIVGFPGETEEQFERTLELIADVGFDMVNTAAYSPRP 347
>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
Length = 441
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 176/339 (51%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P E + D +++L+ E + ++++++F RPG ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 85 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 144
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 145 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 204
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 205 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 264
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 265 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 323
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 324 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 381
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + PR G
Sbjct: 382 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREG 422
>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
Length = 707
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 192/367 (52%), Gaps = 36/367 (9%)
Query: 47 KTGSLSPKI-----PGTET---IY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
++G L P++ P + T +Y ++TFGC N +DSE MAG+L GY T + EAD
Sbjct: 243 RSGELVPQLYARENPNSRTRRRLYNVQTFGCQMNLADSERMAGELERCGYRHTPDPYEAD 302
Query: 98 IWLINTCTVKSPSQSAMDTLIA---KCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSI 149
+ L+NTC+++ ++ + + + + K P L+VAGCV Q G + L+ + + +
Sbjct: 303 LILLNTCSIRDHAEQKVYSFLGPFVRMKEKSNPGLKLIVAGCVAQQEGVKMLRRIPALDL 362
Query: 150 V-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACT 207
V G Q +R+ +++E+ G++V + D+ K RR V + I+ GC CT
Sbjct: 363 VMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDISKPRRQSQVCAWVNISYGCNERCT 421
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 265
YC + RG S +VES+V V + +G +EV L ++ AYGRD+ V LL
Sbjct: 422 YCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTLLGQNIDAYGRDMRPRVTFAQLLRH 481
Query: 266 IVAELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
+ A G +R +P P +++ E+ P + + H+P Q+G D VL
Sbjct: 482 VSA----TGIDRIRAITAHPRYWSPRVIQATAEL------PNIMPYFHIPFQAGDDEVLK 531
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
AM R YT +R +++ + E +P I D I GFPGET+E F +T+ L++ + V+
Sbjct: 532 AMGRGYTAKRYRRIIEMIREYLPDAAITADAIVGFPGETEEQFQRTLELMEALQLDNVNT 591
Query: 382 SQFYPRP 388
+ + PRP
Sbjct: 592 AAYSPRP 598
>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 442
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 183/371 (49%), Gaps = 37/371 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--AKCK 122
T GC NQ ++E M GY + E AD+++INTCTV S I K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 181 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDEIREE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 IITLANNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDST 398
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR G Q S
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 399 ELLSLLFSNYK 409
LL+L N+K
Sbjct: 357 ALLNLSKKNFK 367
>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
Length = 433
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 174/342 (50%), Gaps = 20/342 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + D SE AD ++INTC+V + LI +
Sbjct: 4 VALTTLGCKVNQVETEIMEGLFRNRGYEIVDFSEPADFYIINTCSVTHLGERKSRQLIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 169
++A GC Q S ++ ++EGV +V G +Q D++V++VE+ + +
Sbjct: 64 ANRLNDNAIIAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVN 123
Query: 170 EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+V +H + +P P R L I GC C+YC + RG + S +ES+
Sbjct: 124 DVMHMHEFEDIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKT 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ + E+ + GAYGRD G N+ L +A+ L + LR+G
Sbjct: 180 AVDQLVEENFHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIE 238
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
I L E+ + H LH+P+Q+GSD +L AMNR YT +F +++ + VP +
Sbjct: 239 ISPRLLELVKT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFARLIENIRREVPDIA 296
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+TDII GFPGETDE F +++ K F ++H+ + R G
Sbjct: 297 ISTDIIVGFPGETDELFQKSLEFAKSMGFMKMHVFPYSKRAG 338
>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
Length = 451
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 184/349 (52%), Gaps = 22/349 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ ++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + +
Sbjct: 9 TQRYHITTFGCQMNKADSERMAGILEEMGFEWSEDPNQANLILYNTCTIRDNAEQKVYSY 68
Query: 118 IAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + K+ L+VAGCV Q G + L+ + + +V G Q +++ ++E+ G+
Sbjct: 69 LGRQAKRKQTEPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGN 128
Query: 170 EVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 226
+V + + + L D+ K RR V +NV GC CTYC + RG S T E++
Sbjct: 129 QV--VATEAIEILEDITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRI 280
+ T+ G KE+ L ++ AYGRD+ G +L + + G +R
Sbjct: 186 RKEMETLGQQGYKEITLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRF 245
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P + E L + L P V H+P QSG + +L AM R YT +R +++ +
Sbjct: 246 ATSHPRYFTERLIRACQEL--PKVCKHFHIPFQSGDNQILKAMARGYTREKYRGIIEKIR 303
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
E +P I+ D+I GFPGET+ F +T+ L++E F V+ + + PRPG
Sbjct: 304 EYMPDAAISADVIVGFPGETEAQFEKTLELVEEISFDLVNTAAYSPRPG 352
>gi|348026751|ref|YP_004766556.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
gi|341822805|emb|CCC73729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
Length = 373
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 175/337 (51%), Gaps = 18/337 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
++GC N SDSE+ AGQL GY T++ + AD+ LINTC V+ ++ I + K
Sbjct: 13 SYGCQANMSDSEHYAGQLEELGYHHTEDLDTADVILINTCCVRETAEDKTLGKIGELKHL 72
Query: 125 KKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K + V GC+ Q +D K + +V G I +++E+++E + +
Sbjct: 73 KTQNPDLIIAVTGCMAQEWQDKLFKRAPHIDLVIGTHNIHKLIELIQERRSKADHYMAAD 132
Query: 177 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
LPA D+P R KF +PI GC CTYC + RG S ++++V ++ V A
Sbjct: 133 MSLPAFHDMPVKRFQKFFAWIPIMNGCNKFCTYCIVPYVRGREVSRPIDAIVEEIKKVAA 192
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHL 292
+G KE+ L ++ +YG D+ G + L+ A+ DG +R ++P +
Sbjct: 193 EGYKEITLLGQNVNSYGLDLKDGTDFSKLVAAVD---DIDGIERVRYMTSHPKDMTFAMI 249
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IA+ + V + +H+P+Q GS+ +L MNR YT+ + +VD + +P + + TDI
Sbjct: 250 DAIADSQK---VVNHMHLPIQCGSNELLKKMNRGYTVEHYLELVDYARKRMPDLVLTTDI 306
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGET+ F T+NL+K ++ + + PR G
Sbjct: 307 IVGFPGETEAMFEDTLNLLKRVQYDMAYTFIYSPRTG 343
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 15/347 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFP ETDE F +T++L +E +F + + PR G N+
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANM 425
>gi|384566957|ref|ZP_10014061.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
gi|384522811|gb|EIF00007.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
Length = 498
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 180/350 (51%), Gaps = 29/350 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + EE D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALAADGEEPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R +K V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIASLPVLLERARHNA 121
Query: 170 EVRLLHRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L AL+ LP R + + + I+VGC CT+C RG
Sbjct: 122 EAQV---EILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPG 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGM 282
++ V ++A+GV EV L ++ +YG + G +A L GS + R+
Sbjct: 179 EILAEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRF 233
Query: 283 TNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
T+P F + ++ +AE P V LH+P+QSGSD VL AM R Y + F +++ +
Sbjct: 234 TSPHPAAFTDDVIEAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLGILERV 290
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
E +P I TDII GFPGET+EDF QT+ +++E +F Q+ PRPG
Sbjct: 291 REAMPDAAITTDIIVGFPGETEEDFEQTLEVVREARFSSAFTFQYSPRPG 340
>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
Length = 441
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 176/339 (51%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLGDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P E + D +++L+ E + ++++++F RPG ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
Length = 454
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLLLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ +VVAGCV Q G L+ + + +V G Q +R+ E++E+ G++V
Sbjct: 69 AKRKQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGKQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++D + +L
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIRQL 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDHLNTAAYSPRPG 348
>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 432
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 173/347 (49%), Gaps = 24/347 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ + GY +N + +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K K VVA GC Q S ++K +EGV +V G +R+V+++EE+ K +E
Sbjct: 63 RKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE---- 118
Query: 175 HRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
K DL VR N+ + + GC CTYC ARG + S T+E
Sbjct: 119 --KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRTIE 176
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
V RT+ G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 177 DSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSSVE 234
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I + E A C + H+ +QSGS+ +L AMNR YT D+ + + +P
Sbjct: 235 PIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNILKAMNRRYTREDYIEKANIIRNYMP 292
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+ DII GFPGE+ EDF ++ ++KE F ++H+ ++ R +
Sbjct: 293 HAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTK 339
>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 475
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 177/338 (52%), Gaps = 17/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEE--TLKGHEVR 172
K+ + + GC+ Q + ++++++ V +V G I ++ E++ + T K +
Sbjct: 101 KEKNHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLTTKKQIIN 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++T
Sbjct: 161 VMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKT 220
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEH 291
++ADGVKE+ L ++ +YGR G+ I ++ + +G LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGR--GLEEEISFAGLLERIAEIEGLERLRFMTPHPKDLSDE 278
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ E+ + + C + LH+P+QSGS A+L MNR YT D+ +V + +P + + TD
Sbjct: 279 VIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEDYLNLVKRIKTAIPDISLTTD 336
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGET+ DF T+ ++KE ++ + R G
Sbjct: 337 IIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRSG 374
>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
gi|337736504|ref|YP_004635951.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
gi|384458011|ref|YP_005670431.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|336292009|gb|AEI33143.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
Length = 436
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 13/336 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + G+ + DN E+AD ++INTCTV + +I++ + A
Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
K V+A GC Q + E+EGV IV G + I V + +EE + V+ +
Sbjct: 67 NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC +ARG + S E ++G ++ +
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ LS +YG D+ + L++ I DG +RIG P F E
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ C + H+ +QSG L MNR+YT +++ +V L E + + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
FPGETDE+F +T + +KE + ++H+ ++ PR G +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTK 338
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG L GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K KP L V GC+ Q ++ LK+ + V +V G I R+ ++ E E
Sbjct: 131 LKPLKMEKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVVENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + + +P + +
Sbjct: 310 DDHLIEV--LAKKGNLMEHIHLPVQSGSSEILKIMARKYTREQYLELVRKIKKAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ET+E F +T++L++E F + + PR G
Sbjct: 368 TTDIIVGFPNETEEQFEETLSLVREVGFESAYTFIYSPREG 408
>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
Length = 414
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 186/340 (54%), Gaps = 23/340 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M
Sbjct: 3 SYHLETYGCTANRGESRTIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLRRAR 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC+ QG + +L+ ++ G ++ VV L G E +
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTVTPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD + ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LLN I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRITGQDTGVYGWDDGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
EV + +Y+FLH PVQSGSD VL M R++ + +FR VV T + + +ATD I G
Sbjct: 224 EVFAENEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVKTFDDHLDHWTLATDFITG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
FP E+D D +++ L++E + ++++++F RPG ++
Sbjct: 284 FPTESDADHEESMELLRETQPERINVTRFSKRPGTDAADM 323
>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
Length = 458
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 183/367 (49%), Gaps = 30/367 (8%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC N DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEMKDSNIKYFTTY--TYGCQMNHHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVS 148
A LINTC V+ ++ + I + K+ K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 149 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 205
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 206 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 263
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 264 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
A+ T+ R+ MT+ P + K I +L + H+PVQSGSD +L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVIDTILNSKKICDHFHLPVQSGSDTILKM 292
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNR YT +R +V + + +P + TDII GFPGETDE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGETDELFQETLEFLKEIRFDASYTF 352
Query: 383 QFYPRPG 389
+ R G
Sbjct: 353 LYSKRSG 359
>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
Length = 466
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 180/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTCT++ ++ + + + +
Sbjct: 29 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 88
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 89 AHRKRQEPGLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 148
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 149 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 207
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ P L V ++P G LR ++
Sbjct: 208 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFATSH 265
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 266 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 322
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPG
Sbjct: 323 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPG 368
>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 444
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 173/339 (51%), Gaps = 16/339 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ +GC NQSD+E M GQL GY T++ EEAD+ LINTC V+ ++ + I +
Sbjct: 13 YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLK--GHEV 171
K K+ + GC+ Q D +K + V G ++ + VV+E GH V
Sbjct: 73 KRLKRENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHGHVV 132
Query: 172 RL-LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ L +LP D+P R +PI GC CTYC + RG S E +V V
Sbjct: 133 DVQLGETELPD-DVPVARAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPEDIVHEV 191
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +G +EV L ++ +YG+D + L +V ++P G +R ++P + +
Sbjct: 192 EEAVKNGYEEVTLLGQNVNSYGKDHKLADFADLLKMVDKVP--GIRRVRFMTSHPKDLSD 249
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ H C + +H+PVQ GS+ +L AMNR YT+ +R +V + +P + + T
Sbjct: 250 KVIAAIRDGEHLCEH--IHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAIPDVSLTT 307
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D+I GFPGETDEDF Q ++ ++E ++ + + R G
Sbjct: 308 DLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSG 346
>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
Length = 444
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 174/338 (51%), Gaps = 17/338 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ LVV GC+ ++ V +I EV L G E +
Sbjct: 63 ELSETTAELVVTGCMALAQGEMFAEADVDA----EILHWDEVPTYVLNG-ECPTVTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGDFRVRLGMANPGGIHGIHEELADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y F+H PVQSGSD VL M R++ + FR VV+T E + ++TD I GFP
Sbjct: 228 FAENEELYDFVHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDERLDHWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
E + D ++++L+ E ++++++F RPG ++
Sbjct: 288 TEDEADHERSMDLLAEVSPEKINVTRFSKRPGTDAADM 325
>gi|22298858|ref|NP_682105.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Thermosynechococcus elongatus BP-1]
gi|81743104|sp|Q8DJB2.1|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
Length = 450
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 175/344 (50%), Gaps = 22/344 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ TFGC N++DSE MAG L A G L +EAD+ L NTCT++ ++ + + + +
Sbjct: 6 YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + V +V G Q +R+ E++E+ G +V
Sbjct: 66 AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G KEV L ++ AYGRD+ G + + G +R ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ E L + AE+ P V H+P QSG + +L AM R YT + +++T+ +P
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEILKAMARGYTRERYLHIIETIRRYMP 300
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I+ D I GFPGET+E F +T++L+ F Q++ + + PRP
Sbjct: 301 DAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRP 344
>gi|383639215|ref|ZP_09951621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
chartreusis NRRL 12338]
Length = 507
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 187/381 (49%), Gaps = 28/381 (7%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEEADIWLINTCTVKSPS 110
S + GT T ++T+GC N DSE +AG L GY + ++EAD+ + NTC V+ +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGADEADVVVFNTCAVRENA 66
Query: 111 QSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVV 162
+ + + + A +P + V GC+ Q RD +K+ V +V G I ++ ++
Sbjct: 67 DNKLYGNLGHLAPQKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 126
Query: 163 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 ERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKD 186
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTML 278
++ + ++A+GV E+ L ++ AYG DIG LL A ++
Sbjct: 187 RRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GKIESLE 241
Query: 279 RIGMTNPPFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
R+ T+P H ++ IA + P V LH+P+QSGSD VL AM R Y +
Sbjct: 242 RVRFTSP-----HPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYL 296
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFL 393
+++ + +P I+TDII GFPGETDEDF QT+++++E +F Q Q+ RPG
Sbjct: 297 GIIEKVRAAIPHAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAA 356
Query: 394 NLDSTELLSLLFSNYKFTVML 414
+D ++ Y+ V L
Sbjct: 357 EMDGQIPKKVVQERYERLVAL 377
>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
Length = 417
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 177/345 (51%), Gaps = 24/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ + +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVEGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFSKADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ ++D E + ++TD I GFP
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEIIDAFDEALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + +V++++F RPG D+ E+ L
Sbjct: 289 ETDHDHAQSMALLRETRPEKVNVTRFSKRPGT-----DAAEMKGL 328
>gi|187932620|ref|YP_001885098.1| hypothetical protein CLL_A0897 [Clostridium botulinum B str. Eklund
17B]
gi|187720773|gb|ACD21994.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 434
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 179/337 (53%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + GY++TD + AD+++INTCTV + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSDAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVLEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+G + ++ +++ ++ +G +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTGVTLI--SLLEDIEKIEGIDRVRIGSIEPAFFTDEVIN 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+E+FN+T +K+ K +VH+ ++ PR G +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTK 338
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 15/347 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFP ETDE F +T++L +E +F + + PR G N+
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANM 425
>gi|4104517|gb|AAD02057.1| unknown [Clostridium acetobutylicum DSM 1731]
Length = 386
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 175/336 (52%), Gaps = 13/336 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + G+ + DN E+AD ++INTCTV + +I++ + A
Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 175
K V+A GC Q + E+EGV IV G + I V + +EE + V+ +
Sbjct: 67 NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC +ARG + S E ++G ++ +
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ LS +YG D+ + L++ I DG +RIG P F E
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ ++ C + H+ +QSG L MNR+YT +++ +V L E + + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
FPGETDE+F +T + +KE + ++H+ ++ PR G +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTK 338
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 15/347 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFP ETDE F +T++L +E +F + + PR G N+
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANM 425
>gi|254431186|ref|ZP_05044889.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
gi|197625639|gb|EDY38198.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobium sp. PCC 7001]
Length = 476
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 172/345 (49%), Gaps = 20/345 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ ++ TFGC N++DSE MAG L A GY EAD+ L NTCT++ ++ + + +
Sbjct: 33 SYWITTFGCQMNKADSERMAGILEAMGYREAGAELEADLVLYNTCTIRDNAEQKVYSYLG 92
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + +G +V
Sbjct: 93 RQAQRKRANPNLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLETLLSQVEQGQQV 152
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ RR+ V +NV GC CTYC RG S E++
Sbjct: 153 VATEEHHILE-DITTARRDSSV-CAWVNVIYGCNERCTYCVVPSVRGQEQSRLPEAIRLE 210
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + A G KE L ++ AYGRD+ G L + + +G +R +
Sbjct: 211 MEGLAARGFKETTLLGQNIDAYGRDLPGITPEGRRRHTLTDLLQFVHDVEGIERIRFATS 270
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P V H+P QSG DAVL AM R YT+ +R +V + E +
Sbjct: 271 HPRYFTERLIDACAAL--PKVCEHFHIPFQSGDDAVLKAMARGYTVERYRRIVHRIRERM 328
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
P I+ D+I FPGETD F T+ L++E F QV+ + + PRP
Sbjct: 329 PDAAISADVIVAFPGETDAQFRNTLRLVEEIGFDQVNTAAYSPRP 373
>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
Length = 452
Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 180/345 (52%), Gaps = 22/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPG
Sbjct: 304 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
Length = 452
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 185/347 (53%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T + EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K+P L++AGCV Q G L+ + + +V G Q +R+ E++E+ +G++V
Sbjct: 69 AKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ + P L + V ++P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +++T+ E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSRGYTHEKYRRIINTVREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPG 348
>gi|419718717|ref|ZP_14246023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
gi|383305057|gb|EIC96436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
Length = 475
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 188/362 (51%), Gaps = 23/362 (6%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 21 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 77
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-G 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ V +V G
Sbjct: 78 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 137
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 138 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 197
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D +N +LL+ +
Sbjct: 198 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKINFAMLLDEVA 257
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 258 K---IDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 312
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 313 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 372
Query: 388 PG 389
G
Sbjct: 373 SG 374
>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. PCC 7002]
gi|229891029|sp|B1XQK7.1|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
Length = 451
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 181/356 (50%), Gaps = 28/356 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY T++ AD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K KP L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G +V
Sbjct: 68 AKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELD--LIMGPQHANRLQDLLEQVEGGSQV 125
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ D+ K RR+ V +NV GC CTYC RG S E++
Sbjct: 126 VATEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIRAE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 281
+ + G KEV L ++ AYGRD+ G N L + + V ++P G +R
Sbjct: 184 MEELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYTLTDLLYYVHDVP--GIERIRFA 241
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + E L + + L P V H+P QSG + VL AM R YT +R +++T+
Sbjct: 242 TSHPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMRRGYTHEKYRRIINTIRS 299
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
+P I+ D I FPGET+E F T+ L+ E F Q++ + + PRPG D+
Sbjct: 300 YMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPAATWDN 355
>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 438
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 182/351 (51%), Gaps = 20/351 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T++ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K+ L V GC+ Q ++ K + IV G I + E++EE +GH
Sbjct: 62 GELMRLKRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMD 345
>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
Length = 508
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 15/375 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE +AG L GY A + EAD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A +P + V GC+ Q RD +K+ V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKAGRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++ADGV E+ L ++ AYG DIG + + A +G +R
Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +D
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 400 LLSLLFSNYKFTVML 414
++ Y+ V L
Sbjct: 364 PKKVVQERYERLVAL 378
>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
DSM 16994]
gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
DSM 16994]
Length = 433
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 193/377 (51%), Gaps = 32/377 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKS-PSQSAMD 115
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINTC+V+ P
Sbjct: 2 SKKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLFS 61
Query: 116 TL--IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K A + V GC G +K V+ V G + + ++ +V+ + E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-RAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + + + A R + + + I++GC CT+C RG S + +V V
Sbjct: 121 VEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEV 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
R + +G KEV+L ++ YGR +N LL + A + RI T+P
Sbjct: 179 RKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSA-----VEGLERIRFTSP 233
Query: 286 -PFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
PF + E L+E A R+P + +H+P+QSGS +L AM R YT F L EL
Sbjct: 234 HPFHMDDEFLEEFA---RNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKLREL 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ---FLNLDSTE 399
VP + I+TDII FPGE+D DF T++++KE +F QV ++ PRP + F N+ +E
Sbjct: 291 VPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNVVDSE 350
Query: 400 LLSLLFSN---YKFTVM 413
L S S Y+ T++
Sbjct: 351 LGSFRLSTLQAYQDTIL 367
>gi|406914377|gb|EKD53564.1| hypothetical protein ACD_61C00012G0001, partial [uncultured
bacterium]
Length = 396
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 181/373 (48%), Gaps = 69/373 (18%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
++++ TFGC N+SDSE + G + GY D +EAD +INTC+V+ QSA D +
Sbjct: 11 SVFINTFGCQANKSDSERILGDYLSRGYTEADTWKEADEIVINTCSVR---QSAEDRVTG 67
Query: 120 ---------------KCKSAKKPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVE 163
C+ A+ +++ GC+ +++K L + QID ++ + E
Sbjct: 68 FLLNVEKFFDGKIRPACRKARPKIILTGCMLHFNEKEIKTL-------LPQIDEILPIGE 120
Query: 164 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ +R+ K +PI+ GC CTYC +RG S +
Sbjct: 121 V----------------GFNQKAIRKEKDKAFIPISSGCNSFCTYCIVPFSRGRERSRPL 164
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILL---NAIVAELPPDGSTMLR 279
E +VG + T+ A+G KE+ L ++ ++G +GV L + + ++ P +
Sbjct: 165 EDIVGEIETLAAEGYKEITLLGQNVNSWGLEKVGVALRKMFMDKDKFTPDIIPSNQSQYF 224
Query: 280 IGMTNPPFIL--------EHLKEIA---------------EVLRHPCVYSFLHVPVQSGS 316
PPF++ E +K+I+ E+ +P + F+H+PVQSGS
Sbjct: 225 KPQDTPPFVILLREIGKIEGIKKISFFTSNPWDFWDELIDEIASNPKIDRFIHLPVQSGS 284
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
+ +L MNR YT + ++++ + +P TDII GFPGET+EDF T+NL+K+ F
Sbjct: 285 NRILKLMNRGYTRESYLSLINQIKSKIPEAVFGTDIIVGFPGETEEDFQDTLNLVKDVGF 344
Query: 377 PQVHISQFYPRPG 389
++++ PRPG
Sbjct: 345 KVAFVARYSPRPG 357
>gi|359458947|ref|ZP_09247510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
sp. CCMEE 5410]
Length = 454
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 185/346 (53%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ +F ++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEAQFMNTMQLVEDIEFDLLNTAAYSPRPG 348
>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 467
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 101/314 (32%), Positives = 167/314 (53%), Gaps = 17/314 (5%)
Query: 93 SEEADIWLINTCTVKSPSQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD--LKELEGVS 148
+E+ + + +N CTVK + AM L+ K S P+ + GC P+ R+ L+ + V
Sbjct: 70 TEKPEAFYLNVCTVKG-NAGAMK-LLRKAASTFPGVPIYITGCAPKDFREEALRTVPHVQ 127
Query: 149 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRN-----KFVEILPINVGCL 203
++++D + ++ + ++ R D K RN FV I+ I GCL
Sbjct: 128 FTSLKELDASAILPTQSAQSPSSQINARTP----DSNKASRNVLRESPFVGIVNIEEGCL 183
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 263
AC +C T +G L S+ +++V +V+ ++ DG E+ L+ +D YG DIG NL L
Sbjct: 184 DACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCLEIQLTGQDCACYGFDIGTNLAELT 243
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
I+ + +G+ +R+GM NP +L + + + +Y F+H+PVQSGS+ VL AM
Sbjct: 244 QRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCFTDDRIYKFIHIPVQSGSENVLKAM 301
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
NR +T D+ T+ E ++TD+I G+PGET DFN T+ L+KE + +I++
Sbjct: 302 NRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGETAADFNDTLTLLKETRPTVCNITR 361
Query: 384 FYPRPGIQFLNLDS 397
F RPG L++
Sbjct: 362 FVTRPGTVAARLET 375
>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
Length = 438
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 183/352 (51%), Gaps = 20/352 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDE 346
>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
Length = 417
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 179/345 (51%), Gaps = 24/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGADEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 229 AENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 289 ETDRDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
Length = 417
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 177/337 (52%), Gaps = 19/337 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP
Sbjct: 229 AEYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D Q++ L++E + ++++++F RPG ++
Sbjct: 289 ETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADM 325
>gi|411120095|ref|ZP_11392471.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
gi|410710251|gb|EKQ67762.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
Length = 454
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 182/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ D E A++ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEKMGFEWADEPENANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + + +V G Q +++ ++E+ G++V
Sbjct: 69 AKRKQEQPDLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANQLESLLEQVFNGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TDPVHIME-DITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGVKVEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P + H+P QSG + VL AM R YT +R ++D +
Sbjct: 245 HPRYFTERLIRACAEL---PKLCEHFHIPFQSGDNEVLRAMGRGYTHERYRRIIDMIRSY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L++E F Q++ + + PRPG
Sbjct: 302 IPDAAISGDAIVGFPGETEAQFENTLKLVEEVGFDQLNTAAYSPRPG 348
>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
Length = 414
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 120/354 (33%), Positives = 193/354 (54%), Gaps = 28/354 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NTCTV +++ M +
Sbjct: 3 SYHLETYGCTANRGESRAIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLSRAR 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 177
+ +S LVV GC+ QG + +L+ ++ G ++ VV L G E
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTATPG 113
Query: 178 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
P LD V ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GKVGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 238 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
KE+ ++ +DTG YG D G L LL+ I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 297 EVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+V + +Y+FLH PVQSGSD VL M R++ + +FR VV+T + + +ATD I G
Sbjct: 224 DVFAANEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVETFDDRLDHWTLATDFITG 283
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYK 409
FP ETD D ++++L++E + ++++++F RPG D+ E+ L + K
Sbjct: 284 FPTETDADHEESMDLLRETQPERINVTRFSKRPGT-----DAAEMKGLGGTKKK 332
>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
denitrificans BC]
gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
K601]
gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
denitrificans BC]
gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
K601]
Length = 449
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 181/352 (51%), Gaps = 19/352 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS MA L +A Y TDN EEAD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ K H+
Sbjct: 62 DLGRVKHLKEKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 283
V + GVKEV L ++ AY +G + +LL VAE+P G +R +
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTS 238
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P L I R P + S LH+PVQ GSD +L AM R YT ++++ V L +
Sbjct: 239 HPNEFTPRL--IEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLKAIR 296
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
PGM +++D I GFPGET+EDF + + LI + +F F PRPG NL
Sbjct: 297 PGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANL 348
>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
Length = 451
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 180/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFVRSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++EE G +V
Sbjct: 69 AKRKHEQPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPVHIME-DITKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELARQDYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + + L P V H+P QSG + +L AM R YT +R +++ + E +
Sbjct: 245 HPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHQRYRQIIEKIRECM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEEQFENTLQLVEDLGFDQLNTAAYSPRPG 348
>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
marina MBIC11017]
gi|229890405|sp|B0C0E2.1|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
MBIC11017]
Length = 454
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 185/346 (53%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI--- 118
++ T+GC N++DSE MAG L GY ++N ++A++ L NTCT++ ++ + + +
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 119 AKCKSAKK--PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
AK K A+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+E F T+ L+++ +F ++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPG 348
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|347753157|ref|YP_004860722.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347585675|gb|AEP01942.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 450
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 177/341 (51%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E M GY TD AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QKLVNAGYKELVLTGIHTGGYGQDLKDYNLAMLLKDL--EEKVQGLKRVRISSIEASQLT 239
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTG 337
>gi|453052257|gb|EME99743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 507
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 187/376 (49%), Gaps = 16/376 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKS 108
S +P T+T ++T+GC N DSE ++G L GY +N+ E AD+ + NTC V+
Sbjct: 7 SHDVPSTKTYLIRTYGCQMNVHDSERLSGLLEDAGYVRAPENTTEGDADVVVFNTCAVRE 66
Query: 109 PSQSAMDTLIAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVE 160
+ + + + + K +P + V GC+ Q RD +K+ V +V G I ++
Sbjct: 67 NADNKLYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPV 126
Query: 161 VVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
++E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LLERARIQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKE 186
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 278
++ V ++A+GV E+ L ++ AYG DIG + + A +G +
Sbjct: 187 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERV 245
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R +P + + IA + P V LH+P+QSGSD VL AM R Y F ++D
Sbjct: 246 RFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIDK 303
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +D
Sbjct: 304 VRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAATMDGQ 363
Query: 399 ELLSLLFSNYKFTVML 414
++ + Y+ V L
Sbjct: 364 IPKEVVQARYERLVEL 379
>gi|17228807|ref|NP_485355.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc sp. PCC
7120]
gi|81772425|sp|Q8YXA3.1|MIAB_NOSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
Length = 454
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 180/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 405
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 168/301 (55%), Gaps = 11/301 (3%)
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 153
E+A++ +IN+C V ++ + + K K +V+AGC+ + S++ + S +
Sbjct: 15 EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73
Query: 154 QIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
+D VV+ V L G E R + + + L ++R N + I+ I+ GCLG C++C
Sbjct: 74 NLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKC-RLRENA-IAIVSISEGCLGKCSFC 131
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
TK ARG L S++++++V + G +E+ L+S+DTGAYG D G LP LL I +
Sbjct: 132 ATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELLRKI-S 190
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
E+ +G +R+GM NP + L E+ +Y FLH+PVQSG + +L M R +T
Sbjct: 191 EI--EGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRILEDMKRNHT 248
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ D+ VV+ + I+TDII GFP ET+E F ++ LIKE + V+I+++ R
Sbjct: 249 VEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARK 308
Query: 389 G 389
G
Sbjct: 309 G 309
>gi|390440335|ref|ZP_10228674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
gi|389836262|emb|CCI32800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
Length = 446
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
Length = 417
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 183/346 (52%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 299 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ET+ D Q++ L++E + +V++++F RPG D+ E+ L
Sbjct: 288 TETEHDHEQSMALLRETRPEKVNVTRFSKRPGT-----DAAEMKGL 328
>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
Length = 452
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 185/346 (53%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA + L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ K + + GC CTYC + RG S T +++ +
Sbjct: 129 TDAVHIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G N L + + V+++P G +R ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM R YT +R +++T+ + +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIETIRQYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGE++ F +T+NL+ + +F V+ + + PRPG
Sbjct: 303 PDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPG 348
>gi|307154937|ref|YP_003890321.1| MiaB family RNA modification protein [Cyanothece sp. PCC 7822]
gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
Length = 446
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 182/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY +++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KP L+VAGCV Q G + L+ + + +V G Q + + +++++ GH++
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVEDGHQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR V +NV GC C+YC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESRVSAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPQAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGVTATGRHLHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L I P V H+P QSG + +L AM R YT +R +++ + L+
Sbjct: 245 HPRYFTERL--IVACKELPKVCEHFHIPFQSGDNQILKAMKRGYTQEKYRQIIEKIRSLM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
Length = 441
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 176/339 (51%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P E + D +++L+ E + ++++++F RPG ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
Length = 417
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 179/346 (51%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDALEYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ EL L
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAELKGL 328
>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
Length = 458
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 179/346 (51%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNNAKVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ E++E+ L G++V
Sbjct: 69 AKRKHEEPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKELLEQVLDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELSHQGYKEITLLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P V H+P QSG + +L AM R YT +R ++DT+ +
Sbjct: 245 HPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I D I GFPGET++ F T+ LI++ F V+ + + PRPG
Sbjct: 303 PDASITADAIVGFPGETEQQFENTLKLIEDISFDLVNTAAYSPRPG 348
>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
Length = 453
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 20/345 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T GC N++DSE MAG L GY+ TD ++EAD+ L NTC+++ ++ + + + +
Sbjct: 11 HIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLGRQ 70
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K P LVVAGCV Q G L+ + + +V G Q ++R+ ++E+ G++V
Sbjct: 71 AKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLDHLLEQVFNGNQVSA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ RRN + + I GC +CTYC RG S T ++++ V
Sbjct: 131 TESAYIEE-DITTPRRNSSITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEVNN 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ GV I L ++ + +G +R ++
Sbjct: 190 LSQQGYKEITLLGQNIDAYGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFATSH 249
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L + L P V H+P QSG + +L AM R YT +R ++D + ++P
Sbjct: 250 PRYFSPRLIQACAEL--PKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDNIRAIMP 307
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I D I FPGET+ F T+ L+ + F V+ + + PRPG
Sbjct: 308 DASITADAIVAFPGETEAQFENTLRLVGDISFDLVNTAAYSPRPG 352
>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
Length = 438
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 183/352 (51%), Gaps = 20/352 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDE 346
>gi|373455512|ref|ZP_09547343.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
gi|371934774|gb|EHO62552.1| MiaB-like tRNA modifying enzyme [Dialister succinatiphilus YIT
11850]
Length = 434
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 173/341 (50%), Gaps = 24/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ DS+ M GY E+AD++++NTC+V S ++ + + A
Sbjct: 5 TLGCKVNQYDSDAMRTLFIRNGYTQAGEDEDADVYVVNTCSVTSIGDRKSRQMVRRIRRA 64
Query: 125 KKP--LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLL------ 174
+ VAGC Q + ++ E G IVGVQ +V+ VEE + + + L
Sbjct: 65 HPSAIIAVAGCYAQLAPEVFEKMGDVDVIVGVQNRSHIVDYVEEAMGRTDRKPLNETVDI 124
Query: 175 ----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
H + + +VR FV++ GC CT+C +ARG L S + V +
Sbjct: 125 MKVDHFENMSVDVSGEVRTRAFVKV---QEGCDNYCTFCIIPYARGKLKSRLQKDAVDEI 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R + A G +EV L+ G YG+D+ G +L L+ +V ++P +R+G +
Sbjct: 182 RKLAAQGYREVVLTGIHLGNYGKDLHDGTSLATLVAELV-KIP--NLLRIRLGSVESVEL 238
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L I + P V LH+P+QSGSDAVL MNR Y L F+ ++ L VPG+ +
Sbjct: 239 SEDLISIMQ--NEPKVCRHLHLPIQSGSDAVLKGMNRHYRLPQFKKLISELRAKVPGIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGET+E+F +T+ +KE +F +H+ + R G
Sbjct: 297 TTDLIVGFPGETEENFQETLETLKEIRFSGIHVFPYSRRTG 337
>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
Length = 438
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/341 (33%), Positives = 176/341 (51%), Gaps = 17/341 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ + T GC NQ +S MA L G+++ ADI++INTCTV S + + LI
Sbjct: 7 QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ ++ +VV GC Q +L+++ GV+ I+G + + E++++ G R+L
Sbjct: 67 RRASRQNPSAKIVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRVL 124
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L+ R F E L + GC C+YC +ARG S ++E + +
Sbjct: 125 VSDISRELNERGTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAGI 184
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
RT G KEV L+ GAYG D+ ++L LLNA E + +RIG P +
Sbjct: 185 RTFAERGFKEVVLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTEV 241
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L I+ + + V LH+P+QSG D VL AMNR Y+ +DFR+V++ L +P + I
Sbjct: 242 SDAL--ISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLDTDLPSICI 299
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFPGETD++F ++ H+ F PR G
Sbjct: 300 GTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSG 340
>gi|336323574|ref|YP_004603541.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Flexistipes sinusarabici DSM 4947]
gi|336107155|gb|AEI14973.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Flexistipes sinusarabici DSM 4947]
Length = 443
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 25/353 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+KTFGC N+ DS+ + +G+ ++ E AD ++NTC+V+ Q + + I +
Sbjct: 4 VYLKTFGCQMNEYDSQRILSVFRNYGFIPSEIPETADFAMLNTCSVREKPQHKVSSEIGR 63
Query: 121 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR 172
K K + V GCV Q G L + V ++G + ++R+ +++ L G V
Sbjct: 64 LKKIKLKNPEFKIGVCGCVAQQEGENILSDFPYVDFVIGTEAVNRLDVIIDAVLNGERVA 123
Query: 173 LLHRKKLPALDLPKVRR----NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ K + +P RR + +V I+ GC C+YC + RG S ++
Sbjct: 124 DVEMKS-ENISIPAFRREASPSAYVTIMK---GCNNYCSYCIVPYVRGSEVSRKSTEIID 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ +I GVKEV L ++ +YG+ D +N P LL I +G LR ++P
Sbjct: 180 EIKFLIDSGVKEVTLLGQNVNSYGKNLDENINFPKLLYMIDK---IEGLKRLRFVTSHPK 236
Query: 287 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ +E+ +R + FLH+P+QSGSD +L MNR+Y + + E +PG
Sbjct: 237 ---DFSREVIFAMRDIDKICEFLHLPLQSGSDRILRNMNRKYDYISYAEKISLAKEEIPG 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ +++D I GFPGET++DF T++ IKE ++ + ++ PRPG + LD T
Sbjct: 294 LSLSSDFIVGFPGETEKDFEDTISAIKEIEYESLFAFKYSPRPGTKAEKLDDT 346
>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 435
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 171/344 (49%), Gaps = 20/344 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T IY T GC NQ +S MA GY + D + AD+++INTCTV +
Sbjct: 3 TAAIY--TLGCKVNQYESAAMADLFRRAGYRVVDFEQPADVYIINTCTVTHLGDRKSRQM 60
Query: 118 IAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
I + V+A GC Q S ++ E+ GV+ +VG R+V++VEE G +
Sbjct: 61 IRRAAKQNPAAVIAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPV 119
Query: 174 LHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ A D LP + K L I GC C YC +ARG + S E++V
Sbjct: 120 QAVADVMAKDCFDELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVR 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+I G +E+ L+ GAYG+D+ +NL L+ + A LP G T LR+G P
Sbjct: 180 SATQLIQQGYQEIVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L I V HP + LH+P+QSG D +L+ M R YT F ++D + + + G
Sbjct: 237 HDINQQL--ITAVANHPNICRHLHIPLQSGDDQILAGMQRRYTAGQFLELIDHIKQTIAG 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ I +D+I GFPGET+ F T+ + F +H+ ++ PR G
Sbjct: 295 VAITSDVIVGFPGETEAHFQNTMQTVSRAAFASIHVFKYSPRKG 338
>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
Length = 441
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 113/339 (33%), Positives = 176/339 (51%), Gaps = 19/339 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ D ++AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 178
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 297
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 298 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
P E + D +++L+ E + ++++++F RPG ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
Length = 438
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 175/343 (51%), Gaps = 19/343 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +SE M GY D ++AD+++INTCTV + S +I
Sbjct: 4 KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63
Query: 119 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLK 167
K ++ K + V GC Q S ++ +EGV +V G Q +++V+ V E +K
Sbjct: 64 RKAIRQNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIK 123
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+V L R LD+ + RN L I GC CTYC +ARG + S T ES++
Sbjct: 124 VADVMKLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVL 180
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ ++++ G E+ L+ T YG+D + LL + ++ G LRI
Sbjct: 181 KQAQSLVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMS 238
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
I + + ++ + P + LH+P+QSG DA L MNR YT ++F + L E +P +
Sbjct: 239 QITQEIIDL--IAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLPSL 296
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TD+I GFPGET+E+F QT I++ F Q+H+ + R G
Sbjct: 297 SVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKG 339
>gi|448474662|ref|ZP_21602521.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
gi|445817969|gb|EMA67838.1| MiaB-like tRNA modifying enzyme [Halorubrum aidingense JCM 13560]
Length = 439
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 29/344 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GCS N+ +S + L G+ + E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPAEGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVV----EVVEETLKGHEVRL 173
+ + LVV GC+ QG + +E E ID + EV L G E
Sbjct: 63 ELAAETSDLVVTGCMALAQGEQ-FREAE---------IDAEILHWDEVPTYALNG-ECPT 111
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ P LD V ILPI GC+ C+YC TK A G + S +VE V + R +
Sbjct: 112 VTPDAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARAL 164
Query: 234 IADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I
Sbjct: 165 VHAGAKEIRVTGQDTGVYGWDNGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIH 221
Query: 293 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+E+ V R+ +Y+F+H PVQSGSD VL+ M R++ + FR VV + + ++TD
Sbjct: 222 EELVGVFARNEELYNFIHAPVQSGSDEVLADMRRQHRVDKFREVVAEFDDRLDHWTLSTD 281
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
I GFP ET D ++++L+ E + ++++++F RPG ++
Sbjct: 282 FIVGFPTETAADHERSMDLLAEVRPEKINVTRFSKRPGTDAADM 325
>gi|150400142|ref|YP_001323909.1| MiaB-like tRNA modifying protein [Methanococcus vannielii SB]
gi|150012845|gb|ABR55297.1| MiaB-like tRNA modifying enzyme [Methanococcus vannielii SB]
Length = 421
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 173/329 (52%), Gaps = 5/329 (1%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY++ +GC+ N +D+E + + F + +T + ++DI ++NTC V+ ++ M + I
Sbjct: 7 IYIEGYGCTLNTADTEIIKNSIKEFQNFEITTDLNDSDIIVVNTCIVRQETEHRMISRIE 66
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
KS K +VVAGC+ + E +V ++ ++ + ++ + L
Sbjct: 67 YFKSLNKKVVVAGCMAKALPKKIEYFSDCMVLPREAQNSGNILFKKFIENKEKTNFENNL 126
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
L K+ + +PI+ GCLG C+YC K ARG L SY + +V + I G K
Sbjct: 127 SE-KLNKLSSKGLISPMPISEGCLGNCSYCIVKKARGTLESYDRKLIVKKAMEFINSGTK 185
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
+ ++++DT YG D NL L++ I +E+P + +RIGM + F L E+ E
Sbjct: 186 CLLITAQDTACYGYDNNDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPILDELVESF 242
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ V FLH+P+QSG + VL M R YT+ +F +V++ + + TD+I GFP E
Sbjct: 243 KSEKVVKFLHLPIQSGDNQVLKDMGRNYTVDEFISVLNEFKRKIKDLNFTTDVIVGFPSE 302
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
T++ FN T+ ++K+ K H +++ R
Sbjct: 303 TEDAFNNTLEVLKKIKPDFTHGAKYSQRK 331
>gi|397662316|ref|YP_006503016.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
gi|394350495|gb|AFN36409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
Length = 469
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/351 (34%), Positives = 185/351 (52%), Gaps = 25/351 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ SQ +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKSQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPG
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPG 372
>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
Length = 454
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 179/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFCEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR +
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRHY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
Length = 417
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 177/345 (51%), Gaps = 24/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++ V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICEI--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + ++TD I GFP
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDSALDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ EL L
Sbjct: 289 ETDHDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAELKGL 328
>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
erythraeum IMS101]
gi|123057124|sp|Q119H9.1|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
IMS101]
Length = 451
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 183/348 (52%), Gaps = 28/348 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G +++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
+ K+P L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQV 126
Query: 172 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ K RR+ K + I GC CTYC RG S T E++ +
Sbjct: 127 VATEPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEM 185
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 282
+ G +E+ L ++ AYGRD+ G N + + V ++P G +R
Sbjct: 186 EELGRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFAT 243
Query: 283 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 244 SHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRE 300
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
L+P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPG
Sbjct: 301 LMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPG 348
>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
Length = 417
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 176/336 (52%), Gaps = 17/336 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKKLP 180
L + GC+ L + E + V Q+ EV E G E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDSQVLHWDEVPEAVTNG-ECPTTTPDAEP 118
Query: 181 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 240
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE
Sbjct: 119 ILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKE 171
Query: 241 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 299
+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 172 IRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFA 229
Query: 300 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP E
Sbjct: 230 EYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALEYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD D Q++ L++E + ++++++F RPG ++
Sbjct: 290 TDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADM 325
>gi|291566663|dbj|BAI88935.1| tRNA-i(6)A37 modification enzyme MiaB [Arthrospira platensis
NIES-39]
Length = 452
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 179/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G ++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G +V
Sbjct: 69 AKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFEGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPINI-VEDITKPRRDSNITAW-VNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 187 ELARAGYKEVTLLGQNIDAYGRDLPGSTPDGRHQHTLTDLLYYVHDIP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM R YT +R +++T+ E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLRAMARGYTHEKYRRIINTIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 302 IPDASISADAIVGFPGETEAQFENTLKLVDDIAFDLLNTAAYSPRPG 348
>gi|310659093|ref|YP_003936814.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825871|emb|CBH21909.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 454
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 180/345 (52%), Gaps = 21/345 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +++ M GY +TD AD+++INTCTV S S +I + K
Sbjct: 29 TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRRAKKH 88
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEVR---LLHR 176
+ ++A GC Q S D + +EGV++V G +++V VE+ +K H V ++ +
Sbjct: 89 NENAIIAVVGCYSQKSPDEVIAIEGVNLVMGTSDRNKIVTEVEKLDVKDHVVEVEDIMKQ 148
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ AL + + K L I GC C+YC + RG + S ++ ++ V+++ +
Sbjct: 149 RVFEALSIEETY-GKTRAFLKIQEGCDRFCSYCIIPYTRGPVRSRSINDIISEVKSLAKN 207
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----LEHL 292
G KEV L+ +YG+D+G L++ I A DG +R P I L L
Sbjct: 208 GYKEVVLTGIHVASYGKDLGD--IRLIDVIKAINNIDGIHRIRTSSVEPLIITDDFLSEL 265
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
KEI + H H+ +QSGSD+VL MNR Y +++++ VD + ++ P I TDI
Sbjct: 266 KEIDKFCPH------FHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKIYPDAAITTDI 319
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
I GFPGE+D +F +T +++ ++HI +F PR G + +D+
Sbjct: 320 IVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDN 364
>gi|354569012|ref|ZP_08988172.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
gi|353539224|gb|EHC08716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
Length = 454
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 183/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNQADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLQQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYVHDVP--GVERIRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L + AE+ P V H+P QSG + VL M R YT +R +++T+ E +
Sbjct: 246 PRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMARGYTHEKYRRIINTIREYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPG
Sbjct: 303 PDAAISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPG 348
>gi|381162577|ref|ZP_09871807.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
gi|379254482|gb|EHY88408.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
Length = 496
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 186/373 (49%), Gaps = 25/373 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYA + E+ D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYAHAADGEDPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVQRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 EVRLLHRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L AL+ LP R + + + I+VGC CT+C RG
Sbjct: 122 EAQV---EILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPG 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGM 282
++ V ++A+GV EV L ++ +YG + G LL A + DG +R
Sbjct: 179 EILAEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRACGS---VDGLERVRFTS 235
Query: 283 TNPP-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
+P F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D + E
Sbjct: 236 PHPAAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVRE 292
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELL 401
+P I TDII GFPGET+EDF QT+ ++++ +F Q+ PRPG ++
Sbjct: 293 AMPDAAITTDIIVGFPGETEEDFEQTLEVVRQARFSSAFTFQYSPRPGTPAAEMEDQVPK 352
Query: 402 SLLFSNYKFTVML 414
+++ Y V L
Sbjct: 353 AVVQERYDRLVEL 365
>gi|455652050|gb|EMF30731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
gancidicus BKS 13-15]
Length = 508
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 187/384 (48%), Gaps = 17/384 (4%)
Query: 45 LSKTGSLSPKIP--GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWL 100
++ + SP + T T ++T+GC N DSE +AG L GY A + +AD+ +
Sbjct: 1 MTSSSDRSPAVDVLSTRTYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPQGSDGDADVVV 60
Query: 101 INTCTVKSPSQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GV 152
NTC V+ + + + + K A +P + V GC+ Q RD +K V +V G
Sbjct: 61 FNTCAVRENADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGT 120
Query: 153 QQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCK 210
I ++ ++E E ++ + L A LP R + + + I+VGC CT+C
Sbjct: 121 HNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCI 180
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 270
RG ++ + ++A+GV E+ L ++ AYG DIG + + A
Sbjct: 181 VPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACG 239
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
DG +R +P + + IA + P V LH+P+QSGSDA+L AM R Y
Sbjct: 240 TIDGLERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAILKAMRRSYRQE 297
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390
F +++ + +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPG
Sbjct: 298 RFLGIIEKVRAAIPHAAISTDIIVGFPGETEEDFQQTLHVVREARFAQAFTFQYSKRPGT 357
Query: 391 QFLNLDSTELLSLLFSNYKFTVML 414
+D ++ Y+ V L
Sbjct: 358 PAAEMDGQIPKQVVQERYERLVAL 381
>gi|56751740|ref|YP_172441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
elongatus PCC 6301]
gi|81301183|ref|YP_401391.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
elongatus PCC 7942]
gi|81561774|sp|Q5N199.1|MIAB_SYNP6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123755327|sp|Q31KL5.1|MIAB_SYNE7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56686699|dbj|BAD79921.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81170064|gb|ABB58404.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus elongatus
PCC 7942]
Length = 452
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 182/350 (52%), Gaps = 22/350 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY ++ + +AD+ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEDLGYIWSEEANDADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++ + G +V
Sbjct: 68 AERKRQQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLADLLAQVEAGSQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ A D+ + RR+ + +NV GC CTYC + RG S ++ +
Sbjct: 128 TEEVEI-AEDITQPRRDSTITAW-VNVIYGCNERCTYCVVPNVRGREQSREPAAIRAEIE 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ A G +E+ L ++ AYGRD+ G +L L + + G +R ++P
Sbjct: 186 QLAAQGYREITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYTIHDVPGIERIRFATSHP 245
Query: 286 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ E L + AE+ P V + H+P QSG + VL AM R YT+ + +V+ + +++P
Sbjct: 246 RYFTERLIRACAEL---PKVCEYFHIPFQSGDNDVLKAMARGYTVERYLRIVEQIRDIIP 302
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394
I+ D I FPGET+E F T+ L+++ F V+ + + PRPG N
Sbjct: 303 DAAISADAIVAFPGETEEQFENTLKLVEQVGFDLVNTAAYSPRPGTPAAN 352
>gi|376003145|ref|ZP_09780960.1| isopentenyl-adenosine A37 tRNA methylthiolase [Arthrospira sp. PCC
8005]
gi|423067069|ref|ZP_17055859.1| radical SAM methylthiotransferase, MiaB/RimO family [Arthrospira
platensis C1]
gi|375328470|emb|CCE16713.1| isopentenyl-adenosine A37 tRNA methylthiolase [Arthrospira sp. PCC
8005]
gi|406711355|gb|EKD06556.1| radical SAM methylthiotransferase, MiaB/RimO family [Arthrospira
platensis C1]
Length = 452
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 179/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G ++ +ADI L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILDEMGLTFVEDPNQADIVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G +V
Sbjct: 69 AKRKQENPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFEGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPINI-VEDITKPRRDSNITAW-VNVIYGCNERCTYCVVPNVRGTEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 187 ELARAGYKEVTLLGQNIDAYGRDLPGSTPDGRHQHTLTDLLYYVHDIP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM R YT +R +++T+ E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTHEKYRRIINTIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 302 IPDASISADAIVGFPGETEAQFENTLKLVDDIGFDLLNTAAYSPRPG 348
>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
Length = 446
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|365158901|ref|ZP_09355090.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423411893|ref|ZP_17389013.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|423432321|ref|ZP_17409325.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|363626189|gb|EHL77190.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401103961|gb|EJQ11938.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|401117077|gb|EJQ24915.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
Length = 450
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|297544398|ref|YP_003676700.1| MiaB-like tRNA modifying protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842173|gb|ADH60689.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 449
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 178/338 (52%), Gaps = 18/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E MA GY + D E+AD+++INTCTV +S +S + A+ K
Sbjct: 21 TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKARKK 80
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ +V GC Q S +D+ L V I +G + D++VE+VEE + H+ ++
Sbjct: 81 NPNAVVVAVGCYVQVSPKDVFSLPEVDIAIGTKNKDKIVELVEEFTQKHQKLSVVNNIMT 140
Query: 176 RKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+K+ ++ R +V+I GC CTYC +ARG + S E ++ V+
Sbjct: 141 QKEYEEFEVTAYTERTRAYVKIQD---GCNQYCTYCIIPYARGPVRSREPEKILEEVKRF 197
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 198 ADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKRIHEIDGIKRIRLSSIEPVFLTEEF- 254
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ E+ + P + HV +QSG D L M R YT ++++V+D L + + + I TD++
Sbjct: 255 -VKEIAKLPKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLRKYIKDVAITTDVM 313
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET+E+F +T ++E F ++H+ ++ R G +
Sbjct: 314 VGFPGETEEEFLETYKFVEEICFSKMHVFKYSRRKGTR 351
>gi|284048550|ref|YP_003398889.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 442
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/343 (32%), Positives = 175/343 (51%), Gaps = 29/343 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N+SDSE+ AGQLS GY T++ +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKIGEMKQVK 69
Query: 126 -----KPLVVAGCVPQ--GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRK 177
K L V GC+ Q G LK+ V + +G ++ ++++ L H+ + RK
Sbjct: 70 REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQDYL--HQTQ---RK 124
Query: 178 KLPALDL---PK------VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
DL P+ VR++ + +PI GC CTYC + RG S + E++
Sbjct: 125 SGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRERSRSAEAICE 184
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 286
+R + G +E L ++ +YG+D G LL + A +P G +R ++P
Sbjct: 185 EIRKAVDQGYREFTLLGQNVNSYGKDRGDKDAFAALLRQVDA-IP--GVERVRYMTSHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E L +H C + H+PVQSGS ++ AMNR YT + +VDT+ + VP
Sbjct: 242 DMSEELIRTVAESKHVCKH--FHIPVQSGSTRIMQAMNRGYTRESYLHLVDTIRKYVPEA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFPGET+EDF +T++L + + + R G
Sbjct: 300 VLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSG 342
>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8801]
gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
Length = 451
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 180/344 (52%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 14 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 73
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 74 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 133
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 134 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 191
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 192 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 251
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 252 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 309
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPG
Sbjct: 310 ASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPG 353
>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217961800|ref|YP_002340370.1| MiaB family RNA modification protein [Bacillus cereus AH187]
gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|375286316|ref|YP_005106755.1| hypothetical protein BCN_4222 [Bacillus cereus NC7401]
gi|384182130|ref|YP_005567892.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402555555|ref|YP_006596826.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
gi|423354803|ref|ZP_17332428.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|423373811|ref|ZP_17351150.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|423570550|ref|ZP_17546795.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|423574010|ref|ZP_17550129.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|423604040|ref|ZP_17579933.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354843|dbj|BAL20015.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085807|gb|EJP94041.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|401095212|gb|EJQ03272.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|401203746|gb|EJR10581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|401212579|gb|EJR19322.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|401245726|gb|EJR52079.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|401796765|gb|AFQ10624.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
Length = 450
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 485
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 187/362 (51%), Gaps = 23/362 (6%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 31 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 87
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-G 151
NTCTV+ + + + + K +K+ + + GC+ Q + ++++++ V +V G
Sbjct: 88 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 147
Query: 152 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 148 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 207
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 267
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D N +LL+ +
Sbjct: 208 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVA 267
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 268 K---IDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 322
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 323 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 382
Query: 388 PG 389
G
Sbjct: 383 SG 384
>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 442
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 175/343 (51%), Gaps = 27/343 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N+ DSE +AG L GY T+ E ADI L+NTCT++ ++ + + + K
Sbjct: 11 TYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQLKEY 70
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q ++E+ I G I +V E++++ K E V
Sbjct: 71 KRKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVE 130
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +++ DLP R ++ + I GC CTYC + RG S +E+++
Sbjct: 131 VWDQEEGLIPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEK 190
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A+GVKEV L ++ +YG D+ ++ P+LL + D +R ++P E
Sbjct: 191 LAAEGVKEVTLLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSE 247
Query: 291 HL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
L K + +V +H +H+P+QSGS+ +L MNR Y+ + V + +P
Sbjct: 248 KLLLAIKNLEKVAKH------IHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQNKMPEA 301
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+TD I GFPGE+DEDF QT+ L+KE +F + + PR G
Sbjct: 302 AISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSG 344
>gi|90420542|ref|ZP_01228449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
manganoxydans SI85-9A1]
gi|90335270|gb|EAS49023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 184/366 (50%), Gaps = 37/366 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +++KT+GC N DS+ M L+ GY T+ E+AD+ L+NTC ++ + + +
Sbjct: 17 TRKVFIKTYGCQMNVYDSQRMGDALARDGYQPTEVIEDADLVLLNTCHIRERAAEKIYSE 76
Query: 118 IAKCK--SAKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ + K A+K + VAGCV Q G + V +V G Q R+ E +
Sbjct: 77 LGRIKLLKAEKAEQGVEMRVAVAGCVAQAEGQEIIDRAPVVDLVIGPQTYHRLPEALARV 136
Query: 166 LKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+G +V + H LP + P++R L + GC CT+C + RG
Sbjct: 137 ARGDKVVETDYAVEDKFRH---LPKVTAPQIRTRGVTAFLTVQEGCDKFCTFCVVPYTRG 193
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVAEL 270
S + ++G RT+ A GV+EV L ++ + GRDIG L LL A+ AE+
Sbjct: 194 SEVSRPLTQIMGEARTLAAAGVREVTLLGQNVNGWSGQDEAGRDIG--LGGLLRAL-AEI 250
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
P G LR ++P + + L IA P + +LH+PVQSGSD +L AMNR +T +
Sbjct: 251 P--GFARLRYTTSHPRDMDDDL--IAAHRDLPALMPYLHLPVQSGSDRILKAMNRRHTGA 306
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390
D+ ++D + + P + ++ D I GFPGETD DF T+ L+ E ++ ++ RPG
Sbjct: 307 DYLRLLDRIRQARPDIALSGDFIVGFPGETDADFEDTMELVSEVRYASAFSFKYSARPGT 366
Query: 391 QFLNLD 396
+D
Sbjct: 367 PGATMD 372
>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
Length = 438
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 183/352 (51%), Gaps = 20/352 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61
Query: 119 AKCKSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDE 346
>gi|206890169|ref|YP_002248877.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|229891018|sp|B5YKW2.1|MIAB_THEYD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206742107|gb|ACI21164.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 431
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 177/345 (51%), Gaps = 15/345 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DSE M G L G+ D ++ADI + NTC ++ ++ + +
Sbjct: 5 AVYIKTFGCQMNEHDSERMLGILGTKGFIEVDEPKKADIVIFNTCAIRHKAEQKFFSSLG 64
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV 171
+ K KK ++VAGC Q G + L +L + I+G + V+E + E H +
Sbjct: 65 RVKHLKKKNPQLKIIVAGCSAQLQGEKLLNKLPYIDYIIGPDNL-HVIENIIENQVSHRI 123
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ ++LP R++ + I GC CTYC + RG S V+ ++ +
Sbjct: 124 FTDENPEVANINLPVKRKDCVKAWVNIIYGCNNYCTYCVVPYTRGKERSRPVDDIIKEIS 183
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
+ G KEV L ++ +Y +D N P+LL + +G +R ++P + +
Sbjct: 184 LLAEQGYKEVTLLGQNVNSY-KDGNTNFPLLLEKVEK---IEGIKRIRFITSHPKDLSKE 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L ++ + + C + +H+P+Q+GS+ +L MNR+YT ++ + L E +P + I +D
Sbjct: 240 LVDVMKDYKKICEH--IHLPLQAGSNKILKLMNRKYTYEEYFEKICWLREAIPDIAITSD 297
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
II GFP E EDF +T+N +KE +F + +F PR G LD
Sbjct: 298 IIVGFPQEQHEDFEKTINALKEIRFDGIFAFKFSPRLGTAAAKLD 342
>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
Length = 417
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 178/346 (51%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+ E + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEAFDERLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ EL L
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAELKGL 328
>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
Length = 438
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 175/349 (50%), Gaps = 27/349 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + +M T GC NQ ++E M G GY + E AD+++INTC+V S
Sbjct: 8 GVKAAFM-TLGCKVNQFETETMEGLFRVRGYDIVPFEERADVYVINTCSVTHLSDRKSRQ 66
Query: 117 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 169
LI + + V GC Q +++ L+GV +V G ++ R+V+ VE +L+
Sbjct: 67 LIRRAARTNPAACIAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGA 126
Query: 170 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 127 FGTITDIMQARVF--EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 180
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
+ ++ +R ++ G EV L+ GAYG D+ P L +A L G LR+G
Sbjct: 181 ELSAVAREMRLLVDAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLG 239
Query: 282 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+E ++ E++R P + LH+P+Q+GSDAVL AMNR YT + F +V +
Sbjct: 240 SLES---VELSADLLELMRTEPRFAAHLHLPLQAGSDAVLRAMNRHYTTAQFAQLVMEVR 296
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
VPG+ I+TDII GFPGET+ DF ++ ++ F ++H+ + R G
Sbjct: 297 AAVPGVAISTDIIVGFPGETEADFAAGMDFVRRMGFARMHVFPYSARRG 345
>gi|407777910|ref|ZP_11125177.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Nitratireductor pacificus pht-3B]
gi|407300306|gb|EKF19431.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Nitratireductor pacificus pht-3B]
Length = 470
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 184/368 (50%), Gaps = 37/368 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P + +++KT+GC N DS+ M+ L+A GYA T+ E+AD+ L+NTC ++ + +
Sbjct: 23 PDGKKVFVKTYGCQMNVYDSQRMSDALAADGYAPTERIEDADLILLNTCHIREKAAEKVY 82
Query: 116 TLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVE 163
+ + + + K+ + VAGCV Q G L+ V +V G Q R+ VV+
Sbjct: 83 SELGRIRQLKQERGALGRETVVGVAGCVAQAEGQEILRRAPAVDLVIGPQTYHRLPMVVK 142
Query: 164 ETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
G ++ + H LPA VR L + GC CT+C +
Sbjct: 143 RARGGEKIVETDYAIEDKFEH---LPAPQRKVVRARGVTAFLTVQEGCDKFCTFCVVPYT 199
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT------GAYGRDIGVNLPILLNAIVA 268
RG S +V +V + GV+E+ L ++ GA GR+ G+ + +A
Sbjct: 200 RGSEVSRSVAQIVAEAEQLAEAGVRELTLLGQNVNAWHGEGADGREWGLGELLFR---LA 256
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
E+P G LR ++P + + L IA P + +LH+PVQSGSD +L AMNR++T
Sbjct: 257 EIP--GLDRLRYTTSHPRDMDDAL--IAAHRDLPSLMPYLHLPVQSGSDRILKAMNRKHT 312
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
D+R ++D + P + ++ D I GFPGETD DF T+ LI++ + Q ++ PRP
Sbjct: 313 GDDYRRLIDRIRTARPDIAMSGDFIVGFPGETDADFEDTMRLIRDVTYAQAFSFKYSPRP 372
Query: 389 GIQFLNLD 396
G ++D
Sbjct: 373 GTPGADMD 380
>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
Length = 452
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 17/377 (4%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
++ I +T +++TFGC N DSE ++G L + G +ADI + TC V+ +
Sbjct: 1 MNSSILSGKTYFIRTFGCQMNLHDSERVSGLLDSLGCLEVGEPSDADIVIFMTCCVREAA 60
Query: 111 QSAMDTLIAKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 161
+ + + CKS ++ + V GC+ Q G L L+ V ++ G I V E+
Sbjct: 61 DTRLYGQCSSCKSLPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGEL 120
Query: 162 VEETLKG--HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+ + + H VR + A +P R F +PI GC C+YC + RG
Sbjct: 121 IAQAFEDGDHHVRCEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREK 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V ++ V+E+ L ++ +YGRDI P + + A + G +R
Sbjct: 181 SRPFEQIVDEVAGLVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIR 238
Query: 280 IGMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
++P +L E + +A+V P V LH+ VQSGS VL MNR YT + +V +
Sbjct: 239 FTSSHPKDLLPETINAMADV---PAVMPHLHLAVQSGSTRVLKEMNRRYTREQYIDLVRS 295
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
+ E +PG+ + TDII GFPGET+EDF QT++L +E ++ Q + R G +D
Sbjct: 296 IREKIPGIALTTDIIVGFPGETEEDFLQTLSLAEEVRYAQAFTFIYSKREGTPAAMIDDP 355
Query: 399 ELLSLLFSNYKFTVMLI 415
++ + V +I
Sbjct: 356 TPHDVILDRFNRLVSVI 372
>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
Length = 505
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 183/375 (48%), Gaps = 15/375 (4%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSP 109
S + GT T ++T+GC N DSE ++G L GY A + +AD+ + NTC V+
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 SQSAMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + + K A +P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 162 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVR 245
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTE 399
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +D
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 400 LLSLLFSNYKFTVML 414
++ Y+ V L
Sbjct: 364 PKKVVQERYERLVEL 378
>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
ATCC 51142]
gi|354553405|ref|ZP_08972711.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
gi|229890507|sp|B1WU96.1|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
gi|353554122|gb|EHC23512.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
Length = 448
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 174/343 (50%), Gaps = 18/343 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 11 HITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYSYLGRQ 70
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 71 AKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC + RG S T E++ +
Sbjct: 131 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYAEMEL 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ G KEV L ++ AYGRD+ G + L + + G LR ++P
Sbjct: 190 LGKQGYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFATSHPR 249
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ E L + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 250 YFTERLIKACHEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRHIIDKIREYMPDA 307
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPG
Sbjct: 308 SISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPG 350
>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
Length = 470
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 171/345 (49%), Gaps = 18/345 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N++DSE MAG L + GY + + EAD+ L NTCT++ ++ + + +
Sbjct: 27 TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86
Query: 120 KCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ L+VAGCV Q G+ L+ + + +V G QQ +R+ ++ + G +V
Sbjct: 87 RQAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENGQQV 146
Query: 172 RLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + D+ RR V + + GC CTYC RG S ES+ +
Sbjct: 147 -IATEESYILEDITNARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSRLPESIKMEM 205
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLP--ILLNAIVAEL----PPDGSTMLRIGMTN 284
+ G +EV L ++ AYGRD+ P N + A L G +R ++
Sbjct: 206 EILATQGFREVTLLGQNVDAYGRDLAGISPEGRRHNTLTALLYFVHEVKGINRIRFATSH 265
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L E L C + H+P QSG D VL M R Y + + +VD + +P
Sbjct: 266 PRYFTERLIEACSNLSKVCEH--FHIPCQSGDDEVLKTMARGYNVDRYYRIVDRIRSRMP 323
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ DII FPGETD + +T+ L+++ F QV+ + + PRP
Sbjct: 324 DASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPN 368
>gi|157736509|ref|YP_001489192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arcobacter
butzleri RM4018]
gi|229890442|sp|A8ERE9.1|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
Length = 436
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 16/390 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSA 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INTC+V+
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 MDTLIAKCKSAKK---PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 167
+ + I + KK + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G V + + + NK+ + I+VGC CTYC RG S E +V
Sbjct: 119 GA-VEVSIDNDESTYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMIV 177
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 178 EQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLERIRFTSPHP 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP ++
Sbjct: 238 LHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNLR 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSN 407
I TDII FPGET EDF T++++++ KF Q+ ++ PRPG + LNL EL + S
Sbjct: 298 ITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGSQ 357
Query: 408 YKFTVMLISILVKLHYFSLDDQRNVLFGMT 437
LI L++LH L++ L G T
Sbjct: 358 -----RLID-LIELHKRYLEESMPKLIGET 381
>gi|258516358|ref|YP_003192580.1| MiaB family RNA modification protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
DSM 771]
Length = 435
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 175/344 (50%), Gaps = 20/344 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T+ + T GC NQ ++ + + GY+ D +E A +++INTCTV S L
Sbjct: 3 SKTVAVATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKSRQL 62
Query: 118 IAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-- 171
I + V+A GC Q S +L L V +VG D++V++VE + K ++
Sbjct: 63 IRRAVRTNPEAVIAVTGCYAQTSPGELMSLPEVDLVVGTSDRDKIVDLVEASSKAEKINA 122
Query: 172 -----RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ ++LPA + + L I GC C+YC +ARG L S E++
Sbjct: 123 VADIEKACFYEELPA----PAGQGRVRAYLKIQEGCRNFCSYCIIPYARGPLRSRQPEAV 178
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNP 285
+ +++A G KE+ L+ TGAYG D+ L AIV +L G + LR+ P
Sbjct: 179 LNEAESLLAAGFKEIVLTGIQTGAYGVDLPAKTS--LAAIVEKLLRISGLSRLRLSSIEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ L E+ +L LH+P+QSGSD VL M R YT + +++ L E +P
Sbjct: 237 NDLSPELIEL--ILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKMPN 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ + TDI+ GFPGET+EDF Q + IK+ F +H+ ++ PR G
Sbjct: 295 LAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRG 338
>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|399114834|emb|CCG17630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis 14/56]
Length = 469
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 185/351 (52%), Gaps = 25/351 (7%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NTC+++ +Q +
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKAQEKVF 88
Query: 116 TLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + KK + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 168 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 284 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPG
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPG 372
>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
Length = 435
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 19/337 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ ++E M G GY + + AD+++INTC+V + +I +
Sbjct: 8 TLGCKVNQFETEIMEGLFKQRGYEMVPFDQVADVYVINTCSVTHLGEKKSRQIIRRAIRL 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEET--------LKGHEVR 172
+ K + VAGC Q S ++++ +EGV IVG Q R+V++VE+ + + ++
Sbjct: 68 NPKAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVTNIMK 127
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + +P D P R L I GC CTYC +ARG L S + S++
Sbjct: 128 AEYFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQETEK 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+IA G KE+ L+ GAYGRD+ + L + + A L G LR+G I + L
Sbjct: 184 LIAAGFKEIVLTGIHLGAYGRDMEDEIT-LADVVRAILKIQGLVRLRLGSLESIEISDEL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IA + + + S LH+P+Q+G VL AMNR YTL +++ ++ + V + I+TDI
Sbjct: 243 --IALMKQDDRLCSHLHLPLQAGDATVLKAMNRHYTLGEYQQLIANIRNKVEDIAISTDI 300
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGET E FN + +++ F ++HI + R G
Sbjct: 301 IVGFPGETPEMFNNALAFVEKMNFSRMHIFPYSRRSG 337
>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
Length = 455
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 22/408 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T ++KTFGC N DSE + G L G +++++ADI + TC+V+ + +
Sbjct: 10 KTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 119 AKCKSA------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ SA K+ + + GC+ Q G K++ V +V G + V ++
Sbjct: 70 SAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLSAAFADD 129
Query: 170 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ V K + DLP R F +PI GC CTYC + RG S T E+
Sbjct: 130 DDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+VG ++ADGV+E+ L ++ +YGRD+ P + A + G LR +NP
Sbjct: 190 VVGECERLVADGVREITLLGQNVNSYGRDL-YGTPRFAELLRA-VGKTGIERLRFTSSNP 247
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + IA + P V LH+ VQSGS +L MNR YT ++ +V L +P
Sbjct: 248 KDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDLVHRLKAAMPD 305
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI---QFLNLDSTELLS 402
+ +TDII GFPGET+EDF QT++L+KE + + + RPG +F + S E++
Sbjct: 306 IAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKFEDNTSHEVIQ 365
Query: 403 LLFSNYKFTVMLISILVKLHYFSLDDQRNVLFGMTKQFHLYLVVTHDE 450
F+ + T ++ + + L +VL T + ++V H E
Sbjct: 366 ERFN--RLTDLVAKQAFEANQKDLHTTVSVLVENTSKRDNRVMVGHSE 411
>gi|427420460|ref|ZP_18910643.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
gi|425756337|gb|EKU97191.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
Length = 450
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 179/346 (51%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G T+N EAD+ L NTCT++ ++ + + + K
Sbjct: 7 HITTFGCQMNKADSERMAGILDDMGMNWTENPLEADVVLYNTCTIRDNAEQKVYSYLGKQ 66
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 67 AKRKQSDPNVTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLSDLLEQVFSGNQVVA 126
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T E++ +
Sbjct: 127 TEPVHI-MEDITKPRRDSKISAW-VNVIYGCNERCTYCVVPGVRGIEQSRTPEAIRAEME 184
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G EV L ++ AYGRD+ G L + + V ++P G +R +
Sbjct: 185 LLGQQGYTEVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYYVHDVP--GIERIRFATS 242
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + VL AM R YT +R ++DT+
Sbjct: 243 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTQEKYRRIIDTVRRY 299
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
VP I+ D I GFPGET+ F T+ L+++ F Q++ + + PRP
Sbjct: 300 VPDAAISADAIVGFPGETEGQFQNTLKLVEDIGFDQLNTAAYSPRP 345
>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
Length = 436
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 181/340 (53%), Gaps = 18/340 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +A QL GY T+N EEAD+ ++NTC V+ ++ + I +
Sbjct: 5 YIFTYGCQMNESDSERLAHQLETAGYTNTENFEEADLIILNTCCVRETAEHKIYGRIGEL 64
Query: 122 KSAK---KPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K L++A GC+ Q ++ K + IV G + + E+V E + H+ ++
Sbjct: 65 KHLKEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQI 124
Query: 174 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ +L F +PI GC CTYC H RG S +E++V V+
Sbjct: 125 NIEMDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKK 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L ++ +YG D G + L++A+ +P G +R MT+ P +
Sbjct: 185 LGQSGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRY-MTSHPQDMN 240
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
KE+ + L R V + LH+P+QSGS+ +L MNR YT+ ++ ++D E + G+ +
Sbjct: 241 --KEMIDALGRSTNVVTQLHLPIQSGSNRILQKMNRRYTVEHYKELIDYCREKIKGLTLT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGET+EDF T+ L+K ++ + F R G
Sbjct: 299 TDLIVGFPGETEEDFQATLQLLKNIRYDMAYTFIFSKRSG 338
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 167/334 (50%), Gaps = 14/334 (4%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL GY T+ E AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + +V E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVTL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K A +LP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 ADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ +H C + +H+PVQ GS+ +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKNGQHICEH--IHLPVQYGSNRILKAMNRVYTVEKYRERAQRVREALPNASLTTDLIVG 305
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
FPGETDEDF + + ++E ++ + + R G
Sbjct: 306 FPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSG 339
>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 182/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPYQADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKHEHPELTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGRQGFKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++DT+
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKQMSRGYTQEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDHLNTAAYSPRPG 348
>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
Length = 436
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 16/390 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSA 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INTC+V+
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 MDTLIAKCKSAKK---PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 167
+ + I + KK + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G V + + + NK+ + I+VGC CTYC RG S E +V
Sbjct: 119 GA-VEVSIDNDESTYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMIV 177
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 178 EQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLERIRFTSPHP 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP ++
Sbjct: 238 LHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNLR 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSN 407
I TDII FPGET EDF T++++++ KF Q+ ++ PRPG + LNL EL + S
Sbjct: 298 ITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGSQ 357
Query: 408 YKFTVMLISILVKLHYFSLDDQRNVLFGMT 437
LI L++LH L++ L G T
Sbjct: 358 -----RLID-LIELHKRYLEESMPKLIGET 381
>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
Length = 446
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 176/340 (51%), Gaps = 18/340 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L + T+ +AD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMDFQWTEEPNDADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 K--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K KP LVVAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ K + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIGK 190
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
G KE+ L ++ AYGRD+ + P L + + + +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYFT 250
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L + + L P V H+P QSG + +L AM R YT +R ++D + +P I+
Sbjct: 251 ERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHEKYRRIIDKIRHYMPDAAIS 308
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D I GFPGET+E FN T+ L+++ F ++ + + PRPG
Sbjct: 309 ADAIVGFPGETEEQFNNTLKLVEDIGFDLINTAAYSPRPG 348
>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
Length = 437
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 169/335 (50%), Gaps = 16/335 (4%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 129
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 189
Query: 236 DGVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G +EV L ++ +YG+D + LL +V E+ +G +R ++P I + L +
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKEADFADLLR-MVDEV--EGIRRVRFMTSHPKDISDKLID 246
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I
Sbjct: 247 TIKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIV 304
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGET+EDF Q + ++E ++ + + R G
Sbjct: 305 GFPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSG 339
>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
Length = 446
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|429767146|ref|ZP_19299359.1| tRNA methylthiotransferase YqeV [Clostridium celatum DSM 1785]
gi|429181578|gb|EKY22735.1| tRNA methylthiotransferase YqeV [Clostridium celatum DSM 1785]
Length = 434
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 175/341 (51%), Gaps = 15/341 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + D +E +D+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYESEAMAEKFIREGYEVVDFNEFSDVYVINTCTVTNMGDKKSRQIISRARRT 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 175
++A GC Q +++ E+ GV +V G + VV V E + H +L
Sbjct: 67 NPEAIIAAVGCYSQMAPKEVSEIPGVDVVLGTRNKGDVVYYVNKAKDEGQPQVHVQPVLQ 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L + + +K L I GC CTYC +ARG + S + ++ V+ + +
Sbjct: 127 NKKFEDLKIEDYQ-DKTRAFLKIQDGCNRFCTYCTIPYARGSVCSKDPDKVLSEVKELAS 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KEV LS T +YG D+ N+ ++ ++ E+ DG +RIG P F + E
Sbjct: 186 HGFKEVILSGIHTASYGLDLEGNVTLI--GLIEEIEKIDGIERIRIGSIEPAFFTPEVIE 243
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ + C + H+ +QSG DA L MNR YT ++ V+ L E +P + I+TD+I
Sbjct: 244 KIKGFKKLCPH--FHLSLQSGCDATLKRMNRRYTAEEYEASVNLLRETLPDVSISTDVIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
GFPGET E+FN+T +K+ + H+ ++ PR G + ++
Sbjct: 302 GFPGETKEEFNETYEYLKKIHLTKTHVFKYSPRKGTKAADM 342
>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 471
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 180/348 (51%), Gaps = 19/348 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+T ++ T+GC N DSE +AG L+A GY T N EEAD+ + NTC V+ ++S +
Sbjct: 35 NKTYHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGN 94
Query: 118 IAKCK--SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--T 165
I K KKP + V GC+PQ ++L V I G + + + +++ + T
Sbjct: 95 IGPLKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAIT 154
Query: 166 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
K + + + + +P RR + I GC C+YC + RG S E
Sbjct: 155 TKKTVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEE 214
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMT 283
++ ++ + A+GVKEV L ++ +YG+D+ +P LL + A +G +R +
Sbjct: 215 IIFEIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNA---IEGIERIRFVTS 271
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + L L C + +H+PVQSGS +L MNR YT D+ +V+ L E +
Sbjct: 272 HPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLKENI 329
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
P + I TDII GFPGET+EDF T++++++ +F + + R G +
Sbjct: 330 PDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTK 377
>gi|384428234|ref|YP_005637593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
gi|341937336|gb|AEL07475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
Length = 485
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 41/364 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE---ETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ GAYG D G +L +L+ I A++ D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
G +R ++P LE + + R P + ++LH+PVQ+GSD +LSAM R YT +F
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEF 325
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392
++ + L + PG+ I++D I GFPGETD DF++T+ LI++ F Q + RPG
Sbjct: 326 KSKIRKLRAVRPGISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPA 385
Query: 393 LNLD 396
+L+
Sbjct: 386 SDLE 389
>gi|182418337|ref|ZP_02949632.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237666343|ref|ZP_04526328.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377719|gb|EDT75263.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657542|gb|EEP55097.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 466
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 178/351 (50%), Gaps = 15/351 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + + T GC N ++E MA + GY +TD S AD++++NTC+V + S
Sbjct: 31 GKQYVAFSTLGCRVNHYETEAMAEKFIREGYEITDFSNFADVYVVNTCSVTNMSDKKSRQ 90
Query: 117 LIAKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
+I++ + + ++A GC Q S ++ ++EGV +V G + +V V + E +
Sbjct: 91 IISRARRINENAIIAAVGCYSQVSPEEVAKIEGVDVVLGTRNKGDIVYYVNKAKDEKESQ 150
Query: 173 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ L K+ L++ + + +K L I GC C YC + RG + S E ++
Sbjct: 151 IVVGEVLRNKEFEDLNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGAVCSKDPEKVI 209
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
++ + G KE+ LS T +YG D+ ++ ++ I+ E+ DG +RIG P
Sbjct: 210 SEIKKLAEHGFKEIILSGIHTASYGVDLEGDVSLM--TILEEIEKVDGIERVRIGSIEPC 267
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
F + + E + ++ C H+ +QSG DA L MNR YT ++ V + + +
Sbjct: 268 FFTDSVIEKMKSMKKLC--PQFHLSLQSGCDATLKRMNRRYTAKEYEEAVYKIRKNLKDA 325
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
I TD+I GFPGETDE+FN T +K K + HI +F PR G + +D+
Sbjct: 326 SITTDVIVGFPGETDEEFNLTYEYLKNLKLTKTHIFKFSPRKGTKAATMDN 376
>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
Length = 444
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 169/335 (50%), Gaps = 16/335 (4%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GYA T+ + ADI LINTC V+ ++ + I + K K
Sbjct: 17 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 76
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 175
+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 77 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 136
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 137 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 196
Query: 236 DGVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G +EV L ++ +YG+D + LL +V E+ +G +R ++P I + L +
Sbjct: 197 EGYREVTLLGQNVNSYGKDHKEADFADLLR-MVDEV--EGIRRVRFMTSHPKDISDKLID 253
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I
Sbjct: 254 TIKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIV 311
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGET+EDF Q + ++E ++ + + R G
Sbjct: 312 GFPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSG 346
>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
Length = 428
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 177/340 (52%), Gaps = 15/340 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKN 335
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L +E F + + PR G
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREG 408
>gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|444312757|ref|ZP_21148333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|443483945|gb|ELT46771.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
Length = 462
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 181/368 (49%), Gaps = 37/368 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ + +
Sbjct: 15 PNARKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 116 TLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 159
+ + + + K + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 160 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 268
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ +++ + E+ P M ++ D I GFPGETD+DF T+ L++E + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRP 364
Query: 389 GIQFLNLD 396
G +LD
Sbjct: 365 GTPGADLD 372
>gi|423395390|ref|ZP_17372591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|423406265|ref|ZP_17383414.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
gi|401654801|gb|EJS72340.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|401660259|gb|EJS77741.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
Length = 450
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
Length = 446
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|404482253|ref|ZP_11017480.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
bacterium OBRC5-5]
gi|404344414|gb|EJZ70771.1| ribosomal protein S12 methylthiotransferase RimO [Clostridiales
bacterium OBRC5-5]
Length = 440
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 179/341 (52%), Gaps = 21/341 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA-- 119
M + GC N DSE M G ++ G+ TD EEA+I +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEIMIINTCGFIQSAKEESINAILEAA 64
Query: 120 --KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEEGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPIDDLIAQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G+KE+ L +++T YG D+ +LP LL + +G +RI P I
Sbjct: 183 KDLAAQGIKELILVAQETTLYGVDLYGEKSLPKLLKELA---KVEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + V +L +P+Q SD +L M R + D ++ L + +PG+ +
Sbjct: 240 TDELIEV--IANEDKVCKYLDIPIQHASDNILRRMARRTSHDDLINIIGKLRKNIPGIAL 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T II GFPGET+ED ++ IK+ KF ++ + + G
Sbjct: 298 RTTIISGFPGETEEDLETVIDFIKKMKFERLGVFTYSEEEG 338
>gi|423615348|ref|ZP_17591182.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
gi|401261027|gb|EJR67194.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
Length = 450
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|365830337|ref|ZP_09371918.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
gi|365263441|gb|EHM93274.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
Length = 428
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 177/340 (52%), Gaps = 15/340 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKN 335
>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-23m63]
gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
Length = 432
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 35/377 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++A GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINKIEKIERIRLSSVEPILFTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDSTE 399
D+I GFPGET+E+F +T +KE + Q+HI ++ PR G Q + S +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 400 LLSLLFSNY-KFTVMLI 415
LL+L N+ KF I
Sbjct: 359 LLNLSKVNFNKFATKFI 375
>gi|374626085|ref|ZP_09698499.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
gi|373914611|gb|EHQ46426.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
Length = 428
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 177/340 (52%), Gaps = 15/340 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKN 335
>gi|294102364|ref|YP_003554222.1| MiaB family RNA modification protein [Aminobacterium colombiense
DSM 12261]
gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
DSM 12261]
Length = 440
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 177/341 (51%), Gaps = 21/341 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK-- 120
+K +GC N D + + L G+ T + EEADI + N C++++ ++ + + + +
Sbjct: 6 LKVYGCQMNVYDGDKLRTALIRNGWQET-SEEEADIVIFNGCSIRAKAEHKVWSELGRYG 64
Query: 121 --CKSAKKPLV-VAGCVPQ--GSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLL 174
KKP V V GC+ Q GS + V +VG + I + E +E + G V LL
Sbjct: 65 ESWSDKKKPFVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMAGERVSLL 124
Query: 175 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+DL P R N + + I GC CTYC + RG S E ++ +R
Sbjct: 125 DEDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSRFPEDILVEIR 184
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ DGVKE+ L ++ +YG+D G LL + A DG ++R ++P
Sbjct: 185 GLVEDGVKEITLLGQNVNSYGQDFKNGYTFSSLLRDVAA---IDGLPLIRFVTSHPK--- 238
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ +I EV+ HP + +++P+QSGSD +L MNR+YTL+ +R V + +P + +
Sbjct: 239 DFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNALPEVGL 298
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+EDF +V + E+++ VH + + PR G
Sbjct: 299 TSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREG 339
>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
Length = 452
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 179/345 (51%), Gaps = 22/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ + + AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 --KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFP ET+E F T+ L+ + F Q++ + + PRPG
Sbjct: 304 DASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPG 348
>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 437
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 181/345 (52%), Gaps = 19/345 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ I T GC NQSD+ M G+ + D E ADI LINTC V + QS +I
Sbjct: 2 KKIAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKII 61
Query: 119 AKC-KSAKKPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHE 170
+ + KPL VV GC PQ S D + ++GV I+G Q +VVE+V E L
Sbjct: 62 HRAARRDPKPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAP 121
Query: 171 VRLLHR----KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+ +H ++ LD RN+ L I GC C YC +ARGHL S ++++
Sbjct: 122 INAVHDLPVGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDN 179
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTN 284
+ V + A+ KE+ L G YG++I P L +A+ A L + LR+G
Sbjct: 180 IREEVAKLTAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLE 238
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ + L ++ + R P + + LH+P+Q+G D+ L+ M+R Y + F +++ + LVP
Sbjct: 239 SVEVEDALLDL--MAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIRSLVP 296
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ I TD+I GFPGET+EDF +++ I++ +F ++HI + R G
Sbjct: 297 NVAITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKG 341
>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
Length = 417
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 178/346 (51%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
E+ ++ +DTG YG D G L LL+ I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ETD D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 288 TETDRDHAQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
Length = 454
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 183/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E +G++V
Sbjct: 69 AKRKHEKADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ + +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRKYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPG
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPG 348
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK RR + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + E +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKEAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ET+E F +T++L +E +F + + PR G
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREG 419
>gi|425447602|ref|ZP_18827587.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
gi|389731777|emb|CCI04191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
Length = 446
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
Length = 446
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
Length = 453
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 184/346 (53%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 8 HIITFGCQMNKADSERMAGILEDMGFEWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 67
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G+ L+ + + +V G Q +R+ +++E G++V
Sbjct: 68 AKRKQEEPDLTLIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ V + I GC CTYC + RG S T E++ +
Sbjct: 128 TEEVHIFE-DITQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQ 186
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R ++
Sbjct: 187 LARQGYKEITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSH 244
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K A++ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 245 PRYFTERLIKACADL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRGYM 301
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ F V+ + + PRPG
Sbjct: 302 PDASISADAIVGFPGETETQFENTLKLVEDIGFDLVNTAAYSPRPG 347
>gi|126700065|ref|YP_001088962.1| MiaB-like tRNA modifying enzyme [Clostridium difficile 630]
gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-66c26]
gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
107932]
gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-63q42]
gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
ATCC 43255]
gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-76w55]
gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-97b34]
gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-37x79]
gi|260684029|ref|YP_003215314.1| radical SAM protein [Clostridium difficile CD196]
gi|260687689|ref|YP_003218823.1| radical SAM protein [Clostridium difficile R20291]
gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-32g58]
gi|384361672|ref|YP_006199524.1| radical SAM protein [Clostridium difficile BI1]
gi|423092477|ref|ZP_17080281.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile
630]
gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
CD196]
gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
R20291]
gi|357553979|gb|EHJ35715.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
Length = 432
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 35/377 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++A GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDSTE 399
D+I GFPGET+E+F +T +KE + Q+HI ++ PR G Q + S +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 400 LLSLLFSNY-KFTVMLI 415
LL+L N+ KF I
Sbjct: 359 LLNLSKVNFNKFATKFI 375
>gi|325295239|ref|YP_004281753.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 437
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 182/344 (52%), Gaps = 28/344 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y+KTFGC N +DSE MAG L + GY TD EEAD+ ++NTC+V++ + + I
Sbjct: 4 FYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFIGN 63
Query: 121 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K KK + V GCVPQ ++ + + V +V G ++ E+++ K V +
Sbjct: 64 LKKIKKEKPETIIAVGGCVPQKEKESILRFKHVDLVFGTFNFMKIGELIKRAKKERVVEI 123
Query: 174 LHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
L+ K K+P +D N +V + + GC C+YC RG S E ++
Sbjct: 124 LNSKIPEEDKVPLID--SYLENPYVAYVTVQRGCNRFCSYCIVPFTRGRERSVKPELVLK 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
V+ + GVKEV L ++ Y + G++L LL +V+E+ +G +R ++P
Sbjct: 182 EVKRLAERGVKEVHLLGQNVDFYNYE-GIDLADLL-YMVSEV--EGIERIRFTTSHPCGF 237
Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
I+E +K I +V C Y +H+P QSGS +L MNR YT ++ V L E +P
Sbjct: 238 NRKIVEAMKNIEKV----CPY--VHLPPQSGSTKILERMNRGYTREEYTEKVMMLKEEIP 291
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ ++ D I GFPGET +DF +T++L++ F Q + ++ PRP
Sbjct: 292 KVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRP 335
>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
Length = 437
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 181/351 (51%), Gaps = 20/351 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMD 345
>gi|345005921|ref|YP_004808774.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
gi|344321547|gb|AEN06401.1| MiaB-like tRNA modifying enzyme [halophilic archaeon DL31]
Length = 416
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 180/354 (50%), Gaps = 42/354 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + L G+ D + AD+ ++N+CTV ++ M +
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVDGPKAADVAILNSCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L+V GC+ ++ Q+ D G + ++LH ++P
Sbjct: 65 AEETADLIVTGCM-------------ALAQGQEFDEA---------GLDAQVLHWDEVPE 102
Query: 182 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
P V + + ILPI GC+ C+YC TK A G + S ++E V + R
Sbjct: 103 AVTNGECPTPGPGVEPVLDGVIGILPIARGCMSNCSYCITKQATGRIDSPSIEENVEKAR 162
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G KE+ ++ +DTG YG D G +LP LL+ I +G +R+GM NP I
Sbjct: 163 ALVHAGAKELRVTGQDTGVYGWDDGERDLPELLDRICN---IEGEFRVRLGMANPGGIHG 219
Query: 291 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+E+A+V R+ +Y+F+H PVQSGS+ VL M R++ + F +++T + ++
Sbjct: 220 IREELADVFARNEKLYTFIHAPVQSGSNEVLEEMRRQHRVDKFLEIIETFDTKLDHWTLS 279
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
TD I GFP ETD D Q++ L +E + +V+I++F RPG D+ E+ L
Sbjct: 280 TDFIVGFPTETDADHEQSMALFRETRPEKVNITRFSKRPGT-----DAAEMKGL 328
>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
Length = 437
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 181/351 (51%), Gaps = 20/351 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMD 345
>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
Length = 446
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|359411010|ref|ZP_09203475.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
gi|357169894|gb|EHI98068.1| MiaB-like tRNA modifying enzyme [Clostridium sp. DL-VIII]
Length = 459
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 175/343 (51%), Gaps = 15/343 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N ++E MA + GY +T AD+++INTC+V + S +I++ +
Sbjct: 32 TLGCRVNHYETEAMAEKFIREGYEITQFENFADVYVINTCSVTNMSDKKSRQIISRARRR 91
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-----LH 175
K ++A GC Q + D + ++EGV +V G + +V V + H+ +L L
Sbjct: 92 NKEAIIAAVGCYSQVAPDEVSKIEGVDVVLGTRNKGDIVYYVNKAKDEHKPQLMVGEVLK 151
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC C YC + RG S + ++ ++ +
Sbjct: 152 NKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPDKVLTEIKKLNE 210
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS T +YG D+ N+ ++ ++ E+ DG +RIG P F + + E
Sbjct: 211 HGFKEIILSGIHTASYGVDLDGNVSLI--TLLEEIEKLDGIERVRIGSIEPSFFTDEVIE 268
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C H+ +QSG DA L MNR YT ++ V+ + E + I TD+I
Sbjct: 269 KIKNMKKLC--PQFHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDASITTDVIV 326
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
GFPGETDE+FN+T +K K + HI +F PR G + ++ +
Sbjct: 327 GFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTKAADMSN 369
>gi|166367538|ref|YP_001659811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Microcystis
aeruginosa NIES-843]
gi|425440422|ref|ZP_18820724.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|425463534|ref|ZP_18842864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
gi|229890619|sp|B0JVM6.1|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
gi|389719125|emb|CCH96984.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|389831547|emb|CCI25631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
Length = 446
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|404370256|ref|ZP_10975579.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
gi|226913622|gb|EEH98823.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
Length = 434
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 177/350 (50%), Gaps = 25/350 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ T GC N +SE MA + GY + D SE AD+++INTCTV + +I++
Sbjct: 3 VAFSTLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISR 62
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEV 171
+ + VA GC Q +++ E+ GV +V G + VV V E + H
Sbjct: 63 ARRLNENATVAVVGCYSQIAPKEVSEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQVHVE 122
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+L KK L++ + + +K L I GC CTYC ++RG + S + ++ V
Sbjct: 123 GVLKNKKFEELNIEEYQ-DKTRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPKKVLEEVN 181
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 287
+ G KE+ LS T +YG D+ VNL ++ I +G +RIG P F
Sbjct: 182 KLAEHGFKEIILSGIHTASYGLDLEGSVNLIDIIEEI---EKVEGIERIRIGSIEPAFFT 238
Query: 288 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
++E +K+ ++ H H+ +QSG DA L MNR YT ++ V+ L E +P
Sbjct: 239 PEVIEKIKKFKKLCPH------FHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMPD 292
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+ I TD+I GFPGET+E+FN+T +K K + H+ ++ PR G + ++
Sbjct: 293 VSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADM 342
>gi|373469230|ref|ZP_09560438.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371764909|gb|EHO53275.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 440
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 178/336 (52%), Gaps = 21/336 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEA++ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAILEAA 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
+ + K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEDGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY +E L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLEDLIIQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + + G+KE+ L +++T YG D+ LP LL + DG +RI P I
Sbjct: 183 KDLASQGIKELILVAQETTLYGVDLYGKKTLPKLLKELA---KIDGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ + + V +L +P+Q SD +L M R T D ++ L + +P + +
Sbjct: 240 TDELIDV--IAKEDKVCKYLDIPIQHASDNILRRMARRTTHDDLVNIIGKLRKNIPDITL 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
T II GFPGET+ED N V+ IK+ KF ++ + +
Sbjct: 298 RTTIIAGFPGETEEDVNTVVDFIKQMKFERLGVFTY 333
>gi|421860660|ref|ZP_16292766.1| 2-methylthioadenine synthetase [Paenibacillus popilliae ATCC 14706]
gi|410829846|dbj|GAC43203.1| 2-methylthioadenine synthetase [Paenibacillus popilliae ATCC 14706]
Length = 442
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 185/350 (52%), Gaps = 29/350 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
TE I + T GC N DSE M+G + +G+ L +N+E+A + ++NTC + + + +++T
Sbjct: 2 TEQIKIVTLGCDKNLVDSEMMSGIMDQYGHELVENAEDATVIIVNTCGFIDAAKEESVNT 61
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K + K L+V+GC+ Q ++ + E++G IVG ++ E+V E L+
Sbjct: 62 ILELADLKETARLKALIVSGCLTQRYKEQLLEEMPEIDG--IVGTGDFHKINEIVAEALQ 119
Query: 168 GHE-VRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + VR+ + + LP KV ++ + I GC CT+C RG S
Sbjct: 120 GKKPVRVGNPVFNYEQILPR----KVATPRYTAYVKIAEGCDNNCTFCSIPMMRGKFRSR 175
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
++ES++ V+ + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 176 SMESILTEVKQLAEQGVKEISLIAQDSTNYGIDLYDGFKLPALMNK-VSEVP--GVEWVR 232
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ P F E L I + +P + ++ +P+Q D +L M R D R +V +
Sbjct: 233 LHYAYPGFFTEEL--IDTIATNPKICKYVDMPLQHSEDTILKRMRRPGRQCDSRELVRKI 290
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + + T II GFPGETDEDF + ++E KF ++ + + P G
Sbjct: 291 RAGIPEVALRTSIIVGFPGETDEDFENLASFVREMKFDRLGVFSYSPEEG 340
>gi|302874325|ref|YP_003842958.1| MiaB family RNA modification protein [Clostridium cellulovorans
743B]
gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
cellulovorans 743B]
gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
743B]
Length = 433
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 167/340 (49%), Gaps = 13/340 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE M + + GY + D E+A++++INTCTV + I+K K
Sbjct: 7 TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAKKK 66
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
VVA GC Q S D + +EGV +V G + +V V + E +L
Sbjct: 67 NPEAVVAVVGCYSQTSPDEVSAIEGVDVVLGTRNKGDIVYYVNRAMDTKEKFVVVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K L + K L + GC C+YC +ARG + S E+++ V +
Sbjct: 127 NKVFEELKIEDFE-GKTRAFLKVQDGCNRFCSYCLIPYARGAVCSKNPETIIDEVNKLAD 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G KE+ LS +YG D+ L++ I +G +RIG P F + + E
Sbjct: 186 NGFKEIILSGIHIASYGVDLE-ERKTLMDIIEEIHKINGIKRIRIGSVEPRFFTDEVIEK 244
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
+ C + H+ +QSG DA L MNR+YT ++ V L E +P + I TD+I G
Sbjct: 245 MASMEKMCPH--FHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRERIPNVSITTDVIVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
FPGET E+FN+T N +KE + ++HI ++ PR G + ++
Sbjct: 303 FPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADM 342
>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
Length = 509
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 178/345 (51%), Gaps = 23/345 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKTLKKENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVRR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRRGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+HL E+ +L H +H+PVQSGS VL M R+Y + + +V + +P
Sbjct: 307 DDHLVEVLGKGGNLLDH------IHLPVQSGSSEVLKLMARKYDRARYMELVGKIKAAMP 360
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 361 NASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
Length = 457
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 179/342 (52%), Gaps = 22/342 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ ++ EAD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEEMGFRWAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHEQPDLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR+ V + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGR 190
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L + + L P V H+P QSG + VL AM R YT +R+++ + + +P
Sbjct: 249 FTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTQEKYRSIIAKIRQYMPDAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L++E F Q++ + + PRPG
Sbjct: 307 ISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPG 348
>gi|402312007|ref|ZP_10830937.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium ICM7]
gi|400370668|gb|EJP23650.1| ribosomal protein S12 methylthiotransferase RimO [Lachnospiraceae
bacterium ICM7]
Length = 440
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 175/339 (51%), Gaps = 17/339 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIA-- 119
M + GC N DSE M G ++ G+ TD EEA+I +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNDKGFEYTDIDEEAEIMIINTCGFIQSAKEESINAILEAA 64
Query: 120 --KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEEGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
L +LP++ + + L I GC CTYC RG+ SY ++ L+ + +
Sbjct: 125 LDLDRLPSISNKRTNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPMDDLIAQAKD 184
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ A G+KE+ L +++T YG D+ +LP LL + +G +RI P I +
Sbjct: 185 LAAQGIKELILVAQETTLYGVDLYGEKSLPKLLKELA---KVEGIEWIRILYCYPEEITD 241
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L E+ C Y L +P+Q SD +L M R T D ++ L + +PG+ + T
Sbjct: 242 ELIEVIANEEKVCKY--LDIPIQHASDNILRRMARRTTHDDLVNIIGKLRKNIPGITLRT 299
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGET+ED ++ IK KF ++ + + G
Sbjct: 300 TIISGFPGETEEDLETVIDFIKNMKFERLGVFTYSEEEG 338
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS AVL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAVLKLMARKYDRERYLELVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREG 404
>gi|373469162|ref|ZP_09560371.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
gi|371765044|gb|EHO53408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
Length = 475
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 178/339 (52%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G LS GY +N E+AD+ L NTCTV+ + + + + K
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYLEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKN 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q + ++++++ V +V G I ++ E++ + LK + V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLKTKKQVVD 160
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + LP R+ F + I GC C+YC + RG S E ++ ++
Sbjct: 161 VMESADMIVEKLPNKRQFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKG 220
Query: 233 VIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ADGVKEV L ++ +YG+ D N +LL+ + +G LR +P + +
Sbjct: 221 LVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVSK---IEGLERLRFMTPHPKDLSD 277
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + C + LH+P+QSGS ++L MNR YT + +V + +P + + T
Sbjct: 278 EVIEVMKKNKKICKH--LHLPLQSGSSSILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGE++EDF T++++KE ++ + R G
Sbjct: 336 DIIVGFPGESEEDFLDTLDVVKEVRYDSAFTFIYSKRSG 374
>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 179/349 (51%), Gaps = 28/349 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T + T GC NQ +SE M+ GY DN E +D++++NTCTV + S I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFEKRGYKEVDNDEFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 119 AKCKSAKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K K K P +VV GC Q S ++K +EGV +V G + +++V+++EE H
Sbjct: 63 RKSKK-KNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH---- 117
Query: 174 LHRKKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
KK+ + DL VR N+ + + GC CTYC ARG + S
Sbjct: 118 ---KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRE 174
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++ V R + +G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 175 IDDAVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSS 232
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
P I + E + L+ + H+ +QSGS+ +L AMNR YT ++ + + +
Sbjct: 233 VEPIIITDEFMERS--LKTEKLCDHFHLSLQSGSNNILKAMNRRYTREEYIEKANIIRKY 290
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+P + TDII GFPGE++EDF +++++++ F ++H+ ++ R +
Sbjct: 291 MPYAGLTTDIIVGFPGESEEDFEDSMSIVRKVGFSRIHVFKYSKRKNTK 339
>gi|425459253|ref|ZP_18838739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
gi|389823075|emb|CCI29007.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
Length = 446
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 173
K+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPG
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPG 348
>gi|147677673|ref|YP_001211888.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelotomaculum
thermopropionicum SI]
gi|229890589|sp|A5D2K1.1|MIAB_PELTS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|146273770|dbj|BAF59519.1| 2-methylthioadenine synthetase [Pelotomaculum thermopropionicum SI]
Length = 448
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 178/343 (51%), Gaps = 28/343 (8%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
FGC N+ DSE +AG L + GY NSE+ DI LINTC V+ +++ + +L+ + + K
Sbjct: 9 FGCQMNEHDSEVLAGILESMGYCQAGNSEDPDIILINTCCVRKTAENKVFSLLGRLRRQK 68
Query: 126 KP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEVRLLH 175
+ V GC+PQ + ++ + I G + ++ E++ + ++G + L
Sbjct: 69 AQNPNLIIGVCGCMPQQEGMAERIKQLFPHVDLIFGTHNVHQLPELIGKVIEGQKQVL-- 126
Query: 176 RKKLPAL------DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ P +LP R+ + I GC CTYC + RG S + E++
Sbjct: 127 -EIWPGYGGELREELPVKRKEGVRAWVTIMYGCNNFCTYCIVPYVRGREKSRSPEAVYEE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNP-P 286
V + +G KEV L ++ +YG+D+GV + LL ++ DG +R ++P
Sbjct: 186 VARLAGEGFKEVILLGQNVNSYGKDLGVKTDFASLLESLEN---IDGIDRIRYMTSHPRD 242
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
F L ++ IA + V H+PVQ+GS+ +L MNR YT ++ ++ + L+P
Sbjct: 243 FSLRLVEAIAASKK---VCEHFHLPVQAGSNRILKKMNRGYTREEYVDLIRYIKSLIPHA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDI+ GFPGETDEDFN T++L++E +F + + RPG
Sbjct: 300 TVTTDIMVGFPGETDEDFNDTLDLVREIRFDSAYTFVYNIRPG 342
>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
Length = 417
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 173/338 (51%), Gaps = 21/338 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRADEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + + +L +G +R+GM NP + +E+A V
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDHLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D Q++ L++E + +V++++F RPG +
Sbjct: 288 TETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEM 325
>gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
Length = 467
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
Length = 417
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 173/335 (51%), Gaps = 15/335 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
L + GC+ L + E + V + V E + E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDGQVLHWDAVPEAVTNGECPTTTPDAEPI 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-R 300
++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+
Sbjct: 173 RITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADAFAE 230
Query: 301 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 360
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP ET
Sbjct: 231 YDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFGEALEYWTLSTDFIVGFPTET 290
Query: 361 DEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
D D Q++ L++E + ++++++F RPG ++
Sbjct: 291 DHDHEQSMALLRETRPEKINVTRFSKRPGTDAADM 325
>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
Length = 459
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 180/345 (52%), Gaps = 19/345 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS----AM 114
+T +KTFGC N DSE +AG L G EEADI + TC+V+ + + A+
Sbjct: 14 KTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCSVREKADTHLYGAV 73
Query: 115 DTLIA--KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-- 167
L+ K+ + V GC+ Q G+R K + V +V G + V E++ E +
Sbjct: 74 SNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASVPELLCEAFESD 133
Query: 168 GHEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
G EV + + + + + +LP R F +PI GC CT+C RG S E
Sbjct: 134 GSEVFVDTVEKNRGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVPLVRGRERSRVFER 193
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+V V ++ DGV+EV L ++ +YGRD+ P + ++ E+ G +R +NP
Sbjct: 194 VVAEVARLVDDGVREVTLLGQNVNSYGRDL-YGKP-RFSELLREVGKTGIERIRFTSSNP 251
Query: 286 PFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+ + ++ +AE P V LH+ VQSGS+ +L AM+R Y + +V+ L E +P
Sbjct: 252 KDLSHDTIRAMAET---PNVMPQLHLAVQSGSNRILRAMHRAYNREKYLSVIAELKEAIP 308
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+ ++TDII GFPGET+EDF QT++L+ E + + + RPG
Sbjct: 309 GIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPG 353
>gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13]
gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13]
gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
Length = 467
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRCEETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
Length = 417
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 178/355 (50%), Gaps = 44/355 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D EEAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG E E + G R+LH ++
Sbjct: 65 SDETADLYITGCMALAQGE---------------------EFAEADVDG---RVLHWDEV 100
Query: 180 PAL--------DLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P P V + V ILPI GC+ C+YC TK A G + S ++E V +
Sbjct: 101 PEAVTNGECPTTTPDVEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEK 160
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
R ++ G KE+ ++ +DTG YG D G L + E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKEIRITGQDTGVYGWDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVH 218
Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+E+A V + +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + +
Sbjct: 219 GIREELAAVFADNEELYDFLHAPVQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTL 278
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
+TD I GFP ET++D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 279 STDFIVGFPTETEDDHRQSLELLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 174/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 419
>gi|452974392|gb|EME74212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
sonorensis L12]
Length = 509
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NTC ++ +++ + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKMNNPDVILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRHGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELHKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYLELVGKIKKAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ET+E F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
gi|167705625|gb|EDS20204.1| tRNA methylthiotransferase YqeV [Clostridium ramosum DSM 1402]
Length = 428
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 176/340 (51%), Gaps = 15/340 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC N +S M + GY D + AD+++INTCTV + S +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 119 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 171
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLGTGEMVIK 121
Query: 172 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKN 335
>gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
Length = 467
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMRLVREVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
Length = 450
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 181/341 (53%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E++PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|414160614|ref|ZP_11416880.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
gi|410878134|gb|EKS26023.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
Length = 513
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 177/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KT+GC N D+E MAG A GY L D+ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTYGCQMNAHDTEVMAGIFEALGYTLADDMLKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHKLPEILEEAYLSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S E ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G KE+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 EEVRDLARQGYKEITLLGQNVNSYGKDLQ-DIEYGLGDLFEDIAKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+H+ E+ + + + +H+PVQSG+DAVL M R+YT + +V+ + +P +
Sbjct: 307 FTDHMIEV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKAAIPDVA 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 365 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDG 406
>gi|297617812|ref|YP_003702971.1| MiaB-like tRNA modifying protein [Syntrophothermus lipocalidus DSM
12680]
gi|297145649|gb|ADI02406.1| MiaB-like tRNA modifying enzyme [Syntrophothermus lipocalidus DSM
12680]
Length = 444
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 181/352 (51%), Gaps = 19/352 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
I T+Y T GC NQ +SE + Q S +GY + E AD++++NTC V S+
Sbjct: 3 IKARVTVY--TLGCKVNQVESENIKQQFSDYGYQILSGDEVADVYVVNTCAVTHVSERKS 60
Query: 115 DTLI--AKCKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVE----ETL 166
++ AK K+ K +V GC+ Q + +L E ++G DR+ E+V+ ++
Sbjct: 61 RAMLRRAKRKNPKAVVVATGCLAQVAPNLLAAMPEVDLVIGNSSKDRIAELVQNHRGQSS 120
Query: 167 KGHEVRLLHRKKLP--ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
K V L ++ L A LP R + + I GC C+YC +ARG + S E
Sbjct: 121 KAVVVGELSKEPLRRGAWCLPAYERTR--AFVKIQDGCESYCSYCLVPYARGPVRSKLPE 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMT 283
+V + +++ G KE+ ++ TG YG+D+ +L LL ++ ++ G LR+
Sbjct: 179 DVVREIDWLVSAGFKEIVITGIHTGMYGKDLADWDLVRLLETVLVKV--QGDYRLRLSSI 236
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P I + L E+ + C + LH+P+QSGSD VL MNR YT +R +V + V
Sbjct: 237 EPTEITKKLIELMASEKKLCRH--LHIPLQSGSDRVLKLMNRRYTRGFYRDLVMMVTGRV 294
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
PG + +D++ GFP E++EDF T+ LI E F +H+ + PRP +L
Sbjct: 295 PGTAVTSDVMVGFPTESEEDFLDTLKLIDELPFAGLHVFPYSPRPNTAATDL 346
>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
Length = 450
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 183/348 (52%), Gaps = 17/348 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL LL + AE+ +G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKNYNLAGLLRDMEAEV--NGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G +D
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMD 344
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 181/347 (52%), Gaps = 15/347 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFP ETDE F +T++L +E +F + + PR G N+
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAANM 410
>gi|167771421|ref|ZP_02443474.1| hypothetical protein ANACOL_02787 [Anaerotruncus colihominis DSM
17241]
gi|167666061|gb|EDS10191.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaerotruncus colihominis
DSM 17241]
Length = 457
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 173/350 (49%), Gaps = 21/350 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ +FGC NQSD E +AG L+ GY TD E+AD+ + NTC V+ ++ + +
Sbjct: 22 YVHSFGCQQNQSDGEKIAGMLAQMGYGFTDAPEQADLVIYNTCAVRENAEDRVFGNVGAL 81
Query: 122 KSAKKP-----LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
KSAKK + + GC+ Q + K V +V G + + E++ L G
Sbjct: 82 KSAKKRRAGMLIGLCGCMMQQQAVADKIKKSYPYVDLVFGTHALHTLPELLYRRLLGENR 141
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P R LP+ GC CTYC + RG S ++
Sbjct: 142 QFSTENARGEIIEGVPLRRSGSIKANLPVMYGCDNFCTYCIVPYVRGRERSRNPGDVLNE 201
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI---VAELPPDGSTMLRIGMTNPP 286
R ++ G +E+ L ++ +YG+ G++ PI A+ V E+ D +R ++P
Sbjct: 202 ARALVGQGYRELLLLGQNVNSYGK--GLSEPINFAALLRRVNEIEDD--FWIRFMTSHPK 257
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
L + C + +H+PVQSGSD +L+AMNR YT++ + ++D +PG+
Sbjct: 258 DCTHELIDTIAACNKVCRH--IHLPVQSGSDRILAAMNRHYTVAHYLELIDYARARIPGV 315
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
++DII GFPGET DF QT+ LIK +F ++ + PRPG + ++
Sbjct: 316 TFSSDIIVGFPGETRADFEQTLELIKRVRFNALYTFIYSPRPGTKAAGME 365
>gi|157364247|ref|YP_001471014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
lettingae TMO]
gi|229891012|sp|A8F716.1|MIAB_THELT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157314851|gb|ABV33950.1| RNA modification enzyme, MiaB family [Thermotoga lettingae TMO]
Length = 436
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 182/348 (52%), Gaps = 34/348 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ----SAMDT 116
++ KT+GC N +D+E MAG LS GY + + EEADI ++NTC V+ SQ SA+
Sbjct: 3 VFFKTYGCQMNLNDTETMAGILSQHGYEVVNLPEEADIVILNTCVVRQKSQEKYHSALGQ 62
Query: 117 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEETLK 167
+ KS K L+ +AGC GS LEG ++G + I ++ EV+++ +
Sbjct: 63 FVKLKKSGKIKLIGIAGC---GS----NLEGEELIKSGADFVIGSRSIGKIAEVLQKAAR 115
Query: 168 GHEVRLLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
G ++ L + +D P++R +K + I GC CTYC + RG S +
Sbjct: 116 GEKIVYLE-DDICTVDSKTPRMRFSKHHAWITIIHGCNRFCTYCIVPYTRGREKSRPLPD 174
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM- 282
++ V + +GVKE+ ++ AYG+D+ G NL L+ E + RI
Sbjct: 175 VLLEVEKLAKNGVKEITFLGQNVDAYGKDLKDGTNLASLI-----EQAGKFEQIKRIWFL 229
Query: 283 -TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
+ P I + L I V P H+PVQSGS+ +L MNR Y F +V+ +
Sbjct: 230 TSYPTDITDKL--IETVAEDPKAAKSFHIPVQSGSNRILRLMNRRYDRDQFLQLVEKIRS 287
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I++DII GFP ET+ D+ QT++L+++ +F +++++ + PR G
Sbjct: 288 KIPHASISSDIIVGFPTETEYDYMQTMDLVRKARFERLNLAVYSPRQG 335
>gi|375101866|ref|ZP_09748129.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora cyanea NA-134]
gi|374662598|gb|EHR62476.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora cyanea NA-134]
Length = 498
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 175/347 (50%), Gaps = 23/347 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GYAL + E+ D+ ++NTC V+ + + +
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK KP + V GC+ Q R +K V +V G I + ++E
Sbjct: 62 LGHLRAAKTSKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 170 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILESLETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 285
V ++A+GV EV L ++ +YG + G +A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236
Query: 286 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D +
Sbjct: 237 HPAAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVRAA 293
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I TDII GFPGET+EDF QT+ ++++ +F Q+ RPG
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLQVVRQARFSSAFTFQYSQRPG 340
>gi|443311749|ref|ZP_21041373.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechocystis sp. PCC 7509]
gi|442778149|gb|ELR88418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechocystis sp. PCC 7509]
Length = 456
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 177/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG + G+ +++ AD+ + NTCT++ ++ + + + K
Sbjct: 11 HITTFGCQMNKADSERMAGIIENMGFEWSEDPNNADLIVYNTCTIRDSAEQKVYSYLGKQ 70
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LV+AGC+ Q G L+ + + +V G Q +R+ +++++ G++V
Sbjct: 71 AKRKHREPHLTLVIAGCLAQQEGEALLRRVPELDLVMGPQHANRLEDLLQQVYNGNQVVA 130
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ A D+ RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 131 TESAHI-AEDITTPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRAEIE 188
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ P L + ++P G LR +
Sbjct: 189 RLAKMGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYFIHDVP--GIERLRFATS 246
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L M+R YT +R ++DT+
Sbjct: 247 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKLMSRGYTHQKYRRIIDTIRRY 303
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
VP I+ D I FPGET+E FN T+ L+ + F + + + PRPG
Sbjct: 304 VPDATISGDAIAAFPGETEEQFNNTLKLMTDIVFDHTNTAAYSPRPG 350
>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
GD/7]
Length = 454
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 179/340 (52%), Gaps = 12/340 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLI 118
TI+ + GC N DSE M G L A G+ L D+ EADI ++NTC+ + + ++ T++
Sbjct: 10 TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69
Query: 119 A----KCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 171
K K L+V GC+ + +D + E+E V +++G + EVV E L+G +V
Sbjct: 70 EMAEMKHSCRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKV 129
Query: 172 RLLHR-KKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P +D+ ++ + L I GC CTYC RG S++++ L+ +
Sbjct: 130 KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQ 189
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ A GVKE+ + +++T YG D+ +L + +G + +R+ P I
Sbjct: 190 AESLAAQGVKELNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEIN 249
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L ++ + P + +L +P+Q GSDAVL M R T ++ R+++ L E +P + +
Sbjct: 250 EELIQV--IKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREEIPDIALR 307
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T +I GFPGET+ D + + +K+ +F ++ + + G
Sbjct: 308 TTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEG 347
>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 432
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 176/345 (51%), Gaps = 27/345 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+ + T GC NQ ++E M G GY + E+AD ++INTC+V S +I +
Sbjct: 4 VALTTLGCKVNQFETETMEGLFKKSGYDIVPFEEKADFYVINTCSVTSLGDRKSRQIIRR 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------G 168
+ + ++A GC Q ++K +EGV +V G ++ R+VE VE+ + G
Sbjct: 64 AQRTNENAIIAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVG 123
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + + +P D+P+ R L I GC C+YC +ARG + S ++ +
Sbjct: 124 NIMEAHEFEDIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHS 179
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 285
+ ++ G KE+ L+ GAYG+D+ + L +A L +G LR+G
Sbjct: 180 EAKKLVDAGFKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIEL 238
Query: 286 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + ++E H LH+P+Q+GSDAVL MNR Y ++F +++ + VP
Sbjct: 239 SPDLFALIREDDRFCAH------LHLPLQAGSDAVLKDMNRHYDTAEFGRLIEQVEREVP 292
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+ ++TDII GFPGET+E F ++ +++ F ++H+ + R G
Sbjct: 293 GVAVSTDIIVGFPGETEEQFTDSLKFVEKMNFSRMHVFPYSKRSG 337
>gi|399577306|ref|ZP_10771059.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
gi|399237689|gb|EJN58620.1| miab-like tRNA modifying enzyme [Halogranum salarium B-1]
Length = 416
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 174/336 (51%), Gaps = 17/336 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S ++ L G+ +AD+ ++NTCTV ++ M T +
Sbjct: 5 HIETYGCTSNRGESRHIEQALRDGGHHPASGPGDADVAILNTCTVVEKTERNMLTRAKEL 64
Query: 122 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 181
+ L++ GC+ L + E GV + V + E + P
Sbjct: 65 EEETADLIITGCMA-----LAQGEEFREAGVDADVLHWDDVPQAAMNGECPTVTPDTEPV 119
Query: 182 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 241
LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G KE+
Sbjct: 120 LD-------GTVGILPIARGCMSNCSYCITKFATGRIDSPSVEENVRKARALVHAGAKEL 172
Query: 242 WLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 300
++ +DTG YG D G LP LL+ I +G +R+GM NP I +E+ EV
Sbjct: 173 RITGQDTGVYGWDKGDRKLPELLDRIC---DIEGDFRVRVGMANPGGIHGIQEELVEVFA 229
Query: 301 -HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 359
+ +Y+F+H+PVQSGSD VL M R++ + F +V+ + + ++TD I GFP E
Sbjct: 230 ANEKLYNFIHLPVQSGSDDVLEDMRRQHRVDKFLDIVEVFDDRLDYWTLSTDFIVGFPTE 289
Query: 360 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDED ++ L+KE + ++++++F RPG ++
Sbjct: 290 TDEDHAMSMALMKEVRPEKINVTRFSKRPGTDAADM 325
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 174/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 139 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 198
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 199 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 258
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 259 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 318
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 319 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 377
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 378 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 435
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 436 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 476
>gi|70726621|ref|YP_253535.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
haemolyticus JCSC1435]
gi|123734986|sp|Q4L5Z6.1|MIAB_STAHJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|68447345|dbj|BAE04929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 514
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 177/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A GY T++ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALGYTATEDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPEALIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDIIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + DG KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRGLARDGYKEITLLGQNVNSYGKDIK-DLEYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+YT + +V+ + + +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKKSIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDG 407
>gi|257056745|ref|YP_003134577.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Saccharomonospora viridis DSM 43017]
gi|256586617|gb|ACU97750.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Saccharomonospora viridis
DSM 43017]
Length = 494
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 173/345 (50%), Gaps = 19/345 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T T ++TFGC N DSE +AGQL GY+L E+AD+ ++NTC V+ + + +
Sbjct: 2 TRTYTIRTFGCQMNVHDSERLAGQLEEAGYSLAAEGEQADVVVLNTCAVRENADNKLYGH 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ ++AK + V GC+ Q R ++ V +V G + + ++E
Sbjct: 62 LGHLRAAKAANPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNLGSLPVLLERARHNA 121
Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
E ++ + L LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEIVEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 285
V ++A+GV EV L ++ +YG + G LL + + DG +R +P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRSCGS---IDGLERVRFTSPHP 238
Query: 286 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D + +P
Sbjct: 239 AAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSARFLSILDKVRAAMP 295
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I TDII GFPGET+EDF QT+ ++++ +F Q+ PRPG
Sbjct: 296 DAAITTDIIVGFPGETEEDFQQTLEVVRQARFSSAFTFQYSPRPG 340
>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisB18]
gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisB18]
Length = 473
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 182/359 (50%), Gaps = 25/359 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++K+FGC N D++ M L+ G+ T N++EAD+ ++NTC ++ + + + + +
Sbjct: 7 LHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSELGR 66
Query: 121 CKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ AK + VAGCV Q G+ ++ V +V G Q + +++ E +G
Sbjct: 67 LRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARG 126
Query: 169 H---EVRLLHRKKLPALDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E K L P+ +R + + GC CT+C + RG S
Sbjct: 127 GRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRP 186
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLR 279
V+ +V VR + +GV+E+ L ++ AY D P L A++ A++P G LR
Sbjct: 187 VDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLR 244
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P + + L + L P + F+H+PVQSGSDA+L+AMNR+++ D+R +VD
Sbjct: 245 YSTSHPRDVDQSLIDAHRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRF 302
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDST 398
P + ++D I GFPGETDEDF T+ L+ + + + ++ PRPG L T
Sbjct: 303 RSANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQET 361
>gi|357402124|ref|YP_004914049.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337768533|emb|CCB77246.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 519
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 181/368 (49%), Gaps = 14/368 (3%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
+T ++T+GC N DSE +AG L GY E+ AD+ + NTC V+ + + +
Sbjct: 3 AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 62
Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K A +P + V GC+ Q RD +++ V +V G I R+ ++E
Sbjct: 63 NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 122
Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E ++ + L A LP R + + + I+VGC CT+C RG +
Sbjct: 123 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 182
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V ++ADGV EV L ++ AYG DIG + + A +G +R +P
Sbjct: 183 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 241
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P
Sbjct: 242 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 299
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFS 406
I+TDII GFPGET+ DF QT+++++E +F Q Q+ RPG +D ++
Sbjct: 300 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 359
Query: 407 NYKFTVML 414
Y+ V L
Sbjct: 360 RYERLVAL 367
>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
Length = 448
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 184/346 (53%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++N EAD+ + NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + V +V G Q +R+ +++++ G++ L
Sbjct: 69 AKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQVFDGNQ--L 126
Query: 174 LHRKKLPAL-DLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ + + + D+ K RR+ + + I GC C+YC + RG S T E++ +
Sbjct: 127 VATEPIHIVEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGLEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V+ +P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVSNVP--GIERLRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + +E L L P V H+P QSG + +L AM R YT +R +++T+ + +
Sbjct: 245 HPRYFVERLIRACHEL--PEVCEHFHIPFQSGDNDILKAMARGYTHQKYRRIINTIRDYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPG 348
>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
Length = 473
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 18/351 (5%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
+ K G+ T +++TFGC N DSE +AG L A G+ TDN EEAD + NTC+V+ +
Sbjct: 31 AEKKGGSLTYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENAN 89
Query: 112 SAMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEV 161
+ + + + K KK + + GC+ Q ++++++ + IV G I + E+
Sbjct: 90 NRLYGHLGRMKVVKKNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAEL 149
Query: 162 VEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
V L +G + + DLP VR+ F + I GC C+YC + RG
Sbjct: 150 VHTKLNSEGMIIDIWKDTNQIVEDLPDVRKYTFKSGVNIMYGCNNFCSYCIVPYVRGRER 209
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTML 278
S + ++ V + +GVKEV L ++ +YG+ + PI ++ E+ +G +
Sbjct: 210 SREPKDIIREVERFVKEGVKEVMLLGQNVNSYGKTL--ENPISFAELLKEVSKVEGLERI 267
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R +P + + L E V P V +H+P+QSGS +L MNR YT + +V
Sbjct: 268 RFMTPHPKDLSDELIETMAVT--PKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELVKK 325
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ + +P + TDII GFPGET+EDFN T+++++E +F + + R G
Sbjct: 326 IRKRMPDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREG 376
>gi|423084190|ref|ZP_17072695.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|423086753|ref|ZP_17075144.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
gi|357543237|gb|EHJ25270.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|357545862|gb|EHJ27825.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
Length = 432
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 183/377 (48%), Gaps = 35/377 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY ++ E AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
++A GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 181 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDSTE 399
D+I GFPGET+E+F +T ++E + Q+HI ++ PR G Q + S +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 400 LLSLLFSNY-KFTVMLI 415
LL+L N+ KF I
Sbjct: 359 LLNLSKVNFNKFATKFI 375
>gi|418324135|ref|ZP_12935386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
gi|365227632|gb|EHM68824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
Length = 529
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 175/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG LSA GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 84 TFMIKTYGCQMNAHDTEVMAGILSALGYQPTEDINTADVILINTCAIRENAENKVFSEIG 143
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K K+ L V GC+ Q ++ LK + V ++ G I R+ E++EE K
Sbjct: 144 NLKHLKRERPDVLLGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHRLPEILEEAYLSK 203
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 204 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRKPEDII 263
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G +EV L ++ +YG+DI L L ++A++ +R ++P
Sbjct: 264 QEVRELAREGYQEVTLLGQNVNSYGKDID-GLDYGLGDLLADISKIDIPRVRFTTSHPWD 322
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+YT + +VD + +P +
Sbjct: 323 FTDRMIEV--IAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLNLVDRIKAQIPDVA 380
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E F + + R G
Sbjct: 381 LTTDIIVGYPNETEEQFEETLSLYDEVGFEHAYTYLYSERDG 422
>gi|210633082|ref|ZP_03297649.1| hypothetical protein COLSTE_01557 [Collinsella stercoris DSM 13279]
gi|210159236|gb|EEA90207.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Collinsella stercoris DSM
13279]
Length = 453
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 175/350 (50%), Gaps = 17/350 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N DSE ++G L + G + ++ADI + TC V+ + + +
Sbjct: 10 KTYFIRTFGCQMNLHDSERVSGLLDSLGCLQALDPKDADIVIFMTCCVREAADTRLYGQC 69
Query: 119 AKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG- 168
+ CKS ++ + V GC+ Q G L L+ V ++ G I V +++ +
Sbjct: 70 SSCKSLPASPSGRRVVAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGDLLADAFADG 129
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
VR+ A ++P R + +PI GC C+YC + RG S +E +V
Sbjct: 130 DRHVRVEEIDSGAATEMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMEEIV 189
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ GV+ V L ++ +YGRD G + P ++ + G + ++P
Sbjct: 190 DEVTGLVRQGVRSVTLLGQNVNSYGRDHG-SAPRFAE-LLRRVGETGVERIYFTSSHPKD 247
Query: 288 IL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+L E + IAEV P V LH+ VQSGS +L MNR+YT + +VD + + +P +
Sbjct: 248 LLPETIDAIAEV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVDRVRDRIPDI 304
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ TDII GFPGET+EDF QTV L+ E KF Q + R G +D
Sbjct: 305 ALTTDIIVGFPGETEEDFEQTVTLVDEAKFAQAFTFIYSKRAGTPAAEID 354
>gi|320353884|ref|YP_004195223.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
gi|320122386|gb|ADW17932.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfobulbus propionicus
DSM 2032]
Length = 450
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 180/355 (50%), Gaps = 29/355 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++ +Y+KTFGC N+ DSE M L+ GY + E AD+ LINTC+++ ++ + +L
Sbjct: 2 SKNLYIKTFGCQMNERDSEIMEQMLAQEGYVPAASPEGADVVLINTCSIREKAEQKVFSL 61
Query: 118 IAKCKS--AKKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ + + A+ P L V GCV Q G R + + V IVG QQI ++ E++ +G
Sbjct: 62 LGQLREEKARNPSLLLGVTGCVAQQEGERIRERMPHVDLIVGTQQIYQLPEMLARLTQGM 121
Query: 170 EVRLLHRKKLPALDLPKVRR-----------NKFVEILPINVGCLGACTYCKTKHARGHL 218
R + +P ++ + F + I GC C+YC RG
Sbjct: 122 TTRETATDLEGSFAIPPFQKLLINTPPSPAPHSFRRFVTIMQGCNNYCSYCVVPGTRGRE 181
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-----DIGVNLPILLNAIVAELPPD 273
S V ++ V +++ GVKE+ L ++ +YG+ D V+ P LL + +
Sbjct: 182 ISRPVADIMEEVEILVSQGVKEITLLGQNVNSYGKTNKVADTEVDFPQLLRQVAL---VN 238
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
G LR ++P + E L + C + H+PVQSGS+AVL MNR+YT+ ++
Sbjct: 239 GLRRLRFTTSHPKDLSEALMRCFAEIDILCPH--FHLPVQSGSNAVLQRMNRKYTVENYL 296
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
V +L L P + +ATDII GFPGET+ DF T++L++ +F ++ RP
Sbjct: 297 EKVASLRRLCPDIALATDIIVGFPGETEADFQATMDLLQTVRFHGSFSFKYSDRP 351
>gi|427406487|ref|ZP_18896692.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
gi|425707917|gb|EKU70958.1| MiaB-like tRNA modifying enzyme [Selenomonas sp. F0473]
Length = 434
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 175/344 (50%), Gaps = 22/344 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+ T GC NQ ++E M G A GY + E AD++++NTC+V S LI
Sbjct: 3 AVAFMTLGCKVNQFETETMEGLFRARGYEVVPFEERADVYVVNTCSVTHLSDRKSRQLIR 62
Query: 120 KCKSA--KKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ + + V GC Q +++ LEGV +V G ++ ++V+ VEE L+ +
Sbjct: 63 RAARTNPRACIAVCGCYAQVAPEEIRALEGVRVVIGTKERAQIVDYVEEALRAEDHVAGR 122
Query: 171 ----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
++ + +P +P R L I GC CT+C +ARG + S T+ ++
Sbjct: 123 ITDIMQARTFEDIPLAYMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRTLPAV 178
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++A G +E+ L+ GAYG D+ P L +A L G LR+
Sbjct: 179 RRETERLVAAGFREIVLTGIHLGAYGIDLA-ERPTLADACRTALSLPGLGRLRLSSLES- 236
Query: 287 FILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+E ++ E++R P + LH+P+Q+GSD VL+AMNR Y + F +++ + VPG
Sbjct: 237 --VELSADLLELIRTEPRFAAHLHLPLQAGSDGVLAAMNRHYDTAAFARLIEDVRRAVPG 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ ++TD+I GFPGET+ F + ++ I+ F ++H+ + PR G
Sbjct: 295 VAVSTDVIVGFPGETEAQFAEGMDFIRRMGFARMHVFPYSPRRG 338
>gi|386811689|ref|ZP_10098914.1| RNA modification protein [planctomycete KSU-1]
gi|386403959|dbj|GAB61795.1| RNA modification protein [planctomycete KSU-1]
Length = 452
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 185/354 (52%), Gaps = 25/354 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T++ +TFGC N+ D+E G L GY + DN EAD+ L NTC+V+ ++ + + +
Sbjct: 15 KTVFFETFGCQMNKLDAELSLGLLQEEGYRIVDNVNEADVILFNTCSVRQHAEDKVYSHL 74
Query: 119 AKCKSAKK--PLVVAG---CVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK P V+ G C+ Q G K + V +V G + R+ E++ + ++ H
Sbjct: 75 GSLKTLKKRHPDVIVGVLGCMAQKDGEAIFKRMPHVDLVCGTRMFSRLPELILK-IRSHG 133
Query: 171 VRLLHRKKLPALDLPKV---RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+L + +++ + R N + + GC C+YC + RG S T+ +
Sbjct: 134 SHVLAIDEDHIVNVKRAVTYRPNIHQAFVTVMRGCDNFCSYCIVPYVRGREVSRTITDIK 193
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V+ +IA+G KE+ L ++ +YG+ G+ I L +++EL G G+ F
Sbjct: 194 EEVQALIANGCKEITLLGQNINSYGK--GLQGAITLGDLLSELNDLG------GLDRIKF 245
Query: 288 ILEHLKEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+ H +++ + R V LH+P QSGSD +L M R YT + +R ++ EL
Sbjct: 246 VTSHPADMSRDIIRTISRLEKVCEHLHMPAQSGSDQILKRMRRGYTSTYYRELIQFAKEL 305
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+P + +A+D I GFPGET++DF +TV L+++ +F I ++ PR G + L+
Sbjct: 306 IPHLTVASDFIVGFPGETEKDFQETVKLMEDMRFQNCFIFKYSPRTGTKAAELE 359
>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 178/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEFSEDPNDASVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 ARRKHDDPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ P L V ++P G +R +
Sbjct: 187 ALSRQGYKEVTLLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + VL AM R YT+ +R ++ + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTVEKYRRIIQMIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPG 348
>gi|297568782|ref|YP_003690126.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
gi|296924697|gb|ADH85507.1| RNA modification enzyme, MiaB family [Desulfurivibrio alkaliphilus
AHT2]
Length = 452
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 34/364 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T +Y++TFGC N+ DSE M +S Y T EEAD ++NTC+++ + +L
Sbjct: 4 TRNLYIETFGCQMNERDSEIMTQLMSQAAYLETSRPEEADCIVVNTCSIRGKAAQKAYSL 63
Query: 118 IAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + KK + VAGCV Q G LK++ + +V G Q I R+ E+VE + +
Sbjct: 64 LGGYRRLKKRRPELVIAVAGCVAQQDGENLLKKMPHLDLVIGPQNIYRLPELVE-SARRQ 122
Query: 170 EVRLLHRKK---------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
R + LP ++ +FV I+ GC CTYC H RG S
Sbjct: 123 ATRTTATELSKDFVIPPFLPQVNGTATNHKRFVTIMQ---GCNNFCTYCVVPHTRGREVS 179
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--------NLPILLNAIVAELPP 272
E ++ VR + GV+EV L ++ +YG+D G + P LL A+VA
Sbjct: 180 RKPEDIINEVRHLADHGVREVTLLGQNVNSYGQDRGPAGTTGQIDDFPALLQAVVA---V 236
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
+G +R ++P + L + L C + H+PVQSGSD +L+ MNR+Y+ +D+
Sbjct: 237 EGIYRVRFTTSHPKDLSPELIDCFAQLNKLCPH--FHLPVQSGSDRILARMNRKYSRADY 294
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392
V L + P + I TD+I GFPGET+ DF T+ L+ ++ ++ RP
Sbjct: 295 LARVAQLRRVRPDIAITTDLIVGFPGETEADFEATMELVNFVRYDSAFSFKYSDRPNAAA 354
Query: 393 LNLD 396
D
Sbjct: 355 AAFD 358
>gi|386358193|ref|YP_006056439.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365808700|gb|AEW96916.1| hypothetical protein SCATT_45450 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 535
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 181/368 (49%), Gaps = 14/368 (3%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
+T ++T+GC N DSE +AG L GY E+ AD+ + NTC V+ + + +
Sbjct: 6 AKTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPGGEDTADVIVFNTCAVRENADNRLYG 65
Query: 117 LIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K A +P + V GC+ Q RD +++ V +V G I R+ ++E
Sbjct: 66 NLGRLAPKKAARPGMQIAVGGCLAQKDRDTIVRKAPWVDVVFGTHNIGRLPVLLERARIA 125
Query: 169 HEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E ++ + L A LP R + + + I+VGC CT+C RG +
Sbjct: 126 EEAQVEIAESLEAFPSTLPTRRESAYAAWVAISVGCNNTCTFCIVPALRGKEKDRRPGDI 185
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V ++ADGV EV L ++ AYG DIG + + A +G +R +P
Sbjct: 186 LAEVEALVADGVIEVTLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHPR 244
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + IA + P V LH+P+QSGSDAVL +M R Y + +++ + +P
Sbjct: 245 DFTDDV--IAAMAETPNVMHQLHMPLQSGSDAVLKSMRRSYRQDRYLGIIEKVRAAMPDA 302
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFS 406
I+TDII GFPGET+ DF QT+++++E +F Q Q+ RPG +D ++
Sbjct: 303 AISTDIIVGFPGETEADFEQTLHVVREARFAQAFTFQYSKRPGTPAATMDGQIPKEVVQE 362
Query: 407 NYKFTVML 414
Y+ V L
Sbjct: 363 RYERLVAL 370
>gi|336114420|ref|YP_004569187.1| MiaB family RNA modification protein [Bacillus coagulans 2-6]
gi|335367850|gb|AEH53801.1| RNA modification enzyme, MiaB family [Bacillus coagulans 2-6]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY TD AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ ++ + V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QQLVDAGYKELVLTGIHTGGYGQDLKDYNLAMLLRDL--EEKVQGLKRVRISSIEASQLT 239
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIGVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTG 337
>gi|303256206|ref|ZP_07342222.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
1_1_47]
gi|302860935|gb|EFL84010.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Burkholderiales bacterium
1_1_47]
Length = 441
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 183/347 (52%), Gaps = 20/347 (5%)
Query: 58 TETIYMKTFGCSHNQSDS-EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
+ IY+KTFGC N+ DS + +A GY +TD+ EAD+ + NTC+++ +Q + +
Sbjct: 3 AKKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFS 62
Query: 117 LIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + + KK + V GCV +G ++ V +V G Q + R+ E++E+ K
Sbjct: 63 DLGRVRELKKTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKNEKE 122
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H ++ + ++ D LP + + I GC C+YC + RG S VE +
Sbjct: 123 HRPQVDISFPEIEKFDHLPTPHADAATAFVSIMEGCSKYCSYCVVPYTRGEEFSRPVEDV 182
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + A GVKEV L ++ AY G D + LL VAE+ DG +R +
Sbjct: 183 LVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEI--DGIERIRYTTS 240
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P E + E R P + + +H+PVQ+GSD VL+ M R YT+ ++++++ L +
Sbjct: 241 HPK---EFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKLRAI 297
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + IATD I GFP ET+EDF +T+NLIKE KF + RPG
Sbjct: 298 RPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPG 344
>gi|331001262|ref|ZP_08324888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
excrementihominis YIT 11859]
gi|329568989|gb|EGG50785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Parasutterella
excrementihominis YIT 11859]
Length = 441
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 183/347 (52%), Gaps = 20/347 (5%)
Query: 58 TETIYMKTFGCSHNQSDS-EYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
+ IY+KTFGC N+ DS + +A GY +TD+ EAD+ + NTC+++ +Q + +
Sbjct: 3 AKKIYLKTFGCQMNEYDSGKIADIAKAAAGYEVTDDINEADLVVFNTCSIREKAQEKVFS 62
Query: 117 LIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + + KK + V GCV +G ++ V +V G Q + R+ E++E+ K
Sbjct: 63 DLGRVRELKKTKPNLKIAVGGCVASQEGGNIVRRAPYVDVVFGPQTLHRLPELLEKNEKE 122
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H ++ + ++ D LP + + I GC C+YC + RG S VE +
Sbjct: 123 HRPQVDISFPEIEKFDRLPTPHADAATAFVSIMEGCSKYCSYCVVPYTRGEEFSRPVEDV 182
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + A GVKEV L ++ AY G D + LL VAE+ DG +R +
Sbjct: 183 LVEIAQLAAQGVKEVTLLGQNVNAYRGEGPDGEIVDFALLLEYVAEI--DGIERIRYTTS 240
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P E + E R P + + +H+PVQ+GSD VL+ M R YT+ ++++++ L +
Sbjct: 241 HPK---EFTNRLIEAYRKIPILANHVHLPVQAGSDRVLAGMKRGYTILEYKSIIRKLRAI 297
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + IATD I GFP ET+EDF +T+NLIKE KF + RPG
Sbjct: 298 RPDISIATDFIVGFPNETEEDFEKTMNLIKEIKFDASFSFVYSKRPG 344
>gi|403384177|ref|ZP_10926234.1| hypothetical protein KJC30_05724 [Kurthia sp. JC30]
Length = 447
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 178/336 (52%), Gaps = 17/336 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC N ++E + GY TD ++D+++INTCTV + +I + K
Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERTDFDHQSDVYVINTCTVTNSGDKKSRQVIRRAVRK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVRLLHR 176
+ + V GC Q S ++ + GV IV G Q +++ ++E E + VR + +
Sbjct: 68 NPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRQKLLGLIEDYKVERQPINAVRNIMK 127
Query: 177 KKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ LD+P ++ L I GC CT+C ARG + S E +V + + ++
Sbjct: 128 NRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEQVVKQAQQLVD 186
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G KE+ L+ TG YG+D+ NL +LL A+ E G LRI I + E
Sbjct: 187 AGYKEIVLTGIHTGGYGQDLKDYNLAMLLRAL--ETKVKGLKRLRISSIEASQITD---E 241
Query: 295 IAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+ +VLR+ + + LH+P+QSGSD VL M R+YT+ F + L E++P + I +D+I
Sbjct: 242 VLDVLRNSKIIVNHLHIPIQSGSDTVLKRMRRKYTMEFFGQRLTQLKEVLPDLAITSDVI 301
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGET+E+F +T N I++Y+F ++H+ F R G
Sbjct: 302 VGFPGETEEEFMETYNFIRDYEFAELHVFPFSKRTG 337
>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
Hakam]
gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|376268207|ref|YP_005120919.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|364514007|gb|AEW57406.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|187477340|ref|YP_785364.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
avium 197N]
gi|123765978|sp|Q2KWE0.1|MIAB_BORA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|115421926|emb|CAJ48446.1| putative nucleic acid binding protein [Bordetella avium 197N]
Length = 475
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 192/381 (50%), Gaps = 32/381 (8%)
Query: 40 LHDNHLSKTGSLSPKIP-------GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTD 91
+H+ L + G+ +P P G+ IY++TFGC N+ DS+ M L G +TD
Sbjct: 1 MHETTLKREGASTPSNPTPSTHAAGSGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEMTD 60
Query: 92 NSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKEL 144
N EEAD+ L NTC+V+ +Q + + + + + KK + V GCV +G+ +K
Sbjct: 61 NPEEADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPNLVIGVGGCVASQEGAAIVKRA 120
Query: 145 EGVSIV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPIN 199
V +V G Q + R+ E++ +E + ++ +K ++P R + I
Sbjct: 121 PYVDVVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPSRVEGATAFVSIM 178
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRD 254
GC C++C + RG S E ++ V + GV+EV L ++ AY G D
Sbjct: 179 EGCSKYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRIEGSD 238
Query: 255 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 314
+ +LL V E+P G +R ++P + + + E R P + SFLH+PVQ+
Sbjct: 239 EIADFAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQA 293
Query: 315 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 374
GSD VL+AM R YT +F++VV L P + +++D I GFPGET+EDF +T+ LI +
Sbjct: 294 GSDRVLAAMKRGYTALEFKSVVRKLRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADV 353
Query: 375 KFPQVHISQFYPRPGIQFLNL 395
F + RPG +L
Sbjct: 354 GFDTSFSFVYSRRPGTPAADL 374
>gi|404482175|ref|ZP_11017402.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
gi|404344336|gb|EJZ70693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales bacterium
OBRC5-5]
Length = 475
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 173/342 (50%), Gaps = 25/342 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N DSE ++G L+ GY +N E+AD+ L NTCTV+ + + + K +
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGHLKKS 100
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS--------IVGVQQIDRVVEVVEE--TLKGH 169
K+ + + GC+ Q +++E+E + + G I ++ E++ E T K
Sbjct: 101 KEKNPDMIIGICGCMMQ---EVEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQ 157
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V ++ ++ LP R F + I GC C+YC + RG S E ++
Sbjct: 158 VVNVMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDE 217
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
++ ++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P
Sbjct: 218 IKGLVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKD 274
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + + E+ + + C + LH+P+QSGS +L MNR YT + +V + +P +
Sbjct: 275 LSDEVIEVMKKNKKICKH--LHLPLQSGSSDILKKMNRVYTKEGYLDLVRRIKAAIPDIS 332
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFPGET+ DF T++++KE ++ + R G
Sbjct: 333 LTTDIIVGFPGETERDFLDTLDVVKEVRYDSAFTFIYSKRSG 374
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L +E F + + PR G
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREG 408
>gi|423582518|ref|ZP_17558629.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
gi|401213397|gb|EJR20138.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|329122066|ref|ZP_08250674.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
DSM 19965]
gi|327466873|gb|EGF12389.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister micraerophilus
DSM 19965]
Length = 445
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 181/347 (52%), Gaps = 22/347 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ + T GC NQ DS+ M GY ++SE AD+++INTC+V S
Sbjct: 10 NTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHSEVADVYIINTCSVTSIGDRKSRQ 69
Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE-- 170
+I K + V+A GC Q +L+++ V IVG Q +++V+ +EE K +
Sbjct: 70 VIRKIRRNNPDAVIAATGCYAQVAPEELEKMGDVDVIVGHQNRNKIVDYIEEAEKSEKTV 129
Query: 171 ------VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ + + L +V+ FV++ GC CT+C +ARG L S E
Sbjct: 130 NAVKDIMSIREYENLTVDPEGEVKARAFVKVQE---GCDNYCTFCIIPYARGRLKSRKQE 186
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM 282
V ++ ++ G +EV L+ G YG+D+ G +L L++ ++ ++P +R+G
Sbjct: 187 DAVDEIKKLVEKGYREVVLTGIHLGNYGKDLRNGTSLSTLVSELL-KIP--NLLRIRLGS 243
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+ + L I + + C + LH+P+QSGSDAVL +MNR Y L ++ ++ L +
Sbjct: 244 IESVELSDELINIIKNEKRVCHH--LHLPLQSGSDAVLKSMNRHYRLRQYKDLIAMLRKK 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + + TD+I GFPGET+E+F +T+N + E KF +H+ F R G
Sbjct: 302 IPNLALTTDLIVGFPGETEENFKETLNTLHELKFSAIHVFPFSKRTG 348
>gi|168187871|ref|ZP_02622506.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169294276|gb|EDS76409.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 433
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/338 (33%), Positives = 177/338 (52%), Gaps = 17/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + D E AD++++NTCTV + S ++++ K
Sbjct: 7 TLGCRVNMYESEAMAEKFIKNGYEVVDFDEMADVYVVNTCTVTNMSDKKSRQMLSRAKRK 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
V+A GC Q +KE+ V ++ G + +V V EE EV +L
Sbjct: 67 NPNSVIAAVGCYTQIAPEKVKEIGDVDVILGTRNKGDIVYWVNRAKEEDKTIVEVNDVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC ARG + S + ++ V+ + A
Sbjct: 127 NKKFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPKIVIDEVKKLAA 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE-HLK 293
G KEV LS D +YG D+ + +L I+ E+ DG T +RIG P F E ++
Sbjct: 186 HGFKEVILSGIDISSYGVDLEGDWNLL--NILKEIDKIDGITRVRIGSIGPEFFNEDRIR 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
+I L+ C + H+ +QSG + L MNR+YT+ +F V++ L + + + I TDII
Sbjct: 244 QIGN-LKKLCPH--FHLSLQSGCNETLKRMNRKYTIEEFENVINLLRKYIKDISITTDII 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGETD++F +T +K K ++HI ++ PR G +
Sbjct: 301 VGFPGETDDEFKKTYEYLKRIKLSKMHIFKYSPRTGTR 338
>gi|344995956|ref|YP_004798299.1| MiaB family RNA modification protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964175|gb|AEM73322.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 434
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 179/341 (52%), Gaps = 27/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ ++++++E V I+ G + R+V+ V + L+ +KK+
Sbjct: 67 SPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQRIVDYVRQYLED-------KKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A+D + +R F E+ + I GC C+YC +ARG + S ++S+
Sbjct: 120 AID-GEYKREAFEELKISEFNEHSRAFIKIEEGCDQFCSYCIIPYARGAVRSRGLKSIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR ++ G KE ++ + AYG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVRRLVQKGYKEFVITGINISAYGKDLDGKVT-LIDVIERVNEIEGVKRIRLSSLEPVIM 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ I +L + LH+ +QSGSD +L MNR YT + ++ +VD + E +
Sbjct: 238 NDEF--IERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDVAF 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ G
Sbjct: 296 TTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKG 336
>gi|302335738|ref|YP_003800945.1| MiaB family RNA modification protein [Olsenella uli DSM 7084]
gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
Length = 455
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 176/360 (48%), Gaps = 26/360 (7%)
Query: 45 LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTC 104
+++ G L K T +++TFGC N DSE +AG L G +EADI + TC
Sbjct: 1 MARVGELVGK-----TYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTC 55
Query: 105 TVKSPS------QSAMDTLIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQI 155
+V+ + +++ + + S ++ + V GC+ Q G R + + V +V G +
Sbjct: 56 SVREKADTHLFGEASNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSAL 115
Query: 156 DRV----VEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211
V VE +EE V + + +LP R F +PI GC CTYC
Sbjct: 116 ASVPALLVEALEEGGGRVHVDTSEEGRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIV 175
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAE 269
H RG S E +V ++ADGV+E+ L ++ +YGRD+ LL A+
Sbjct: 176 PHVRGRERSRAFERVVDECARLVADGVREITLLGQNVNSYGRDLYGEPRFAELLQAV--- 232
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
G +R +NP + + IA + P V LH+ VQSGS +L AMNR YT
Sbjct: 233 -GETGVERIRFTSSNPKDL--SAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTR 289
Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ V+ + +PG+ ++TDII GFPGET+EDF T++L++E F + + RPG
Sbjct: 290 EGYLDVIRDIKAAIPGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPG 349
>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
Length = 478
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|359148544|ref|ZP_09181685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
sp. S4]
Length = 513
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 175/353 (49%), Gaps = 16/353 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NTC V+ + +
Sbjct: 20 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 79
Query: 114 MDTLIAKCK--SAKKP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
+ + + K+P + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 80 LYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 139
Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 140 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 199
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 200 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 258
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 259 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 316
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPG +D
Sbjct: 317 PEAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMD 369
>gi|284929598|ref|YP_003422120.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
gi|284810042|gb|ADB95739.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [cyanobacterium UCYN-A]
Length = 448
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 171/340 (50%), Gaps = 18/340 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ TD ++A++ L NTCT++ ++ + + + K
Sbjct: 13 TFGCQMNKADSERMAGILEDMGFQWTDVLDQANLILYNTCTIRDSAEQKVYSYLGKQAKR 72
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K L VAGCV Q G + L+ + + +V G Q ++ + +++E+ LKG+++
Sbjct: 73 KHKDPSLILAVAGCVAQQEGEKILRRIPELDLVMGPQHVNYLGDLLEQVLKGNQIVATEP 132
Query: 177 KKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ K RR +K + I GC C+YC RG S T E + ++ +
Sbjct: 133 IHIIE-DITKPRRASKITAWVNIIYGCNERCSYCVVPSVRGLEQSRTPEDICSEIKLLEQ 191
Query: 236 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
G KEV L ++ AYGRD+ G N + + +R ++P +
Sbjct: 192 QGYKEVTLLGQNIDAYGRDLPGTTETGRNQYTFTDLLYRIHEVSNIKRIRFATSHPRYFT 251
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L I+ P + H+P QSG + +L M R YT +R ++D + +P I
Sbjct: 252 ERL--ISACHELPNICEHFHIPFQSGDNDILKKMKRGYTHQRYRQLIDKVRYYMPNASIT 309
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D I GFPGET++ F T+ L+++ F Q++ + + PRPG
Sbjct: 310 ADAIVGFPGETEQQFENTLKLVEDIGFDQLNTAAYSPRPG 349
>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVS--GLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|384188384|ref|YP_005574280.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676699|ref|YP_006929070.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452200776|ref|YP_007480857.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175828|gb|AFV20133.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452106169|gb|AGG03109.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|402564224|ref|YP_006606948.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
gi|401792876|gb|AFQ18915.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 437
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/344 (32%), Positives = 172/344 (50%), Gaps = 34/344 (9%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL A GY T+ + +AD+ LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 126 K--PLVV---AGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------VVEETL 166
+ P ++ GC+ Q G ++ + V VQ++ R+V VV+ L
Sbjct: 70 EHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPVVDVAL 129
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H V DLP R +PI GC CTYC + RG S T E +
Sbjct: 130 DAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRTPEEV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V VR ADG +EV L ++ +YG+D G + LL + A +G +R ++P
Sbjct: 181 VAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMTSHP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R + E +PG
Sbjct: 238 KDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREALPG 295
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TD+I GFPGET+EDF +T++ ++E ++ + + R G
Sbjct: 296 ASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSG 339
>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817086|ref|YP_002817095.1| MiaB family RNA modification protein [Bacillus anthracis str. CDC
684]
gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Vollum]
gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Australia 94]
gi|386738199|ref|YP_006211380.1| MiaB family RNA modification protein [Bacillus anthracis str.
H9401]
gi|421506565|ref|ZP_15953488.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
684]
gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|384388051|gb|AFH85712.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
H9401]
gi|401823558|gb|EJT22705.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
Length = 450
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVEFDTAFTFIYSPREG 405
>gi|333978768|ref|YP_004516713.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822249|gb|AEG14912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 445
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 184/352 (52%), Gaps = 20/352 (5%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
+ +IP E I TFGC N DSE +AG L + GY ++ EAD+ L+NTC V+ +
Sbjct: 1 MKERIPTYEVI---TFGCQMNDHDSEVIAGMLESLGYEPAASTGEADVILVNTCCVRETA 57
Query: 111 QSAMDTLI---AKCKSAKKPLVV--AGCVPQG---SRDLKEL--EGVSIVGVQQIDRVVE 160
++ + L+ A K K L++ AGC+ Q +R +K + I+G + R+ E
Sbjct: 58 ENKIYGLLGRLAHLKDKKGDLIIGIAGCMTQQPGVARKIKNRFPQVDLILGTHNLHRLPE 117
Query: 161 VVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
++ + + E + + + +LP R ++ + I GC CTYC + RG
Sbjct: 118 LLLQARECRERVMEVWDQAGEIVENLPIRRASRVKAWVNITYGCNNFCTYCIVPYVRGRE 177
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTM 277
S E ++ +R ++ +G +EV L ++ +YG+D+ G L A V ++P G
Sbjct: 178 RSRRPEDILNEIRQLVQEGYREVTLLGQNVNSYGKDLPGPTSFARLLAEVDQIP--GLWR 235
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R ++P + L I + R P V +H+PVQ+GS+ +L MNR Y + +V+
Sbjct: 236 IRFTTSHPRDFTQEL--IDTIARCPHVCEHIHLPVQAGSNRILKLMNRGYDRDYYLDLVE 293
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +PG+ I TDI+ GFPGET+EDF QT++L++ +F + PRPG
Sbjct: 294 RIRRAIPGVAITTDIMVGFPGETEEDFAQTMDLVERVRFDGAFTFVYNPRPG 345
>gi|188586422|ref|YP_001917967.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351109|gb|ACB85379.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 451
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 182/344 (52%), Gaps = 34/344 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDTLIAKCKS 123
T GC NQS+S+ M +L GY+ T ++ ADI++IN+CTV +Q+A + +
Sbjct: 14 TLGCPLNQSESDLMRARLHQAGYSETGTGDDTADIYIINSCTV---TQNAARKSRKEARK 70
Query: 124 AKKP-----LVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKGHEVRL 173
AKK + + GC G + +E+ E I+G + ++ +E L G E+ L
Sbjct: 71 AKKGNPDAWVCLVGCY--GEMEYEEIKEKIPEIDLIIGTRNREKAIE----KLVGQELDL 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
P D ++R +K + I GC +C+YC ARG S + +V++
Sbjct: 125 NQFHNFPQ-DNNEIRPDKIRPAIKIQEGCDQSCSYCIVTLARGRPKSREFRQIKQQVKSY 183
Query: 234 IADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ +G +E+ L+ + G YG+D+ ++LP+L++ + A LP D +RI
Sbjct: 184 LEEGYQEIILAGTNMGLYGKDVKGQSKHSYKFIDLPMLVSEL-ATLPYD-DYRIRISSLE 241
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L + + H + ++L++P+QSGSD +L MNR+YT DF +V+ L+P
Sbjct: 242 PLEMTEEL--LYAMKEHDKICNYLYLPLQSGSDRILKLMNRKYTTDDFARIVEKAKTLLP 299
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
G+ I TD+I GFPGE +ED T+ ++E K ++H+ + PRP
Sbjct: 300 GVGIMTDLIVGFPGEKEEDHKATMEFVEELKLSKLHVFPYSPRP 343
>gi|373487449|ref|ZP_09578117.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
6591]
gi|372009531|gb|EHP10151.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Holophaga foetida DSM
6591]
Length = 434
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 21/347 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++T+GC N DSE ++G L G+A + EEAD+ ++NTC+++ + + +++ +
Sbjct: 3 FFIETWGCQMNDHDSEKLSGMLDKQGFAPAASQEEADLVILNTCSIREKAVHKVYSVLGR 62
Query: 121 CKSAK--KPLVV--AGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K +PL+V AGC+ Q +D K + V G I ++ +VEE H+ R+
Sbjct: 63 LREEKLQRPLIVGVAGCLAQQEKDALFKRAPHIDFVLGTMAIQQLPRLVEEARARHK-RV 121
Query: 174 LHRKKLPALDL--PKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ P L P+V RR+ ++ I GC ACTYC RG E ++
Sbjct: 122 IDTQQYPDNHLFPPEVTQRRDTAKALVTIIEGCNHACTYCVVPTTRGPERHRPYEDVLAE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
VR ++ DG +EV ++ +Y G N LL+ +E+ DG +R ++P +
Sbjct: 182 VRQLVKDGYREVEFLGQNVNSY--QGGCNFAELLDR-ASEI--DGLEWIRFTTSHP---M 233
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+E+A+ L +P + FLH+P+QSGSDAVL M R YT+ + + L E +
Sbjct: 234 NFTRELAQTLVSNPKIAPFLHLPIQSGSDAVLRRMGRHYTVDQYLERLGYLGEGRSRFSL 293
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+TD I GFPGETDEDF T+ +++ K+ + PRPG L +
Sbjct: 294 STDFIVGFPGETDEDFEGTLRVLETVKYDTSFSFVYSPRPGTPALKM 340
>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|335049650|ref|ZP_08542637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|333762385|gb|EGL39883.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
Length = 442
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 176/348 (50%), Gaps = 24/348 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + Y+ T+GC N SDSE AGQL A GY LT+ + AD+ L+NTC V+ ++
Sbjct: 5 GNKFAYIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKTLG 64
Query: 117 LIAKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
I + K K+ + V GC+ Q R + + +V G I ++ +++E
Sbjct: 65 KIGELKHYKERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQERQGK 124
Query: 169 HEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L LPA DLP R +KF +PI GC CTYC H RG S V +V
Sbjct: 125 SGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPVAEIV 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + DG KEV L ++ +YG D+ G + L+ A+ E P G +R ++P
Sbjct: 185 REVAQLGKDGYKEVTLLGQNVNSYGLDLRDGTDFGTLVEAL--ETVP-GVERIRYMTSHP 241
Query: 286 ----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
P +++ + + V+ H LH+P+QSGS+A+L MNR YT+ + ++ +
Sbjct: 242 KDMTPAMIDAIAAGSRVVHH------LHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYARK 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ + + TD+I GFPGET+ F +T+ LI++ + + + PR G
Sbjct: 296 KMSDLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTG 343
>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|423585210|ref|ZP_17561297.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|423631033|ref|ZP_17606780.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|423640609|ref|ZP_17616227.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|423650175|ref|ZP_17625745.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|423657266|ref|ZP_17632565.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|401233853|gb|EJR40339.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|401264400|gb|EJR70512.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|401279670|gb|EJR85592.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|401282593|gb|EJR88492.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|401290009|gb|EJR95713.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 441
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 185/342 (54%), Gaps = 19/342 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++KTFGC N +DSE + G L GY ++ EEAD+ L+NTCT++ + + I +
Sbjct: 6 FIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHIGEY 65
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 172
K K+ + V+GC+ Q G +++ V I+ + ++ E++ + G++ V
Sbjct: 66 KKIKERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQAGYKAVA 125
Query: 173 LLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+L + D P R N + + I GC CTYC RG S ++ S++
Sbjct: 126 ILEAPPEDEDAVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKERSRSMYSILEE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
V+ ++ +GV+E+ L ++ A+G+D PI + ++ E+ DG +R +P +
Sbjct: 186 VKKLVDEGVREIHLLGQNVTAWGKDF--ERPIPFSELLYEVSKVDGVERIRFTTGHPKDL 243
Query: 289 LEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ E +A++ P V + LH+P Q+GSD +L M+R+YT + ++ L E V +
Sbjct: 244 TDDTVEAMADI---PQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRLKEAVEDIA 300
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++TDII GFP ETDEDF T+++++E +F QV ++ PRPG
Sbjct: 301 LSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPG 342
>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. A1055]
gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Kruger B]
gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|421638385|ref|ZP_16078981.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
gi|423400843|ref|ZP_17378016.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|423478452|ref|ZP_17455167.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|401653833|gb|EJS71376.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|402428614|gb|EJV60711.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|403394811|gb|EJY92051.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
Length = 514
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 177/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L+ ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLSDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDG 407
>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase protein MiaB [Caldicellulosiruptor
obsidiansis OB47]
gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
obsidiansis OB47]
Length = 471
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 172/350 (49%), Gaps = 41/350 (11%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P RR + I GC CTYC + RG S E ++ +
Sbjct: 162 ISEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI-----------VAELPPDGSTMLR 279
++ +GVKEV L ++ +YG+D+ G+ P LL + V P D S L
Sbjct: 222 LVQNGVKEVTLLGQNVNSYGKDLANGITFPKLLEKVNEIKGIERIRFVTSHPKDLSDELI 281
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ M + + EH+ H+PVQSGS +L AMNR YT D+ +V+ L
Sbjct: 282 VAMRDLDKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLVEKL 325
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + I TDII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 326 KTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRG 375
>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423634866|ref|ZP_17610519.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401278852|gb|EJR84782.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 175/340 (51%), Gaps = 15/340 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY TD +D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ NL +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ + E+ + + V LH+P+QSGS+ VL M R+YT+ F +D L E +PG+ +
Sbjct: 240 DEVIEVMD--KSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALPGLAVT 297
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R G
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTG 337
>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
gi|218899478|ref|YP_002447889.1| MiaB family RNA modification protein [Bacillus cereus G9842]
gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|423358653|ref|ZP_17336156.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|423385812|ref|ZP_17363068.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|423426443|ref|ZP_17403474.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|423437756|ref|ZP_17414737.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|423503004|ref|ZP_17479596.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|423527831|ref|ZP_17504276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|423561222|ref|ZP_17537498.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|434377478|ref|YP_006612122.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|449091273|ref|YP_007423714.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|401084525|gb|EJP92771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|401111190|gb|EJQ19089.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|401120911|gb|EJQ28707.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|401201479|gb|EJR08344.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|401635868|gb|EJS53623.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|401876035|gb|AFQ28202.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|402451494|gb|EJV83313.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|402459225|gb|EJV90962.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|449025030|gb|AGE80193.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
Length = 450
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREG 404
>gi|315651497|ref|ZP_07904518.1| 2-methylthioadenine synthetase [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486232|gb|EFU76593.1| 2-methylthioadenine synthetase [Lachnoanaerobaculum saburreum DSM
3986]
Length = 440
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEAD+ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAILEAS 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + K L+V GC+ Q +D +KE+ V +++G D++VE VEE L G +
Sbjct: 65 KLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLDDLIAQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + G+KE+ L +++T YG DI LP LL + +G +RI P I
Sbjct: 183 KDLATQGIKELILVAQETTLYGVDIYGKKTLPKLLKELA---KIEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ C Y L +P+Q SD +L M R T D ++ L +P + +
Sbjct: 240 TDELIDVIASEDKVCKY--LDIPIQHASDNILRRMARRTTYDDLVNIIGRLRNNIPDITL 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T II GFPGET ED + + IK+ KF ++ + + G
Sbjct: 298 RTTIIAGFPGETVEDVDTVIEFIKQMKFERLGVFTYSEEEG 338
>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
Length = 437
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 181/351 (51%), Gaps = 20/351 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NTC V+ +++ + I
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K K+ + V GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 171 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ + TDII GFPGET++DF T+ L+K+ ++ + + R G +D
Sbjct: 295 VVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMD 345
>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
Length = 420
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 170/338 (50%), Gaps = 21/338 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLLHRKK 178
L + GC+ QG +E + G V D V E V E
Sbjct: 65 ADETADLYITGCMALAQG----EEFAAADVDGRVLHWDEVPEAV----TNGECPTTTPDA 116
Query: 179 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 238
P LD V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 239 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 298
KE+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASV 227
Query: 299 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 357
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDQLDYWTLSTDFIVGFP 287
Query: 358 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
ETD D Q++ L++E + ++++++F RPG +
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAKM 325
>gi|304439566|ref|ZP_07399471.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371945|gb|EFM25546.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 433
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 176/346 (50%), Gaps = 28/346 (8%)
Query: 63 MKTF-----GCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTCTVKSPSQSAMDT 116
MKTF GC NQ +SE M GY D+ + AD++++NTCTV + S
Sbjct: 1 MKTFSILTLGCKVNQYESEAMKEIFEKNGYIEVDSETDVADVYVVNTCTVTNLSDRKSRQ 60
Query: 117 LI--AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
I AK ++ + V GC Q S D ++ +EGV I+ G R+ E+VE K + +
Sbjct: 61 YIRRAKRENPDSIVCVVGCYSQVSPDEVQAIEGVDIIMGTTDRSRIFELVE-NFKKDKNQ 119
Query: 173 LLHRKKLPAL-DLPKVRRNKFVEI----LPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ K L + + +K E+ + + GC CTYC +ARG + S T+E V
Sbjct: 120 ISIVKSLKGFTEFQHIEIDKESEMTRSYMKVQDGCNRYCTYCIIPYARGPIRSRTIEDSV 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+ + G KE+ L+ G+YG+D+G L++ I DG +R+ P
Sbjct: 180 EEAKRLSEAGYKELVLTGIHIGSYGKDLGDER--LVDLIEEITKVDGIERIRLSSIEPIT 237
Query: 288 I----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
I LE +K +V H H+ +QSGS+AVL AMNR YT ++ D + E
Sbjct: 238 ITRDFLERIKATGKVCDH------FHLSLQSGSNAVLKAMNRRYTREEYIETCDLIREYY 291
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + + TDII GFPGETDEDF TV+L+K +F ++H+ ++ R G
Sbjct: 292 PYVGLTTDIIVGFPGETDEDFEDTVDLVKRVEFSKIHVFKYSKRSG 337
>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
Length = 505
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 180/371 (48%), Gaps = 16/371 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINTCTVKSPSQSA 113
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NTC V+ + +
Sbjct: 40 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 99
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 165
+ + + K +P + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 100 LYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159
Query: 166 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 219
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 220 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 278
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 279 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 336
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPG +D +
Sbjct: 337 PDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 396
Query: 404 LFSNYKFTVML 414
+ Y V L
Sbjct: 397 VQERYMRLVAL 407
>gi|427720831|ref|YP_007068825.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
gi|427353267|gb|AFY35991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
Length = 454
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 180/347 (51%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ +Q + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADLILYNTCTIRDNAQHKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L++AGCV Q G L+ + + +V G Q +R+ +++E L+G++V
Sbjct: 69 AKRKHEQPNLKLILAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLESVLEGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEIE 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + + + ++P G +R +
Sbjct: 187 ALGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYIHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLTADIGFDMLNTAAYSPRPG 348
>gi|76802239|ref|YP_327247.1| hypothetical protein NP3198A [Natronomonas pharaonis DSM 2160]
gi|76558104|emb|CAI49690.1| MiaB-like tRNA modifying enzyme [Natronomonas pharaonis DSM 2160]
Length = 414
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 171/341 (50%), Gaps = 25/341 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +++T+GC+ N+ +S + +L G+ D E+AD+ ++NTCTV ++ M
Sbjct: 3 TYHIETYGCTSNRGESRQIERKLRDAGHYRVDTPEKADVAILNTCTVVEKTERNMLRRAE 62
Query: 120 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV---EVVEETLKGHEVRLLHR 176
+ ++ L+V GC+ D ID V E V + E
Sbjct: 63 ELEAETADLIVTGCMALAQGD----------EFGDIDAQVLHWEDVPTAVTNGECPTTTP 112
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
P LD V ILPI GC+ C+YC TK A G + S V V + R ++
Sbjct: 113 DAEPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHA 165
Query: 237 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
G KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP + +E+
Sbjct: 166 GAKELRITGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGVHGIHEEL 222
Query: 296 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
A+V + +Y+F+H PVQSGSD VL M R++ + F+ +VD E + ++TD I
Sbjct: 223 ADVFAENEKLYNFIHAPVQSGSDDVLEDMRRQHRVEKFKDIVDAFDERLDHWTLSTDFIV 282
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
GFP E + D ++ L+ E + ++++++F RPG ++
Sbjct: 283 GFPTEDEADHELSMELLAEVRPEKINVTRFSKRPGTDAADM 323
>gi|220909156|ref|YP_002484467.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7425]
gi|219865767|gb|ACL46106.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7425]
Length = 446
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 183/354 (51%), Gaps = 26/354 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
+ T ++ TFGC N++DSE MAG L G+ +N E AD+ L NTCT++ ++ +
Sbjct: 1 MSATRRYHITTFGCQMNKADSERMAGVLEDLGFIWEENPEVADLVLYNTCTIRDNAEQKV 60
Query: 115 DTLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
+ + K K+ LVVAGCV Q G + L+ + + +V G Q +R+ E++E+
Sbjct: 61 YSYLGKQARRKRDRPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQYANRLGELLEQVF 120
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVE 224
G++V ++ D+ K RR+ V +NV GC CTYC + RG S T
Sbjct: 121 NGNQVVATEPLQI-VEDITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPA 178
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGST 276
++ + + G KEV L ++ AYGRD+ G + L + + + ++P G
Sbjct: 179 AIRAEIEELARQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYIHDVP--GIE 236
Query: 277 MLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
+R ++P + E L + AE+ P V H+P QSG + +L AM R YT + +
Sbjct: 237 RIRFATSHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTREKYLGI 293
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++ + +P I+ D I GFPGET+ F T+ L++ F Q++ + + PRPG
Sbjct: 294 IEKIRSYMPDASISADAIVGFPGETEAQFINTLELVETVGFDQLNTAAYSPRPG 347
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDHLIDV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
Length = 447
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 182/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ ++N + A++ + NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LVVAGCV Q G L+ + + +V G Q +R+ ++++ G++V
Sbjct: 69 AKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDSVFAGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T E++ G +
Sbjct: 129 TEEVHILE-DITQPRRDSRVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRGEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G +E+ L ++ AYGRD+ G NL + + V ++P G +R +
Sbjct: 187 ILGQQGYREITLLGQNIDAYGRDLPGSTTEGRNLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P + H+P QSG + +L AM+R YT +R +++T+
Sbjct: 245 HPRYFTERLIKACAEL---PKICEHFHIPFQSGDNEILKAMSRGYTQEKYRRIINTIRSY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEIQFQNTLQLVDDIGFDHLNTAAYSPRPG 348
>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
Length = 447
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 183/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA-- 119
++ TFGC N++DSE MAG L G+ + + +A++ L NTCT++ ++ + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSQDPNDANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 120 ---KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K + A LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHEQADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKDME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G +L L + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDKIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPG
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPG 348
>gi|338813200|ref|ZP_08625334.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
gi|337274807|gb|EGO63310.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
Length = 430
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 182/354 (51%), Gaps = 31/354 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC NQ ++E + G + GY L + AD+++INTC+V + LI
Sbjct: 3 TVAFATLGCKVNQFETETLEGLFVSRGYELVAFQDYADVYVINTCSVTHIGEKKSRQLIR 62
Query: 120 KCKSAKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG----HE 170
+ S + P +VV GC Q + + GV +V G Q ++V++VEE +K +
Sbjct: 63 RA-SKQNPAAAVVVTGCYAQIEPGTIAGIPGVDVVVGTQDRQKIVDIVEEHVKTSLPINA 121
Query: 171 VRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
VR + H + +P +++N+ L I GC CTYC + RG L S ++ES+
Sbjct: 122 VRSIMEADHFEDIPL----HIKQNRTRAFLKIQEGCRNYCTYCIIPYTRGPLRSRSLESI 177
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM---- 282
+ R ++A G +E+ L+ GAYG+ + N+ L + + + L +G LR+G
Sbjct: 178 LAECRKLVAAGFQEIVLTGIHLGAYGKGLEENVS-LTDVVRSILGVEGLARLRLGSLESL 236
Query: 283 -TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
+ P I L++ + RH LH+P+QSGSD +L MNR YT + ++ +
Sbjct: 237 EADQPLIDLMLQD-ERLCRH------LHLPLQSGSDEILRRMNRHYTCEQYAQLIRQIQR 289
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
VP + I+TD+I GFPGET+E F +T+ I + F +VHI + R G N
Sbjct: 290 QVPDIAISTDVIIGFPGETEELFRETLAFITQMPFAKVHIFPYSRRKGTPAANF 343
>gi|424836394|ref|ZP_18261043.1| RNA modification protein [Clostridium sporogenes PA 3679]
gi|365977088|gb|EHN13191.1| RNA modification protein [Clostridium sporogenes PA 3679]
Length = 432
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 175/343 (51%), Gaps = 27/343 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV--------GVQQIDRVVEVVEETLKGHEVRL 173
++K + V GC Q ++ ++EGV +V V I+R +E + ++ +V
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV-- 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR +
Sbjct: 125 LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRKL 183
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 184 SKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIQRIRIGSIDPTFFTEE 240
Query: 292 LKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E++R + F H+ +QSG + L MNR+YT+ +R +V L + + I
Sbjct: 241 -----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYREIVYNLRTNIEAVSI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
TDII GFPGET+E+FN+T +K+ K ++H+ +F PR +
Sbjct: 296 TTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATK 338
>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 514
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDG 407
>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
sp. Grbi]
Length = 526
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 177/339 (52%), Gaps = 15/339 (4%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N+ D+E MAG L+ GY T+++++ADI L+NTC ++ +++ + I K
Sbjct: 87 IRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIGHLK 146
Query: 123 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 170
+ K+ L V GC+ Q +R +K+ V ++ G I R+ +V+E + G E
Sbjct: 147 ALKREKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVKEAMFGKEKV 206
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + ++ +LPK R+ K + I GC CTYC RG S E ++ V
Sbjct: 207 VEVWSKEGDIIENLPKARKGKVKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEV 266
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
R + A G KE+ L ++ AYG+D + L ++ +L +R ++P +
Sbjct: 267 RHLTAQGYKEITLLGQNVNAYGKDFE-DSDYGLGDLMDDLHKIDIPRIRFTTSHPRDFDD 325
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L E+ + + + +H+PVQSGS VL MNR YT ++ +V + E +P + T
Sbjct: 326 RLIEV--LAKGGNLLDHIHLPVQSGSSEVLKKMNRRYTREEYLELVRKIREAMPNATLTT 383
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFP ET+E F +T++L++E F + PR G
Sbjct: 384 DIIVGFPNETEEQFEETMSLVEEVGFESAFTFIYSPREG 422
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NTC ++ +++ + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 121 CKSAKKP-----LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ L V GC+ Q R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREG 404
>gi|326389860|ref|ZP_08211424.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
200]
gi|392941247|ref|ZP_10306891.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter siderophilus
SR4]
gi|325994128|gb|EGD52556.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus JW
200]
gi|392292997|gb|EIW01441.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter siderophilus
SR4]
Length = 455
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 14/346 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+T+ T GC NQ ++E MA GY + D +E+AD+++INTCTV +S +S +
Sbjct: 21 KTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEI 80
Query: 117 LIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLL 174
A+ K+ +V AGC Q S + L V I +G + D++VE+VEE + ++ +
Sbjct: 81 RKARKKNPDALVVAAGCYVQVSPEEAFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 140
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + E + I GC CTYC +ARG + S + ++ V
Sbjct: 141 VNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGPVRSRDPKKVLDEV 200
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 201 KRFADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKMIHEIDGIKRIRLSSIEPTFLTE 258
Query: 291 H-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+KEIA + P + HV +QSG D L M R YT ++++V+D L E + + I
Sbjct: 259 EFVKEIANL---PKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLREYIKDVAIT 315
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD++ GFPGET+E+F +T ++E F ++H+ ++ R G + N
Sbjct: 316 TDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNF 361
>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
Length = 499
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 188/377 (49%), Gaps = 25/377 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQS 112
+P ++ ++T+GC N DSE ++G L GY A D+ +AD+ + NTC V+ + +
Sbjct: 3 VPAPKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADN 62
Query: 113 AMDTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
+ + + + A +P + V GC+ Q RD +K+ V +V G I ++ ++E
Sbjct: 63 RLYGNLGRLAPRKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLER 122
Query: 165 TLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 123 ARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRR 182
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRI 280
++ V ++A+GV E+ L ++ AYG DIG LL A + + R+
Sbjct: 183 PGDVLAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERV 237
Query: 281 GMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
T+P F + ++ +AE P V LH+P+QSGSD VL AM R Y + +++
Sbjct: 238 RFTSPHPRDFTDDVIEAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 294
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDS 397
+ +P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPG ++
Sbjct: 295 KVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMED 354
Query: 398 TELLSLLFSNYKFTVML 414
++ + Y+ V L
Sbjct: 355 QIPKKVVQARYERLVAL 371
>gi|443318778|ref|ZP_21048022.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 6406]
gi|442781604|gb|ELR91700.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 6406]
Length = 453
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 178/352 (50%), Gaps = 26/352 (7%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P ++ TFGC N++DSE MAG L G T++ +A++ L NTCT++ ++ +
Sbjct: 3 PSPRQYHITTFGCQMNKADSERMAGILETMGLTWTEDPNDANVVLYNTCTIRDNAEQKVY 62
Query: 116 TLIAKCKSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ + + K +P L+VAGCV Q G L+ + + +V G Q +R+ +++E+
Sbjct: 63 SYLGRQAKRKHEQPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFA 122
Query: 168 GHEV---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYT 222
G++V +H + D+ K RR+ V +NV GC CTYC RG S
Sbjct: 123 GNQVVATEAIHIME----DITKPRRDSQVTAW-VNVIYGCNERCTYCVVPGVRGVEQSRP 177
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGST 276
E++ + + G +EV L ++ AYGRD+ G L + + A G
Sbjct: 178 PEAIRAEMVQLGQQGFREVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYAVHDVPGIE 237
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
LR ++P + E L + L P V H+P QSG + VL AM R YT +R ++
Sbjct: 238 RLRFATSHPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNDVLKAMARGYTQEKYRRII 295
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
D + + +P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRP
Sbjct: 296 DLVRQYMPDAAISADAIVGFPGETEEQFQNTLELVADIGFDQLNTAAYSPRP 347
>gi|21231765|ref|NP_637682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991239|ref|YP_001903249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. B100]
gi|81305914|sp|Q4UVS2.1|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81793688|sp|Q8P8B5.1|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891032|sp|B0RRW2.1|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 485
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/364 (33%), Positives = 193/364 (53%), Gaps = 41/364 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NTC+++ +Q + + +
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 120 KCKSAK---KPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVE---ETLKG 168
+ K+ K KP++ V GCV +G +K V +V G Q + R+ E++ E+ K
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 169 H------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
E+ R P D P + FV I+ GC C++C + RG S
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGP----SAFVSIME---GCSKYCSFCVVPYTRGEEVSRP 211
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPD 273
E ++ V + A GV+E+ L ++ GAYG D G +L +L+ I A++ D
Sbjct: 212 FEDVLVEVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--D 268
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
G +R ++P LE + + R P + ++LH+PVQ+GSD +LSAM R YT +F
Sbjct: 269 GIGRIRFTTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEF 325
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQF 392
++ + L + P + I++D I GFPGETD DF++T+ LI++ F Q + RPG
Sbjct: 326 KSKIRKLRAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPA 385
Query: 393 LNLD 396
+L+
Sbjct: 386 SDLE 389
>gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis
ATCC 25840]
gi|229890453|sp|A5VTA1.1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840]
Length = 467
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLAVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|428216689|ref|YP_007101154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
gi|427988471|gb|AFY68726.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
Length = 475
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L GY TD++ +AD+ L NTC+++ ++ + + + +
Sbjct: 36 HIVTFGCQMNKADSERMAGVLENIGYRATDDANDADLVLYNTCSIRDNAEQKVYSYLGRQ 95
Query: 122 KSAKKP-----LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 171
K LVVAGCV Q R + EL+ V +G Q ++R+ +++ + G++V
Sbjct: 96 AKRKHSNPGLTLVVAGCVAQQEGEALMRRVPELDLV--MGPQHVNRLDDLLAQVYAGNQV 153
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + D+ K RR+ + +NV GC +CTYC RG S T ++
Sbjct: 154 VAIEEAFIEE-DITKPRRSSTITAW-VNVIYGCNESCTYCIVPSVRGQEQSRTPAAIRAE 211
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--------DGSTMLRIG 281
+ + A G KE+ L ++ AYGRD+ L +G +R
Sbjct: 212 IEALAAQGYKEITLLGQNIDAYGRDLPPGGIGAGIGGKITLTDLLYYVHDVEGIERIRFA 271
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + L I P + H+P QSG + +L M R YT +R ++D + E
Sbjct: 272 TSHPRYFSSRL--IHACAELPKLCEHFHIPFQSGDNELLKDMKRGYTHEKYRRIIDQIRE 329
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++P I+ D I FPGET+ F T+ L++E F V+ + + PRPG
Sbjct: 330 IMPDAAISADAIVAFPGETEAQFENTLRLVEEISFDLVNTAAYSPRPG 377
>gi|350546944|ref|ZP_08916300.1| hypothetical protein GUU_03770 [Mycoplasma iowae 695]
gi|349503497|gb|EGZ31084.1| hypothetical protein GUU_03770 [Mycoplasma iowae 695]
Length = 483
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 175/356 (49%), Gaps = 17/356 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ ++KTFGC N DSE + G L GY TD+ +AD+ L+NTC V+ ++ + I
Sbjct: 46 KKFHIKTFGCQSNVRDSETLMGILEMIGYTHTDSINDADLVLLNTCAVREHAEQKVFADI 105
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVS-IVGVQQIDRVVEVVEETL-- 166
KK + GC+ Q ++ LK + I G I RV+ ++E+ +
Sbjct: 106 GVLDKIKKTNPNFIFGMCGCMAQEESIVNKILKSNSNIDFIFGTHNIHRVLNILEQVIFE 165
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K + + ++ +LP R + + + GC CTYC RG + S + E +
Sbjct: 166 KNLIIEVWSKEGDIIENLPSFRNSNIKAFVNVMYGCDKFCTYCIVPFTRGKIRSRSKEDI 225
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ V+++I +G KEV L ++ +YG D + L + ++ ++ G LR +NP
Sbjct: 226 LDEVKSLIKEGYKEVTLIGQNVNSYGIDFKNDKKYLFHDLLKDVAETGIKRLRFTTSNP- 284
Query: 287 FILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
KEI +V++ HP + +H+P+QSG + +L MNR + D+ +V+ + E +P
Sbjct: 285 --WNFTKEIVDVMKSHPNIMPHIHLPIQSGDELILKRMNRPMRIEDYIGLVNYIKESIPN 342
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL-DSTEL 400
I TDII GFP E+ E F +T++L +F + R G L DS EL
Sbjct: 343 CSITTDIIVGFPNESREQFEKTLSLYNTIQFDNAFTFVYSKRDGTVAAQLPDSIEL 398
>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 523
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 173/341 (50%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKQLKQDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHEAYMSKE 201
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KEV L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEVTLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ET+E F +T++L +E +F + + PR G
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREG 419
>gi|389879388|ref|YP_006372953.1| RNA modification protein [Tistrella mobilis KA081020-065]
gi|388530172|gb|AFK55369.1| RNA modification protein [Tistrella mobilis KA081020-065]
Length = 467
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 182/367 (49%), Gaps = 43/367 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T+ +Y+KT+GC N DSE M+ L+A G+A T+ +E+AD+ ++NTC ++ + + +
Sbjct: 2 TKKLYIKTYGCQMNVYDSERMSDVLAAQGFAPTEVAEDADLVILNTCHIREKAAEKVYSD 61
Query: 118 IAKCKSAKKP----LVVAGCVPQGSRDLKELEGVSI----------VGVQQIDRVVEVVE 163
+ + ++A P + V GCV Q EGV I G Q R+ ++VE
Sbjct: 62 LGRLRAAGGPAGRLIAVGGCVAQA-------EGVEIRTRAPFVDIVFGPQTYHRLADMVE 114
Query: 164 ETLKGHEVRLLHRKKLPALD-LPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSY 221
+G V D LP + + + GC CT+C + RG S
Sbjct: 115 RATRGQAVVETDFPTEAKFDHLPTATGQRGHTAFVAVQEGCDKFCTFCVVPYTRGAEYSR 174
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAY---------GRDIGVNLPILLNAIVAELPP 272
+++ +R + A+GV+EV L ++ AY G L L AI AE+
Sbjct: 175 PAGAILDEIRALAANGVREVMLLGQNVNAYHGAAPEGARGPAGDWTLARLARAI-AEI-- 231
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRH---PCVYSFLHVPVQSGSDAVLSAMNREYTL 329
DG +R ++P + L +L H P + +LH+PVQSGSD +L AMNR++T
Sbjct: 232 DGIARIRYTTSHPRDMGGDL-----ILAHRDLPQLMPYLHLPVQSGSDRILKAMNRKHTA 286
Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D+ +VD L E+ P M ++ D I GFPGE+D DF T+ L++ + + ++ PRPG
Sbjct: 287 EDYLRIVDRLREVRPDMAMSGDFIVGFPGESDADFEATMRLVERVDYALAYSFKYSPRPG 346
Query: 390 IQFLNLD 396
+L+
Sbjct: 347 TPAADLE 353
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 189/352 (53%), Gaps = 28/352 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+ T+GC N+SDSE +AG L GY ++ EEADI L+NTC+V+ ++ + + +
Sbjct: 5 YIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLGEL 64
Query: 122 KSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ KK + + GC+ Q ++ +++ V V G + + +++E +L G + ++
Sbjct: 65 RKLKKRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILE-SLDGKK-KV 122
Query: 174 LHRKKLPA---LDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + +P+ +D ++R NKF +PI GC CTYC + RG S E ++
Sbjct: 123 VLAEDIPSPQDVDFRVIKRENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIRE 182
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
V + + GV EV L ++ +YG+D+G N +A+L + + RI F+
Sbjct: 183 VEYLASQGVVEVTLLGQNVDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLT 233
Query: 290 EHLKEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
H +++++ V HP V H+P+Q+GSD +L M R YT S+++ +++ + +P
Sbjct: 234 SHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKIRAEIP 293
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+TDII GFPGE +EDF T ++E KF V+++ + RPG N +
Sbjct: 294 KASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAANYE 345
>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
Length = 514
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINTC ++ +++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISNIDIPRVRFTTSHPWD 307
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDG 407
>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens FZB42]
gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|416351837|ref|ZP_11681209.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum C str.
Stockholm]
gi|338195908|gb|EGO88139.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum C str.
Stockholm]
Length = 369
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 176/337 (52%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + E AD+++INTCTV + S +I++ K
Sbjct: 7 TLGCRVNVYESEAMAEKFLKSGYEVVQFDEVADVYVINTCTVTNMSDKKSRQMISRAKRK 66
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
++A GC Q + D +KE+ V ++ G + +V V EE EV +L
Sbjct: 67 NPESIIAAVGCYTQIAPDKVKEIGDVDVILGTRNKGDIVYWVNRAKEEDKTIVEVNDVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC ARG + S E+++ V+ +
Sbjct: 127 NKKFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKDPETIIDEVKKLSE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KE 294
G KE+ LS D +YG D+ + LL + A +G +RIG P F E + KE
Sbjct: 186 HGFKEIILSGIDIASYGVDLEGDWN-LLRVLKAIDEIEGINRVRIGSIGPEFFNEDIIKE 244
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I L+ C + H+ +QSG ++ L MNR+YT +F+ +V L + V + I TDII
Sbjct: 245 IGS-LKKLCPH--FHLSLQSGCNSTLKRMNRKYTTEEFKNIVVLLRKYVKDISITTDIIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET E+F +T N +KE K ++HI ++ PR G +
Sbjct: 302 GFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTR 338
>gi|304316819|ref|YP_003851964.1| MiaB family RNA modification protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 471
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 179/345 (51%), Gaps = 25/345 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NTC V+ ++ + +++
Sbjct: 36 HIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQL 95
Query: 122 KSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
K K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 96 KELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDTT 155
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 156 IIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILNE 215
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGV-----NLPILLNAIVAELPPDGSTMLRIGMTN 284
++++ +G KE+ L ++ +YG D+ + +L ++N I DG +R ++
Sbjct: 216 IKSLANEGFKEITLLGQNVNSYGNDLPIKIDFADLLYMINDI------DGIERIRFMTSH 269
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +P
Sbjct: 270 PKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNIP 327
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+ I TDII GFPGETD+DF T++L+KE ++ + + R G
Sbjct: 328 GIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKG 372
>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
Length = 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|333923603|ref|YP_004497183.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749164|gb|AEF94271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 459
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 183/353 (51%), Gaps = 25/353 (7%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVE 163
+ L+ + + K KP + VAGC+ Q K++ V I+ G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
+R ++P + L +I C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDIIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R G
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSG 357
>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
acidovorans SPH-1]
gi|333916610|ref|YP_004490342.1| MiaB family RNA modification protein [Delftia sp. Cs1-4]
gi|229890511|sp|A9BUQ1.1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
SPH-1]
gi|333746810|gb|AEF91987.1| RNA modification enzyme, MiaB family [Delftia sp. Cs1-4]
Length = 442
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 180/351 (51%), Gaps = 17/351 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ H+
Sbjct: 62 DLGRYKHLKERGVLIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHK 121
Query: 171 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLI 181
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 284
V + GVKEV L ++ AY +G I LL V+E+P G +R ++
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSH 239
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P L I R P + S LH+PVQ GSD +L AM R YT ++++ + L + P
Sbjct: 240 PNEFTPRL--IEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRP 297
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
M +++D I GFPGET+EDF + + LI + +F F PRPG NL
Sbjct: 298 EMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANL 348
>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
Length = 514
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 172/341 (50%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++TFGC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q ++ LK + V ++ G I R+ +++E E
Sbjct: 131 LKHLKKERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D +L L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS VL M R+YT + +V + +P
Sbjct: 310 DDHLIEV--LAKGGNLLEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIRAAIPNATF 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ETDE F +T++L KE + + + PR G
Sbjct: 368 TTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREG 408
>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
Length = 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R ++A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLVANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi ATCC 49188]
gi|229890580|sp|A6WWX6.1|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC
49188]
Length = 462
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 37/368 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ + +
Sbjct: 15 PNVRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 116 TLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 159
+ + + + K + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 160 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 268
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ +++ + E+ P + ++ D I GFPGETD+DF T+ L+++ + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDLALSGDFIVGFPGETDQDFEDTMRLVRDVNYAQAYSFKYSPRP 364
Query: 389 GIQFLNLD 396
G +LD
Sbjct: 365 GTPGADLD 372
>gi|451817753|ref|YP_007453954.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783732|gb|AGF54700.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 467
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 174/349 (49%), Gaps = 15/349 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
G + T GC N ++E MA + GY +TD AD+++INTC+V + S
Sbjct: 32 GKRFVAFATLGCRVNHYETEAMAEKFIQEGYEVTDFENFADVYVINTCSVTNMSDKKSRQ 91
Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
+I++ + + ++A GC Q ++ ++EGV +V G + +V + + + +
Sbjct: 92 IISRARRRNQEAIIAAVGCYSQVAPEEVAKIEGVDVVLGTRNKGDIVYYINKAKDEQKSQ 151
Query: 173 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
L L K+ L++ + + +K L I GC C YC + RG S E ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCVIPYTRGATCSKDPEKVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 286
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ +G +RIG P
Sbjct: 211 NEIKNLSQHGFKEIILSGIHTASYGVDLDGNITLI--TLLEEIEKLEGIERVRIGSIEPS 268
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
F + + + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 269 FFTDEVIGKIKDMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNKIRENLKDA 326
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
I TD+I GFPGETDE+FN+T +K K + HI +F PR G + ++
Sbjct: 327 SITTDVIVGFPGETDEEFNETYEFLKRLKLTKTHIFKFSPRKGTKAADM 375
>gi|399117018|emb|CCG19831.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
asinigenitalis 14/45]
Length = 469
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 182/347 (52%), Gaps = 25/347 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ KK + V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGTVGEQGEIADFAMLLELVHEIPGVERIR-----Y 265
Query: 288 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV L ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRNLYKV 325
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + +++D I GFPGET+EDF T+ LIK+ + RPG
Sbjct: 326 RPDLTLSSDFIVGFPGETEEDFEATLKLIKDLNIDTSFSFIYSRRPG 372
>gi|348590646|ref|YP_004875108.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
gi|347974550|gb|AEP37085.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
Length = 469
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/347 (34%), Positives = 182/347 (52%), Gaps = 25/347 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NTC+++ +Q + + +
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ KK + V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGSVGEQGEIADFAMLLELIHEIPGVERIR-----Y 265
Query: 288 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV L ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRNLYKV 325
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + +++D I GFPGET+EDF T+ LIK+ + RPG
Sbjct: 326 RPDLTLSSDFIVGFPGETEEDFEATLKLIKDLNIDTSFSFIYSRRPG 372
>gi|294631817|ref|ZP_06710377.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
gi|292835150|gb|EFF93499.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces sp. e14]
Length = 500
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 181/369 (49%), Gaps = 15/369 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMD 115
T + ++T+GC N DSE +AG L GY A + +AD+ + NTC V+ + + +
Sbjct: 56 TRSYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVRENADNRLY 115
Query: 116 TLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLK 167
+ K AK+P + V GC+ Q RD +K+ V +V G I ++ ++E
Sbjct: 116 GNLGHLAPKKAKRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARV 175
Query: 168 GHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 176 QEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGD 235
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
++ V ++ +GV E+ L ++ AYG DIG + + A +G +R +P
Sbjct: 236 ILAEVEALVGEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNVEGLERVRFTSPHP 294
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + IA + P V LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 295 RDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIPH 352
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLF 405
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +D ++
Sbjct: 353 AAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDDQVPKEVVQ 412
Query: 406 SNYKFTVML 414
+ Y+ V L
Sbjct: 413 ARYERLVAL 421
>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|423377832|ref|ZP_17355116.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
gi|423547613|ref|ZP_17523971.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|423622602|ref|ZP_17598380.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|401179334|gb|EJQ86507.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|401260722|gb|EJR66890.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|401636098|gb|EJS53852.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|423440940|ref|ZP_17417846.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|423448892|ref|ZP_17425771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|423464005|ref|ZP_17440773.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|423533368|ref|ZP_17509786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
gi|423541377|ref|ZP_17517768.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|401129486|gb|EJQ37169.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|401172565|gb|EJQ79786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|402417601|gb|EJV49901.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|402420272|gb|EJV52543.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|402463587|gb|EJV95287.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|160945078|ref|ZP_02092304.1| hypothetical protein FAEPRAM212_02597 [Faecalibacterium prausnitzii
M21/2]
gi|158442809|gb|EDP19814.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii M21/2]
Length = 463
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 179/344 (52%), Gaps = 19/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ ++GC N +D E + G L GY L D E+AD+ L NTC V+ ++ + +
Sbjct: 30 FVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFGNVGAL 89
Query: 122 K--SAKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K KKP ++ GC+ +++L + GV ID + +++ + L+ H+
Sbjct: 90 KGLKEKKPGLIIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKR 149
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
LL + P + ++P R ++F LPI GC CTYC + RG S ++
Sbjct: 150 VLLDPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAE 209
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R+++ G KE+ L ++ +YG+ + ++ LLN ++ +P G +R MT+ P
Sbjct: 210 FRSLVEAGYKEITLLGQNVNSYGKGLEEQIDFSDLLN-LLCTVP--GDYHIRF-MTSHPK 265
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
H K I + P + LH+PVQ GSD +L MNR YT+ + ++D + VPG+
Sbjct: 266 DASH-KLIDTIAAQPKLCKHLHLPVQCGSDRLLQQMNRHYTVEQYLELIDYARKTVPGIT 324
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
++DII GFPGET+EDF +T+ L+++ + Q+ + R G +
Sbjct: 325 FSSDIIVGFPGETEEDFVKTLELVRKVGYMQLFTFIYSKRTGTK 368
>gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33]
gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33]
Length = 467
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEVEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|220932005|ref|YP_002508913.1| MiaB family RNA modification protein [Halothermothrix orenii H 168]
gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 175/342 (51%), Gaps = 19/342 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ T+GC N DSE +AG L GY T+N EEADI ++NTC V+ ++ + +
Sbjct: 7 FILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRVGDF 66
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE--ETLKGH 169
K K+ + V GC+ Q + ++L I G I + E+++ + +G
Sbjct: 67 KRLKEKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKRIKEERGR 126
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + ++++ D+P R + F + I GC CTYC + RG S ++
Sbjct: 127 IIEVWNQEEGLIPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRERSRPAADIISE 186
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R + ++GVKE+ L ++ +YG+D+ ++ LL + +G +R ++P
Sbjct: 187 ARKLASEGVKEITLLGQNVNSYGKDLKEDIDFADLLKRLNR---VEGIKRIRYMTSHPRD 243
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + +I + C + H+PVQSGS +L MNR YT +++ ++ + +P
Sbjct: 244 FSDKMIKIIKECDKVCEH--FHLPVQSGSTRILKKMNRGYTQAEYLNLIKKIKSQIPDYS 301
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I TDII GFPGET+EDF +T+ +I+E +F + ++ PR G
Sbjct: 302 ITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKG 343
>gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
1330]
gi|161620062|ref|YP_001593949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella canis
ATCC 23365]
gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94]
gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99]
gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1]
gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340791734|ref|YP_004757199.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|376275261|ref|YP_005115700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
gi|376281796|ref|YP_005155802.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|384225788|ref|YP_005616952.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|81751814|sp|Q8FXU4.1|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890452|sp|A9M9Y3.1|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330]
gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365]
gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94]
gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99]
gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1]
gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340560193|gb|AEK55431.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|343383968|gb|AEM19460.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|358259395|gb|AEU07130.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|363403828|gb|AEW14123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
Length = 467
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|410995108|gb|AFV96573.1| hypothetical protein B649_01295 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 432
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 174/343 (50%), Gaps = 20/343 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKS-PSQSAMD 115
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINTC+V+ P
Sbjct: 2 SKKLFIETLGCAMNTRDSEHMIAELNAHEGYELTDDASAADLILINTCSVREKPVHKLFS 61
Query: 116 TL--IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K A + V GC G +K V+ V G + + ++ +V+ K E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-KAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + A R + + + I++GC CT+C RG S + +V
Sbjct: 121 IEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEA 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 285
R + G KEV+L ++ YGR + +N LL + A + RI T+P
Sbjct: 179 RKAVDSGAKEVFLLGQNVNNYGRRLSGGNEKINFTELLRRVSA-----VEGLERIRFTSP 233
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + I E R+P + +H+P+QSGS +L AM R YT F L ELVP
Sbjct: 234 HPLHMDDEFIEEFARNPKICKSMHMPLQSGSTEILKAMKRGYTKDWFLNRARKLRELVPN 293
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ I+TDII FPGE+DEDF +T+ ++ + +F Q+ ++ PRP
Sbjct: 294 VSISTDIIVAFPGESDEDFEETMEVLNQVRFEQLFSFKYSPRP 336
>gi|407706837|ref|YP_006830422.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
MC28]
gi|407384522|gb|AFU15023.1| RNA modification enzyme, MiaB family [Bacillus thuringiensis MC28]
Length = 450
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus amyloliquefaciens DSM 7]
gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
Length = 509
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
Length = 454
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVG--GLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513]
gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513]
Length = 467
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|428300349|ref|YP_007138655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
gi|428236893|gb|AFZ02683.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
Length = 454
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 180/346 (52%), Gaps = 26/346 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ EA++ L NTC+++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEWSEDPHEANLVLFNTCSIRDNAEHKVYSYLGRL 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K LV+AGCV Q G L+ + + +V G Q +R+ +++++ G++V +
Sbjct: 69 ARRKHDEPDLTLVMAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLQQVFDGNQV-V 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 128 ATEAVYIMEDITKPRRDSSVTSW-VNVIYGCNERCTYCVVPGVRGVEQSRTPEAIRAEME 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G NL L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + VL M+R YT +R ++D + E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIREY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+P I+ D I GFPGET+ F T+ L+ + F V+ + + PRP
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDLVNTAAYSPRP 347
>gi|423549948|ref|ZP_17526275.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
gi|401189564|gb|EJQ96614.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 179/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKNYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|423669894|ref|ZP_17644923.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|423673900|ref|ZP_17648839.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
gi|401299021|gb|EJS04621.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|401310266|gb|EJS15591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|444352574|ref|YP_007388718.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
gi|443903404|emb|CCG31178.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
Length = 474
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 183/348 (52%), Gaps = 22/348 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KKP V V GCV +G + V I+ G Q + R+ E+++
Sbjct: 62 QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIDAVRNN 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H+ V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ + + A GV+EV L ++ A+ + N LL + A DG +R
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGNFADLLRLVAA---IDGIDRIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P +E +I EV R P + SFLH+PVQ+GSD VL+ M R +T+ +++ ++ L E
Sbjct: 239 SHP---IEFTDDIIEVYRDTPELVSFLHLPVQAGSDRVLNLMGRTHTVLEYKAIIRKLRE 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P +QI++D I GFPGET EDF +T+ LI E F + F RPG
Sbjct: 296 ARPDIQISSDFIVGFPGETTEDFEKTMKLIAEVNFDVSYSFIFSARPG 343
>gi|383753868|ref|YP_005432771.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365920|dbj|BAL82748.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 446
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 178/350 (50%), Gaps = 19/350 (5%)
Query: 55 IPGTETIYMK--TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
I G Y+K +GC N +D+E MAGQL+A GY T++++ AD+ +INTC V+ ++
Sbjct: 4 IDGKAHRYVKFLVYGCQMNVADAERMAGQLAAIGYERTEDTDIADLLIINTCAVRETAED 63
Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 164
+ I + K K+ + GC+ Q D +K + V G Q+ + +VV+E
Sbjct: 64 KVYGKIGEIKKLKRENPQLIFGITGCMAQKESDKLIKRAPHIDFVLGTGQVHELTKVVQE 123
Query: 165 TL--KGHEVRL-LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+GH V L K PA+ P R +PI GC CTYC + RG
Sbjct: 124 IQQERGHVVNTALDAKVAPAIAEGSPIAREGSLSAWVPIMYGCNNFCTYCIVPYVRGRER 183
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 279
S E +V V +A G KEV L ++ +YG+D + L +V ++ +G +R
Sbjct: 184 SRRPEDVVKEVEQAVAQGYKEVTLLGQNVNSYGKDHKLATFAELLKMVDKV--EGIKRVR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P + + + + H C + +H+PVQ GS+ +L AMNR YT+ +R +V +
Sbjct: 242 FMTSHPKDLSDEVIDAIAEGEHLCEH--IHLPVQYGSNHLLKAMNRVYTVESYRELVKKI 299
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + TD+I GFPGET++DF Q ++ +KE ++ + + R G
Sbjct: 300 RAKLPHASLTTDLIVGFPGETEDDFAQMLDFLKEIRYDSAYTFIYSKRSG 349
>gi|41408944|ref|NP_961780.1| hypothetical protein MAP2846c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|81413559|sp|Q73W15.1|MIAB_MYCPA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|41397303|gb|AAS05163.1| hypothetical protein MAP_2846c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 517
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 188/391 (48%), Gaps = 26/391 (6%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLIN 102
H T +++ + G T ++T+GC N DSE +AG L A GY + +E AD+ + N
Sbjct: 14 HGPVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFN 73
Query: 103 TCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQ 154
TC V+ + + + ++ K+ + V GC+ Q R+ L+ V +V G
Sbjct: 74 TCAVRENADNKLYGNLSHLAPRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHN 133
Query: 155 IDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
I + ++E K +V + + LP R + + + I+VGC +CT+C
Sbjct: 134 IGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVP 193
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILL 263
RG + + ++ VR+++ADGV EV L ++ AYG RD G LL
Sbjct: 194 SLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLL 252
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
A E+ DG +R +P + + I + + P V LH+P+QSGSD VL AM
Sbjct: 253 RA-CGEI--DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAM 307
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
R Y F ++D + +P I TD+I GFPGET+EDF T+++++ +F Q
Sbjct: 308 RRSYRAERFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQ 367
Query: 384 FYPRPGIQFLNLDSTELLSLLFSNYKFTVML 414
+ RPG LD +++ Y+ V L
Sbjct: 368 YSKRPGTPAAELDGQIPKAVVQERYERLVEL 398
>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|423483893|ref|ZP_17460583.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
gi|401141444|gb|EJQ48999.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|78044693|ref|YP_359280.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996808|gb|ABB15707.1| MiaB-like tRNA modifying enzyme [Carboxydothermus hydrogenoformans
Z-2901]
Length = 434
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 173/341 (50%), Gaps = 27/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E + G GY + D S+ ADI++INTCTV S +I K
Sbjct: 8 TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIRKAVQK 67
Query: 125 KKPLVVA--GCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
VVA GC Q + + LK E ++G +R+VE+VE+ L+ R K+
Sbjct: 68 NPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLR-------ERTKIN 120
Query: 181 AL----------DLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
A+ ++P K+ K + I GC C YC +ARG L S +E +V
Sbjct: 121 AVASFEELLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 288
V+ + G E+ L+ TGAYG++ +LP L + + LR+ P F
Sbjct: 181 VKKLCQSGFSEIVLTGIHTGAYGQE-KQDLPKLADLVAELFKIPELKRLRLSSIEPQDFT 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+E L +A P LH+P+QSG D +L AM R+YT ++ +++T+ E +P + +
Sbjct: 240 VELLDVLAN---SPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIAL 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E F T NL+K+ F +H+ ++ PR G
Sbjct: 297 TSDVIVGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAG 337
>gi|423512424|ref|ZP_17488955.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
gi|402449395|gb|EJV81232.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|257439844|ref|ZP_05615599.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii A2-165]
gi|257197753|gb|EEU96037.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Faecalibacterium
prausnitzii A2-165]
Length = 460
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 19/344 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ ++GC N +D E + G L GY L D E+AD+ L NTC V+ ++ + +
Sbjct: 27 FVHSYGCQQNVNDGERIKGVLVDIGYGLCDKPEDADLILFNTCAVREHAEQRVFGNVGAL 86
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 171
K K+ + + GC+ +++L + GV ID + +++ + L+ H+
Sbjct: 87 KGLKEKKRGLMIGLCGCMANQKHVVEKLRKSYPYVDLVFGVDGIDTLPQLIAQKLQKHKR 146
Query: 172 RLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
L+ + P + ++P R ++F LPI GC CTYC + RG S ++
Sbjct: 147 VLMEPAQRPVIVENIPIRRESEFRAWLPIMYGCDNFCTYCIVPYVRGREKSRKPGDILAE 206
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
R ++ G KE+ L ++ +YG+ + V+ LLN + A +P G +R MT+ P
Sbjct: 207 FRGLVEAGYKEITLLGQNVNSYGKGLEEQVDFADLLNLLCA-VP--GDYQIRF-MTSHPK 262
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
H K I + P + LH+PVQ GSD +L MNR YT+ + +++ + VPG+
Sbjct: 263 DASH-KLIDTIAAQPHLCKHLHLPVQCGSDELLKKMNRHYTIGQYMELIEYARKKVPGIT 321
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
++DII GFPGET+EDF T+ L+K+ + Q+ + R G +
Sbjct: 322 FSSDIIVGFPGETEEDFQDTLELVKKVGYMQLFTFIYSKRTGTK 365
>gi|342213682|ref|ZP_08706404.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341597707|gb|EGS40249.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 433
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 171/340 (50%), Gaps = 12/340 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G GY EEA I++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFIKAGYTPVGFDEEAAIYVINTCSVTNMGEKKSRQLI 61
Query: 119 --AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 170
AK ++ + +VV GC Q + + + ++GV++V G +++VE+VE E
Sbjct: 62 RQAKRRNPEAFIVVTGCYAQLAPEVISAIDGVNLVIGTANRNKIVELVENIPSTEEQISI 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L K + I GC C++C + RG L S +E +V
Sbjct: 122 VRNVMEESTFEEMPLFGNEIEKCRAFMKIQEGCNNFCSFCIIPYTRGKLKSRKIEDIVEE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++A G KEV L+ G YG ++ P L + L DG +R G +
Sbjct: 182 AKRLVAYGYKEVVLTGIHLGNYGIELP-ERPTLGRVVRELLTIDGLERIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E L E+ + +P V LH+P+Q+GSD VL +MNR Y L ++ +V L +P + I
Sbjct: 241 EELIEL--MATNPRVCPNLHLPLQAGSDPVLKSMNRHYNLQQYKDLVKYLRSRIPNLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFPGETDE F +T+ +KE F +H + R G
Sbjct: 299 TDIIAGFPGETDELFEETMRTVKEVGFTHIHAFPYSIREG 338
>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|423389373|ref|ZP_17366599.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
gi|423417765|ref|ZP_17394854.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|401106936|gb|EJQ14893.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|401641464|gb|EJS59181.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
Length = 454
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 24/343 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N++DSE MAG L G+ +++ +AD+ L NTCT++ ++ + + + +
Sbjct: 12 TFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKVYSYLGRQAKR 71
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 176
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++ L G++V
Sbjct: 72 KQEEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVLNGNQVVATES 131
Query: 177 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ D+ + RR+ V + I GC CTYC + RG S T E++ + +
Sbjct: 132 VHIME-DITQPRRDSSVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMEELGR 190
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ P L V ++P G LR ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGTTPEGRHLHNFTDLLYYVHDIP--GIERLRFATSHPRY 248
Query: 288 ILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +P
Sbjct: 249 FTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRRYMPDA 305
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+ D I GFPGET+ F T+ L+++ F ++ + + PRPG
Sbjct: 306 SISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPG 348
>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|423368361|ref|ZP_17345793.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|423489494|ref|ZP_17466176.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
gi|423495217|ref|ZP_17471861.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|423497989|ref|ZP_17474606.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|423519010|ref|ZP_17495491.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|423591694|ref|ZP_17567725.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|423598373|ref|ZP_17574373.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|423660845|ref|ZP_17636014.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
KBAB4]
gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|401080960|gb|EJP89241.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|401151310|gb|EJQ58762.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|401160065|gb|EJQ67444.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|401161276|gb|EJQ68643.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|401231827|gb|EJR38329.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|401236643|gb|EJR43100.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|401300886|gb|EJS06475.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|402431730|gb|EJV63794.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|423612521|ref|ZP_17588382.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
gi|401246110|gb|EJR52462.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
Length = 450
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
Length = 451
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 173/341 (50%), Gaps = 18/341 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L GY T++ EA I + NTC+++ ++ + + + K
Sbjct: 10 ITTFGCQMNKADSERMAGILETMGYDFTEDPNEASIIVYNTCSIRDNAEQKVYSYLGKQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + I+G Q +R+ ++++ G+++
Sbjct: 70 KRKHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPVHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 ARQGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L + L P V H+P QSG + VL AM R YT +R +++ + +P
Sbjct: 249 FTERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTHERYRDIINKIRGYMPHAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP
Sbjct: 307 ISADAIVGFPGETEEQFENTLRLVEDIGFDQLNTAAYSPRP 347
>gi|288817802|ref|YP_003432149.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|384128563|ref|YP_005511176.1| MiaB family RNA modification protein [Hydrogenobacter thermophilus
TK-6]
gi|288787201|dbj|BAI68948.1| 2-methylthioadenine synthetase [Hydrogenobacter thermophilus TK-6]
gi|308751400|gb|ADO44883.1| RNA modification enzyme, MiaB family [Hydrogenobacter thermophilus
TK-6]
Length = 433
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 186/340 (54%), Gaps = 19/340 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE + G L GY + +EADI LINTCT++ + + + +
Sbjct: 4 YIKTFGCQMNFNDSERIKGMLQTLGYQEAKDWQEADIILINTCTIREKPDQKVFSHLGEY 63
Query: 122 KSAK----KPLV-VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHE-V 171
K K K L+ V GC+ Q + ++ +V + + ++ E++++ G++ V
Sbjct: 64 KKLKEQNPKALIGVCGCLAQ-RMGFELIQKSPVVDIMFSSFNMHQLPELIQQAQAGYKAV 122
Query: 172 RLLHR---KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+L + D P VR N + + + GC CTYC RG S ++ES++
Sbjct: 123 AILENPPDDEDKLWDYPTVRDNPYCAYVTVMKGCDKNCTYCVVPKTRGRQRSRSLESILK 182
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR +++DGVKEV L ++ A+G+DIG + LL VAE+ DG +R +P +
Sbjct: 183 EVRDLVSDGVKEVHLLGQNVTAWGKDIGKHFSELLYR-VAEI--DGVERIRFTTGHPKDL 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E + + ++ C + +H+P Q+GSD +L M+R YT ++ + L E V G+
Sbjct: 240 DEGIAKAMGEIKKVCEH--IHLPFQAGSDRILKLMDRGYTKEEYLEKISMLKEYVKGITF 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+TD+I GFP ET+EDF +T++++K+ +F QV +F PRP
Sbjct: 298 STDVIVGFPTETEEDFEETLDMLKKVRFEQVFSFKFSPRP 337
>gi|419720520|ref|ZP_14247747.1| ribosomal protein S12 methylthiotransferase RimO
[Lachnoanaerobaculum saburreum F0468]
gi|383303340|gb|EIC94798.1| ribosomal protein S12 methylthiotransferase RimO
[Lachnoanaerobaculum saburreum F0468]
Length = 440
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 173/341 (50%), Gaps = 21/341 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEAD+ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEADVMIINTCGFIQSAKEESINAILEAS 64
Query: 122 KSAK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
K + K L+V GC+ Q +D +KE+ V +++G D++VE VEE L G +
Sbjct: 65 KLKEVGNLKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEEVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ K R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SKKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPLDDLIVQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + G+KE+ L +++T YG DI LP LL + +G +RI P I
Sbjct: 183 KDLATQGIKELILVAQETTLYGVDIYGKKTLPKLLKELA---KIEGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ C Y L +P+Q SD +L M R T D ++ L +P + +
Sbjct: 240 TDELIDVIASEDKVCKY--LDIPIQHASDNILRRMARRTTYDDLVNIIGRLRNNIPDITL 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T II GFPGET ED + + IK+ KF ++ + + G
Sbjct: 298 RTTIIAGFPGETVEDVDTVIEFIKQMKFERLGVFTYSEEEG 338
>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
Length = 459
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 183/353 (51%), Gaps = 25/353 (7%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NTC V+ ++S
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVE 163
+ L+ + + K KP + VAGC+ Q K++ V I+ G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 276
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 336
+R ++P + L ++ C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 337 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R G
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSG 357
>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus cereus biovar anthracis
str. CI]
gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 450
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 179/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|312793464|ref|YP_004026387.1| RNA modification enzyme, miab family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180604|gb|ADQ40774.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 434
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 182/347 (52%), Gaps = 27/347 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKENGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ ++++++E V I+ G + R+V+ V + L+ +KK+
Sbjct: 67 SPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQRIVDYVRQYLED-------KKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A+D + +R F E+ + I GC C+YC +ARG + S +++S+
Sbjct: 120 AID-GEYKREAFEELKISEFNEHSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKSIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V ++ G KE ++ + AYG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVVRLVQKGYKEFVITGINISAYGKDLDGKVT-LIDVIERVNKIEGVKRIRLSSLEPVIM 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ I +L + LH+ +QSGSD +L MNR YT + ++ +VD + E +
Sbjct: 238 NDEF--IERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVDRIREKWEDVAF 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ G + ++
Sbjct: 296 TTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDM 342
>gi|423457441|ref|ZP_17434238.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
gi|401147825|gb|EJQ55318.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
Length = 450
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ +VL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIKVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|322833884|ref|YP_004213911.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
gi|384259064|ref|YP_005402998.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella aquatilis HX2]
gi|321169085|gb|ADW74784.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella sp. Y9602]
gi|380755040|gb|AFE59431.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rahnella aquatilis HX2]
Length = 474
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 187/349 (53%), Gaps = 24/349 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LTDN+EEADI L+NTC+++ +Q + +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVFS 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ K KK + V GCV +G K V IV G Q + R+ E+V ++G
Sbjct: 62 LLGHWKLLKKKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVNH-VRG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + + I GC C++C + RG S +
Sbjct: 121 TKSPVVD-ISFPEIEKFDRLPEPRADGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPCD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIG 281
++ V + A GV+EV L ++ AY D GV L +VA + DG +R
Sbjct: 180 DVLFEVAQLAAQGVREVNLLGQNVNAYRGDAFEGGVCTFAELLRLVAAI--DGIDRIRFT 237
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P +E +I EV + P V SFLH+P+QSGSD +L+ M R +T+ ++++ + L
Sbjct: 238 TSHP---VEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKRPHTVLEYKSTIRKLR 294
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + ++D I GFPGET+EDF +T++LI + + + PRPG
Sbjct: 295 AARPDIHFSSDFIIGFPGETNEDFERTMDLIAQVNYDVSFSFIYSPRPG 343
>gi|331270008|ref|YP_004396500.1| MiaB-like tRNA modifying protein [Clostridium botulinum BKT015925]
gi|329126558|gb|AEB76503.1| MiaB-like tRNA modifying enzyme [Clostridium botulinum BKT015925]
Length = 433
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 174/337 (51%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + E AD++++NTCTV + S +I++ K
Sbjct: 7 TLGCRVNVYESEAMAEKFIKGGYEVVQFDEVADVYVVNTCTVTNMSDKKSRQMISRAKRK 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
V+A GC Q ++E+ V ++ G + +V V EE EV +L
Sbjct: 67 NPESVIAAVGCYTQIAPEKVREIGDVDVILGTRNKGDIVYWVNRAKEEGKTIVEVNDVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC C+YC ARG + S E+++ V+ +
Sbjct: 127 NKQFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPETIIDEVKKLSE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KE 294
G KEV LS D +YG D+ N LL + A +G +RIG P F E + KE
Sbjct: 186 HGFKEVILSGIDISSYGVDLEGNWN-LLKVLKAIDEIEGINRVRIGSIGPEFFDEDIIKE 244
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I L+ C + H+ +QSG ++ L MNR+YT +FR ++ L + V + I TDII
Sbjct: 245 IGS-LKKLCPH--FHLSLQSGCNSTLKRMNRKYTTEEFRDIIVLLRKYVKDISITTDIIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET E+F +T N +KE K ++HI ++ PR G +
Sbjct: 302 GFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTR 338
>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
gi|156868179|gb|EDO61551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium leptum DSM
753]
Length = 459
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 172/341 (50%), Gaps = 20/341 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
++T+GC N SD E + G L G+ T++ EEAD L NTC ++ ++ + + K
Sbjct: 29 VRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGALK 88
Query: 123 SAKK---PLVVA--GCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K+ L++A GC+ + R K VS+V G + ++V ETL G + R
Sbjct: 89 YLKRRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLTGAK-R 147
Query: 173 LLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ R +D +P R +F LP+ GC C+YC + RG S E+++
Sbjct: 148 VFQRGGEDTIDENIPVRRDGRFKAWLPVMYGCDNFCSYCVVPYVRGRERSREPEAVLKEA 207
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +I G K++ L ++ +YG+++ VN LL I +G LR ++P
Sbjct: 208 RQLIEGGYKDITLLGQNVNSYGKNLPEPVNFAKLLKEIS---DMEGDYWLRFMTSHPKDC 264
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ H + LH+P QSG++ VL MNR YT + ++ E +PG+ I
Sbjct: 265 TKELIDVMASSGH--IAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYAREKMPGLSI 322
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET E+F T++LI+E F ++ F PR G
Sbjct: 323 TSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKG 363
>gi|421074954|ref|ZP_15535973.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
gi|392527014|gb|EIW50121.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
Length = 435
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 19/337 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ ++E M G GY + AD+++INTC+V + +I +
Sbjct: 8 TLGCKVNQFETEVMEGLFKQRGYEKVPFDQVADVYVINTCSVTHLGEKKSRQIIRRAIRL 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEET--------LKGHEVR 172
+ + + VAGC Q S ++++ +EGV IVG Q R+V++VE+ + + +
Sbjct: 68 NPEAVVAVAGCYAQISPKEIEAIEGVKVIVGTQDRKRIVDLVEQAAHCMSPVNVVTNIMN 127
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
H + +P + P R L I GC CTYC +ARG L S ++ S++
Sbjct: 128 AEHFEDIPLFEAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLASIIQETEK 183
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+IA G KE+ L+ GAYG D+ + L + + + L G LR+G I + L
Sbjct: 184 LIAAGFKEIVLTGIHLGAYGHDVEDKIT-LADVVRSILSIKGLVRLRLGSLESIEISDEL 242
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
IA + + + S LH+P+Q+G A+L AMNR YTL +++ ++ + V + I+TDI
Sbjct: 243 --IALMKQDDRLCSHLHLPLQAGDAAILKAMNRHYTLDEYQQLITNIRNKVEDIAISTDI 300
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGET E FN + +++ F ++HI + R G
Sbjct: 301 IVGFPGETPEMFNNALTFVEKMNFSRMHIFPYSRRSG 337
>gi|387771045|ref|ZP_10127217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
gi|386902964|gb|EIJ67785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/350 (33%), Positives = 184/350 (52%), Gaps = 26/350 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLESTHGLELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ ++ + G
Sbjct: 62 QLGRWKELKKKNPNLLIGVGGCVASQEGEHIRQRAPFVDIIFGPQTLHRLPAMINQIRGG 121
Query: 169 H----EVRLLHRKKLPALDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+V +K L PK FV I+ GC CTYC + RG S +
Sbjct: 122 QSSVVDVSFPEIEKFDCLPEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPL 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVNLPILLNAIVAELPPDGSTMLRI 280
+ ++ + + A GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGGICSFAELLRLVAAI--DGIDRLRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+NP LE +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L
Sbjct: 237 TTSNP---LEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKL 293
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ P +QI++D I GFPGET+E+F QT+NLI++ F + + RPG
Sbjct: 294 RAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSYSFVYSARPG 343
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 375
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 416
>gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis bv. 1 str. 16M]
gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis ATCC 23457]
gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|384212505|ref|YP_005601589.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|384409604|ref|YP_005598225.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|384446137|ref|YP_005604856.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
gi|81851031|sp|Q8YEA2.1|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M]
gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
ATCC 23457]
gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|349744126|gb|AEQ09669.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
Length = 467
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + K VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIAHLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|428769245|ref|YP_007161035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
gi|428683524|gb|AFZ52991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
Length = 451
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 18/341 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ TFGC N++DSE MAG L G+ T++ +A + + NTCT++ ++ + + + +
Sbjct: 10 ITTFGCQMNKADSERMAGILENMGFEFTEDPNQAKVLVYNTCTIRDNAEQKVYSYLGRQA 69
Query: 123 SAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K LVVAGCV Q G + L+ + + +V G Q +R+ ++E+ G+++
Sbjct: 70 KRKHQEPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDSLLEQVFAGNQIVAT 129
Query: 175 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPIHIYE-DITKPRRESEVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIKAEIEEL 188
Query: 234 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 AKQGYKEITLLGQNIDAYGRDLPGVTETGRHKHTLTDLLYYIHDIEGIERIRFATSHPRY 248
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
E L I P V H+P QSG + +L AM R YT +R ++ + E +P
Sbjct: 249 FTERL--IKACYELPKVCEHFHIPFQSGDNEILKAMKRGYTHERYRDIIAKIREYMPDAA 306
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP
Sbjct: 307 ISADAIVGFPGETEEQFQNTLKLVEDIGFDQLNTAAYSPRP 347
>gi|401679764|ref|ZP_10811688.1| MiaB-like protein [Veillonella sp. ACP1]
gi|400218891|gb|EJO49762.1| MiaB-like protein [Veillonella sp. ACP1]
Length = 431
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 12/340 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 62 RKAKRQNQDAYVIVTGCYAQLDADAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-ERPTLADVVKALLEIPNLHRIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDEDF++T+N +KE F +H + R G
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREG 338
>gi|384154942|ref|YP_005537757.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
gi|345468496|dbj|BAK69947.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
Length = 436
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 191/390 (48%), Gaps = 16/390 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSA 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INTC+V+
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 MDTLIAKCKSAKK---PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 167
+ + I + KK + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGEDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
G V + + + NK+ + I+VGC CTYC RG S E +V
Sbjct: 119 GA-VEVSIDNDESTYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMIV 177
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
+V + G EV L ++ +YGR + + + RI T+P
Sbjct: 178 EQVCKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLERIRFTSPHP 237
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP ++
Sbjct: 238 LHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNLR 297
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSN 407
I TDII FPGET EDF T++++++ KF Q+ ++ PRPG + LNL EL + S
Sbjct: 298 ITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGSQ 357
Query: 408 YKFTVMLISILVKLHYFSLDDQRNVLFGMT 437
LI L++LH L++ L G T
Sbjct: 358 -----RLID-LIELHKRYLEESMPKLIGET 381
>gi|222147351|ref|YP_002548308.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Agrobacterium
vitis S4]
gi|221734341|gb|ACM35304.1| miaB protein [Agrobacterium vitis S4]
Length = 477
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 41/374 (10%)
Query: 43 NHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN 102
H S +P+ + +++KT+GC N DS MA L A GY T++ EEA + L+N
Sbjct: 20 EHASAQQKPAPQ----KKVFIKTYGCQMNVYDSSRMADALVAEGYQSTEDMEEASLVLLN 75
Query: 103 TCTVKSPSQSAMDTLIAKCKSAKK---------PLVVAGCVPQ--GSRDLKELEGVSIV- 150
TC ++ + + + + + + KK + VAGCV Q G ++ GV +V
Sbjct: 76 TCHIREKAADKVYSALGRLREMKKIRAARGEEFMIGVAGCVAQAEGEEIVRREPGVDVVV 135
Query: 151 GVQQIDRVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVG 201
G Q R+ + + G V + H LP +R L + G
Sbjct: 136 GPQTYHRLPQALRRARGGERVVDTDYAVEDKFEH---LPDPTKIAGKRRMITAFLTVQEG 192
Query: 202 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDI 255
C CT+C + RG S + L+G + ++ GV+E+ L ++ A+ GR++
Sbjct: 193 CDKFCTFCVVPYTRGSEVSRPLAQLLGEAQRLVESGVREITLLGQNVNAWHGKGPDGREM 252
Query: 256 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 315
G L LL + AE+P G LR ++P + E L E LR + +LH+PVQSG
Sbjct: 253 G--LGDLLYKL-AEIP--GLARLRYTTSHPRDMDERLIEAHRDLR--MLMPYLHLPVQSG 305
Query: 316 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 375
SD +L AMNR + +D+ +VD + E P + I+ D I GFPGETD DF T+ L++
Sbjct: 306 SDRILKAMNRRHKAADYIALVDRIREARPDIAISGDFIVGFPGETDADFEDTMKLVERIG 365
Query: 376 FPQVHISQFYPRPG 389
+ Q ++ PRPG
Sbjct: 366 YAQAFSFKYSPRPG 379
>gi|331001874|ref|ZP_08325395.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412197|gb|EGG91591.1| MiaB-like tRNA modifying enzyme YliG [Lachnospiraceae oral taxon
107 str. F0167]
Length = 440
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 175/341 (51%), Gaps = 21/341 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKC 121
M + GC N DSE M G ++ G+ TD EEA++ +INTC ++S + +++ ++
Sbjct: 5 MVSLGCDKNTVDSEMMLGLMNEKGFEYTDIDEEAEVMIINTCGFIQSAKEESINAILDAA 64
Query: 122 K----SAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGH-EVRL 173
+ A K L+V GC+ Q +D +KE+ V +++G D++VE VE+ L G +
Sbjct: 65 RLKEDGALKALIVTGCLAQRYKDEIIKEIPEVDALLGTSSFDKIVETVEDVLGGEIKNEF 124
Query: 174 LHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
L +LP++ R+N + L I GC CTYC RG+ SY ++ L+ +
Sbjct: 125 LDLDRLPSI--SNKRKNSTGGYYAYLKIAEGCNKNCTYCIIPSLRGNYRSYPMDDLITQA 182
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+ + A G+KE+ L +++T YG D+ LP LL + G +RI P I
Sbjct: 183 KDLAAQGIKELILVAQETTLYGVDLYGEKTLPKLLKELA---KVSGIEWIRILYCYPEEI 239
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L ++ C Y L +P+Q SD +L M R T D +++ L + +PG+ +
Sbjct: 240 TDELIDVIANEEKVCKY--LDIPIQHASDNILRRMARRTTHDDLVSIIGKLRKNIPGITL 297
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T II GFPGET++D + IKE KF ++ + + G
Sbjct: 298 RTTIISGFPGETEKDLETVIKFIKEMKFERLGVFTYSEEEG 338
>gi|298493062|ref|YP_003723239.1| MiaB family RNA modification protein ['Nostoc azollae' 0708]
gi|298234980|gb|ADI66116.1| RNA modification enzyme, MiaB family ['Nostoc azollae' 0708]
Length = 453
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 182/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + + + +
Sbjct: 8 HITTFGCQMNKADSERMAGILEKMGFEWSEDPNDANVILYNTCTIRENAEQKVYSYLGRQ 67
Query: 122 KSAK--KP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K +P LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 68 AKRKHERPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLESVFDGNQVVA 127
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 128 TEEVHILE-DITQPRRDSQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPTAIRAEME 185
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 186 ELGRKGYKEVTLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 243
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L M+R YT +R ++DT+
Sbjct: 244 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKGMSRGYTHEKYRRIIDTIRRY 300
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGE +E F T+ L+ + F ++ + + PRPG
Sbjct: 301 MPDASISGDAIVGFPGEREEQFENTLKLVDDIGFDLLNTAAYSPRPG 347
>gi|345017406|ref|YP_004819759.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032749|gb|AEM78475.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 455
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 179/346 (51%), Gaps = 14/346 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+T+ T GC NQ ++E MA GY + D +E+AD+++INTCTV +S +S +
Sbjct: 21 KTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEI 80
Query: 117 LIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLL 174
A+ K+ +V AGC Q S + L V I +G + D++VE+VEE + ++ +
Sbjct: 81 RKARKKNPDALVVAAGCYVQVSPEEAFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 140
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + E + I GC CTYC +ARG + S + ++ V
Sbjct: 141 VNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGPVRSRDPKKVLDEV 200
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 201 KRFADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKMIHEIDGIKRIRLSSIEPTFLTE 258
Query: 291 H-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+KEIA + P + HV +QSG D L M R YT ++++V+D L E + + I
Sbjct: 259 EFVKEIANL---PKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLREYIKDVAIT 315
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD++ GFPGET E+F +T ++E F ++H+ ++ R G + N
Sbjct: 316 TDVMVGFPGETGEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNF 361
>gi|395233394|ref|ZP_10411634.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
sp. Ag1]
gi|394732121|gb|EJF31828.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
sp. Ag1]
Length = 474
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 181/354 (51%), Gaps = 34/354 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G+ LTDN+ EAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDSTHGFTLTDNANEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K AK+P V V GCV +G + + V IV G Q + R+ E++ +
Sbjct: 62 LLGRWKHIKAKRPDVIIGVGGCVASQEGKKIRQRAHYVDIVFGPQTLHRLPEMINQVRGT 121
Query: 169 H---------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
E+ R P D P +V I+ GC CTYC + RG
Sbjct: 122 RSPVVDVSFPEIEKFDRLPEPKADGP----TAYVSIME---GCNKYCTYCVVPYTRGEEV 174
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGST 276
S + ++ + + GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 175 SRPCDDILFEIAQLAEQGVREVNLLGQNVNAYRGAAYDGGICSFAELLRLVAAI--DGID 232
Query: 277 MLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
+R ++P +E +I EV R P + SFLH+P+QSG+D VL+ M R +T ++++
Sbjct: 233 RIRFTTSHP---IEFTDDIIEVYRDTPELVSFLHLPIQSGADRVLNMMGRTHTALEYKST 289
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ L P +QI++D I GFPGET +DF QT+ LI + F F RPG
Sbjct: 290 IRKLRAARPDIQISSDFIVGFPGETSQDFEQTMKLIADVNFDTSFSFIFSARPG 343
>gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
Length = 451
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 182/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A + L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNDASLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKQEQADLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVGDGNQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMA 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KE+ L ++ AYGRD+ G + L + + V ++P +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVHDVP--SIERIRFATS 244
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + E L + L P V H+P QSG + +L AM R YT +R ++DT+ + +
Sbjct: 245 HPRYFTERLIRACKEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDTIRDYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ +F Q++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPG 348
>gi|365840341|ref|ZP_09381533.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
gi|364561545|gb|EHM39437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
Length = 448
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 176/338 (52%), Gaps = 20/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N SDSE AGQL GY +T+++E AD+ L+NTC V+ ++ + I + K
Sbjct: 13 TYGCQMNSSDSERYAGQLEELGYTMTEDAELADVILMNTCCVRETAEDKVLGKIGEFKHL 72
Query: 125 KKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE--TLKGHEVRLL 174
K + V GC+ Q R K + +V G I +++++++E +GH +
Sbjct: 73 KARNNDLIIAVTGCMAQEWQERLFKRAPHLDLVIGTHNIHKLIDLIKEREEKRGHALATD 132
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
+ D+P R KF +PI GC CTYC + RG S +E +V VR +
Sbjct: 133 MDGNV-FYDIPTRRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIVEEVRNLA 191
Query: 235 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 291
+G KE+ L ++ +YG D G + LL A V E+ DG +R ++P
Sbjct: 192 DEGYKEITLLGQNVNSYGLDFKDGTDFSALLYA-VEEI--DGIERVRYMTSHPKDMTFAM 248
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ IA+ + V + LH+PVQSGS +L MNR Y+ + +++ + E +P + + TD
Sbjct: 249 VDAIAQCSK---VVTHLHLPVQSGSTELLKKMNRGYSAEHYLELIEYVREKIPDVALTTD 305
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+I GFPGET++ F T+ L+K+ ++ + + PR G
Sbjct: 306 LIVGFPGETEDMFQDTLKLLKKVRYDMAYTFIYSPRTG 343
>gi|186681269|ref|YP_001864465.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc
punctiforme PCC 73102]
gi|229890579|sp|B2IT24.1|MIAB_NOSP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|186463721|gb|ACC79522.1| RNA modification enzyme, MiaB family [Nostoc punctiforme PCC 73102]
Length = 454
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 175/346 (50%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ AD+ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGVLEDMGFEWSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHDQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ K + + GC CTYC + RG S T ++ +
Sbjct: 129 TESVHIIE-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPSAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ P L V ++P G LR ++
Sbjct: 188 LGRQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHNFTDLLYYVHDVP--GIERLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PKVCKHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPG
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIGFDMLNTAAYSPRPG 348
>gi|253682144|ref|ZP_04862941.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|253561856|gb|EES91308.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
Length = 433
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 175/337 (51%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + E AD+++INTCTV + S +I++ K
Sbjct: 7 TLGCRVNVYESEAMAEKFLKSGYEVVQFDEVADVYVINTCTVTNMSDKKSRQMISRAKRK 66
Query: 125 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
++A GC Q + D +KE+ V ++ G + +V V EE EV +L
Sbjct: 67 NPESIIAAVGCYTQIAPDKVKEIGDVDVILGTRNKGDIVYWVNRAKEEDKTIVEVNDVLK 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC ARG + S E ++ V+ +
Sbjct: 127 NKKFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKDPEIIIDEVKKLSE 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL-KE 294
G KE+ LS D +YG D+ + LL + A +G +RIG P F E + KE
Sbjct: 186 HGFKEIILSGIDIASYGVDLEGDWN-LLRVLKAIDEIEGINRVRIGSIGPEFFNEDIIKE 244
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I L+ C + H+ +QSG ++ L MNR+YT +F+ +V L + V + I TDII
Sbjct: 245 IGS-LKKLCPH--FHLSLQSGCNSTLKRMNRKYTTEEFKNIVVLLRKYVKDISITTDIIV 301
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET E+F +T N +KE K ++HI ++ PR G +
Sbjct: 302 GFPGETKEEFEETYNYLKEIKLSKMHIFKYSPRTGTR 338
>gi|404316811|ref|ZP_10964744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi CTS-325]
Length = 462
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 180/368 (48%), Gaps = 37/368 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD 115
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ + +
Sbjct: 15 PNVRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 116 TLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 159
+ + + + K + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 160 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 214
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 268
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ +++ + E+ P + ++ D I GFPGETD+DF T+ L++ + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDLALSGDFIVGFPGETDQDFEDTMQLVRAVNYAQAYSFKYSPRP 364
Query: 389 GIQFLNLD 396
G +LD
Sbjct: 365 GTPGADLD 372
>gi|417003333|ref|ZP_11942396.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478525|gb|EGC81637.1| tRNA methylthiotransferase YqeV [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 431
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 172/335 (51%), Gaps = 13/335 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +SE + A GY + E ADI++INTCTV + S +I++ +
Sbjct: 9 TLGCKVNQYESEAVEEIFEARGYKKKE--ENADIYVINTCTVTNMSDRKSRQMISRARRD 66
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETL--KGHEVRLLHRKK 178
V+A GC Q ++ ++EGV IV G + + VV++ E+ L KG ++L +
Sbjct: 67 NPEAVIAVMGCYSQVKPEEVSQIEGVDIVLGSRNKEEVVDLCEDVLQNKGAIDKVLSLSE 126
Query: 179 LPALDLPKVRRNKFV--EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
++ ++ + + + I GC C+YC +ARG++ S +ES+ + + +
Sbjct: 127 TKTIEDLEISNQEAMTRAYMKIQDGCNMYCSYCLIPYARGNISSRDMESIKNEAKRLAEN 186
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 296
G KE+ L+ +YG+D+ N L++ I DG +R+ P I E
Sbjct: 187 GYKEIVLTGIHVSSYGKDLK-NGTSLIDVIEEVANTDGIERIRLSSMEPRHITREFLERM 245
Query: 297 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 356
+ + C H+ +QSGSD +L AMNR+Y F+ VD + E+ P + TDII GF
Sbjct: 246 KATKKAC--DHFHLSLQSGSDDILKAMNRKYDTKIFKEKVDLIREVFPNAGLTTDIIVGF 303
Query: 357 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
P ETDE+ +T N +K+ KF + H+ ++ R G +
Sbjct: 304 PTETDENHIETKNFVKDIKFAKTHLFKYSKRDGTK 338
>gi|452995323|emb|CCQ93093.1| enzyme for ms(2)i(6)A formation for tRNA modification [Clostridium
ultunense Esp]
Length = 440
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 172/337 (51%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N+ DSE ++ L GY TDN EE+D + NTC V+ ++ + + K
Sbjct: 10 TYGCQMNEHDSEKISWILETMGYKWTDNKEESDFIIYNTCLVRENAELKVYGQLGALKDL 69
Query: 125 KKP-----LVVAGCVPQG--SRD--LKELEGVSIV-GVQQIDRVVEVVEE--TLKGHEVR 172
K+ L V GC+ Q +RD L + + V I+ G I ++ +++ + V
Sbjct: 70 KRKNPDLILAVCGCMMQQEEARDIILSKYKHVDIIFGTGNIHKLPQLISRYHQINRTVVD 129
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
++ + D+ R+ F + I GC CTYC + RG S E+++ +
Sbjct: 130 IVEDNREIVEDIEANRKYSFKAFVNIMYGCNNFCTYCIVPYTRGREKSRKPENIIKEIED 189
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+ G KE+ L ++ +YG+ +G + N + +G +R ++P + + L
Sbjct: 190 LAKKGYKEITLLGQNVNSYGKTLGYDYS-FANLLEDVNKIEGIARIRFMTSHPKDLSDEL 248
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
I + + V LH+PVQSGS+ VL MNR+YT D+ T+++ + VP + I+TDI
Sbjct: 249 --IQSIAKLDKVCEHLHLPVQSGSNKVLKEMNRKYTKGDYLTLIEKIKNAVPDIAISTDI 306
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGET+EDFN+T++LIK+ ++ + R G
Sbjct: 307 IVGFPGETEEDFNETLDLIKKVRYDSAFTFLYSVRKG 343
>gi|187778464|ref|ZP_02994937.1| hypothetical protein CLOSPO_02058 [Clostridium sporogenes ATCC
15579]
gi|187772089|gb|EDU35891.1| tRNA methylthiotransferase YqeV [Clostridium sporogenes ATCC 15579]
Length = 432
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 175/343 (51%), Gaps = 27/343 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV--------GVQQIDRVVEVVEETLKGHEVRL 173
++K + V GC Q ++ ++EGV +V V I+R +E + ++ +V
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV-- 124
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR +
Sbjct: 125 LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRKL 183
Query: 234 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 184 SKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIERIRIGSIDPTFFTEE 240
Query: 292 LKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I
Sbjct: 241 -----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVYNLRTNIEAVSI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
TDII GFPGET+E+FN+T +K+ K ++H+ +F PR +
Sbjct: 296 TTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATR 338
>gi|433654962|ref|YP_007298670.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293151|gb|AGB18973.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 471
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 178/345 (51%), Gaps = 25/345 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NTC V+ ++ + +++
Sbjct: 36 HIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQL 95
Query: 122 KSAK--KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
K K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 96 KELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDTT 155
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 156 IIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILNE 215
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTN 284
++++ +G KE+ L ++ +YG D+ +L ++N I DG +R ++
Sbjct: 216 IKSLANEGFKEITLLGQNVNSYGNDLPTKIDFADLLYMINDI------DGIERIRFMTSH 269
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +P
Sbjct: 270 PKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNIP 327
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+ I TDII GFPGETD+DF T++L+KE ++ + + R G
Sbjct: 328 GIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKG 372
>gi|307243292|ref|ZP_07525459.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
gi|306493310|gb|EFM65296.1| MiaB-like protein [Peptostreptococcus stomatis DSM 17678]
Length = 431
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 191/391 (48%), Gaps = 40/391 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M GY + + AD+++INTCTV S I + K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKNGYENVGSEDYADVYVINTCTVTHMSDRKSRQYIRRVKK- 66
Query: 125 KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
K P + V GC Q S ++ ++E V++V G +V+ V++ +V +
Sbjct: 67 KNPNSIIAVVGCYSQVSPEEILDIEDVNLVMGTNDRRTIVDKVDKIDSNSKVSTVD---- 122
Query: 180 PALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
D+ KVR + +EI + I GC C+YC +ARG + S +S++
Sbjct: 123 ---DIMKVREFEEIEISQTNGKTRAFIKIQDGCDRYCSYCIIPYARGRIRSRDRQSIIEE 179
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 288
+ + A+G KEV L+ +YGRD+ ++ IL ++ ++ +G +R+ P
Sbjct: 180 IEKLAANGYKEVVLTGIHVASYGRDLDEDIDIL--TVIKDVNKVEGIERIRLSSVEPVLF 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E I ++ + + H+ +QSG DA L MNR YT D++ VD L +P + +
Sbjct: 238 TEDF--IDQISKIDKLVPHYHLSLQSGCDATLKRMNRRYTTEDYKRTVDNLRARIPRVSL 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI-----------QFLNLDS 397
TD+I GFPGET+E+F+QT+ +K+ K +H+ ++ PR G Q + S
Sbjct: 296 TTDVIVGFPGETNEEFSQTLAYLKDLKLMHMHVFKYSPRKGTPAAVMEDQVDPQMKQMRS 355
Query: 398 TELLSLLFSNYK-FTVMLISILVKLHYFSLD 427
LL+L N+K F I+ +K+ + +D
Sbjct: 356 DSLLALSTKNFKLFADQFINTDLKVLFEEVD 386
>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
Length = 514
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 177/342 (51%), Gaps = 17/342 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY TD +E+A++ L+NTC ++ +++ + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTEDANVILLNTCAIRENAENKVFGELGH 130
Query: 121 CKSAK--KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K KP + V GC+ Q ++ LK + V ++ G I R+ ++ E E
Sbjct: 131 LKALKLEKPDLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR K + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGKIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + A G +EV L ++ AYG+D+ GVN L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYQEVTLLGQNVNAYGKDLEGVNYG--LGELMDDLRKIDIPRIRFTTSHPRD 308
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + +P +
Sbjct: 309 FDDRLIEV--LAKGGNLMDHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPNVA 366
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ETDE F +T++L +E + + + PR G
Sbjct: 367 LTTDIIVGYPNETDEQFEETMSLYREVGYELAYTFIYSPREG 408
>gi|383191047|ref|YP_005201175.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589305|gb|AEX53035.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 492
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 187/349 (53%), Gaps = 24/349 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LTDN+EEADI L+NTC+++ +Q + +
Sbjct: 20 TKKLHIKTWGCQMNEYDSSKMADLLDSTHGYQLTDNAEEADILLLNTCSIREKAQEKVFS 79
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ K KK + V GCV +G K V IV G Q + R+ E+V ++G
Sbjct: 80 LLGHWKLLKKKNPNIIIGVGGCVASQEGEMLRKRAPCVDIVFGPQTLHRLPEMVNH-VRG 138
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + + I GC C++C + RG S +
Sbjct: 139 TKSPVVD-ISFPEIEKFDRLPEPRADGPTAFVSIMEGCNKYCSFCVVPYTRGEEVSRPCD 197
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
++ V + A GV+EV L ++ AY D GV L +VA + DG +R
Sbjct: 198 DVLFEVAQLAAQGVREVNLLGQNVNAYRGEAFDGGVCTFAELLRLVAAI--DGIDRIRFT 255
Query: 282 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P +E +I EV + P V SFLH+P+QSGSD +L+ M R +T+ ++++ + L
Sbjct: 256 TSHP---VEFTDDIIEVYKDTPEVVSFLHLPIQSGSDRILTMMKRPHTVLEYKSTIRKLR 312
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + ++D I GFPGET+EDF +T++LI + + + PRPG
Sbjct: 313 AARPDIHFSSDFIIGFPGETNEDFERTMDLIAQVNYDVSFSFIYSPRPG 361
>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Clostridium ultunense Esp]
Length = 443
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 18/341 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D EEAD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNFYETEAIWQLFKNKGYTQVDFEEEADVYVINTCTVTNTGDKKSRQMIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 170
+ K+ + V GC Q S + E+ GV IV G Q DR+++ VEE
Sbjct: 63 RAIRKNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAV 122
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ +K+ L +P K L I GC CT+C A+G S ES++ +
Sbjct: 123 ANIMKQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
RT+ A+G +E+ L+ TG YG D+ +LP LL + E+ +G +RI I
Sbjct: 182 RTLAANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIG 238
Query: 290 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E E+ EV R+ P + LH+P+Q+G D +L +M+R+YT + ++ ++ + E +P + I
Sbjct: 239 E---EMIEVFRNNPKMCRHLHIPLQAGDDTILKSMHRKYTTAQYKEKIEKIKEALPHVAI 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGET+E F T + I+E F ++H+ + R G
Sbjct: 296 TTDVIVGFPGETEEMFQNTYDYIREIGFAELHVFPYSKRTG 336
>gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus bv. 1 str. 9-941]
gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis biovar Abortus 2308]
gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus S19]
gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|376272127|ref|YP_005150705.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|423167886|ref|ZP_17154589.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|423169738|ref|ZP_17156413.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|423175272|ref|ZP_17161941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|423177878|ref|ZP_17164523.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|423179171|ref|ZP_17165812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|423182302|ref|ZP_17168939.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|423186756|ref|ZP_17173370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
gi|423190808|ref|ZP_17177416.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|75496027|sp|Q57AB1.1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123740938|sp|Q2YQS8.1|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890451|sp|B2S9E5.1|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown
function UPF0004:tRNA-i(6)A37 modification enzyme
MiaB:Elongator [Brucella melitensis biovar Abortus 2308]
gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19]
gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|363399733|gb|AEW16703.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|374535716|gb|EHR07237.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|374539635|gb|EHR11138.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|374543417|gb|EHR14900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|374549080|gb|EHR20526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|374552115|gb|EHR23544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|374552487|gb|EHR23915.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|374554578|gb|EHR25989.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|374557468|gb|EHR28864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
Length = 467
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NTC ++ +
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 112 SAMDTLIAKCKSAKKPLV---------VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + + VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 160 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 264
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 385 YPRPGIQFLNLD 396
PRPG +LD
Sbjct: 366 SPRPGTPGADLD 377
>gi|52425745|ref|YP_088882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mannheimia
succiniciproducens MBEL55E]
gi|81386786|sp|Q65RW3.1|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
Length = 474
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 185/347 (53%), Gaps = 20/347 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G + V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQIRAG 121
Query: 169 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ L + ++ D LP+ + + I GC CTYC + RG S ++ +
Sbjct: 122 EKAVLDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPLDDV 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + + GV+EV L ++ AY D G+ L +VA + DG LR +
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAI--DGIDRLRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
NP +E +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L +
Sbjct: 240 NP---IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKLRAV 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P +QI++D I GFPGET+E+F QT+NLI++ F + RPG
Sbjct: 297 RPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPG 343
>gi|418576319|ref|ZP_13140465.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325381|gb|EHY92513.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 513
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 15/343 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ETDE F +T+ L E +F + + R G
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDG 406
>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
Length = 456
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 172/344 (50%), Gaps = 22/344 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+ + + T GC NQ +S + GY + D AD+++INTCTV LI
Sbjct: 4 KKVALTTLGCKVNQYESAALEELFRRRGYQVVDFDSPADVYIINTCTVTHLGDRKSRQLI 63
Query: 119 AKCKSAKKPLVVA--GCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 174
+ VVA GC Q + D + +EGV +VG +V++VE KG +V+ +
Sbjct: 64 RRAGRTNPEAVVAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAV 123
Query: 175 HR-------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++LP + + + L I GC C+YC +ARG L S + E+++
Sbjct: 124 EDIARCHDFEELPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVL 179
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
VR ++ G KEV L+ TGAYGR GV+L LL A++A +P G LR+ P
Sbjct: 180 AGVRNLVESGFKEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEP 236
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I L ++ P LH+P+QSG D +L M R Y + FR ++ ++ + +P
Sbjct: 237 NDITPDLLDLMAA--GPPFCRHLHIPLQSGDDYILKRMRRRYDTNYFRRLLASVRDKLPE 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ I TDI+ GFPGE DE F +KE +F +H+ ++ PR G
Sbjct: 295 VGITTDIMVGFPGEEDEHFRNGCTFVKEMQFSALHVFKYSPRRG 338
>gi|256751980|ref|ZP_05492850.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
CCSD1]
gi|320116201|ref|YP_004186360.1| MiaB-like tRNA modifying protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|256749185|gb|EEU62219.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter ethanolicus
CCSD1]
gi|319929292|gb|ADV79977.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 455
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 14/346 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+T+ T GC NQ ++E MA GY + D +E+AD+++INTCTV +S +S +
Sbjct: 21 KTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEI 80
Query: 117 LIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLL 174
A+ K+ +V GC Q S + L V I +G + D++VE+VEE + ++ +
Sbjct: 81 RKARKKNPDALVVAVGCYVQVSPEEAFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 140
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + E + I GC CTYC +ARG + S + ++ V
Sbjct: 141 VNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGPVRSRDPKKVLDEV 200
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 201 KRFADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKMIHEIDGIKRIRLSSIEPTFLTE 258
Query: 291 HL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
KEIA + P + HV +QSG D L M R YT ++++V+D L E + + I
Sbjct: 259 EFVKEIANL---PKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLREYIKDVAIT 315
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD++ GFPGET+E+F +T ++E F ++H+ ++ R G + N
Sbjct: 316 TDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNF 361
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|433637940|ref|YP_007283700.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
gi|433289744|gb|AGB15567.1| MiaB-like tRNA modifying enzyme [Halovivax ruber XH-70]
Length = 449
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 184/368 (50%), Gaps = 21/368 (5%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTET----IYMKTFGCSHNQSDSEYMAGQLSAFGYAL 89
++ +PR ++T P P T +++T+GC+ N+ +S + +L G+
Sbjct: 5 SRTQPRGALCEQAETSGFWPAGPQYPTNMARYHIETYGCTSNRGESRQIERRLRDAGHHR 64
Query: 90 TDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSI 149
D +EAD+ ++NTCTV ++ M + L V GC+ L + E
Sbjct: 65 VDGVDEADVAILNTCTVVEKTERNMLRRAEELADETADLYVTGCMA-----LAQGEEFVN 119
Query: 150 VGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 209
GV + V E + E P LD V ILPI GC+ C+YC
Sbjct: 120 AGVDADVLHWDEVPEAVTNGECPTTTPDAEPILD-------GVVGILPIARGCMSDCSYC 172
Query: 210 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 268
TKHA G + S ++E V + R ++ G KE+ ++ +DTG YG D G L LL I A
Sbjct: 173 ITKHATGKIDSPSIEENVEKARALVHAGAKELRITGQDTGVYGWDDGERKLHRLLERICA 232
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREY 327
+G +RIGM NP + +++A V + +Y FLH PVQSGSD VL M R++
Sbjct: 233 ---IEGDFRVRIGMANPKGVHGIREKLASVFADNEELYDFLHAPVQSGSDDVLGDMRRQH 289
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
+ ++ VV+T + + ++TD I GFP ETD D Q++ L++E + ++++++F R
Sbjct: 290 QVEEYVEVVETFDDALEYWTLSTDFIVGFPTETDHDHAQSMALLRETRPEKINVTRFSKR 349
Query: 388 PGIQFLNL 395
PG ++
Sbjct: 350 PGTDAADM 357
>gi|336253288|ref|YP_004596395.1| MiaB-like tRNA modifying protein [Halopiger xanaduensis SH-6]
gi|335337277|gb|AEH36516.1| MiaB-like tRNA modifying enzyme [Halopiger xanaduensis SH-6]
Length = 417
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 176/345 (51%), Gaps = 24/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC+ N+ +S + +L G+ D E AD+ ++NTCTV ++ M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEVADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 122 KSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
L + GC+ QG +E I G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFRAADIDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 180 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 239
P LD V ILPI GC+ C+YC TK A G + S VE V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSNCSYCITKEATGKIDSPPVEENVEKARALIHAGAK 170
Query: 240 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 299
E+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDTGERKLHELLERICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 300 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 358
H +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 229 AEHDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDDRLDYWTLSTDFIVGFPT 288
Query: 359 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
ET+ D Q++ L++E + ++++++F RPG D+ E+ L
Sbjct: 289 ETEHDHEQSMALLRETRPEKINVTRFSKRPGT-----DAAEMKGL 328
>gi|259909112|ref|YP_002649468.1| tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
gi|224964734|emb|CAX56251.1| Putative tRNA-thiotransferase [Erwinia pyrifoliae Ep1/96]
Length = 480
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 190/357 (53%), Gaps = 24/357 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
P T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 6 PMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKV 65
Query: 115 DTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ ++
Sbjct: 66 FGLLGRWKKLKEANPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMIN-SV 124
Query: 167 KGHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+G + ++ P ++ +P+ R N + I GC CT+C + RG S
Sbjct: 125 RGTKSPVVD-VSFPEIEKFDRMPEPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRP 183
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLR 279
+ ++ V + A GV+EV L ++ AY D G+ L +VA + DG +R
Sbjct: 184 ADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATI--DGIDRIR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
++P +E +I EV R P + SFLH+PVQSG+D +L+ M R +T +++ ++
Sbjct: 242 FTTSHP---IEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 298
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
L+ P +QI++D I GFPGE DF QT+ L+ E F + + RPG +L
Sbjct: 299 LLAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADL 355
>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 471
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P RR + I GC C+YC + RG S E ++ +
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +GVKEV L ++ +YG+D+G + P LL V E+ +G +R ++P + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEI--EGIERIRFVTSHPKDLSD 278
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L L C +H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 279 ELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRG 375
>gi|258645469|ref|ZP_05732938.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
gi|260402822|gb|EEW96369.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
Length = 447
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 24/340 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ DS+ M GY + +E AD+++INTC+V S ++ + +
Sbjct: 17 TLGCKVNQYDSDAMRSLFIRNGYKVAKENENADVYVINTCSVTSIGDRKSRQMVRRIRRE 76
Query: 125 KKPLVVA--GCVPQGSRDL-KELEGVS-IVGVQQIDRVVEVVEETLK--------GHEVR 172
V+A GC Q + D+ ++ V IVG+Q +VE VEE G +
Sbjct: 77 HPGAVIAAAGCYAQLAPDVFVQMGDVDVIVGIQNRSHIVEYVEEAAAEKKTLNAVGDIMA 136
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + L +V+ F++I GC CT+C ARG L S V +R
Sbjct: 137 VTDFENLSVDAEGEVKTRAFIKIQE---GCDNYCTFCIIPFARGKLKSRRQSDAVEEIRR 193
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G +EV L+ G YG+D+ G +L L+ +V PD +LRI + + + E
Sbjct: 194 LVEKGYREVVLTGIHLGNYGKDLHDGTSLSTLVTELVR--IPD---LLRIRLGSIESV-E 247
Query: 291 HLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
E+ ++R P V LH+P+Q+GSD +L MNR Y L++++ ++ L + +PG+ +
Sbjct: 248 LSDELIRIIREEPKVCPHLHLPIQAGSDDILKRMNRHYRLAEYKELIRNLRKEIPGLALT 307
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TD+I GFPGET+E+F +T++ ++E +F +H+ + PR G
Sbjct: 308 TDLIVGFPGETEENFRETLDTLQELQFSAIHVFPYSPRKG 347
>gi|73662777|ref|YP_301558.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|123775346|sp|Q49X85.1|MIAB_STAS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|72495292|dbj|BAE18613.1| putative 2-methylthioadenine synthetase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 513
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 15/343 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +KT+GC N D+E MAG L A GY T++ AD+ LINTC ++ +++ + + I
Sbjct: 67 KTFLIKTYGCQMNAHDTEVMAGILGALGYTPTEDINHADVILINTCAIRENAENKVFSEI 126
Query: 119 AKCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL-- 166
K KK + V GC+ Q ++ LK + V ++ G I R+ E++EE
Sbjct: 127 GNLKHLKKEKPETVIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHRLPEILEEAYLS 186
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
K V + ++ +LPKVR + I GC CTYC RG S E +
Sbjct: 187 KAMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDI 246
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR + G KE+ L ++ AYG+DI L L ++ ++ +R ++P
Sbjct: 247 IDEVRDLARQGYKEITLLGQNVNAYGKDID-GLAYGLGDLLEDISKIDIPRVRFTTSHPW 305
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 306 DFTDRMIEV--IANGGNIVPHVHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTHIPNV 363
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ETDE F +T+ L E +F + + R G
Sbjct: 364 ALTTDIIVGYPNETDEQFEETLTLYDEVEFEHAYTYIYSQRDG 406
>gi|401565221|ref|ZP_10806071.1| MiaB-like protein [Selenomonas sp. FOBRC6]
gi|400188062|gb|EJO22241.1| MiaB-like protein [Selenomonas sp. FOBRC6]
Length = 430
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 170/341 (49%), Gaps = 26/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M G A GY + E A++++INTC+V S LI +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 125 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 169
+ V GC Q +++ LEGV +V G + R+V+ VEE L+
Sbjct: 67 NPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKARARIVDYVEEALRADTGATGTITDIM 126
Query: 170 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ R+ + +P LP R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
++ + G EV L+ GAYG D+ P L +A L LR+G +
Sbjct: 181 MKLLTEAGFYEVVLTGIHLGAYGIDLAAR-PTLADACRTALAEKSLRRLRLGSLES---V 236
Query: 290 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E ++ E++R P + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I
Sbjct: 237 ELSADLLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAHLLEEVRAAVPGVAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+TDII GFPGET+EDF ++ +++ F ++H+ + R G
Sbjct: 297 STDIIVGFPGETEEDFAVGLDFVRQMGFARMHVFPYSARKG 337
>gi|338731013|ref|YP_004660405.1| MiaB-like tRNA modifying protein [Thermotoga thermarum DSM 5069]
gi|335365364|gb|AEH51309.1| MiaB-like tRNA modifying enzyme [Thermotoga thermarum DSM 5069]
Length = 434
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 14/337 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+Y+ GC NQ ++E++ +L G+ + ADI ++NTC V + + +I K
Sbjct: 4 VYVTFLGCKVNQYETEFLIEKLEKNGFVHVTDPSSADICVVNTCMVTNEAARQSRQVIRK 63
Query: 121 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 176
K VV GC + L ++ ++G + +VE + + L+ + LHR
Sbjct: 64 FKRVNPNCVVVAVGCYSHLDGQKLIKIGADLVLGNAEKQNIVEYILDYLQTR--KPLHRV 121
Query: 177 KKLPALDLPKVRR---NKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRT 232
K ++ KV ++ + I GC C+YC +ARG + S + +V V+
Sbjct: 122 TKSDSIVEEKVESFLTDRTRAYVKIEDGCYEMCSYCIVPYARGQKIRSKPIHEVVDEVQK 181
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 292
+++ G KE+ L + G YG+D G +L L+ + ++ +G +R+ N I E L
Sbjct: 182 LVSSGYKEIVLVGVNLGKYGKDTGESLSKLIESCFNQV--NGEFRIRLSSINVQDIGEDL 239
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
E+ + C + LH+P+QSGSD +LS MNR+Y +SDF VV+ E+ TDI
Sbjct: 240 VEVFKRYNRLCPH--LHIPLQSGSDRILSMMNRKYKVSDFLNVVEKFREINTDFSFTTDI 297
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGET DF+QT+ +I++ KF +VH +F PRPG
Sbjct: 298 IVGFPGETLGDFHQTLKVIEQVKFTKVHAFRFSPRPG 334
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 23/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++D I GFPGETD DF +T+ L+ + F ++ PR G
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAG 343
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|395778720|ref|ZP_10459232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae Re6043vi]
gi|423714966|ref|ZP_17689190.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae F9251]
gi|395417928|gb|EJF84265.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae Re6043vi]
gi|395430450|gb|EJF96492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella elizabethae F9251]
Length = 458
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 180/359 (50%), Gaps = 28/359 (7%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP P + +++KT+GC N DS+ M LSA GY T ++AD+ L+NTC ++ +
Sbjct: 10 SPAAP--KKVFIKTYGCQMNVYDSQRMTDSLSAQGYVTTQTPDDADLILVNTCHIREKAA 67
Query: 112 SAMDTLIAKCKSAK------KPLVVA--GCVPQ--GSRDLKELEGVSIV-GVQQIDRVVE 160
+ + + + + + KPL V GCV Q GS L+ V +V G Q R+ E
Sbjct: 68 EKLYSDLGRLRVMRQERTPDKPLTVGVTGCVAQAEGSEILRRAPTVDLVIGPQMYHRLPE 127
Query: 161 VVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211
+E+ +G ++ + H LP + VR+ L + GC CT+C
Sbjct: 128 FLEKAKQGKKIIETDYAVEDKFAH---LPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVV 184
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED-TGAYGRDIGVNLPILLNAIVAEL 270
+ RG S +VE + R +I GVKE+ L ++ G +G+ L + +
Sbjct: 185 PYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQSADGKTWRLGDLLYHLA 244
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
DG LR ++P + + L IA + +LH+PVQSGSD +L AMNR++ S
Sbjct: 245 KLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDMLMPYLHLPVQSGSDRILKAMNRQHKSS 302
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++ + P + + D I GFPGETDEDF +T+ LI++ ++ + ++ PRPG
Sbjct: 303 YYLHIIEKIRAARPDIAFSGDFIVGFPGETDEDFEETIKLIQQVQYSSAYSFKYSPRPG 361
>gi|168179386|ref|ZP_02614050.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
2916]
gi|182669715|gb|EDT81691.1| RNA modification enzyme, MiaB family [Clostridium botulinum NCTC
2916]
Length = 432
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 178/340 (52%), Gaps = 21/340 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LLH 175
++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + R +K L I GC C+YC ARG + S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVKKLSK 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 186 HGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIERIRIGSIDPTFFTEE--- 240
Query: 295 IAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I TD
Sbjct: 241 --EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
II GFPGET+E+FN+T +++ K ++H+ +F PR G +
Sbjct: 299 IIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTR 338
>gi|148241703|ref|YP_001226860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. RCC307]
gi|229891031|sp|A5GRJ8.1|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
Length = 453
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 170/344 (49%), Gaps = 18/344 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++ TFGC N++DSE MAG L + GY ++AD+ L NTCT++ ++ + + +
Sbjct: 8 TYWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLG 67
Query: 120 KCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K+ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 68 RQARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAGQQV 127
Query: 172 RLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ D+ RR+ + + GC CTYC RG S +++ +
Sbjct: 128 VATDDHHILE-DITTARRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQSRLPQAIRLEM 186
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ A G KE+ L ++ AYGRD+ G L + + G +R ++
Sbjct: 187 EGLAASGYKEITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHVHDVKGIERIRFATSH 246
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + E L E L P V HVP QSG D +L AM R YT + +R +V+ + +L+P
Sbjct: 247 PRYFTERLIEACAEL--PKVCEHFHVPFQSGDDELLKAMARGYTTARYRRIVEQIRKLMP 304
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
I+ D I GFPGETD F +T+ L+ E F ++ + + PRP
Sbjct: 305 DAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRP 348
>gi|218905447|ref|YP_002453281.1| MiaB family RNA modification protein [Bacillus cereus AH820]
gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
Length = 450
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/341 (32%), Positives = 179/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ ++AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRXERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|159903894|ref|YP_001551238.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9211]
gi|229890601|sp|A9BBS2.1|MIAB_PROM4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|159889070|gb|ABX09284.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9211]
Length = 467
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 179/361 (49%), Gaps = 22/361 (6%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT 105
S S + P + ++ TFGC N++DSE MAG L GY + +AD+ L NTCT
Sbjct: 9 SSKAQESLQSPTKGSYWITTFGCQMNKADSERMAGILERMGYKQAEEELQADLVLYNTCT 68
Query: 106 VKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDR 157
++ ++ + + + + KK L+VAGCV Q G L+ + + +V G Q +R
Sbjct: 69 IRDNAEQKVYSYLGRQALRKKLFPQLKLIVAGCVAQQEGESLLRRVPELDLVMGPQHANR 128
Query: 158 VVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHA 214
+ ++ + G +V L ++L + DL RR+ + +NV GC CTYC
Sbjct: 129 LETLLNKVETGQQV--LATEELYIIEDLTTARRDSSI-CAWVNVIYGCNERCTYCVVPSV 185
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVA 268
RG S T ++ + + G KEV L ++ AYGRD+ P L + +
Sbjct: 186 RGKEQSRTPPAIKREIENLANTGFKEVTLLGQNIDAYGRDLPGTTPQGRKKNTLTDLLYY 245
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
+G +R ++P + L E L P V H+P QSG D +L+ M R Y
Sbjct: 246 IHDIEGIERIRFATSHPRYFTSRLIEACAEL--PKVCEHFHIPFQSGDDEILNQMRRGYK 303
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ ++ ++ + EL+P I D+I FPGET+E F ++++L++E F Q++ + + PRP
Sbjct: 304 IKTYKKIIGRIRELMPNASITADVIVAFPGETNEQFQRSLSLVEEIGFDQLNTAAYSPRP 363
Query: 389 G 389
Sbjct: 364 N 364
>gi|452124739|ref|ZP_21937323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii F627]
gi|451923969|gb|EMD74110.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii F627]
Length = 471
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 40 LHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEE 95
+H+ L + G+ SP + IY++TFGC N+ DS+ M L G +TDN EE
Sbjct: 1 MHETTLKREGAPAASSPAPTASGKIYIRTFGCQMNEYDSDKMVDVLREDQGLEVTDNPEE 60
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVS 148
AD+ L NTC+V+ +Q + + + + + KK + V GCV +G +K V
Sbjct: 61 ADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPHLVIGVGGCVASQEGEAIVKRAPYVD 120
Query: 149 IV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
+V G Q + R+ E++ +E + ++ +K ++P R + I GC
Sbjct: 121 VVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPARIEGATAFVSIMEGCS 178
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVN 258
C++C + RG S E ++ V + GV+EV L ++ AY G D +
Sbjct: 179 KYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRMEGSDEIAD 238
Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318
+LL V E+P G +R ++P + + + E R P + SFLH+PVQ+GSD
Sbjct: 239 FAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQAGSDR 293
Query: 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378
VLSAM R YT +F++VV L P + +++D I GFPGET+EDF +T+ LI + F
Sbjct: 294 VLSAMKRGYTALEFKSVVRKLRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADVGFDT 353
Query: 379 VHISQFYPRPGIQFLNL 395
+ RPG +L
Sbjct: 354 SFSFVYSRRPGTPAADL 370
>gi|373494777|ref|ZP_09585376.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
gi|371967821|gb|EHO85289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
Length = 438
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 18/344 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ T ++ TFGC N+ DSE + G L+ G++ ++A I +INTC+V+ +
Sbjct: 2 SRTFHITTFGCQMNEHDSEIIDGLLTERGFSSVKERKDASIVIINTCSVRDNADKRFFGT 61
Query: 118 IAKCKSAKKP-----LVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEETLK 167
+ + K K+ + V GC+ Q R + ++ I G I + E++E+
Sbjct: 62 LGQLKKRKESDPSFIVCVCGCMMQQQRVVDIIKAKYPWVDVIFGTNSIHHIPELIEKVSM 121
Query: 168 GHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E V ++ + LP R ++ I GC CTYC + RG S E+
Sbjct: 122 EKEKLVDIIENTEEIVEGLPAKRLFNHKALVNIMFGCNNFCTYCIVPYTRGREKSRRPEA 181
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
++ VR ++ DGVKE+ L ++ +Y D G + LL ++ E+ DG +R +NP
Sbjct: 182 ILAEVRELVEDGVKEIMLLGQNVNSYDGD-GTSFAELL-KMINEI--DGLERIRFMTSNP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ + L E V C LH+P+QSGS+ VL MNR+YT D+ +++ L VP
Sbjct: 238 KDLSDELIEAFTVCDKLC--HNLHLPIQSGSNRVLKRMNRKYTREDYLKLIEKLRIRVPD 295
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ ++TDII GFPGETD+DF +T++L+KE ++ + R G
Sbjct: 296 ITLSTDIIVGFPGETDDDFEETLSLVKEVEYDSAFTFIYSIRKG 339
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 185/343 (53%), Gaps = 25/343 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+KTFGC N +DSE + G L GY D EEAD+ LINTCT++ + + + +
Sbjct: 4 YIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLGEY 63
Query: 122 KS--AKKPLV---VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHEVR 172
K K+P V V GC+ Q + +E +V + I + E++++ G+ R
Sbjct: 64 KKIKEKRPEVIIGVCGCLAQ-RMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQAGY--R 120
Query: 173 LLHRKKLPALD------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
+ + P D VR N + + + GC CTYC RG S ++ES+
Sbjct: 121 AIAILEEPPEDEDRMWEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESI 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+ VR ++ADGVKE+ L ++ A+G+DI ++ LL VAE+P G +R +P
Sbjct: 181 LEEVRWLVADGVKEIHLLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPS 237
Query: 287 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ E + K + ++ P + LH+PVQSGS+ +L M R YT ++ + L E VPG
Sbjct: 238 DMDERIAKAMGDI---PQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREYVPG 294
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
+ +TDII GFP ET+EDF +T++++++ +F QV ++ PRP
Sbjct: 295 ITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRP 337
>gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor bescii DSM 6725]
gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
bescii DSM 6725]
Length = 471
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 172/351 (49%), Gaps = 43/351 (12%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQ-------------------GSRDLKELEGVSIVGVQQIDRVVE 160
KKP + V GC+PQ G++ L + + + + V+E
Sbjct: 102 KEKKPDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVIE 161
Query: 161 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
V E+ + + +P RR + I GC C+YC + RG S
Sbjct: 162 VSED------------EDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERS 209
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 278
E ++ + + +G+KEV L ++ +YG+D+G + P LL V E+ G +
Sbjct: 210 RRPEEIIYEIEQLAQNGIKEVTLLGQNVNSYGKDLGNSITFPKLLEK-VNEIK--GIERI 266
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R ++P + + L L C + +H+PVQSGS +L AMNR YT D+ +V+
Sbjct: 267 RFVTSHPKDLSDELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEK 324
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
L +P + I TDII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 325 LKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRG 375
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 14 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 73
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 74 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 133
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 134 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 193
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 194 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 252
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 253 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 310
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 311 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 351
>gi|256827172|ref|YP_003151131.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
gi|256583315|gb|ACU94449.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cryptobacterium curtum DSM 15641]
Length = 448
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 177/346 (51%), Gaps = 22/346 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T + TFGC N+ DSE +AG L + G + EAD + TC V+ + + +A
Sbjct: 6 TFSITTFGCQMNKHDSERIAGLLESLGSIAVSSPAEADFSIFMTCCVREKADERLMGQVA 65
Query: 120 KCKS---------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
K+ ++ + + GC+ Q G + L +L+ V +V G ++ + +++E ++
Sbjct: 66 TMKNDAPRKGSPFGRRFVAIGGCIGQRDGEKLLTQLDNVDVVFGTHNMETLPQLLESAIE 125
Query: 168 GHEVR--LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
R ++ + +LP+ R + + LPI VGC CT+C + RG S ++
Sbjct: 126 KGSRRAEIIDGRAEFHDELPEDREHPWAAWLPITVGCNNFCTFCIVPYVRGREISRPLDE 185
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 283
+ + R + GVKE+ L ++ +YGRD+ +L+A+ A G +R +
Sbjct: 186 IADQARAYVQQGVKEITLLGQNVNSYGRDLYGSPRFDAVLDAVAA----SGIERIRFATS 241
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
+P + + + E L P + LH+P QSGS+ +L+AMNR YT+ + +++ L +
Sbjct: 242 HPKDLTDGVIERFATL--PNLMPALHLPAQSGSNRILAAMNRRYTIEHYEGLIEKLRVVR 299
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P + ++TDII GFPGET++DF QT L+K + QV + R G
Sbjct: 300 PYIALSTDIIVGFPGETEDDFEQTCELVKRVGYNQVFTFIYSRRDG 345
>gi|167037786|ref|YP_001665364.1| MiaB-like tRNA modifying protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|166856620|gb|ABY95028.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter
pseudethanolicus ATCC 33223]
Length = 467
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 14/346 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+T+ T GC NQ ++E MA GY + D +E+AD+++INTCTV +S +S +
Sbjct: 33 KTVAFYTLGCKVNQYETEVMAELFKKAGYEVVDFNEKADVYVINTCTVTNRSDMKSRQEI 92
Query: 117 LIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLL 174
A+ K+ +V GC Q S + L V I +G + D++VE+VEE + ++ +
Sbjct: 93 RKARKKNPDALVVAVGCYVQVSPEEAFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSV 152
Query: 175 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + E + I GC CTYC +ARG + S + ++ V
Sbjct: 153 VNNIMTQKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGPVRSRDPKKVLDEV 212
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E
Sbjct: 213 KRFADSGYKEIVLTGIHIASYGKDLK-NIG-LLDIIKMIHEIDGIKRIRLSSIEPTFLTE 270
Query: 291 HL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
KEIA + P + HV +QSG D L M R YT ++++V+D L E + + I
Sbjct: 271 EFVKEIANL---PKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLREYIKDVAIT 327
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
TD++ GFPGET+E+F +T ++E F ++H+ ++ R G + N
Sbjct: 328 TDVMVGFPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNF 373
>gi|337749973|ref|YP_004644135.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
KNP414]
gi|386725602|ref|YP_006191928.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
gi|336301162|gb|AEI44265.1| MiaB-like tRNA modifying enzyme YliG [Paenibacillus mucilaginosus
KNP414]
gi|384092727|gb|AFH64163.1| MiaB-like tRNA modifying protein YliG [Paenibacillus mucilaginosus
K02]
Length = 442
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 186/340 (54%), Gaps = 25/340 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
TE + + T GC N DSE M+G + GY+L EEA I ++NTC + + + +++T
Sbjct: 2 TEKVKVVTLGCEKNLVDSEIMSGLVHERGYSLVSEKEEATIIIVNTCGFIDAAKEESVNT 61
Query: 117 LI--AKCKSAK--KPLVVAGCVPQGSRD--LKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
++ A+ K K L+V+GC+ Q ++ LKE+ + IVG + ++++E L+G
Sbjct: 62 ILDMAELKQTANLKALIVSGCLTQRYKEELLKEMPEIDGIVGTGDFHNINQIIDEALQGS 121
Query: 170 EVRLL------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ + + +KLP ++ ++ + I GC ACT+C RG S ++
Sbjct: 122 KPVYVGNPVFNYEQKLPR----RLTTPRYTAYVKIAEGCDNACTFCSIPIMRGKFRSRSM 177
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 281
ES++ V+ + A GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R+
Sbjct: 178 ESVLEEVQQLAAQGVKEISLIAQDSTNYGTDLYDGFKLPELMNR-VSEVP--GIEWVRLH 234
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
P F + L ++ + +P + ++ +P+Q SD++L M R D R ++ + E
Sbjct: 235 YAYPGFFTDELIDV--IADNPKICKYIDMPLQHSSDSILKRMRRPGRQRDARELIKKIRE 292
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
+PG+ + T +I GFPGET+EDF + I++ +F ++ +
Sbjct: 293 RIPGVSLRTSLIVGFPGETEEDFENLKSFIQDVQFDRLGV 332
>gi|313891670|ref|ZP_07825277.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
345-E]
gi|313119948|gb|EFR43133.1| tRNA methylthiotransferase YqeV [Dialister microaerophilus UPII
345-E]
Length = 445
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 179/347 (51%), Gaps = 22/347 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ + T GC NQ DS+ M GY ++ E AD+++INTC+V S
Sbjct: 10 NTKKVSFITLGCKVNQYDSDAMRTLFIHRGYKPVEHPEVADVYIINTCSVTSIGDRKSRQ 69
Query: 117 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHE-- 170
+I K + V+A GC Q +L+++ V IVG Q +++V+ +EE K +
Sbjct: 70 VIRKIRRNNPDAVIAATGCYAQVAPEELEKMGDVDVIVGHQDRNKIVDYIEEAEKSEKTV 129
Query: 171 ------VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ + + L +V+ FV++ GC CT+C +ARG L S E
Sbjct: 130 NAVKDIMSIREYENLTVDPEGEVKARAFVKVQE---GCDNYCTFCIIPYARGRLKSRKQE 186
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGM 282
V ++ ++ G +EV L+ G YG+D+ G +L L++ ++ ++P +R+G
Sbjct: 187 DAVDEIKKLVEKGYREVVLTGIHLGNYGKDLRNGTSLSTLVSELL-KIP--NLLRIRLGS 243
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+ + L I + + C + LH+P+QSGSDAVL +MNR Y L ++ ++ L E
Sbjct: 244 IESVELSDELINIIKNEKRVCHH--LHLPLQSGSDAVLKSMNRHYRLKQYKDLIAMLREK 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P + + TD+I GFPGET+E+F +T+N + E F +H+ F R G
Sbjct: 302 IPNLALTTDLIVGFPGETEENFKETLNTLHELNFSAIHVFPFSKRTG 348
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|49475038|ref|YP_033079.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
henselae str. Houston-1]
gi|81648272|sp|Q6G4V6.1|MIAB_BARHE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49237843|emb|CAF27038.1| hypothetical protein BH02260 [Bartonella henselae str. Houston-1]
Length = 458
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 183/360 (50%), Gaps = 31/360 (8%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPS 110
L+PK +++KT+GC N DS+ M LS+ GY T +AD+ L+NTC ++ +
Sbjct: 12 LAPK-----KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILVNTCHIREKA 66
Query: 111 QSAMDTLIAKCKSAK------KPLVVA--GCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 159
+ + + + + + KPL+V GCV Q GS L+ V +V G Q R+
Sbjct: 67 AEKLYSDLGRLRVMRQERTPDKPLMVGVTGCVAQAEGSEILRRAPIVDLVIGPQMYHRLP 126
Query: 160 EVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
+++E+T +G ++ + H LP + VR+ L + GC CT+C
Sbjct: 127 DLLEQTKQGKKIVATEYAVEDKFAH---LPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCV 183
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED-TGAYGRDIGVNLPILLNAIVAE 269
+ RG S +VE + R +I GVKE+ L ++ G +G+++ L + +
Sbjct: 184 VPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQNVNGKTWRLGDLLYHL 243
Query: 270 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 329
DG LR ++P + + L IA + +LH+PVQSGSD +L AMNR++
Sbjct: 244 AKLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKS 301
Query: 330 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++ + P + + D I GFPGETDEDF +T+ LIK+ ++ + ++ PRPG
Sbjct: 302 IHYLQLIEKIRNARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVEYSSAYSFKYSPRPG 361
>gi|423470532|ref|ZP_17447276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
gi|402436198|gb|EJV68230.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
Length = 450
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens DM4]
Length = 446
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 23/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++D I GFPGETD DF +T+ L+ + F ++ PR G
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAG 343
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|289449396|ref|YP_003475195.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289183943|gb|ADC90368.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 485
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 169/343 (49%), Gaps = 16/343 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N +DSE +AG L GY N E ADI LINTC+V+ + +
Sbjct: 29 KTYFIQTFGCQQNDNDSEKLAGLLQKMGYTPAANRESADIVLINTCSVRENASDRFFGNL 88
Query: 119 AKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 168
K KK + GC+ + +++++ ++ + R E++ L G
Sbjct: 89 GILKPLKKSNPGMLICTCGCMMKQEEVVEKIKRSYPFVDVLLAPSDLYRFPELLWRRLNG 148
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
V + + A +P + K+ + I GC CTYC RG S E ++
Sbjct: 149 TRRVYDITADDVVAEGIPVLHERKYRALCTIMYGCNNYCTYCIVPFTRGRERSRQPEEIL 208
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 286
++ + A G EV L ++ +YGRD+ + L A+ AE G +R ++P
Sbjct: 209 RELQELAASGYTEVMLLGQNVNSYGRDLADKMSFAELLALAAE--HSGLPRIRYMTSHPK 266
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ L ++ +P + +H+P+QSGSDAVL MNR Y ++ + ++VD +P +
Sbjct: 267 DLSPELIDVMAA--YPNIERHIHLPLQSGSDAVLRKMNRHYNIARYMSIVDLAKRKIPDL 324
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I TDII GFPGET+ DF +T+ ++ E + Q+ PRPG
Sbjct: 325 SITTDIIVGFPGETEADFAETLRIVGEVGYDSAFTFQYSPRPG 367
>gi|440682816|ref|YP_007157611.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
gi|428679935|gb|AFZ58701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
Length = 454
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 180/346 (52%), Gaps = 24/346 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ +A++ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNDANVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFDGNQVVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ D+ + RR+ V + I GC CTYC + RG S T ++ +
Sbjct: 129 TEAMHIIE-DITQPRRDSEVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEMEE 187
Query: 233 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 284
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR ++
Sbjct: 188 LGKQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GVERLRFATSH 245
Query: 285 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRRYM 302
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPG
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTMKLVDDIGFDLLNTAAYSPRPG 348
>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
Length = 433
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 175/336 (52%), Gaps = 18/336 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +++ M GY + + E AD+++INTCTV + I + K
Sbjct: 8 TLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFIRRAKRN 67
Query: 125 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL----LHR 176
+ ++A GC Q + +++ +EGV+IV G + +++VE VE ++ L +
Sbjct: 68 NEEAIIAVVGCYAQTAPKEVLAIEGVNIVIGTNERNKIVEAVENCSTEEKISLVDDIMKV 127
Query: 177 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
K+ + + V+ +K L I GC CTYC +ARG + S +V V T++
Sbjct: 128 KQFEEMSIVDVK-DKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPLEIVEEVETLVQK 186
Query: 237 GVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 293
G KEV L+ +YG+D G +L +L + G +R+ P F + L+
Sbjct: 187 GFKEVVLTGIHVASYGKDRSDGTDLIHILKQVNG---AQGLERIRLSSLEPTLFTDDFLR 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E++++ + + H+ +QSG +A L MNR+YT +++ + + ++ P + + TD+I
Sbjct: 244 ELSQLDK---ICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKVYPEVALTTDVI 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
GFPGET+E+FN T IK+ F ++H+ ++ PR G
Sbjct: 301 VGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTG 336
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|345848843|ref|ZP_08801861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
gi|345639713|gb|EGX61202.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
zinciresistens K42]
Length = 495
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 180/372 (48%), Gaps = 19/372 (5%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
G +T ++T+GC N DSE ++G L GY A + +AD+ + NTC V+ + + +
Sbjct: 2 GVKTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGANGDADVVVFNTCAVRENADNKL 61
Query: 115 DTLIA-----KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K + + V GC+ Q RD ++ V +V G I ++ ++E
Sbjct: 62 YGNLGHLAPMKTRRPGMQIAVGGCLAQKDRDTIVRRAPWVDVVFGTHNIGKLPVLLERAR 121
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 122 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRTG 181
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGM 282
++ V ++A+GV E+ L ++ AYG DIG LL A A DG +R
Sbjct: 182 DILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFGKLLRACGA---IDGLERVRFTS 238
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 239 PHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAA 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLS 402
+P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPG ++
Sbjct: 297 IPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMEDQIPKQ 356
Query: 403 LLFSNYKFTVML 414
++ + Y+ V L
Sbjct: 357 VVQARYERLVAL 368
>gi|452128135|ref|ZP_21940714.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii H558]
gi|451926350|gb|EMD76486.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bordetella
holmesii H558]
Length = 471
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 189/377 (50%), Gaps = 28/377 (7%)
Query: 40 LHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEE 95
+H+ L + G+ SP + IY++TFGC N+ DS+ M L G +TDN EE
Sbjct: 1 MHETTLKREGAPAASSPAPTASGKIYIRTFGCQMNEYDSDKMMDVLREDQGLEVTDNPEE 60
Query: 96 ADIWLINTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVP--QGSRDLKELEGVS 148
AD+ L NTC+V+ +Q + + + + + KK + V GCV +G +K V
Sbjct: 61 ADVILFNTCSVREKAQEKVFSDLGRVQHLKKLNPHLVIGVGGCVASQEGEAIVKRAPYVD 120
Query: 149 IV-GVQQIDRVVEVV----EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
+V G Q + R+ E++ +E + ++ +K ++P R + I GC
Sbjct: 121 VVFGPQTLHRLPELIRRRRDEGVSQVDISFPEIEKFD--NMPPARIEGATAFVSIMEGCS 178
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVN 258
C++C + RG S E ++ V + GV+EV L ++ AY G D +
Sbjct: 179 KYCSFCVVPYTRGEEVSRPFEDVLTEVADLADQGVREVTLLGQNVNAYRGRMEGSDEIAD 238
Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318
+LL V E+P G +R ++P + + + E R P + SFLH+PVQ+GSD
Sbjct: 239 FAMLLE-YVHEIP--GIERIRYTTSHPKEMTQRMVEA--YARLPKLVSFLHLPVQAGSDR 293
Query: 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378
VLSAM R YT +F++VV L P + +++D I GFPGET+EDF +T+ LI + F
Sbjct: 294 VLSAMKRGYTALEFKSVVRKLRAARPNLTLSSDFIVGFPGETEEDFQKTMKLIADVGFDT 353
Query: 379 VHISQFYPRPGIQFLNL 395
+ RPG +L
Sbjct: 354 SFSFVYSRRPGTPAADL 370
>gi|331697733|ref|YP_004333972.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Pseudonocardia dioxanivorans CB1190]
gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Pseudonocardia dioxanivorans CB1190]
Length = 490
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 179/374 (47%), Gaps = 27/374 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
T + ++T+GC N DSE MAG L + GY + +++AD+ ++NTC V+ + + +
Sbjct: 2 TRSYTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGN 61
Query: 118 IAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + A +P + V GC+ Q RD + + V +V G + + ++E
Sbjct: 62 LGHLAPRKAARPGMQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHNE 121
Query: 170 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ R+ L LP R + + + I+VGC CT+C RG ++
Sbjct: 122 RAEVEIRESLEVFPSTLPARRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDRRPGDVL 181
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 285
V + ADGV EV L ++ AYG + G LL A D + R+ T+P
Sbjct: 182 AEVSALAADGVLEVTLLGQNVNAYGVEFGDREAFSKLLRAC-----GDVEGLERVRFTSP 236
Query: 286 PFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
H +E IA + P V LH+P+QSGSD VL M R Y S F ++D +
Sbjct: 237 -----HPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVR 291
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTEL 400
+P I+TDII GFPGET+EDF T+++++ +F Q Q+ PRPG L
Sbjct: 292 GSIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLP 351
Query: 401 LSLLFSNYKFTVML 414
+++ Y+ V L
Sbjct: 352 KAVVQERYERLVEL 365
>gi|170758363|ref|YP_001788268.1| RNA modification protein [Clostridium botulinum A3 str. Loch Maree]
gi|169405352|gb|ACA53763.1| RNA modification enzyme, MiaB family [Clostridium botulinum A3 str.
Loch Maree]
Length = 432
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 178/340 (52%), Gaps = 21/340 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LLH 175
++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + R +K L I GC C+YC ARG + S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVQKLSK 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 186 HGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIQRIRIGSIDPTFFTEE--- 240
Query: 295 IAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I TD
Sbjct: 241 --EIMRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
II GFPGET+E+FN+T +++ K ++H+ +F PR G +
Sbjct: 299 IIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTR 338
>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
coelicolor A3(2)]
gi|81344644|sp|O69963.1|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
A3(2)]
Length = 505
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 180/370 (48%), Gaps = 15/370 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
GT T ++T+GC N DSE ++G L GY A +AD+ + NTC V+ + + +
Sbjct: 12 GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71
Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K A +P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ V ++A+GV E+ L ++ AYG DIG + + A DG +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPH 250
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + IA + P LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLL 404
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +++ +++
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368
Query: 405 FSNYKFTVML 414
Y+ V L
Sbjct: 369 QERYERLVAL 378
>gi|303229106|ref|ZP_07315908.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
gi|302516230|gb|EFL58170.1| MiaB-like protein [Veillonella atypica ACS-134-V-Col7a]
Length = 435
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 12/340 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 6 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 66 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDEDF++T+N +KE F +H + R G
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREG 342
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVGFDTAFTFIYSPREG 405
>gi|374605163|ref|ZP_09678102.1| MiaB-like tRNA modifying protein YliG [Paenibacillus dendritiformis
C454]
gi|374389225|gb|EHQ60608.1| MiaB-like tRNA modifying protein YliG [Paenibacillus dendritiformis
C454]
Length = 481
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 184/347 (53%), Gaps = 29/347 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDT 116
TE I + T GC N DSE M+G + +G+ L +N+E+A + ++NTC + + + +++T
Sbjct: 41 TEQIKIVTLGCDKNLVDSEIMSGIMDQYGHELVENAEDATVIIVNTCGFIDAAKEESVNT 100
Query: 117 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 167
++ K + K L+V+GC+ Q ++ + E++G IVG ++ ++V E L+
Sbjct: 101 ILELADLKETARLKALIVSGCLTQRYKEQLLEEMPEIDG--IVGTGDFHKINDIVAEALQ 158
Query: 168 GHE-VRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
G + VR+ + + LP KV ++ + I GC CT+C RG S
Sbjct: 159 GKKPVRVGNPVFNYEQILPR----KVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 214
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 279
+++S++ V+ + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 215 SMKSILAEVKQLADQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEVP--GVEWVR 271
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+ P F E L I + +P V ++ +P+Q D +L M R D R +V +
Sbjct: 272 LHYAYPGFFTEEL--IDTIASNPKVCKYVDMPLQHSEDTILKRMRRPGRQRDSRELVRKI 329
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
+P + + T II GFPGETDEDF + ++E KF ++ + + P
Sbjct: 330 RARIPEVALRTSIIVGFPGETDEDFENLASFVREMKFDRLGVFTYSP 376
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|303232181|ref|ZP_07318884.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
gi|302513287|gb|EFL55326.1| MiaB-like protein [Veillonella atypica ACS-049-V-Sch6]
Length = 431
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 12/340 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 61
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 62 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 121
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V+ +V
Sbjct: 122 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVDDIVNE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 182 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 240
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 241 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 298
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDEDF++T+N +KE F +H + R G
Sbjct: 299 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREG 338
>gi|385799932|ref|YP_005836336.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
DSM 2228]
gi|309389296|gb|ADO77176.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halanaerobium praevalens
DSM 2228]
Length = 443
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 172/341 (50%), Gaps = 23/341 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T+GC N+ DSE +AG L GY TD E ADI L+NTC ++ ++ + + + K
Sbjct: 11 TYGCQMNKHDSERLAGMLEEMGYQPTDKYENADIILLNTCIIRENAELKVFGKLGELKRY 70
Query: 125 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 172
K+ + + GC+ Q + E+ I G I + +++ + K + V
Sbjct: 71 KRENPDLIIGIGGCMMQQDEPVDEVYKKYRHVDLIFGTHNIHHLPDLINKIEKTRDRVVE 130
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ ++ DLP R+++ + I GC CTYC + RG S + S+V
Sbjct: 131 VWDEEEGLIPDLPSQRKSEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLTSIVKEAEK 190
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPP--FI 288
+ ADGVKE+ L ++ +YG D+ P LL AEL MT+ P F
Sbjct: 191 LAADGVKEITLLGQNVNSYGNDLEKETTFPKLL----AELNKVQKLKRIRFMTSHPRDFS 246
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
E L++IAE+ + V + +H+P+QSGS+ VL MNR YT + V+ + + +P +
Sbjct: 247 DELLEKIAELDK---VANHIHLPIQSGSNKVLKQMNRGYTREYYIERVEKIRKEMPHASV 303
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+TD I GFPGET+ DF QT+NL+KE F + + PR G
Sbjct: 304 STDFIVGFPGETEADFEQTINLVKELNFDMAYTFIYSPRSG 344
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|423452386|ref|ZP_17429239.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
gi|401140024|gb|EJQ47581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
Length = 450
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 511
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 174/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHLIEV--LAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L ++ F + PR G
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREG 403
>gi|340778949|ref|ZP_08698892.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acetobacter
aceti NBRC 14818]
Length = 471
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 181/369 (49%), Gaps = 37/369 (10%)
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
+ S S P T ++M T+GC N DS M L GYA D+ +AD+ ++NTC ++
Sbjct: 11 SASASEARPNTRGLHMITWGCQMNVYDSARMTDVLRPLGYAPVDDPAQADMIILNTCHIR 70
Query: 108 SPSQSAMDTLIAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQI 155
+ + + + + + K+ L VAGCV Q G + LK V IV G Q
Sbjct: 71 DRAAEKVFSELGRLRHIKEERSTEGRQTVLAVAGCVAQAEGEQILKRAPYVDIVLGPQTY 130
Query: 156 DRVVEVVEETLKGH----EVRLLHRKK---LPALDLPKVRRNKFVEILPINVGCLGACTY 208
R+ E+V + + +K LP + P+ N L + GC C++
Sbjct: 131 HRLPEMVARAARAGGSVIDTDFPAEQKFDFLPDSEAPQTAGN-VTAFLTVQEGCDKFCSF 189
Query: 209 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNA 265
C + RG S V S++ R ++A GV+E+ L ++ AY G D G L
Sbjct: 190 CVVPYTRGAEASRPVASVLAEARRMVASGVRELTLLGQNVNAYHGEGPDGGTWSLAQLAY 249
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAE--VLRH---PCVYSFLHVPVQSGSDAVL 320
+AE+P G+ ++ H +++ + ++ H P + FLH+PVQ+GSD +L
Sbjct: 250 ALAEIP---------GLERIRYMTSHPRDMGDDLIMAHRDLPALMPFLHLPVQAGSDKIL 300
Query: 321 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 380
AMNR +T ++R +VD L + P + +++D I G PGETDEDF T+ LI++ F +
Sbjct: 301 KAMNRGHTADEYRHLVDRLRAVRPDLALSSDFIVGHPGETDEDFEATMQLIRDVGFALAY 360
Query: 381 ISQFYPRPG 389
++ RPG
Sbjct: 361 SFKYSIRPG 369
>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens CM4]
gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
CM4]
Length = 462
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 23/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 21 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 80
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 81 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 137
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 138 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 196
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 197 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 256
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 257 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 314
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++D I GFPGETD DF +T+ L+ + F ++ PR G
Sbjct: 315 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAG 359
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 420
>gi|425737412|ref|ZP_18855685.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
gi|425482760|gb|EKU49916.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
Length = 448
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 178/351 (50%), Gaps = 24/351 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + Y D ++ AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDADYERVDFNQNADVFVINTCTVTNTGDKKSRQIIR 62
Query: 120 KC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ E+ GV IV G + R+++ +E K E
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTEGRSRLLDYIETYRKEREPINGV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + L++P ++ L I GC CT+C ARG + S E +V +
Sbjct: 123 GNIMKNRTYEELEVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 287
T++ G KE+ L+ TG YG+D+ NL LL + DG +RI
Sbjct: 182 TTLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---VDGLERIRISSIEASQLT 238
Query: 288 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
++E L++ +V+RH LHVP+QSGSD+VL M R+Y+++ F + L E +PG
Sbjct: 239 DEVIEVLQQSTKVVRH------LHVPLQSGSDSVLKRMRRKYSMAHFSERLTKLHEALPG 292
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ + +D+I GFPGET+E+F QT + I ++ F ++H+ + PR G +D
Sbjct: 293 LAVTSDVIVGFPGETEEEFQQTYDFIVDHHFSELHVFPYSPRIGTPAARMD 343
>gi|423558106|ref|ZP_17534408.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
gi|401191374|gb|EJQ98396.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
Length = 450
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|385787716|ref|YP_005818825.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
gi|310766988|gb|ADP11938.1| Putative tRNA-thiotransferase [Erwinia sp. Ejp617]
Length = 480
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 189/357 (52%), Gaps = 24/357 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAM 114
P T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 6 PMTKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKV 65
Query: 115 DTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETL 166
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +
Sbjct: 66 FGLLGRWKKLKEANPDVIIGVGGCVASQEGAQIRQRASCVDIVFGPQTLHRLPEMINR-V 124
Query: 167 KGHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+G + ++ P ++ +P+ R N + I GC CT+C + RG S
Sbjct: 125 RGTKSPVVD-VSFPEIEKFDRMPEPRANGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRP 183
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLR 279
+ ++ V + A GV+EV L ++ AY D G+ L +VA + DG +R
Sbjct: 184 ADDVLFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVATI--DGIDRIR 241
Query: 280 IGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
++P +E +I EV R P + SFLH+PVQSG+D +L+ M R +T +++ ++
Sbjct: 242 FTTSHP---IEFTDDIIEVYRDTPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRK 298
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
L+ P +QI++D I GFPGE DF QT+ L+ E F + + RPG +L
Sbjct: 299 LLAARPDIQISSDFIIGFPGENQADFEQTMKLVGEINFDTSYSFIYSARPGTPAADL 355
>gi|229890681|sp|B7KVE0.2|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 446
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 173/345 (50%), Gaps = 23/345 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NTC ++ + + + + +
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 122 KSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ K +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 240
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++D I GFPGETD DF +T+ L+ + F ++ PR G
Sbjct: 299 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAG 343
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 420
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|399036367|ref|ZP_10733472.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF122]
gi|398066026|gb|EJL57628.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Rhizobium sp. CF122]
Length = 474
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 181/355 (50%), Gaps = 29/355 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ +++KT+GC N DS M+ L+ GY T+ EEAD+ L+NTC ++ + + +
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEVLEEADLVLLNTCHIREKAAEKVYSA 80
Query: 118 IAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ + + KK + VAGCV Q G L+ V +V G Q R+ E + +
Sbjct: 81 LGRLRDMKKERNKEGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRKA 140
Query: 166 LKGHEV----RLLHRK--KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+G + L K LP + K+R L + GC CT+C + RG
Sbjct: 141 KEGQRIVDTEYALEDKFDHLPIAESKKIRSRGVTSFLTVQEGCDKFCTFCVVPYTRGSEV 200
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDG 274
S +V +V + ++ GV+E+ L ++ A+ +G N L LL + AE+P G
Sbjct: 201 SRSVSQIVEEAQKLVEGGVREITLLGQNVNAW-HGVGANGQEWTLGDLLYRL-AEIP--G 256
Query: 275 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
LR ++P + + L E LR + +LH+PVQ+GSD +L AMNR +T +++ T
Sbjct: 257 LARLRYTTSHPRDMDDRLIEAHRDLR--ALMPYLHLPVQAGSDRILKAMNRRHTAAEYLT 314
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+V+ + P + ++ D I GFPGETD DF+ T+ L++E ++ Q ++ RPG
Sbjct: 315 LVERIRTARPDIALSGDFIVGFPGETDRDFDDTLRLVEEVRYAQAFSFKYSTRPG 369
>gi|395767076|ref|ZP_10447613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella doshiae NCTC 12862]
gi|395414835|gb|EJF81272.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella doshiae NCTC 12862]
Length = 459
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 180/359 (50%), Gaps = 28/359 (7%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQ 111
SP +P + +++KT+GC N DS+ M L++ GY T +AD+ L+NTC ++ +
Sbjct: 11 SPVVP--KKVFIKTYGCQMNVYDSQRMTDSLNSQGYVTTQTPNDADLILVNTCHIREKAA 68
Query: 112 SAMDTLIAKCKSAK------KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVE 160
+ + + + + + KPL+ V GCV Q G+ L+ V +V G Q R+ +
Sbjct: 69 EKLYSDLGRLRVMRQERAPDKPLMIGVTGCVAQAEGNEILRRAPTVDLVIGPQMYHRLPD 128
Query: 161 VVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 211
++E+ +G ++ + H LPAL+ VR L + GC CT+C
Sbjct: 129 LLEQAKQGKKIVETDYAVEDKFAH---LPALNKRAVRNRGVSAFLTVQEGCDKFCTFCVV 185
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 271
+ RG S +VE + R +I GVKE+ L ++ A+ L ++ L
Sbjct: 186 PYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNAWHGQNAHGKTWRLGDLLHHLA 245
Query: 272 P-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
DG LR ++P + + L IA + +LH+PVQSGSD +L AMNR++
Sbjct: 246 KLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSI 303
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +++ + P + + D I GFPGETDEDF T+ LI++ K+ + ++ PRPG
Sbjct: 304 HYLHLIEKIRTARPDIAFSGDFIVGFPGETDEDFKDTIKLIQQVKYSSAYSFKYSPRPG 362
>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
Length = 514
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY TD E+A++ L+NTC ++ +++ + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGICLSLGYQPTDTVEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 121 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 170
K KK L V GC+ Q + ++ I G I R+ +++E E
Sbjct: 131 LKVLKKERPDLLLGVCGCMSQEESVVNKILSKHPHIDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIQ 250
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G +E+ L ++ AYG+D+ + L ++ E+ G +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNLMDEIRLMGVPRIRFSTSHPRDF 309
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL I + + + +H+PVQSGS VL M R+YT + +V + +P + +
Sbjct: 310 DDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKIMARKYTREQYLELVQKIKAAIPDVTL 367
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L++E F + + PR G
Sbjct: 368 TTDIIVGYPNETEEQFEETMSLVREVGFEAAYTFIYSPREG 408
>gi|344996160|ref|YP_004798503.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964379|gb|AEM73526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Caldicellulosiruptor lactoaceticus 6A]
Length = 471
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P RR + I GC C+YC + RG S E ++ +
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +GVKEV L ++ +YG+D+G + P LL V E+ G +R ++P + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L L C + +H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 279 ELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRG 375
>gi|304316648|ref|YP_003851793.1| MiaB-like protein tRNA modifying protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778150|gb|ADL68709.1| MiaB-like protein tRNA modifying enzyme [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 452
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 171/340 (50%), Gaps = 16/340 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E M GY + D E AD+++INTCTV + +S + AK
Sbjct: 27 TLGCKVNQYETEAMVEIFKNSGYDVVDFDEYADVYIINTCTVTGRGDMKSRQEIRKAKKI 86
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q S ++ L V+IV G + VV++VE+ E +
Sbjct: 87 NPDSIIAVVGCYSQVASNEVLNLPEVNIVLGTKNKGEVVKLVEKVSGDKEKINAVENIFD 146
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L + + L I GC CTYC +ARG + S ++++ V+ +
Sbjct: 147 NKKFEELKIS-AQEGHTRAYLKIQDGCNQFCTYCIIPYARGPVRSRRPDNILDEVKRLRD 205
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
+G KEV L+ +YG+D+ +NL ++ I DG +R+ P F+ E
Sbjct: 206 NGYKEVILTGIHVASYGKDLENINLLDIIKMI---HEVDGIERIRMSSIEPTFLTEDF-- 260
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
I EV P HV +QSGSD+ L M R+YT S++ ++D + + + + I TD++
Sbjct: 261 IKEVASLPKFCRHYHVSLQSGSDSTLKRMGRKYTTSEYMEIIDRIRKYIKDVAITTDVMV 320
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLN 394
GFPGETDE+FN+T +K +F ++H+ ++ R G + N
Sbjct: 321 GFPGETDEEFNETYEFLKSIEFSKMHVFKYSRRAGTKAAN 360
>gi|423521831|ref|ZP_17498304.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
gi|401176493|gb|EJQ83688.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
Length = 450
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 180/341 (52%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY T+ +++D+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 171
+ ++ + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 172 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE +F ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTG 337
>gi|229815363|ref|ZP_04445698.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
13280]
gi|229809143|gb|EEP44910.1| hypothetical protein COLINT_02409 [Collinsella intestinalis DSM
13280]
Length = 453
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 171/343 (49%), Gaps = 17/343 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N DSE ++G L + G + + +ADI + TC V+ + + +
Sbjct: 10 KTYFIRTFGCQMNLHDSERVSGLLDSCGCLVASSPADADIVIFMTCCVREAADTRLYGQC 69
Query: 119 AKCKS------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG- 168
+ CKS K+ + V GC+ Q G L L+ V ++ G I V +++ +
Sbjct: 70 SSCKSLPASPSGKRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVADLLADAFADG 129
Query: 169 -HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
H VR+ A D+P R + +PI GC C+YC + RG S ++ +V
Sbjct: 130 DHHVRVEEIDTGAATDMPWHRETAYHAWVPIMTGCNNFCSYCIVPYVRGREKSRPMDEIV 189
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
V ++ GV+ + L ++ +YGRD + ++ + G + ++P
Sbjct: 190 DEVTGLVRQGVRSITLLGQNVNSYGRDH--DHDPRFAELLRRVGDTGIERIYFTSSHPKD 247
Query: 288 IL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+L E + +AEV P V LH+ VQSGS +L MNR+YT + +V + + +P +
Sbjct: 248 LLPETIDAMAEV---PAVMPQLHLAVQSGSSRILKLMNRKYTREQYLDLVQRVRDRIPNI 304
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFPGE +EDF QTV+L+ E KF Q + R G
Sbjct: 305 ALTTDIIVGFPGEAEEDFEQTVSLVDEAKFAQAFTFIYSKREG 347
>gi|329296076|ref|ZP_08253412.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Plautia stali symbiont]
Length = 474
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 185/350 (52%), Gaps = 26/350 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEDADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKS--AKKP---LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K AK P + V GCV +G + + + V IV G Q + R+ E++ + ++G
Sbjct: 62 LLGRWKKLKAKNPELIIGVGGCVASQEGDKIRQRAQCVDIVFGPQTLHRLPEMINQ-VRG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + I GC CT+C + RG S +
Sbjct: 121 SKSTIVD-VSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPPDGSTMLRI 280
++ V + A GV+EV L ++ AY D LL + A DG +R
Sbjct: 180 DILLEVAQLAAQGVREVNLLGQNVNAYRGATFDDQICTFAELLRLVAA---IDGIDRIRF 236
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P +E +I +V R P + SFLH+PVQSG+D +L+ M R +T +++ ++ L
Sbjct: 237 TTSHP---IEFTDDIIDVYRDMPELVSFLHLPVQSGADRILTLMKRAHTALEYKAIIRKL 293
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ P +QI++D I GFPGET +DF QT+ LI E F + RPG
Sbjct: 294 VAARPDIQISSDFIIGFPGETQQDFEQTMKLIGEVNFDTSFSFIYSARPG 343
>gi|49473881|ref|YP_031923.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bartonella
quintana str. Toulouse]
gi|81647252|sp|Q6G0N1.1|MIAB_BARQU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49239384|emb|CAF25717.1| hypothetical protein BQ02140 [Bartonella quintana str. Toulouse]
Length = 458
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 182/363 (50%), Gaps = 31/363 (8%)
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
T S+ PK +++KT+GC N DS+ M LS+ GY T +AD+ L+NTC ++
Sbjct: 9 TPSVVPK-----KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIR 63
Query: 108 SPSQSAMDT------LIAKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQID 156
+ + + ++ + ++ KPL+ V GCV Q G+ L+ V +V G Q
Sbjct: 64 EKAAEKLYSDLGRLRVMRQARTLDKPLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYH 123
Query: 157 RVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
R+ +++E+T +G ++ + H LP + VR+ L + GC CT
Sbjct: 124 RLPDLLEQTKQGKKIVETDYPVEDKFAH---LPPHNKRAVRKRGVSAFLTVQEGCDKFCT 180
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
+C + RG S +VE + R +I GVKE+ L ++ + I L ++
Sbjct: 181 FCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQIANGKTWRLGDLL 240
Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
L DG LR ++P + + L IA + +LH+PVQSGSD +L AMNR+
Sbjct: 241 YHLAKLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILKAMNRQ 298
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
+ + +++ + P + + D I GFPGETDEDF +TV LIK+ ++ + ++ P
Sbjct: 299 HKSIHYLHLIEKIRTARPDIAFSGDFIVGFPGETDEDFEETVKLIKQVQYSSAYSFKYSP 358
Query: 387 RPG 389
RPG
Sbjct: 359 RPG 361
>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
BL2]
Length = 498
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 176/353 (49%), Gaps = 31/353 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+KT+GC N DSE ++G L GY D ++AD+ + NTC V+ + + + + +
Sbjct: 20 VKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGNLGQLA 79
Query: 123 SAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 174
K+ + V GC+ Q RD +K+ V +V G + + ++E E ++
Sbjct: 80 HVKERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQEAQV- 138
Query: 175 HRKKLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ L +LD LP R ++ + I+VGC +CT+C RG ++
Sbjct: 139 --EILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAE 196
Query: 230 VRTVIADGVKEVWLSSEDTGAYG---RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP- 285
V ++ADGV EV L ++ +YG RD G +L E + R+ T+P
Sbjct: 197 VEALVADGVVEVTLLGQNVNSYGSEFRDKGAFAKLLRAVGKVE------GIERVRFTSPH 250
Query: 286 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
F + + +AE P V LH+P+QSGSD++L +M R Y S F ++D++ E +
Sbjct: 251 PASFSDDVIDAMAET---PAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDSVREKI 307
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
P I TDII GFPGET+EDF T+++++ +F Q Q+ RPG +D
Sbjct: 308 PNAAITTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMD 360
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kronotskyensis 2002]
Length = 471
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 175/339 (51%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KEKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P RR + I GC C+YC + RG S E ++ +
Sbjct: 162 VSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRQPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +G+KEV L ++ +YG+D+G N+ P LL V E+ G +R ++P + +
Sbjct: 222 LAQNGIKEVTLLGQNVNSYGKDLGNNITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L L C + +H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 279 ELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRG 375
>gi|148380907|ref|YP_001255448.1| MiaB family RNA modification protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931336|ref|YP_001385215.1| RNA modification protein [Clostridium botulinum A str. ATCC 19397]
gi|153937595|ref|YP_001388684.1| RNA modification protein [Clostridium botulinum A str. Hall]
gi|148290391|emb|CAL84518.1| putative radical SAM superfamily protein [Clostridium botulinum A
str. ATCC 3502]
gi|152927380|gb|ABS32880.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
ATCC 19397]
gi|152933509|gb|ABS39008.1| RNA modification enzyme, MiaB family [Clostridium botulinum A str.
Hall]
Length = 432
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 21/340 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LLH 175
++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + R +K L I GC C+YC ARG + S E ++ V +
Sbjct: 127 NKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVEKLSK 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 186 HGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDKVEGIERIRIGSIDPTFFTEE--- 240
Query: 295 IAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I TD
Sbjct: 241 --EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
II GFPGET+E+FN+T +++ K ++H+ +F PR G +
Sbjct: 299 IIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTR 338
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|399889711|ref|ZP_10775588.1| RNA modification protein [Clostridium arbusti SL206]
Length = 433
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 172/338 (50%), Gaps = 17/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E M + G+ + +++ AD+++INTCTV + +I+K K
Sbjct: 7 TLGCRVNQYETEAMTEKFIKEGFQIVTHNDVADVYVINTCTVTNMGDRKSRQMISKVKKL 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-----LH 175
++A GC Q S ++ +++GV ++ G + ++V V + + +
Sbjct: 67 NGDAIIAVVGCYSQIASDEISKIDGVDVILGTKNKGQIVYFVNRAINEKKQMIAVNDVFV 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K L++ + + ++ L I GC C+YC +ARG + S + ++ V+ +
Sbjct: 127 DKSFEELNIEEYQ-DRTRAFLKIQDGCNRFCSYCLIPYARGGVCSKEPDKVLEEVKKLAE 185
Query: 236 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
G KE+ LS T +YG DI NL LL I G +RIG +P F E +
Sbjct: 186 HGFKEIILSGIHTASYGVDIKGDCNLVSLLEKID---KIQGINRVRIGSIDPTFFTEGVI 242
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E L+ C + H+ +QSG D L MNR+YT +++ +V+ L + + I TD+I
Sbjct: 243 ERIASLKKLCPH--FHLSLQSGCDETLKRMNRKYTTEEYKNIVEDLRNNIKDVSITTDVI 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGETDE+F T N ++E K ++HI ++ PR G +
Sbjct: 301 VGFPGETDEEFTSTYNFLREIKLSKMHIFKYSPRKGTK 338
>gi|334128879|ref|ZP_08502757.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
gi|333386121|gb|EGK57341.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Centipeda periodontii DSM
2778]
Length = 437
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 34/350 (9%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK 125
+GC N +D+E M GQL + GY T+ +ADI LINTC V+ ++ + I + K K
Sbjct: 10 YGCQMNIADAERMEGQLQSAGYVRTEEMADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 126 KP-----LVVAGCVPQGSRD--LKELEGVSIV----GVQQIDRVVE--------VVEETL 166
+ +AGC+ Q D ++ + V VQ++ R+V VV+ TL
Sbjct: 70 EQNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIAAEHSPVVDVTL 129
Query: 167 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
E+ A +LP R KF +PI GC CTYC + RG S E +
Sbjct: 130 SDSEI---------AENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEV 180
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD-IGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
V VR +A+G +EV L ++ +YG+D + LL +V E+ +G +R ++P
Sbjct: 181 VAEVRRAVAEGYREVTLLGQNVNSYGKDHRAADFADLLR-MVDEV--EGIRRVRFMTSHP 237
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
I + L + + H C + +H+PVQ GS +L AMNR YT+ +R + E +P
Sbjct: 238 KDISDKLIDTIQSGTHICEH--IHLPVQYGSTRILKAMNRGYTVEKYRERARRVREALPE 295
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+ TD+I GFPGETDEDF + + ++E ++ + + R G N+
Sbjct: 296 ASLTTDLIVGFPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSGTPAANM 345
>gi|150015722|ref|YP_001307976.1| MiaB-like tRNA modifying protein [Clostridium beijerinckii NCIMB
8052]
gi|149902187|gb|ABR33020.1| MiaB-like tRNA modifying enzyme [Clostridium beijerinckii NCIMB
8052]
Length = 432
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 171/337 (50%), Gaps = 15/337 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N ++E MA + GY +TD AD+++INTC+V + S +I++ +
Sbjct: 5 TLGCRVNHYETEAMAEKFIREGYEVTDFEGFADVYVINTCSVTNMSDKKSRQIISRARRR 64
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-----LH 175
+ ++A GC Q ++ +++GV +V G + +V V + + +L L
Sbjct: 65 NENAIIAAVGCYSQVAPEEVSKIQGVDVVLGTRNKGDIVYYVNKAKDEQKPQLMVGEVLK 124
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + + +K L I GC C YC + RG S + ++ ++ +
Sbjct: 125 NKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCLIPYTRGTTCSKDPQKVLDEIKNLSE 183
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS T +YG D+ N+ ++ ++ E+ DG +RIG P F + + E
Sbjct: 184 HGFKEIILSGIHTASYGVDLDGNVTLI--TLLEEIEKLDGIERVRIGSIEPSFFTDEVIE 241
Query: 295 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 354
+ ++ C H+ +QSG DA L MNR YT ++ V+ + E + I TD+I
Sbjct: 242 KMKKMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNRIRENLKDASITTDVIV 299
Query: 355 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGETDE+FN+T +K K + HI +F PR G +
Sbjct: 300 GFPGETDEEFNETYEYLKRIKLTKTHIFKFSPRKGTK 336
>gi|292898859|ref|YP_003538228.1| MiaB protein [Erwinia amylovora ATCC 49946]
gi|291198707|emb|CBJ45816.1| MiaB protein (methylthiolation of isopentenylated A37 derivatives I
rRNA) [Erwinia amylovora ATCC 49946]
Length = 474
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 185/355 (52%), Gaps = 36/355 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 62 LLGRWKKLKEANPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMIN-SVRG 120
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 121 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 173
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 174 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 231
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
+R ++P +E +I EV R P + S+LH+PVQSG+D +L+ M R +T +++
Sbjct: 232 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKA 288
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++ L+ P +QI++D I GFPGET DF QT+ L+ E F + + RPG
Sbjct: 289 IIRKLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPG 343
>gi|392960702|ref|ZP_10326167.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans DSM 17108]
gi|421054540|ref|ZP_15517508.1| MiaB-like tRNA modifying enzyme YliG [Pelosinus fermentans B4]
gi|421057793|ref|ZP_15520559.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans B3]
gi|421065829|ref|ZP_15527521.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A12]
gi|421071402|ref|ZP_15532522.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A11]
gi|392440898|gb|EIW18558.1| MiaB-like tRNA modifying enzyme YliG [Pelosinus fermentans B4]
gi|392447318|gb|EIW24572.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A11]
gi|392454599|gb|EIW31421.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans DSM 17108]
gi|392458033|gb|EIW34624.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans A12]
gi|392462134|gb|EIW38250.1| Ribosomal protein S12 methylthiotransferase rimO [Pelosinus
fermentans B3]
Length = 444
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 170/331 (51%), Gaps = 14/331 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCT-VKSPSQSAMDTLIAKCKS 123
+ GC+ N D+E M G L+ +TDN EADI +INTC+ + S + ++ T++
Sbjct: 8 SLGCAKNLVDTEVMLGLLATNDIKITDNPHEADILIINTCSFIDSAKEESISTILQMADY 67
Query: 124 AK----KPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHR 176
K K L+VAGC+ Q + L EL V +I+G R++E + +TL H+ LL
Sbjct: 68 KKHGNCKCLIVAGCLGQRYQQELLDELPEVDAIIGTGAWHRIIEAINDTLVDHKRVLLVG 127
Query: 177 KKLPALD--LPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 233
+ D +P++ F + I GC C+YC RG S T+ES++ V+ +
Sbjct: 128 ETNTLYDETMPRINTTPFYSAYVKIAEGCSNCCSYCIIPKVRGSFRSRTMESIIAEVKNL 187
Query: 234 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 293
+A GVKE+ L ++DT +YGRD+ + P L + + DG +R+ P + L
Sbjct: 188 VATGVKEINLIAQDTTSYGRDL-YDSPKLTTLLKELVKIDGLMWVRLLYCYPKYFSNELI 246
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
E+ C Y + +P+Q +D +L AM R+ D T++ TL +P + I T I
Sbjct: 247 ELIATESKICKY--IDLPLQHANDDILKAMLRQDGRKDIETLLTTLRAKIPSITIRTSFI 304
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
GFPGET+E F + I E KF +V + +
Sbjct: 305 VGFPGETEEHFEDLKHFIMEQKFDRVGVFTY 335
>gi|440778294|ref|ZP_20957060.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
avium subsp. paratuberculosis S5]
gi|436721397|gb|ELP45532.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mycobacterium
avium subsp. paratuberculosis S5]
Length = 497
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 185/384 (48%), Gaps = 26/384 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSP 109
++ + G T ++T+GC N DSE +AG L A GY + +E AD+ + NTC V+
Sbjct: 1 MARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFNTCAVREN 60
Query: 110 SQSAMDTLIAKCKSAKK-----PLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 161
+ + + ++ K+ + V GC+ Q R+ L+ V +V G I + +
Sbjct: 61 ADNKLYGNLSHLAPRKRGNPEMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHNIGSLPTL 120
Query: 162 VEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 219
+E K +V + + LP R + + + I+VGC +CT+C RG
Sbjct: 121 LERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVPSLRGKEV 180
Query: 220 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILLNAIVAEL 270
+ + ++ VR+++ADGV EV L ++ AYG RD G LL A E+
Sbjct: 181 DRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLLRA-CGEI 238
Query: 271 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 330
DG +R +P + + I + + P V LH+P+QSGSD VL AM R Y
Sbjct: 239 --DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAMRRSYRAE 294
Query: 331 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGI 390
F ++D + +P I TD+I GFPGET+EDF T+++++ +F Q+ RPG
Sbjct: 295 RFLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGT 354
Query: 391 QFLNLDSTELLSLLFSNYKFTVML 414
LD +++ Y+ V L
Sbjct: 355 PAAELDGQIPKAVVQERYERLVEL 378
>gi|383760090|ref|YP_005439076.1| tRNA-i(6)A37 modification enzyme MiaB [Rubrivivax gelatinosus
IL144]
gi|381380760|dbj|BAL97577.1| tRNA-i(6)A37 modification enzyme MiaB [Rubrivivax gelatinosus
IL144]
Length = 444
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 182/352 (51%), Gaps = 23/352 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DS MA L+A G Y TD+ E+AD+ L NTC+V+ +Q + + +
Sbjct: 4 VYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSDLG 63
Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K KK V V GCV +G+ ++ V +V G Q + R+ +++ + E R
Sbjct: 64 RVKHLKKKGVLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMI--AARSAERRP 121
Query: 174 LHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P ++ LP R + I GC CTYC + RG S E ++
Sbjct: 122 QVDISFPEIEKFDHLPPPRVEGASAFVSIMEGCSKYCTYCVVPYTRGEEVSRPFEDVLTE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTN 284
V + GVKEV L ++ AY +G +L +LL VAE+P G +R ++
Sbjct: 182 VADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLE-YVAEVP--GIERIRFTTSH 238
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L I R P + S LH+PVQ GSD +LSAM R YT ++++ + L E P
Sbjct: 239 PNEFTQRL--IEAYGRIPKLVSHLHLPVQHGSDRILSAMKRGYTALEYKSTIRKLREQRP 296
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
G+ +++D I GFPGET++DF++T+ LI++ + + RPG LD
Sbjct: 297 GISLSSDFIVGFPGETEDDFSKTMKLIEDVGYDASFSFVYSQRPGTPAAALD 348
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|319406556|emb|CBI80198.1| bifunctional enzyme [Bartonella sp. 1-1C]
Length = 460
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 184/368 (50%), Gaps = 28/368 (7%)
Query: 43 NHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN 102
+H + + ++ P G + +++KT+GC N DS+ M LSA GY T +AD+ LIN
Sbjct: 2 DHRTNSKNILPS--GPKKVFIKTYGCQMNVYDSQRMNDSLSAQGYIATQTPNDADLILIN 59
Query: 103 TCTVKSPSQSAMDT------LIAKCKSAKKPLV--VAGCVPQ--GSRDLKELEGVS-IVG 151
TC ++ + + + +I + ++ KPL+ V GCV Q G+ L+ V I+G
Sbjct: 60 TCHIREKAAEKLYSDLGRLQIIRQGRTHDKPLMIGVTGCVAQAEGNEILRRAPTVDFIIG 119
Query: 152 VQQIDRVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGC 202
Q R+ E++++ +G +V + H LP + VR+ L + GC
Sbjct: 120 PQMYHRLPELLKQVKQGKKVVETDYAVEDKFSH---LPPHNKQAVRQRGISAFLTVQEGC 176
Query: 203 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPI 261
CT+C + RG S +V+ + +I GVKE+ L ++ A+ G+ I
Sbjct: 177 DKFCTFCVVPYTRGAEISRSVKQITAEAHQLIEAGVKEITLLGQNVNAWHGQSIDGKTWR 236
Query: 262 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 321
L + + DG LR +P + + L IA + +LH+PVQSGSD +L
Sbjct: 237 LGDLLHHLAKIDGLKRLRYTTNHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILK 294
Query: 322 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 381
AMNR++ + ++D + P + + D I GFPGETDEDF +T+ LIK+ + +
Sbjct: 295 AMNRQHKSIHYLNLIDKIRAAKPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYS 354
Query: 382 SQFYPRPG 389
++ PRPG
Sbjct: 355 FKYSPRPG 362
>gi|291543948|emb|CBL17057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Ruminococcus
champanellensis 18P13]
Length = 455
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 179/343 (52%), Gaps = 20/343 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+++FGC N +D E + L + GY LT+ E+AD+ L+NTC V+ ++ + + + K
Sbjct: 23 VQSFGCQLNMTDGEKLKWLLLSMGYGLTEEPEQADLILLNTCAVREHAEDRVFGHLGQLK 82
Query: 123 --SAKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG--HE 170
KKP ++ GC+ ++L+ +VG ++R+ ++ E L G H
Sbjct: 83 PYKQKKPGLIIGLCGCMTAEEPVREKLKASYPYVNLVVGTGALERLPAMLLEILGGKKHS 142
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
V + P+ +L +VR F +PI GC CTYC + RG S + + +V
Sbjct: 143 VDAT-VQSAPSEELSQVRSCSFKASVPIMYGCNNFCTYCIVPYVRGRERSRDPKIIERQV 201
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
R +++ G KE++L ++ +YG+D+ G+ P LL + A +G +R ++P
Sbjct: 202 RELVSQGCKEIFLLGQNVNSYGKDLPDGIRFPELLRRLDA---IEGEYWIRFMSSHPKDA 258
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
L ++ RH V LH+PVQSGSD++L AMNR YT+ + V VP +
Sbjct: 259 TPELIDVICNSRH--VEKHLHLPVQSGSDSILHAMNRCYTVKKYLETVRYARSRVPDFAL 316
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
TDII GFP ETDE+F+ T+ L+++ F V+ + PR G +
Sbjct: 317 TTDIIVGFPNETDEEFSATLGLLEQVGFDNVYSFIYSPRSGTK 359
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp.
JS42]
gi|229890416|sp|A1WBW2.1|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42]
Length = 448
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/358 (32%), Positives = 182/358 (50%), Gaps = 31/358 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NTC+V+ +Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 117 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ + K K V V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRVKHLKDKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELL--NARAAK 119
Query: 171 VRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
R P ++ LP R + I GC C+YC + RG S E +
Sbjct: 120 ARPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 179
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIG 281
+ V + GVKEV L ++ AY +G + +LL VAE+P G +R
Sbjct: 180 LVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLE-YVAEIP--GIERIRFT 236
Query: 282 MTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
++P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ +
Sbjct: 237 TSHPNEFTPRLIEAYAKIPKLVSH------LHLPVQHGSDRILMAMKRGYTAMEYKSTIR 290
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
L + P M +++D I GFPGET+EDF + + LI + +F F PRPG NL
Sbjct: 291 KLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANL 348
>gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1]
gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens
MI-1]
Length = 436
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 168/338 (49%), Gaps = 20/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ +S +A GY + D + AD ++INTCTV +I + S
Sbjct: 9 TLGCKVNQYESSAIADLFRQAGYEIVDFEQHADAYVINTCTVTHMGDRKSRQIIRRA-SK 67
Query: 125 KKP---LVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-----RLL 174
+ P + V GC Q S ++ E+ GV +VG + R+V++VE +G ++
Sbjct: 68 QNPAAVITVTGCYAQTSPGEVLEIPGVDLVVGTKDKSRIVQLVEAYSRGKGPVNAVDDIM 127
Query: 175 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 234
L +P + K L I GC C YC +ARG + S E+++ +I
Sbjct: 128 QTDCFEELPVP-TEQGKTRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVLSSAEELI 186
Query: 235 ADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
G +E+ L+ GAYG+D ++L L+ + A+LP G T LR+G P I
Sbjct: 187 QQGFQEIVLTGIHIGAYGQDFTGKDIDLGWLVERL-AKLP--GLTRLRLGSVEPHDINNA 243
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
L I V HP V LH+P+QSG D +L+ M R Y F ++ + +++PG+ I +D
Sbjct: 244 L--IKAVSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIHKINQIMPGIAITSD 301
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
II GFPGET E F T+ ++ F +H+ ++ PR G
Sbjct: 302 IIVGFPGETQEHFQNTLKTVERSGFAGIHVFKYSPRKG 339
>gi|319408022|emb|CBI81676.1| bifunctional enzyme [Bartonella schoenbuchensis R1]
Length = 458
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 183/371 (49%), Gaps = 31/371 (8%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
+ +HL T S+SP + +++KT+GC N DS+ M LSA GY T +AD+
Sbjct: 1 MKQSHLKNTLSISP-----QKVFIKTYGCQMNTYDSQRMNDSLSAEGYVTTQTPNDADLI 55
Query: 100 LINTCTVKSPSQSAMDT------LIAKCKSAKKPLV--VAGCVPQGSRD--LKELEGVS- 148
L+NTC ++ + + + +I + ++ KPL+ V GCV Q D L+ V
Sbjct: 56 LVNTCHIREKAAEKLYSDLGRLRMIRQKRAPDKPLIIGVTGCVAQAEGDEILRRAPTVDL 115
Query: 149 IVGVQQIDRVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPIN 199
+VG Q R+ E++++ +G ++ + H LP + V++ L I
Sbjct: 116 VVGPQMYHRLPELLKQAKQGKKIVETNYAVEDKFTH---LPPHNKHAVQKRGVSAFLTIQ 172
Query: 200 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED-TGAYGRDIGVN 258
GC CT+C + RG S VE + +I GVKE+ L ++ G +G+
Sbjct: 173 EGCDKFCTFCVVPYTRGAETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGWHGQSANGK 232
Query: 259 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 318
L + + DG LR ++P + + L IA + +LH+PVQSGSD
Sbjct: 233 TWRLGDLLYHLAKLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDMLMPYLHLPVQSGSDR 290
Query: 319 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 378
+L AMNR++ + +++ + P + + D I GFPGETDEDF +T+ LIK+ +
Sbjct: 291 ILKAMNRQHKSIHYLKLIEKIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSS 350
Query: 379 VHISQFYPRPG 389
+ ++ PRPG
Sbjct: 351 AYSFKYSPRPG 361
>gi|312127656|ref|YP_003992530.1| RNA modification enzyme, miab family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777675|gb|ADQ07161.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
hydrothermalis 108]
Length = 434
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 27/341 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ ++++++E V I+ G + R+V+ V + L+ +KK+
Sbjct: 67 SPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQRIVDYVRQYLE-------DKKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A+D + +R F E+ + I GC C+YC +ARG + S +++S+
Sbjct: 120 AID-GEYKREAFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKSIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V ++ G KE ++ + +YG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVIRLVQKGYKEFVITGINISSYGKDLDGKVT-LIDVIERVNKIEGVKRIRLSSLEPVIM 237
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ I +L + LH+ +QSGSD +L MNR YT + ++ +VD + E +
Sbjct: 238 NDEF--IERLLGFDKLCHHLHLSLQSGSDKILKLMNRHYTTAKYQGIVDRIREKWEDVAF 295
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ G
Sbjct: 296 TTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKG 336
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|229890676|sp|A0QIR4.2|MIAB_MYCA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 715
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 26/391 (6%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLIN 102
H T +++ + G T ++T+GC N DSE +AG L A GY + +E AD+ + N
Sbjct: 14 HGPVTSTVARDVSGVRTYQVRTYGCQMNVHDSERLAGLLEAAGYRRAAEGAEVADVVVFN 73
Query: 103 TCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIV-GVQQ 154
TC V+ + + + ++ K+ + V GC+ Q R+ L+ V +V G
Sbjct: 74 TCAVRENADNKLYGNLSHLAPRKRSNPQMQIAVGGCLAQKDREAVLRRAPWVDVVFGTHN 133
Query: 155 IDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 212
I + ++E K +V + + LP R + + + I+VGC +CT+C
Sbjct: 134 IGSLPTLLERARHNKAAQVEIAEALQQFPSSLPSARESAYAAWVSISVGCNNSCTFCIVP 193
Query: 213 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG---------RDIGVNLPILL 263
RG + + ++ VR+++ADGV EV L ++ AYG RD G LL
Sbjct: 194 SLRGKEVDRSPDDILAEVRSLVADGVLEVTLLGQNVNAYGVSFADPALPRDRGA-FARLL 252
Query: 264 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 323
A E+ DG +R +P + + I + + P V LH+P+QSGSD VL AM
Sbjct: 253 RA-CGEI--DGLERVRFTSPHPAEFTDDV--IEAMAQTPNVCPALHMPLQSGSDRVLRAM 307
Query: 324 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 383
R Y + ++D + +P I TD+I GFPGET+EDF T+++++ +F Q
Sbjct: 308 RRSYRAERYLGIIDRVRAAMPHAAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQ 367
Query: 384 FYPRPGIQFLNLDSTELLSLLFSNYKFTVML 414
+ RPG LD +++ Y+ V L
Sbjct: 368 YSKRPGTPAAELDGQIPKAVVQERYERLVEL 398
>gi|402829205|ref|ZP_10878081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
gi|402284186|gb|EJU32689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
Length = 454
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 173/354 (48%), Gaps = 26/354 (7%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
+I +T Y T+GC N+ DSE +AG L + G EE++I + TC V+ +
Sbjct: 5 EILTNKTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIR 64
Query: 114 MDTLIAKCKSA---------KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVV 159
+ ++ K K+ + + GC+ G RD + L+ V +V G Q I+R+
Sbjct: 65 LMGQVSTIKGVPLPEGSALDKRIVCIGGCI--GQRDGVALTETLDNVDVVFGTQNIERLP 122
Query: 160 EVVEETLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
++ L GH V + + DLP R + LPI VGC CT+C + RG
Sbjct: 123 YLITGVLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGR 182
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 275
S T+E +V +A+GVKE+ L ++ +YGRD+ +L A+ A G
Sbjct: 183 ERSRTIEDVVTNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GV 238
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 335
LR ++P + + + IA + LH+PVQSGSD VL MNR Y + + +
Sbjct: 239 ERLRFATSHPKDLTDEV--IAAFGELGNLMPALHLPVQSGSDRVLEDMNRTYDSAHYLGL 296
Query: 336 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
V L P + ++TD+I GFPGET+EDF T +LI+ + QV + R G
Sbjct: 297 VRKLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREG 350
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|443623627|ref|ZP_21108124.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Streptomyces viridochromogenes Tue57]
gi|443342870|gb|ELS57015.1| putative (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Streptomyces viridochromogenes Tue57]
Length = 505
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 183/370 (49%), Gaps = 15/370 (4%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAM 114
G +T ++T+GC N DSE ++G L GY A + +AD+ + NTC V+ + + +
Sbjct: 12 GVKTYEVRTYGCQMNVHDSERLSGLLEEAGYVRAPEGSDGDADVVVFNTCAVRENADNKL 71
Query: 115 DTLIAKC--KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 166
+ K A++P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 167 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEDAQVEIAEALEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPH 250
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + IA + P V LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLL 404
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPG +++ ++
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMENQIPKEVV 368
Query: 405 FSNYKFTVML 414
+ Y+ V L
Sbjct: 369 QARYERLVAL 378
>gi|27904873|ref|NP_777999.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|46397184|sp|Q89AC2.1|MIAB_BUCBP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|27904271|gb|AAO27104.1| hypothetical protein bbp_392 [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 445
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 181/349 (51%), Gaps = 30/349 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
IY+KT+GC N+ DS + L GY T + + A++ ++NTC+++ +Q + +
Sbjct: 6 IYIKTWGCQMNEYDSALITQILKQKHGYENTKDPKLANVLILNTCSIREKAQEKVFHQLG 65
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K K+ + V GCV +G K V I+ G Q + + +++E K
Sbjct: 66 RWKKLKQKNPNLIIAVGGCVATQEGKNIYKRANYVDIIFGTQTLHYLPNMIQEVKK---- 121
Query: 172 RLLHRKKLPALDLPKVRRNKFVE---------ILPINVGCLGACTYCKTKHARGHLGSYT 222
++K + +D P + F+E + I GC C++C + RGH S
Sbjct: 122 ---NKKSVTNIDFPLTEKFNFIEYPRKPKVTAFVSIMEGCNKFCSFCIVPYTRGHEISRP 178
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIG 281
V+ ++ + T+ + GVKE+ L ++ +Y G+ ++ N + DG +R
Sbjct: 179 VDDILLEISTLSSRGVKEIHLLGQNVNSYKGKTFNGDICKFSNLLRLVASIDGIDRIRFT 238
Query: 282 MTNPPFILEHLKEI-AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
+NP + + EI AE+ P + SFLH+PVQSGS+ +L M R +T+ +++T+++ ++
Sbjct: 239 TSNPFEFTDDIIEIYAEI---PKIVSFLHLPVQSGSNRILQLMKRMHTIDEYKTIINKIL 295
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+L P +QI++D I GFPGET DF QT+ LIK+ + + PRPG
Sbjct: 296 KLRPNIQISSDFIIGFPGETLIDFEQTLQLIKDLNIDMSYSFIYSPRPG 344
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|451948467|ref|YP_007469062.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfocapsa sulfexigens DSM 10523]
gi|451907815|gb|AGF79409.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfocapsa sulfexigens DSM 10523]
Length = 448
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 185/358 (51%), Gaps = 31/358 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
++T ++KTFGC N DSE MA L GY T +SE AD+ ++NTC++++ ++ + +L
Sbjct: 3 SKTFFIKTFGCQMNLRDSEIMAQLLGEKGYVETSDSETADLIILNTCSIRAKAEQKVMSL 62
Query: 118 IAKCKSAKK-----PLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ + KK + VAGCV Q G + ++ + V +VG Q I + E+++E +
Sbjct: 63 LGVLRKQKKRNPNLKICVAGCVAQQEGQQIIERMPHVDLVVGTQNIYELAELLKEKKQQT 122
Query: 170 -EVRLLHRKKLPALDLPKVRRNK-------FVEILPINVGCLGACTYCKTKHARGHLGSY 221
L+ +PA +P + + + F + L I GC CTYC + RG S
Sbjct: 123 VATSLVDNYSIPAF-IPDLGKQESEVGPVVFKKFLTIMQGCNNYCTYCVVPYTRGREISR 181
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV-------NLPILLNAIVAELPPDG 274
++ R ++ GVKE+ L ++ +YG+ V + LL VA +P G
Sbjct: 182 QASHILQEARALVDGGVKEITLLGQNVNSYGKTNNVIEGNGSFSFSDLLRQ-VASIP--G 238
Query: 275 STMLRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
LR +NP + + L + AEV + H+PVQSGS+ +LS MNR+Y+ +
Sbjct: 239 LRQLRFTTSNPKDLSDDLMRCFAEV---DILCPHFHLPVQSGSNRILSLMNRKYSRELYL 295
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
V L P + I TD+I GFPGET+EDF +T+ L++E + + ++ RPG +
Sbjct: 296 EKVAALRSYCPEIAITTDMIVGFPGETNEDFEETMALLEEVYYHGSYSFKYSDRPGTR 353
>gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
owensensis OL]
gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
owensensis OL]
Length = 471
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 173/339 (51%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKRTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P R+ + I GC C+YC + RG S E ++ +
Sbjct: 162 VSENEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +GVKEV L ++ +YG+D+ G+ P LL I E+ G +R ++P +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLVNGITFPKLLEKI-NEIK--GIERIRFVTSHPKDLSN 278
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L L C + +H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 279 ELIAAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGETDEDF T+++ K+ +F + + R G
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRG 375
>gi|336321139|ref|YP_004601107.1| RNA modification enzyme, MiaB family [[Cellvibrio] gilvus ATCC
13127]
gi|336104720|gb|AEI12539.1| RNA modification enzyme, MiaB family [[Cellvibrio] gilvus ATCC
13127]
Length = 518
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 181/386 (46%), Gaps = 23/386 (5%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD----NSEEADIWLI 101
+ T + +P+ P T +KT GC N DSE+MAG L A GY +E+AD+ +I
Sbjct: 8 ASTTASTPQTP-RRTYLVKTLGCQMNVHDSEHMAGMLEAAGYVAASPEQAAAEDADVIVI 66
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP------LVVAGCVPQGSRD--LKELEGVSIV-GV 152
NTC V+ + + + + K+ + V GC+ Q R ++ V +V G
Sbjct: 67 NTCAVRENAADKLYGNLGRLAGTKRSRPGGMQIAVGGCLAQKDRSGIVERAPWVDVVFGT 126
Query: 153 QQIDRVVEVVEETL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 210
+D + ++E +V + K+ LP R + + + I+VGC CT+C
Sbjct: 127 HNLDVLPALLERARHNAAAQVEIEESLKVFPSTLPTRRESAYAGWVSISVGCNNTCTFCI 186
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVA 268
H RG ++ V ++A G EV L ++ +YG G LL A+ A
Sbjct: 187 VPHLRGKERDRRPGEVLAEVEALVATGAIEVTLLGQNVNSYGVGFGDRGAFAKLLRAVGA 246
Query: 269 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 328
DG +R +P + + IA + P V LH+P+QSGSD VL AM R Y
Sbjct: 247 V---DGLERVRFTSPHPAAFTDDV--IAAMAATPTVMPQLHMPLQSGSDRVLRAMRRSYR 301
Query: 329 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
F ++D + + +P I +DII GFPGET+EDF T+ +++ +F Q+ PRP
Sbjct: 302 AERFLGILDRVRDAIPHAAITSDIIVGFPGETEEDFAATLEVVEASRFASAFTFQYSPRP 361
Query: 389 GIQFLNLDSTELLSLLFSNYKFTVML 414
G +L +++ Y+ V L
Sbjct: 362 GTPAADLPGQLPKAVVQERYERLVAL 387
>gi|292487621|ref|YP_003530493.1| hypothetical protein EAMY_1135 [Erwinia amylovora CFBP1430]
gi|428784556|ref|ZP_19002047.1| UPF0004 protein [Erwinia amylovora ACW56400]
gi|291553040|emb|CBA20085.1| UPF0004 protein PA3980 [Erwinia amylovora CFBP1430]
gi|426276118|gb|EKV53845.1| UPF0004 protein [Erwinia amylovora ACW56400]
Length = 480
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 185/355 (52%), Gaps = 36/355 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 8 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 67
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 68 LLGRWKKLKEANPNLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMIN-SVRG 126
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 127 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 179
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
+R ++P +E +I EV R P + S+LH+PVQSG+D +L+ M R +T +++
Sbjct: 238 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKA 294
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++ L+ P +QI++D I GFPGET DF QT+ L+ E F + + RPG
Sbjct: 295 IIRKLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPG 349
>gi|123966699|ref|YP_001011780.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9515]
gi|229890602|sp|A2BY12.1|MIAB_PROM5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123201065|gb|ABM72673.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9515]
Length = 464
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 180/365 (49%), Gaps = 25/365 (6%)
Query: 45 LSKTGSLSPKIPGTETI---YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
L+KT K P E+I ++ TFGC N++DSE MAG L GY+ + +AD+ L
Sbjct: 2 LTKTIQEEKKTPKDESIGSYWITTFGCQMNKADSERMAGTLEKMGYSRAIDELKADLVLY 61
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKK-----PLVVAGCVPQGS-----RDLKELEGVSIVG 151
NTCT++ +Q + + + + K LVVAGC+ Q R + EL+ I+G
Sbjct: 62 NTCTIRDSAQQKVYSFLGRQIKRKHSLPKLKLVVAGCLAQQEGESLLRRVPELD--LIMG 119
Query: 152 VQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCK 210
Q ++ + ++E G++V + + + D+ RR+ + + I GC C+YC
Sbjct: 120 PQHVNNLENLLERVDSGNQV-VATEETFISEDITNARRDSTICGWVNIIYGCNERCSYCV 178
Query: 211 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLN 264
RG S +++ ++T+ + KE+ L ++ AYGRD+ G L +
Sbjct: 179 VPSVRGKEQSRYPKAIKSEIQTLAQNNYKEITLLGQNIDAYGRDLPVTTKEGRKENTLTD 238
Query: 265 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 324
+ DG +R ++P + + L + L C + H+P QSG+D +L M
Sbjct: 239 LLYFIHDVDGIRRIRFSTSHPKYFSKRLIKACYELDKVCEH--FHIPFQSGNDEILRLMA 296
Query: 325 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 384
R YT+ ++ +++ + L+P I D I FPGET++ + T+ LI + F QV + +
Sbjct: 297 RGYTIDKYKKIIENIRSLMPNASITADAIVAFPGETEKQYQDTLRLISDVGFDQVMTAAY 356
Query: 385 YPRPG 389
PRP
Sbjct: 357 SPRPN 361
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T +E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 168
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 169 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EVRHLAANGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + + +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIPNVVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREG 405
>gi|407716618|ref|YP_006837898.1| MiaB-like tRNA modifying enzyme [Cycloclasticus sp. P1]
gi|407256954|gb|AFT67395.1| MiaB-like tRNA modifying enzyme [Cycloclasticus sp. P1]
Length = 428
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 177/349 (50%), Gaps = 41/349 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KT GC N+++ E A A G+ L + EADI ++NTC V + L+ K
Sbjct: 3 VHLKTLGCRLNEAEIESWANDFVAEGHQLVNQETEADILVLNTCAVTQGAVRKSRQLVRK 62
Query: 121 C--KSAKKPLVVAGCVPQGSRDLKELEGVSIVGV------QQIDRVV-----EVVEETL- 166
K+ + LVV+GC L E E V++ GV QQ D++V E+ EET+
Sbjct: 63 THQKNPRAKLVVSGCYA----TLNEQETVALDGVDLLVNNQQKDQLVTLTLNELSEETMP 118
Query: 167 ----KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 222
+ +EV L R R+ F+++ GC C++C ARG S +
Sbjct: 119 SIATEPNEVALFSRG----------RQRAFIKVQD---GCRYRCSFCIVTIARGDEKSKS 165
Query: 223 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
++S+V + G+ E+ ++ G YG D G NL N + A L +R+G
Sbjct: 166 IDSIVAEANALHQQGISEIVITGVHLGGYGSDTGSNL---YNLVTALLQQTSIPRIRMGS 222
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
P + + E+ ++P + +H+P+QSGSD VL M+R S+FR +V ++
Sbjct: 223 LEP---WDLPQGFLELFKNPRLMPHMHLPIQSGSDTVLKRMSRRCKTSEFRALVLEARKI 279
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+P + I +DII GFPGETD+++ QT++ ++E +F +HI + R G +
Sbjct: 280 MPNINITSDIIVGFPGETDDEWQQTLDFVQEMQFGDLHIFTYSTREGTK 328
>gi|319943047|ref|ZP_08017330.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
51599]
gi|319743589|gb|EFV95993.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lautropia mirabilis ATCC
51599]
Length = 473
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 185/357 (51%), Gaps = 27/357 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
+ +Y++TFGC N DSE MA L+ G LTD+ EADI L NTC+++ +Q + +
Sbjct: 2 SRKLYLRTFGCQMNSYDSERMADLLAETEGAELTDDPNEADIVLFNTCSIREKAQEKVFS 61
Query: 117 LIA---KCKSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK- 167
+ K+A+ L+ V GCV +G + V +V G Q + R+ E+++ +
Sbjct: 62 DLGYFRAMKAARPELIIGVGGCVASQEGEAIVSRAPFVDVVFGPQTLHRLPELIDRRRQT 121
Query: 168 GH---EVRLLHRKKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
GH ++R +K AL P KV + FV I+ GC C++C + RG S
Sbjct: 122 GHSQVDIRFPEIEKFDALPPPRKVGASAFVSIME---GCSKYCSFCVVPYTRGEEISRPF 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVNLPILLNAIVAELPPDGSTML 278
E ++ V T+ GVKEV L ++ AY G D + LL+ I ++P G +
Sbjct: 179 EDVLSDVITLAEQGVKEVTLLGQNVNAYLGQVEGFDAPADFATLLDYI-HDIP--GIERI 235
Query: 279 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 338
R ++P E L + L P + +H+PVQSGSD +L+AM R YT ++R++V
Sbjct: 236 RYTTSHPREFTERLIDAHAQL--PKLAPLVHLPVQSGSDRILAAMKRGYTALEYRSIVRR 293
Query: 339 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
L PG+ + TD I GFPGET+ DF +T+ L ++ + + + PRPG NL
Sbjct: 294 LRAASPGIGLTTDFIVGFPGETEADFLKTLKLAEDLAYDDAYSFIYSPRPGTPAANL 350
>gi|312171728|emb|CBX79986.1| UPF0004 protein PA3980 [Erwinia amylovora ATCC BAA-2158]
Length = 480
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 185/355 (52%), Gaps = 36/355 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +E+AD+ L+NTC+++ +Q +
Sbjct: 8 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEQAEDADVLLLNTCSIREKAQEKVFG 67
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K+ + V GCV +G++ + V IV G Q + R+ E++ +++G
Sbjct: 68 LLGRWKKLKEANPDLIIGVGGCVASQEGAKIRQRASCVDIVFGPQTLHRLPEMIN-SVRG 126
Query: 169 H----------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
E+ R P D P FV I+ GC CT+C + RG
Sbjct: 127 SKSPVVDVSFPEIEKFDRMPEPRADGP----TAFVSIME---GCNKYCTFCVVPYTRGEE 179
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGS 275
S + ++ V + A GV+EV L ++ AY D G+ L +VA + DG
Sbjct: 180 VSRPADDILFEVAQLAAQGVREVNLLGQNVNAYRGATYDGGICSFAELLRLVAAI--DGI 237
Query: 276 TMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 334
+R ++P +E +I EV R P + S+LH+PVQSG+D +L+ M R +T +++
Sbjct: 238 DRIRFTTSHP---IEFTDDIIEVYRDTPELVSYLHLPVQSGADRILTLMKRAHTALEYKA 294
Query: 335 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
++ L+ P +QI++D I GFPGET DF QT+ L+ E F + + RPG
Sbjct: 295 IIRKLLAARPDIQISSDFIIGFPGETQADFEQTMKLVGEINFDTSYSFIYSARPG 349
>gi|366166403|ref|ZP_09466158.1| RNA modification protein [Acetivibrio cellulolyticus CD2]
Length = 438
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 174/334 (52%), Gaps = 14/334 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC NQ ++E + GY + D E AD+++INTCTV + S +I + K
Sbjct: 8 TLGCKVNQYETEAILEMFRNNGYEIVDFEEFADVYVINTCTVTNLSDRKSRQMIRRAKKN 67
Query: 125 KKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKG-HEVRL----LH 175
+ +VVAGC Q S D + + GV++V G + +++E ++ +G ++V L +
Sbjct: 68 NEDSIVVVAGCYAQTSPDEVLSIPGVNLVIGTKDKGKIIENIKSIEEGRNKVNLVQDIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
++ L + +V + + + I GC C+YC +ARG + S VE ++ VR +
Sbjct: 128 TREFEELGV-EVYKERTRAFIKIQEGCSQFCSYCIIPYARGPIRSRPVEYVLDEVRKLAL 186
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 295
+G KE+ L+ +YG+DI I + V E+ DG +R+G P I +
Sbjct: 187 NGYKEIVLTGIHIASYGKDIKTTSLIDIIKKVHEI--DGVERVRLGSIEPTTITHEF--V 242
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
E+ + V H+ +QSG D+ L MNR YT ++R+ + L + + + TD++ G
Sbjct: 243 NEIGKLEKVCPHFHISLQSGCDSTLKRMNRRYTTEEYRSSIALLRSGIKDVAVTTDVMVG 302
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
FPGETDE+FN+TV + E F +H+ ++ R G
Sbjct: 303 FPGETDEEFNETVKFLNEISFSAMHVFKYSQRKG 336
>gi|229092810|ref|ZP_04223948.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
gi|228690608|gb|EEL44389.1| hypothetical protein bcere0021_35610 [Bacillus cereus Rock3-42]
Length = 457
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|153939005|ref|YP_001392232.1| RNA modification protein [Clostridium botulinum F str. Langeland]
gi|384463213|ref|YP_005675808.1| MiaB family RNA modification protein [Clostridium botulinum F str.
230613]
gi|152934901|gb|ABS40399.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
Langeland]
gi|295320230|gb|ADG00608.1| RNA modification enzyme, MiaB family [Clostridium botulinum F str.
230613]
Length = 432
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 21/340 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LLH 175
++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + R +K L I GC C+YC ARG + S E ++ V +
Sbjct: 127 NKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVEKLSK 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 186 HGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDRVEGIERIRIGSIDPTFFTEE--- 240
Query: 295 IAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I TD
Sbjct: 241 --EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
II GFPGET+E+FN+T +++ K ++H+ +F PR G +
Sbjct: 299 IIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTR 338
>gi|170756026|ref|YP_001782588.1| RNA modification protein [Clostridium botulinum B1 str. Okra]
gi|429246269|ref|ZP_19209606.1| RNA modification protein [Clostridium botulinum CFSAN001628]
gi|169121238|gb|ACA45074.1| RNA modification enzyme, MiaB family [Clostridium botulinum B1 str.
Okra]
gi|428756729|gb|EKX79264.1| RNA modification protein [Clostridium botulinum CFSAN001628]
Length = 432
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 177/340 (52%), Gaps = 21/340 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC N ++E M + GY + D +E AD+++INTCTV + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYQIVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVV----EVVEETLKGHEVR-LLH 175
++K + V GC Q ++ +++GV +V G + +V +EE + EV+ +L
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVSKIDGVDVVLGTRNKGDIVYWVNRAMEEKNQVIEVKDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
K+ L++ + R +K L I GC C+YC ARG + S E ++ V +
Sbjct: 127 NKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKIMEEVEKLSK 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 294
G KE+ LS D +YG D+ L +I+ E+ +G +RIG +P F E
Sbjct: 186 HGFKEIILSGIDIASYGFDLEGKYN--LTSILEEIDRVEGIERIRIGSIDPTFFTEE--- 240
Query: 295 IAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
E++R + F H+ +QSG + L MNR+YT+ ++ +V L + + I TD
Sbjct: 241 --EIIRISKLKRFCPHFHLSLQSGCNETLKRMNRKYTVEQYKEIVHNLRTNIESVSITTD 298
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
II GFPGET+E+FN+T +++ K ++H+ +F PR G +
Sbjct: 299 IIVGFPGETEEEFNKTYEFLRDIKLSKMHVFKFSPRKGTR 338
>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
Length = 509
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 176/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|124026430|ref|YP_001015545.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
NATL1A]
gi|229890598|sp|A2C471.1|MIAB_PROM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123961498|gb|ABM76281.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str.
NATL1A]
Length = 463
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 178/364 (48%), Gaps = 25/364 (6%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
L KT K P + ++ TFGC N++DSE M+G L GY + +AD+ L NT
Sbjct: 5 QLQKTNQPPVKAPRG-SYWITTFGCQMNKADSERMSGILEYMGYYPAEEELKADLVLYNT 63
Query: 104 CTVKSPSQSAMDTLIAKCKSAKKPL-----VVAGCVPQ--GSRDLKELEGVSI-VGVQQI 155
CT++ ++ + + + + K+ L VVAGC+ Q G L+ + + + +G Q
Sbjct: 64 CTIRDSAEQKVYSYLGRQAIRKRSLPNLKIVVAGCLAQQEGESLLRRVPEIDLLMGPQHC 123
Query: 156 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHA 214
+R+ ++ + G +V L ++ D+ RR+ F + I GC CTYC
Sbjct: 124 NRLESLLNQVDSGQQV-LATEEQFILEDITTPRRDSSFCGWVNIIYGCNERCTYCVVPSV 182
Query: 215 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNA 265
RG S T E++ V + G KE+ L ++ AYGRD + L LL
Sbjct: 183 RGKEQSRTPEAIKSEVEDLAKSGYKEITLLGQNIDAYGRDFQSQNKEASAQITLSYLLKY 242
Query: 266 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 325
I +G +R ++P + + L + L P V H+P QSGS+ +L M R
Sbjct: 243 I---HDIEGIERIRFATSHPRYFTKELIDTCSEL--PKVCEHFHIPFQSGSNKILKNMGR 297
Query: 326 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 385
YT+ ++ +++ + +P I+ D I FPGE++ D+ QT++LI E KF V+ + +
Sbjct: 298 GYTIESYKNIINYIKSKIPKAAISGDAIVAFPGESETDYEQTLSLIDEIKFDHVNTAAYS 357
Query: 386 PRPG 389
PRP
Sbjct: 358 PRPN 361
>gi|434403030|ref|YP_007145915.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cylindrospermum stagnale PCC 7417]
gi|428257285|gb|AFZ23235.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Cylindrospermum stagnale PCC 7417]
Length = 454
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 26/347 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
++ TFGC N++DSE MAG L G+ +++ A++ L NTCT++ ++ + + + +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNLANVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 122 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K L+VAGCV Q G L+ + + +V G Q +R+ +++E G+++
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLESVFDGNQIVA 128
Query: 174 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIIE-DITKPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 283
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGKLGYKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244
Query: 284 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTQEKYRRIIDTVRRY 301
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPG
Sbjct: 302 MPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPG 348
>gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
Length = 434
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 176/345 (51%), Gaps = 23/345 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
++ ++++T GC+ N DSE+M QL GY T N E+AD+ LINTC+V+ + +
Sbjct: 2 SKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLFS 61
Query: 117 LIAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
+ K KKP + V GC G +K V+ V G + + ++ EV+ + K E
Sbjct: 62 ELGGFKKRKKPSAKIGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLHKD-KAVE 120
Query: 171 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + + + A D R + + + I++GC CTYC RG S + ++
Sbjct: 121 IDINYDESEFAFD--DFRTSSYKAYINISIGCDKQCTYCIVPKTRGDEISIPDDLIINEA 178
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTN 284
+ + +G KE++L ++ YGR VN LL + + RI T+
Sbjct: 179 KRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRL-----SKIEGLERIRFTS 233
Query: 285 P-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P PF ++ + I E ++P + +H+P+QSGS VL M R YT F V L +
Sbjct: 234 PHPFHMDD-EFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRVQKLRSVC 292
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
P + I+TDII FPGE+DEDF T++++K+ KF Q+ ++ PRP
Sbjct: 293 PDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRP 337
>gi|421588190|ref|ZP_16033506.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
Pop5]
gi|403707160|gb|EJZ22237.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rhizobium sp.
Pop5]
Length = 469
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 180/356 (50%), Gaps = 31/356 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ +++KT+GC N DS M+ L+ GY T++ EEAD+ L+NTC ++ + + +
Sbjct: 21 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDLEEADLVLLNTCHIREKAAEKVYSA 80
Query: 118 IAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ + + KK + VAGCV Q G L+ V +V G Q R+ E + +
Sbjct: 81 LGRLREMKKKKAADGREMMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRQA 140
Query: 166 LKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+G V + H LP + K+R L + GC CT+C + RG
Sbjct: 141 KQGRRVVDTEYAIEDKFEH---LPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRG 197
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAI--VAELPPD 273
S V +V ++ GV+E+ L ++ A+ G G L + + +AE+P
Sbjct: 198 SEVSRPVSQIVEEAEKLVEGGVREITLLGQNVNAWHGAGPGGEAWSLGDLLYRLAEIP-- 255
Query: 274 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
G LR ++P + + L + LR + +LH+PVQSGSD +L AMNR +T +++
Sbjct: 256 GLARLRYTTSHPRDMDDRLIDAHRDLR--ALMPYLHLPVQSGSDRILKAMNRRHTAAEYL 313
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
T+++ + + P + ++ D I GFPGETDEDF T+ L++E ++ Q ++ RPG
Sbjct: 314 TLIERIRTVRPDIALSGDFITGFPGETDEDFADTLRLVEEVRYAQAFSFKYSTRPG 369
>gi|334340539|ref|YP_004545519.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
gi|334091893|gb|AEG60233.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
Length = 449
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 175/343 (51%), Gaps = 27/343 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
TFGC N+ DSE ++G L GY+ T++ E+ADI ++NTC V+ ++S + L+ + +
Sbjct: 12 TFGCQMNERDSESLSGMLEDLGYSPTESQEDADIIILNTCCVRETAESKVFGLLGRLRKR 71
Query: 125 KKP-----LVVAGCVPQGSRDLKELEG----VSIV----GVQQIDRVVEVVEETLKGHEV 171
K + V GC+ Q K + V ++ V ++ R+++ V+E K +
Sbjct: 72 KTANPNLIIGVCGCMTQQEDAAKRIRHSFPFVDLIFGTHNVHELPRMLQQVQEN-KEAVL 130
Query: 172 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ +K A D+P R++K + I GC C+YC + RG S E + ++
Sbjct: 131 EIWTSEKGIAEDVPVRRKDKLKAWVTIMYGCNNFCSYCIVPYVRGRERSRKPEDIFKEIK 190
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ +G KEV L ++ +YG+D+ +L + L+ I +G +R ++P
Sbjct: 191 ELVKEGYKEVTLLGQNVNSYGKDLENTYRFADLLLDLDQI------EGLERIRFMTSHPR 244
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
L ++ R C + H+PVQ+GS+ VL MNR YT + ++ + VPG
Sbjct: 245 DFDRRLIQVIASCRKVCEH--YHLPVQAGSNRVLKQMNRGYTREHYLELIREIRRAVPGA 302
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I DI+ GFPGET+EDF QT++L+++ +F + R G
Sbjct: 303 SITADIMVGFPGETEEDFEQTLDLVQQVRFDSAFTFIYNTRSG 345
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPSAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|429759405|ref|ZP_19291904.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
gi|429179681|gb|EKY20920.1| tRNA methylthiotransferase YqeV [Veillonella atypica KON]
Length = 435
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 12/340 (3%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T+ T GC NQ D++ M G Y D +ADI++INTC+V + + LI
Sbjct: 6 KTVAFTTLGCRVNQYDTDAMKGLFLQHDYEAVDFDSKADIYVINTCSVTNMGEKKSRQLI 65
Query: 119 AKCKSAKKP--LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE----TLKGHE 170
K K + ++V GC Q D + ++GV++V G ++VE+VE+ + +
Sbjct: 66 RKAKRQNQDAYVIVTGCYAQLDPDAIAAIDGVNLVIGTNNRSKIVELVEQLETTERQINA 125
Query: 171 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
VR ++ + L +K + I GC C +C + RG L S V +V
Sbjct: 126 VRDIMKESNFEEMPLFGNESDKSRAFMKIQEGCNNYCAFCIIPYTRGKLKSRKVADIVNE 185
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G E+ L+ G YG ++ P L + + A L +R G +
Sbjct: 186 AKRLVEHGFHEIVLTGIHLGNYGVELP-GRPTLADVVKALLEIPNLHRIRFGSIESVEVS 244
Query: 290 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 349
+ L E+ + C + LH+P+Q+GSD VL+ M R YTL +++ ++ L +P + I
Sbjct: 245 DELIELMATDKRVCPH--LHLPLQAGSDHVLTLMKRHYTLQEYKDLIKNLRNRIPDLSIT 302
Query: 350 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDEDF++T+N +KE F +H + R G
Sbjct: 303 TDIIAGFPQETDEDFDETMNTVKEIGFTHIHAFPYSIREG 342
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
Length = 442
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 23/344 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
+++T+GC N+ DSE +AG L GY D +AD+ ++NTC V+ ++ + + +
Sbjct: 8 FIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEI 67
Query: 122 KSAKKP---LVVA--GCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 170
K KK L+V GC+ Q + +++ V IV G I R E+++E ++
Sbjct: 68 KQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQS 127
Query: 171 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
V + + D+P R + I GC CTYC + RG S + E ++
Sbjct: 128 LVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKE 187
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNP 285
++ ++ADGVKEV L ++ +YG+D+G +L LL A+ + LP +R ++P
Sbjct: 188 IKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHP 242
Query: 286 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 345
+ L E L + C + H+P+QSGSD +L MNR YT ++ +V L P
Sbjct: 243 RDFSDKLIEAVTNLENVCEH--FHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPK 300
Query: 346 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I+TD+I GFPGET+EDF +T+ L K+ +F + + R G
Sbjct: 301 AAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTG 344
>gi|404492825|ref|YP_006716931.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Pelobacter
carbinolicus DSM 2380]
gi|123756643|sp|Q3A594.1|MIAB_PELCD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77544901|gb|ABA88463.1| tRNA (2-methylthio-N6-dimethylallyl-A37) methylthiotransferase
[Pelobacter carbinolicus DSM 2380]
Length = 438
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 188/354 (53%), Gaps = 25/354 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
++ Y++TFGC N DSE + G + + GY+ D+ E+A++ ++NTC++++ ++ + +
Sbjct: 2 KSFYLETFGCQMNVVDSEQIVGLVQSLGYSSVDSPEQANLIILNTCSIRARAERKVYGHL 61
Query: 119 AKCKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET----L 166
+ K K+ + V GCV Q G R L+++ + IV G I R+ ++V +
Sbjct: 62 GRFKPLKQRRPELIIAVCGCVAQQEGQRMLEKVPYLDIVCGTHNIHRLADMVRDAELHRA 121
Query: 167 KGHEVRLLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
+ EV L R++L P ++FV ++ GC C+YC H RG S
Sbjct: 122 RHVEVDFLEADKRRRLFPERAPSAEVSRFVTVIQ---GCDNFCSYCIVPHVRGREVSRPS 178
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIG 281
++ VR ++ G +E+ L ++ +YG D ++ LL VAE+ DG +R
Sbjct: 179 AEVLEEVRLLVEQGAREITLIGQNVNSYGCKEDDEISFASLLRK-VAEV--DGLERIRFM 235
Query: 282 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P + + L + L C + +H+PVQ+G DAVL AM R YT + ++ L
Sbjct: 236 TSHPKDLSDELIDCFADLDKLCKH--IHLPVQAGGDAVLKAMRRGYTRDQYLGRIERLRR 293
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
+ P +++ +D+I GFPGET+ +F QT++L++ +F +++ F RPG +L
Sbjct: 294 VCPEIRMTSDVIVGFPGETESEFEQTMDLLERARFTEIYSFIFSARPGTSAADL 347
>gi|398791906|ref|ZP_10552604.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. YR343]
gi|398214038|gb|EJN00621.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pantoea sp. YR343]
Length = 474
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 24/360 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLNSTHGYTLTEEAEEADVLLLNTCSIREKAQEKVFA 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
L+ + K K + V GCV +G R + V IV G Q + R+ E++ T++G
Sbjct: 62 LLGRWKKLKATNPDLIIGVGGCVASQEGERLRQRASYVDIVFGPQTLHRLPEMIN-TVRG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ ++ P ++ LP+ R + + I GC CT+C + RG S +
Sbjct: 121 SKSPVVD-ISFPEIEKFDRLPEPRADGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPSD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
++ + + A GV+EV L ++ AY G ++ + DG +R +
Sbjct: 180 DILLEIAQLAAQGVREVNLLGQNVNAYRGATFDGDICTFAELLRLVAAIDGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P +E +I EV R P + SFLH+PVQSGSD +L+ M R +T +++ ++ L
Sbjct: 240 HP---IEFTDDIIEVYRDTPELASFLHLPVQSGSDRILTLMKRAHTALEYKAIIRKLKAA 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP-RPGIQFLNL--DSTE 399
P +Q+++D I GFPGET +DF QT+ L+ E F V S Y RPG +L D TE
Sbjct: 297 RPDIQLSSDFIIGFPGETQQDFEQTMKLVGEVNF-DVSFSFIYSMRPGTPAADLPDDVTE 355
>gi|332526540|ref|ZP_08402652.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
benzoatilyticus JA2]
gi|332110808|gb|EGJ10985.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Rubrivivax
benzoatilyticus JA2]
Length = 444
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 181/352 (51%), Gaps = 23/352 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DS MA L+A G Y TD+ E+AD+ L NTC+V+ +Q + + +
Sbjct: 4 VYIRTFGCQMNEYDSAKMADVLNAAGGYEPTDDPEQADLVLFNTCSVREKAQEKVFSDLG 63
Query: 120 KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
+ K KK V V GCV +G+ ++ V +V G Q + R+ +++ + +E R
Sbjct: 64 RVKHLKKKGVLIGVGGCVASQEGAAIIERAPYVDMVFGPQTLHRLPQMI--AARSNERRP 121
Query: 174 LHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
P ++ LP R + I GC CTYC + RG S E ++
Sbjct: 122 QVDISFPEIEKFDHLPPPRIEGASAFVSIMEGCSKYCTYCVVPYTRGEEVSRPFEDVLTE 181
Query: 230 VRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTN 284
V + GVKEV L ++ AY +G +L +LL VAE+P G +R ++
Sbjct: 182 VADLADRGVKEVTLLGQNVNAYRGAMGESGEIADLALLLE-YVAEVP--GIERIRFTTSH 238
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + L I R P + S LH+PVQ GSD +LSAM R YT ++++ + L E P
Sbjct: 239 PNEFTQRL--IEAYGRIPKLVSHLHLPVQHGSDRILSAMKRGYTALEYKSTIRKLREQRP 296
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
G+ +++D I GFPGET++DF +T+ LI + + + RPG LD
Sbjct: 297 GISLSSDFIVGFPGETEDDFAKTMKLIDDVGYDASFSFVYSQRPGTPAAALD 348
>gi|330838436|ref|YP_004413016.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
35185]
gi|329746200|gb|AEB99556.1| RNA modification enzyme, MiaB family [Selenomonas sputigena ATCC
35185]
Length = 432
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 172/339 (50%), Gaps = 20/339 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK 122
+ T GC NQ ++E M G GYA+ E AD+++INTC+V S + LI + +
Sbjct: 6 LTTLGCKVNQFETETMEGLFRQRGYAIVPFDEAADVYVINTCSVTSLGEKKSRQLIRRAR 65
Query: 123 SAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RL 173
+ V+A GC Q +++ +EGV +V G ++ +V+ VE + V +
Sbjct: 66 RLNERAVIAVTGCYAQVAPEEIRSIEGVRVVLGTKERAAIVDHVERAAREAGVFDGTGDI 125
Query: 174 LHRKK---LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+H + +P P R L I GC C++C +ARG + S ++S+
Sbjct: 126 MHASEFEDIPLFGAPARTRA----FLKIEEGCENFCSFCIIPYARGPVRSRLLKSVRREA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A G KE+ L+ G YGRD+G L +A+ A L G LR+G I
Sbjct: 182 AKLLAMGFKEIVLTGIHLGCYGRDLGD--VTLADAVRAVLSLPGLKRLRLGSLES--IEL 237
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+A + + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I+T
Sbjct: 238 SDDLLALLAQEERFAGHLHLPLQAGSDEVLRAMNRHYDTAKFAALIERVERAVPGVAIST 297
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGET E F +++ ++ F ++H+ + PR G
Sbjct: 298 DIIVGFPGETQELFEESLAFVERMNFARMHVFPYSPRRG 336
>gi|224476428|ref|YP_002634034.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222421035|emb|CAL27849.1| putative radical SAM superfamily protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 513
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 177/342 (51%), Gaps = 15/342 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T ++KTFGC N D+E MAG A GY L ++ +AD+ L+NTC ++ +++ + + I
Sbjct: 68 TFFIKTFGCQMNAHDTEVMAGIFEALGYTLAEDILKADVILLNTCAIRENAENKVFSEIG 127
Query: 120 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 167
K K+ + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYMSK 187
Query: 168 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
+ + ++ +LPKVR + F + I GC CTYC RG S + ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 247
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 287
VR + G +E+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 DEVRDLARQGYQEITLLGQNVNSYGKDLK-DIEYDLGDLFEDISKIDIPRVRFTTSHPWD 306
Query: 288 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 347
+H+ ++ + + + +H+PVQSG+DAVL M R+YT + +V+ + +P +
Sbjct: 307 FTDHMIDV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKTAIPDVA 364
Query: 348 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII G+P ET+E F +T++L E +F + + R G
Sbjct: 365 LTTDIIVGYPNETEEQFQETLSLYDEVEFEHAYTYLYSQRDG 406
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|154249151|ref|YP_001409976.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Fervidobacterium nodosum Rt17-B1]
gi|229890533|sp|A7HK86.1|MIAB_FERNB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154153087|gb|ABS60319.1| RNA modification enzyme, MiaB family [Fervidobacterium nodosum
Rt17-B1]
Length = 430
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 181/337 (53%), Gaps = 17/337 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++ T+GC N++DSE + L G LTD+ +AD+ ++NTC V+ S+ + + I K
Sbjct: 3 VHIFTYGCQMNENDSEIVKQLLKDEGIELTDDENDADVVILNTCAVRKKSEEKVYSHIGK 62
Query: 121 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 179
+ K + + GCV + ++ GVS ++G + + +V + V G++ ++ L
Sbjct: 63 LRKKGKKIGIMGCVAEKEKENLFKRGVSFVIGTRALTKVPDAVLNAKNGNK-QIYLEDTL 121
Query: 180 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 237
++ KV R + + I GC CTYC + RG S ++ ++ V ++ G
Sbjct: 122 DEIEYHKVETRSSNHHAWVTIIHGCDRFCTYCIVPYTRGREKSRPIDEVLKEVESLSQRG 181
Query: 238 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG-MTNPP--FILEHL 292
KE ++ AYG+D+ G +L LL +L + R+ +T+ P F LE
Sbjct: 182 YKEFTFLGQNVDAYGKDLRDGTSLAKLL-----KLASQIDNVKRLWFLTSYPTDFSLEIP 236
Query: 293 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 352
K + E + V +H+PVQ GSD +L AMNR YT ++ +++ + ++VP I++DI
Sbjct: 237 KVMLESEK---VARSIHLPVQHGSDKILKAMNRRYTRQEYIDLINEIRKIVPDASISSDI 293
Query: 353 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
I GFPGE DEDF TV L+K KF +++++ + PR G
Sbjct: 294 IVGFPGENDEDFEATVELVKLLKFERLNLAVYSPREG 330
>gi|417110239|ref|ZP_11963574.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CNPAF512]
gi|327188593|gb|EGE55803.1| putative 2-methylthioadenine synthetase (miaB-like) protein
[Rhizobium etli CNPAF512]
Length = 482
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 177/357 (49%), Gaps = 33/357 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ +++KT+GC N DS M+ L+ GY T++ EEAD+ L+NTC ++ + + +
Sbjct: 34 SRKVFIKTYGCQMNVYDSTRMSDALARDGYEPTEDMEEADLVLLNTCHIREKAAEKVYSA 93
Query: 118 IAKCKSAKKP---------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET 165
+ + + KK + V GCV Q G L+ V +V G Q R+ E +
Sbjct: 94 LGRLREMKKKKAADGREMMIGVTGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPEALRRA 153
Query: 166 LKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+G V + H LP + K+R L + GC CT+C + RG
Sbjct: 154 QQGQRVVDTEYAIEDKFEH---LPIAESRKIRARGVTAFLTVQEGCDKFCTFCVVPYTRG 210
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG----RDIGVNLPILLNAIVAELPP 272
S V +V ++ GV+E+ L ++ A+ R +L LL + AE+P
Sbjct: 211 SEVSRPVSQIVEEAEKLVEAGVREITLLGQNVNAWHGAGPRGEAWSLGDLLYRL-AEIP- 268
Query: 273 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 332
G LR ++P + + L E LR + +LH+PVQSGSD +L AMNR +T +++
Sbjct: 269 -GLARLRYTTSHPRDMDDRLIEAHRDLR--ALMPYLHLPVQSGSDRILKAMNRRHTAAEY 325
Query: 333 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+++D + + P + ++ D I GFPGETD DF T+ L++E ++ Q ++ RPG
Sbjct: 326 LSLIDRIRTVRPDIALSGDFITGFPGETDADFEDTLRLVEEVRYAQAFSFKYSTRPG 382
>gi|421481719|ref|ZP_15929302.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Achromobacter
piechaudii HLE]
gi|400200034|gb|EJO32987.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Achromobacter
piechaudii HLE]
Length = 482
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 26/369 (7%)
Query: 43 NHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLI 101
+ L TG+ SP+ +Y++TFGC N+ DS+ MA L G LTDN EEAD+ L
Sbjct: 23 DALENTGAGSPR-----KLYIRTFGCQMNEYDSDKMADVLRGDQGLELTDNPEEADVILF 77
Query: 102 NTCTVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQ 153
NTC+V+ +Q + + + + + KK + V GCV +G+ +K V +V G Q
Sbjct: 78 NTCSVREKAQEKVFSDLGRVQHLKKTNPNLVIGVGGCVASQEGAAIVKRAPYVDVVFGPQ 137
Query: 154 QIDRVVEVV-EETLKGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKT 211
+ R+ +++ +G + ++ D +P R + + I GC C++C
Sbjct: 138 TLHRLPDLIARRRAEGRSQVDISFPEIEKFDNMPPPRVDGATAFVSIMEGCSKYCSFCVV 197
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-----GRDIGVNLPILLNAI 266
+ RG S E ++ V + GVKEV L ++ AY G D + +LL
Sbjct: 198 PYTRGEEVSRPFEDVLVEVADLADQGVKEVTLLGQNVNAYRGKMEGTDDIADFAMLLE-Y 256
Query: 267 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
V E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+ M R
Sbjct: 257 VHEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAGMKRG 312
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
YT +F++VV L P + +++D I GFPGET+EDF +T+ LI++ F +
Sbjct: 313 YTTLEFKSVVRRLRAARPDLTLSSDFIVGFPGETEEDFEKTMKLIEDVGFDTSFSFVYSR 372
Query: 387 RPGIQFLNL 395
RPG +L
Sbjct: 373 RPGTPAADL 381
>gi|451811988|ref|YP_007448442.1| bifunctional tRNA thiolation and methylation protein [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451777890|gb|AGF48838.1| bifunctional tRNA thiolation and methylation protein [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 478
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 189/356 (53%), Gaps = 27/356 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINTCTVKSPSQSAMDTL 117
+ IY+KTFGC N DS+ + L +GY ++T+N EEAD+ L NTC+V+ +Q + +
Sbjct: 41 KKIYIKTFGCQMNTYDSDKIIEILYKYGYTSVTNNPEEADLILFNTCSVREKAQEKVFSD 100
Query: 118 IAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 169
+ + K K+ + V GCV +G L V IV G Q + R+ +++++ +
Sbjct: 101 LGRAKILKQENPNIIIGVGGCVASQEGHEILNRAPYVDIVFGPQTLHRLPDLIDKKINEG 160
Query: 170 ----EVRLLHRKKLPALDLP-KVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 223
++ +K ++ P KV R FV I+ GC C++C + RG S
Sbjct: 161 KPQIDISFPEIEKFDSMSPPSKVERPTAFVSIME---GCSKYCSFCVVPYTRGTEVSRPF 217
Query: 224 ESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAI--VAELPPDGSTMLRI 280
E ++ + + +G+KEV L ++ AY G+ I ++ + V E+P G +R
Sbjct: 218 EDILIEIADLANNGIKEVTLLGQNVNAYLGKTIDGSMSDFAKLLEYVHEIP--GIERIRY 275
Query: 281 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
++P E K IA + P + SF+H+PVQSGSD +LSAM R YT ++++V+ L
Sbjct: 276 TTSHP---REMTKRIANAYANLPKLVSFVHLPVQSGSDRILSAMKRGYTSIEYKSVIRKL 332
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
E PG+ +++D I GFPGET+ DF +T++LI+E F + RPG NL
Sbjct: 333 RESRPGLSVSSDFIVGFPGETENDFRKTISLIEEIGFDTAFSFIYSRRPGTPASNL 388
>gi|395783564|ref|ZP_10463413.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella melophagi K-2C]
gi|395425686|gb|EJF91846.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella melophagi K-2C]
Length = 458
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 183/367 (49%), Gaps = 31/367 (8%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
HL T S+S ++ +++KT+GC N DS+ M+ LSA GY T +AD+ L+NT
Sbjct: 5 HLKNTLSIS-----SQKVFIKTYGCQMNTYDSQRMSDSLSAEGYVTTQTPNDADLILVNT 59
Query: 104 CTVKSPSQSAMDT------LIAKCKSAKKPLV--VAGCVPQGSRD--LKELEGVS-IVGV 152
C ++ + + + +I + +++ KPL+ V GCV Q D L+ V IVG
Sbjct: 60 CHIREKAAEKLYSDLGRLRMIRQKRASDKPLIIGVTGCVAQAEGDEILRRAPTVDLIVGP 119
Query: 153 QQIDRVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCL 203
Q R+ E++++ +G ++ + H LP + V++ L I GC
Sbjct: 120 QMYHRLPELLKQAKQGKKIVETNYAVEDKFTH---LPPHNKHAVQKRGVSAFLTIQEGCD 176
Query: 204 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED-TGAYGRDIGVNLPIL 262
CT+C + RG S VE + +I GVKE+ L ++ G +G+ L
Sbjct: 177 KFCTFCVVPYTRGAETSRPVEQITHEAIQLIEAGVKEITLLGQNVNGWHGQSANGKTWRL 236
Query: 263 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 322
+ + DG LR ++P + + L IA + +LH+P+QSGSD +L A
Sbjct: 237 GDLLYHLAKLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDMLMPYLHLPIQSGSDRILKA 294
Query: 323 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 382
MNR++ + +++ + P + + D I GFPGETDEDF +T+ LIK+ + +
Sbjct: 295 MNRQHKSIHYLRLIEKIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVGYSSAYSF 354
Query: 383 QFYPRPG 389
++ PRPG
Sbjct: 355 KYSPRPG 361
>gi|404495733|ref|YP_006719839.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|418066379|ref|ZP_12703743.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
gi|78193349|gb|ABB31116.1| tRNA (2-methylthio-N6-threonylcarbamyl-A37) methylthiotransferase
[Geobacter metallireducens GS-15]
gi|373560640|gb|EHP86897.1| RNA modification enzyme, MiaB family [Geobacter metallireducens
RCH3]
Length = 431
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 174/350 (49%), Gaps = 21/350 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDT 116
+ + + T GC NQ +S M L G+ + E+ADI++INTCTV K+ ++S
Sbjct: 2 QRVAISTLGCKINQFESAAMTESLGREGFRVVPFDEDADIYVINTCTVTAKTDAESRRLI 61
Query: 117 LIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 173
A ++ +VV GC Q + D +K+L GV+ +VG + + E++ + +V +
Sbjct: 62 RRALRRNPAARVVVTGCYAQVAPDAVKDLPGVALVVGNSEKRSIGELLRDAAPAEKVMVS 121
Query: 174 -LHRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
+ R++ +R F E L + GC C+YC +ARG S + +
Sbjct: 122 DISRERTA----EGLRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSFSEALA 177
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
+R A G +EV L+ GAYG D+ NL LL A AE LR+G P
Sbjct: 178 GIRNFAAQGFREVVLTGIHLGAYGLDLAPPTNLLALLEASEAE---KAVPRLRVGSVEPN 234
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + L + + R V LH+P+QSG D VL M R YT + FR V+ L+ +VP +
Sbjct: 235 ELTDALVDF--LARSETVCPHLHIPLQSGDDRVLERMGRRYTAAFFRERVERLVAVVPDI 292
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
I D+I GFPGETDE+F TV LI+E +H+ + R G ++
Sbjct: 293 FIGCDVIAGFPGETDEEFQNTVRLIEELPVASLHVFPYSRREGTAAARME 342
>gi|315497214|ref|YP_004086018.1| MiaB family RNA modification protein [Asticcacaulis excentricus CB
48]
gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
48]
Length = 470
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 32/377 (8%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
K + + H + +S+T S + K +++KT+GC N DSE MA L GYA++D +
Sbjct: 5 EKGRLKPHKHRMSETASAASK-----KLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQA 59
Query: 94 EEADIWLINTCTVKSPSQSAMDTLIAKCK----------SAKKPLVVAGCVPQ--GSRDL 141
E AD+ L+NTC ++ + + + I + K + + VAGCV Q G +
Sbjct: 60 EGADLVLLNTCHIREKAAEKVYSEIGRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIM 119
Query: 142 KELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLH----RKKLPALDLPKVRRNKFVEIL 196
V +VG Q ++ E++ T + RL K AL + + + L
Sbjct: 120 NRAPAVDLVVGPQAYHQLPELIARTTRAKGERLKADFAPEDKFDALSTER-QASGPTAFL 178
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDI 255
+ GC CT+C + RG S V S++ R++ + GV+E+ L ++ AY GR+
Sbjct: 179 TVQEGCDKFCTFCVVPYTRGAEWSRPVASILEEARSLASKGVREITLLGQNVNAYNGREA 238
Query: 256 G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 312
LP L+ A+ +E+ +G +R ++P + + L I +P V +LH+PV
Sbjct: 239 DGEESTLPRLMQAL-SEI--EGLDRIRYTTSHPNDMTDEL--IRAHAENPAVMPYLHLPV 293
Query: 313 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 372
QSGSD +L AMNR++ + ++ L VP + ++ D I GFPGET++DF T++LI+
Sbjct: 294 QSGSDKILRAMNRKHGRQAYIDLIARLKAAVPNIALSGDFIVGFPGETEKDFEDTMDLIR 353
Query: 373 EYKFPQVHISQFYPRPG 389
+ ++ RPG
Sbjct: 354 TVGYASAFSFKYSKRPG 370
>gi|149186041|ref|ZP_01864355.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
gi|148830072|gb|EDL48509.1| 2-methylthioadenine synthetase [Erythrobacter sp. SD-21]
Length = 449
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 174/352 (49%), Gaps = 19/352 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +K+FGC N D E MA L G EEAD+ ++NTC ++ + + + I
Sbjct: 8 KTYRVKSFGCQMNVYDGERMAEMLGEQGIVPAPEGEEADLVVLNTCHIREKAAEKVYSDI 67
Query: 119 AKC-----KSAKKPLV-VAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH 169
+ K+ K+PL+ VAGCV Q G +K VS +VG Q R+ E++++ +KG
Sbjct: 68 GRLAKAGRKAGKEPLIAVAGCVAQAEGEEIMKRSPAVSMVVGPQAYHRLPEMLDKAVKGE 127
Query: 170 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
+PA+ LP+ RR L + GC CTYC + RG S
Sbjct: 128 RA---TDTDMPAIAKFAALPERRRTNPASFLTVQEGCDKFCTYCVVPYTRGAEISRPYAD 184
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 284
LV + ++ G KE+ L ++ A+ + + L ++ +L DG +R ++
Sbjct: 185 LVTEAKKLVDAGAKEITLLGQNVSAWSGEDEKGHRVGLAGLIRDLAKVDGLARIRYTTSH 244
Query: 285 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
P + + L IA + FLH+PVQ+GSD VL AMNR +T + ++D P
Sbjct: 245 PADMDDDL--IAAHGEIDKLMPFLHLPVQAGSDRVLKAMNRSHTAESYLKLLDRFRAARP 302
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
+ ++ D I GFPGETD +F +T+ L+ E ++ Q ++ PRPG +D
Sbjct: 303 DLALSGDFIVGFPGETDAEFEETLALVDEVRYAQAFSFKYSPRPGTPAATMD 354
>gi|312113950|ref|YP_004011546.1| RNA modification protein, MiaB family [Rhodomicrobium vannielii
ATCC 17100]
gi|311219079|gb|ADP70447.1| RNA modification enzyme, MiaB family [Rhodomicrobium vannielii ATCC
17100]
Length = 469
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 176/349 (50%), Gaps = 26/349 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
+++KTFGC N DSE MA L A G+ T E+AD+ ++NTC ++ + + + + +
Sbjct: 24 VFIKTFGCQMNVYDSERMADALGAAGFVETGAPEDADLVILNTCHIREKAAEKVFSELGR 83
Query: 121 CKSAKKP----------LVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKG 168
+ ++ + VAGCV Q ++ V I VG Q R+ E++E
Sbjct: 84 LRVLREARRQDGGGNLMIAVAGCVAQAEGEEIARRAAVDIIVGPQSYHRLPELIERRAST 143
Query: 169 H----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
E +K +L PK+R L + GC CT+C + RG S V
Sbjct: 144 RGPVIETEFPAAEKFASLPAPKLRAAPSA-FLTVQEGCDKFCTFCVVPYTRGAEYSRPVA 202
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGSTMLRI 280
++ + + GV+E+ L ++ A+ + LP LL A+ +E+ +G LR
Sbjct: 203 QIIEEAKRLAERGVREITLLGQNVNAWAGEGPSGKTWTLPDLLAAL-SEV--NGIARLRF 259
Query: 281 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 340
++P + + L IA P + +LH+P QSGSD +L AMNR++ + D+ +V L
Sbjct: 260 TTSHPNDMSDAL--IAAHRDLPKLMPYLHLPFQSGSDRILKAMNRKHRMEDYLRIVHRLR 317
Query: 341 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ P + ++TDII GFPGETD DF +T+ +++ F Q + ++ PRPG
Sbjct: 318 DARPDLALSTDIIVGFPGETDADFEETMRMVERVHFAQAYSFKYSPRPG 366
>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
Length = 511
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 173/341 (50%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMD----- 115
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NTC ++ +++ +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 116 TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL I + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHL--IKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII G+P ET+E F +T++L ++ F + PR G
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREG 403
>gi|410668430|ref|YP_006920801.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
gi|409106177|gb|AFV12302.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
Length = 461
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 172/346 (49%), Gaps = 30/346 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC NQ ++ + G+ + D ++AD+++INTC V + +I + +
Sbjct: 22 TLGCKVNQQETASLMKLFRKRGFRVVDFKKDADVYIINTCAVTHTAAQKCRQVIRRAIGR 81
Query: 123 SAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR-------- 172
S + V GC Q + ++ + GV +VG R+VE+V E ++
Sbjct: 82 SPAAVVAVLGCYSQVAAEEVLSIPGVDLVVGTSGRSRLVELVSEAMEKKRSGEWPAKGIN 141
Query: 173 -------LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 225
L ++LP D P+ R L I GC CTYC +ARG + S +
Sbjct: 142 AVEALDGSLDFEQLPLPDDPRRTRA----FLKIEDGCDQFCTYCTVPYARGGVRSLHPDL 197
Query: 226 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMT 283
+ R+ ++ G +EV L+ T AYG+D+G VNLP LL +V ELP G+ +R+
Sbjct: 198 VQERLSELVCAGYREVVLTGVHTSAYGKDLGGGVNLPRLLRELV-ELP--GNFRIRLSSV 254
Query: 284 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P + E L E+ P + LH+P+QSG D +L MNR YT ++R + E++
Sbjct: 255 EPAEVTEELLELLAT--SPRLCRHLHIPLQSGDDEILCRMNRPYTAEEYRKLFHLAREMI 312
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
PG+ I TD++ GFPGE + F T NLI F +H+ ++ PRPG
Sbjct: 313 PGIAITTDVLVGFPGEEERHFQNTFNLIATLPFRDLHVFKYSPRPG 358
>gi|295696236|ref|YP_003589474.1| MiaB family RNA modification protein [Kyrpidia tusciae DSM 2912]
gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Kyrpidia tusciae DSM 2912]
Length = 484
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 174/350 (49%), Gaps = 18/350 (5%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQS 112
P + + +++T+GC N+ DSE MAG L GY EEAD+ L NTC V+ ++
Sbjct: 35 PAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVRENAED 94
Query: 113 AMDTLIAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 162
+ I + K K+ L + GC+ Q + + + + G + ++ E+V
Sbjct: 95 KVFGEIGRIKPLKRRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTHNLHQLPELV 154
Query: 163 EETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 220
+ + E + R +LPK+R++ + I GC CTYC RG S
Sbjct: 155 VQAMASQETVFAVWDRPGQVVENLPKLRQDGVKAWVNIQYGCNKYCTYCIVPFTRGRERS 214
Query: 221 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLR 279
E +V V+ + +G++EV L ++ YG D+G V+ LL VA +P G +R
Sbjct: 215 RLPEDVVAEVKQLAEEGIREVTLLGQNVNDYGLDLGDVDFADLLQQ-VARIP--GIERVR 271
Query: 280 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 339
+NP + L ++ C + +H+PVQSG++ +L MNR YT + +V+ +
Sbjct: 272 FTTSNPWNFTDKLIDVIAAEEAICEH--IHLPVQSGNNRILKRMNRGYTRETYLQLVERI 329
Query: 340 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +PG+ + TDII GFPGET+E+F T++L++ +F + R G
Sbjct: 330 RDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRRQG 379
>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
Length = 509
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKTAMPNASL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 405
>gi|251793083|ref|YP_003007809.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Aggregatibacter aphrophilus NJ8700]
gi|247534476|gb|ACS97722.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter
aphrophilus NJ8700]
Length = 474
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 176/345 (51%), Gaps = 16/345 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LTD EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTDVPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G V IV G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKSNPKLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQIRGG 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
V + ++ D LP+ R + I GC CTYC + RG S V+ +
Sbjct: 122 KSSVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + GV+EV L ++ AY G + + DG LR ++P
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDRLRFTTSHP 241
Query: 286 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+E +I +V R P + SFLH+PVQSGSD +L+ M R +T ++++++ L + P
Sbjct: 242 ---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRGHTAIEYKSIIRKLKAVRP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+QI++D I GFPGET+EDF QT+NLI + F + RPG
Sbjct: 299 NIQISSDFIVGFPGETEEDFEQTMNLIAQVNFDMSFSFIYSARPG 343
>gi|415885569|ref|ZP_11547497.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
gi|387591238|gb|EIJ83557.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
Length = 450
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/341 (31%), Positives = 174/341 (51%), Gaps = 17/341 (4%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N ++E + GY D AD+++INTCTV + +I
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQQGYERVDFEAIADVYVINTCTVTNTGDKKSPQVIR 62
Query: 120 KC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 171
+ K+ + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEILAIPGVDIVVGTQDRAKMLEYIEKYKKERQPINAV 122
Query: 172 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
++ + LD+P ++ L I GC CT+C ARG L S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPQEVIRQA 181
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 289
+ ++ G KE+ L+ TG YG D+ N +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 290 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ E+ EVL + + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 D---EVIEVLDKSKVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLKEALPGLAV 296
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R G
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTG 337
>gi|383784615|ref|YP_005469185.1| tRNA-i(6)A37 modification enzyme [Leptospirillum ferrooxidans C2-3]
gi|383083528|dbj|BAM07055.1| putative tRNA-i(6)A37 modification enzyme [Leptospirillum
ferrooxidans C2-3]
Length = 463
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 185/355 (52%), Gaps = 26/355 (7%)
Query: 49 GSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
G +P +T +++TFGC N DSE M+G ++ GY + +A + L+NTCTV+
Sbjct: 3 GKDNPTPKEGKTFFIRTFGCQMNVHDSERMSGLMAEAGYTPVSEASDASVILVNTCTVRD 62
Query: 109 PSQSAMDTLIAKCKSA-----KKPLVVAGCVPQGSRDLKEL-----EGVSIVGVQQIDRV 158
+ + I + +S + LV+ GC+ + R+ KEL + ++G QI +
Sbjct: 63 KADQKALSDIGRLRSVAEDGHSRHLVITGCMAE--REGKELFRMVPDADLVMGPSQIRNL 120
Query: 159 VEVVEETLKG-HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 217
+ ++E+ +G H+V P + P R + + I GC +C YC RG
Sbjct: 121 IPLLEKVEQGSHKVMGRDLPPAPLITPPAARPPGIMAYVTIQEGCDKSCAYCVVPATRGP 180
Query: 218 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
S T+ + V ++ +G +E+ L ++ A+G G +L L+ A+ E+ +G +
Sbjct: 181 EISRTISDIKKEVEQLVREGYREITLLGQNVNAFGIKEGTSLANLMRAL-DEV--EGLSR 237
Query: 278 LRIGMTNPPF----ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 333
+R ++P ++ +K++ +V+ H H+P+QSGSDAVL+ MNR YT +F
Sbjct: 238 IRFTTSHPRDMSIDLIRAMKDVKKVMPH------FHLPMQSGSDAVLARMNRGYTRKEFA 291
Query: 334 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 388
++ L + +PG+ I TD+I G+ GET E+F +T++ ++E+ F + PRP
Sbjct: 292 RWIEHLRDEIPGIAITTDLIVGYVGETQEEFEETLSAVEEFSFDGAFSFIYSPRP 346
>gi|416892590|ref|ZP_11923914.1| lipoyl synthase [Aggregatibacter aphrophilus ATCC 33389]
gi|347814288|gb|EGY30937.1| lipoyl synthase [Aggregatibacter aphrophilus ATCC 33389]
Length = 474
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 176/345 (51%), Gaps = 16/345 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LTD EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTDVPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G V IV G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKSNPKLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQIRGG 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
V + ++ D LP+ R + I GC CTYC + RG S V+ +
Sbjct: 122 KSSVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + GV+EV L ++ AY G + + DG LR ++P
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDRLRFTTSHP 241
Query: 286 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+E +I +V R P + SFLH+PVQSGSD +L+ M R +T ++++++ L + P
Sbjct: 242 ---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRGHTAIEYKSIIRKLKAVRP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+QI++D I GFPGET+EDF QT+NLI + F + RPG
Sbjct: 299 NIQISSDFIVGFPGETEEDFEQTMNLIAQVNFDMSFSFIYSARPG 343
>gi|328955566|ref|YP_004372899.1| MiaB family RNA modification protein [Coriobacterium glomerans PW2]
gi|328455890|gb|AEB07084.1| RNA modification enzyme, MiaB family [Coriobacterium glomerans PW2]
Length = 456
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 187/372 (50%), Gaps = 23/372 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLI 118
+T +++TFGC N DSE +AG L + G + +EADI + TC V+ ++A L
Sbjct: 13 KTYFVRTFGCQMNLHDSERVAGLLDSCGCLEVETPQEADIVVFMTCCVR---EAADVRLY 69
Query: 119 AKCK---------SAKKPLVVAGCVPQ-GSRDLK-ELEGVSIV-GVQQIDRVVEVVEETL 166
+C ++ + V GC+ Q RDL L+ V +V G I V +++
Sbjct: 70 GQCSSLKSLSSPPGGRRIVAVGGCIAQRDGRDLLCNLDNVDVVFGTHSIAHVAQLLAAAF 129
Query: 167 KGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
+ VR ++K A D+P RR + +PI GC C+YC + RG S +
Sbjct: 130 EDESPHVRTRDQEKRAATDMPWSRRRTYHAWVPIMTGCNNFCSYCIVPYVRGRERSRPAD 189
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 284
++ V + GV+EV L ++ +YGRD P ++ E+ G +R ++
Sbjct: 190 EVIDEVVGLARSGVREVTLLGQNVNSYGRD-SAGRPRFAK-LLREVADTGIERIRFTSSH 247
Query: 285 PPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 343
P +L E ++ +A++ P V LH+ VQSGS +LS MNR Y+ + ++D + + +
Sbjct: 248 PKDLLPETIEAMADL---PAVMPQLHLAVQSGSSRILSLMNRRYSRESYLELIDRVRQRM 304
Query: 344 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSL 403
P + ++TDII GFPGE+++DF +T++L++ +F Q + R G ++ + +
Sbjct: 305 PEIALSTDIIVGFPGESEDDFEETLSLVRSVRFSQAFTFIYSRRQGTPAAQIEDSTPRDV 364
Query: 404 LFSNYKFTVMLI 415
+ Y + ++
Sbjct: 365 VLDRYNRLLRVV 376
>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
15897]
gi|224525356|gb|EEF94461.1| tRNA methylthiotransferase YqeV [Catenibacterium mitsuokai DSM
15897]
Length = 435
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 167/339 (49%), Gaps = 13/339 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
T+ T GC N +SE M GY D AD+++INTCTV + S +I
Sbjct: 3 TVAFHTLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKSRQMIR 62
Query: 120 KCKSAKKPLV--VAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRL 173
K V V GC Q S ++ +EGVS+V G Q +V+ VEE H+ V++
Sbjct: 63 KAHRTNPEAVICVVGCYSQVASEEITGIEGVSVVLGTQHRASIVDFVEEYKSTHKQIVKI 122
Query: 174 LHRKKLPALDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ K+ + + NK L I GC CTYC +ARG + S E ++ + +
Sbjct: 123 ENVMKVSRFEDLSIHAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVRSRPKEDVLRQAQ 182
Query: 232 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++ G E+ L+ T YG D+ + LL + ++ G LRI + +
Sbjct: 183 ELVDRGFVEIVLTGIHTAGYGVDLENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQVSD 240
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ E+ + + P + LH+P+QSG+D++L M R Y ++F L E +PG+ I T
Sbjct: 241 EIIEL--IGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALPGISITT 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
D+I GFPGET+EDF T N IK+ F Q+H+ + R G
Sbjct: 299 DVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRG 337
>gi|427820641|ref|ZP_18987704.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427824382|ref|ZP_18991444.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410571641|emb|CCN19875.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410589647|emb|CCN04720.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 475
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 190/368 (51%), Gaps = 25/368 (6%)
Query: 46 SKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTC 104
S G+ + G +Y++TFGC N+ DS+ MA L A G LTDN E+AD+ L NTC
Sbjct: 14 SDAGTPATAAQGLGKLYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC 73
Query: 105 TVKSPSQSAMDTLIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQID 156
+V+ +Q + + + + + KK + V GCV +G +K V +V G Q +
Sbjct: 74 SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTLH 133
Query: 157 RVVEVVE----ETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKT 211
R+ ++++ + + ++ +K AL P+V FV I+ GC C++C
Sbjct: 134 RLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIME---GCSKYCSFCVV 190
Query: 212 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIV 267
+ RG S + ++ V + GVKEV L ++ AY +G + I +L V
Sbjct: 191 PYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGKIADFAMLLEYV 250
Query: 268 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 327
E+P G +R ++P + + + + R P + SFLH+PVQ+GSD VL+AM R Y
Sbjct: 251 HEIP--GIERIRYTTSHPKEMTQRM--VDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGY 306
Query: 328 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 387
T +F++VV L P + +++D I GFPGET+EDF +T+ LI++ F + R
Sbjct: 307 TALEFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRR 366
Query: 388 PGIQFLNL 395
PG +L
Sbjct: 367 PGTPAADL 374
>gi|315634739|ref|ZP_07890023.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
ATCC 33393]
gi|315476687|gb|EFU67435.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Aggregatibacter segnis
ATCC 33393]
Length = 474
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 177/345 (51%), Gaps = 16/345 (4%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L S G LT+ EEAD+ L+NTC+++ +Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLHSTHGLELTEVPEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KK + V GCV +G V IV G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKNNPNLLIGVGGCVASQEGEHIRTRAPYVDIVFGPQTLHRLPEMINQIRGG 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
V + ++ D LP+ R + I GC CTYC + RG S V+ +
Sbjct: 122 KSSVVDISFPEIEKFDCLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPVDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 285
+ + + A GV+EV L ++ AY G + + DG LR ++P
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGEICTFAELLRLVAAIDGIDRLRFTTSHP 241
Query: 286 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+E +I +V R P + SFLH+PVQSGSD VL+ M R +T ++++++ L + P
Sbjct: 242 ---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLTMMKRGHTALEYKSIIRKLKAVRP 298
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+QI++D I GFPGET+EDF QT+NLI + F + RPG
Sbjct: 299 NIQISSDFIVGFPGETNEDFEQTMNLIAQVNFDMSFSFIYSARPG 343
>gi|373454824|ref|ZP_09546687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
gi|371935520|gb|EHO63266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
Length = 447
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 21/343 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
Y T+GC N++D+E + GQL GY +N E+ADI ++NTC+V+ ++ + I +
Sbjct: 13 YTITYGCQMNENDTERINGQLEDLGYKPAENMEDADIVIMNTCSVRQNAEEKVYGKIGEI 72
Query: 122 KSAKKP-----LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVV-EETLKGHEV 171
K K L +AGC+ Q ++ K +E + I+ G I + +++ E +G +
Sbjct: 73 KKLKDKNPRMLLGIAGCMAQENKG-KLIERMPIIDFVIGPYHIHDLKDIISRENARGGHI 131
Query: 172 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
R D L VR+++ +PI GC CTYC + RG S T++ +
Sbjct: 132 VKTERNPHSVRDYSELRSVRKSRVFAWIPIMQGCNKFCTYCIVPYVRGREISRTIDDICR 191
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 286
++ + G KE+ L ++ +YG D G N L+ AI DG +R ++P
Sbjct: 192 EIKGLAETGYKEITLLGQNVNSYGLDFRNGTNFGDLIRAIDK---IDGIERVRYMTSHPR 248
Query: 287 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 346
+ + I + P V +H+PVQ GS+ +L MNR YT+ F+ +V+ + + +P +
Sbjct: 249 DMTFDM--IDAMAASPKVVRHMHLPVQHGSNEMLKQMNRGYTIEHFKELVNYVRQKMPDV 306
Query: 347 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TD+I GFPGET+E +T+ L+KE +F + + PR G
Sbjct: 307 ALTTDLITGFPGETEEMHQETIKLLKEVRFDSAYTFIYSPRTG 349
>gi|336249274|ref|YP_004592984.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
aerogenes KCTC 2190]
gi|334735330|gb|AEG97705.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Enterobacter
aerogenes KCTC 2190]
Length = 474
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 182/348 (52%), Gaps = 22/348 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L A GY LT+ +EEAD+ L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCK--SAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K KKP V V GCV +G + V I+ G Q + R+ E++
Sbjct: 62 QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIGAVRNN 121
Query: 169 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 226
H+ V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181
Query: 227 VGRVRTVIADGVKEVWLSSEDTGAYGRD----IGVNLPILLNAIVAELPPDGSTMLRIGM 282
+ + + A GV+EV L ++ A+ + N LL + A DG +R
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGNFADLLRLVAA---IDGIDRIRFTT 238
Query: 283 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 341
++P +E +I +V R P + SFLH+PVQ+GSD VL+ M R +T+ +++ ++ L E
Sbjct: 239 SHP---IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLNLMGRTHTVLEYKAIIRKLRE 295
Query: 342 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P +QI++D I GFPGET EDF +T+ LI E F + F RPG
Sbjct: 296 ARPDIQISSDFIVGFPGETTEDFEKTMKLIAEVNFDVSYSFIFSARPG 343
>gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 471
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 182/364 (50%), Gaps = 26/364 (7%)
Query: 50 SLSPKIPGTETIY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKS 108
++ K G + Y ++T+GC N DSE +AG L GY T+N E+AD+ L NTC V+
Sbjct: 21 EIAEKNKGKDLYYHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVRE 80
Query: 109 PSQSAMDTLIAKCKS--AKKP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRV 158
++ + +++ K A+ P + V+GC+ Q ++ ++ + IV G I +
Sbjct: 81 HAEIRVLGRVSQMKELKARNPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKF 140
Query: 159 VEVVEETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 216
+++ E L ++ ++ K +LP R + + I GC CTYC + RG
Sbjct: 141 PQLLWEALNSQDIVIDVIEDTKNVIEELPVKRDSNLKAWVNIIYGCNNFCTYCIVPYTRG 200
Query: 217 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELP 271
S E +V V+ + G KE+ L ++ +YG+D+ N+ LN I
Sbjct: 201 REKSRKPEDIVAEVKELAQKGYKEITLLGQNVNSYGKDLDENITFAKLLYKLNEI----- 255
Query: 272 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 331
+G +R ++P I + L L C LH+PVQ+GS+ +L MNR+YT
Sbjct: 256 -EGIERIRFMTSHPKDISDELIYAMRDLNKVC--EHLHLPVQAGSNKILKKMNRKYTKEH 312
Query: 332 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
+ ++D + +P + I TDII GFPGET+EDF +T++L++ +F + + R G
Sbjct: 313 YLEIIDKVRSNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTV 372
Query: 392 FLNL 395
N+
Sbjct: 373 AANM 376
>gi|403530131|ref|YP_006664660.1| hypothetical protein RM11_0203 [Bartonella quintana RM-11]
gi|403232203|gb|AFR25946.1| hypothetical protein RM11_0203 [Bartonella quintana RM-11]
Length = 458
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 181/363 (49%), Gaps = 31/363 (8%)
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVK 107
T S+ PK +++KT+GC N DS+ M LS+ GY T +AD+ L+NTC ++
Sbjct: 9 TPSVVPK-----KVFIKTYGCQMNVYDSQRMTDSLSSKGYVATQTPNDADLILLNTCHIR 63
Query: 108 SPSQSAMDTLIAKCKSAK------KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQID 156
+ + + + + + + KPL+ V GCV Q G+ L+ V +V G Q
Sbjct: 64 EKAAEKLYSDLGRLRVMRQERTLDKPLMIGVTGCVAQAEGNEILRRAPMVDLVIGPQMYH 123
Query: 157 RVVEVVEETLKGHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 207
R+ +++E+T +G ++ + H LP + VR+ L + GC CT
Sbjct: 124 RLPDLLEQTKQGKKIVETDYPVEDKFAH---LPPHNKRAVRKRGVSAFLTVQEGCDKFCT 180
Query: 208 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 267
+C + RG S +VE + R +I GVKE+ L ++ + I L ++
Sbjct: 181 FCVVPYTRGAEISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQIANGKTWRLGDLL 240
Query: 268 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 326
L DG LR ++P + + L IA + +LH+PVQSGSD +L AMNR+
Sbjct: 241 YHLAKLDGLKRLRYTTSHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILKAMNRQ 298
Query: 327 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 386
+ + +++ + P + + D I GFPGETDEDF +TV LIK+ ++ + ++ P
Sbjct: 299 HKSIHYLHLIEKIRTARPDIAFSGDFIVGFPGETDEDFEETVKLIKQVQYSSAYSFKYSP 358
Query: 387 RPG 389
RPG
Sbjct: 359 RPG 361
>gi|118444753|ref|YP_878562.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
gi|118135209|gb|ABK62253.1| MiaB-like tRNA modifying enzyme [Clostridium novyi NT]
Length = 433
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 176/338 (52%), Gaps = 17/338 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSA 124
T GC N +SE MA + GY + + E AD++++NTCTV + S ++++ K
Sbjct: 7 TLGCRVNMYESEAMAEKFIKNGYEVVEFDEMADVYVVNTCTVTNMSDKKSRQMLSRAKRK 66
Query: 125 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV----EETLKGHEVR-LLH 175
++A GC Q +KE+ V ++ G + +V V EE EV +L
Sbjct: 67 NPESIIAAVGCYTQIAPEKVKEIGDVDVILGTRNKGDIVYWVNRAKEEGKTIVEVNDVLR 126
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
KK L++ + + +K L I GC C+YC ARG + S E ++ V+ + A
Sbjct: 127 NKKFEELNIEEYQ-DKTRAFLKIQDGCNNFCSYCLIPFARGAVCSKNPEIIIDEVKKLAA 185
Query: 236 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE-HLK 293
G KE+ LS D +YG D+ + +L I+ ++ DG T +RIG P F E +K
Sbjct: 186 HGFKEIILSGIDISSYGVDLEGDWNLL--TILKKIDEIDGITRVRIGSIGPEFFNEDRIK 243
Query: 294 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 353
EI + L+ C + H+ +QSG + L MNR+YT +F VV L + + + I TDII
Sbjct: 244 EIGK-LKKLCPH--FHLSLQSGCNETLKRMNRKYTTEEFENVVKLLRKYIKDISITTDII 300
Query: 354 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQ 391
GFPGET E+F++T +K + ++HI ++ PR G +
Sbjct: 301 VGFPGETIEEFDETYEYLKRIELSKMHIFKYSPRTGTR 338
>gi|167039974|ref|YP_001662959.1| MiaB-like tRNA modifying protein [Thermoanaerobacter sp. X514]
gi|300914064|ref|ZP_07131380.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
gi|307724703|ref|YP_003904454.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
gi|166854214|gb|ABY92623.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X514]
gi|300888999|gb|EFK84145.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X561]
gi|307581764|gb|ADN55163.1| MiaB-like tRNA modifying enzyme [Thermoanaerobacter sp. X513]
Length = 449
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 175/340 (51%), Gaps = 14/340 (4%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTV--KSPSQSAMDTLIAKCK 122
T GC NQ ++E MA GY + D E+AD+++INTCTV +S +S + A+ K
Sbjct: 21 TLGCKVNQYETEVMAELFKKAGYEVVDFDEKADVYVINTCTVTNRSDMKSRQEIRKARKK 80
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
+ +V GC Q S + L V I +G + D++VE+VEE + ++ + +
Sbjct: 81 NPDALVVAVGCYVQVSPEEAFSLPEVDIAIGTKNKDKIVELVEEFTQKNQKLSVVNNIMT 140
Query: 181 ALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 236
+ + + E + I GC CTYC +ARG + S + ++ V+
Sbjct: 141 QKEYEEFGVTAYTERTRAYIKIQDGCNQYCTYCIIPYARGPVRSRDPKKVLDEVKRFADS 200
Query: 237 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH-LKEI 295
G KE+ L+ +YG+D+ N+ LL+ I DG +R+ P F+ E +KEI
Sbjct: 201 GYKEIVLTGIHIASYGKDLK-NIG-LLDIIKMIHEIDGIKRIRLSSIEPTFLTEEFVKEI 258
Query: 296 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 355
A + P + HV +QSG D L M R YT ++++V+D L E + + I TD++ G
Sbjct: 259 ANL---PKMCRHYHVSLQSGCDETLKRMGRRYTTKEYKSVIDRLREYIKDVAITTDVMVG 315
Query: 356 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNL 395
FPGET+E+F +T ++E F ++H+ ++ R G + N
Sbjct: 316 FPGETEEEFLKTYKFVEEICFSKMHVFKYSRRKGTRAYNF 355
>gi|222529273|ref|YP_002573155.1| MiaB family RNA modification protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222456120|gb|ACM60382.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor bescii
DSM 6725]
Length = 434
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 181/345 (52%), Gaps = 35/345 (10%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T GC NQ +++ +A G+ + D +AD+++INTCTV + S I K K
Sbjct: 7 TLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNISDRKSRQAIKKAKKL 66
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 180
S + +VV GC PQ ++++++E V I+ G + ++V+ V + L+ +KK+
Sbjct: 67 SPQSIVVVMGCYPQVYPQEVEKIEDVDIIIGTKDRQKIVDYVRQYLED-------KKKIV 119
Query: 181 ALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
A++ +R F E+ + I GC C+YC +ARG + S +++S+
Sbjct: 120 AIN-EDYKREAFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLKSIEE 178
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
V ++ G KE ++ + +YG+D+ + L++ I +G +R+ P +
Sbjct: 179 EVIRLVQKGYKEFVITGINISSYGKDLDEKVT-LIDVIERVNKIEGVKRIRLSSLEPVIM 237
Query: 289 ----LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+E L ++ H LH+ +QSGSD +L MNR YT + ++++VD + E
Sbjct: 238 NGEFIERLLSFDKLCHH------LHLSLQSGSDKILKLMNRHYTTAQYQSIVDRIREKWD 291
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ TDII GFPGET+EDFN T++ +++ F ++H+ +F P+ G
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNATLDFVQKIGFSRIHVFRFSPKKG 336
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 178/341 (52%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NTC ++ +++ + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E F + PR G
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREG 405
>gi|358635769|dbj|BAL23066.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Azoarcus sp.
KH32C]
Length = 445
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 182/354 (51%), Gaps = 24/354 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+Y++TFGC N+ DS+ MA L A + TDN EEAD+ L NTC+V+ +Q + +
Sbjct: 4 LYIRTFGCQMNEYDSDKMADVLGATEELVKTDNPEEADVILFNTCSVREKAQERVFHDLG 63
Query: 120 KCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVV-EETLKGHE 170
+ K K+ + V GCV +G+ + V +V G Q + R+ +++ E G
Sbjct: 64 RVKHLKQANPNLIIGVGGCVASQEGAAIVARAPYVDVVFGPQTLHRLPQLIAERRYSGKS 123
Query: 171 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 229
+ ++ D LP R + I GC CTYC + RG S +E ++
Sbjct: 124 QVDISFPEIEKFDNLPPARVEGSSAFVSIMEGCSKYCTYCVVPYTRGEEVSRPLEDVLTE 183
Query: 230 VRTVIADGVKEVWLSSEDTGAY-------GRDIGVNLPILLNAIVAELPPDGSTMLRIGM 282
V + GVKEV L ++ A+ G DIG + LL V+E+P G +R
Sbjct: 184 VAGLADQGVKEVTLLGQNVNAWRGPYTRDGSDIG-DFAFLLEC-VSEIP--GIERIRYTT 239
Query: 283 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
++P + + E L P + S LH+PVQSGSD +L+AM R Y++ +F++VV L
Sbjct: 240 SHPREMTPRMFEAYAKL--PKLVSHLHLPVQSGSDRILAAMKRGYSILEFKSVVRKLRAA 297
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
P + +++D I GFPGET+EDF +T+ LI+E F F PRPG +L+
Sbjct: 298 RPDLSLSSDFIVGFPGETEEDFEKTMKLIEEVGFDASFSFVFSPRPGTPAADLE 351
>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 515
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 23/373 (6%)
Query: 32 KYNKNKPRLHDNHLSKTGSLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYA 88
K K + HDN + + G Y++T+GC N+ D+E MAG A GY
Sbjct: 44 KRGKEEVEYHDNF-----QIEQRFKGMGQGRKFYIRTYGCQMNEHDTEVMAGIFMALGYE 98
Query: 89 LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCKSAK--KP---LVVAGCVPQG----SR 139
TD ++AD+ L+NTC ++ +++ + + K K +P + V GC+ Q ++
Sbjct: 99 ATDTVKDADVILLNTCAIRENAENKVFGELGHLKPLKLERPDLLIGVCGCMSQEESVVNK 158
Query: 140 DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEIL 196
LK + V ++ G I R+ ++ E E + + ++ +LPKVR K +
Sbjct: 159 ILKTYDQVDMIFGTHNIHRLPHILHEAYMSKEMVIEVWSKEGDVIENLPKVRHGKIKAWV 218
Query: 197 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 256
I GC CTYC + RG S E ++ VR + A+G KE+ L ++ AYG+D
Sbjct: 219 NIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRQLAAEGYKEITLLGQNVNAYGKDFD 278
Query: 257 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 316
++ L ++ +L +R ++P +HL E+ + + + +H+PVQSGS
Sbjct: 279 -DITYRLGDLMDDLRKIDIPRIRFTTSHPRDFDDHLIEV--LAKGGNLVDHIHLPVQSGS 335
Query: 317 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 376
+L M R+YT + +V+ + +P + TDII GFP ETDE F +T++L +E F
Sbjct: 336 SDMLKIMARKYTRESYLELVNKIRTAIPTASLTTDIIVGFPNETDEQFEETMSLYREVGF 395
Query: 377 PQVHISQFYPRPG 389
+ R G
Sbjct: 396 DMAFTYIYSAREG 408
>gi|326443848|ref|ZP_08218582.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
clavuligerus ATCC 27064]
Length = 497
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 179/364 (49%), Gaps = 15/364 (4%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++T+GC N DSE ++G L GY A + +AD+ + NTC V+ + + + + +
Sbjct: 9 IRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKLYGNLGR 68
Query: 121 CKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K +P + V GC+ Q RD + V +V G I ++ ++E E +
Sbjct: 69 LAPMKTRRPGMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLLERARVQEEAQ 128
Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + L A LP R + + + I+VGC CT+C RG ++ +
Sbjct: 129 VEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEI 188
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A+GV E+ L ++ AYG DIG + + A +G +R +P +
Sbjct: 189 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTD 247
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ IA + P V LH+P+QSGSDAVL AM R Y F ++D + E +P I+T
Sbjct: 248 DV--IAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIDKVREAIPHAAIST 305
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKF 410
DII GFPGET+EDF QT++ ++E +F Q+ RPG ++ ++ + Y+
Sbjct: 306 DIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATMEGQLPKEVVQARYER 365
Query: 411 TVML 414
V+L
Sbjct: 366 LVVL 369
>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
Length = 520
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 175/341 (51%), Gaps = 15/341 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NTC ++ +++ + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 121 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 170
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 171 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 228
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 229 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 288
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 289 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 348
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 375
Query: 349 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
TDII GFP ETDE F +T++L +E +F + + PR G
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREG 416
>gi|441178473|ref|ZP_20970033.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
rimosus subsp. rimosus ATCC 10970]
gi|440614511|gb|ELQ77777.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
rimosus subsp. rimosus ATCC 10970]
Length = 487
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 179/363 (49%), Gaps = 14/363 (3%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYA-LTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC 121
M+T+GC N DSE ++G L GY ++E AD+ + NTC V+ + + + + +
Sbjct: 1 MRTYGCQMNVHDSERLSGLLEDAGYVPAPKDAEGADVVVFNTCAVRENADNRLYGNLGQL 60
Query: 122 --KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 173
K A +P + V GC+ Q RD +K+ V +V G I ++ ++E E ++
Sbjct: 61 APKKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLERARVQEEAQV 120
Query: 174 LHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 231
+ L A LP R + + + I+VGC CT+C RG ++ +
Sbjct: 121 EIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEIE 180
Query: 232 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 291
++ +GV E+ L ++ AYG DIG + + A +G +R +P +
Sbjct: 181 ALVDEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVRFTSPHPRDFTDD 239
Query: 292 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 351
+ IA + P V LH+P+QSGSD VL AM R Y F +++ + +P I+TD
Sbjct: 240 V--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIEKVRAAMPDAAISTD 297
Query: 352 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKFT 411
II GFPGET+EDF QT++ ++E +F Q Q+ RPG ++ ++ + Y+
Sbjct: 298 IIVGFPGETEEDFEQTLHTVRESRFAQAFTFQYSKRPGTPAAEMEGQIPKEVVQARYERL 357
Query: 412 VML 414
V L
Sbjct: 358 VAL 360
>gi|429090738|ref|ZP_19153445.1| tRNA-i(6)A37 methylthiotransferase [Cronobacter dublinensis 1210]
gi|426744751|emb|CCJ79558.1| tRNA-i(6)A37 methylthiotransferase [Cronobacter dublinensis 1210]
Length = 474
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 180/347 (51%), Gaps = 20/347 (5%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT 116
T+ +++KT+GC N+ DS MA L + G+ LTD +EEADI L+NTC+++ +Q +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLETTHGFTLTDVAEEADILLLNTCSIREKAQEKVFH 61
Query: 117 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 168
+ + K+ K+ + V GCV +G V I+ G Q + R+ E++ + +KG
Sbjct: 62 QLGRWKTLKEKNPDVIIGVGGCVASQEGDHIRDRARYVDIIFGPQTLHRLPEMINQ-VKG 120
Query: 169 HEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 224
++ P ++ LP+ R + I GC CTYC + RG S +
Sbjct: 121 TRSPVVD-ISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPSD 179
Query: 225 SLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 283
+V + + A GV+EV L ++ A+ G + + + + DG +R +
Sbjct: 180 DIVLEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIGTFADLLRLVAAIDGIDRIRFTTS 239
Query: 284 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 342
+P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++ L
Sbjct: 240 HP---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNMMGRTHTALEYKAIIRKLRAA 296
Query: 343 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
P +QI++D I GFPGET +DF QT+ LI E F + F RPG
Sbjct: 297 RPDIQISSDFIVGFPGETQQDFEQTMKLIAEVNFDMSYSFIFSARPG 343
>gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
hydrothermalis 108]
gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
hydrothermalis 108]
Length = 471
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 174/339 (51%), Gaps = 19/339 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKCK-- 122
T+GC N DSE +AG L+A GY T+N +EAD+ + NTC+V+ ++S + I K
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 123 SAKKP---LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETL--KGHEVR 172
KKP + V GC+PQ ++L + I G + + + +++ + K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAIMEKKTVID 161
Query: 173 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 232
+ + + +P R+ + I GC C+YC + RG S E +V +
Sbjct: 162 VSEDEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIVYEIEQ 221
Query: 233 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
+ +GVKEV L ++ +YG+D+G + P LL V E+ G +R ++P + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGDGITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
L L C + +H+PVQSGS +L AMNR YT D+ +++ L +P + I T
Sbjct: 279 ELIVAMRDLEKVCEH--IHLPVQSGSTRILKAMNRHYTKEDYLRLIEKLKTNIPDIAITT 336
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
DII GFPGETDEDF T+++ ++ +F + + R G
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRG 375
>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
Length = 450
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 177/346 (51%), Gaps = 23/346 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIAKC--K 122
T GC N ++E + GY TD +D+++INTCTV + +I + K
Sbjct: 8 TLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRRAIRK 67
Query: 123 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 175
+ + V GC Q S ++ + GV IV G Q +++E +E+ + + ++
Sbjct: 68 NPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINGVGNIMK 127
Query: 176 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 235
+ LD+P ++ L I GC CT+C ARG + S + ++ + + ++
Sbjct: 128 NRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQQLVD 186
Query: 236 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 294
G KE+ L+ TG YG D+ NL +LL + A++ G LRI I + + E
Sbjct: 187 AGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQITDEVIE 244
Query: 295 IAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ + +
Sbjct: 245 VMDQSKVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALPGLAVTS 298
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLD 396
D+I GFPGET+E+F +T N IKE+KF ++H+ + R G +D
Sbjct: 299 DVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMD 344
>gi|23099083|ref|NP_692549.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
iheyensis HTE831]
gi|81746368|sp|Q8EQR4.1|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 519
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 181/352 (51%), Gaps = 23/352 (6%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSA 113
KI + ++T+GC N+ D+E MAG LS GY T +EEADI L+NTC ++ +++
Sbjct: 71 KIGHGKKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENK 130
Query: 114 MDTLIAKCKSAK--KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVE 163
+ I K K P + V GC+ Q R L++ + + ++ G I R+ +V+
Sbjct: 131 VFGEIGHLKPLKLENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLVK 190
Query: 164 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 221
E L G E V + ++ +LPK R+ K + I GC CTYC RG S
Sbjct: 191 EALFGKEMIVEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSR 250
Query: 222 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAI-VAELPPDGSTM 277
+ ++ VR ++A G +EV L ++ AYG+D I L L+N I ++P
Sbjct: 251 RPKDIIQEVRHLVAQGYQEVTLLGQNVNAYGKDFEDIEYGLGDLMNDIHKIDIP-----R 305
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
+R ++P + L E+ + + + +H+PVQSGS +L MNR+YT ++ +V
Sbjct: 306 VRFTTSHPRDFDDRLIEV--LAQGGNLLDHIHLPVQSGSSEILKKMNRKYTREEYLELVR 363
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ +P + TDII GFP ET+E F +T+ L++E F + + PR G
Sbjct: 364 KIRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPREG 415
>gi|395780925|ref|ZP_10461369.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis 085-0475]
gi|395416800|gb|EJF83162.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Bartonella washoensis 085-0475]
Length = 457
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 179/352 (50%), Gaps = 26/352 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTCTVKSPSQSAMDT-- 116
+ +++KT+GC N DS+ M LS+ GY T +AD+ L+NTC ++ + + +
Sbjct: 14 KKVFIKTYGCQMNVYDSQRMTDSLSSQGYVATQTPNDADLILVNTCHIREKAAEKLYSDL 73
Query: 117 ----LIAKCKSAKKPLVVA--GCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 167
++ + ++A PL++A GCV Q G L+ V +V G Q R+ +++E+T +
Sbjct: 74 GRLRIMRQERTADNPLMIAVTGCVAQAEGREILRRAPTVDLVIGPQMYHRLPDLLEQTKQ 133
Query: 168 GHEV---------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 218
G ++ + H LP + VR+ L + GC CT+C + RG
Sbjct: 134 GKKIVATDYAVEDKFAH---LPPHNKRAVRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSE 190
Query: 219 GSYTVESLVGRVRTVIADGVKEVWLSSED-TGAYGRDIGVNLPILLNAIVAELPPDGSTM 277
S +VE + R +I GVKE+ L ++ G +G+ L + + DG
Sbjct: 191 ISRSVEQITEEARQLIEAGVKEITLLGQNVNGWHGQSTNGKTWRLGDLLYHLAKLDGLKR 250
Query: 278 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 337
LR ++P + + L IA + +LH+PVQSGSD +L AMNR++ + +++
Sbjct: 251 LRYTTSHPRDMDDSL--IAAHRDLDILMPYLHLPVQSGSDRILKAMNRQHKSVHYLHLIE 308
Query: 338 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
+ P + + D I GFPGETDEDF +T+ LIK+ ++ + ++ PRPG
Sbjct: 309 KIRTARPDIAFSGDFIVGFPGETDEDFEETIKLIKQVQYSSAYSFKYSPRPG 360
>gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
Length = 476
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 180/345 (52%), Gaps = 22/345 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTCTVKSPSQSAMDTLIA 119
+YMKT+GC N+ DS M L S GY LTD +EEAD+ L+NTC+++ +Q + +
Sbjct: 7 LYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQLG 66
Query: 120 KCK--SAKKPLV---VAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGHEV 171
+ K KKP + V GCV D + V IV G Q + R+ E++ + ++G+
Sbjct: 67 RWKFFKDKKPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQ-IQGNRS 125
Query: 172 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 227
++ P ++ LP+ R + I GC CT+C + RG S + ++
Sbjct: 126 PIID-ISFPEIEKFDNLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCDDIL 184
Query: 228 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTMLRIGMTNP 285
+ + A GV+EV L ++ AY R + I A + L DG +R ++P
Sbjct: 185 FEIAQLAAQGVREVNLLGQNVNAY-RGATFDGEICSFAELLRLVASIDGIDRVRFTTSHP 243
Query: 286 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 344
+E +I EV R P + SFLH+PVQSGSD +L+ M R +T +++ ++ L E P
Sbjct: 244 ---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLREARP 300
Query: 345 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 389
G+ I++D I GFPGET EDF +T+ LI + F + + RPG
Sbjct: 301 GILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPG 345
>gi|254391805|ref|ZP_05007000.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294815497|ref|ZP_06774140.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
[Streptomyces clavuligerus ATCC 27064]
gi|197705487|gb|EDY51299.1| methylase [Streptomyces clavuligerus ATCC 27064]
gi|294328096|gb|EFG09739.1| Dimethylallyl adenosine tRNA methylthiotransferase miaB
[Streptomyces clavuligerus ATCC 27064]
Length = 506
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 179/364 (49%), Gaps = 15/364 (4%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTCTVKSPSQSAMDTLIAK 120
++T+GC N DSE ++G L GY A + +AD+ + NTC V+ + + + + +
Sbjct: 18 IRTYGCQMNVHDSERLSGLLEEAGYVRAAEGSDGDADVVVFNTCAVRENADNKLYGNLGR 77
Query: 121 CKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 172
K +P + V GC+ Q RD + V +V G I ++ ++E E +
Sbjct: 78 LAPMKTRRPGMQIAVGGCLAQKDRDTIVSRAPWVDVVFGTHNIGKLPVLLERARVQEEAQ 137
Query: 173 LLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 230
+ + L A LP R + + + I+VGC CT+C RG ++ +
Sbjct: 138 VEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAEI 197
Query: 231 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 290
++A+GV E+ L ++ AYG DIG + + A +G +R +P +
Sbjct: 198 EALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIEGLERVRFTSPHPRDFTD 256
Query: 291 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 350
+ IA + P V LH+P+QSGSDAVL AM R Y F ++D + E +P I+T
Sbjct: 257 DV--IAAMAETPNVMPQLHMPLQSGSDAVLRAMRRSYRQERFLGIIDKVREAIPHAAIST 314
Query: 351 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGIQFLNLDSTELLSLLFSNYKF 410
DII GFPGET+EDF QT++ ++E +F Q+ RPG ++ ++ + Y+
Sbjct: 315 DIIVGFPGETEEDFEQTLHTVREARFANAFTFQYSKRPGTPAATMEGQLPKEVVQARYER 374
Query: 411 TVML 414
V+L
Sbjct: 375 LVVL 378
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,323,346,364
Number of Sequences: 23463169
Number of extensions: 310816035
Number of successful extensions: 767990
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8005
Number of HSP's successfully gapped in prelim test: 815
Number of HSP's that attempted gapping in prelim test: 741203
Number of HSP's gapped (non-prelim): 9579
length of query: 453
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 307
effective length of database: 8,933,572,693
effective search space: 2742606816751
effective search space used: 2742606816751
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)